sbuild (Debian sbuild) 0.73.0 (23 Dec 2016) on gcc131.bak.milne.osuosl.org +==============================================================================+ | libgkarrays 2.1.0+dfsg-2 (arm64) Fri, 08 Mar 2019 08:04:51 +0000 | +==============================================================================+ Package: libgkarrays Version: 2.1.0+dfsg-2 Source Version: 2.1.0+dfsg-2 Distribution: unstable Machine Architecture: amd64 Host Architecture: arm64 Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/unstable-amd64-sbuild-7e0a9374-7972-4797-bca4-7a40126e77ae' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Hit:1 http://debian.oregonstate.edu/debian unstable InRelease Get:2 http://debian.oregonstate.edu/debian unstable/main arm64 Packages [8137 kB] Fetched 8137 kB in 2s (4489 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'libgkarrays' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/libgkarrays.git Please use: git clone https://salsa.debian.org/med-team/libgkarrays.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 111 kB of source archives. Get:1 http://debian.oregonstate.edu/debian unstable/main libgkarrays 2.1.0+dfsg-2 (dsc) [2088 B] Get:2 http://debian.oregonstate.edu/debian unstable/main libgkarrays 2.1.0+dfsg-2 (tar) [97.9 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main libgkarrays 2.1.0+dfsg-2 (diff) [10.6 kB] Fetched 111 kB in 0s (0 B/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/libgkarrays-2fNMnt/libgkarrays-2.1.0+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/libgkarrays-2fNMnt' with '<>' +------------------------------------------------------------------------------+ | Install crossbuild-essential | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: build-essential:amd64, fakeroot:amd64, crossbuild-essential-arm64:amd64 Filtered Build-Depends: build-essential:amd64, fakeroot:amd64, crossbuild-essential-arm64:amd64 dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-Z0VeHy/apt_archive/sbuild-build-depends-core-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy dpkg-scanpackages: info: Wrote 1 entries to output Packages file. Ign:1 copy:/<>/resolver-Z0VeHy/apt_archive ./ InRelease Get:2 copy:/<>/resolver-Z0VeHy/apt_archive ./ Release [957 B] Ign:3 copy:/<>/resolver-Z0VeHy/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-Z0VeHy/apt_archive ./ Sources [362 B] Get:5 copy:/<>/resolver-Z0VeHy/apt_archive ./ Packages [454 B] Fetched 1773 B in 0s (104 kB/s) Reading package lists... Reading package lists... Install core build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: binutils-aarch64-linux-gnu cpp-8-aarch64-linux-gnu cpp-aarch64-linux-gnu cross-config crossbuild-essential-arm64 dpkg-cross file g++-8-aarch64-linux-gnu g++-aarch64-linux-gnu gcc-8-aarch64-linux-gnu gcc-8-aarch64-linux-gnu-base gcc-8-cross-base gcc-aarch64-linux-gnu libasan5-arm64-cross libatomic1-arm64-cross libc6-arm64-cross libc6-dev-arm64-cross libconfig-auto-perl libconfig-inifiles-perl libdebian-dpkgcross-perl libfile-homedir-perl libfile-which-perl libgcc-8-dev-arm64-cross libgcc1-arm64-cross libgomp1-arm64-cross libicu63 libio-string-perl libitm1-arm64-cross liblocale-gettext-perl liblsan0-arm64-cross libmagic-mgc libmagic1 libstdc++-8-dev-arm64-cross libstdc++6-arm64-cross libtsan0-arm64-cross libubsan1-arm64-cross libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev-arm64-cross sensible-utils ucf Suggested packages: binutils-doc gcc-8-locales cpp-doc binutils-multiarch gcc-8-doc libstdc++6-8-dbg-arm64-cross libgcc1-dbg-arm64-cross libgomp1-dbg-arm64-cross libitm1-dbg-arm64-cross libatomic1-dbg-arm64-cross libasan5-dbg-arm64-cross liblsan0-dbg-arm64-cross libtsan0-dbg-arm64-cross libubsan1-dbg-arm64-cross libmpx2-dbg-arm64-cross libquadmath0-dbg-arm64-cross manpages-dev autoconf automake libtool flex bison gdb-aarch64-linux-gnu gcc-doc libyaml-shell-perl Recommended packages: libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl The following NEW packages will be installed: binutils-aarch64-linux-gnu cpp-8-aarch64-linux-gnu cpp-aarch64-linux-gnu cross-config crossbuild-essential-arm64 dpkg-cross file g++-8-aarch64-linux-gnu g++-aarch64-linux-gnu gcc-8-aarch64-linux-gnu gcc-8-aarch64-linux-gnu-base gcc-8-cross-base gcc-aarch64-linux-gnu libasan5-arm64-cross libatomic1-arm64-cross libc6-arm64-cross libc6-dev-arm64-cross libconfig-auto-perl libconfig-inifiles-perl libdebian-dpkgcross-perl libfile-homedir-perl libfile-which-perl libgcc-8-dev-arm64-cross libgcc1-arm64-cross libgomp1-arm64-cross libicu63 libio-string-perl libitm1-arm64-cross liblocale-gettext-perl liblsan0-arm64-cross libmagic-mgc libmagic1 libstdc++-8-dev-arm64-cross libstdc++6-arm64-cross libtsan0-arm64-cross libubsan1-arm64-cross libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev-arm64-cross sbuild-build-depends-core-dummy:arm64 sensible-utils ucf 0 upgraded, 47 newly installed, 0 to remove and 0 not upgraded. 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cpp-8-aarch64-linux-gnu amd64 8.3.0-2cross1 [6251 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-aarch64-linux-gnu amd64 4:8.3.0-1 [16.5 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 cross-config all 2.6.15-2 [39.7 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-8-cross-base all 8.3.0-2cross1 [185 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-arm64-cross all 2.28-7cross1 [1312 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc1-arm64-cross all 1:8.3.0-2cross1 [34.2 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 libgomp1-arm64-cross all 8.3.0-2cross1 [66.3 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 libitm1-arm64-cross all 8.3.0-2cross1 [23.6 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libatomic1-arm64-cross all 8.3.0-2cross1 [8620 B] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++6-arm64-cross all 8.3.0-2cross1 [325 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 libasan5-arm64-cross all 8.3.0-2cross1 [321 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 liblsan0-arm64-cross all 8.3.0-2cross1 [117 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 libtsan0-arm64-cross all 8.3.0-2cross1 [255 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 libubsan1-arm64-cross all 8.3.0-2cross1 [110 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-8-dev-arm64-cross all 8.3.0-2cross1 [833 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-8-aarch64-linux-gnu amd64 8.3.0-2cross1 [6681 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-aarch64-linux-gnu amd64 4:8.3.0-1 [1456 B] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 linux-libc-dev-arm64-cross all 4.19.20-1cross1 [1209 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev-arm64-cross all 2.28-7cross1 [2322 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-8-dev-arm64-cross all 8.3.0-2cross1 [1484 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 g++-8-aarch64-linux-gnu amd64 8.3.0-2cross1 [6821 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 g++-aarch64-linux-gnu amd64 4:8.3.0-1 [1176 B] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-inifiles-perl all 3.000001-1 [51.9 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 libio-string-perl all 1.08-3 [12.3 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 libicu63 amd64 63.1-6 [8292 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 libxml2 amd64 2.9.4+dfsg1-7+b3 [687 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-1 [14.8 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-base-perl all 1.09-1 [20.4 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-perl all 1.00+dfsg-1 [58.6 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-libxml-perl amd64 2.0134+dfsg-1 [344 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-simple-perl all 2.25-1 [72.0 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-perl all 1.27-1 [66.8 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-auto-perl all 0.44-1 [19.5 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-which-perl all 1.23-1 [16.6 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-homedir-perl all 1.004-1 [42.7 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 libdebian-dpkgcross-perl all 2.6.15-2 [38.5 kB] Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-cross all 2.6.15-2 [49.3 kB] Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 crossbuild-essential-arm64 all 12.6 [6572 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 41.8 MB in 1s (54.1 MB/s) Selecting previously unselected package liblocale-gettext-perl. 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Setting up libmagic1:amd64 (1:5.35-4) ... Setting up libxml-namespacesupport-perl (1.12-1) ... Setting up binutils-aarch64-linux-gnu (2.31.1-15) ... Setting up file (1:5.35-4) ... Setting up libyaml-perl (1.27-1) ... Setting up libicu63:amd64 (63.1-6) ... Setting up gcc-8-aarch64-linux-gnu-base:amd64 (8.3.0-2cross1) ... Setting up libxml-sax-base-perl (1.09-1) ... Setting up libio-string-perl (1.08-3) ... Setting up cross-config (2.6.15-2) ... Setting up libc6-arm64-cross (2.28-7cross1) ... Setting up cpp-8-aarch64-linux-gnu (8.3.0-2cross1) ... Setting up libitm1-arm64-cross (8.3.0-2cross1) ... Setting up linux-libc-dev-arm64-cross (4.19.20-1cross1) ... Setting up sensible-utils (0.0.12) ... Setting up libfile-homedir-perl (1.004-1) ... Setting up libxml2:amd64 (2.9.4+dfsg1-7+b3) ... Setting up liblocale-gettext-perl (1.07-3+b4) ... Setting up libatomic1-arm64-cross (8.3.0-2cross1) ... Setting up libgcc1-arm64-cross (1:8.3.0-2cross1) ... Setting up libgomp1-arm64-cross (8.3.0-2cross1) ... Setting up libc6-dev-arm64-cross (2.28-7cross1) ... Setting up libstdc++6-arm64-cross (8.3.0-2cross1) ... Setting up cpp-aarch64-linux-gnu (4:8.3.0-1) ... Setting up ucf (3.0038+nmu1) ... Setting up liblsan0-arm64-cross (8.3.0-2cross1) ... Setting up libubsan1-arm64-cross (8.3.0-2cross1) ... Setting up libtsan0-arm64-cross (8.3.0-2cross1) ... Setting up libxml-sax-perl (1.00+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libasan5-arm64-cross (8.3.0-2cross1) ... Setting up libgcc-8-dev-arm64-cross (8.3.0-2cross1) ... Setting up libxml-libxml-perl (2.0134+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up gcc-8-aarch64-linux-gnu (8.3.0-2cross1) ... Setting up libstdc++-8-dev-arm64-cross (8.3.0-2cross1) ... Setting up libxml-simple-perl (2.25-1) ... Setting up gcc-aarch64-linux-gnu (4:8.3.0-1) ... Setting up g++-8-aarch64-linux-gnu (8.3.0-2cross1) ... Setting up libconfig-auto-perl (0.44-1) ... Setting up g++-aarch64-linux-gnu (4:8.3.0-1) ... Setting up libdebian-dpkgcross-perl (2.6.15-2) ... Setting up dpkg-cross (2.6.15-2) ... Setting up crossbuild-essential-arm64 (12.6) ... Setting up sbuild-build-depends-core-dummy:arm64 (0.invalid.0) ... Processing triggers for libc-bin (2.28-8) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (arm64 included in any) Setup apt archive ----------------- dpkg-deb: building package 'sbuild-build-depends-essential-dummy' in '/<>/resolver-Z0VeHy/apt_archive/sbuild-build-depends-essential-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-essential-dummy dpkg-scanpackages: info: Wrote 2 entries to output Packages file. Ign:1 copy:/<>/resolver-Z0VeHy/apt_archive ./ InRelease Get:2 copy:/<>/resolver-Z0VeHy/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-Z0VeHy/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-Z0VeHy/apt_archive ./ Sources [484 B] Get:5 copy:/<>/resolver-Z0VeHy/apt_archive ./ Packages [570 B] Fetched 2017 B in 0s (114 kB/s) Reading package lists... Reading package lists... Install essential build dependencies (apt-based resolver) --------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-essential-dummy:arm64 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 840 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-Z0VeHy/apt_archive ./ sbuild-build-depends-essential-dummy 0.invalid.0 [840 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 840 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-essential-dummy:arm64. (Reading database ... 15210 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-essential-dummy_0.invalid.0_arm64.deb ... Unpacking sbuild-build-depends-essential-dummy:arm64 (0.invalid.0) ... Setting up sbuild-build-depends-essential-dummy:arm64 (0.invalid.0) ... +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: libc-dev, libstdc++-dev, debhelper (>= 11~), d-shlibs, zlib1g-dev Filtered Build-Depends: libc-dev, libstdc++-dev, debhelper (>= 11~), d-shlibs, zlib1g-dev dpkg-deb: building package 'sbuild-build-depends-libgkarrays-dummy' in '/<>/resolver-Z0VeHy/apt_archive/sbuild-build-depends-libgkarrays-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-essential-dummy sbuild-build-depends-libgkarrays-dummy dpkg-scanpackages: info: Wrote 3 entries to output Packages file. Ign:1 copy:/<>/resolver-Z0VeHy/apt_archive ./ InRelease Get:2 copy:/<>/resolver-Z0VeHy/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-Z0VeHy/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-Z0VeHy/apt_archive ./ Sources [652 B] Get:5 copy:/<>/resolver-Z0VeHy/apt_archive ./ Packages [732 B] Fetched 2347 B in 0s (0 B/s) Reading package lists... Reading package lists... Install libgkarrays build dependencies (apt-based resolver) ----------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils d-shlibs debhelper dh-autoreconf dh-strip-nondeterminism dwz gcc-8-base:arm64 gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan5:arm64 libatomic1:arm64 libbsd0 libc6:arm64 libc6-dev:arm64 libcroco3 libelf1 libfile-stripnondeterminism-perl libgcc-8-dev:arm64 libgcc1:arm64 libglib2.0-0 libgomp1:arm64 libitm1:arm64 liblsan0:arm64 libncurses6 libpipeline1 libsigsegv2 libstdc++-8-dev:arm64 libstdc++6:arm64 libtool libtsan0:arm64 libubsan1:arm64 libuchardet0 linux-libc-dev:arm64 m4 man-db po-debconf zlib1g:arm64 zlib1g-dev:arm64 Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff glibc-doc:arm64 libc-l10n:arm64 locales:arm64 manpages-dev:arm64 libstdc++-8-doc:arm64 libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libidn2-0:arm64 libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libgpm2 libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils d-shlibs debhelper dh-autoreconf dh-strip-nondeterminism dwz gcc-8-base:arm64 gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan5:arm64 libatomic1:arm64 libbsd0 libc6:arm64 libc6-dev:arm64 libcroco3 libelf1 libfile-stripnondeterminism-perl libgcc-8-dev:arm64 libgcc1:arm64 libglib2.0-0 libgomp1:arm64 libitm1:arm64 liblsan0:arm64 libncurses6 libpipeline1 libsigsegv2 libstdc++-8-dev:arm64 libstdc++6:arm64 libtool libtsan0:arm64 libubsan1:arm64 libuchardet0 linux-libc-dev:arm64 m4 man-db po-debconf sbuild-build-depends-libgkarrays-dummy:arm64 zlib1g:arm64 zlib1g-dev:arm64 0 upgraded, 46 newly installed, 0 to remove and 0 not upgraded. Need to get 19.7 MB of archives. After this operation, 93.4 MB of additional disk space will be used. Get:1 copy:/<>/resolver-Z0VeHy/apt_archive ./ sbuild-build-depends-libgkarrays-dummy 0.invalid.0 [892 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 libbsd0 amd64 0.9.1-2 [99.5 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 bsdmainutils amd64 11.1.2+b1 [191 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 libuchardet0 amd64 0.0.6-3 [64.9 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 groff-base amd64 1.22.4-3 [916 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 libpipeline1 amd64 1.5.1-2 [31.2 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 man-db amd64 2.8.5-2 [1274 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 gettext-base amd64 0.19.8.1-9 [123 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 m4 amd64 1.4.18-2 [203 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 autoconf all 2.69-11 [341 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 automake all 1:1.16.1-4 [771 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 autopoint all 0.19.8.1-9 [434 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 d-shlibs all 0.84 [17.2 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 libtool all 2.4.6-10 [547 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 dh-autoreconf all 19 [16.9 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libarchive-zip-perl all 1.64-1 [96.8 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.1.1-1 [19.7 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 dh-strip-nondeterminism all 1.1.1-1 [13.0 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 libelf1 amd64 0.176-1 [160 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 dwz amd64 0.12-3 [78.0 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 libglib2.0-0 amd64 2.58.3-1 [1258 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 libcroco3 amd64 0.6.12-3 [145 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 libncurses6 amd64 6.1+20181013-2 [102 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 gettext amd64 0.19.8.1-9 [1303 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 po-debconf all 1.0.21 [248 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 debhelper all 12.1.1 [1016 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main arm64 gcc-8-base arm64 8.3.0-2 [190 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main arm64 libgcc1 arm64 1:8.3.0-2 [34.3 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main arm64 libc6 arm64 2.28-8 [2522 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main arm64 libstdc++6 arm64 8.3.0-2 [362 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main arm64 libasan5 arm64 8.3.0-2 [328 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main arm64 libatomic1 arm64 8.3.0-2 [8812 B] Get:36 http://debian.oregonstate.edu/debian unstable/main arm64 linux-libc-dev arm64 4.19.20-1 [1121 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main arm64 libc6-dev arm64 2.28-8 [2325 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main arm64 libgomp1 arm64 8.3.0-2 [67.8 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main arm64 libitm1 arm64 8.3.0-2 [24.0 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main arm64 liblsan0 arm64 8.3.0-2 [118 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main arm64 libtsan0 arm64 8.3.0-2 [262 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main arm64 libubsan1 arm64 8.3.0-2 [111 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main arm64 libgcc-8-dev arm64 8.3.0-2 [828 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main arm64 libstdc++-8-dev arm64 8.3.0-2 [1503 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main arm64 zlib1g arm64 1:1.2.11.dfsg-1 [89.3 kB] Get:46 http://debian.oregonstate.edu/debian unstable/main arm64 zlib1g-dev arm64 1:1.2.11.dfsg-1 [210 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 19.7 MB in 0s (71.8 MB/s) Selecting previously unselected package libbsd0:amd64. (Reading database ... 15210 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.9.1-2_amd64.deb ... Unpacking libbsd0:amd64 (0.9.1-2) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2+b1_amd64.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../02-libuchardet0_0.0.6-3_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../03-groff-base_1.22.4-3_amd64.deb ... Unpacking groff-base (1.22.4-3) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../04-libpipeline1_1.5.1-2_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../05-man-db_2.8.5-2_amd64.deb ... Unpacking man-db (2.8.5-2) ... Selecting previously unselected package gettext-base. Preparing to unpack .../06-gettext-base_0.19.8.1-9_amd64.deb ... Unpacking gettext-base (0.19.8.1-9) ... Selecting previously unselected package libsigsegv2:amd64. Preparing to unpack .../07-libsigsegv2_2.12-2_amd64.deb ... Unpacking libsigsegv2:amd64 (2.12-2) ... Selecting previously unselected package m4. Preparing to unpack .../08-m4_1.4.18-2_amd64.deb ... Unpacking m4 (1.4.18-2) ... Selecting previously unselected package autoconf. Preparing to unpack .../09-autoconf_2.69-11_all.deb ... Unpacking autoconf (2.69-11) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../10-autotools-dev_20180224.1_all.deb ... Unpacking autotools-dev (20180224.1) ... Selecting previously unselected package automake. Preparing to unpack .../11-automake_1%3a1.16.1-4_all.deb ... Unpacking automake (1:1.16.1-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../12-autopoint_0.19.8.1-9_all.deb ... Unpacking autopoint (0.19.8.1-9) ... 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Selecting previously unselected package libelf1:amd64. Preparing to unpack .../19-libelf1_0.176-1_amd64.deb ... Unpacking libelf1:amd64 (0.176-1) ... Selecting previously unselected package dwz. Preparing to unpack .../20-dwz_0.12-3_amd64.deb ... Unpacking dwz (0.12-3) ... Selecting previously unselected package libglib2.0-0:amd64. Preparing to unpack .../21-libglib2.0-0_2.58.3-1_amd64.deb ... Unpacking libglib2.0-0:amd64 (2.58.3-1) ... Selecting previously unselected package libcroco3:amd64. Preparing to unpack .../22-libcroco3_0.6.12-3_amd64.deb ... Unpacking libcroco3:amd64 (0.6.12-3) ... Selecting previously unselected package libncurses6:amd64. Preparing to unpack .../23-libncurses6_6.1+20181013-2_amd64.deb ... Unpacking libncurses6:amd64 (6.1+20181013-2) ... Selecting previously unselected package gettext. Preparing to unpack .../24-gettext_0.19.8.1-9_amd64.deb ... Unpacking gettext (0.19.8.1-9) ... Selecting previously unselected package intltool-debian. 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Selecting previously unselected package zlib1g-dev:arm64. Preparing to unpack .../44-zlib1g-dev_1%3a1.2.11.dfsg-1_arm64.deb ... Unpacking zlib1g-dev:arm64 (1:1.2.11.dfsg-1) ... Selecting previously unselected package sbuild-build-depends-libgkarrays-dummy:arm64. Preparing to unpack .../45-sbuild-build-depends-libgkarrays-dummy_0.invalid.0_arm64.deb ... Unpacking sbuild-build-depends-libgkarrays-dummy:arm64 (0.invalid.0) ... Setting up libpipeline1:amd64 (1.5.1-2) ... Setting up libarchive-zip-perl (1.64-1) ... Setting up libglib2.0-0:amd64 (2.58.3-1) ... No schema files found: doing nothing. Setting up linux-libc-dev:arm64 (4.19.20-1) ... Setting up gettext-base (0.19.8.1-9) ... Setting up autotools-dev (20180224.1) ... Setting up libncurses6:amd64 (6.1+20181013-2) ... Setting up libsigsegv2:amd64 (2.12-2) ... Setting up gcc-8-base:arm64 (8.3.0-2) ... Setting up autopoint (0.19.8.1-9) ... Setting up libcroco3:amd64 (0.6.12-3) ... Setting up d-shlibs (0.84) ... Setting up libuchardet0:amd64 (0.0.6-3) ... Setting up libbsd0:amd64 (0.9.1-2) ... Setting up libelf1:amd64 (0.176-1) ... Setting up libfile-stripnondeterminism-perl (1.1.1-1) ... Setting up gettext (0.19.8.1-9) ... Setting up libtool (2.4.6-10) ... Setting up m4 (1.4.18-2) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up autoconf (2.69-11) ... Setting up dwz (0.12-3) ... Setting up groff-base (1.22.4-3) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up po-debconf (1.0.21) ... Setting up man-db (2.8.5-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libc6:arm64 (2.28-8) ... Setting up libc6-dev:arm64 (2.28-8) ... Setting up libitm1:arm64 (8.3.0-2) ... Setting up libgcc1:arm64 (1:8.3.0-2) ... Setting up zlib1g:arm64 (1:1.2.11.dfsg-1) ... Setting up libgomp1:arm64 (8.3.0-2) ... Setting up dh-autoreconf (19) ... Setting up libatomic1:arm64 (8.3.0-2) ... Setting up zlib1g-dev:arm64 (1:1.2.11.dfsg-1) ... Setting up libstdc++6:arm64 (8.3.0-2) ... Setting up liblsan0:arm64 (8.3.0-2) ... Setting up libtsan0:arm64 (8.3.0-2) ... Setting up debhelper (12.1.1) ... Setting up libasan5:arm64 (8.3.0-2) ... Setting up libubsan1:arm64 (8.3.0-2) ... Setting up dh-strip-nondeterminism (1.1.1-1) ... Setting up libgcc-8-dev:arm64 (8.3.0-2) ... Setting up libstdc++-8-dev:arm64 (8.3.0-2) ... Setting up sbuild-build-depends-libgkarrays-dummy:arm64 (0.invalid.0) ... Processing triggers for libc-bin (2.28-8) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.9.0-8-amd64 amd64 (x86_64) Toolchain package versions: binutils_2.31.1-15 dpkg-dev_1.19.5 g++-8_8.3.0-2 gcc-8_8.3.0-2 libc6-dev_2.28-8 libstdc++-8-dev_8.3.0-2 libstdc++-8-dev-arm64-cross_8.3.0-2cross1 libstdc++6_8.3.0-2 libstdc++6-arm64-cross_8.3.0-2cross1 linux-libc-dev_4.19.20-1 Package versions: adduser_3.118 apt_1.8.0~rc4 autoconf_2.69-11 automake_1:1.16.1-4 autopoint_0.19.8.1-9 autotools-dev_20180224.1 base-files_10.1 base-passwd_3.5.46 bash_5.0-2 binutils_2.31.1-15 binutils-aarch64-linux-gnu_2.31.1-15 binutils-common_2.31.1-15 binutils-x86-64-linux-gnu_2.31.1-15 bsdmainutils_11.1.2+b1 bsdutils_1:2.33.1-0.1 build-essential_12.6 bzip2_1.0.6-9 coreutils_8.30-3 cpp_4:8.3.0-1 cpp-8_8.3.0-2 cpp-8-aarch64-linux-gnu_8.3.0-2cross1 cpp-aarch64-linux-gnu_4:8.3.0-1 cross-config_2.6.15-2 crossbuild-essential-arm64_12.6 d-shlibs_0.84 dash_0.5.10.2-5 debconf_1.5.71 debhelper_12.1.1 debian-archive-keyring_2018.1 debianutils_4.8.6.1 dh-autoreconf_19 dh-strip-nondeterminism_1.1.1-1 diffutils_1:3.7-2 dpkg_1.19.5 dpkg-cross_2.6.15-2 dpkg-dev_1.19.5 dwz_0.12-3 e2fsprogs_1.45.0-1 fakeroot_1.23-1 fdisk_2.33.1-0.1 file_1:5.35-4 findutils_4.6.0+git+20190209-2 g++_4:8.3.0-1 g++-8_8.3.0-2 g++-8-aarch64-linux-gnu_8.3.0-2cross1 g++-aarch64-linux-gnu_4:8.3.0-1 gcc_4:8.3.0-1 gcc-8_8.3.0-2 gcc-8-aarch64-linux-gnu_8.3.0-2cross1 gcc-8-aarch64-linux-gnu-base_8.3.0-2cross1 gcc-8-base_8.3.0-2 gcc-8-cross-base_8.3.0-2cross1 gcc-aarch64-linux-gnu_4:8.3.0-1 gettext_0.19.8.1-9 gettext-base_0.19.8.1-9 gpgv_2.2.13-1 grep_3.3-1 groff-base_1.22.4-3 gzip_1.9-3 hostname_3.21 init-system-helpers_1.56+nmu1 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-4 libapt-pkg5.0_1.8.0~rc4 libarchive-zip-perl_1.64-1 libasan5_8.3.0-2 libasan5-arm64-cross_8.3.0-2cross1 libatomic1_8.3.0-2 libatomic1-arm64-cross_8.3.0-2cross1 libattr1_1:2.4.48-4 libaudit-common_1:2.8.4-2 libaudit1_1:2.8.4-2 libbinutils_2.31.1-15 libblkid1_2.33.1-0.1 libbsd0_0.9.1-2 libbz2-1.0_1.0.6-9 libc-bin_2.28-8 libc-dev-bin_2.28-8 libc6_2.28-8 libc6-arm64-cross_2.28-7cross1 libc6-dev_2.28-8 libc6-dev-arm64-cross_2.28-7cross1 libcap-ng0_0.7.9-2 libcc1-0_8.3.0-2 libcom-err2_1.45.0-1 libconfig-auto-perl_0.44-1 libconfig-inifiles-perl_3.000001-1 libcroco3_0.6.12-3 libdb5.3_5.3.28+dfsg1-0.5 libdebconfclient0_0.248 libdebian-dpkgcross-perl_2.6.15-2 libdpkg-perl_1.19.5 libelf1_0.176-1 libext2fs2_1.45.0-1 libfakeroot_1.23-1 libfdisk1_2.33.1-0.1 libffi6_3.2.1-9 libfile-homedir-perl_1.004-1 libfile-stripnondeterminism-perl_1.1.1-1 libfile-which-perl_1.23-1 libgcc-8-dev_8.3.0-2 libgcc-8-dev-arm64-cross_8.3.0-2cross1 libgcc1_1:8.3.0-2 libgcc1-arm64-cross_1:8.3.0-2cross1 libgcrypt20_1.8.4-5 libgdbm-compat4_1.18.1-3 libgdbm6_1.18.1-3 libglib2.0-0_2.58.3-1 libgmp10_2:6.1.2+dfsg-4 libgnutls30_3.6.6-2 libgomp1_8.3.0-2 libgomp1-arm64-cross_8.3.0-2cross1 libgpg-error0_1.35-1 libhogweed4_3.4.1-1 libicu63_63.1-6 libidn2-0_2.0.5-1 libio-string-perl_1.08-3 libisl19_0.20-2 libitm1_8.3.0-2 libitm1-arm64-cross_8.3.0-2cross1 liblocale-gettext-perl_1.07-3+b4 liblsan0_8.3.0-2 liblsan0-arm64-cross_8.3.0-2cross1 liblz4-1_1.8.3-1 liblzma5_5.2.4-1 libmagic-mgc_1:5.35-4 libmagic1_1:5.35-4 libmount1_2.33.1-0.1 libmpc3_1.1.0-1 libmpfr6_4.0.2-1 libmpx2_8.3.0-2 libncurses6_6.1+20181013-2 libncursesw6_6.1+20181013-2 libnettle6_3.4.1-1 libp11-kit0_0.23.15-2 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpcre3_2:8.39-12 libperl5.28_5.28.1-4 libpipeline1_1.5.1-2 libquadmath0_8.3.0-2 libseccomp2_2.3.3-4 libselinux1_2.8-1+b1 libsemanage-common_2.8-2 libsemanage1_2.8-2 libsepol1_2.8-1 libsigsegv2_2.12-2 libsmartcols1_2.33.1-0.1 libss2_1.45.0-1 libstdc++-8-dev_8.3.0-2 libstdc++-8-dev-arm64-cross_8.3.0-2cross1 libstdc++6_8.3.0-2 libstdc++6-arm64-cross_8.3.0-2cross1 libsystemd0_241-1 libtasn1-6_4.13-3 libtinfo6_6.1+20181013-2 libtool_2.4.6-10 libtsan0_8.3.0-2 libtsan0-arm64-cross_8.3.0-2cross1 libubsan1_8.3.0-2 libubsan1-arm64-cross_8.3.0-2cross1 libuchardet0_0.0.6-3 libudev1_241-1 libunistring2_0.9.10-1 libuuid1_2.33.1-0.1 libxml-libxml-perl_2.0134+dfsg-1 libxml-namespacesupport-perl_1.12-1 libxml-sax-base-perl_1.09-1 libxml-sax-perl_1.00+dfsg-1 libxml-simple-perl_2.25-1 libxml2_2.9.4+dfsg1-7+b3 libyaml-perl_1.27-1 libzstd1_1.3.8+dfsg-3 linux-libc-dev_4.19.20-1 linux-libc-dev-arm64-cross_4.19.20-1cross1 login_1:4.5-1.1 m4_1.4.18-2 make_4.2.1-1.2 man-db_2.8.5-2 mawk_1.3.3-17+b3 mount_2.33.1-0.1 ncurses-base_6.1+20181013-2 ncurses-bin_6.1+20181013-2 passwd_1:4.5-1.1 patch_2.7.6-3 perl_5.28.1-4 perl-base_5.28.1-4 perl-modules-5.28_5.28.1-4 po-debconf_1.0.21 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-essential-dummy_0.invalid.0 sbuild-build-depends-libgkarrays-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12 sysvinit-utils_2.93-8 tar_1.30+dfsg-5 tzdata_2018i-2 ucf_3.0038+nmu1 util-linux_2.33.1-0.1 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-1 zlib1g-dev_1:1.2.11.dfsg-1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Tue Jul 17 19:10:58 2018 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./libgkarrays_2.1.0+dfsg-2.dsc dpkg-source: info: extracting libgkarrays in /<>/libgkarrays-2.1.0+dfsg dpkg-source: info: unpacking libgkarrays_2.1.0+dfsg.orig.tar.xz dpkg-source: info: unpacking libgkarrays_2.1.0+dfsg-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying proper_soname.patch dpkg-source: info: applying fix_pkg-config.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.arm64 DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=POSIX LOGNAME=helmut PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1003 SCHROOT_GROUP=helmut SCHROOT_SESSION_ID=unstable-amd64-sbuild-7e0a9374-7972-4797-bca4-7a40126e77ae SCHROOT_UID=1003 SCHROOT_USER=helmut SHELL=/bin/sh USER=helmut dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package libgkarrays dpkg-buildpackage: info: source version 2.1.0+dfsg-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-architecture: warning: specified GNU system type aarch64-linux-gnu does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 fakeroot debian/rules clean dh clean dh_clean debian/rules build-arch dh build-arch dh_update_autotools_config -a dh_autoreconf -a aclocal: warning: couldn't open directory 'config/m4': No such file or directory aclocal: warning: autoconf input should be named 'configure.ac', not 'configure.in' aclocal: warning: couldn't open directory 'm4': No such file or directory libtoolize: putting auxiliary files in '.'. libtoolize: copying file './ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'. libtoolize: copying file 'm4/libtool.m4' libtoolize: copying file 'm4/ltoptions.m4' libtoolize: copying file 'm4/ltsugar.m4' libtoolize: copying file 'm4/ltversion.m4' libtoolize: copying file 'm4/lt~obsolete.m4' aclocal: warning: autoconf input should be named 'configure.ac', not 'configure.in' automake: warning: autoconf input should be named 'configure.ac', not 'configure.in' configure.in:32: installing './compile' configure.in:32: installing './config.guess' configure.in:32: installing './config.sub' configure.in:31: installing './install-sh' configure.in:31: installing './missing' automake: warning: autoconf input should be named 'configure.ac', not 'configure.in' doc/Makefile.am:2: warning: suffix '.texinfo' for Texinfo files is discouraged; use '.texi' instead doc/Makefile.am:2: installing 'doc/texinfo.tex' libProgressBar/Makefile.am: installing './depcomp' libtoolize: putting auxiliary files in AC_CONFIG_AUX_DIR, 'config'. libtoolize: copying file 'config/ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'config/m4'. libtoolize: copying file 'config/m4/libtool.m4' libtoolize: copying file 'config/m4/ltoptions.m4' libtoolize: copying file 'config/m4/ltsugar.m4' libtoolize: copying file 'config/m4/ltversion.m4' libtoolize: copying file 'config/m4/lt~obsolete.m4' configure.ac:213: installing 'config/compile' configure.ac:231: installing 'config/config.guess' configure.ac:231: installing 'config/config.sub' configure.ac:206: installing 'config/install-sh' configure.ac:206: installing 'config/missing' doc/Makefile.am:107: installing 'config/texinfo.tex' src/Makefile.am:117: warning: source file '$(SUX_DIR)/rank9b.cpp' is in a subdirectory, src/Makefile.am:117: but option 'subdir-objects' is disabled automake: warning: possible forward-incompatibility. automake: At least a source file is in a subdirectory, but the 'subdir-objects' automake: automake option hasn't been enabled. For now, the corresponding output automake: object file(s) will be placed in the top-level directory. However, automake: this behaviour will change in future Automake versions: they will automake: unconditionally cause object files to be placed in the same subdirectory automake: of the corresponding sources. automake: You are advised to start using 'subdir-objects' option throughout your automake: project, to avoid future incompatibilities. src/Makefile.am: installing 'config/depcomp' tests/Makefile.am:125: warning: wildcard dataset/*.fa: non-POSIX variable name tests/Makefile.am:125: (probably a GNU make extension) parallel-tests: installing 'config/test-driver' dh_auto_configure -a ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/aarch64-linux-gnu --libexecdir=\${prefix}/lib/aarch64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --host=aarch64-linux-gnu configure: loading site script /etc/dpkg-cross/cross-config.arm64 Reading Cross Config Cache (/etc/dpkg-cross/cross-config.arm64) Reading /etc/dpkg-cross/cross-config.cache checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for aarch64-linux-gnu-strip... aarch64-linux-gnu-strip checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for aarch64-linux-gnu-g++... aarch64-linux-gnu-g++ checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... yes checking for suffix of object files... o checking whether we are using the GNU C++ compiler... yes checking whether aarch64-linux-gnu-g++ accepts -g... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of aarch64-linux-gnu-g++... none checking for gawk... (cached) mawk checking for aarch64-linux-gnu-gcc... aarch64-linux-gnu-gcc checking whether we are using the GNU C compiler... yes checking whether aarch64-linux-gnu-gcc accepts -g... yes checking for aarch64-linux-gnu-gcc option to accept ISO C89... none needed checking whether aarch64-linux-gnu-gcc understands -c and -o together... yes checking dependency style of aarch64-linux-gnu-gcc... none checking how to run the C preprocessor... aarch64-linux-gnu-gcc -E checking whether ln -s works... yes checking whether make sets $(MAKE)... (cached) yes checking for texi2dvi... no checking for pdftex... no checking for kpsewhich... no configure: WARNING: The 'texi2dvi' or 'pdftex' program could not be found. This isn't critical, but it means that you won't be able to create the documentation and thus to make releases. configure: WARNING: The 'texi2dvi' or 'pdftex' is missing a correct latex installation. This isn't critical, but it means that you won't be able to create the documentation and thus to make releases. checking build system type... x86_64-pc-linux-gnu checking host system type... aarch64-unknown-linux-gnu checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by aarch64-linux-gnu-gcc... /usr/aarch64-linux-gnu/bin/ld checking if the linker (/usr/aarch64-linux-gnu/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/aarch64-linux-gnu-nm -B checking the name lister (/usr/bin/aarch64-linux-gnu-nm -B) interface... BSD nm checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-pc-linux-gnu file names to aarch64-unknown-linux-gnu format... func_convert_file_noop checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/aarch64-linux-gnu/bin/ld option to reload object files... -r checking for aarch64-linux-gnu-objdump... aarch64-linux-gnu-objdump checking how to recognize dependent libraries... pass_all checking for aarch64-linux-gnu-dlltool... no checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for aarch64-linux-gnu-ar... aarch64-linux-gnu-ar checking for archiver @FILE support... @ checking for aarch64-linux-gnu-strip... (cached) aarch64-linux-gnu-strip checking for aarch64-linux-gnu-ranlib... aarch64-linux-gnu-ranlib checking command to parse /usr/bin/aarch64-linux-gnu-nm -B output from aarch64-linux-gnu-gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for aarch64-linux-gnu-mt... no checking for mt... no checking if : is a manifest tool... no checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if aarch64-linux-gnu-gcc supports -fno-rtti -fno-exceptions... no checking for aarch64-linux-gnu-gcc option to produce PIC... -fPIC -DPIC checking if aarch64-linux-gnu-gcc PIC flag -fPIC -DPIC works... yes checking if aarch64-linux-gnu-gcc static flag -static works... yes checking if aarch64-linux-gnu-gcc supports -c -o file.o... yes checking if aarch64-linux-gnu-gcc supports -c -o file.o... (cached) yes checking whether the aarch64-linux-gnu-gcc linker (/usr/aarch64-linux-gnu/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking how to run the C++ preprocessor... aarch64-linux-gnu-g++ -E checking for ld used by aarch64-linux-gnu-g++... /usr/aarch64-linux-gnu/bin/ld checking if the linker (/usr/aarch64-linux-gnu/bin/ld) is GNU ld... yes checking whether the aarch64-linux-gnu-g++ linker (/usr/aarch64-linux-gnu/bin/ld) supports shared libraries... yes checking for aarch64-linux-gnu-g++ option to produce PIC... -fPIC -DPIC checking if aarch64-linux-gnu-g++ PIC flag -fPIC -DPIC works... yes checking if aarch64-linux-gnu-g++ static flag -static works... yes checking if aarch64-linux-gnu-g++ supports -c -o file.o... yes checking if aarch64-linux-gnu-g++ supports -c -o file.o... (cached) yes checking whether the aarch64-linux-gnu-g++ linker (/usr/aarch64-linux-gnu/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for ld used by aarch64-linux-gnu-gcc... (cached) /usr/aarch64-linux-gnu/bin/ld checking if the linker (/usr/aarch64-linux-gnu/bin/ld) is GNU ld... (cached) yes checking for dpkg... /usr/bin/dpkg checking for stdint.h... (cached) yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking for inline... inline checking for stdlib.h... (cached) yes checking for GNU libc compatible malloc... (cached) yes checking for stdlib.h... (cached) yes checking for GNU libc compatible realloc... (cached) yes checking for gettimeofday... yes checking for memset... yes checking for select... yes checking for stdbool.h that conforms to C99... yes checking for _Bool... yes checking for size_t... yes checking for uint8_t... yes checking for uint32_t... yes checking for uint64_t... yes checking for unsigned long long int... yes checking for gzread in -lz... yes checking for pthread_create in -lpthread... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating postinst chmod: cannot access 'prerm': No such file or directory config.status: creating prerm config.status: creating control config.status: creating libGkArrays.pc config.status: creating Makefile config.status: creating src/Makefile config.status: creating tests/Makefile config.status: creating src/sux/Makefile config.status: creating src/kseq/Makefile config.status: creating doc/Makefile config.status: creating doc/libGkArrays.3 config.status: creating doc/package.texi config.status: creating config/config.h config.status: executing depfiles commands config.status: executing libtool commands === configuring in src/libProgressBar-1.2.0 (/<>/libgkarrays-2.1.0+dfsg/src/libProgressBar-1.2.0) configure: running /bin/bash ./configure --disable-option-checking '--prefix=/usr' '--build=x86_64-linux-gnu' '--includedir=${prefix}/include' '--mandir=${prefix}/share/man' '--infodir=${prefix}/share/info' '--sysconfdir=/etc' '--localstatedir=/var' '--disable-silent-rules' '--libdir=${prefix}/lib/aarch64-linux-gnu' '--libexecdir=${prefix}/lib/aarch64-linux-gnu' '--runstatedir=/run' '--disable-maintainer-mode' '--disable-dependency-tracking' '--host=aarch64-linux-gnu' 'build_alias=x86_64-linux-gnu' 'host_alias=aarch64-linux-gnu' 'CXXFLAGS=-g -O2 -fdebug-prefix-map=/<>/libgkarrays-2.1.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security' 'LDFLAGS=-Wl,-z,relro -Wl,-z,now' 'CPPFLAGS=-Wdate-time -D_FORTIFY_SOURCE=2' 'CFLAGS=-g -O2 -fdebug-prefix-map=/<>/libgkarrays-2.1.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security' --cache-file=/dev/null --srcdir=. configure: loading site script /etc/dpkg-cross/cross-config.arm64 Reading Cross Config Cache (/etc/dpkg-cross/cross-config.arm64) Reading /etc/dpkg-cross/cross-config.cache checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for aarch64-linux-gnu-strip... aarch64-linux-gnu-strip checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking build system type... x86_64-pc-linux-gnu checking host system type... aarch64-unknown-linux-gnu checking how to print strings... printf checking whether make supports the include directive... yes (GNU style) checking for aarch64-linux-gnu-gcc... aarch64-linux-gnu-gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... yes checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether aarch64-linux-gnu-gcc accepts -g... yes checking for aarch64-linux-gnu-gcc option to accept ISO C89... none needed checking whether aarch64-linux-gnu-gcc understands -c and -o together... yes checking dependency style of aarch64-linux-gnu-gcc... none checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by aarch64-linux-gnu-gcc... /usr/aarch64-linux-gnu/bin/ld checking if the linker (/usr/aarch64-linux-gnu/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/aarch64-linux-gnu-nm -B checking the name lister (/usr/bin/aarch64-linux-gnu-nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-pc-linux-gnu file names to aarch64-unknown-linux-gnu format... func_convert_file_noop checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/aarch64-linux-gnu/bin/ld option to reload object files... -r checking for aarch64-linux-gnu-objdump... aarch64-linux-gnu-objdump checking how to recognize dependent libraries... pass_all checking for aarch64-linux-gnu-dlltool... no checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for aarch64-linux-gnu-ar... aarch64-linux-gnu-ar checking for archiver @FILE support... @ checking for aarch64-linux-gnu-strip... (cached) aarch64-linux-gnu-strip checking for aarch64-linux-gnu-ranlib... aarch64-linux-gnu-ranlib checking command to parse /usr/bin/aarch64-linux-gnu-nm -B output from aarch64-linux-gnu-gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for aarch64-linux-gnu-mt... no checking for mt... no checking if : is a manifest tool... no checking how to run the C preprocessor... aarch64-linux-gnu-gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if aarch64-linux-gnu-gcc supports -fno-rtti -fno-exceptions... no checking for aarch64-linux-gnu-gcc option to produce PIC... -fPIC -DPIC checking if aarch64-linux-gnu-gcc PIC flag -fPIC -DPIC works... yes checking if aarch64-linux-gnu-gcc static flag -static works... yes checking if aarch64-linux-gnu-gcc supports -c -o file.o... yes checking if aarch64-linux-gnu-gcc supports -c -o file.o... (cached) yes checking whether the aarch64-linux-gnu-gcc linker (/usr/aarch64-linux-gnu/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for aarch64-linux-gnu-gcc... (cached) aarch64-linux-gnu-gcc checking whether we are using the GNU C compiler... (cached) yes checking whether aarch64-linux-gnu-gcc accepts -g... (cached) yes checking for aarch64-linux-gnu-gcc option to accept ISO C89... (cached) none needed checking whether aarch64-linux-gnu-gcc understands -c and -o together... (cached) yes checking dependency style of aarch64-linux-gnu-gcc... (cached) none checking for aarch64-linux-gnu-g++... aarch64-linux-gnu-g++ checking whether we are using the GNU C++ compiler... yes checking whether aarch64-linux-gnu-g++ accepts -g... yes checking dependency style of aarch64-linux-gnu-g++... none checking how to run the C++ preprocessor... aarch64-linux-gnu-g++ -E checking for ld used by aarch64-linux-gnu-g++... /usr/aarch64-linux-gnu/bin/ld checking if the linker (/usr/aarch64-linux-gnu/bin/ld) is GNU ld... yes checking whether the aarch64-linux-gnu-g++ linker (/usr/aarch64-linux-gnu/bin/ld) supports shared libraries... yes checking for aarch64-linux-gnu-g++ option to produce PIC... -fPIC -DPIC checking if aarch64-linux-gnu-g++ PIC flag -fPIC -DPIC works... yes checking if aarch64-linux-gnu-g++ static flag -static works... yes checking if aarch64-linux-gnu-g++ supports -c -o file.o... yes checking if aarch64-linux-gnu-g++ supports -c -o file.o... (cached) yes checking whether the aarch64-linux-gnu-g++ linker (/usr/aarch64-linux-gnu/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for dpkg... /usr/bin/dpkg checking for rpmbuild... no checking for rpm... no checking for texi2dvi... no checking for pdftex... no checking for kpsewhich... no configure: WARNING: The 'texi2dvi' or 'pdftex' program could not be found. This isn't critical, but it means that you won't be able to create the documentation and thus to make releases. configure: WARNING: The 'texi2dvi' or 'pdftex' is missing a correct latex installation. This isn't critical, but it means that you won't be able to create the documentation and thus to make releases. checking for an ANSI C-conforming const... yes checking for inline... inline checking whether sys/types.h defines makedev... no checking sys/mkdev.h usability... no checking sys/mkdev.h presence... no checking for sys/mkdev.h... no checking sys/sysmacros.h usability... yes checking sys/sysmacros.h presence... yes checking for sys/sysmacros.h... yes checking for size_t... yes checking for working alloca.h... yes checking for alloca... yes checking whether struct tm is in sys/time.h or time.h... time.h checking for struct stat.st_blocks... yes checking whether ln -s works... yes checking for ANSI C header files... (cached) yes checking for unistd.h... (cached) yes checking sys/param.h usability... yes checking sys/param.h presence... yes checking for sys/param.h... yes checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking time.h usability... yes checking time.h presence... yes checking for time.h... yes checking for sys/sysmacros.h... (cached) yes checking for string.h... (cached) yes checking for strings.h... (cached) yes checking for memory.h... (cached) yes checking fcntl.h usability... yes checking fcntl.h presence... yes checking for fcntl.h... yes checking alloca.h usability... yes checking alloca.h presence... yes checking for alloca.h... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating postinst chmod: cannot access 'prerm': No such file or directory config.status: creating prerm config.status: creating libProgressBar.lsm config.status: creating libProgressBar.spec config.status: creating control config.status: creating libProgressBar.pc config.status: creating Makefile config.status: creating libProgressBar/Makefile config.status: creating doc/Makefile config.status: creating doc/libProgressBar.3 config.status: creating libProgressBar/config.h config.status: executing depfiles commands config.status: executing libtool commands dh_auto_build -a make -j1 make[1]: Entering directory '/<>/libgkarrays-2.1.0+dfsg' Making all in src make[2]: Entering directory '/<>/libgkarrays-2.1.0+dfsg/src' Making all in kseq make[3]: Entering directory '/<>/libgkarrays-2.1.0+dfsg/src/kseq' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/<>/libgkarrays-2.1.0+dfsg/src/kseq' Making all in sux make[3]: Entering directory '/<>/libgkarrays-2.1.0+dfsg/src/sux' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/<>/libgkarrays-2.1.0+dfsg/src/sux' Making all in libProgressBar-1.2.0 make[3]: Entering directory '/<>/libgkarrays-2.1.0+dfsg/src/libProgressBar-1.2.0' Making all in libProgressBar make[4]: Entering directory '/<>/libgkarrays-2.1.0+dfsg/src/libProgressBar-1.2.0/libProgressBar' make all-am make[5]: Entering directory '/<>/libgkarrays-2.1.0+dfsg/src/libProgressBar-1.2.0/libProgressBar' aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -O6 -Wall --pedantic --ansi -c -o testPB.o testPB.cpp /bin/bash ../libtool --tag=CXX --mode=compile aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -O6 -Wall --pedantic --ansi -c -o progressBar.lo progressBar.cpp libtool: compile: aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -O6 -Wall --pedantic --ansi -c progressBar.cpp -fPIC -DPIC -o .libs/progressBar.o libtool: compile: aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -O6 -Wall --pedantic --ansi -c progressBar.cpp -o progressBar.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=link aarch64-linux-gnu-g++ -O6 -Wall --pedantic --ansi -version-info 1:2:1 -Wl,-z,relro -Wl,-z,now -o libProgressBar.la -rpath /usr/lib/aarch64-linux-gnu progressBar.lo libtool: link: aarch64-linux-gnu-g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc-cross/aarch64-linux-gnu/8/../../../../aarch64-linux-gnu/lib/../lib/crti.o /usr/lib/gcc-cross/aarch64-linux-gnu/8/crtbeginS.o .libs/progressBar.o -L/usr/lib/gcc-cross/aarch64-linux-gnu/8 -L/usr/lib/gcc-cross/aarch64-linux-gnu/8/../../../../aarch64-linux-gnu/lib/../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc-cross/aarch64-linux-gnu/8/../../../../aarch64-linux-gnu/lib -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc-cross/aarch64-linux-gnu/8/crtendS.o /usr/lib/gcc-cross/aarch64-linux-gnu/8/../../../../aarch64-linux-gnu/lib/../lib/crtn.o -O6 -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,libProgressBar.so.0 -o .libs/libProgressBar.so.0.1.2 libtool: link: (cd ".libs" && rm -f "libProgressBar.so.0" && ln -s "libProgressBar.so.0.1.2" "libProgressBar.so.0") libtool: link: (cd ".libs" && rm -f "libProgressBar.so" && ln -s "libProgressBar.so.0.1.2" "libProgressBar.so") libtool: link: aarch64-linux-gnu-ar cru .libs/libProgressBar.a progressBar.o aarch64-linux-gnu-ar: `u' modifier ignored since `D' is the default (see `U') libtool: link: aarch64-linux-gnu-ranlib .libs/libProgressBar.a libtool: link: ( cd ".libs" && rm -f "libProgressBar.la" && ln -s "../libProgressBar.la" "libProgressBar.la" ) /bin/bash ../libtool --tag=CXX --mode=link aarch64-linux-gnu-g++ -O6 -Wall --pedantic --ansi -lProgressBar -Wl,-z,relro -Wl,-z,now -o testProgressBar testPB.o libProgressBar.la libtool: link: aarch64-linux-gnu-g++ -O6 -Wall --pedantic --ansi -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testProgressBar testPB.o /<>/libgkarrays-2.1.0+dfsg/src/libProgressBar-1.2.0/libProgressBar/.libs/libProgressBar.so ./.libs/libProgressBar.so make[5]: Leaving directory '/<>/libgkarrays-2.1.0+dfsg/src/libProgressBar-1.2.0/libProgressBar' make[4]: Leaving directory '/<>/libgkarrays-2.1.0+dfsg/src/libProgressBar-1.2.0/libProgressBar' make[4]: Entering directory '/<>/libgkarrays-2.1.0+dfsg/src/libProgressBar-1.2.0' cp "libProgressBar.pc" "libProgressBar-1.2.0.pc" make[4]: Leaving directory '/<>/libgkarrays-2.1.0+dfsg/src/libProgressBar-1.2.0' make[3]: Leaving directory '/<>/libgkarrays-2.1.0+dfsg/src/libProgressBar-1.2.0' make[3]: Entering directory '/<>/libgkarrays-2.1.0+dfsg/src' aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../config -I/<>/libgkarrays-2.1.0+dfsg -I/<>/libgkarrays-2.1.0+dfsg/src/libProgressBar-1.2.0/ -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -fdebug-prefix-map=/<>/libgkarrays-2.1.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o buildTables.o buildTables.cpp In file included from ./readsReader.h:109, from ./gkArrays.h:115, from buildTables.cpp:111: ./kseq/kseq.h:169:14: warning: 'int kseq_read(kseq_t*)' defined but not used [-Wunused-function] static int kseq_read(kseq_t *seq) \ ^~~~~~~~~ ./kseq/kseq.h:227:3: note: in expansion of macro '__KSEQ_READ' __KSEQ_READ ^~~~~~~~~~~ ./readsReader.h:111:1: note: in expansion of macro 'KSEQ_INIT' KSEQ_INIT(gzFile, gzread) ^~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=compile aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../config -I/<>/libgkarrays-2.1.0+dfsg -I/<>/libgkarrays-2.1.0+dfsg/src/libProgressBar-1.2.0/ -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -fdebug-prefix-map=/<>/libgkarrays-2.1.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gkArrays.lo gkArrays.cpp libtool: compile: aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../config -I/<>/libgkarrays-2.1.0+dfsg -I/<>/libgkarrays-2.1.0+dfsg/src/libProgressBar-1.2.0/ -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -fdebug-prefix-map=/<>/libgkarrays-2.1.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c gkArrays.cpp -fPIC -DPIC -o .libs/gkArrays.o In file included from readsReader.h:109, from gkArrays.h:115, from gkArrays.cpp:113: kseq/kseq.h:169:14: warning: 'int kseq_read(kseq_t*)' defined but not used [-Wunused-function] static int kseq_read(kseq_t *seq) \ ^~~~~~~~~ kseq/kseq.h:227:3: note: in expansion of macro '__KSEQ_READ' __KSEQ_READ ^~~~~~~~~~~ readsReader.h:111:1: note: in expansion of macro 'KSEQ_INIT' KSEQ_INIT(gzFile, gzread) ^~~~~~~~~ libtool: compile: aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../config -I/<>/libgkarrays-2.1.0+dfsg -I/<>/libgkarrays-2.1.0+dfsg/src/libProgressBar-1.2.0/ -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -fdebug-prefix-map=/<>/libgkarrays-2.1.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c gkArrays.cpp -o gkArrays.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../config -I/<>/libgkarrays-2.1.0+dfsg -I/<>/libgkarrays-2.1.0+dfsg/src/libProgressBar-1.2.0/ -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -fdebug-prefix-map=/<>/libgkarrays-2.1.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o solArray.lo solArray.cpp libtool: compile: aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../config -I/<>/libgkarrays-2.1.0+dfsg -I/<>/libgkarrays-2.1.0+dfsg/src/libProgressBar-1.2.0/ -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -fdebug-prefix-map=/<>/libgkarrays-2.1.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c solArray.cpp -fPIC -DPIC -o .libs/solArray.o libtool: compile: aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../config -I/<>/libgkarrays-2.1.0+dfsg -I/<>/libgkarrays-2.1.0+dfsg/src/libProgressBar-1.2.0/ -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -fdebug-prefix-map=/<>/libgkarrays-2.1.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c solArray.cpp -o solArray.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../config -I/<>/libgkarrays-2.1.0+dfsg -I/<>/libgkarrays-2.1.0+dfsg/src/libProgressBar-1.2.0/ -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -fdebug-prefix-map=/<>/libgkarrays-2.1.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o utils.lo utils.cpp libtool: compile: aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../config -I/<>/libgkarrays-2.1.0+dfsg -I/<>/libgkarrays-2.1.0+dfsg/src/libProgressBar-1.2.0/ -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -fdebug-prefix-map=/<>/libgkarrays-2.1.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c utils.cpp -fPIC -DPIC -o .libs/utils.o libtool: compile: aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../config -I/<>/libgkarrays-2.1.0+dfsg -I/<>/libgkarrays-2.1.0+dfsg/src/libProgressBar-1.2.0/ -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -fdebug-prefix-map=/<>/libgkarrays-2.1.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c utils.cpp -o utils.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../config -I/<>/libgkarrays-2.1.0+dfsg -I/<>/libgkarrays-2.1.0+dfsg/src/libProgressBar-1.2.0/ -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -fdebug-prefix-map=/<>/libgkarrays-2.1.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gkArraysBuilder.lo gkArraysBuilder.cpp libtool: compile: aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../config -I/<>/libgkarrays-2.1.0+dfsg -I/<>/libgkarrays-2.1.0+dfsg/src/libProgressBar-1.2.0/ -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -fdebug-prefix-map=/<>/libgkarrays-2.1.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c gkArraysBuilder.cpp -fPIC -DPIC -o .libs/gkArraysBuilder.o In file included from readsReader.h:109, from gkArrays.h:115, from gkArraysBuilder.h:105, from gkArraysBuilder.cpp:103: kseq/kseq.h:169:14: warning: 'int kseq_read(kseq_t*)' defined but not used [-Wunused-function] static int kseq_read(kseq_t *seq) \ ^~~~~~~~~ kseq/kseq.h:227:3: note: in expansion of macro '__KSEQ_READ' __KSEQ_READ ^~~~~~~~~~~ readsReader.h:111:1: note: in expansion of macro 'KSEQ_INIT' KSEQ_INIT(gzFile, gzread) ^~~~~~~~~ libtool: compile: aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../config -I/<>/libgkarrays-2.1.0+dfsg -I/<>/libgkarrays-2.1.0+dfsg/src/libProgressBar-1.2.0/ -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -fdebug-prefix-map=/<>/libgkarrays-2.1.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c gkArraysBuilder.cpp -o gkArraysBuilder.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../config -I/<>/libgkarrays-2.1.0+dfsg -I/<>/libgkarrays-2.1.0+dfsg/src/libProgressBar-1.2.0/ -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -fdebug-prefix-map=/<>/libgkarrays-2.1.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gkSABuilder.lo gkSABuilder.cpp libtool: compile: aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../config -I/<>/libgkarrays-2.1.0+dfsg -I/<>/libgkarrays-2.1.0+dfsg/src/libProgressBar-1.2.0/ -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -fdebug-prefix-map=/<>/libgkarrays-2.1.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c gkSABuilder.cpp -fPIC -DPIC -o .libs/gkSABuilder.o gkSABuilder.cpp: In function 'int64_t gkarrays::partition(gkarrays::SolArray*, gkarrays::SolArray*, uintSA, uintSA, uintSA)': gkSABuilder.cpp:340:17: warning: suggest parentheses around '&&' within '||' [-Wparentheses] while(i <= end && values->get(i) < pivotv||((pivotv==values->get(i)) &&(pivotp>sa->get(i)))); ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ./readsReader.h:109, from ./gkArrays.h:115, from ./gkSABuilder.h:108, from gkSABuilder.cpp:104: ./readsReader.h: At global scope: ./kseq/kseq.h:169:14: warning: 'int kseq_read(kseq_t*)' defined but not used [-Wunused-function] static int kseq_read(kseq_t *seq) \ ^~~~~~~~~ ./kseq/kseq.h:227:3: note: in expansion of macro '__KSEQ_READ' __KSEQ_READ ^~~~~~~~~~~ ./readsReader.h:111:1: note: in expansion of macro 'KSEQ_INIT' KSEQ_INIT(gzFile, gzread) ^~~~~~~~~ libtool: compile: aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../config -I/<>/libgkarrays-2.1.0+dfsg -I/<>/libgkarrays-2.1.0+dfsg/src/libProgressBar-1.2.0/ -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -fdebug-prefix-map=/<>/libgkarrays-2.1.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c gkSABuilder.cpp -o gkSABuilder.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../config -I/<>/libgkarrays-2.1.0+dfsg -I/<>/libgkarrays-2.1.0+dfsg/src/libProgressBar-1.2.0/ -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -fdebug-prefix-map=/<>/libgkarrays-2.1.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gkCFPSBuilder.lo gkCFPSBuilder.cpp libtool: compile: aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../config -I/<>/libgkarrays-2.1.0+dfsg -I/<>/libgkarrays-2.1.0+dfsg/src/libProgressBar-1.2.0/ -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -fdebug-prefix-map=/<>/libgkarrays-2.1.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c gkCFPSBuilder.cpp -fPIC -DPIC -o .libs/gkCFPSBuilder.o In file included from readsReader.h:109, from gkArrays.h:115, from gkCFPSBuilder.cpp:110: kseq/kseq.h:169:14: warning: 'int kseq_read(kseq_t*)' defined but not used [-Wunused-function] static int kseq_read(kseq_t *seq) \ ^~~~~~~~~ kseq/kseq.h:227:3: note: in expansion of macro '__KSEQ_READ' __KSEQ_READ ^~~~~~~~~~~ readsReader.h:111:1: note: in expansion of macro 'KSEQ_INIT' KSEQ_INIT(gzFile, gzread) ^~~~~~~~~ libtool: compile: aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../config -I/<>/libgkarrays-2.1.0+dfsg -I/<>/libgkarrays-2.1.0+dfsg/src/libProgressBar-1.2.0/ -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -fdebug-prefix-map=/<>/libgkarrays-2.1.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c gkCFPSBuilder.cpp -o gkCFPSBuilder.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../config -I/<>/libgkarrays-2.1.0+dfsg -I/<>/libgkarrays-2.1.0+dfsg/src/libProgressBar-1.2.0/ -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -fdebug-prefix-map=/<>/libgkarrays-2.1.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gkIFABuilder.lo gkIFABuilder.cpp libtool: compile: aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../config -I/<>/libgkarrays-2.1.0+dfsg -I/<>/libgkarrays-2.1.0+dfsg/src/libProgressBar-1.2.0/ -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -fdebug-prefix-map=/<>/libgkarrays-2.1.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c gkIFABuilder.cpp -fPIC -DPIC -o .libs/gkIFABuilder.o In file included from ./readsReader.h:109, from ./gkArrays.h:115, from ./gkIFABuilder.h:107, from gkIFABuilder.cpp:105: ./kseq/kseq.h:169:14: warning: 'int kseq_read(kseq_t*)' defined but not used [-Wunused-function] static int kseq_read(kseq_t *seq) \ ^~~~~~~~~ ./kseq/kseq.h:227:3: note: in expansion of macro '__KSEQ_READ' __KSEQ_READ ^~~~~~~~~~~ ./readsReader.h:111:1: note: in expansion of macro 'KSEQ_INIT' KSEQ_INIT(gzFile, gzread) ^~~~~~~~~ libtool: compile: aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../config -I/<>/libgkarrays-2.1.0+dfsg -I/<>/libgkarrays-2.1.0+dfsg/src/libProgressBar-1.2.0/ -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -fdebug-prefix-map=/<>/libgkarrays-2.1.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c gkIFABuilder.cpp -o gkIFABuilder.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../config -I/<>/libgkarrays-2.1.0+dfsg -I/<>/libgkarrays-2.1.0+dfsg/src/libProgressBar-1.2.0/ -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -fdebug-prefix-map=/<>/libgkarrays-2.1.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o readsReader.lo readsReader.cpp libtool: compile: aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../config -I/<>/libgkarrays-2.1.0+dfsg -I/<>/libgkarrays-2.1.0+dfsg/src/libProgressBar-1.2.0/ -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -fdebug-prefix-map=/<>/libgkarrays-2.1.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c readsReader.cpp -fPIC -DPIC -o .libs/readsReader.o libtool: compile: aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../config -I/<>/libgkarrays-2.1.0+dfsg -I/<>/libgkarrays-2.1.0+dfsg/src/libProgressBar-1.2.0/ -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -fdebug-prefix-map=/<>/libgkarrays-2.1.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c readsReader.cpp -o readsReader.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../config -I/<>/libgkarrays-2.1.0+dfsg -I/<>/libgkarrays-2.1.0+dfsg/src/libProgressBar-1.2.0/ -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -fdebug-prefix-map=/<>/libgkarrays-2.1.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o largebinvect.lo largebinvect.cxx libtool: compile: aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../config -I/<>/libgkarrays-2.1.0+dfsg -I/<>/libgkarrays-2.1.0+dfsg/src/libProgressBar-1.2.0/ -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -fdebug-prefix-map=/<>/libgkarrays-2.1.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c largebinvect.cxx -fPIC -DPIC -o .libs/largebinvect.o libtool: compile: aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../config -I/<>/libgkarrays-2.1.0+dfsg -I/<>/libgkarrays-2.1.0+dfsg/src/libProgressBar-1.2.0/ -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -fdebug-prefix-map=/<>/libgkarrays-2.1.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c largebinvect.cxx -o largebinvect.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../config -I/<>/libgkarrays-2.1.0+dfsg -I/<>/libgkarrays-2.1.0+dfsg/src/libProgressBar-1.2.0/ -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -fdebug-prefix-map=/<>/libgkarrays-2.1.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o bitvector.lo bitvector.cxx libtool: compile: aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../config -I/<>/libgkarrays-2.1.0+dfsg -I/<>/libgkarrays-2.1.0+dfsg/src/libProgressBar-1.2.0/ -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -fdebug-prefix-map=/<>/libgkarrays-2.1.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c bitvector.cxx -fPIC -DPIC -o .libs/bitvector.o libtool: compile: aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../config -I/<>/libgkarrays-2.1.0+dfsg -I/<>/libgkarrays-2.1.0+dfsg/src/libProgressBar-1.2.0/ -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -fdebug-prefix-map=/<>/libgkarrays-2.1.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c bitvector.cxx -o bitvector.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../config -I/<>/libgkarrays-2.1.0+dfsg -I/<>/libgkarrays-2.1.0+dfsg/src/libProgressBar-1.2.0/ -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -fdebug-prefix-map=/<>/libgkarrays-2.1.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o rank9b.lo `test -f 'sux/rank9b.cpp' || echo './'`sux/rank9b.cpp libtool: compile: aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../config -I/<>/libgkarrays-2.1.0+dfsg -I/<>/libgkarrays-2.1.0+dfsg/src/libProgressBar-1.2.0/ -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -fdebug-prefix-map=/<>/libgkarrays-2.1.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c sux/rank9b.cpp -fPIC -DPIC -o .libs/rank9b.o sux/rank9b.cpp: In member function 'uint64_t rank9b::rank(uint64_t)': sux/rank9b.cpp:144:93: warning: suggest parentheses around '-' inside '>>' [-Wparentheses] return counts[ block ] + ( counts[ block + 1 ] >> ( offset + ( offset >> sizeof offset * 8 - 4 & 0x8 ) ) * 9 & 0x1FF ) + count( bits[ word ] & ( ( 1ULL << k % 64 ) - 1 ) ); ~~~~~~~~~~~~~~~~~~^~~ sux/rank9b.cpp: In member function 'uint64_t rank9b::select(uint64_t)': sux/rank9b.cpp:207:81: warning: suggest parentheses around '-' in operand of '&' [-Wparentheses] const uint64_t rank_in_word = rank_in_block - ( subcounts >> ( offset_in_block - 1 & 7 ) * 9 & 0x1FF ); ~~~~~~~~~~~~~~~~^~~ libtool: compile: aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../config -I/<>/libgkarrays-2.1.0+dfsg -I/<>/libgkarrays-2.1.0+dfsg/src/libProgressBar-1.2.0/ 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-Wl,-z,relro -Wl,-z,now -o buildTables buildTables.o libGkArrays.la -lpthread -lz libtool: link: aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>/libgkarrays-2.1.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/buildTables buildTables.o /<>/libgkarrays-2.1.0+dfsg/src/.libs/libGkArrays.so -L/<>/libgkarrays-2.1.0+dfsg/src/libProgressBar-1.2.0/libProgressBar/.libs /<>/libgkarrays-2.1.0+dfsg/src/libProgressBar-1.2.0/libProgressBar/.libs/libProgressBar.so ./.libs/libGkArrays.so -lpthread -lz make[3]: Leaving directory '/<>/libgkarrays-2.1.0+dfsg/src' make[2]: Leaving directory '/<>/libgkarrays-2.1.0+dfsg/src' Making all in tests make[2]: Entering directory '/<>/libgkarrays-2.1.0+dfsg/tests' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/<>/libgkarrays-2.1.0+dfsg/tests' make[2]: Entering directory '/<>/libgkarrays-2.1.0+dfsg' cp "libGkArrays.pc" "libGkArrays-2.1.0.pc" make[2]: Leaving directory '/<>/libgkarrays-2.1.0+dfsg' make[1]: Leaving directory '/<>/libgkarrays-2.1.0+dfsg' dh_auto_test -a create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh binary-arch dh_testroot -a dh_prep -a dh_auto_install -a make -j1 install DESTDIR=/<>/libgkarrays-2.1.0\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/<>/libgkarrays-2.1.0+dfsg' Making install in src make[2]: Entering directory '/<>/libgkarrays-2.1.0+dfsg/src' Making install in kseq make[3]: Entering directory '/<>/libgkarrays-2.1.0+dfsg/src/kseq' make[4]: Entering directory '/<>/libgkarrays-2.1.0+dfsg/src/kseq' make[4]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/<>/libgkarrays-2.1.0+dfsg/debian/tmp/usr/include/libGkArrays-2.1.0/kseq' /usr/bin/install -c -m 644 kseq.h '/<>/libgkarrays-2.1.0+dfsg/debian/tmp/usr/include/libGkArrays-2.1.0/kseq' make[4]: Leaving directory '/<>/libgkarrays-2.1.0+dfsg/src/kseq' make[3]: Leaving directory '/<>/libgkarrays-2.1.0+dfsg/src/kseq' Making install in sux make[3]: Entering directory '/<>/libgkarrays-2.1.0+dfsg/src/sux' make[4]: Entering directory '/<>/libgkarrays-2.1.0+dfsg/src/sux' make[4]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/<>/libgkarrays-2.1.0+dfsg/debian/tmp/usr/include/libGkArrays-2.1.0/sux' /usr/bin/install -c -m 644 macros.h popcount.h rank9b.h '/<>/libgkarrays-2.1.0+dfsg/debian/tmp/usr/include/libGkArrays-2.1.0/sux' make[4]: Leaving directory '/<>/libgkarrays-2.1.0+dfsg/src/sux' make[3]: Leaving directory '/<>/libgkarrays-2.1.0+dfsg/src/sux' Making install in libProgressBar-1.2.0 make[3]: Entering directory '/<>/libgkarrays-2.1.0+dfsg/src/libProgressBar-1.2.0' Making install in libProgressBar make[4]: Entering directory '/<>/libgkarrays-2.1.0+dfsg/src/libProgressBar-1.2.0/libProgressBar' make[5]: Entering directory '/<>/libgkarrays-2.1.0+dfsg/src/libProgressBar-1.2.0/libProgressBar' /bin/mkdir -p '/<>/libgkarrays-2.1.0+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' /bin/bash ../libtool --mode=install /usr/bin/install -c libProgressBar.la '/<>/libgkarrays-2.1.0+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: install: /usr/bin/install -c .libs/libProgressBar.so.0.1.2 /<>/libgkarrays-2.1.0+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libProgressBar.so.0.1.2 libtool: install: (cd /<>/libgkarrays-2.1.0+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libProgressBar.so.0.1.2 libProgressBar.so.0 || { rm -f libProgressBar.so.0 && ln -s libProgressBar.so.0.1.2 libProgressBar.so.0; }; }) libtool: install: (cd /<>/libgkarrays-2.1.0+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libProgressBar.so.0.1.2 libProgressBar.so || { rm -f libProgressBar.so && ln -s libProgressBar.so.0.1.2 libProgressBar.so; }; }) libtool: install: /usr/bin/install -c .libs/libProgressBar.lai /<>/libgkarrays-2.1.0+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libProgressBar.la libtool: install: /usr/bin/install -c .libs/libProgressBar.a /<>/libgkarrays-2.1.0+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libProgressBar.a libtool: install: chmod 644 /<>/libgkarrays-2.1.0+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libProgressBar.a libtool: install: aarch64-linux-gnu-ranlib /<>/libgkarrays-2.1.0+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libProgressBar.a libtool: warning: remember to run 'libtool --finish /usr/lib/aarch64-linux-gnu' /bin/mkdir -p '/<>/libgkarrays-2.1.0+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libProgressBar-1.2.0/include' /usr/bin/install -c -m 644 config.h '/<>/libgkarrays-2.1.0+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libProgressBar-1.2.0/include' /bin/mkdir -p '/<>/libgkarrays-2.1.0+dfsg/debian/tmp/usr/include/libProgressBar-1.2.0' /usr/bin/install -c -m 644 progressBar.h '/<>/libgkarrays-2.1.0+dfsg/debian/tmp/usr/include/libProgressBar-1.2.0' make install-data-hook make[6]: Entering directory '/<>/libgkarrays-2.1.0+dfsg/src/libProgressBar-1.2.0/libProgressBar' ln -s -f libProgressBar-1.2.0 /<>/libgkarrays-2.1.0+dfsg/debian/tmp/usr/include/libProgressBar make[6]: Leaving directory '/<>/libgkarrays-2.1.0+dfsg/src/libProgressBar-1.2.0/libProgressBar' make[5]: Leaving directory '/<>/libgkarrays-2.1.0+dfsg/src/libProgressBar-1.2.0/libProgressBar' make[4]: Leaving directory '/<>/libgkarrays-2.1.0+dfsg/src/libProgressBar-1.2.0/libProgressBar' make[4]: Entering directory '/<>/libgkarrays-2.1.0+dfsg/src/libProgressBar-1.2.0' make[5]: Entering directory '/<>/libgkarrays-2.1.0+dfsg/src/libProgressBar-1.2.0' make[5]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/<>/libgkarrays-2.1.0+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/pkgconfig' /usr/bin/install -c -m 644 libProgressBar-1.2.0.pc '/<>/libgkarrays-2.1.0+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/pkgconfig' make install-data-hook make[6]: Entering directory '/<>/libgkarrays-2.1.0+dfsg/src/libProgressBar-1.2.0' ln -s -f libProgressBar-1.2.0.pc /<>/libgkarrays-2.1.0+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/pkgconfig/libProgressBar.pc make[6]: Leaving directory '/<>/libgkarrays-2.1.0+dfsg/src/libProgressBar-1.2.0' make[5]: Leaving directory '/<>/libgkarrays-2.1.0+dfsg/src/libProgressBar-1.2.0' make[4]: Leaving directory '/<>/libgkarrays-2.1.0+dfsg/src/libProgressBar-1.2.0' make[3]: Leaving directory '/<>/libgkarrays-2.1.0+dfsg/src/libProgressBar-1.2.0' make[3]: Entering directory '/<>/libgkarrays-2.1.0+dfsg/src' make[4]: Entering directory '/<>/libgkarrays-2.1.0+dfsg/src' /bin/mkdir -p '/<>/libgkarrays-2.1.0+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' /bin/bash ../libtool --mode=install /usr/bin/install -c libGkArrays.la '/<>/libgkarrays-2.1.0+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: warning: relinking 'libGkArrays.la' libtool: install: (cd /<>/libgkarrays-2.1.0+dfsg/src; /bin/bash "/<>/libgkarrays-2.1.0+dfsg/libtool" --tag CXX --mode=relink aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>/libgkarrays-2.1.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -version-info 2:0:1 -lpthread -L/<>/libgkarrays-2.1.0+dfsg/src/libProgressBar-1.2.0/libProgressBar/.libs -lProgressBar -Wl,-z,relro -Wl,-z,now -o libGkArrays.la -rpath /usr/lib/aarch64-linux-gnu gkArrays.lo solArray.lo utils.lo gkArraysBuilder.lo gkSABuilder.lo gkCFPSBuilder.lo gkIFABuilder.lo readsReader.lo largebinvect.lo bitvector.lo rank9b.lo -lpthread -lz -inst-prefix-dir /<>/libgkarrays-2.1.0+dfsg/debian/tmp) libtool: relink: aarch64-linux-gnu-g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc-cross/aarch64-linux-gnu/8/../../../../aarch64-linux-gnu/lib/../lib/crti.o /usr/lib/gcc-cross/aarch64-linux-gnu/8/crtbeginS.o .libs/gkArrays.o .libs/solArray.o .libs/utils.o .libs/gkArraysBuilder.o .libs/gkSABuilder.o .libs/gkCFPSBuilder.o .libs/gkIFABuilder.o .libs/readsReader.o .libs/largebinvect.o .libs/bitvector.o .libs/rank9b.o -L/<>/libgkarrays-2.1.0+dfsg/src/libProgressBar-1.2.0/libProgressBar/.libs -L/<>/libgkarrays-2.1.0+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lProgressBar -lpthread -lz -L/usr/lib/gcc-cross/aarch64-linux-gnu/8 -L/usr/lib/gcc-cross/aarch64-linux-gnu/8/../../../../aarch64-linux-gnu/lib/../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc-cross/aarch64-linux-gnu/8/../../../../aarch64-linux-gnu/lib -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc-cross/aarch64-linux-gnu/8/crtendS.o /usr/lib/gcc-cross/aarch64-linux-gnu/8/../../../../aarch64-linux-gnu/lib/../lib/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,libGkArrays.so.1 -o .libs/libGkArrays.so.1.1.0 libtool: install: /usr/bin/install -c .libs/libGkArrays.so.1.1.0T /<>/libgkarrays-2.1.0+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libGkArrays.so.1.1.0 libtool: install: (cd /<>/libgkarrays-2.1.0+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libGkArrays.so.1.1.0 libGkArrays.so.1 || { rm -f libGkArrays.so.1 && ln -s libGkArrays.so.1.1.0 libGkArrays.so.1; }; }) libtool: install: (cd /<>/libgkarrays-2.1.0+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libGkArrays.so.1.1.0 libGkArrays.so || { rm -f libGkArrays.so && ln -s libGkArrays.so.1.1.0 libGkArrays.so; }; }) libtool: install: /usr/bin/install -c .libs/libGkArrays.lai /<>/libgkarrays-2.1.0+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libGkArrays.la libtool: install: /usr/bin/install -c .libs/libGkArrays.a /<>/libgkarrays-2.1.0+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libGkArrays.a libtool: install: chmod 644 /<>/libgkarrays-2.1.0+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libGkArrays.a libtool: install: aarch64-linux-gnu-ranlib /<>/libgkarrays-2.1.0+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libGkArrays.a libtool: warning: remember to run 'libtool --finish /usr/lib/aarch64-linux-gnu' /bin/mkdir -p '/<>/libgkarrays-2.1.0+dfsg/debian/tmp/usr/include/libGkArrays-2.1.0' /usr/bin/install -c -m 644 gkArrays.h solArray.h gkArraysTypes.h gkArraysBuilder.h gkSABuilder.h gkCFPSBuilder.h gkIFABuilder.h readsReader.h bitvector.hxx largebinvect.hxx bitvector.cxx largebinvect.cxx binvect.hxx '/<>/libgkarrays-2.1.0+dfsg/debian/tmp/usr/include/libGkArrays-2.1.0' /bin/mkdir -p '/<>/libgkarrays-2.1.0+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libGkArrays-2.1.0/include' /usr/bin/install -c -m 644 /<>/libgkarrays-2.1.0+dfsg/config/config.h '/<>/libgkarrays-2.1.0+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libGkArrays-2.1.0/include' make install-data-hook make[5]: Entering directory '/<>/libgkarrays-2.1.0+dfsg/src' ln -s -f libGkArrays-2.1.0 /<>/libgkarrays-2.1.0+dfsg/debian/tmp/usr/include/libGkArrays make[5]: Leaving directory '/<>/libgkarrays-2.1.0+dfsg/src' make[4]: Leaving directory '/<>/libgkarrays-2.1.0+dfsg/src' make[3]: Leaving directory '/<>/libgkarrays-2.1.0+dfsg/src' make[2]: Leaving directory '/<>/libgkarrays-2.1.0+dfsg/src' Making install in tests make[2]: Entering directory '/<>/libgkarrays-2.1.0+dfsg/tests' make[3]: Entering directory '/<>/libgkarrays-2.1.0+dfsg/tests' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/<>/libgkarrays-2.1.0+dfsg/tests' make[2]: Leaving directory '/<>/libgkarrays-2.1.0+dfsg/tests' make[2]: Entering directory '/<>/libgkarrays-2.1.0+dfsg' make[3]: Entering directory '/<>/libgkarrays-2.1.0+dfsg' make[3]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/<>/libgkarrays-2.1.0+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/pkgconfig' /usr/bin/install -c -m 644 libGkArrays-2.1.0.pc '/<>/libgkarrays-2.1.0+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/pkgconfig' make install-data-hook make[4]: Entering directory '/<>/libgkarrays-2.1.0+dfsg' ln -s -f libGkArrays-2.1.0.pc /<>/libgkarrays-2.1.0+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/pkgconfig/libGkArrays.pc make[4]: Leaving directory '/<>/libgkarrays-2.1.0+dfsg' make[3]: Leaving directory '/<>/libgkarrays-2.1.0+dfsg' make[2]: Leaving directory '/<>/libgkarrays-2.1.0+dfsg' make[1]: Leaving directory '/<>/libgkarrays-2.1.0+dfsg' debian/rules override_dh_install make[1]: Entering directory '/<>/libgkarrays-2.1.0+dfsg' dh_install d-shlibmove --commit \ --multiarch \ --devunversioned \ --exclude-la \ --override s/libProgressBar0-dev// \ --movedev debian/tmp/usr/include usr \ --movedev debian/tmp/usr/lib/aarch64-linux-gnu/pkgconfig usr/lib/aarch64-linux-gnu \ debian/tmp/usr/lib/aarch64-linux-gnu/libGkArrays.so Library package automatic movement utility --> zlib1g-dev package exists. set -e install -d -m 755 debian/libgkarrays-dev/usr/lib/aarch64-linux-gnu install -d -m 755 debian/libgkarrays1/usr/lib/aarch64-linux-gnu mv debian/tmp/usr/lib/aarch64-linux-gnu/libGkArrays.a debian/libgkarrays-dev/usr/lib/aarch64-linux-gnu mv debian/tmp/usr/lib/aarch64-linux-gnu/libGkArrays.so debian/libgkarrays-dev/usr/lib/aarch64-linux-gnu mv /<>/libgkarrays-2.1.0+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libGkArrays.so.1 debian/libgkarrays1/usr/lib/aarch64-linux-gnu mv /<>/libgkarrays-2.1.0+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libGkArrays.so.1.1.0 debian/libgkarrays1/usr/lib/aarch64-linux-gnu PKGDEV=libgkarrays-dev PKGSHL=libgkarrays1 install -d -m 755 debian/libgkarrays-dev/usr mv debian/tmp/usr/include debian/libgkarrays-dev/usr install -d -m 755 debian/libgkarrays-dev/usr/lib/aarch64-linux-gnu mv debian/tmp/usr/lib/aarch64-linux-gnu/pkgconfig debian/libgkarrays-dev/usr/lib/aarch64-linux-gnu # now move libProgressBar manually mv debian/tmp/usr/lib/aarch64-linux-gnu/libProgressBar.so.0* debian/libgkarrays1/usr/lib/aarch64-linux-gnu chmod -x debian/libgkarrays1/usr/lib/aarch64-linux-gnu/libProgressBar.so.0.* mv debian/tmp/usr/lib/aarch64-linux-gnu/libProgressBar.so debian/libgkarrays-dev/usr/lib/aarch64-linux-gnu mv debian/tmp/usr/lib/aarch64-linux-gnu/libProgressBar.a debian/libgkarrays-dev/usr/lib/aarch64-linux-gnu make[1]: Leaving directory '/<>/libgkarrays-2.1.0+dfsg' dh_installdocs -a dh_installchangelogs -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dpkg-gencontrol: warning: Depends field of package libgkarrays-dev: substitution variable ${shlibs:Depends} used, but is not defined dpkg-gencontrol: warning: package libgkarrays-dev: substitution variable ${devlibs:Depends} unused, but is defined dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'libgkarrays1' in '../libgkarrays1_2.1.0+dfsg-2_arm64.deb'. dpkg-deb: building package 'libgkarrays1-dbgsym' in '../libgkarrays1-dbgsym_2.1.0+dfsg-2_arm64.deb'. dpkg-deb: building package 'libgkarrays-dev' in '../libgkarrays-dev_2.1.0+dfsg-2_arm64.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any >../libgkarrays_2.1.0+dfsg-2_arm64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2019-03-08T08:06:17Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:amd64 Filtered Build-Depends: lintian:amd64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/resolver-Z0VeHy/apt_archive/sbuild-build-depends-lintian-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-essential-dummy sbuild-build-depends-libgkarrays-dummy sbuild-build-depends-lintian-dummy dpkg-scanpackages: info: Wrote 4 entries to output Packages file. Ign:1 copy:/<>/resolver-Z0VeHy/apt_archive ./ InRelease Get:2 copy:/<>/resolver-Z0VeHy/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-Z0VeHy/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-Z0VeHy/apt_archive ./ Sources [771 B] Get:5 copy:/<>/resolver-Z0VeHy/apt_archive ./ Packages [846 B] Fetched 2580 B in 0s (157 kB/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: diffstat gpg gpgconf libapt-pkg-perl libassuan0 libcapture-tiny-perl libcgi-pm-perl libclass-accessor-perl libclone-perl libdigest-hmac-perl libemail-valid-perl libexporter-tiny-perl libfile-basedir-perl libfuture-perl libhtml-parser-perl libhtml-tagset-perl libio-async-perl libio-pty-perl libio-socket-ssl-perl libipc-run-perl libipc-system-simple-perl liblist-moreutils-perl libmailtools-perl libnet-dns-perl libnet-domain-tld-perl libnet-ip-perl libnet-smtp-ssl-perl libnet-ssleay-perl libparse-debianchangelog-perl libpath-tiny-perl libreadline7 libsqlite3-0 libssl1.1 libstruct-dumb-perl libsub-name-perl libtext-levenshtein-perl libtimedate-perl libtry-tiny-perl liburi-perl libyaml-0-2 libyaml-libyaml-perl lintian netbase patchutils perl-openssl-defaults readline-common t1utils Suggested packages: libdata-dump-perl ca-certificates libhtml-template-perl libwww-perl binutils-multiarch libtext-template-perl readline-doc Recommended packages: gnupg libcgi-fast-perl libhttp-message-perl libasync-mergepoint-perl libsereal-perl libtest-fatal-perl libtest-refcount-perl libdigest-bubblebabble-perl libnet-dns-sec-perl libnet-libidn-perl libauthen-sasl-perl libunicode-utf8-perl libperlio-gzip-perl The following NEW packages will be installed: diffstat gpg gpgconf libapt-pkg-perl libassuan0 libcapture-tiny-perl libcgi-pm-perl libclass-accessor-perl libclone-perl libdigest-hmac-perl libemail-valid-perl libexporter-tiny-perl libfile-basedir-perl libfuture-perl libhtml-parser-perl libhtml-tagset-perl libio-async-perl libio-pty-perl libio-socket-ssl-perl libipc-run-perl libipc-system-simple-perl liblist-moreutils-perl libmailtools-perl libnet-dns-perl libnet-domain-tld-perl libnet-ip-perl libnet-smtp-ssl-perl libnet-ssleay-perl libparse-debianchangelog-perl libpath-tiny-perl libreadline7 libsqlite3-0 libssl1.1 libstruct-dumb-perl libsub-name-perl libtext-levenshtein-perl libtimedate-perl libtry-tiny-perl liburi-perl libyaml-0-2 libyaml-libyaml-perl lintian netbase patchutils perl-openssl-defaults readline-common sbuild-build-depends-lintian-dummy:arm64 t1utils 0 upgraded, 48 newly installed, 0 to remove and 0 not upgraded. Need to get 7781 kB of archives. After this operation, 20.7 MB of additional disk space will be used. Get:1 copy:/<>/resolver-Z0VeHy/apt_archive ./ sbuild-build-depends-lintian-dummy 0.invalid.0 [848 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 netbase all 5.6 [19.4 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 readline-common all 7.0-5 [70.6 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 diffstat amd64 1.62-1 [33.4 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 libassuan0 amd64 2.5.2-1 [49.4 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 libreadline7 amd64 7.0-5 [151 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 gpgconf amd64 2.2.13-1 [512 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 libsqlite3-0 amd64 3.27.2-1 [640 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 gpg amd64 2.2.13-1 [867 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 libapt-pkg-perl amd64 0.1.34+b1 [71.2 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 libcapture-tiny-perl all 0.48-1 [26.0 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 libhtml-tagset-perl all 3.20-3 [12.7 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 liburi-perl all 1.76-1 [89.9 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 libhtml-parser-perl amd64 3.72-3+b3 [105 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libcgi-pm-perl all 4.40-1 [222 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-name-perl amd64 0.21-1+b3 [13.6 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 libclass-accessor-perl all 0.51-1 [23.2 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libclone-perl amd64 0.41-1+b1 [14.6 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 libdigest-hmac-perl all 1.03+dfsg-2 [10.6 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 libtimedate-perl all 2.3000-2 [42.2 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 libssl1.1 amd64 1.1.1b-1 [1531 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 perl-openssl-defaults amd64 3 [6782 B] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-ssleay-perl amd64 1.85-2+b1 [308 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 libio-socket-ssl-perl all 2.060-3 [207 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-smtp-ssl-perl all 1.04-1 [6184 B] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 libmailtools-perl all 2.18-1 [88.5 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-ip-perl all 1.26-2 [29.0 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-dns-perl all 1.19-1 [372 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-domain-tld-perl all 1.75-1 [33.3 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 libemail-valid-perl all 1.202-1 [23.0 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 libexporter-tiny-perl all 1.002001-1 [36.9 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 libipc-system-simple-perl all 1.25-4 [26.5 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-basedir-perl all 0.08-1 [17.7 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 libfuture-perl all 0.39-1 [74.5 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 libstruct-dumb-perl all 0.09-1 [11.1 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 libio-async-perl all 0.72-1 [262 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 libio-pty-perl amd64 1:1.08-1.1+b5 [33.7 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 libipc-run-perl all 20180523.0-1 [101 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 liblist-moreutils-perl amd64 0.416-1+b4 [64.2 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libparse-debianchangelog-perl all 1.2.0-13 [59.5 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libpath-tiny-perl all 0.108-1 [53.3 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-levenshtein-perl all 0.13-1 [11.1 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 libtry-tiny-perl all 0.30-1 [23.3 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-0-2 amd64 0.2.1-1 [47.2 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-libyaml-perl amd64 0.76+repack-1 [33.1 kB] Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 patchutils amd64 0.3.4-2 [90.4 kB] Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 t1utils amd64 1.41-3 [62.3 kB] Get:48 http://debian.oregonstate.edu/debian unstable/main amd64 lintian all 2.9.1 [1193 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 7781 kB in 0s (38.4 MB/s) Selecting previously unselected package netbase. 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I: Lintian run was successful. +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ libgkarrays_2.1.0+dfsg-2_arm64.changes: --------------------------------------- Format: 1.8 Date: Tue, 17 Jul 2018 21:09:29 +0200 Source: libgkarrays Binary: libgkarrays-dev libgkarrays1 libgkarrays1-dbgsym Built-For-Profiles: cross nocheck Architecture: arm64 Version: 2.1.0+dfsg-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: libgkarrays-dev - library to query large collection of NGS sequences (development) libgkarrays1 - library to query large collection of NGS sequences Changes: libgkarrays (2.1.0+dfsg-2) unstable; urgency=medium . * debhelper 11 * Point Vcs fields to salsa.debian.org * Standards-Version: 4.1.5 Checksums-Sha1: a2bc3027883bd2981bf11e7ab1be01e5c3614dd0 80488 libgkarrays-dev_2.1.0+dfsg-2_arm64.deb 45a538663ac94439903a818f3c0dd3814ec35cfa 250560 libgkarrays1-dbgsym_2.1.0+dfsg-2_arm64.deb 8398bed38ee6a977c23e3c41ff46de6b6bf4cbf0 51748 libgkarrays1_2.1.0+dfsg-2_arm64.deb 1b58aa86ca0fdbb6db5314528a2cc109e0c7dad6 5248 libgkarrays_2.1.0+dfsg-2_arm64.buildinfo Checksums-Sha256: ac794a2aed90341e8fb5745f43e8cf8329d5aea7dfef07179097f56275ead808 80488 libgkarrays-dev_2.1.0+dfsg-2_arm64.deb 574d491a6245d505dbd60e2b3050c58bd6c27a03860f5d71254d4a5c02f58d22 250560 libgkarrays1-dbgsym_2.1.0+dfsg-2_arm64.deb 3a587017903c8913b0d5927a5a7a0351649d13e797215fc440e6cae59bfc2499 51748 libgkarrays1_2.1.0+dfsg-2_arm64.deb e9dc7541063f6d1e277cd3727ddeace7a64fd60f9dc5f3f679b43803711894ff 5248 libgkarrays_2.1.0+dfsg-2_arm64.buildinfo Files: 363a3993b24fb2301c82522050bf07bd 80488 libdevel optional libgkarrays-dev_2.1.0+dfsg-2_arm64.deb 997b76a7f4f0a1eff2c1e453bc435586 250560 debug optional libgkarrays1-dbgsym_2.1.0+dfsg-2_arm64.deb 625508d1526ba8afc3a0f848323f2f51 51748 libs optional libgkarrays1_2.1.0+dfsg-2_arm64.deb 62b8be5a6ac988eaf4f0a0370e893c02 5248 science optional libgkarrays_2.1.0+dfsg-2_arm64.buildinfo +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: libgkarrays Binary: libgkarrays1 libgkarrays-dev Architecture: arm64 Version: 2.1.0+dfsg-2 Checksums-Md5: 363a3993b24fb2301c82522050bf07bd 80488 libgkarrays-dev_2.1.0+dfsg-2_arm64.deb 997b76a7f4f0a1eff2c1e453bc435586 250560 libgkarrays1-dbgsym_2.1.0+dfsg-2_arm64.deb 625508d1526ba8afc3a0f848323f2f51 51748 libgkarrays1_2.1.0+dfsg-2_arm64.deb Checksums-Sha1: a2bc3027883bd2981bf11e7ab1be01e5c3614dd0 80488 libgkarrays-dev_2.1.0+dfsg-2_arm64.deb 45a538663ac94439903a818f3c0dd3814ec35cfa 250560 libgkarrays1-dbgsym_2.1.0+dfsg-2_arm64.deb 8398bed38ee6a977c23e3c41ff46de6b6bf4cbf0 51748 libgkarrays1_2.1.0+dfsg-2_arm64.deb Checksums-Sha256: ac794a2aed90341e8fb5745f43e8cf8329d5aea7dfef07179097f56275ead808 80488 libgkarrays-dev_2.1.0+dfsg-2_arm64.deb 574d491a6245d505dbd60e2b3050c58bd6c27a03860f5d71254d4a5c02f58d22 250560 libgkarrays1-dbgsym_2.1.0+dfsg-2_arm64.deb 3a587017903c8913b0d5927a5a7a0351649d13e797215fc440e6cae59bfc2499 51748 libgkarrays1_2.1.0+dfsg-2_arm64.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Fri, 08 Mar 2019 08:06:16 +0000 Build-Path: /<>/libgkarrays-2.1.0+dfsg Installed-Build-Depends: adduser (= 3.118), apt (= 1.8.0~rc4), autoconf (= 2.69-11), automake (= 1:1.16.1-4), autopoint (= 0.19.8.1-9), autotools-dev (= 20180224.1), base-files (= 10.1), base-passwd (= 3.5.46), bash (= 5.0-2), binutils (= 2.31.1-15), binutils-common (= 2.31.1-15), binutils-x86-64-linux-gnu (= 2.31.1-15), bsdmainutils (= 11.1.2+b1), bsdutils (= 1:2.33.1-0.1), build-essential (= 12.6), bzip2 (= 1.0.6-9), coreutils (= 8.30-3), cpp (= 4:8.3.0-1), cpp-8 (= 8.3.0-2), d-shlibs (= 0.84), dash (= 0.5.10.2-5), debconf (= 1.5.71), debhelper (= 12.1.1), debian-archive-keyring (= 2018.1), debianutils (= 4.8.6.1), dh-autoreconf (= 19), dh-strip-nondeterminism (= 1.1.1-1), diffutils (= 1:3.7-2), dpkg (= 1.19.5), dpkg-dev (= 1.19.5), dwz (= 0.12-3), fdisk (= 2.33.1-0.1), file (= 1:5.35-4), findutils (= 4.6.0+git+20190209-2), g++ (= 4:8.3.0-1), g++-8 (= 8.3.0-2), gcc (= 4:8.3.0-1), gcc-8 (= 8.3.0-2), gcc-8-base (= 8.3.0-2), gettext (= 0.19.8.1-9), gettext-base (= 0.19.8.1-9), gpgv (= 2.2.13-1), grep (= 3.3-1), groff-base (= 1.22.4-3), gzip (= 1.9-3), hostname (= 3.21), init-system-helpers (= 1.56+nmu1), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.2.53-4), libapt-pkg5.0 (= 1.8.0~rc4), libarchive-zip-perl (= 1.64-1), libasan5 (= 8.3.0-2), libatomic1 (= 8.3.0-2), libattr1 (= 1:2.4.48-4), libaudit-common (= 1:2.8.4-2), libaudit1 (= 1:2.8.4-2), libbinutils (= 2.31.1-15), libblkid1 (= 2.33.1-0.1), libbsd0 (= 0.9.1-2), libbz2-1.0 (= 1.0.6-9), libc-bin (= 2.28-8), libc-dev-bin (= 2.28-8), libc6 (= 2.28-8), libc6-dev (= 2.28-8), libcap-ng0 (= 0.7.9-2), libcc1-0 (= 8.3.0-2), libcroco3 (= 0.6.12-3), libdb5.3 (= 5.3.28+dfsg1-0.5), libdebconfclient0 (= 0.248), libdpkg-perl (= 1.19.5), libelf1 (= 0.176-1), libfdisk1 (= 2.33.1-0.1), libffi6 (= 3.2.1-9), libfile-stripnondeterminism-perl (= 1.1.1-1), libgcc-8-dev (= 8.3.0-2), libgcc1 (= 1:8.3.0-2), libgcrypt20 (= 1.8.4-5), libgdbm-compat4 (= 1.18.1-3), libgdbm6 (= 1.18.1-3), libglib2.0-0 (= 2.58.3-1), libgmp10 (= 2:6.1.2+dfsg-4), libgnutls30 (= 3.6.6-2), libgomp1 (= 8.3.0-2), libgpg-error0 (= 1.35-1), libhogweed4 (= 3.4.1-1), libicu63 (= 63.1-6), libidn2-0 (= 2.0.5-1), libisl19 (= 0.20-2), libitm1 (= 8.3.0-2), liblsan0 (= 8.3.0-2), liblz4-1 (= 1.8.3-1), liblzma5 (= 5.2.4-1), libmagic-mgc (= 1:5.35-4), libmagic1 (= 1:5.35-4), libmount1 (= 2.33.1-0.1), libmpc3 (= 1.1.0-1), libmpfr6 (= 4.0.2-1), libmpx2 (= 8.3.0-2), libncurses6 (= 6.1+20181013-2), libncursesw6 (= 6.1+20181013-2), libnettle6 (= 3.4.1-1), libp11-kit0 (= 0.23.15-2), libpam-modules (= 1.3.1-5), libpam-modules-bin (= 1.3.1-5), libpam-runtime (= 1.3.1-5), libpam0g (= 1.3.1-5), libpcre3 (= 2:8.39-12), libperl5.28 (= 5.28.1-4), libpipeline1 (= 1.5.1-2), libquadmath0 (= 8.3.0-2), libseccomp2 (= 2.3.3-4), libselinux1 (= 2.8-1+b1), libsemanage-common (= 2.8-2), libsemanage1 (= 2.8-2), libsepol1 (= 2.8-1), libsigsegv2 (= 2.12-2), libsmartcols1 (= 2.33.1-0.1), libstdc++-8-dev (= 8.3.0-2), libstdc++6 (= 8.3.0-2), libsystemd0 (= 241-1), libtasn1-6 (= 4.13-3), libtinfo6 (= 6.1+20181013-2), libtool (= 2.4.6-10), libtsan0 (= 8.3.0-2), libubsan1 (= 8.3.0-2), libuchardet0 (= 0.0.6-3), libudev1 (= 241-1), libunistring2 (= 0.9.10-1), libuuid1 (= 2.33.1-0.1), libxml2 (= 2.9.4+dfsg1-7+b3), libzstd1 (= 1.3.8+dfsg-3), linux-libc-dev (= 4.19.20-1), login (= 1:4.5-1.1), m4 (= 1.4.18-2), make (= 4.2.1-1.2), man-db (= 2.8.5-2), mawk (= 1.3.3-17+b3), ncurses-base (= 6.1+20181013-2), ncurses-bin (= 6.1+20181013-2), passwd (= 1:4.5-1.1), patch (= 2.7.6-3), perl (= 5.28.1-4), perl-base (= 5.28.1-4), perl-modules-5.28 (= 5.28.1-4), po-debconf (= 1.0.21), sed (= 4.7-1), sensible-utils (= 0.0.12), sysvinit-utils (= 2.93-8), tar (= 1.30+dfsg-5), util-linux (= 2.33.1-0.1), xz-utils (= 5.2.4-1), zlib1g (= 1:1.2.11.dfsg-1), zlib1g-dev (= 1:1.2.11.dfsg-1) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="en_US.UTF-8" LC_ALL="POSIX" SOURCE_DATE_EPOCH="1531854569" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ libgkarrays-dev_2.1.0+dfsg-2_arm64.deb -------------------------------------- new Debian package, version 2.0. size 80488 bytes: control archive=1564 bytes. 963 bytes, 23 lines control 1982 bytes, 25 lines md5sums Package: libgkarrays-dev Source: libgkarrays Version: 2.1.0+dfsg-2 Architecture: arm64 Maintainer: Debian Med Packaging Team Installed-Size: 492 Depends: libgkarrays1 (= 2.1.0+dfsg-2) Section: libdevel Priority: optional Homepage: http://crac.gforge.inria.fr/gkarrays/ Description: library to query large collection of NGS sequences (development) Gk-arrays are provided as a simple-to-use C++ library dedicated to queries on large collection of sequences as produced by high-throughput sequencers (e.g. HiSeq 2000 from Illumina, 454 from Roche). . Gk-arrays index k-mers of reads and allows one to answer different queries on that read collection (e.g. how many reads share this k-mer? where does this k-mer occur in the read collection?). . Gk-arrays consist of a space-efficient alternative to hash tables while being similar in terms of query times. . This is the development library for libgkarrays. drwxr-xr-x root/root 0 2018-07-17 19:09 ./ drwxr-xr-x root/root 0 2018-07-17 19:09 ./usr/ drwxr-xr-x root/root 0 2018-07-17 19:09 ./usr/include/ lrwxrwxrwx root/root 0 2018-07-17 19:09 ./usr/include/libGkArrays -> libGkArrays-2.1.0 drwxr-xr-x root/root 0 2018-07-17 19:09 ./usr/include/libGkArrays-2.1.0/ -rw-r--r-- root/root 8288 2018-07-17 19:09 ./usr/include/libGkArrays-2.1.0/binvect.hxx -rw-r--r-- root/root 19920 2018-07-17 19:09 ./usr/include/libGkArrays-2.1.0/bitvector.cxx -rw-r--r-- root/root 9852 2018-07-17 19:09 ./usr/include/libGkArrays-2.1.0/bitvector.hxx -rw-r--r-- root/root 20802 2018-07-17 19:09 ./usr/include/libGkArrays-2.1.0/gkArrays.h -rw-r--r-- root/root 8854 2018-07-17 19:09 ./usr/include/libGkArrays-2.1.0/gkArraysBuilder.h -rw-r--r-- root/root 8559 2018-07-17 19:09 ./usr/include/libGkArrays-2.1.0/gkArraysTypes.h -rw-r--r-- root/root 9026 2018-07-17 19:09 ./usr/include/libGkArrays-2.1.0/gkCFPSBuilder.h -rw-r--r-- root/root 9283 2018-07-17 19:09 ./usr/include/libGkArrays-2.1.0/gkIFABuilder.h -rw-r--r-- root/root 12439 2018-07-17 19:09 ./usr/include/libGkArrays-2.1.0/gkSABuilder.h drwxr-xr-x root/root 0 2018-07-17 19:09 ./usr/include/libGkArrays-2.1.0/kseq/ -rw-r--r-- root/root 12765 2018-07-17 19:09 ./usr/include/libGkArrays-2.1.0/kseq/kseq.h -rw-r--r-- root/root 49375 2018-07-17 19:09 ./usr/include/libGkArrays-2.1.0/largebinvect.cxx -rw-r--r-- root/root 14569 2018-07-17 19:09 ./usr/include/libGkArrays-2.1.0/largebinvect.hxx -rw-r--r-- root/root 16651 2018-07-17 19:09 ./usr/include/libGkArrays-2.1.0/readsReader.h -rw-r--r-- root/root 12355 2018-07-17 19:09 ./usr/include/libGkArrays-2.1.0/solArray.h drwxr-xr-x root/root 0 2018-07-17 19:09 ./usr/include/libGkArrays-2.1.0/sux/ -rw-r--r-- root/root 1661 2018-07-17 19:09 ./usr/include/libGkArrays-2.1.0/sux/macros.h -rw-r--r-- root/root 605 2018-07-17 19:09 ./usr/include/libGkArrays-2.1.0/sux/popcount.h -rw-r--r-- root/root 3115 2018-07-17 19:09 ./usr/include/libGkArrays-2.1.0/sux/rank9b.h lrwxrwxrwx root/root 0 2018-07-17 19:09 ./usr/include/libProgressBar -> libProgressBar-1.2.0 drwxr-xr-x root/root 0 2018-07-17 19:09 ./usr/include/libProgressBar-1.2.0/ -rw-r--r-- root/root 8886 2018-07-17 19:09 ./usr/include/libProgressBar-1.2.0/progressBar.h drwxr-xr-x root/root 0 2018-07-17 19:09 ./usr/lib/ drwxr-xr-x root/root 0 2018-07-17 19:09 ./usr/lib/aarch64-linux-gnu/ -rw-r--r-- root/root 190034 2018-07-17 19:09 ./usr/lib/aarch64-linux-gnu/libGkArrays.a lrwxrwxrwx root/root 0 2018-07-17 19:09 ./usr/lib/aarch64-linux-gnu/libGkArrays.so -> libGkArrays.so.1.1.0 -rw-r--r-- root/root 17320 2018-07-17 19:09 ./usr/lib/aarch64-linux-gnu/libProgressBar.a lrwxrwxrwx root/root 0 2018-07-17 19:09 ./usr/lib/aarch64-linux-gnu/libProgressBar.so -> libProgressBar.so.0.1.2 drwxr-xr-x root/root 0 2018-07-17 19:09 ./usr/lib/aarch64-linux-gnu/pkgconfig/ -rw-r--r-- root/root 245 2018-07-17 19:09 ./usr/lib/aarch64-linux-gnu/pkgconfig/libGkArrays-2.1.0.pc lrwxrwxrwx root/root 0 2018-07-17 19:09 ./usr/lib/aarch64-linux-gnu/pkgconfig/libGkArrays.pc -> libGkArrays-2.1.0.pc -rw-r--r-- root/root 259 2018-07-17 19:09 ./usr/lib/aarch64-linux-gnu/pkgconfig/libProgressBar-1.2.0.pc lrwxrwxrwx root/root 0 2018-07-17 19:09 ./usr/lib/aarch64-linux-gnu/pkgconfig/libProgressBar.pc -> libProgressBar-1.2.0.pc drwxr-xr-x root/root 0 2018-07-17 19:09 ./usr/share/ drwxr-xr-x root/root 0 2018-07-17 19:09 ./usr/share/doc/ drwxr-xr-x root/root 0 2018-07-17 19:09 ./usr/share/doc/libgkarrays-dev/ -rw-r--r-- root/root 250 2018-07-17 19:09 ./usr/share/doc/libgkarrays-dev/changelog.Debian.gz -rw-r--r-- root/root 5768 2013-12-11 14:49 ./usr/share/doc/libgkarrays-dev/changelog.gz -rw-r--r-- root/root 26907 2018-07-17 19:09 ./usr/share/doc/libgkarrays-dev/copyright libgkarrays1-dbgsym_2.1.0+dfsg-2_arm64.deb ------------------------------------------ new Debian package, version 2.0. size 250560 bytes: control archive=604 bytes. 440 bytes, 12 lines control 212 bytes, 2 lines md5sums Package: libgkarrays1-dbgsym Source: libgkarrays Version: 2.1.0+dfsg-2 Auto-Built-Package: debug-symbols Architecture: arm64 Maintainer: Debian Med Packaging Team Installed-Size: 284 Depends: libgkarrays1 (= 2.1.0+dfsg-2) Section: debug Priority: optional Description: debug symbols for libgkarrays1 Build-Ids: 4d4e2ff6014df1ae97d7d619144e87283b6e27cc 6573766478c65bfd3f4a50a8d008d8941791ee9b drwxr-xr-x root/root 0 2018-07-17 19:09 ./ drwxr-xr-x root/root 0 2018-07-17 19:09 ./usr/ drwxr-xr-x root/root 0 2018-07-17 19:09 ./usr/lib/ drwxr-xr-x root/root 0 2018-07-17 19:09 ./usr/lib/debug/ drwxr-xr-x root/root 0 2018-07-17 19:09 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2018-07-17 19:09 ./usr/lib/debug/.build-id/4d/ -rw-r--r-- root/root 270112 2018-07-17 19:09 ./usr/lib/debug/.build-id/4d/4e2ff6014df1ae97d7d619144e87283b6e27cc.debug drwxr-xr-x root/root 0 2018-07-17 19:09 ./usr/lib/debug/.build-id/65/ -rw-r--r-- root/root 8448 2018-07-17 19:09 ./usr/lib/debug/.build-id/65/73766478c65bfd3f4a50a8d008d8941791ee9b.debug drwxr-xr-x root/root 0 2018-07-17 19:09 ./usr/share/ drwxr-xr-x root/root 0 2018-07-17 19:09 ./usr/share/doc/ lrwxrwxrwx root/root 0 2018-07-17 19:09 ./usr/share/doc/libgkarrays1-dbgsym -> libgkarrays1 libgkarrays1_2.1.0+dfsg-2_arm64.deb ----------------------------------- new Debian package, version 2.0. size 51748 bytes: control archive=1108 bytes. 937 bytes, 21 lines control 391 bytes, 5 lines md5sums 57 bytes, 2 lines shlibs 67 bytes, 2 lines triggers Package: libgkarrays1 Source: libgkarrays Version: 2.1.0+dfsg-2 Architecture: arm64 Maintainer: Debian Med Packaging Team Installed-Size: 150 Depends: libc6 (>= 2.17), libgcc1 (>= 1:3.0), libstdc++6 (>= 5.2), zlib1g (>= 1:1.1.4) Section: libs Priority: optional Homepage: http://crac.gforge.inria.fr/gkarrays/ Description: library to query large collection of NGS sequences Gk-arrays are provided as a simple-to-use C++ library dedicated to queries on large collection of sequences as produced by high-throughput sequencers (e.g. HiSeq 2000 from Illumina, 454 from Roche). . Gk-arrays index k-mers of reads and allows one to answer different queries on that read collection (e.g. how many reads share this k-mer? where does this k-mer occur in the read collection?). . Gk-arrays consist of a space-efficient alternative to hash tables while being similar in terms of query times. drwxr-xr-x root/root 0 2018-07-17 19:09 ./ drwxr-xr-x root/root 0 2018-07-17 19:09 ./usr/ drwxr-xr-x root/root 0 2018-07-17 19:09 ./usr/lib/ drwxr-xr-x root/root 0 2018-07-17 19:09 ./usr/lib/aarch64-linux-gnu/ lrwxrwxrwx root/root 0 2018-07-17 19:09 ./usr/lib/aarch64-linux-gnu/libGkArrays.so.1 -> libGkArrays.so.1.1.0 -rw-r--r-- root/root 88040 2018-07-17 19:09 ./usr/lib/aarch64-linux-gnu/libGkArrays.so.1.1.0 lrwxrwxrwx root/root 0 2018-07-17 19:09 ./usr/lib/aarch64-linux-gnu/libProgressBar.so.0 -> libProgressBar.so.0.1.2 -rw-r--r-- root/root 18288 2018-07-17 19:09 ./usr/lib/aarch64-linux-gnu/libProgressBar.so.0.1.2 drwxr-xr-x root/root 0 2018-07-17 19:09 ./usr/share/ drwxr-xr-x root/root 0 2018-07-17 19:09 ./usr/share/doc/ drwxr-xr-x root/root 0 2018-07-17 19:09 ./usr/share/doc/libgkarrays1/ -rw-r--r-- root/root 250 2018-07-17 19:09 ./usr/share/doc/libgkarrays1/changelog.Debian.gz -rw-r--r-- root/root 5768 2013-12-11 14:49 ./usr/share/doc/libgkarrays1/changelog.gz -rw-r--r-- root/root 26907 2018-07-17 19:09 ./usr/share/doc/libgkarrays1/copyright +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 20696 Build-Time: 55 Distribution: unstable Foreign Architectures: arm64 Host Architecture: arm64 Install-Time: 22 Job: libgkarrays_2.1.0+dfsg-2 Lintian: pass Machine Architecture: amd64 Package: libgkarrays Package-Time: 86 Source-Version: 2.1.0+dfsg-2 Space: 20696 Status: successful Version: 2.1.0+dfsg-2 -------------------------------------------------------------------------------- Finished at 2019-03-08T08:06:17Z Build needed 00:01:26, 20696k disk space