sbuild (Debian sbuild) 0.85.0 (04 January 2023) on mjolnir.einval.org +==============================================================================+ | libgkarrays 2.1.0+dfsg-4.2 (amd64) Mon, 04 Mar 2024 13:16:59 +0000 | +==============================================================================+ Package: libgkarrays Version: 2.1.0+dfsg-4.2 Source Version: 2.1.0+dfsg-4.2 Distribution: unstable Machine Architecture: arm64 Host Architecture: amd64 Build Architecture: arm64 Build Profiles: cross nocheck Build Type: any Unpacking /home/helmut/.cache/sbuild/unstable-arm64-sbuild.tar.zst to /tmp/tmp.sbuild.E0d9t53s3v... I: NOTICE: Log filtering will replace 'sbuild-unshare-dummy-location' with '<>' I: NOTICE: Log filtering will replace 'build/libgkarrays-6gwRhW/resolver-wnMo12' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://mirror.einval.org/debian unstable InRelease [198 kB] Get:2 http://mirror.einval.org/debian unstable/main Sources [10.7 MB] Get:3 http://mirror.einval.org/debian unstable/main arm64 Packages [9831 kB] Get:4 http://mirror.einval.org/debian unstable/main amd64 Packages [9937 kB] Fetched 30.6 MB in 8s (4013 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: cpp-13 cpp-13-aarch64-linux-gnu g++-13 g++-13-aarch64-linux-gnu gcc-13 gcc-13-aarch64-linux-gnu gcc-13-base gcc-14-base libasan8 libatomic1 libcc1-0 libgcc-13-dev libgcc-s1 libgomp1 libhwasan0 libitm1 liblsan0 libstdc++-13-dev libstdc++6 libtsan2 libubsan1 21 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 49.9 MB of archives. After this operation, 3072 B of additional disk space will be used. Get:1 http://mirror.einval.org/debian unstable/main arm64 libasan8 arm64 14-20240303-1 [2572 kB] Get:2 http://mirror.einval.org/debian unstable/main arm64 libubsan1 arm64 14-20240303-1 [1034 kB] Get:3 http://mirror.einval.org/debian unstable/main arm64 libstdc++-13-dev arm64 13.2.0-18 [2142 kB] Get:4 http://mirror.einval.org/debian unstable/main arm64 gcc-13 arm64 13.2.0-18 [469 kB] Get:5 http://mirror.einval.org/debian unstable/main arm64 g++-13 arm64 13.2.0-18 [14.7 kB] Get:6 http://mirror.einval.org/debian unstable/main arm64 g++-13-aarch64-linux-gnu arm64 13.2.0-18 [9739 kB] Get:7 http://mirror.einval.org/debian unstable/main arm64 gcc-13-aarch64-linux-gnu arm64 13.2.0-18 [16.9 MB] Get:8 http://mirror.einval.org/debian unstable/main arm64 cpp-13-aarch64-linux-gnu arm64 13.2.0-18 [8864 kB] Get:9 http://mirror.einval.org/debian unstable/main arm64 cpp-13 arm64 13.2.0-18 [1280 B] Get:10 http://mirror.einval.org/debian unstable/main arm64 gcc-13-base arm64 13.2.0-18 [43.5 kB] Get:11 http://mirror.einval.org/debian unstable/main arm64 libgcc-13-dev arm64 13.2.0-18 [2237 kB] Get:12 http://mirror.einval.org/debian unstable/main arm64 libtsan2 arm64 14-20240303-1 [2377 kB] Get:13 http://mirror.einval.org/debian unstable/main arm64 gcc-14-base arm64 14-20240303-1 [42.9 kB] Get:14 http://mirror.einval.org/debian unstable/main arm64 libstdc++6 arm64 14-20240303-1 [636 kB] Get:15 http://mirror.einval.org/debian unstable/main arm64 liblsan0 arm64 14-20240303-1 [1156 kB] Get:16 http://mirror.einval.org/debian unstable/main arm64 libitm1 arm64 14-20240303-1 [23.6 kB] Get:17 http://mirror.einval.org/debian unstable/main arm64 libhwasan0 arm64 14-20240303-1 [1434 kB] Get:18 http://mirror.einval.org/debian unstable/main arm64 libgomp1 arm64 14-20240303-1 [122 kB] Get:19 http://mirror.einval.org/debian unstable/main arm64 libcc1-0 arm64 14-20240303-1 [37.4 kB] Get:20 http://mirror.einval.org/debian unstable/main arm64 libatomic1 arm64 14-20240303-1 [9980 B] Get:21 http://mirror.einval.org/debian unstable/main arm64 libgcc-s1 arm64 14-20240303-1 [43.7 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 49.9 MB in 1s (91.2 MB/s) (Reading database ... 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Download source files with APT ------------------------------ Reading package lists... NOTICE: 'libgkarrays' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/libgkarrays.git Please use: git clone https://salsa.debian.org/med-team/libgkarrays.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 111 kB of source archives. Get:1 http://mirror.einval.org/debian unstable/main libgkarrays 2.1.0+dfsg-4.2 (dsc) [2115 B] Get:2 http://mirror.einval.org/debian unstable/main libgkarrays 2.1.0+dfsg-4.2 (tar) [97.9 kB] Get:3 http://mirror.einval.org/debian unstable/main libgkarrays 2.1.0+dfsg-4.2 (diff) [11.1 kB] Fetched 111 kB in 0s (454 kB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/libgkarrays-6gwRhW/libgkarrays-2.1.0+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/libgkarrays-6gwRhW' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: dpkg-dev (>= 1.22.5), debhelper-compat (= 13), d-shlibs (>= 0.106), zlib1g-dev, libc-dev, libstdc++-dev, build-essential:arm64, fakeroot:arm64, crossbuild-essential-amd64:arm64, libc-dev:amd64, libstdc++-dev:amd64 Filtered Build-Depends: dpkg-dev (>= 1.22.5), debhelper-compat (= 13), d-shlibs (>= 0.106), zlib1g-dev, libc-dev, libstdc++-dev, build-essential:arm64, fakeroot:arm64, crossbuild-essential-amd64:arm64, libc-dev:amd64, libstdc++-dev:amd64 dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [609 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [769 B] Get:5 copy:/<>/apt_archive ./ Packages [812 B] Fetched 2190 B in 0s (105 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Execute external solver... The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-x86-64-linux-gnu bsdextrautils cpp-13-x86-64-linux-gnu cpp-x86-64-linux-gnu cross-config crossbuild-essential-amd64 d-shlibs debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz fakeroot file g++-13-x86-64-linux-gnu g++-x86-64-linux-gnu gcc-13-base:amd64 gcc-13-cross-base gcc-13-x86-64-linux-gnu gcc-13-x86-64-linux-gnu-base gcc-14-base:amd64 gcc-14-cross-base gcc-x86-64-linux-gnu gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan8:amd64 libasan8-amd64-cross libatomic1:amd64 libatomic1-amd64-cross libc6:amd64 libc6-amd64-cross libc6-dev:amd64 libc6-dev-amd64-cross libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev:amd64 libcrypt1:amd64 libdebhelper-perl libdebian-dpkgcross-perl libelf1 libfakeroot libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-13-dev:amd64 libgcc-13-dev-amd64-cross libgcc-s1:amd64 libgcc-s1-amd64-cross libgomp1:amd64 libgomp1-amd64-cross libhwasan0:amd64 libhwasan0-amd64-cross libicu72 libio-string-perl libitm1:amd64 libitm1-amd64-cross liblocale-gettext-perl liblsan0:amd64 liblsan0-amd64-cross libmagic-mgc libmagic1t64 libpipeline1 libquadmath0:amd64 libquadmath0-amd64-cross libstdc++-13-dev:amd64 libstdc++-13-dev-amd64-cross libstdc++6:amd64 libstdc++6-amd64-cross libsub-override-perl libtool libtsan2:amd64 libtsan2-amd64-cross libubsan1:amd64 libubsan1-amd64-cross libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl m4 man-db po-debconf sensible-utils ucf zlib1g:amd64 zlib1g-dev:amd64 Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc gcc-13-locales cpp-13-doc cpp-doc dh-make binutils-multiarch gcc-13-doc manpages-dev flex bison gdb-x86-64-linux-gnu gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff glibc-doc:amd64 libc-l10n:amd64 locales:amd64 libnss-nis:amd64 libnss-nisplus:amd64 manpages-dev:amd64 libstdc++-13-doc:amd64 libtool-doc gfortran | fortran95-compiler gcj-jdk libyaml-shell-perl m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libidn2-0:amd64 libarchive-cpio-perl libltdl-dev libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-x86-64-linux-gnu bsdextrautils cpp-13-x86-64-linux-gnu cpp-x86-64-linux-gnu cross-config crossbuild-essential-amd64 d-shlibs debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz fakeroot file g++-13-x86-64-linux-gnu g++-x86-64-linux-gnu gcc-13-base:amd64 gcc-13-cross-base gcc-13-x86-64-linux-gnu gcc-13-x86-64-linux-gnu-base gcc-14-base:amd64 gcc-14-cross-base gcc-x86-64-linux-gnu gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan8:amd64 libasan8-amd64-cross libatomic1:amd64 libatomic1-amd64-cross libc6:amd64 libc6-amd64-cross libc6-dev:amd64 libc6-dev-amd64-cross libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev:amd64 libcrypt1:amd64 libdebhelper-perl libdebian-dpkgcross-perl libelf1 libfakeroot libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-13-dev:amd64 libgcc-13-dev-amd64-cross libgcc-s1:amd64 libgcc-s1-amd64-cross libgomp1:amd64 libgomp1-amd64-cross libhwasan0:amd64 libhwasan0-amd64-cross libicu72 libio-string-perl libitm1:amd64 libitm1-amd64-cross liblocale-gettext-perl liblsan0:amd64 liblsan0-amd64-cross libmagic-mgc libmagic1t64 libpipeline1 libquadmath0:amd64 libquadmath0-amd64-cross libstdc++-13-dev:amd64 libstdc++-13-dev-amd64-cross libstdc++6:amd64 libstdc++6-amd64-cross libsub-override-perl libtool libtsan2:amd64 libtsan2-amd64-cross libubsan1:amd64 libubsan1-amd64-cross libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl m4 man-db po-debconf sbuild-build-depends-main-dummy:amd64 sensible-utils ucf zlib1g:amd64 zlib1g-dev:amd64 0 upgraded, 97 newly installed, 0 to remove and 0 not upgraded. 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Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [944 B] Get:2 http://mirror.einval.org/debian unstable/main arm64 liblocale-gettext-perl arm64 1.07-6+b1 [15.0 kB] Get:3 http://mirror.einval.org/debian unstable/main arm64 sensible-utils all 0.0.22 [22.4 kB] Get:4 http://mirror.einval.org/debian unstable/main arm64 libmagic-mgc arm64 1:5.45-3 [314 kB] Get:5 http://mirror.einval.org/debian unstable/main arm64 libmagic1t64 arm64 1:5.45-3 [100 kB] Get:6 http://mirror.einval.org/debian unstable/main arm64 file arm64 1:5.45-3 [43.0 kB] Get:7 http://mirror.einval.org/debian unstable/main arm64 gettext-base arm64 0.21-14+b1 [160 kB] Get:8 http://mirror.einval.org/debian unstable/main arm64 libuchardet0 arm64 0.0.8-1+b1 [69.0 kB] Get:9 http://mirror.einval.org/debian unstable/main arm64 groff-base arm64 1.23.0-3 [1127 kB] Get:10 http://mirror.einval.org/debian unstable/main arm64 bsdextrautils arm64 2.39.3-9 [90.4 kB] Get:11 http://mirror.einval.org/debian unstable/main arm64 libpipeline1 arm64 1.5.7-1+b2 [36.7 kB] Get:12 http://mirror.einval.org/debian unstable/main arm64 man-db arm64 2.12.0-3 [1385 kB] Get:13 http://mirror.einval.org/debian unstable/main arm64 ucf all 3.0043+nmu1 [55.2 kB] Get:14 http://mirror.einval.org/debian unstable/main arm64 m4 arm64 1.4.19-4 [277 kB] Get:15 http://mirror.einval.org/debian unstable/main arm64 autoconf all 2.71-3 [332 kB] Get:16 http://mirror.einval.org/debian unstable/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get:17 http://mirror.einval.org/debian unstable/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get:18 http://mirror.einval.org/debian unstable/main arm64 autopoint all 0.21-14 [496 kB] Get:19 http://mirror.einval.org/debian unstable/main arm64 gcc-13-x86-64-linux-gnu-base arm64 13.2.0-12cross1 [42.6 kB] Get:20 http://mirror.einval.org/debian unstable/main arm64 cpp-13-x86-64-linux-gnu arm64 13.2.0-12cross1 [9273 kB] Get:21 http://mirror.einval.org/debian unstable/main arm64 cpp-x86-64-linux-gnu arm64 4:13.2.0-7 [4732 B] Get:22 http://mirror.einval.org/debian unstable/main arm64 cross-config all 2.6.20 [16.3 kB] Get:23 http://mirror.einval.org/debian unstable/main arm64 binutils-x86-64-linux-gnu arm64 2.42-3 [2372 kB] Get:24 http://mirror.einval.org/debian unstable/main arm64 gcc-13-cross-base all 13.2.0-12cross1 [38.1 kB] Get:25 http://mirror.einval.org/debian unstable/main arm64 gcc-14-cross-base all 14-20240127-1cross1 [37.9 kB] Get:26 http://mirror.einval.org/debian unstable/main arm64 libgcc-s1-amd64-cross all 14-20240127-1cross1 [71.7 kB] Get:27 http://mirror.einval.org/debian unstable/main arm64 libgomp1-amd64-cross all 14-20240127-1cross1 [128 kB] Get:28 http://mirror.einval.org/debian unstable/main arm64 libitm1-amd64-cross all 14-20240127-1cross1 [25.2 kB] Get:29 http://mirror.einval.org/debian unstable/main arm64 libatomic1-amd64-cross all 14-20240127-1cross1 [8996 B] Get:30 http://mirror.einval.org/debian unstable/main arm64 libasan8-amd64-cross all 14-20240127-1cross1 [2716 kB] Get:31 http://mirror.einval.org/debian unstable/main arm64 liblsan0-amd64-cross all 14-20240127-1cross1 [1199 kB] Get:32 http://mirror.einval.org/debian unstable/main arm64 libtsan2-amd64-cross all 14-20240127-1cross1 [2444 kB] Get:33 http://mirror.einval.org/debian unstable/main arm64 libc6-amd64-cross all 2.37-12cross1 [1478 kB] Get:34 http://mirror.einval.org/debian unstable/main arm64 libstdc++6-amd64-cross all 14-20240127-1cross1 [667 kB] Get:35 http://mirror.einval.org/debian unstable/main arm64 libubsan1-amd64-cross all 14-20240127-1cross1 [1070 kB] Get:36 http://mirror.einval.org/debian unstable/main arm64 libhwasan0-amd64-cross all 14-20240127-1cross1 [1434 kB] Get:37 http://mirror.einval.org/debian unstable/main arm64 libquadmath0-amd64-cross all 14-20240127-1cross1 [146 kB] Get:38 http://mirror.einval.org/debian unstable/main arm64 libgcc-13-dev-amd64-cross all 13.2.0-12cross1 [2536 kB] Get:39 http://mirror.einval.org/debian unstable/main arm64 gcc-13-x86-64-linux-gnu arm64 13.2.0-12cross1 [17.8 MB] Get:40 http://mirror.einval.org/debian unstable/main arm64 gcc-x86-64-linux-gnu arm64 4:13.2.0-7 [1452 B] Get:41 http://mirror.einval.org/debian unstable/main arm64 libc6-dev-amd64-cross all 2.37-12cross1 [1898 kB] Get:42 http://mirror.einval.org/debian unstable/main arm64 libstdc++-13-dev-amd64-cross all 13.2.0-12cross1 [2210 kB] Get:43 http://mirror.einval.org/debian unstable/main arm64 g++-13-x86-64-linux-gnu arm64 13.2.0-12cross1 [10.1 MB] Get:44 http://mirror.einval.org/debian unstable/main arm64 g++-x86-64-linux-gnu arm64 4:13.2.0-7 [1204 B] Get:45 http://mirror.einval.org/debian unstable/main arm64 libconfig-inifiles-perl all 3.000003-2 [45.9 kB] Get:46 http://mirror.einval.org/debian unstable/main arm64 libio-string-perl all 1.08-4 [12.1 kB] Get:47 http://mirror.einval.org/debian unstable/main arm64 libicu72 arm64 72.1-4+b1 [9224 kB] Get:48 http://mirror.einval.org/debian unstable/main arm64 libxml2 arm64 2.9.14+dfsg-1.3+b2 [624 kB] Get:49 http://mirror.einval.org/debian unstable/main arm64 libxml-namespacesupport-perl all 1.12-2 [15.1 kB] Get:50 http://mirror.einval.org/debian unstable/main arm64 libxml-sax-base-perl all 1.09-3 [20.6 kB] Get:51 http://mirror.einval.org/debian unstable/main arm64 libxml-sax-perl all 1.02+dfsg-3 [59.4 kB] Get:52 http://mirror.einval.org/debian unstable/main arm64 libxml-libxml-perl arm64 2.0207+dfsg+really+2.0134-1+b2 [299 kB] Get:53 http://mirror.einval.org/debian unstable/main arm64 libxml-simple-perl all 2.25-2 [69.8 kB] Get:54 http://mirror.einval.org/debian unstable/main arm64 libyaml-perl all 1.31-1 [64.8 kB] Get:55 http://mirror.einval.org/debian unstable/main arm64 libconfig-auto-perl all 0.44-2 [19.2 kB] Get:56 http://mirror.einval.org/debian unstable/main arm64 libfile-which-perl all 1.27-2 [15.1 kB] Get:57 http://mirror.einval.org/debian unstable/main arm64 libfile-homedir-perl all 1.006-2 [42.4 kB] Get:58 http://mirror.einval.org/debian unstable/main arm64 libdebian-dpkgcross-perl all 2.6.20 [15.3 kB] Get:59 http://mirror.einval.org/debian unstable/main arm64 dpkg-cross all 2.6.20 [25.8 kB] Get:60 http://mirror.einval.org/debian unstable/main arm64 crossbuild-essential-amd64 all 12.10 [3488 B] Get:61 http://mirror.einval.org/debian unstable/main arm64 d-shlibs all 0.106 [10.9 kB] Get:62 http://mirror.einval.org/debian unstable/main arm64 libdebhelper-perl all 13.14.1 [85.6 kB] Get:63 http://mirror.einval.org/debian unstable/main arm64 libtool all 2.4.7-7 [517 kB] Get:64 http://mirror.einval.org/debian unstable/main arm64 dh-autoreconf all 20 [17.1 kB] Get:65 http://mirror.einval.org/debian unstable/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get:66 http://mirror.einval.org/debian unstable/main arm64 libsub-override-perl all 0.10-1 [10.6 kB] Get:67 http://mirror.einval.org/debian unstable/main arm64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get:68 http://mirror.einval.org/debian unstable/main arm64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get:69 http://mirror.einval.org/debian unstable/main arm64 libelf1 arm64 0.190-1+b1 [175 kB] Get:70 http://mirror.einval.org/debian unstable/main arm64 dwz arm64 0.15-1 [101 kB] Get:71 http://mirror.einval.org/debian unstable/main arm64 gettext arm64 0.21-14+b1 [1249 kB] Get:72 http://mirror.einval.org/debian unstable/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get:73 http://mirror.einval.org/debian unstable/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get:74 http://mirror.einval.org/debian unstable/main arm64 debhelper all 13.14.1 [890 kB] Get:75 http://mirror.einval.org/debian unstable/main arm64 libfakeroot arm64 1.33-1 [28.3 kB] Get:76 http://mirror.einval.org/debian unstable/main arm64 fakeroot arm64 1.33-1 [73.5 kB] Get:77 http://mirror.einval.org/debian unstable/main amd64 gcc-13-base amd64 13.2.0-18 [43.5 kB] Get:78 http://mirror.einval.org/debian unstable/main amd64 gcc-14-base amd64 14-20240303-1 [42.8 kB] Get:79 http://mirror.einval.org/debian unstable/main amd64 libgcc-s1 amd64 14-20240303-1 [72.2 kB] Get:80 http://mirror.einval.org/debian unstable/main amd64 libc6 amd64 2.37-15.1 [2752 kB] Get:81 http://mirror.einval.org/debian unstable/main amd64 libasan8 amd64 14-20240303-1 [2723 kB] Get:82 http://mirror.einval.org/debian unstable/main amd64 libatomic1 amd64 14-20240303-1 [9208 B] Get:83 http://mirror.einval.org/debian unstable/main amd64 libcrypt1 amd64 1:4.4.36-4 [89.8 kB] Get:84 http://mirror.einval.org/debian unstable/main amd64 libcrypt-dev amd64 1:4.4.36-4 [119 kB] Get:85 http://mirror.einval.org/debian unstable/main amd64 libc6-dev amd64 2.37-15.1 [1905 kB] Get:86 http://mirror.einval.org/debian unstable/main amd64 libgomp1 amd64 14-20240303-1 [136 kB] Get:87 http://mirror.einval.org/debian unstable/main amd64 libitm1 amd64 14-20240303-1 [25.9 kB] Get:88 http://mirror.einval.org/debian unstable/main amd64 liblsan0 amd64 14-20240303-1 [1201 kB] Get:89 http://mirror.einval.org/debian unstable/main amd64 libtsan2 amd64 14-20240303-1 [2455 kB] Get:90 http://mirror.einval.org/debian unstable/main amd64 libstdc++6 amd64 14-20240303-1 [713 kB] Get:91 http://mirror.einval.org/debian unstable/main amd64 libubsan1 amd64 14-20240303-1 [1071 kB] Get:92 http://mirror.einval.org/debian unstable/main amd64 libhwasan0 amd64 14-20240303-1 [1485 kB] Get:93 http://mirror.einval.org/debian unstable/main amd64 libquadmath0 amd64 14-20240303-1 [147 kB] Get:94 http://mirror.einval.org/debian unstable/main amd64 libgcc-13-dev amd64 13.2.0-18 [2544 kB] Get:95 http://mirror.einval.org/debian unstable/main amd64 libstdc++-13-dev amd64 13.2.0-18 [2211 kB] Get:96 http://mirror.einval.org/debian unstable/main amd64 zlib1g amd64 1:1.3.dfsg-3.1 [87.6 kB] Get:97 http://mirror.einval.org/debian unstable/main amd64 zlib1g-dev amd64 1:1.3.dfsg-3.1 [918 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 98.1 MB in 1s (90.4 MB/s) Selecting previously unselected package liblocale-gettext-perl. (Reading database ... 11883 files and directories currently installed.) Preparing to unpack .../00-liblocale-gettext-perl_1.07-6+b1_arm64.deb ... Unpacking liblocale-gettext-perl (1.07-6+b1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.22_all.deb ... Unpacking sensible-utils (0.0.22) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../02-libmagic-mgc_1%3a5.45-3_arm64.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../03-libmagic1t64_1%3a5.45-3_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.45-3) ... Selecting previously unselected package file. Preparing to unpack .../04-file_1%3a5.45-3_arm64.deb ... Unpacking file (1:5.45-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../05-gettext-base_0.21-14+b1_arm64.deb ... Unpacking gettext-base (0.21-14+b1) ... 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Preparing to unpack .../18-cpp-13-x86-64-linux-gnu_13.2.0-12cross1_arm64.deb ... Unpacking cpp-13-x86-64-linux-gnu (13.2.0-12cross1) ... Selecting previously unselected package cpp-x86-64-linux-gnu. Preparing to unpack .../19-cpp-x86-64-linux-gnu_4%3a13.2.0-7_arm64.deb ... Unpacking cpp-x86-64-linux-gnu (4:13.2.0-7) ... Selecting previously unselected package cross-config. Preparing to unpack .../20-cross-config_2.6.20_all.deb ... Unpacking cross-config (2.6.20) ... Selecting previously unselected package binutils-x86-64-linux-gnu. Preparing to unpack .../21-binutils-x86-64-linux-gnu_2.42-3_arm64.deb ... Unpacking binutils-x86-64-linux-gnu (2.42-3) ... Selecting previously unselected package gcc-13-cross-base. Preparing to unpack .../22-gcc-13-cross-base_13.2.0-12cross1_all.deb ... Unpacking gcc-13-cross-base (13.2.0-12cross1) ... Selecting previously unselected package gcc-14-cross-base. Preparing to unpack .../23-gcc-14-cross-base_14-20240127-1cross1_all.deb ... Unpacking gcc-14-cross-base (14-20240127-1cross1) ... Selecting previously unselected package libgcc-s1-amd64-cross. Preparing to unpack .../24-libgcc-s1-amd64-cross_14-20240127-1cross1_all.deb ... Unpacking libgcc-s1-amd64-cross (14-20240127-1cross1) ... Selecting previously unselected package libgomp1-amd64-cross. Preparing to unpack .../25-libgomp1-amd64-cross_14-20240127-1cross1_all.deb ... Unpacking libgomp1-amd64-cross (14-20240127-1cross1) ... Selecting previously unselected package libitm1-amd64-cross. Preparing to unpack .../26-libitm1-amd64-cross_14-20240127-1cross1_all.deb ... Unpacking libitm1-amd64-cross (14-20240127-1cross1) ... Selecting previously unselected package libatomic1-amd64-cross. Preparing to unpack .../27-libatomic1-amd64-cross_14-20240127-1cross1_all.deb ... Unpacking libatomic1-amd64-cross (14-20240127-1cross1) ... Selecting previously unselected package libasan8-amd64-cross. Preparing to unpack .../28-libasan8-amd64-cross_14-20240127-1cross1_all.deb ... 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Setting up libxml-libxml-perl (2.0207+dfsg+really+2.0134-1+b2) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libstdc++-13-dev-amd64-cross (13.2.0-12cross1) ... Setting up gcc-13-x86-64-linux-gnu (13.2.0-12cross1) ... Setting up debhelper (13.14.1) ... Setting up libxml-simple-perl (2.25-2) ... Setting up g++-13-x86-64-linux-gnu (13.2.0-12cross1) ... Setting up gcc-x86-64-linux-gnu (4:13.2.0-7) ... Setting up libconfig-auto-perl (0.44-2) ... Setting up g++-x86-64-linux-gnu (4:13.2.0-7) ... Setting up libdebian-dpkgcross-perl (2.6.20) ... Setting up dpkg-cross (2.6.20) ... Setting up crossbuild-essential-amd64 (12.10) ... Setting up libgcc-s1:amd64 (14-20240303-1) ... 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Processing triggers for libc-bin (2.37-15.1) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 6.1.0-7-arm64 #1 SMP Debian 6.1.20-1 (2023-03-19) arm64 (aarch64) Toolchain package versions: binutils_2.42-3 dpkg-dev_1.22.5 g++-13_13.2.0-18 gcc-13_13.2.0-18 libc6-dev_2.37-15.1 libstdc++-13-dev_13.2.0-18 libstdc++-13-dev-amd64-cross_13.2.0-12cross1 libstdc++6_14-20240303-1 libstdc++6-amd64-cross_14-20240127-1cross1 linux-libc-dev_6.7.7-1 Package versions: apt_2.7.13+b1 autoconf_2.71-3 automake_1:1.16.5-1.3 autopoint_0.21-14 autotools-dev_20220109.1 base-files_13 base-passwd_3.6.3 bash_5.2.21-2 binutils_2.42-3 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+------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: libgkarrays Binary: libgkarrays1t64, libgkarrays-dev Architecture: any Version: 2.1.0+dfsg-4.2 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: http://crac.gforge.inria.fr/gkarrays/ Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/med-team/libgkarrays Vcs-Git: https://salsa.debian.org/med-team/libgkarrays.git Build-Depends: dpkg-dev (>= 1.22.5), debhelper-compat (= 13), d-shlibs (>= 0.106), zlib1g-dev Package-List: libgkarrays-dev deb libdevel optional arch=any libgkarrays1t64 deb libs optional arch=any Checksums-Sha1: fd7dafda51703ba61c8221ba158143c376bc1d86 97880 libgkarrays_2.1.0+dfsg.orig.tar.xz 6d98f22309f68fea8cd4d130b6fa47aaef948f47 11084 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APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.amd64 DEB_BUILD_OPTIONS=nocheck HOME=/var/lib/sbuild LANG=en_GB.UTF-8 LC_ALL=C.UTF-8 LOGNAME=helmut OLDPWD=/ PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games PWD=/<> SHELL=/bin/sh USER=helmut dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -aamd64 -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package libgkarrays dpkg-buildpackage: info: source version 2.1.0+dfsg-4.2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Benjamin Drung dpkg-architecture: warning: specified GNU system type x86_64-linux-gnu does not match CC system type aarch64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_clean debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a aclocal: warning: couldn't open directory 'config/m4': No such file or directory autoreconf: warning: autoconf input should be named 'configure.ac', not 'configure.in' aclocal: warning: autoconf input should be named 'configure.ac', not 'configure.in' aclocal: warning: couldn't open directory 'm4': No such file or directory libtoolize: putting auxiliary files in '.'. libtoolize: copying file './ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'. libtoolize: copying file 'm4/libtool.m4' libtoolize: copying file 'm4/ltoptions.m4' libtoolize: copying file 'm4/ltsugar.m4' libtoolize: copying file 'm4/ltversion.m4' libtoolize: copying file 'm4/lt~obsolete.m4' aclocal: warning: autoconf input should be named 'configure.ac', not 'configure.in' configure.in:32: warning: The macro `AM_PROG_LIBTOOL' is obsolete. configure.in:32: You should run autoupdate. m4/libtool.m4:101: AM_PROG_LIBTOOL is expanded from... configure.in:32: the top level configure.in:74: warning: The macro `AC_HEADER_STDC' is obsolete. configure.in:74: You should run autoupdate. ./lib/autoconf/headers.m4:704: AC_HEADER_STDC is expanded from... configure.in:74: the top level autoheader: warning: autoconf input should be named 'configure.ac', not 'configure.in' automake: warning: autoconf input should be named 'configure.ac', not 'configure.in' configure.in:32: installing './compile' configure.in:32: installing './config.guess' configure.in:32: installing './config.sub' configure.in:31: installing './install-sh' configure.in:31: installing './missing' automake: warning: autoconf input should be named 'configure.ac', not 'configure.in' doc/Makefile.am:2: warning: suffix '.texinfo' for Texinfo files is discouraged; use '.texi' instead doc/Makefile.am:2: installing 'doc/texinfo.tex' libProgressBar/Makefile.am: installing './depcomp' libtoolize: putting auxiliary files in AC_CONFIG_AUX_DIR, 'config'. libtoolize: copying file 'config/ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'config/m4'. libtoolize: copying file 'config/m4/libtool.m4' libtoolize: copying file 'config/m4/ltoptions.m4' libtoolize: copying file 'config/m4/ltsugar.m4' libtoolize: copying file 'config/m4/ltversion.m4' libtoolize: copying file 'config/m4/lt~obsolete.m4' configure.ac:213: installing 'config/compile' configure.ac:231: installing 'config/config.guess' configure.ac:231: installing 'config/config.sub' configure.ac:206: installing 'config/install-sh' configure.ac:206: installing 'config/missing' doc/Makefile.am:107: installing 'config/texinfo.tex' src/Makefile.am:117: warning: source file '$(SUX_DIR)/rank9b.cpp' is in a subdirectory, src/Makefile.am:117: but option 'subdir-objects' is disabled automake: warning: possible forward-incompatibility. automake: At least one source file is in a subdirectory, but the 'subdir-objects' automake: automake option hasn't been enabled. For now, the corresponding output automake: object file(s) will be placed in the top-level directory. However, this automake: behavior may change in a future Automake major version, with object automake: files being placed in the same subdirectory as the corresponding sources. automake: You are advised to start using 'subdir-objects' option throughout your automake: project, to avoid future incompatibilities. src/Makefile.am: installing 'config/depcomp' tests/Makefile.am:125: warning: wildcard dataset/*.fa: non-POSIX variable name tests/Makefile.am:125: (probably a GNU make extension) parallel-tests: installing 'config/test-driver' dh_auto_configure -a ./configure --build=aarch64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --host=x86_64-linux-gnu configure: loading site script /etc/dpkg-cross/cross-config.amd64 checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for x86_64-linux-gnu-strip... x86_64-linux-gnu-strip checking for a race-free mkdir -p... /usr/bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for x86_64-linux-gnu-g++... x86_64-linux-gnu-g++ checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... yes checking for suffix of object files... o checking whether the compiler supports GNU C++... yes checking whether x86_64-linux-gnu-g++ accepts -g... yes checking for x86_64-linux-gnu-g++ option to enable C++11 features... none needed checking whether make supports the include directive... yes (GNU style) checking dependency style of x86_64-linux-gnu-g++... none checking for gawk... (cached) mawk checking for x86_64-linux-gnu-gcc... x86_64-linux-gnu-gcc checking whether the compiler supports GNU C... yes checking whether x86_64-linux-gnu-gcc accepts -g... yes checking for x86_64-linux-gnu-gcc option to enable C11 features... none needed checking whether x86_64-linux-gnu-gcc understands -c and -o together... yes checking dependency style of x86_64-linux-gnu-gcc... none checking how to run the C preprocessor... x86_64-linux-gnu-gcc -E checking whether ln -s works... yes checking whether make sets $(MAKE)... (cached) yes checking for texi2dvi... no checking for pdftex... no checking for kpsewhich... no configure: WARNING: The 'texi2dvi' or 'pdftex' program could not be found. This isn't critical, but it means that you won't be able to create the documentation and thus to make releases. configure: WARNING: The 'texi2dvi' or 'pdftex' is missing a correct latex installation. This isn't critical, but it means that you won't be able to create the documentation and thus to make releases. checking build system type... aarch64-unknown-linux-gnu checking host system type... x86_64-pc-linux-gnu checking how to print strings... printf checking for a sed that does not truncate output... /usr/bin/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking for ld used by x86_64-linux-gnu-gcc... /usr/x86_64-linux-gnu/bin/ld checking if the linker (/usr/x86_64-linux-gnu/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/x86_64-linux-gnu-nm -B checking the name lister (/usr/bin/x86_64-linux-gnu-nm -B) interface... BSD nm checking the maximum length of command line arguments... 1572864 checking how to convert aarch64-unknown-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop checking how to convert aarch64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/x86_64-linux-gnu/bin/ld option to reload object files... -r checking for x86_64-linux-gnu-file... no checking for file... file configure: WARNING: using cross tools not prefixed with host triplet checking for x86_64-linux-gnu-objdump... x86_64-linux-gnu-objdump checking how to recognize dependent libraries... pass_all checking for x86_64-linux-gnu-dlltool... no checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for x86_64-linux-gnu-ar... x86_64-linux-gnu-ar checking for archiver @FILE support... @ checking for x86_64-linux-gnu-strip... (cached) x86_64-linux-gnu-strip checking for x86_64-linux-gnu-ranlib... x86_64-linux-gnu-ranlib checking command to parse /usr/bin/x86_64-linux-gnu-nm -B output from x86_64-linux-gnu-gcc object... ok checking for sysroot... no checking for a working dd... /usr/bin/dd checking how to truncate binary pipes... /usr/bin/dd bs=4096 count=1 checking for x86_64-linux-gnu-mt... no checking for mt... no checking if : is a manifest tool... no checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if x86_64-linux-gnu-gcc supports -fno-rtti -fno-exceptions... no checking for x86_64-linux-gnu-gcc option to produce PIC... -fPIC -DPIC checking if x86_64-linux-gnu-gcc PIC flag -fPIC -DPIC works... yes checking if x86_64-linux-gnu-gcc static flag -static works... yes checking if x86_64-linux-gnu-gcc supports -c -o file.o... yes checking if x86_64-linux-gnu-gcc supports -c -o file.o... (cached) yes checking whether the x86_64-linux-gnu-gcc linker (/usr/x86_64-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking how to run the C++ preprocessor... x86_64-linux-gnu-g++ -E checking for ld used by x86_64-linux-gnu-g++... /usr/x86_64-linux-gnu/bin/ld -m elf_x86_64 checking if the linker (/usr/x86_64-linux-gnu/bin/ld -m elf_x86_64) is GNU ld... yes checking whether the x86_64-linux-gnu-g++ linker (/usr/x86_64-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes checking for x86_64-linux-gnu-g++ option to produce PIC... -fPIC -DPIC checking if x86_64-linux-gnu-g++ PIC flag -fPIC -DPIC works... yes checking if x86_64-linux-gnu-g++ static flag -static works... yes checking if x86_64-linux-gnu-g++ supports -c -o file.o... yes checking if x86_64-linux-gnu-g++ supports -c -o file.o... (cached) yes checking whether the x86_64-linux-gnu-g++ linker (/usr/x86_64-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for ld used by x86_64-linux-gnu-gcc... (cached) /usr/x86_64-linux-gnu/bin/ld checking if the linker (/usr/x86_64-linux-gnu/bin/ld) is GNU ld... (cached) yes checking for dpkg... /usr/bin/dpkg checking for stdint.h... (cached) yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for sys/time.h... yes checking for inline... inline checking for GNU libc compatible malloc... (cached) yes checking for GNU libc compatible realloc... (cached) yes checking for gettimeofday... yes checking for memset... yes checking for select... yes checking for _Bool... yes checking for stdbool.h that conforms to C99... yes checking for size_t... yes checking for uint8_t... yes checking for uint32_t... yes checking for uint64_t... yes checking for unsigned long long int... yes checking for gzread in -lz... yes checking for pthread_create in -lpthread... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating postinst chmod: cannot access 'prerm': No such file or directory config.status: creating prerm config.status: creating control config.status: creating libGkArrays.pc config.status: creating Makefile config.status: creating src/Makefile config.status: creating tests/Makefile config.status: creating src/sux/Makefile config.status: creating src/kseq/Makefile config.status: creating doc/Makefile config.status: creating doc/libGkArrays.3 config.status: creating doc/package.texi config.status: creating config/config.h config.status: executing depfiles commands config.status: executing libtool commands === configuring in src/libProgressBar-1.2.0 (/<>/src/libProgressBar-1.2.0) configure: running /bin/bash ./configure --disable-option-checking '--prefix=/usr' '--build=aarch64-linux-gnu' '--includedir=${prefix}/include' '--mandir=${prefix}/share/man' '--infodir=${prefix}/share/info' '--sysconfdir=/etc' '--localstatedir=/var' '--disable-silent-rules' '--libdir=${prefix}/lib/x86_64-linux-gnu' '--runstatedir=/run' '--disable-maintainer-mode' '--disable-dependency-tracking' '--host=x86_64-linux-gnu' 'build_alias=aarch64-linux-gnu' 'host_alias=x86_64-linux-gnu' 'CXXFLAGS=-g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection' 'LDFLAGS=-Wl,-z,relro -Wl,-z,now' 'CPPFLAGS=-Wdate-time -D_FORTIFY_SOURCE=2' 'CFLAGS=-g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection' --cache-file=/dev/null --srcdir=. configure: loading site script /etc/dpkg-cross/cross-config.amd64 checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for x86_64-linux-gnu-strip... x86_64-linux-gnu-strip checking for a race-free mkdir -p... /usr/bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking build system type... aarch64-unknown-linux-gnu checking host system type... x86_64-pc-linux-gnu checking how to print strings... printf checking whether make supports the include directive... yes (GNU style) checking for x86_64-linux-gnu-gcc... x86_64-linux-gnu-gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... yes checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether x86_64-linux-gnu-gcc accepts -g... yes checking for x86_64-linux-gnu-gcc option to enable C11 features... none needed checking whether x86_64-linux-gnu-gcc understands -c and -o together... yes checking dependency style of x86_64-linux-gnu-gcc... none checking for a sed that does not truncate output... /usr/bin/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking for ld used by x86_64-linux-gnu-gcc... /usr/x86_64-linux-gnu/bin/ld checking if the linker (/usr/x86_64-linux-gnu/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/x86_64-linux-gnu-nm -B checking the name lister (/usr/bin/x86_64-linux-gnu-nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert aarch64-unknown-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop checking how to convert aarch64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/x86_64-linux-gnu/bin/ld option to reload object files... -r checking for x86_64-linux-gnu-file... no checking for file... file configure: WARNING: using cross tools not prefixed with host triplet checking for x86_64-linux-gnu-objdump... x86_64-linux-gnu-objdump checking how to recognize dependent libraries... pass_all checking for x86_64-linux-gnu-dlltool... no checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for x86_64-linux-gnu-ar... x86_64-linux-gnu-ar checking for archiver @FILE support... @ checking for x86_64-linux-gnu-strip... (cached) x86_64-linux-gnu-strip checking for x86_64-linux-gnu-ranlib... x86_64-linux-gnu-ranlib checking command to parse /usr/bin/x86_64-linux-gnu-nm -B output from x86_64-linux-gnu-gcc object... ok checking for sysroot... no checking for a working dd... /usr/bin/dd checking how to truncate binary pipes... /usr/bin/dd bs=4096 count=1 checking for x86_64-linux-gnu-mt... no checking for mt... no checking if : is a manifest tool... no checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if x86_64-linux-gnu-gcc supports -fno-rtti -fno-exceptions... no checking for x86_64-linux-gnu-gcc option to produce PIC... -fPIC -DPIC checking if x86_64-linux-gnu-gcc PIC flag -fPIC -DPIC works... yes checking if x86_64-linux-gnu-gcc static flag -static works... yes checking if x86_64-linux-gnu-gcc supports -c -o file.o... yes checking if x86_64-linux-gnu-gcc supports -c -o file.o... (cached) yes checking whether the x86_64-linux-gnu-gcc linker (/usr/x86_64-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for x86_64-linux-gnu-gcc... (cached) x86_64-linux-gnu-gcc checking whether the compiler supports GNU C... (cached) yes checking whether x86_64-linux-gnu-gcc accepts -g... (cached) yes checking for x86_64-linux-gnu-gcc option to enable C11 features... (cached) none needed checking whether x86_64-linux-gnu-gcc understands -c and -o together... (cached) yes checking dependency style of x86_64-linux-gnu-gcc... (cached) none checking for x86_64-linux-gnu-g++... x86_64-linux-gnu-g++ checking whether the compiler supports GNU C++... yes checking whether x86_64-linux-gnu-g++ accepts -g... yes checking for x86_64-linux-gnu-g++ option to enable C++11 features... none needed checking dependency style of x86_64-linux-gnu-g++... none checking how to run the C++ preprocessor... x86_64-linux-gnu-g++ -E checking for ld used by x86_64-linux-gnu-g++... /usr/x86_64-linux-gnu/bin/ld -m elf_x86_64 checking if the linker (/usr/x86_64-linux-gnu/bin/ld -m elf_x86_64) is GNU ld... yes checking whether the x86_64-linux-gnu-g++ linker (/usr/x86_64-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes checking for x86_64-linux-gnu-g++ option to produce PIC... -fPIC -DPIC checking if x86_64-linux-gnu-g++ PIC flag -fPIC -DPIC works... yes checking if x86_64-linux-gnu-g++ static flag -static works... yes checking if x86_64-linux-gnu-g++ supports -c -o file.o... yes checking if x86_64-linux-gnu-g++ supports -c -o file.o... (cached) yes checking whether the x86_64-linux-gnu-g++ linker (/usr/x86_64-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for dpkg... /usr/bin/dpkg checking for rpmbuild... no checking for rpm... no checking for texi2dvi... no checking for pdftex... no checking for kpsewhich... no configure: WARNING: The 'texi2dvi' or 'pdftex' program could not be found. This isn't critical, but it means that you won't be able to create the documentation and thus to make releases. configure: WARNING: The 'texi2dvi' or 'pdftex' is missing a correct latex installation. This isn't critical, but it means that you won't be able to create the documentation and thus to make releases. checking for an ANSI C-conforming const... yes checking for inline... inline checking for sys/mkdev.h... no checking for sys/sysmacros.h... yes checking for size_t... yes checking for working alloca.h... yes checking for alloca... yes checking whether struct tm is in sys/time.h or time.h... time.h checking for struct stat.st_blocks... yes checking whether ln -s works... yes checking for egrep... (cached) /usr/bin/grep -E checking for unistd.h... (cached) yes checking for sys/param.h... yes checking for sys/time.h... yes checking for time.h... yes checking for sys/sysmacros.h... (cached) yes checking for string.h... (cached) yes checking for strings.h... (cached) yes checking for memory.h... yes checking for fcntl.h... yes checking for alloca.h... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating postinst chmod: cannot access 'prerm': No such file or directory config.status: creating prerm config.status: creating libProgressBar.lsm config.status: creating libProgressBar.spec config.status: creating control config.status: creating libProgressBar.pc config.status: creating Makefile config.status: creating libProgressBar/Makefile config.status: creating doc/Makefile config.status: creating doc/libProgressBar.3 config.status: creating libProgressBar/config.h config.status: executing depfiles commands config.status: executing libtool commands dh_auto_build -a make -j1 make[1]: Entering directory '/<>' Making all in src make[2]: Entering directory '/<>/src' Making all in kseq make[3]: Entering directory '/<>/src/kseq' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/<>/src/kseq' Making all in sux make[3]: Entering directory '/<>/src/sux' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/<>/src/sux' Making all in libProgressBar-1.2.0 make[3]: Entering directory '/<>/src/libProgressBar-1.2.0' Making all in libProgressBar make[4]: Entering directory '/<>/src/libProgressBar-1.2.0/libProgressBar' make all-am make[5]: Entering directory '/<>/src/libProgressBar-1.2.0/libProgressBar' x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -O6 -Wall --pedantic --ansi -c -o testPB.o testPB.cpp /bin/bash ../libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -O6 -Wall --pedantic --ansi -c -o progressBar.lo progressBar.cpp libtool: compile: x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -O6 -Wall --pedantic --ansi -c progressBar.cpp -fPIC -DPIC -o .libs/progressBar.o libtool: compile: x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -O6 -Wall --pedantic --ansi -c progressBar.cpp -o progressBar.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=link x86_64-linux-gnu-g++ -O6 -Wall --pedantic --ansi -version-info 1:2:1 -Wl,-z,relro -Wl,-z,now -o libProgressBar.la -rpath /usr/lib/x86_64-linux-gnu progressBar.lo libtool: link: x86_64-linux-gnu-g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc-cross/x86_64-linux-gnu/13/../../../../x86_64-linux-gnu/lib/../lib/crti.o /usr/lib/gcc-cross/x86_64-linux-gnu/13/crtbeginS.o .libs/progressBar.o -L/usr/lib/gcc-cross/x86_64-linux-gnu/13 -L/usr/lib/gcc-cross/x86_64-linux-gnu/13/../../../../x86_64-linux-gnu/lib/../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc-cross/x86_64-linux-gnu/13/../../../../x86_64-linux-gnu/lib -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc-cross/x86_64-linux-gnu/13/crtendS.o /usr/lib/gcc-cross/x86_64-linux-gnu/13/../../../../x86_64-linux-gnu/lib/../lib/crtn.o -O6 -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,libProgressBar.so.0 -o .libs/libProgressBar.so.0.1.2 libtool: link: (cd ".libs" && rm -f "libProgressBar.so.0" && ln -s "libProgressBar.so.0.1.2" "libProgressBar.so.0") libtool: link: (cd ".libs" && rm -f "libProgressBar.so" && ln -s "libProgressBar.so.0.1.2" "libProgressBar.so") libtool: link: x86_64-linux-gnu-ar cr .libs/libProgressBar.a progressBar.o libtool: link: x86_64-linux-gnu-ranlib .libs/libProgressBar.a libtool: link: ( cd ".libs" && rm -f "libProgressBar.la" && ln -s "../libProgressBar.la" "libProgressBar.la" ) /bin/bash ../libtool --tag=CXX --mode=link x86_64-linux-gnu-g++ -O6 -Wall --pedantic --ansi -lProgressBar -Wl,-z,relro -Wl,-z,now -o testProgressBar testPB.o libProgressBar.la libtool: link: x86_64-linux-gnu-g++ -O6 -Wall --pedantic --ansi -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testProgressBar testPB.o /<>/src/libProgressBar-1.2.0/libProgressBar/.libs/libProgressBar.so ./.libs/libProgressBar.so make[5]: Leaving directory '/<>/src/libProgressBar-1.2.0/libProgressBar' make[4]: Leaving directory '/<>/src/libProgressBar-1.2.0/libProgressBar' make[4]: Entering directory '/<>/src/libProgressBar-1.2.0' cp "libProgressBar.pc" "libProgressBar-1.2.0.pc" make[4]: Leaving directory '/<>/src/libProgressBar-1.2.0' make[3]: Leaving directory '/<>/src/libProgressBar-1.2.0' make[3]: Entering directory '/<>/src' x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../config -I/<> -I/<>/src/libProgressBar-1.2.0/ -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o buildTables.o buildTables.cpp In file included from ./readsReader.h:109, from ./gkArrays.h:115, from buildTables.cpp:111: ./kseq/kseq.h:169:14: warning: ‘int kseq_read(kseq_t*)’ defined but not used [-Wunused-function] 169 | static int kseq_read(kseq_t *seq) \ | ^~~~~~~~~ ./kseq/kseq.h:227:3: note: in expansion of macro ‘__KSEQ_READ’ 227 | __KSEQ_READ | ^~~~~~~~~~~ ./readsReader.h:111:1: note: in expansion of macro ‘KSEQ_INIT’ 111 | KSEQ_INIT(gzFile, gzread) | ^~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../config -I/<> -I/<>/src/libProgressBar-1.2.0/ -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o gkArrays.lo gkArrays.cpp libtool: compile: x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../config -I/<> -I/<>/src/libProgressBar-1.2.0/ -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c gkArrays.cpp -fPIC -DPIC -o .libs/gkArrays.o In file included from readsReader.h:109, from gkArrays.h:115, from gkArrays.cpp:113: kseq/kseq.h:169:14: warning: ‘int kseq_read(kseq_t*)’ defined but not used [-Wunused-function] 169 | static int kseq_read(kseq_t *seq) \ | ^~~~~~~~~ kseq/kseq.h:227:3: note: in expansion of macro ‘__KSEQ_READ’ 227 | __KSEQ_READ | ^~~~~~~~~~~ readsReader.h:111:1: note: in expansion of macro ‘KSEQ_INIT’ 111 | KSEQ_INIT(gzFile, gzread) | ^~~~~~~~~ gkArrays.cpp: In member function ‘char* gkarrays::gkArrays::getTagFactor(uint, uint, uint)’: gkArrays.cpp:454:14: warning: ‘char* __builtin_strncpy(char*, const char*, long unsigned int)’ output may be truncated copying 4 bytes from a string of length 4 [-Wstringop-truncation] 454 | strncpy(&final_dna[previous_length], dna, 4); | ^ gkArrays.cpp:460:14: warning: ‘char* __builtin_strncpy(char*, const char*, long unsigned int)’ output may be truncated copying between 0 and 3 bytes from a string of length 4 [-Wstringop-truncation] 460 | strncpy(&final_dna[previous_length], dna, (p+fact_length+readPos)%4); | ^ gkArrays.cpp: In member function ‘char* gkarrays::gkArrays::getTag(uint)’: gkArrays.cpp:425:14: warning: ‘char* __builtin_strncpy(char*, const char*, long unsigned int)’ output may be truncated copying 4 bytes from a string of length 4 [-Wstringop-truncation] 425 | strncpy(&final_dna[previous_length], dna, 4); | ^ gkArrays.cpp:430:14: warning: ‘char* __builtin_strncpy(char*, const char*, long unsigned int)’ output may be truncated copying between 0 and 3 bytes from a string of length 4 [-Wstringop-truncation] 430 | strncpy(&final_dna[previous_length], dna, nextReadPos%4); | ^ libtool: compile: x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../config -I/<> -I/<>/src/libProgressBar-1.2.0/ -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c gkArrays.cpp -o gkArrays.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../config -I/<> -I/<>/src/libProgressBar-1.2.0/ -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o solArray.lo solArray.cpp libtool: compile: x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../config -I/<> -I/<>/src/libProgressBar-1.2.0/ -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c solArray.cpp -fPIC -DPIC -o .libs/solArray.o libtool: compile: x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../config -I/<> -I/<>/src/libProgressBar-1.2.0/ -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c solArray.cpp -o solArray.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../config -I/<> -I/<>/src/libProgressBar-1.2.0/ -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o utils.lo utils.cpp libtool: compile: x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../config -I/<> -I/<>/src/libProgressBar-1.2.0/ -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c utils.cpp -fPIC -DPIC -o .libs/utils.o libtool: compile: x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../config -I/<> -I/<>/src/libProgressBar-1.2.0/ -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c utils.cpp -o utils.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../config -I/<> -I/<>/src/libProgressBar-1.2.0/ -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o gkArraysBuilder.lo gkArraysBuilder.cpp libtool: compile: x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../config -I/<> -I/<>/src/libProgressBar-1.2.0/ -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c gkArraysBuilder.cpp -fPIC -DPIC -o .libs/gkArraysBuilder.o In file included from readsReader.h:109, from gkArrays.h:115, from gkArraysBuilder.h:105, from gkArraysBuilder.cpp:103: kseq/kseq.h:169:14: warning: ‘int kseq_read(kseq_t*)’ defined but not used [-Wunused-function] 169 | static int kseq_read(kseq_t *seq) \ | ^~~~~~~~~ kseq/kseq.h:227:3: note: in expansion of macro ‘__KSEQ_READ’ 227 | __KSEQ_READ | ^~~~~~~~~~~ readsReader.h:111:1: note: in expansion of macro ‘KSEQ_INIT’ 111 | KSEQ_INIT(gzFile, gzread) | ^~~~~~~~~ libtool: compile: x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../config -I/<> -I/<>/src/libProgressBar-1.2.0/ -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c gkArraysBuilder.cpp -o gkArraysBuilder.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../config -I/<> -I/<>/src/libProgressBar-1.2.0/ -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o gkSABuilder.lo gkSABuilder.cpp libtool: compile: x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../config -I/<> -I/<>/src/libProgressBar-1.2.0/ -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c gkSABuilder.cpp -fPIC -DPIC -o .libs/gkSABuilder.o gkSABuilder.cpp: In function ‘int64_t gkarrays::partition(SolArray*, SolArray*, uintSA, uintSA, uintSA)’: gkSABuilder.cpp:340:24: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] 340 | while(i <= end && values->get(i) < pivotv||((pivotv==values->get(i)) &&(pivotp>sa->get(i)))); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ./readsReader.h:109, from ./gkArrays.h:115, from ./gkSABuilder.h:108, from gkSABuilder.cpp:104: ./readsReader.h: At global scope: ./kseq/kseq.h:169:14: warning: ‘int kseq_read(kseq_t*)’ defined but not used [-Wunused-function] 169 | static int kseq_read(kseq_t *seq) \ | ^~~~~~~~~ ./kseq/kseq.h:227:3: note: in expansion of macro ‘__KSEQ_READ’ 227 | __KSEQ_READ | ^~~~~~~~~~~ ./readsReader.h:111:1: note: in expansion of macro ‘KSEQ_INIT’ 111 | KSEQ_INIT(gzFile, gzread) | ^~~~~~~~~ libtool: compile: x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../config -I/<> -I/<>/src/libProgressBar-1.2.0/ -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c gkSABuilder.cpp -o gkSABuilder.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../config -I/<> -I/<>/src/libProgressBar-1.2.0/ -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o gkCFPSBuilder.lo gkCFPSBuilder.cpp libtool: compile: x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../config -I/<> -I/<>/src/libProgressBar-1.2.0/ -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c gkCFPSBuilder.cpp -fPIC -DPIC -o .libs/gkCFPSBuilder.o In file included from readsReader.h:109, from gkArrays.h:115, from gkCFPSBuilder.cpp:110: kseq/kseq.h:169:14: warning: ‘int kseq_read(kseq_t*)’ defined but not used [-Wunused-function] 169 | static int kseq_read(kseq_t *seq) \ | ^~~~~~~~~ kseq/kseq.h:227:3: note: in expansion of macro ‘__KSEQ_READ’ 227 | __KSEQ_READ | ^~~~~~~~~~~ readsReader.h:111:1: note: in expansion of macro ‘KSEQ_INIT’ 111 | KSEQ_INIT(gzFile, gzread) | ^~~~~~~~~ libtool: compile: x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../config -I/<> -I/<>/src/libProgressBar-1.2.0/ -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c gkCFPSBuilder.cpp -o gkCFPSBuilder.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../config -I/<> -I/<>/src/libProgressBar-1.2.0/ -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o gkIFABuilder.lo gkIFABuilder.cpp libtool: compile: x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../config -I/<> -I/<>/src/libProgressBar-1.2.0/ -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c gkIFABuilder.cpp -fPIC -DPIC -o .libs/gkIFABuilder.o In file included from ./readsReader.h:109, from ./gkArrays.h:115, from ./gkIFABuilder.h:107, from gkIFABuilder.cpp:105: ./kseq/kseq.h:169:14: warning: ‘int kseq_read(kseq_t*)’ defined but not used [-Wunused-function] 169 | static int kseq_read(kseq_t *seq) \ | ^~~~~~~~~ ./kseq/kseq.h:227:3: note: in expansion of macro ‘__KSEQ_READ’ 227 | __KSEQ_READ | ^~~~~~~~~~~ ./readsReader.h:111:1: note: in expansion of macro ‘KSEQ_INIT’ 111 | KSEQ_INIT(gzFile, gzread) | ^~~~~~~~~ libtool: compile: x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../config -I/<> -I/<>/src/libProgressBar-1.2.0/ -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c gkIFABuilder.cpp -o gkIFABuilder.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../config -I/<> -I/<>/src/libProgressBar-1.2.0/ -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o readsReader.lo readsReader.cpp libtool: compile: x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../config -I/<> -I/<>/src/libProgressBar-1.2.0/ -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c readsReader.cpp -fPIC -DPIC -o .libs/readsReader.o libtool: compile: x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../config -I/<> -I/<>/src/libProgressBar-1.2.0/ -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c readsReader.cpp -o readsReader.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../config -I/<> -I/<>/src/libProgressBar-1.2.0/ -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o largebinvect.lo largebinvect.cxx libtool: compile: x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../config -I/<> -I/<>/src/libProgressBar-1.2.0/ -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c largebinvect.cxx -fPIC -DPIC -o .libs/largebinvect.o libtool: compile: x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../config -I/<> -I/<>/src/libProgressBar-1.2.0/ -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c largebinvect.cxx -o largebinvect.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../config -I/<> -I/<>/src/libProgressBar-1.2.0/ -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o bitvector.lo bitvector.cxx libtool: compile: x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../config -I/<> -I/<>/src/libProgressBar-1.2.0/ -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c bitvector.cxx -fPIC -DPIC -o .libs/bitvector.o libtool: compile: x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../config -I/<> -I/<>/src/libProgressBar-1.2.0/ -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c bitvector.cxx -o bitvector.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../config -I/<> -I/<>/src/libProgressBar-1.2.0/ -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o rank9b.lo `test -f 'sux/rank9b.cpp' || echo './'`sux/rank9b.cpp libtool: compile: x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../config -I/<> -I/<>/src/libProgressBar-1.2.0/ -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c sux/rank9b.cpp -fPIC -DPIC -o .libs/rank9b.o sux/rank9b.cpp: In member function ‘uint64_t rank9b::rank(uint64_t)’: sux/rank9b.cpp:144:100: warning: suggest parentheses around ‘-’ inside ‘>>’ [-Wparentheses] 144 | return counts[ block ] + ( counts[ block + 1 ] >> ( offset + ( offset >> sizeof offset * 8 - 4 & 0x8 ) ) * 9 & 0x1FF ) + count( bits[ word ] & ( ( 1ULL << k % 64 ) - 1 ) ); | ~~~~~~~~~~~~~~~~~~^~~ sux/rank9b.cpp: In member function ‘uint64_t rank9b::select(uint64_t)’: sux/rank9b.cpp:207:88: warning: suggest parentheses around ‘-’ in operand of ‘&’ [-Wparentheses] 207 | const uint64_t rank_in_word = rank_in_block - ( subcounts >> ( offset_in_block - 1 & 7 ) * 9 & 0x1FF ); | ~~~~~~~~~~~~~~~~^~~ libtool: compile: x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../config -I/<> -I/<>/src/libProgressBar-1.2.0/ -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c sux/rank9b.cpp -o rank9b.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=link x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -version-info 2:0:1 -lpthread -L/<>/src/libProgressBar-1.2.0/libProgressBar/.libs -lProgressBar -Wl,-z,relro -Wl,-z,now -o libGkArrays.la -rpath /usr/lib/x86_64-linux-gnu gkArrays.lo solArray.lo utils.lo gkArraysBuilder.lo gkSABuilder.lo gkCFPSBuilder.lo gkIFABuilder.lo readsReader.lo largebinvect.lo bitvector.lo rank9b.lo -lpthread -lz libtool: link: x86_64-linux-gnu-g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc-cross/x86_64-linux-gnu/13/../../../../x86_64-linux-gnu/lib/../lib/crti.o /usr/lib/gcc-cross/x86_64-linux-gnu/13/crtbeginS.o .libs/gkArrays.o .libs/solArray.o .libs/utils.o .libs/gkArraysBuilder.o .libs/gkSABuilder.o .libs/gkCFPSBuilder.o .libs/gkIFABuilder.o .libs/readsReader.o .libs/largebinvect.o .libs/bitvector.o .libs/rank9b.o -Wl,-rpath -Wl,/<>/src/libProgressBar-1.2.0/libProgressBar/.libs -L/<>/src/libProgressBar-1.2.0/libProgressBar/.libs /<>/src/libProgressBar-1.2.0/libProgressBar/.libs/libProgressBar.so -lpthread -lz -L/usr/lib/gcc-cross/x86_64-linux-gnu/13 -L/usr/lib/gcc-cross/x86_64-linux-gnu/13/../../../../x86_64-linux-gnu/lib/../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc-cross/x86_64-linux-gnu/13/../../../../x86_64-linux-gnu/lib -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc-cross/x86_64-linux-gnu/13/crtendS.o /usr/lib/gcc-cross/x86_64-linux-gnu/13/../../../../x86_64-linux-gnu/lib/../lib/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,libGkArrays.so.1 -o .libs/libGkArrays.so.1.1.0 libtool: link: (cd ".libs" && rm -f "libGkArrays.so.1" && ln -s "libGkArrays.so.1.1.0" "libGkArrays.so.1") libtool: link: (cd ".libs" && rm -f "libGkArrays.so" && ln -s "libGkArrays.so.1.1.0" "libGkArrays.so") libtool: link: x86_64-linux-gnu-ar cr .libs/libGkArrays.a gkArrays.o solArray.o utils.o gkArraysBuilder.o gkSABuilder.o gkCFPSBuilder.o gkIFABuilder.o readsReader.o largebinvect.o bitvector.o rank9b.o libtool: link: x86_64-linux-gnu-ranlib .libs/libGkArrays.a libtool: link: ( cd ".libs" && rm -f "libGkArrays.la" && ln -s "../libGkArrays.la" "libGkArrays.la" ) /bin/bash ../libtool --tag=CXX --mode=link x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -lGkArrays -lpthread -L/<>/src/libProgressBar-1.2.0/libProgressBar/.libs -lProgressBar -Wl,-z,relro -Wl,-z,now -o buildTables buildTables.o libGkArrays.la -lpthread -lz libtool: link: x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/buildTables buildTables.o /<>/src/.libs/libGkArrays.so -L/<>/src/libProgressBar-1.2.0/libProgressBar/.libs /<>/src/libProgressBar-1.2.0/libProgressBar/.libs/libProgressBar.so ./.libs/libGkArrays.so -lpthread -lz make[3]: Leaving directory '/<>/src' make[2]: Leaving directory '/<>/src' Making all in tests make[2]: Entering directory '/<>/tests' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/<>/tests' make[2]: Entering directory '/<>' cp "libGkArrays.pc" "libGkArrays-2.1.0.pc" make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' dh: command-omitted: The call to "dh_auto_test -a" was omitted due to "DEB_BUILD_OPTIONS=nocheck" create-stamp debian/debhelper-build-stamp dh_prep -a dh_auto_install -a make -j1 install DESTDIR=/<>/libgkarrays-2.1.0\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/<>' Making install in src make[2]: Entering directory '/<>/src' Making install in kseq make[3]: Entering directory '/<>/src/kseq' make[4]: Entering directory '/<>/src/kseq' make[4]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/<>/debian/tmp/usr/include/libGkArrays-2.1.0/kseq' /usr/bin/install -c -m 644 kseq.h '/<>/debian/tmp/usr/include/libGkArrays-2.1.0/kseq' make[4]: Leaving directory '/<>/src/kseq' make[3]: Leaving directory '/<>/src/kseq' Making install in sux make[3]: Entering directory '/<>/src/sux' make[4]: Entering directory '/<>/src/sux' make[4]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/<>/debian/tmp/usr/include/libGkArrays-2.1.0/sux' /usr/bin/install -c -m 644 macros.h popcount.h rank9b.h '/<>/debian/tmp/usr/include/libGkArrays-2.1.0/sux' make[4]: Leaving directory '/<>/src/sux' make[3]: Leaving directory '/<>/src/sux' Making install in libProgressBar-1.2.0 make[3]: Entering directory '/<>/src/libProgressBar-1.2.0' Making install in libProgressBar make[4]: Entering directory '/<>/src/libProgressBar-1.2.0/libProgressBar' make[5]: Entering directory '/<>/src/libProgressBar-1.2.0/libProgressBar' /usr/bin/mkdir -p '/<>/debian/tmp/usr/lib/x86_64-linux-gnu' /bin/bash ../libtool --mode=install /usr/bin/install -c libProgressBar.la '/<>/debian/tmp/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/libProgressBar.so.0.1.2 /<>/debian/tmp/usr/lib/x86_64-linux-gnu/libProgressBar.so.0.1.2 libtool: install: (cd /<>/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libProgressBar.so.0.1.2 libProgressBar.so.0 || { rm -f libProgressBar.so.0 && ln -s libProgressBar.so.0.1.2 libProgressBar.so.0; }; }) libtool: install: (cd /<>/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libProgressBar.so.0.1.2 libProgressBar.so || { rm -f libProgressBar.so && ln -s libProgressBar.so.0.1.2 libProgressBar.so; }; }) libtool: install: /usr/bin/install -c .libs/libProgressBar.lai /<>/debian/tmp/usr/lib/x86_64-linux-gnu/libProgressBar.la libtool: install: /usr/bin/install -c .libs/libProgressBar.a /<>/debian/tmp/usr/lib/x86_64-linux-gnu/libProgressBar.a libtool: install: chmod 644 /<>/debian/tmp/usr/lib/x86_64-linux-gnu/libProgressBar.a libtool: install: x86_64-linux-gnu-ranlib /<>/debian/tmp/usr/lib/x86_64-linux-gnu/libProgressBar.a libtool: warning: remember to run 'libtool --finish /usr/lib/x86_64-linux-gnu' /usr/bin/mkdir -p '/<>/debian/tmp/usr/lib/x86_64-linux-gnu/libProgressBar-1.2.0/include' /usr/bin/install -c -m 644 config.h '/<>/debian/tmp/usr/lib/x86_64-linux-gnu/libProgressBar-1.2.0/include' /usr/bin/mkdir -p '/<>/debian/tmp/usr/include/libProgressBar-1.2.0' /usr/bin/install -c -m 644 progressBar.h '/<>/debian/tmp/usr/include/libProgressBar-1.2.0' make install-data-hook make[6]: Entering directory '/<>/src/libProgressBar-1.2.0/libProgressBar' ln -s -f libProgressBar-1.2.0 /<>/debian/tmp/usr/include/libProgressBar make[6]: Leaving directory '/<>/src/libProgressBar-1.2.0/libProgressBar' make[5]: Leaving directory '/<>/src/libProgressBar-1.2.0/libProgressBar' make[4]: Leaving directory '/<>/src/libProgressBar-1.2.0/libProgressBar' make[4]: Entering directory '/<>/src/libProgressBar-1.2.0' make[5]: Entering directory '/<>/src/libProgressBar-1.2.0' make[5]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/<>/debian/tmp/usr/lib/x86_64-linux-gnu/pkgconfig' /usr/bin/install -c -m 644 libProgressBar-1.2.0.pc '/<>/debian/tmp/usr/lib/x86_64-linux-gnu/pkgconfig' make install-data-hook make[6]: Entering directory '/<>/src/libProgressBar-1.2.0' ln -s -f libProgressBar-1.2.0.pc /<>/debian/tmp/usr/lib/x86_64-linux-gnu/pkgconfig/libProgressBar.pc make[6]: Leaving directory '/<>/src/libProgressBar-1.2.0' make[5]: Leaving directory '/<>/src/libProgressBar-1.2.0' make[4]: Leaving directory '/<>/src/libProgressBar-1.2.0' make[3]: Leaving directory '/<>/src/libProgressBar-1.2.0' make[3]: Entering directory '/<>/src' make[4]: Entering directory '/<>/src' /usr/bin/mkdir -p '/<>/debian/tmp/usr/lib/x86_64-linux-gnu' /bin/bash ../libtool --mode=install /usr/bin/install -c libGkArrays.la '/<>/debian/tmp/usr/lib/x86_64-linux-gnu' libtool: warning: relinking 'libGkArrays.la' libtool: install: (cd /<>/src; /bin/bash "/<>/libtool" --tag CXX --mode=relink x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -version-info 2:0:1 -lpthread -L/<>/src/libProgressBar-1.2.0/libProgressBar/.libs -lProgressBar -Wl,-z,relro -Wl,-z,now -o libGkArrays.la -rpath /usr/lib/x86_64-linux-gnu gkArrays.lo solArray.lo utils.lo gkArraysBuilder.lo gkSABuilder.lo gkCFPSBuilder.lo gkIFABuilder.lo readsReader.lo largebinvect.lo bitvector.lo rank9b.lo -lpthread -lz -inst-prefix-dir /<>/debian/tmp) libtool: relink: x86_64-linux-gnu-g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc-cross/x86_64-linux-gnu/13/../../../../x86_64-linux-gnu/lib/../lib/crti.o /usr/lib/gcc-cross/x86_64-linux-gnu/13/crtbeginS.o .libs/gkArrays.o .libs/solArray.o .libs/utils.o .libs/gkArraysBuilder.o .libs/gkSABuilder.o .libs/gkCFPSBuilder.o .libs/gkIFABuilder.o .libs/readsReader.o .libs/largebinvect.o .libs/bitvector.o .libs/rank9b.o -L/<>/src/libProgressBar-1.2.0/libProgressBar/.libs -L/<>/debian/tmp/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lProgressBar -lpthread -lz -L/usr/lib/gcc-cross/x86_64-linux-gnu/13 -L/usr/lib/gcc-cross/x86_64-linux-gnu/13/../../../../x86_64-linux-gnu/lib/../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc-cross/x86_64-linux-gnu/13/../../../../x86_64-linux-gnu/lib -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc-cross/x86_64-linux-gnu/13/crtendS.o /usr/lib/gcc-cross/x86_64-linux-gnu/13/../../../../x86_64-linux-gnu/lib/../lib/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,libGkArrays.so.1 -o .libs/libGkArrays.so.1.1.0 libtool: install: /usr/bin/install -c .libs/libGkArrays.so.1.1.0T /<>/debian/tmp/usr/lib/x86_64-linux-gnu/libGkArrays.so.1.1.0 libtool: install: (cd /<>/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libGkArrays.so.1.1.0 libGkArrays.so.1 || { rm -f libGkArrays.so.1 && ln -s libGkArrays.so.1.1.0 libGkArrays.so.1; }; }) libtool: install: (cd /<>/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libGkArrays.so.1.1.0 libGkArrays.so || { rm -f libGkArrays.so && ln -s libGkArrays.so.1.1.0 libGkArrays.so; }; }) libtool: install: /usr/bin/install -c .libs/libGkArrays.lai /<>/debian/tmp/usr/lib/x86_64-linux-gnu/libGkArrays.la libtool: install: /usr/bin/install -c .libs/libGkArrays.a /<>/debian/tmp/usr/lib/x86_64-linux-gnu/libGkArrays.a libtool: install: chmod 644 /<>/debian/tmp/usr/lib/x86_64-linux-gnu/libGkArrays.a libtool: install: x86_64-linux-gnu-ranlib /<>/debian/tmp/usr/lib/x86_64-linux-gnu/libGkArrays.a libtool: warning: remember to run 'libtool --finish /usr/lib/x86_64-linux-gnu' /usr/bin/mkdir -p '/<>/debian/tmp/usr/include/libGkArrays-2.1.0' /usr/bin/install -c -m 644 gkArrays.h solArray.h gkArraysTypes.h gkArraysBuilder.h gkSABuilder.h gkCFPSBuilder.h gkIFABuilder.h readsReader.h bitvector.hxx largebinvect.hxx bitvector.cxx largebinvect.cxx binvect.hxx '/<>/debian/tmp/usr/include/libGkArrays-2.1.0' /usr/bin/mkdir -p '/<>/debian/tmp/usr/lib/x86_64-linux-gnu/libGkArrays-2.1.0/include' /usr/bin/install -c -m 644 /<>/config/config.h '/<>/debian/tmp/usr/lib/x86_64-linux-gnu/libGkArrays-2.1.0/include' make install-data-hook make[5]: Entering directory '/<>/src' ln -s -f libGkArrays-2.1.0 /<>/debian/tmp/usr/include/libGkArrays make[5]: Leaving directory '/<>/src' make[4]: Leaving directory '/<>/src' make[3]: Leaving directory '/<>/src' make[2]: Leaving directory '/<>/src' Making install in tests make[2]: Entering directory '/<>/tests' make[3]: Entering directory '/<>/tests' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/<>/tests' make[2]: Leaving directory '/<>/tests' make[2]: Entering directory '/<>' make[3]: Entering directory '/<>' make[3]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/<>/debian/tmp/usr/lib/x86_64-linux-gnu/pkgconfig' /usr/bin/install -c -m 644 libGkArrays-2.1.0.pc '/<>/debian/tmp/usr/lib/x86_64-linux-gnu/pkgconfig' make install-data-hook make[4]: Entering directory '/<>' ln -s -f libGkArrays-2.1.0.pc /<>/debian/tmp/usr/lib/x86_64-linux-gnu/pkgconfig/libGkArrays.pc make[4]: Leaving directory '/<>' make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' debian/rules override_dh_install make[1]: Entering directory '/<>' dh_install d-shlibmove --commit \ --t64 \ --multiarch \ --devunversioned \ --exclude-la \ --override s/libProgressBar0-dev// \ --movedev debian/tmp/usr/include usr \ --movedev debian/tmp/usr/lib/x86_64-linux-gnu/pkgconfig usr/lib/x86_64-linux-gnu \ debian/tmp/usr/lib/x86_64-linux-gnu/libGkArrays.so Library package automatic movement utility --> zlib1g-dev package exists. set -e install -d -m 755 debian/libgkarrays-dev/usr/lib/x86_64-linux-gnu install -d -m 755 debian/libgkarrays1t64/usr/lib/x86_64-linux-gnu mv debian/tmp/usr/lib/x86_64-linux-gnu/libGkArrays.a debian/libgkarrays-dev/usr/lib/x86_64-linux-gnu mv debian/tmp/usr/lib/x86_64-linux-gnu/libGkArrays.so debian/libgkarrays-dev/usr/lib/x86_64-linux-gnu mv /<>/debian/tmp/usr/lib/x86_64-linux-gnu/libGkArrays.so.1 debian/libgkarrays1t64/usr/lib/x86_64-linux-gnu mv /<>/debian/tmp/usr/lib/x86_64-linux-gnu/libGkArrays.so.1.1.0 debian/libgkarrays1t64/usr/lib/x86_64-linux-gnu PKGDEV=libgkarrays-dev PKGSHL=libgkarrays1t64 install -d -m 755 debian/libgkarrays-dev/usr mv debian/tmp/usr/include debian/libgkarrays-dev/usr install -d -m 755 debian/libgkarrays-dev/usr/lib/x86_64-linux-gnu mv debian/tmp/usr/lib/x86_64-linux-gnu/pkgconfig debian/libgkarrays-dev/usr/lib/x86_64-linux-gnu # now move libProgressBar manually dh_install -p libgkarrays1t64 usr/lib/x86_64-linux-gnu/libProgressBar.so.0* usr/lib/x86_64-linux-gnu chmod -x debian/*/usr/lib/x86_64-linux-gnu/libProgressBar.so.0.* dh_install -p libgkarrays-dev usr/lib/x86_64-linux-gnu/libProgressBar.so usr/lib/x86_64-linux-gnu dh_install -p libgkarrays-dev usr/lib/x86_64-linux-gnu/libProgressBar.a usr/lib/x86_64-linux-gnu dh_install -p libgkarrays-dev usr/lib/x86_64-linux-gnu/libGkArrays-2.1.0/include/* usr/include/libGkArrays-2.1.0 dh_install -p libgkarrays-dev usr/lib/x86_64-linux-gnu/libProgressBar-1.2.0/include/* usr/include/libProgressBar-1.2.0 find debian/tmp -name "lib*.la" -delete make[1]: Leaving directory '/<>' dh_installdocs -a dh_installchangelogs -a dh_lintian -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_dwz -a dwz: debian/libgkarrays1t64/usr/lib/x86_64-linux-gnu/libProgressBar.so.0.1.2: .debug_info section not present dwz: Too few files for multifile optimization dh_dwz: warning: No dwz multifile created, but not explicitly requested either so ignoring it. dh_dwz: warning: Common issues include no debug information at all (missing -g) and dh_dwz: warning: compressed debug information (#931891). dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dpkg-gencontrol: warning: Depends field of package libgkarrays-dev: substitution variable ${shlibs:Depends} used, but is not defined dpkg-gencontrol: warning: package libgkarrays-dev: substitution variable ${devlibs:Depends} unused, but is defined dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'libgkarrays1t64' in '../libgkarrays1t64_2.1.0+dfsg-4.2_amd64.deb'. dpkg-deb: building package 'libgkarrays1t64-dbgsym' in '../libgkarrays1t64-dbgsym_2.1.0+dfsg-4.2_amd64.deb'. dpkg-deb: building package 'libgkarrays-dev' in '../libgkarrays-dev_2.1.0+dfsg-4.2_amd64.deb'. dpkg-genbuildinfo --build=any -O../libgkarrays_2.1.0+dfsg-4.2_amd64.buildinfo dpkg-genchanges --build=any -O../libgkarrays_2.1.0+dfsg-4.2_amd64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2024-03-04T13:20:33Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ libgkarrays_2.1.0+dfsg-4.2_amd64.changes: ----------------------------------------- Format: 1.8 Date: Wed, 28 Feb 2024 18:55:49 +0000 Source: libgkarrays Binary: libgkarrays-dev libgkarrays1t64 libgkarrays1t64-dbgsym Built-For-Profiles: cross nocheck Architecture: amd64 Version: 2.1.0+dfsg-4.2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Benjamin Drung Description: libgkarrays-dev - library to query large collection of NGS sequences (development) libgkarrays1t64 - library to query large collection of NGS sequences Closes: 1062316 Changes: libgkarrays (2.1.0+dfsg-4.2) unstable; urgency=medium . * Non-maintainer upload. * Rename libraries for 64-bit time_t transition. Closes: #1062316 Checksums-Sha1: 4a37a0ef583db7e99f603c8c390babb4d85c1f33 85236 libgkarrays-dev_2.1.0+dfsg-4.2_amd64.deb 20cab32c566a02e28a615672e6cb98887d5d14ae 188340 libgkarrays1t64-dbgsym_2.1.0+dfsg-4.2_amd64.deb 2b837f69058bd67ba2f3ffdccc3a7addda458f38 57468 libgkarrays1t64_2.1.0+dfsg-4.2_amd64.deb a47a32f6dac167d3b67c97122040f9aa2173b2ad 5966 libgkarrays_2.1.0+dfsg-4.2_amd64.buildinfo Checksums-Sha256: 133b308b24c667784702f66cf25bd8a6786973bbc65a22f54a27a155b6d503f7 85236 libgkarrays-dev_2.1.0+dfsg-4.2_amd64.deb 20e171168272786933d15a5a56a1b6475dca17389ab50d433ae7bbe459ec9d30 188340 libgkarrays1t64-dbgsym_2.1.0+dfsg-4.2_amd64.deb fdd7c6eae25b19b171dc11fb3806b189ddd28cae08d93b5f1a4f415f606f9e85 57468 libgkarrays1t64_2.1.0+dfsg-4.2_amd64.deb 9436550b329b7e0adf8bc9595194bbe19bea775a2f9590ddbd004768fc22285c 5966 libgkarrays_2.1.0+dfsg-4.2_amd64.buildinfo Files: 9db66c1a28800502e7decdbb7a519da5 85236 libdevel optional libgkarrays-dev_2.1.0+dfsg-4.2_amd64.deb 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20cab32c566a02e28a615672e6cb98887d5d14ae 188340 libgkarrays1t64-dbgsym_2.1.0+dfsg-4.2_amd64.deb 2b837f69058bd67ba2f3ffdccc3a7addda458f38 57468 libgkarrays1t64_2.1.0+dfsg-4.2_amd64.deb Checksums-Sha256: 133b308b24c667784702f66cf25bd8a6786973bbc65a22f54a27a155b6d503f7 85236 libgkarrays-dev_2.1.0+dfsg-4.2_amd64.deb 20e171168272786933d15a5a56a1b6475dca17389ab50d433ae7bbe459ec9d30 188340 libgkarrays1t64-dbgsym_2.1.0+dfsg-4.2_amd64.deb fdd7c6eae25b19b171dc11fb3806b189ddd28cae08d93b5f1a4f415f606f9e85 57468 libgkarrays1t64_2.1.0+dfsg-4.2_amd64.deb Build-Origin: Debian Build-Architecture: arm64 Build-Date: Mon, 04 Mar 2024 13:20:31 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs Installed-Build-Depends: apt (= 2.7.13+b1), autoconf (= 2.71-3), automake (= 1:1.16.5-1.3), autopoint (= 0.21-14), autotools-dev (= 20220109.1), base-files (= 13), base-passwd (= 3.6.3), bash (= 5.2.21-2), binutils (= 2.42-3), binutils-aarch64-linux-gnu (= 2.42-3), binutils-common (= 2.42-3), bsdextrautils (= 2.39.3-9), bsdutils (= 1:2.39.3-9), build-essential (= 12.10), bzip2 (= 1.0.8-5+b2), coreutils (= 9.4-3), cpp (= 4:13.2.0-7), cpp-13 (= 13.2.0-18), cpp-13-aarch64-linux-gnu (= 13.2.0-18), cpp-aarch64-linux-gnu (= 4:13.2.0-7), d-shlibs (= 0.106), dash (= 0.5.12-6), debconf (= 1.5.86), debhelper (= 13.14.1), debian-archive-keyring (= 2023.4), debianutils (= 5.17), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.13.1-1), diffutils (= 1:3.10-1), dpkg (= 1.22.5), dpkg-dev (= 1.22.5), dwz (= 0.15-1), file (= 1:5.45-3), findutils (= 4.9.0-5), g++ (= 4:13.2.0-7), g++-13 (= 13.2.0-18), g++-13-aarch64-linux-gnu (= 13.2.0-18), g++-aarch64-linux-gnu (= 4:13.2.0-7), gcc (= 4:13.2.0-7), gcc-13 (= 13.2.0-18), gcc-13-aarch64-linux-gnu (= 13.2.0-18), gcc-13-base (= 13.2.0-18), gcc-14-base (= 14-20240303-1), gcc-aarch64-linux-gnu (= 4:13.2.0-7), gettext (= 0.21-14+b1), gettext-base (= 0.21-14+b1), gpgv (= 2.2.40-1.1+b1), grep (= 3.11-4), groff-base (= 1.23.0-3), gzip (= 1.12-1), hostname (= 3.23+nmu2), init-system-helpers (= 1.66), intltool-debian (= 0.35.0+20060710.6), libacl1 (= 2.3.2-1), libapt-pkg6.0t64 (= 2.7.13+b1), libarchive-zip-perl (= 1.68-1), libasan8 (= 14-20240303-1), libatomic1 (= 14-20240303-1), libattr1 (= 1:2.5.2-1), libaudit-common (= 1:3.1.2-2.1), libaudit1 (= 1:3.1.2-2.1), libbinutils (= 2.42-3), libblkid1 (= 2.39.3-9), libbz2-1.0 (= 1.0.8-5+b2), libc-bin (= 2.37-15.1), libc-dev-bin (= 2.37-15.1), libc6 (= 2.37-15.1), libc6-dev (= 2.37-15.1), libcap-ng0 (= 0.8.4-2), libcap2 (= 1:2.66-5), libcc1-0 (= 14-20240303-1), libcrypt-dev (= 1:4.4.36-4), libcrypt1 (= 1:4.4.36-4), libctf-nobfd0 (= 2.42-3), libctf0 (= 2.42-3), libdb5.3 (= 5.3.28+dfsg2-4+b1), libdebconfclient0 (= 0.271+b1), libdebhelper-perl (= 13.14.1), libdpkg-perl (= 1.22.5), libelf1 (= 0.190-1+b1), libffi8 (= 3.4.6-1), libfile-find-rule-perl (= 0.34-3), libfile-stripnondeterminism-perl (= 1.13.1-1), libgcc-13-dev (= 13.2.0-18), libgcc-s1 (= 14-20240303-1), libgcrypt20 (= 1.10.3-2), libgdbm-compat4 (= 1.23-5+b1), libgdbm6 (= 1.23-5+b1), libgmp10 (= 2:6.3.0+dfsg-2+b1), libgnutls30t64 (= 3.8.3-1.1), libgomp1 (= 14-20240303-1), libgpg-error0 (= 1.47-3), libgprofng0 (= 2.42-3), libhogweed6 (= 3.9.1-2+b1), libhwasan0 (= 14-20240303-1), libicu72 (= 72.1-4+b1), libidn2-0 (= 2.3.7-2), libisl23 (= 0.26-3+b2), libitm1 (= 14-20240303-1), libjansson4 (= 2.14-2+b2), liblsan0 (= 14-20240303-1), liblz4-1 (= 1.9.4-1+b2), liblzma5 (= 5.6.0-0.2), libmagic-mgc (= 1:5.45-3), libmagic1t64 (= 1:5.45-3), libmd0 (= 1.1.0-2), libmount1 (= 2.39.3-9), libmpc3 (= 1.3.1-1+b2), libmpfr6 (= 4.2.1-1+b1), libnettle8 (= 3.9.1-2+b1), libnumber-compare-perl (= 0.03-3), libp11-kit0 (= 0.25.3-4), libpam-modules (= 1.5.3-6), libpam-modules-bin (= 1.5.3-6), libpam-runtime (= 1.5.3-6), libpam0g (= 1.5.3-6), libpcre2-8-0 (= 10.42-4+b1), libperl5.38 (= 5.38.2-3), libpipeline1 (= 1.5.7-1+b2), libquadmath0 (= 14-20240303-1), libseccomp2 (= 2.5.5-1), libselinux1 (= 3.5-2), libsframe1 (= 2.42-3), libsmartcols1 (= 2.39.3-9), libssl3 (= 3.1.5-1), libstdc++-13-dev (= 13.2.0-18), libstdc++6 (= 14-20240303-1), libsub-override-perl (= 0.10-1), libsystemd0 (= 255.4-1), libtasn1-6 (= 4.19.0-3+b2), libtext-glob-perl (= 0.11-3), libtinfo6 (= 6.4+20240113-1), libtool (= 2.4.7-7), libtsan2 (= 14-20240303-1), libubsan1 (= 14-20240303-1), libuchardet0 (= 0.0.8-1+b1), libudev1 (= 255.4-1), libunistring5 (= 1.1-2), libuuid1 (= 2.39.3-9), libxml2 (= 2.9.14+dfsg-1.3+b2), libxxhash0 (= 0.8.2-2+b1), libzstd1 (= 1.5.5+dfsg2-2), linux-libc-dev (= 6.7.7-1), login (= 1:4.13+dfsg1-4), m4 (= 1.4.19-4), make (= 4.3-4.1), man-db (= 2.12.0-3), mawk (= 1.3.4.20240123-1), ncurses-base (= 6.4+20240113-1), ncurses-bin (= 6.4+20240113-1), patch (= 2.7.6-7), perl (= 5.38.2-3), perl-base (= 5.38.2-3), perl-modules-5.38 (= 5.38.2-3), po-debconf (= 1.0.21+nmu1), rpcsvc-proto (= 1.4.3-1), sed (= 4.9-2), sensible-utils (= 0.0.22), sysvinit-utils (= 3.08-7), tar (= 1.35+dfsg-3), usrmerge (= 39), util-linux (= 2.39.3-9), xz-utils (= 5.6.0-0.2), zlib1g (= 1:1.3.dfsg-3.1), zlib1g-dev (= 1:1.3.dfsg-3.1) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="en_GB.UTF-8" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1709146549" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ libgkarrays-dev_2.1.0+dfsg-4.2_amd64.deb ---------------------------------------- new Debian package, version 2.0. size 85236 bytes: control archive=1616 bytes. 970 bytes, 23 lines control 2127 bytes, 27 lines md5sums Package: libgkarrays-dev Source: libgkarrays Version: 2.1.0+dfsg-4.2 Architecture: amd64 Maintainer: Debian Med Packaging Team Installed-Size: 515 Depends: libgkarrays1t64 (= 2.1.0+dfsg-4.2) Section: libdevel Priority: optional Homepage: http://crac.gforge.inria.fr/gkarrays/ Description: library to query large collection of NGS sequences (development) Gk-arrays are provided as a simple-to-use C++ library dedicated to queries on large collection of sequences as produced by high-throughput sequencers (e.g. HiSeq 2000 from Illumina, 454 from Roche). . Gk-arrays index k-mers of reads and allows one to answer different queries on that read collection (e.g. how many reads share this k-mer? where does this k-mer occur in the read collection?). . Gk-arrays consist of a space-efficient alternative to hash tables while being similar in terms of query times. . This is the development library for libgkarrays. drwxr-xr-x root/root 0 2024-02-28 18:55 ./ drwxr-xr-x root/root 0 2024-02-28 18:55 ./usr/ drwxr-xr-x root/root 0 2024-02-28 18:55 ./usr/include/ lrwxrwxrwx root/root 0 2024-02-28 18:55 ./usr/include/libGkArrays -> libGkArrays-2.1.0 drwxr-xr-x root/root 0 2024-02-28 18:55 ./usr/include/libGkArrays-2.1.0/ -rw-r--r-- root/root 8288 2024-02-28 18:55 ./usr/include/libGkArrays-2.1.0/binvect.hxx -rw-r--r-- root/root 19920 2024-02-28 18:55 ./usr/include/libGkArrays-2.1.0/bitvector.cxx -rw-r--r-- root/root 9852 2024-02-28 18:55 ./usr/include/libGkArrays-2.1.0/bitvector.hxx -rw-r--r-- root/root 4842 2024-02-28 18:55 ./usr/include/libGkArrays-2.1.0/config.h -rw-r--r-- root/root 20802 2024-02-28 18:55 ./usr/include/libGkArrays-2.1.0/gkArrays.h -rw-r--r-- root/root 8854 2024-02-28 18:55 ./usr/include/libGkArrays-2.1.0/gkArraysBuilder.h -rw-r--r-- root/root 8559 2024-02-28 18:55 ./usr/include/libGkArrays-2.1.0/gkArraysTypes.h -rw-r--r-- root/root 9026 2024-02-28 18:55 ./usr/include/libGkArrays-2.1.0/gkCFPSBuilder.h -rw-r--r-- root/root 9283 2024-02-28 18:55 ./usr/include/libGkArrays-2.1.0/gkIFABuilder.h -rw-r--r-- root/root 12439 2024-02-28 18:55 ./usr/include/libGkArrays-2.1.0/gkSABuilder.h drwxr-xr-x root/root 0 2024-02-28 18:55 ./usr/include/libGkArrays-2.1.0/kseq/ -rw-r--r-- root/root 12765 2024-02-28 18:55 ./usr/include/libGkArrays-2.1.0/kseq/kseq.h -rw-r--r-- root/root 49375 2024-02-28 18:55 ./usr/include/libGkArrays-2.1.0/largebinvect.cxx -rw-r--r-- root/root 14569 2024-02-28 18:55 ./usr/include/libGkArrays-2.1.0/largebinvect.hxx -rw-r--r-- root/root 16651 2024-02-28 18:55 ./usr/include/libGkArrays-2.1.0/readsReader.h -rw-r--r-- root/root 12355 2024-02-28 18:55 ./usr/include/libGkArrays-2.1.0/solArray.h drwxr-xr-x root/root 0 2024-02-28 18:55 ./usr/include/libGkArrays-2.1.0/sux/ -rw-r--r-- root/root 1661 2024-02-28 18:55 ./usr/include/libGkArrays-2.1.0/sux/macros.h -rw-r--r-- root/root 605 2024-02-28 18:55 ./usr/include/libGkArrays-2.1.0/sux/popcount.h -rw-r--r-- root/root 3115 2024-02-28 18:55 ./usr/include/libGkArrays-2.1.0/sux/rank9b.h lrwxrwxrwx root/root 0 2024-02-28 18:55 ./usr/include/libProgressBar -> libProgressBar-1.2.0 drwxr-xr-x root/root 0 2024-02-28 18:55 ./usr/include/libProgressBar-1.2.0/ -rw-r--r-- root/root 4084 2024-02-28 18:55 ./usr/include/libProgressBar-1.2.0/config.h -rw-r--r-- root/root 8886 2024-02-28 18:55 ./usr/include/libProgressBar-1.2.0/progressBar.h drwxr-xr-x root/root 0 2024-02-28 18:55 ./usr/lib/ drwxr-xr-x root/root 0 2024-02-28 18:55 ./usr/lib/x86_64-linux-gnu/ -rw-r--r-- root/root 203760 2024-02-28 18:55 ./usr/lib/x86_64-linux-gnu/libGkArrays.a lrwxrwxrwx root/root 0 2024-02-28 18:55 ./usr/lib/x86_64-linux-gnu/libGkArrays.so -> libGkArrays.so.1.1.0 -rw-r--r-- root/root 18312 2024-02-28 18:55 ./usr/lib/x86_64-linux-gnu/libProgressBar.a lrwxrwxrwx root/root 0 2024-02-28 18:55 ./usr/lib/x86_64-linux-gnu/libProgressBar.so -> libProgressBar.so.0.1.2 drwxr-xr-x root/root 0 2024-02-28 18:55 ./usr/lib/x86_64-linux-gnu/pkgconfig/ -rw-r--r-- root/root 244 2024-02-28 18:55 ./usr/lib/x86_64-linux-gnu/pkgconfig/libGkArrays-2.1.0.pc lrwxrwxrwx root/root 0 2024-02-28 18:55 ./usr/lib/x86_64-linux-gnu/pkgconfig/libGkArrays.pc -> libGkArrays-2.1.0.pc -rw-r--r-- root/root 258 2024-02-28 18:55 ./usr/lib/x86_64-linux-gnu/pkgconfig/libProgressBar-1.2.0.pc lrwxrwxrwx root/root 0 2024-02-28 18:55 ./usr/lib/x86_64-linux-gnu/pkgconfig/libProgressBar.pc -> libProgressBar-1.2.0.pc drwxr-xr-x root/root 0 2024-02-28 18:55 ./usr/share/ drwxr-xr-x root/root 0 2024-02-28 18:55 ./usr/share/doc/ drwxr-xr-x root/root 0 2024-02-28 18:55 ./usr/share/doc/libgkarrays-dev/ -rw-r--r-- root/root 507 2024-02-28 18:55 ./usr/share/doc/libgkarrays-dev/changelog.Debian.gz -rw-r--r-- root/root 5768 2013-12-11 14:49 ./usr/share/doc/libgkarrays-dev/changelog.gz -rw-r--r-- root/root 26908 2020-11-19 09:41 ./usr/share/doc/libgkarrays-dev/copyright libgkarrays1t64-dbgsym_2.1.0+dfsg-4.2_amd64.deb ----------------------------------------------- new Debian package, version 2.0. size 188340 bytes: control archive=608 bytes. 453 bytes, 12 lines control 212 bytes, 2 lines md5sums Package: libgkarrays1t64-dbgsym Source: libgkarrays Version: 2.1.0+dfsg-4.2 Auto-Built-Package: debug-symbols Architecture: amd64 Maintainer: Debian Med Packaging Team Installed-Size: 219 Depends: libgkarrays1t64 (= 2.1.0+dfsg-4.2) Section: debug Priority: optional Description: debug symbols for libgkarrays1t64 Build-Ids: 7f4937ba6f65abbf5bdc9eddf4b8e7b29146e0d7 dda85e7490e045f59f77b8c73a76d5844b888e01 drwxr-xr-x root/root 0 2024-02-28 18:55 ./ drwxr-xr-x root/root 0 2024-02-28 18:55 ./usr/ drwxr-xr-x root/root 0 2024-02-28 18:55 ./usr/lib/ drwxr-xr-x root/root 0 2024-02-28 18:55 ./usr/lib/debug/ drwxr-xr-x root/root 0 2024-02-28 18:55 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2024-02-28 18:55 ./usr/lib/debug/.build-id/7f/ -rw-r--r-- root/root 204680 2024-02-28 18:55 ./usr/lib/debug/.build-id/7f/4937ba6f65abbf5bdc9eddf4b8e7b29146e0d7.debug drwxr-xr-x root/root 0 2024-02-28 18:55 ./usr/lib/debug/.build-id/dd/ -rw-r--r-- root/root 7504 2024-02-28 18:55 ./usr/lib/debug/.build-id/dd/a85e7490e045f59f77b8c73a76d5844b888e01.debug drwxr-xr-x root/root 0 2024-02-28 18:55 ./usr/share/ drwxr-xr-x root/root 0 2024-02-28 18:55 ./usr/share/doc/ lrwxrwxrwx root/root 0 2024-02-28 18:55 ./usr/share/doc/libgkarrays1t64-dbgsym -> libgkarrays1t64 libgkarrays1t64_2.1.0+dfsg-4.2_amd64.deb ---------------------------------------- new Debian package, version 2.0. size 57468 bytes: control archive=1188 bytes. 1052 bytes, 24 lines control 476 bytes, 6 lines md5sums 95 bytes, 2 lines shlibs 68 bytes, 2 lines triggers Package: libgkarrays1t64 Source: libgkarrays Version: 2.1.0+dfsg-4.2 Architecture: amd64 Maintainer: Debian Med Packaging Team Installed-Size: 174 Depends: libc6 (>= 2.34), libgcc-s1 (>= 3.0), libstdc++6 (>= 13.1), zlib1g (>= 1:1.1.4) Conflicts: libgkarrays1 (<< 2.1.0+dfsg-4.2) Replaces: libgkarrays1 Provides: libgkarrays1 (= 2.1.0+dfsg-4.2) Section: libs Priority: optional Homepage: http://crac.gforge.inria.fr/gkarrays/ Description: library to query large collection of NGS sequences Gk-arrays are provided as a simple-to-use C++ library dedicated to queries on large collection of sequences as produced by high-throughput sequencers (e.g. HiSeq 2000 from Illumina, 454 from Roche). . Gk-arrays index k-mers of reads and allows one to answer different queries on that read collection (e.g. how many reads share this k-mer? where does this k-mer occur in the read collection?). . Gk-arrays consist of a space-efficient alternative to hash tables while being similar in terms of query times. drwxr-xr-x root/root 0 2024-02-28 18:55 ./ drwxr-xr-x root/root 0 2024-02-28 18:55 ./usr/ drwxr-xr-x root/root 0 2024-02-28 18:55 ./usr/lib/ drwxr-xr-x root/root 0 2024-02-28 18:55 ./usr/lib/x86_64-linux-gnu/ lrwxrwxrwx root/root 0 2024-02-28 18:55 ./usr/lib/x86_64-linux-gnu/libGkArrays.so.1 -> libGkArrays.so.1.1.0 -rw-r--r-- root/root 104496 2024-02-28 18:55 ./usr/lib/x86_64-linux-gnu/libGkArrays.so.1.1.0 lrwxrwxrwx root/root 0 2024-02-28 18:55 ./usr/lib/x86_64-linux-gnu/libProgressBar.so.0 -> libProgressBar.so.0.1.2 -rw-r--r-- root/root 22456 2024-02-28 18:55 ./usr/lib/x86_64-linux-gnu/libProgressBar.so.0.1.2 drwxr-xr-x root/root 0 2024-02-28 18:55 ./usr/share/ drwxr-xr-x root/root 0 2024-02-28 18:55 ./usr/share/doc/ drwxr-xr-x root/root 0 2024-02-28 18:55 ./usr/share/doc/libgkarrays1t64/ -rw-r--r-- root/root 507 2024-02-28 18:55 ./usr/share/doc/libgkarrays1t64/changelog.Debian.gz -rw-r--r-- root/root 5768 2013-12-11 14:49 ./usr/share/doc/libgkarrays1t64/changelog.gz -rw-r--r-- root/root 26908 2020-11-19 09:41 ./usr/share/doc/libgkarrays1t64/copyright drwxr-xr-x root/root 0 2024-02-28 18:55 ./usr/share/lintian/ drwxr-xr-x root/root 0 2024-02-28 18:55 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 64 2024-02-28 18:55 ./usr/share/lintian/overrides/libgkarrays1t64 lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:arm64 Filtered Build-Depends: lintian:arm64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/apt_archive/sbuild-build-depends-lintian-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [615 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [1351 B] Get:5 copy:/<>/apt_archive ./ Packages [1430 B] Fetched 3396 B in 0s (192 kB/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Execute external solver... The following additional packages will be installed: ca-certificates diffstat gpg gpgconf iso-codes libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libberkeleydb-perl libcapture-tiny-perl libcgi-pm-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdata-validate-ip-perl libdata-validate-uri-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libencode-locale-perl libexception-class-perl libfile-basedir-perl libfile-listing-perl libfont-ttf-perl libhtml-form-perl libhtml-html5-entities-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tokeparser-simple-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libimport-into-perl libio-html-perl libio-interactive-perl libio-socket-ssl-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-someutils-perl liblist-utilsby-perl liblwp-mediatypes-perl liblwp-protocol-https-perl liblz1 liblzo2-2 libmarkdown2 libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnet-http-perl libnet-ipv6addr-perl libnet-netmask-perl libnet-ssleay-perl libnetaddr-ip-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl libreadline8 libregexp-wildcards-perl librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libsqlite3-0 libssl3t64 libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libsyntax-keyword-try-perl libterm-readkey-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libwww-mechanize-perl libwww-perl libwww-robotrules-perl libxs-parse-keyword-perl libyaml-0-2 libyaml-libyaml-perl lintian lzop netbase openssl patchutils perl-openssl-defaults plzip readline-common t1utils unzip Suggested packages: isoquery libxml-parser-perl libdata-dump-perl libcrypt-ssleay-perl libscalar-number-perl libbareword-filehandles-perl libindirect-perl libmultidimensional-perl libbusiness-isbn-perl libregexp-ipv6-perl libauthen-ntlm-perl binutils-multiarch libtext-template-perl readline-doc zip Recommended packages: gnupg libcgi-fast-perl libhtml-format-perl libio-compress-brotli-perl liblist-someutils-xs-perl libfreezethaw-perl libmath-base85-perl libsocket6-perl libpackage-stash-xs-perl libxstring-perl libdata-dump-perl libhttp-daemon-perl libmailtools-perl The following packages will be REMOVED: libssl3* The following NEW packages will be installed: ca-certificates diffstat gpg gpgconf iso-codes libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libberkeleydb-perl libcapture-tiny-perl libcgi-pm-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdata-validate-ip-perl libdata-validate-uri-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libencode-locale-perl libexception-class-perl libfile-basedir-perl libfile-listing-perl libfont-ttf-perl libhtml-form-perl libhtml-html5-entities-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tokeparser-simple-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libimport-into-perl libio-html-perl libio-interactive-perl libio-socket-ssl-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-someutils-perl liblist-utilsby-perl liblwp-mediatypes-perl liblwp-protocol-https-perl liblz1 liblzo2-2 libmarkdown2 libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnet-http-perl libnet-ipv6addr-perl libnet-netmask-perl libnet-ssleay-perl libnetaddr-ip-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl libreadline8 libregexp-wildcards-perl librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libsqlite3-0 libssl3t64 libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libsyntax-keyword-try-perl libterm-readkey-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libwww-mechanize-perl libwww-perl libwww-robotrules-perl libxs-parse-keyword-perl libyaml-0-2 libyaml-libyaml-perl lintian lzop netbase openssl patchutils perl-openssl-defaults plzip readline-common sbuild-build-depends-lintian-dummy:amd64 t1utils unzip 0 upgraded, 127 newly installed, 1 to remove and 0 not upgraded. Need to get 15.1 MB of archives. After this operation, 53.3 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-lintian-dummy 0.invalid.0 [844 B] Get:2 http://mirror.einval.org/debian unstable/main arm64 libssl3t64 arm64 3.1.5-1.1 [1839 kB] Get:3 http://mirror.einval.org/debian unstable/main arm64 netbase all 6.4 [12.8 kB] Get:4 http://mirror.einval.org/debian unstable/main arm64 readline-common all 8.2-3.1 [69.2 kB] Get:5 http://mirror.einval.org/debian unstable/main arm64 openssl arm64 3.1.5-1.1 [1208 kB] Get:6 http://mirror.einval.org/debian unstable/main arm64 ca-certificates all 20240203 [158 kB] Get:7 http://mirror.einval.org/debian unstable/main arm64 diffstat arm64 1.66-1 [31.6 kB] Get:8 http://mirror.einval.org/debian unstable/main arm64 libassuan0 arm64 2.5.6-1 [47.3 kB] Get:9 http://mirror.einval.org/debian unstable/main arm64 libreadline8 arm64 8.2-3+b1 [157 kB] Get:10 http://mirror.einval.org/debian unstable/main arm64 gpgconf arm64 2.2.40-1.1+b1 [558 kB] Get:11 http://mirror.einval.org/debian unstable/main arm64 libsqlite3-0 arm64 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arm64 libhtml-html5-entities-perl all 0.004-3 [21.0 kB] Get:70 http://mirror.einval.org/debian unstable/main arm64 libhtml-tree-perl all 5.07-3 [211 kB] Get:71 http://mirror.einval.org/debian unstable/main arm64 libhttp-cookies-perl all 6.11-1 [19.1 kB] Get:72 http://mirror.einval.org/debian unstable/main arm64 libhttp-negotiate-perl all 6.01-2 [13.1 kB] Get:73 http://mirror.einval.org/debian unstable/main arm64 perl-openssl-defaults arm64 7+b1 [7924 B] Get:74 http://mirror.einval.org/debian unstable/main arm64 libnet-ssleay-perl arm64 1.94-1 [327 kB] Get:75 http://mirror.einval.org/debian unstable/main arm64 libio-socket-ssl-perl all 2.085-1 [218 kB] Get:76 http://mirror.einval.org/debian unstable/main arm64 libnet-http-perl all 6.23-1 [23.9 kB] Get:77 http://mirror.einval.org/debian unstable/main arm64 liblwp-protocol-https-perl all 6.13-1 [10.7 kB] Get:78 http://mirror.einval.org/debian unstable/main arm64 libwww-robotrules-perl all 6.02-1 [12.9 kB] Get:79 http://mirror.einval.org/debian unstable/main arm64 libwww-perl all 6.76-1 [183 kB] Get:80 http://mirror.einval.org/debian unstable/main arm64 libhtml-tokeparser-simple-perl all 3.16-4 [39.1 kB] Get:81 http://mirror.einval.org/debian unstable/main arm64 libimport-into-perl all 1.002005-2 [11.3 kB] Get:82 http://mirror.einval.org/debian unstable/main arm64 libio-interactive-perl all 1.025-1 [11.4 kB] Get:83 http://mirror.einval.org/debian unstable/main arm64 libipc-run3-perl all 0.049-1 [31.5 kB] Get:84 http://mirror.einval.org/debian unstable/main arm64 libjson-maybexs-perl all 1.004005-1 [12.9 kB] Get:85 http://mirror.einval.org/debian unstable/main arm64 liblist-compare-perl all 0.55-2 [65.7 kB] Get:86 http://mirror.einval.org/debian unstable/main arm64 liblist-someutils-perl all 0.59-1 [37.1 kB] Get:87 http://mirror.einval.org/debian unstable/main arm64 liblist-utilsby-perl all 0.12-2 [15.5 kB] Get:88 http://mirror.einval.org/debian unstable/main arm64 liblz1 arm64 1.14-1 [37.7 kB] Get:89 http://mirror.einval.org/debian unstable/main arm64 liblzo2-2 arm64 2.10-2+b1 [49.2 kB] Get:90 http://mirror.einval.org/debian unstable/main arm64 libmarkdown2 arm64 2.2.7-2+b1 [33.2 kB] Get:91 http://mirror.einval.org/debian unstable/main arm64 libmldbm-perl all 2.05-4 [16.8 kB] Get:92 http://mirror.einval.org/debian unstable/main arm64 librole-tiny-perl all 2.002004-1 [21.4 kB] Get:93 http://mirror.einval.org/debian unstable/main arm64 libsub-quote-perl all 2.006008-1 [21.8 kB] Get:94 http://mirror.einval.org/debian unstable/main arm64 libmoo-perl all 2.005005-1 [58.0 kB] Get:95 http://mirror.einval.org/debian unstable/main arm64 libstrictures-perl all 2.000006-1 [18.6 kB] Get:96 http://mirror.einval.org/debian unstable/main arm64 libmoox-aliases-perl all 0.001006-2 [7156 B] Get:97 http://mirror.einval.org/debian unstable/main arm64 libmouse-perl arm64 2.5.10-1+b4 [141 kB] Get:98 http://mirror.einval.org/debian unstable/main arm64 libpackage-stash-perl all 0.40-1 [22.0 kB] Get:99 http://mirror.einval.org/debian unstable/main arm64 libsub-identify-perl arm64 0.14-3+b1 [11.2 kB] Get:100 http://mirror.einval.org/debian unstable/main arm64 libsub-name-perl arm64 0.27-1+b1 [12.3 kB] Get:101 http://mirror.einval.org/debian unstable/main arm64 libnamespace-clean-perl all 0.27-2 [17.8 kB] Get:102 http://mirror.einval.org/debian unstable/main arm64 libpath-tiny-perl all 0.144-1 [56.4 kB] Get:103 http://mirror.einval.org/debian unstable/main arm64 libperlio-gzip-perl arm64 0.20-1+b2 [17.4 kB] Get:104 http://mirror.einval.org/debian unstable/main arm64 libperlio-utf8-strict-perl arm64 0.010-1+b1 [11.4 kB] Get:105 http://mirror.einval.org/debian unstable/main arm64 libproc-processtable-perl arm64 0.636-1+b1 [41.6 kB] Get:106 http://mirror.einval.org/debian unstable/main arm64 libregexp-wildcards-perl all 1.05-3 [14.1 kB] Get:107 http://mirror.einval.org/debian unstable/main arm64 libsereal-decoder-perl arm64 5.004+ds-1+b1 [95.7 kB] Get:108 http://mirror.einval.org/debian unstable/main arm64 libsereal-encoder-perl arm64 5.004+ds-1+b1 [97.7 kB] Get:109 http://mirror.einval.org/debian unstable/main arm64 libsort-versions-perl all 1.62-3 [8928 B] Get:110 http://mirror.einval.org/debian unstable/main arm64 libxs-parse-keyword-perl arm64 0.39-1+b1 [56.2 kB] Get:111 http://mirror.einval.org/debian unstable/main arm64 libsyntax-keyword-try-perl arm64 0.29-1+b1 [26.8 kB] Get:112 http://mirror.einval.org/debian unstable/main arm64 libterm-readkey-perl arm64 2.38-2+b2 [24.4 kB] Get:113 http://mirror.einval.org/debian unstable/main arm64 libtext-levenshteinxs-perl arm64 0.03-5+b2 [8656 B] Get:114 http://mirror.einval.org/debian unstable/main arm64 libtext-markdown-discount-perl arm64 0.16-1+b1 [13.1 kB] Get:115 http://mirror.einval.org/debian unstable/main arm64 libtext-xslate-perl arm64 3.5.9-1+b3 [171 kB] Get:116 http://mirror.einval.org/debian unstable/main arm64 libtime-duration-perl all 1.21-2 [13.1 kB] Get:117 http://mirror.einval.org/debian unstable/main arm64 libtime-moment-perl arm64 0.44-2+b2 [72.2 kB] Get:118 http://mirror.einval.org/debian unstable/main arm64 libunicode-utf8-perl arm64 0.62-2+b1 [19.9 kB] Get:119 http://mirror.einval.org/debian unstable/main arm64 libwww-mechanize-perl all 2.18-1 [114 kB] Get:120 http://mirror.einval.org/debian unstable/main arm64 libyaml-0-2 arm64 0.2.5-1 [50.4 kB] Get:121 http://mirror.einval.org/debian unstable/main arm64 libyaml-libyaml-perl arm64 0.89+ds-1 [33.0 kB] Get:122 http://mirror.einval.org/debian unstable/main arm64 plzip arm64 1.11-1 [58.8 kB] Get:123 http://mirror.einval.org/debian unstable/main arm64 lzop arm64 1.04-2 [82.8 kB] Get:124 http://mirror.einval.org/debian unstable/main arm64 patchutils arm64 0.4.2-1 [73.5 kB] Get:125 http://mirror.einval.org/debian unstable/main arm64 t1utils arm64 1.41-4 [59.8 kB] Get:126 http://mirror.einval.org/debian unstable/main arm64 unzip arm64 6.0-28 [157 kB] Get:127 http://mirror.einval.org/debian unstable/main arm64 lintian all 2.117.0 [1052 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 15.1 MB in 0s (55.4 MB/s) dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested: coreutils depends on libssl3 (>= 3.0.0). (Reading database ... 17181 files and directories currently installed.) Removing libssl3:arm64 (3.1.5-1) ... Selecting previously unselected package libssl3t64:arm64. (Reading database ... 17168 files and directories currently installed.) Preparing to unpack .../libssl3t64_3.1.5-1.1_arm64.deb ... Unpacking libssl3t64:arm64 (3.1.5-1.1) ... Setting up libssl3t64:arm64 (3.1.5-1.1) ... Selecting previously unselected package netbase. (Reading database ... 17183 files and directories currently installed.) Preparing to unpack .../000-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package readline-common. Preparing to unpack .../001-readline-common_8.2-3.1_all.deb ... Unpacking readline-common (8.2-3.1) ... Selecting previously unselected package openssl. Preparing to unpack .../002-openssl_3.1.5-1.1_arm64.deb ... Unpacking openssl (3.1.5-1.1) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../003-ca-certificates_20240203_all.deb ... Unpacking ca-certificates (20240203) ... Selecting previously unselected package diffstat. Preparing to unpack .../004-diffstat_1.66-1_arm64.deb ... Unpacking diffstat (1.66-1) ... Selecting previously unselected package libassuan0:arm64. Preparing to unpack .../005-libassuan0_2.5.6-1_arm64.deb ... Unpacking libassuan0:arm64 (2.5.6-1) ... Selecting previously unselected package libreadline8:arm64. Preparing to unpack .../006-libreadline8_8.2-3+b1_arm64.deb ... Unpacking libreadline8:arm64 (8.2-3+b1) ... Selecting previously unselected package gpgconf. Preparing to unpack .../007-gpgconf_2.2.40-1.1+b1_arm64.deb ... Unpacking gpgconf (2.2.40-1.1+b1) ... Selecting previously unselected package libsqlite3-0:arm64. Preparing to unpack .../008-libsqlite3-0_3.45.1-1_arm64.deb ... Unpacking libsqlite3-0:arm64 (3.45.1-1) ... Selecting previously unselected package gpg. Preparing to unpack .../009-gpg_2.2.40-1.1+b1_arm64.deb ... Unpacking gpg (2.2.40-1.1+b1) ... Selecting previously unselected package iso-codes. Preparing to unpack .../010-iso-codes_4.16.0-1_all.deb ... Unpacking iso-codes (4.16.0-1) ... Selecting previously unselected package libaliased-perl. Preparing to unpack .../011-libaliased-perl_0.34-3_all.deb ... Unpacking libaliased-perl (0.34-3) ... Selecting previously unselected package libapt-pkg-perl. Preparing to unpack .../012-libapt-pkg-perl_0.1.40+b4_arm64.deb ... Unpacking libapt-pkg-perl (0.1.40+b4) ... Selecting previously unselected package libb-hooks-op-check-perl:arm64. Preparing to unpack .../013-libb-hooks-op-check-perl_0.22-2+b2_arm64.deb ... Unpacking libb-hooks-op-check-perl:arm64 (0.22-2+b2) ... Selecting previously unselected package libdynaloader-functions-perl. Preparing to unpack .../014-libdynaloader-functions-perl_0.003-3_all.deb ... Unpacking libdynaloader-functions-perl (0.003-3) ... Selecting previously unselected package libdevel-callchecker-perl:arm64. Preparing to unpack .../015-libdevel-callchecker-perl_0.008-2+b1_arm64.deb ... Unpacking libdevel-callchecker-perl:arm64 (0.008-2+b1) ... Selecting previously unselected package libparams-classify-perl:arm64. Preparing to unpack .../016-libparams-classify-perl_0.015-2+b2_arm64.deb ... Unpacking libparams-classify-perl:arm64 (0.015-2+b2) ... Selecting previously unselected package libmodule-runtime-perl. Preparing to unpack .../017-libmodule-runtime-perl_0.016-2_all.deb ... Unpacking libmodule-runtime-perl (0.016-2) ... Selecting previously unselected package libtry-tiny-perl. Preparing to unpack .../018-libtry-tiny-perl_0.31-2_all.deb ... Unpacking libtry-tiny-perl (0.31-2) ... Selecting previously unselected package libmodule-implementation-perl. Preparing to unpack .../019-libmodule-implementation-perl_0.09-2_all.deb ... Unpacking libmodule-implementation-perl (0.09-2) ... Selecting previously unselected package libsub-exporter-progressive-perl. Preparing to unpack .../020-libsub-exporter-progressive-perl_0.001013-3_all.deb ... Unpacking libsub-exporter-progressive-perl (0.001013-3) ... Selecting previously unselected package libvariable-magic-perl. Preparing to unpack .../021-libvariable-magic-perl_0.63-1+b2_arm64.deb ... Unpacking libvariable-magic-perl (0.63-1+b2) ... Selecting previously unselected package libb-hooks-endofscope-perl. Preparing to unpack .../022-libb-hooks-endofscope-perl_0.28-1_all.deb ... Unpacking libb-hooks-endofscope-perl (0.28-1) ... Selecting previously unselected package libberkeleydb-perl:arm64. Preparing to unpack .../023-libberkeleydb-perl_0.64-2+b2_arm64.deb ... Unpacking libberkeleydb-perl:arm64 (0.64-2+b2) ... Selecting previously unselected package libcapture-tiny-perl. Preparing to unpack .../024-libcapture-tiny-perl_0.48-2_all.deb ... Unpacking libcapture-tiny-perl (0.48-2) ... Selecting previously unselected package libhtml-tagset-perl. Preparing to unpack .../025-libhtml-tagset-perl_3.20-6_all.deb ... Unpacking libhtml-tagset-perl (3.20-6) ... Selecting previously unselected package liburi-perl. Preparing to unpack .../026-liburi-perl_5.27-1_all.deb ... Unpacking liburi-perl (5.27-1) ... Selecting previously unselected package libhtml-parser-perl:arm64. Preparing to unpack .../027-libhtml-parser-perl_3.81-1+b1_arm64.deb ... Unpacking libhtml-parser-perl:arm64 (3.81-1+b1) ... Selecting previously unselected package libcgi-pm-perl. Preparing to unpack .../028-libcgi-pm-perl_4.62-1_all.deb ... Unpacking libcgi-pm-perl (4.62-1) ... Selecting previously unselected package libclass-data-inheritable-perl. Preparing to unpack .../029-libclass-data-inheritable-perl_0.08-3_all.deb ... Unpacking libclass-data-inheritable-perl (0.08-3) ... Selecting previously unselected package libclass-method-modifiers-perl. Preparing to unpack .../030-libclass-method-modifiers-perl_2.15-1_all.deb ... Unpacking libclass-method-modifiers-perl (2.15-1) ... Selecting previously unselected package libclass-xsaccessor-perl. Preparing to unpack .../031-libclass-xsaccessor-perl_1.19-4+b2_arm64.deb ... Unpacking libclass-xsaccessor-perl (1.19-4+b2) ... Selecting previously unselected package libclone-perl:arm64. Preparing to unpack .../032-libclone-perl_0.46-1+b1_arm64.deb ... Unpacking libclone-perl:arm64 (0.46-1+b1) ... Selecting previously unselected package libconfig-tiny-perl. Preparing to unpack .../033-libconfig-tiny-perl_2.30-1_all.deb ... Unpacking libconfig-tiny-perl (2.30-1) ... Selecting previously unselected package libparams-util-perl. Preparing to unpack .../034-libparams-util-perl_1.102-2+b2_arm64.deb ... Unpacking libparams-util-perl (1.102-2+b2) ... Selecting previously unselected package libsub-install-perl. Preparing to unpack .../035-libsub-install-perl_0.929-1_all.deb ... Unpacking libsub-install-perl (0.929-1) ... Selecting previously unselected package libdata-optlist-perl. Preparing to unpack .../036-libdata-optlist-perl_0.114-1_all.deb ... Unpacking libdata-optlist-perl (0.114-1) ... Selecting previously unselected package libsub-exporter-perl. Preparing to unpack .../037-libsub-exporter-perl_0.990-1_all.deb ... Unpacking libsub-exporter-perl (0.990-1) ... Selecting previously unselected package libconst-fast-perl. Preparing to unpack .../038-libconst-fast-perl_0.014-2_all.deb ... Unpacking libconst-fast-perl (0.014-2) ... Selecting previously unselected package libcpanel-json-xs-perl:arm64. Preparing to unpack .../039-libcpanel-json-xs-perl_4.37-1+b1_arm64.deb ... Unpacking libcpanel-json-xs-perl:arm64 (4.37-1+b1) ... Selecting previously unselected package libdevel-stacktrace-perl. Preparing to unpack .../040-libdevel-stacktrace-perl_2.0500-1_all.deb ... Unpacking libdevel-stacktrace-perl (2.0500-1) ... Selecting previously unselected package libexception-class-perl. Preparing to unpack .../041-libexception-class-perl_1.45-1_all.deb ... Unpacking libexception-class-perl (1.45-1) ... Selecting previously unselected package libiterator-perl. Preparing to unpack .../042-libiterator-perl_0.03+ds1-2_all.deb ... Unpacking libiterator-perl (0.03+ds1-2) ... Selecting previously unselected package libiterator-util-perl. Preparing to unpack .../043-libiterator-util-perl_0.02+ds1-2_all.deb ... Unpacking libiterator-util-perl (0.02+ds1-2) ... Selecting previously unselected package libdata-dpath-perl. Preparing to unpack .../044-libdata-dpath-perl_0.59-1_all.deb ... Unpacking libdata-dpath-perl (0.59-1) ... Selecting previously unselected package libdata-messagepack-perl. Preparing to unpack .../045-libdata-messagepack-perl_1.02-1+b2_arm64.deb ... Unpacking libdata-messagepack-perl (1.02-1+b2) ... Selecting previously unselected package libnet-domain-tld-perl. Preparing to unpack .../046-libnet-domain-tld-perl_1.75-3_all.deb ... Unpacking libnet-domain-tld-perl (1.75-3) ... Selecting previously unselected package libdata-validate-domain-perl. Preparing to unpack .../047-libdata-validate-domain-perl_0.10-1.1_all.deb ... Unpacking libdata-validate-domain-perl (0.10-1.1) ... Selecting previously unselected package libnet-ipv6addr-perl. Preparing to unpack .../048-libnet-ipv6addr-perl_1.02-1_all.deb ... Unpacking libnet-ipv6addr-perl (1.02-1) ... Selecting previously unselected package libnet-netmask-perl. Preparing to unpack .../049-libnet-netmask-perl_2.0002-2_all.deb ... Unpacking libnet-netmask-perl (2.0002-2) ... Selecting previously unselected package libnetaddr-ip-perl. Preparing to unpack .../050-libnetaddr-ip-perl_4.079+dfsg-2+b2_arm64.deb ... Unpacking libnetaddr-ip-perl (4.079+dfsg-2+b2) ... Selecting previously unselected package libdata-validate-ip-perl. Preparing to unpack .../051-libdata-validate-ip-perl_0.31-1_all.deb ... Unpacking libdata-validate-ip-perl (0.31-1) ... Selecting previously unselected package libdata-validate-uri-perl. Preparing to unpack .../052-libdata-validate-uri-perl_0.07-2_all.deb ... Unpacking libdata-validate-uri-perl (0.07-2) ... Selecting previously unselected package libdevel-size-perl. Preparing to unpack .../053-libdevel-size-perl_0.83-2+b2_arm64.deb ... Unpacking libdevel-size-perl (0.83-2+b2) ... Selecting previously unselected package libemail-address-xs-perl. Preparing to unpack .../054-libemail-address-xs-perl_1.05-1+b2_arm64.deb ... Unpacking libemail-address-xs-perl (1.05-1+b2) ... Selecting previously unselected package libencode-locale-perl. Preparing to unpack .../055-libencode-locale-perl_1.05-3_all.deb ... Unpacking libencode-locale-perl (1.05-3) ... Selecting previously unselected package libipc-system-simple-perl. Preparing to unpack .../056-libipc-system-simple-perl_1.30-2_all.deb ... Unpacking libipc-system-simple-perl (1.30-2) ... Selecting previously unselected package libfile-basedir-perl. Preparing to unpack .../057-libfile-basedir-perl_0.09-2_all.deb ... Unpacking libfile-basedir-perl (0.09-2) ... Selecting previously unselected package libtimedate-perl. Preparing to unpack .../058-libtimedate-perl_2.3300-2_all.deb ... Unpacking libtimedate-perl (2.3300-2) ... Selecting previously unselected package libhttp-date-perl. Preparing to unpack .../059-libhttp-date-perl_6.06-1_all.deb ... Unpacking libhttp-date-perl (6.06-1) ... Selecting previously unselected package libfile-listing-perl. Preparing to unpack .../060-libfile-listing-perl_6.16-1_all.deb ... Unpacking libfile-listing-perl (6.16-1) ... Selecting previously unselected package libfont-ttf-perl. Preparing to unpack .../061-libfont-ttf-perl_1.06-2_all.deb ... Unpacking libfont-ttf-perl (1.06-2) ... Selecting previously unselected package libio-html-perl. Preparing to unpack .../062-libio-html-perl_1.004-3_all.deb ... Unpacking libio-html-perl (1.004-3) ... Selecting previously unselected package liblwp-mediatypes-perl. Preparing to unpack .../063-liblwp-mediatypes-perl_6.04-2_all.deb ... Unpacking liblwp-mediatypes-perl (6.04-2) ... Selecting previously unselected package libhttp-message-perl. Preparing to unpack .../064-libhttp-message-perl_6.45-1_all.deb ... Unpacking libhttp-message-perl (6.45-1) ... Selecting previously unselected package libhtml-form-perl. Preparing to unpack .../065-libhtml-form-perl_6.11-1_all.deb ... Unpacking libhtml-form-perl (6.11-1) ... Selecting previously unselected package libhtml-html5-entities-perl. Preparing to unpack .../066-libhtml-html5-entities-perl_0.004-3_all.deb ... Unpacking libhtml-html5-entities-perl (0.004-3) ... Selecting previously unselected package libhtml-tree-perl. Preparing to unpack .../067-libhtml-tree-perl_5.07-3_all.deb ... Unpacking libhtml-tree-perl (5.07-3) ... Selecting previously unselected package libhttp-cookies-perl. Preparing to unpack .../068-libhttp-cookies-perl_6.11-1_all.deb ... Unpacking libhttp-cookies-perl (6.11-1) ... Selecting previously unselected package libhttp-negotiate-perl. Preparing to unpack .../069-libhttp-negotiate-perl_6.01-2_all.deb ... Unpacking libhttp-negotiate-perl (6.01-2) ... Selecting previously unselected package perl-openssl-defaults:arm64. Preparing to unpack .../070-perl-openssl-defaults_7+b1_arm64.deb ... Unpacking perl-openssl-defaults:arm64 (7+b1) ... Selecting previously unselected package libnet-ssleay-perl:arm64. Preparing to unpack .../071-libnet-ssleay-perl_1.94-1_arm64.deb ... Unpacking libnet-ssleay-perl:arm64 (1.94-1) ... Selecting previously unselected package libio-socket-ssl-perl. Preparing to unpack .../072-libio-socket-ssl-perl_2.085-1_all.deb ... Unpacking libio-socket-ssl-perl (2.085-1) ... Selecting previously unselected package libnet-http-perl. Preparing to unpack .../073-libnet-http-perl_6.23-1_all.deb ... Unpacking libnet-http-perl (6.23-1) ... Selecting previously unselected package liblwp-protocol-https-perl. Preparing to unpack .../074-liblwp-protocol-https-perl_6.13-1_all.deb ... Unpacking liblwp-protocol-https-perl (6.13-1) ... Selecting previously unselected package libwww-robotrules-perl. Preparing to unpack .../075-libwww-robotrules-perl_6.02-1_all.deb ... Unpacking libwww-robotrules-perl (6.02-1) ... Selecting previously unselected package libwww-perl. Preparing to unpack .../076-libwww-perl_6.76-1_all.deb ... Unpacking libwww-perl (6.76-1) ... Selecting previously unselected package libhtml-tokeparser-simple-perl. Preparing to unpack .../077-libhtml-tokeparser-simple-perl_3.16-4_all.deb ... Unpacking libhtml-tokeparser-simple-perl (3.16-4) ... Selecting previously unselected package libimport-into-perl. Preparing to unpack .../078-libimport-into-perl_1.002005-2_all.deb ... Unpacking libimport-into-perl (1.002005-2) ... Selecting previously unselected package libio-interactive-perl. Preparing to unpack .../079-libio-interactive-perl_1.025-1_all.deb ... Unpacking libio-interactive-perl (1.025-1) ... Selecting previously unselected package libipc-run3-perl. Preparing to unpack .../080-libipc-run3-perl_0.049-1_all.deb ... Unpacking libipc-run3-perl (0.049-1) ... Selecting previously unselected package libjson-maybexs-perl. Preparing to unpack .../081-libjson-maybexs-perl_1.004005-1_all.deb ... Unpacking libjson-maybexs-perl (1.004005-1) ... Selecting previously unselected package liblist-compare-perl. Preparing to unpack .../082-liblist-compare-perl_0.55-2_all.deb ... Unpacking liblist-compare-perl (0.55-2) ... Selecting previously unselected package liblist-someutils-perl. Preparing to unpack .../083-liblist-someutils-perl_0.59-1_all.deb ... Unpacking liblist-someutils-perl (0.59-1) ... Selecting previously unselected package liblist-utilsby-perl. 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Setting up plzip (1.11-1) ... update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip (lzip) in auto mode update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip-compressor (lzip-compressor) in auto mode update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip-decompressor (lzip-decompressor) in auto mode Setting up libunicode-utf8-perl (0.62-2+b1) ... Setting up libmouse-perl (2.5.10-1+b4) ... Setting up libdata-messagepack-perl (1.02-1+b2) ... Setting up libdynaloader-functions-perl (0.003-3) ... Setting up libclass-method-modifiers-perl (2.15-1) ... Setting up liblist-compare-perl (0.55-2) ... Setting up libclone-perl:arm64 (0.46-1+b1) ... Setting up libyaml-0-2:arm64 (0.2.5-1) ... Setting up libsub-identify-perl (0.14-3+b1) ... Setting up libcpanel-json-xs-perl:arm64 (4.37-1+b1) ... Setting up libhtml-tagset-perl (3.20-6) ... Setting up libdevel-size-perl (0.83-2+b2) ... Setting up unzip (6.0-28) ... 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Setting up libemail-address-xs-perl (1.05-1+b2) ... Setting up libnet-ssleay-perl:arm64 (1.94-1) ... Setting up libhttp-date-perl (6.06-1) ... Setting up libfile-basedir-perl (0.09-2) ... Setting up libfile-listing-perl (6.16-1) ... Setting up libreadline8:arm64 (8.2-3+b1) ... Setting up libnet-http-perl (6.23-1) ... Setting up libtext-markdown-discount-perl (0.16-1+b1) ... Setting up libexception-class-perl (1.45-1) ... Setting up libdevel-callchecker-perl:arm64 (0.008-2+b1) ... Setting up ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 146 added, 0 removed; done. Setting up libdata-validate-uri-perl (0.07-2) ... Setting up libdata-optlist-perl (0.114-1) ... Setting up libwww-robotrules-perl (6.02-1) ... Setting up libhtml-parser-perl:arm64 (3.81-1+b1) ... Setting up gpgconf (2.2.40-1.1+b1) ... Setting up libio-socket-ssl-perl (2.085-1) ... Setting up gpg (2.2.40-1.1+b1) ... Setting up libsub-exporter-perl (0.990-1) ... Setting up libhttp-message-perl (6.45-1) ... Setting up libhtml-form-perl (6.11-1) ... Setting up libiterator-perl (0.03+ds1-2) ... Setting up libhttp-negotiate-perl (6.01-2) ... Setting up libiterator-util-perl (0.02+ds1-2) ... Setting up libhttp-cookies-perl (6.11-1) ... Setting up libhtml-tree-perl (5.07-3) ... Setting up libparams-classify-perl:arm64 (0.015-2+b2) ... Setting up libcgi-pm-perl (4.62-1) ... Setting up libmodule-runtime-perl (0.016-2) ... Setting up libconst-fast-perl (0.014-2) ... Setting up libdata-dpath-perl (0.59-1) ... Setting up libmodule-implementation-perl (0.09-2) ... Setting up libpackage-stash-perl (0.40-1) ... Setting up libimport-into-perl (1.002005-2) ... Setting up libmoo-perl (2.005005-1) ... Setting up liblist-someutils-perl (0.59-1) ... Setting up libmoox-aliases-perl (0.001006-2) ... Setting up libb-hooks-endofscope-perl (0.28-1) ... Setting up libnamespace-clean-perl (0.27-2) ... Setting up libwww-perl (6.76-1) ... Setting up libhtml-tokeparser-simple-perl (3.16-4) ... Setting up libwww-mechanize-perl (2.18-1) ... Setting up liblwp-protocol-https-perl (6.13-1) ... Setting up lintian (2.117.0) ... Setting up sbuild-build-depends-lintian-dummy:amd64 (0.invalid.0) ... Processing triggers for libc-bin (2.37-15.1) ... Processing triggers for man-db (2.12.0-3) ... Not building database; man-db/auto-update is not 'true'. Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Running lintian... I: Lintian run was successful. +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: arm64 Build Profiles: cross nocheck Build Type: any Build-Space: 20548 Build-Time: 120 Distribution: unstable Foreign Architectures: amd64 Host Architecture: amd64 Install-Time: 48 Job: libgkarrays_2.1.0+dfsg-4.2 Lintian: pass Machine Architecture: arm64 Package: libgkarrays Package-Time: 214 Source-Version: 2.1.0+dfsg-4.2 Space: 20548 Status: successful Version: 2.1.0+dfsg-4.2 -------------------------------------------------------------------------------- Finished at 2024-03-04T13:20:33Z Build needed 00:03:34, 20548k disk space