sbuild (Debian sbuild) 0.78.1 (09 February 2019) on mjolnir +==============================================================================+ | libgkarrays 2.1.0+dfsg-4 (i386) Thu, 28 Oct 2021 04:27:44 +0000 | +==============================================================================+ Package: libgkarrays Version: 2.1.0+dfsg-4 Source Version: 2.1.0+dfsg-4 Distribution: unstable Machine Architecture: arm64 Host Architecture: i386 Build Architecture: arm64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/crossqa-sid-d419eb1e-edbc-458a-9244-33e86e6ff833' with '<>' I: NOTICE: Log filtering will replace 'build/libgkarrays-Nj5Ki3/resolver-aBqiUy' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://mirror.einval.org/debian sid InRelease [165 kB] Ign:2 http://mirror.einval.org/debian sid/main Sources.diff/Index Ign:3 http://mirror.einval.org/debian sid/main arm64 Packages.diff/Index Get:2 http://mirror.einval.org/debian sid/main Sources.diff/Index [63.6 kB] Ign:2 http://mirror.einval.org/debian sid/main Sources.diff/Index Ign:3 http://mirror.einval.org/debian sid/main arm64 Packages.diff/Index Get:4 http://mirror.einval.org/debian sid/main i386 Packages [8715 kB] Get:5 http://mirror.einval.org/debian sid/main Sources [9294 kB] Get:6 http://mirror.einval.org/debian sid/main arm64 Packages [8659 kB] Fetched 26.8 MB in 7s (3789 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'libgkarrays' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/libgkarrays.git Please use: git clone https://salsa.debian.org/med-team/libgkarrays.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 111 kB of source archives. Get:1 http://mirror.einval.org/debian sid/main libgkarrays 2.1.0+dfsg-4 (dsc) [2093 B] Get:2 http://mirror.einval.org/debian sid/main libgkarrays 2.1.0+dfsg-4 (tar) [97.9 kB] Get:3 http://mirror.einval.org/debian sid/main libgkarrays 2.1.0+dfsg-4 (diff) [10.9 kB] Fetched 111 kB in 0s (2089 kB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/libgkarrays-Nj5Ki3/libgkarrays-2.1.0+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/libgkarrays-Nj5Ki3' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), d-shlibs, zlib1g-dev, libc-dev, libstdc++-dev, build-essential:arm64, fakeroot:arm64, crossbuild-essential-i386:arm64, libc-dev:i386, libstdc++-dev:i386 Filtered Build-Depends: debhelper-compat (= 13), d-shlibs, zlib1g-dev, libc-dev, libstdc++-dev, build-essential:arm64, fakeroot:arm64, crossbuild-essential-i386:arm64, libc-dev:i386, libstdc++-dev:i386 dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [415 B] Get:5 copy:/<>/apt_archive ./ Packages [505 B] Fetched 1877 B in 0s (43.9 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-i686-linux-gnu bsdextrautils cpp-11-i686-linux-gnu cpp-i686-linux-gnu cross-config crossbuild-essential-i386 d-shlibs debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz file g++-11-i686-linux-gnu g++-i686-linux-gnu gcc-11-base:i386 gcc-11-cross-base gcc-11-i686-linux-gnu gcc-11-i686-linux-gnu-base gcc-i686-linux-gnu gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan6:i386 libasan6-i386-cross libatomic1:i386 libatomic1-i386-cross libc6:i386 libc6-dev:i386 libc6-dev-i386-cross libc6-i386-cross libcom-err2:i386 libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev:i386 libcrypt1:i386 libdebhelper-perl libdebian-dpkgcross-perl libelf1 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-11-dev:i386 libgcc-11-dev-i386-cross libgcc-s1:i386 libgcc-s1-i386-cross libgomp1:i386 libgomp1-i386-cross libgssapi-krb5-2:i386 libicu67 libio-string-perl libitm1:i386 libitm1-i386-cross libk5crypto3:i386 libkeyutils1:i386 libkrb5-3:i386 libkrb5support0:i386 liblocale-gettext-perl libmagic-mgc libmagic1 libnsl-dev:i386 libnsl2:i386 libpipeline1 libquadmath0:i386 libquadmath0-i386-cross libsigsegv2 libssl1.1:i386 libstdc++-11-dev:i386 libstdc++-11-dev-i386-cross libstdc++6:i386 libstdc++6-i386-cross libsub-override-perl libtirpc-dev:i386 libtirpc3:i386 libtool libubsan1:i386 libubsan1-i386-cross libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:i386 linux-libc-dev-i386-cross m4 man-db po-debconf sensible-utils ucf zlib1g:i386 zlib1g-dev:i386 Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc gcc-11-locales cpp-doc dh-make binutils-multiarch g++-11-multilib-i686-linux-gnu gcc-11-doc gcc-11-multilib-i686-linux-gnu manpages-dev flex bison gdb-i686-linux-gnu gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff glibc-doc:i386 libc-l10n:i386 locales:i386 libnss-nis:i386 libnss-nisplus:i386 manpages-dev:i386 krb5-doc:i386 krb5-user:i386 libstdc++-11-doc:i386 libtool-doc gfortran | fortran95-compiler gcj-jdk libyaml-shell-perl m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libidn2-0:i386 libarchive-cpio-perl krb5-locales:i386 libltdl-dev libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-i686-linux-gnu bsdextrautils cpp-11-i686-linux-gnu cpp-i686-linux-gnu cross-config crossbuild-essential-i386 d-shlibs debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz file g++-11-i686-linux-gnu g++-i686-linux-gnu gcc-11-base:i386 gcc-11-cross-base gcc-11-i686-linux-gnu gcc-11-i686-linux-gnu-base gcc-i686-linux-gnu gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan6:i386 libasan6-i386-cross libatomic1:i386 libatomic1-i386-cross libc6:i386 libc6-dev:i386 libc6-dev-i386-cross libc6-i386-cross libcom-err2:i386 libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev:i386 libcrypt1:i386 libdebhelper-perl libdebian-dpkgcross-perl libelf1 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-11-dev:i386 libgcc-11-dev-i386-cross libgcc-s1:i386 libgcc-s1-i386-cross libgomp1:i386 libgomp1-i386-cross libgssapi-krb5-2:i386 libicu67 libio-string-perl libitm1:i386 libitm1-i386-cross libk5crypto3:i386 libkeyutils1:i386 libkrb5-3:i386 libkrb5support0:i386 liblocale-gettext-perl libmagic-mgc libmagic1 libnsl-dev:i386 libnsl2:i386 libpipeline1 libquadmath0:i386 libquadmath0-i386-cross libsigsegv2 libssl1.1:i386 libstdc++-11-dev:i386 libstdc++-11-dev-i386-cross libstdc++6:i386 libstdc++6-i386-cross libsub-override-perl libtirpc-dev:i386 libtirpc3:i386 libtool libubsan1:i386 libubsan1-i386-cross libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:i386 linux-libc-dev-i386-cross m4 man-db po-debconf sbuild-build-depends-main-dummy:i386 sensible-utils ucf zlib1g:i386 zlib1g-dev:i386 0 upgraded, 101 newly installed, 0 to remove and 0 not upgraded. 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arm64 g++-11-i686-linux-gnu arm64 11.2.0-9cross1 [8672 kB] Get:43 http://mirror.einval.org/debian sid/main arm64 g++-i686-linux-gnu arm64 4:11.2.0-2 [1168 B] Get:44 http://mirror.einval.org/debian sid/main arm64 libconfig-inifiles-perl all 3.000003-1 [52.1 kB] Get:45 http://mirror.einval.org/debian sid/main arm64 libio-string-perl all 1.08-3.1 [11.8 kB] Get:46 http://mirror.einval.org/debian sid/main arm64 libicu67 arm64 67.1-7 [8467 kB] Get:47 http://mirror.einval.org/debian sid/main arm64 libxml2 arm64 2.9.12+dfsg-5 [632 kB] Get:48 http://mirror.einval.org/debian sid/main arm64 libxml-namespacesupport-perl all 1.12-1.1 [14.9 kB] Get:49 http://mirror.einval.org/debian sid/main arm64 libxml-sax-base-perl all 1.09-1.1 [20.7 kB] Get:50 http://mirror.einval.org/debian sid/main arm64 libxml-sax-perl all 1.02+dfsg-3 [59.4 kB] Get:51 http://mirror.einval.org/debian sid/main arm64 libxml-libxml-perl arm64 2.0134+dfsg-2+b1 [326 kB] Get:52 http://mirror.einval.org/debian sid/main arm64 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[1056 kB] Get:74 http://mirror.einval.org/debian sid/main i386 libgcc-s1 i386 11.2.0-10 [49.8 kB] Get:75 http://mirror.einval.org/debian sid/main i386 libc6 i386 2.32-4 [2768 kB] Get:76 http://mirror.einval.org/debian sid/main i386 libasan6 i386 11.2.0-10 [1934 kB] Get:77 http://mirror.einval.org/debian sid/main i386 libatomic1 i386 11.2.0-10 [7728 B] Get:78 http://mirror.einval.org/debian sid/main i386 linux-libc-dev i386 5.14.12-1 [1434 kB] Get:79 http://mirror.einval.org/debian sid/main i386 libcrypt1 i386 1:4.4.25-2 [98.5 kB] Get:80 http://mirror.einval.org/debian sid/main i386 libcrypt-dev i386 1:4.4.25-2 [115 kB] Get:81 http://mirror.einval.org/debian sid/main i386 libcom-err2 i386 1.46.4-1 [75.6 kB] Get:82 http://mirror.einval.org/debian sid/main i386 libkrb5support0 i386 1.18.3-7 [68.6 kB] Get:83 http://mirror.einval.org/debian sid/main i386 libk5crypto3 i386 1.18.3-7 [117 kB] Get:84 http://mirror.einval.org/debian sid/main i386 libkeyutils1 i386 1.6.1-2 [15.9 kB] Get:85 http://mirror.einval.org/debian sid/main i386 libssl1.1 i386 1.1.1l-1 [1552 kB] Get:86 http://mirror.einval.org/debian sid/main i386 libkrb5-3 i386 1.18.3-7 [390 kB] Get:87 http://mirror.einval.org/debian sid/main i386 libgssapi-krb5-2 i386 1.18.3-7 [176 kB] Get:88 http://mirror.einval.org/debian sid/main i386 libtirpc3 i386 1.3.2-2 [91.3 kB] Get:89 http://mirror.einval.org/debian sid/main i386 libnsl2 i386 1.3.0-2 [42.2 kB] Get:90 http://mirror.einval.org/debian sid/main i386 libtirpc-dev i386 1.3.2-2 [201 kB] Get:91 http://mirror.einval.org/debian sid/main i386 libnsl-dev i386 1.3.0-2 [70.6 kB] Get:92 http://mirror.einval.org/debian sid/main i386 libc6-dev i386 2.32-4 [2136 kB] Get:93 http://mirror.einval.org/debian sid/main i386 libgomp1 i386 11.2.0-10 [111 kB] Get:94 http://mirror.einval.org/debian sid/main i386 libitm1 i386 11.2.0-10 [27.7 kB] Get:95 http://mirror.einval.org/debian sid/main i386 libstdc++6 i386 11.2.0-10 [616 kB] Get:96 http://mirror.einval.org/debian sid/main i386 libubsan1 i386 11.2.0-10 [814 kB] Get:97 http://mirror.einval.org/debian sid/main i386 libquadmath0 i386 11.2.0-10 [226 kB] Get:98 http://mirror.einval.org/debian sid/main i386 libgcc-11-dev i386 11.2.0-10 [2334 kB] Get:99 http://mirror.einval.org/debian sid/main i386 libstdc++-11-dev i386 11.2.0-10 [2001 kB] Get:100 http://mirror.einval.org/debian sid/main i386 zlib1g i386 1:1.2.11.dfsg-2 [93.1 kB] Get:101 http://mirror.einval.org/debian sid/main i386 zlib1g-dev i386 1:1.2.11.dfsg-2 [194 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 84.6 MB in 1s (82.1 MB/s) Selecting previously unselected package bsdextrautils. (Reading database ... 12313 files and directories currently installed.) Preparing to unpack .../000-bsdextrautils_2.37.2-4_arm64.deb ... Unpacking bsdextrautils (2.37.2-4) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../001-libuchardet0_0.0.7-1_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../002-groff-base_1.22.4-7_arm64.deb ... Unpacking groff-base (1.22.4-7) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../003-libpipeline1_1.5.3-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.3-1) ... Selecting previously unselected package man-db. Preparing to unpack .../004-man-db_2.9.4-2_arm64.deb ... Unpacking man-db (2.9.4-2) ... Selecting previously unselected package liblocale-gettext-perl. Preparing to unpack .../005-liblocale-gettext-perl_1.07-4+b1_arm64.deb ... Unpacking liblocale-gettext-perl (1.07-4+b1) ... 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Unpacking zlib1g:i386 (1:1.2.11.dfsg-2) ... Selecting previously unselected package zlib1g-dev:i386. Preparing to unpack .../099-zlib1g-dev_1%3a1.2.11.dfsg-2_i386.deb ... Unpacking zlib1g-dev:i386 (1:1.2.11.dfsg-2) ... Selecting previously unselected package sbuild-build-depends-main-dummy:i386. Preparing to unpack .../100-sbuild-build-depends-main-dummy_0.invalid.0_i386.deb ... Unpacking sbuild-build-depends-main-dummy:i386 (0.invalid.0) ... Setting up libconfig-inifiles-perl (3.000003-1) ... Setting up gcc-11-i686-linux-gnu-base:arm64 (11.2.0-9cross1) ... Setting up libpipeline1:arm64 (1.5.3-1) ... Setting up gcc-11-base:i386 (11.2.0-10) ... Setting up libfile-which-perl (1.23-1) ... Setting up bsdextrautils (2.37.2-4) ... update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode Setting up libicu67:arm64 (67.1-7) ... Setting up libmagic-mgc (1:5.39-3) ... Setting up cpp-11-i686-linux-gnu (11.2.0-9cross1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up binutils-i686-linux-gnu (2.37-7) ... Setting up libdebhelper-perl (13.5.2) ... Setting up libmagic1:arm64 (1:5.39-3) ... Setting up linux-libc-dev:i386 (5.14.12-1) ... Setting up libxml-namespacesupport-perl (1.12-1.1) ... Setting up gettext-base (0.21-4) ... Setting up file (1:5.39-3) ... Setting up libyaml-perl (1.30-1) ... Setting up libxml-sax-base-perl (1.09-1.1) ... Setting up libio-string-perl (1.08-3.1) ... Setting up linux-libc-dev-i386-cross (5.10.46-4cross4) ... Setting up autotools-dev (20180224.1+nmu1) ... Setting up cross-config (2.6.18+nmu2) ... Setting up libsigsegv2:arm64 (2.13-1) ... Setting up autopoint (0.21-4) ... Setting up d-shlibs (0.103) ... Setting up gcc-11-cross-base (11.2.0-9cross1) ... Setting up sensible-utils (0.0.17) ... Setting up libuchardet0:arm64 (0.0.7-1) ... Setting up libc6-i386-cross (2.32-1cross4) ... Setting up libsub-override-perl (0.09-2) ... Setting up cpp-i686-linux-gnu (4:11.2.0-2) ... Setting up libfile-homedir-perl (1.006-1) ... Setting up libquadmath0-i386-cross (11.2.0-9cross1) ... Setting up libelf1:arm64 (0.185-2) ... Setting up libxml2:arm64 (2.9.12+dfsg-5) ... Setting up liblocale-gettext-perl (1.07-4+b1) ... Setting up libfile-stripnondeterminism-perl (1.12.0-2) ... Setting up gettext (0.21-4) ... Setting up libtool (2.4.6-15) ... Setting up libatomic1-i386-cross (11.2.0-9cross1) ... Setting up m4 (1.4.18-5) ... Setting up libgomp1-i386-cross (11.2.0-9cross1) ... Setting up libc6-dev-i386-cross (2.32-1cross4) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libgcc-s1-i386-cross (11.2.0-9cross1) ... Setting up libasan6-i386-cross (11.2.0-9cross1) ... Setting up libitm1-i386-cross (11.2.0-9cross1) ... Setting up ucf (3.0043) ... Setting up autoconf (2.71-2) ... Setting up dh-strip-nondeterminism (1.12.0-2) ... Setting up dwz (0.14-1) ... Setting up groff-base (1.22.4-7) ... Setting up automake (1:1.16.5-1) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libxml-sax-perl (1.02+dfsg-3) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libstdc++6-i386-cross (11.2.0-9cross1) ... Setting up dh-autoreconf (20) ... Setting up libxml-libxml-perl (2.0134+dfsg-2+b1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up debhelper (13.5.2) ... Setting up libubsan1-i386-cross (11.2.0-9cross1) ... Setting up libxml-simple-perl (2.25-1) ... Setting up libgcc-11-dev-i386-cross (11.2.0-9cross1) ... Setting up libconfig-auto-perl (0.44-1.1) ... Setting up gcc-11-i686-linux-gnu (11.2.0-9cross1) ... Setting up gcc-i686-linux-gnu (4:11.2.0-2) ... Setting up libstdc++-11-dev-i386-cross (11.2.0-9cross1) ... Setting up libdebian-dpkgcross-perl (2.6.18+nmu2) ... Setting up g++-11-i686-linux-gnu (11.2.0-9cross1) ... Setting up dpkg-cross (2.6.18+nmu2) ... Setting up g++-i686-linux-gnu (4:11.2.0-2) ... Setting up crossbuild-essential-i386 (12.9) ... Setting up libgcc-s1:i386 (11.2.0-10) ... Setting up libc6:i386 (2.32-4) ... Setting up libstdc++6:i386 (11.2.0-10) ... Setting up libitm1:i386 (11.2.0-10) ... Setting up libkeyutils1:i386 (1.6.1-2) ... Setting up libssl1.1:i386 (1.1.1l-1) ... Setting up zlib1g:i386 (1:1.2.11.dfsg-2) ... Setting up libcrypt1:i386 (1:4.4.25-2) ... Setting up libcom-err2:i386 (1.46.4-1) ... Setting up libgomp1:i386 (11.2.0-10) ... Setting up libasan6:i386 (11.2.0-10) ... Setting up libkrb5support0:i386 (1.18.3-7) ... Setting up libquadmath0:i386 (11.2.0-10) ... Setting up libatomic1:i386 (11.2.0-10) ... Setting up libk5crypto3:i386 (1.18.3-7) ... Setting up libubsan1:i386 (11.2.0-10) ... Setting up libgcc-11-dev:i386 (11.2.0-10) ... Setting up libcrypt-dev:i386 (1:4.4.25-2) ... Setting up libkrb5-3:i386 (1.18.3-7) ... Setting up libgssapi-krb5-2:i386 (1.18.3-7) ... Setting up libtirpc3:i386 (1.3.2-2) ... Setting up libtirpc-dev:i386 (1.3.2-2) ... Setting up libnsl2:i386 (1.3.0-2) ... Setting up libnsl-dev:i386 (1.3.0-2) ... Setting up libc6-dev:i386 (2.32-4) ... Setting up libstdc++-11-dev:i386 (11.2.0-10) ... Setting up zlib1g-dev:i386 (1:1.2.11.dfsg-2) ... Setting up sbuild-build-depends-main-dummy:i386 (0.invalid.0) ... Processing triggers for libc-bin (2.32-4) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (i386 included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 5.9.0-0.bpo.2-arm64 #1 SMP Debian 5.9.6-1~bpo10+1 (2020-11-19) arm64 (aarch64) Toolchain package versions: binutils_2.37-7 dpkg-dev_1.20.9 g++-11_11.2.0-10 gcc-11_11.2.0-10 libc6-dev_2.32-4 libstdc++-11-dev_11.2.0-10 libstdc++-11-dev-i386-cross_11.2.0-9cross1 libstdc++6_11.2.0-10 libstdc++6-i386-cross_11.2.0-9cross1 linux-libc-dev_5.14.12-1 Package versions: adduser_3.118 apt_2.3.11 autoconf_2.71-2 automake_1:1.16.5-1 autopoint_0.21-4 autotools-dev_20180224.1+nmu1 base-files_12 base-passwd_3.5.52 bash_5.1-3+b2 binutils_2.37-7 binutils-aarch64-linux-gnu_2.37-7 binutils-common_2.37-7 binutils-i686-linux-gnu_2.37-7 bsdextrautils_2.37.2-4 bsdutils_1:2.37.2-4 build-essential_12.9 bzip2_1.0.8-4 coreutils_8.32-4 cpp_4:11.2.0-2 cpp-11_11.2.0-10 cpp-11-i686-linux-gnu_11.2.0-9cross1 cpp-i686-linux-gnu_4:11.2.0-2 cross-config_2.6.18+nmu2 crossbuild-essential-i386_12.9 d-shlibs_0.103 dash_0.5.11+git20210120+802ebd4-2 debconf_1.5.78 debhelper_13.5.2 debian-archive-keyring_2021.1.1 debianutils_5.5-1 dh-autoreconf_20 dh-strip-nondeterminism_1.12.0-2 diffutils_1:3.7-5 dpkg_1.20.9 dpkg-cross_2.6.18+nmu2 dpkg-dev_1.20.9 dwz_0.14-1 fakeroot_1.26-1 file_1:5.39-3 findutils_4.8.0-1 g++_4:11.2.0-2 g++-11_11.2.0-10 g++-11-i686-linux-gnu_11.2.0-9cross1 g++-i686-linux-gnu_4:11.2.0-2 gcc_4:11.2.0-2 gcc-10-base_10.3.0-11 gcc-11_11.2.0-10 gcc-11-base_11.2.0-10 gcc-11-cross-base_11.2.0-9cross1 gcc-11-i686-linux-gnu_11.2.0-9cross1 gcc-11-i686-linux-gnu-base_11.2.0-9cross1 gcc-i686-linux-gnu_4:11.2.0-2 gettext_0.21-4 gettext-base_0.21-4 gpgv_2.2.27-2 grep_3.7-1 groff-base_1.22.4-7 gzip_1.10-4 hostname_3.23 init-system-helpers_1.60 intltool-debian_0.35.0+20060710.5 libacl1_2.3.1-1 libapt-pkg6.0_2.3.11 libarchive-zip-perl_1.68-1 libasan6_11.2.0-10 libasan6-i386-cross_11.2.0-9cross1 libatomic1_11.2.0-10 libatomic1-i386-cross_11.2.0-9cross1 libattr1_1:2.5.1-1 libaudit-common_1:3.0.6-1 libaudit1_1:3.0.6-1 libbinutils_2.37-7 libblkid1_2.37.2-4 libbz2-1.0_1.0.8-4 libc-bin_2.32-4 libc-dev-bin_2.32-4 libc6_2.32-4 libc6-dev_2.32-4 libc6-dev-i386-cross_2.32-1cross4 libc6-i386-cross_2.32-1cross4 libcap-ng0_0.7.9-2.2+b1 libcap2_1:2.44-1 libcc1-0_11.2.0-10 libcom-err2_1.46.4-1 libconfig-auto-perl_0.44-1.1 libconfig-inifiles-perl_3.000003-1 libcrypt-dev_1:4.4.25-2 libcrypt1_1:4.4.25-2 libctf-nobfd0_2.37-7 libctf0_2.37-7 libdb5.3_5.3.28+dfsg1-0.8 libdebconfclient0_0.260 libdebhelper-perl_13.5.2 libdebian-dpkgcross-perl_2.6.18+nmu2 libdpkg-perl_1.20.9 libelf1_0.185-2 libfakeroot_1.26-1 libffi8_3.4.2-3 libfile-homedir-perl_1.006-1 libfile-stripnondeterminism-perl_1.12.0-2 libfile-which-perl_1.23-1 libgcc-11-dev_11.2.0-10 libgcc-11-dev-i386-cross_11.2.0-9cross1 libgcc-s1_11.2.0-10 libgcc-s1-i386-cross_11.2.0-9cross1 libgcrypt20_1.9.4-3+b1 libgdbm-compat4_1.22-1 libgdbm6_1.22-1 libgmp10_2:6.2.1+dfsg-2 libgnutls30_3.7.2-2 libgomp1_11.2.0-10 libgomp1-i386-cross_11.2.0-9cross1 libgpg-error0_1.42-3 libgssapi-krb5-2_1.18.3-7 libhogweed6_3.7.3-1 libhwasan0_11.2.0-10 libicu67_67.1-7 libidn2-0_2.3.2-2 libio-string-perl_1.08-3.1 libisl23_0.24-2 libitm1_11.2.0-10 libitm1-i386-cross_11.2.0-9cross1 libk5crypto3_1.18.3-7 libkeyutils1_1.6.1-2 libkrb5-3_1.18.3-7 libkrb5support0_1.18.3-7 liblocale-gettext-perl_1.07-4+b1 liblsan0_11.2.0-10 liblz4-1_1.9.3-2 liblzma5_5.2.5-2 libmagic-mgc_1:5.39-3 libmagic1_1:5.39-3 libmount1_2.37.2-4 libmpc3_1.2.1-1 libmpfr6_4.1.0-3 libnettle8_3.7.3-1 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libp11-kit0_0.24.0-5 libpam-modules_1.4.0-10 libpam-modules-bin_1.4.0-10 libpam-runtime_1.4.0-10 libpam0g_1.4.0-10 libpcre2-8-0_10.36-2 libpcre3_2:8.39-13 libperl5.32_5.32.1-6 libpipeline1_1.5.3-1 libquadmath0_11.2.0-10 libquadmath0-i386-cross_11.2.0-9cross1 libseccomp2_2.5.2-2 libselinux1_3.1-3 libsemanage-common_3.1-1 libsemanage1_3.1-1+b2 libsepol1_3.1-1 libsigsegv2_2.13-1 libsmartcols1_2.37.2-4 libssl1.1_1.1.1l-1 libstdc++-11-dev_11.2.0-10 libstdc++-11-dev-i386-cross_11.2.0-9cross1 libstdc++6_11.2.0-10 libstdc++6-i386-cross_11.2.0-9cross1 libsub-override-perl_0.09-2 libsystemd0_249.5-1 libtasn1-6_4.17.0-2 libtinfo6_6.2+20210905-1 libtirpc-common_1.3.2-2 libtirpc-dev_1.3.2-2 libtirpc3_1.3.2-2 libtool_2.4.6-15 libtsan0_11.2.0-10 libubsan1_11.2.0-10 libubsan1-i386-cross_11.2.0-9cross1 libuchardet0_0.0.7-1 libudev1_249.5-1 libunistring2_0.9.10-6 libuuid1_2.37.2-4 libxml-libxml-perl_2.0134+dfsg-2+b1 libxml-namespacesupport-perl_1.12-1.1 libxml-sax-base-perl_1.09-1.1 libxml-sax-perl_1.02+dfsg-3 libxml-simple-perl_2.25-1 libxml2_2.9.12+dfsg-5 libxxhash0_0.8.0-2 libyaml-perl_1.30-1 libzstd1_1.4.8+dfsg-3 linux-libc-dev_5.14.12-1 linux-libc-dev-i386-cross_5.10.46-4cross4 login_1:4.8.1-1 lsb-base_11.1.0 m4_1.4.18-5 make_4.3-4.1 man-db_2.9.4-2 mawk_1.3.4.20200120-2 mount_2.37.2-4 ncurses-base_6.2+20210905-1 ncurses-bin_6.2+20210905-1 passwd_1:4.8.1-1 patch_2.7.6-7 perl_5.32.1-6 perl-base_5.32.1-6 perl-modules-5.32_5.32.1-6 po-debconf_1.0.21+nmu1 rpcsvc-proto_1.4.2-4 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.8-1 sensible-utils_0.0.17 sysvinit-utils_3.00-1 tar_1.34+dfsg-1 tzdata_2021e-1 ucf_3.0043 util-linux_2.37.2-4 xz-utils_5.2.5-2 zlib1g_1:1.2.11.dfsg-2 zlib1g-dev_1:1.2.11.dfsg-2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: libgkarrays Binary: libgkarrays1, libgkarrays-dev Architecture: any Version: 2.1.0+dfsg-4 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: http://crac.gforge.inria.fr/gkarrays/ Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/med-team/libgkarrays Vcs-Git: https://salsa.debian.org/med-team/libgkarrays.git Build-Depends: debhelper-compat (= 13), d-shlibs, zlib1g-dev Package-List: libgkarrays-dev deb libdevel optional arch=any libgkarrays1 deb libs optional arch=any Checksums-Sha1: fd7dafda51703ba61c8221ba158143c376bc1d86 97880 libgkarrays_2.1.0+dfsg.orig.tar.xz 63b9ce09e2eb0312bfd77bdd65c638431f280b68 10864 libgkarrays_2.1.0+dfsg-4.debian.tar.xz Checksums-Sha256: bb73beac8d9c3e6b4acfebba325904a98653357f8373ec60ed3614ff6f04bb84 97880 libgkarrays_2.1.0+dfsg.orig.tar.xz 98714dab107f399e6eba7346b24fc9e53b53df62acfdd9fe09d2a8e9feae8b6a 10864 libgkarrays_2.1.0+dfsg-4.debian.tar.xz Files: e810e849c1eb934e0a366d27d8043015 97880 libgkarrays_2.1.0+dfsg.orig.tar.xz 673814d6be34c44098468bfe724bf406 10864 libgkarrays_2.1.0+dfsg-4.debian.tar.xz -----BEGIN PGP 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made Thu Nov 19 09:46:25 2020 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./libgkarrays_2.1.0+dfsg-4.dsc dpkg-source: info: extracting libgkarrays in /<> dpkg-source: info: unpacking libgkarrays_2.1.0+dfsg.orig.tar.xz dpkg-source: info: unpacking libgkarrays_2.1.0+dfsg-4.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying proper_soname.patch dpkg-source: info: applying fix_pkg-config.patch Check disk space ---------------- Sufficient free space for build +------------------------------------------------------------------------------+ | Starting Timed Build Commands | +------------------------------------------------------------------------------+ ulimit -c --------- 0 I: Finished running 'ulimit -c'. Finished processing commands. -------------------------------------------------------------------------------- User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.i386 DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_GB.UTF-8 LC_ALL=C.UTF-8 LOGNAME=helmutg PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=crossqa-sid SCHROOT_CHROOT_NAME=crossqa-sid SCHROOT_COMMAND=env SCHROOT_GID=1002 SCHROOT_GROUP=helmutg SCHROOT_SESSION_ID=crossqa-sid-d419eb1e-edbc-458a-9244-33e86e6ff833 SCHROOT_UID=1002 SCHROOT_USER=helmutg SHELL=/bin/sh USER=helmutg dpkg-buildpackage ----------------- Command: dpkg-buildpackage -ai386 -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package libgkarrays dpkg-buildpackage: info: source version 2.1.0+dfsg-4 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-architecture: warning: specified GNU system type i686-linux-gnu does not match CC system type aarch64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 debian/rules clean dh clean dh_clean debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a aclocal: warning: couldn't open directory 'config/m4': No such file or directory autoreconf: warning: autoconf input should be named 'configure.ac', not 'configure.in' aclocal: warning: autoconf input should be named 'configure.ac', not 'configure.in' aclocal: warning: couldn't open directory 'm4': No such file or directory libtoolize: putting auxiliary files in '.'. libtoolize: copying file './ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'. libtoolize: copying file 'm4/libtool.m4' libtoolize: copying file 'm4/ltoptions.m4' libtoolize: copying file 'm4/ltsugar.m4' libtoolize: copying file 'm4/ltversion.m4' libtoolize: copying file 'm4/lt~obsolete.m4' aclocal: warning: autoconf input should be named 'configure.ac', not 'configure.in' configure.in:32: warning: The macro `AM_PROG_LIBTOOL' is obsolete. configure.in:32: You should run autoupdate. m4/libtool.m4:100: AM_PROG_LIBTOOL is expanded from... configure.in:32: the top level configure.in:74: warning: The macro `AC_HEADER_STDC' is obsolete. configure.in:74: You should run autoupdate. ./lib/autoconf/headers.m4:704: AC_HEADER_STDC is expanded from... configure.in:74: the top level autoheader: warning: autoconf input should be named 'configure.ac', not 'configure.in' automake: warning: autoconf input should be named 'configure.ac', not 'configure.in' configure.in:32: installing './compile' configure.in:32: installing './config.guess' configure.in:32: installing './config.sub' configure.in:31: installing './install-sh' configure.in:31: installing './missing' automake: warning: autoconf input should be named 'configure.ac', not 'configure.in' doc/Makefile.am:2: warning: suffix '.texinfo' for Texinfo files is discouraged; use '.texi' instead doc/Makefile.am:2: installing 'doc/texinfo.tex' libProgressBar/Makefile.am: installing './depcomp' libtoolize: putting auxiliary files in AC_CONFIG_AUX_DIR, 'config'. libtoolize: copying file 'config/ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'config/m4'. libtoolize: copying file 'config/m4/libtool.m4' libtoolize: copying file 'config/m4/ltoptions.m4' libtoolize: copying file 'config/m4/ltsugar.m4' libtoolize: copying file 'config/m4/ltversion.m4' libtoolize: copying file 'config/m4/lt~obsolete.m4' configure.ac:213: installing 'config/compile' configure.ac:231: installing 'config/config.guess' configure.ac:231: installing 'config/config.sub' configure.ac:206: installing 'config/install-sh' configure.ac:206: installing 'config/missing' doc/Makefile.am:107: installing 'config/texinfo.tex' src/Makefile.am:117: warning: source file '$(SUX_DIR)/rank9b.cpp' is in a subdirectory, src/Makefile.am:117: but option 'subdir-objects' is disabled automake: warning: possible forward-incompatibility. automake: At least one source file is in a subdirectory, but the 'subdir-objects' automake: automake option hasn't been enabled. For now, the corresponding output automake: object file(s) will be placed in the top-level directory. However, this automake: behavior may change in a future Automake major version, with object automake: files being placed in the same subdirectory as the corresponding sources. automake: You are advised to start using 'subdir-objects' option throughout your automake: project, to avoid future incompatibilities. src/Makefile.am: installing 'config/depcomp' tests/Makefile.am:125: warning: wildcard dataset/*.fa: non-POSIX variable name tests/Makefile.am:125: (probably a GNU make extension) parallel-tests: installing 'config/test-driver' dh_auto_configure -a ./configure --build=aarch64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/i386-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --host=i686-linux-gnu configure: loading site script /etc/dpkg-cross/cross-config.i386 checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for i686-linux-gnu-strip... i686-linux-gnu-strip checking for a race-free mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for i686-linux-gnu-g++... i686-linux-gnu-g++ checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... yes checking for suffix of object files... o checking whether the compiler supports GNU C++... yes checking whether i686-linux-gnu-g++ accepts -g... yes checking for i686-linux-gnu-g++ option to enable C++11 features... none needed checking whether make supports the include directive... yes (GNU style) checking dependency style of i686-linux-gnu-g++... none checking for gawk... (cached) mawk checking for i686-linux-gnu-gcc... i686-linux-gnu-gcc checking whether the compiler supports GNU C... yes checking whether i686-linux-gnu-gcc accepts -g... yes checking for i686-linux-gnu-gcc option to enable C11 features... none needed checking whether i686-linux-gnu-gcc understands -c and -o together... yes checking dependency style of i686-linux-gnu-gcc... none checking how to run the C preprocessor... i686-linux-gnu-gcc -E checking whether ln -s works... yes checking whether make sets $(MAKE)... (cached) yes checking for texi2dvi... no checking for pdftex... no checking for kpsewhich... no configure: WARNING: The 'texi2dvi' or 'pdftex' program could not be found. This isn't critical, but it means that you won't be able to create the documentation and thus to make releases. configure: WARNING: The 'texi2dvi' or 'pdftex' is missing a correct latex installation. This isn't critical, but it means that you won't be able to create the documentation and thus to make releases. checking build system type... aarch64-unknown-linux-gnu checking host system type... i686-pc-linux-gnu checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by i686-linux-gnu-gcc... /usr/i686-linux-gnu/bin/ld checking if the linker (/usr/i686-linux-gnu/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/i686-linux-gnu-nm -B checking the name lister (/usr/bin/i686-linux-gnu-nm -B) interface... BSD nm checking the maximum length of command line arguments... 1572864 checking how to convert aarch64-unknown-linux-gnu file names to i686-pc-linux-gnu format... func_convert_file_noop checking how to convert aarch64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/i686-linux-gnu/bin/ld option to reload object files... -r checking for i686-linux-gnu-objdump... i686-linux-gnu-objdump checking how to recognize dependent libraries... pass_all checking for i686-linux-gnu-dlltool... no checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for i686-linux-gnu-ar... i686-linux-gnu-ar checking for archiver @FILE support... @ checking for i686-linux-gnu-strip... (cached) i686-linux-gnu-strip checking for i686-linux-gnu-ranlib... i686-linux-gnu-ranlib checking command to parse /usr/bin/i686-linux-gnu-nm -B output from i686-linux-gnu-gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for i686-linux-gnu-mt... no checking for mt... no checking if : is a manifest tool... no checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if i686-linux-gnu-gcc supports -fno-rtti -fno-exceptions... no checking for i686-linux-gnu-gcc option to produce PIC... -fPIC -DPIC checking if i686-linux-gnu-gcc PIC flag -fPIC -DPIC works... yes checking if i686-linux-gnu-gcc static flag -static works... yes checking if i686-linux-gnu-gcc supports -c -o file.o... yes checking if i686-linux-gnu-gcc supports -c -o file.o... (cached) yes checking whether the i686-linux-gnu-gcc linker (/usr/i686-linux-gnu/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking how to run the C++ preprocessor... i686-linux-gnu-g++ -E checking for ld used by i686-linux-gnu-g++... /usr/i686-linux-gnu/bin/ld checking if the linker (/usr/i686-linux-gnu/bin/ld) is GNU ld... yes checking whether the i686-linux-gnu-g++ linker (/usr/i686-linux-gnu/bin/ld) supports shared libraries... yes checking for i686-linux-gnu-g++ option to produce PIC... -fPIC -DPIC checking if i686-linux-gnu-g++ PIC flag -fPIC -DPIC works... yes checking if i686-linux-gnu-g++ static flag -static works... yes checking if i686-linux-gnu-g++ supports -c -o file.o... yes checking if i686-linux-gnu-g++ supports -c -o file.o... (cached) yes checking whether the i686-linux-gnu-g++ linker (/usr/i686-linux-gnu/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for ld used by i686-linux-gnu-gcc... (cached) /usr/i686-linux-gnu/bin/ld checking if the linker (/usr/i686-linux-gnu/bin/ld) is GNU ld... (cached) yes checking for dpkg... /usr/bin/dpkg checking for stdint.h... (cached) yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for sys/time.h... yes checking for inline... inline checking for GNU libc compatible malloc... (cached) yes checking for GNU libc compatible realloc... (cached) yes checking for gettimeofday... yes checking for memset... yes checking for select... yes checking for _Bool... yes checking for stdbool.h that conforms to C99... yes checking for size_t... yes checking for uint8_t... yes checking for uint32_t... yes checking for uint64_t... yes checking for unsigned long long int... yes checking for gzread in -lz... yes checking for pthread_create in -lpthread... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating postinst chmod: cannot access 'prerm': No such file or directory config.status: creating prerm config.status: creating control config.status: creating libGkArrays.pc config.status: creating Makefile config.status: creating src/Makefile config.status: creating tests/Makefile config.status: creating src/sux/Makefile config.status: creating src/kseq/Makefile config.status: creating doc/Makefile config.status: creating doc/libGkArrays.3 config.status: creating doc/package.texi config.status: creating config/config.h config.status: executing depfiles commands config.status: executing libtool commands === configuring in src/libProgressBar-1.2.0 (/<>/src/libProgressBar-1.2.0) configure: running /bin/bash ./configure --disable-option-checking '--prefix=/usr' '--build=aarch64-linux-gnu' '--includedir=${prefix}/include' '--mandir=${prefix}/share/man' '--infodir=${prefix}/share/info' '--sysconfdir=/etc' '--localstatedir=/var' '--disable-silent-rules' '--libdir=${prefix}/lib/i386-linux-gnu' '--runstatedir=/run' '--disable-maintainer-mode' '--disable-dependency-tracking' '--host=i686-linux-gnu' 'build_alias=aarch64-linux-gnu' 'host_alias=i686-linux-gnu' 'CXXFLAGS=-g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security' 'LDFLAGS=-Wl,-z,relro -Wl,-z,now' 'CPPFLAGS=-Wdate-time -D_FORTIFY_SOURCE=2' 'CFLAGS=-g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security' --cache-file=/dev/null --srcdir=. configure: loading site script /etc/dpkg-cross/cross-config.i386 checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for i686-linux-gnu-strip... i686-linux-gnu-strip checking for a race-free mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking build system type... aarch64-unknown-linux-gnu checking host system type... i686-pc-linux-gnu checking how to print strings... printf checking whether make supports the include directive... yes (GNU style) checking for i686-linux-gnu-gcc... i686-linux-gnu-gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... yes checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether i686-linux-gnu-gcc accepts -g... yes checking for i686-linux-gnu-gcc option to enable C11 features... none needed checking whether i686-linux-gnu-gcc understands -c and -o together... yes checking dependency style of i686-linux-gnu-gcc... none checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by i686-linux-gnu-gcc... /usr/i686-linux-gnu/bin/ld checking if the linker (/usr/i686-linux-gnu/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/i686-linux-gnu-nm -B checking the name lister (/usr/bin/i686-linux-gnu-nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert aarch64-unknown-linux-gnu file names to i686-pc-linux-gnu format... func_convert_file_noop checking how to convert aarch64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/i686-linux-gnu/bin/ld option to reload object files... -r checking for i686-linux-gnu-objdump... i686-linux-gnu-objdump checking how to recognize dependent libraries... pass_all checking for i686-linux-gnu-dlltool... no checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for i686-linux-gnu-ar... i686-linux-gnu-ar checking for archiver @FILE support... @ checking for i686-linux-gnu-strip... (cached) i686-linux-gnu-strip checking for i686-linux-gnu-ranlib... i686-linux-gnu-ranlib checking command to parse /usr/bin/i686-linux-gnu-nm -B output from i686-linux-gnu-gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for i686-linux-gnu-mt... no checking for mt... no checking if : is a manifest tool... no checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if i686-linux-gnu-gcc supports -fno-rtti -fno-exceptions... no checking for i686-linux-gnu-gcc option to produce PIC... -fPIC -DPIC checking if i686-linux-gnu-gcc PIC flag -fPIC -DPIC works... yes checking if i686-linux-gnu-gcc static flag -static works... yes checking if i686-linux-gnu-gcc supports -c -o file.o... yes checking if i686-linux-gnu-gcc supports -c -o file.o... (cached) yes checking whether the i686-linux-gnu-gcc linker (/usr/i686-linux-gnu/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for i686-linux-gnu-gcc... (cached) i686-linux-gnu-gcc checking whether the compiler supports GNU C... (cached) yes checking whether i686-linux-gnu-gcc accepts -g... (cached) yes checking for i686-linux-gnu-gcc option to enable C11 features... (cached) none needed checking whether i686-linux-gnu-gcc understands -c and -o together... (cached) yes checking dependency style of i686-linux-gnu-gcc... (cached) none checking for i686-linux-gnu-g++... i686-linux-gnu-g++ checking whether the compiler supports GNU C++... yes checking whether i686-linux-gnu-g++ accepts -g... yes checking for i686-linux-gnu-g++ option to enable C++11 features... none needed checking dependency style of i686-linux-gnu-g++... none checking how to run the C++ preprocessor... i686-linux-gnu-g++ -E checking for ld used by i686-linux-gnu-g++... /usr/i686-linux-gnu/bin/ld checking if the linker (/usr/i686-linux-gnu/bin/ld) is GNU ld... yes checking whether the i686-linux-gnu-g++ linker (/usr/i686-linux-gnu/bin/ld) supports shared libraries... yes checking for i686-linux-gnu-g++ option to produce PIC... -fPIC -DPIC checking if i686-linux-gnu-g++ PIC flag -fPIC -DPIC works... yes checking if i686-linux-gnu-g++ static flag -static works... yes checking if i686-linux-gnu-g++ supports -c -o file.o... yes checking if i686-linux-gnu-g++ supports -c -o file.o... (cached) yes checking whether the i686-linux-gnu-g++ linker (/usr/i686-linux-gnu/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for dpkg... /usr/bin/dpkg checking for rpmbuild... no checking for rpm... no checking for texi2dvi... no checking for pdftex... no checking for kpsewhich... no configure: WARNING: The 'texi2dvi' or 'pdftex' program could not be found. This isn't critical, but it means that you won't be able to create the documentation and thus to make releases. configure: WARNING: The 'texi2dvi' or 'pdftex' is missing a correct latex installation. This isn't critical, but it means that you won't be able to create the documentation and thus to make releases. checking for an ANSI C-conforming const... yes checking for inline... inline checking for sys/mkdev.h... no checking for sys/sysmacros.h... yes checking for size_t... yes checking for working alloca.h... yes checking for alloca... yes checking whether struct tm is in sys/time.h or time.h... time.h checking for struct stat.st_blocks... yes checking whether ln -s works... yes checking for egrep... (cached) /bin/grep -E checking for unistd.h... (cached) yes checking for sys/param.h... yes checking for sys/time.h... yes checking for time.h... yes checking for sys/sysmacros.h... (cached) yes checking for string.h... (cached) yes checking for strings.h... (cached) yes checking for memory.h... yes checking for fcntl.h... yes checking for alloca.h... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating postinst chmod: cannot access 'prerm': No such file or directory config.status: creating prerm config.status: creating libProgressBar.lsm config.status: creating libProgressBar.spec config.status: creating control config.status: creating libProgressBar.pc config.status: creating Makefile config.status: creating libProgressBar/Makefile config.status: creating doc/Makefile config.status: creating doc/libProgressBar.3 config.status: creating libProgressBar/config.h config.status: executing depfiles commands config.status: executing libtool commands dh_auto_build -a make -j1 make[1]: Entering directory '/<>' Making all in src make[2]: Entering directory '/<>/src' Making all in kseq make[3]: Entering directory '/<>/src/kseq' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/<>/src/kseq' Making all in sux make[3]: Entering directory '/<>/src/sux' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/<>/src/sux' Making all in libProgressBar-1.2.0 make[3]: Entering directory '/<>/src/libProgressBar-1.2.0' Making all in libProgressBar make[4]: Entering directory '/<>/src/libProgressBar-1.2.0/libProgressBar' make all-am make[5]: Entering directory '/<>/src/libProgressBar-1.2.0/libProgressBar' i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -O6 -Wall --pedantic --ansi -c -o testPB.o testPB.cpp /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -O6 -Wall --pedantic --ansi -c -o progressBar.lo progressBar.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -O6 -Wall --pedantic --ansi -c progressBar.cpp -fPIC -DPIC -o .libs/progressBar.o libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -O6 -Wall --pedantic --ansi -c progressBar.cpp -o progressBar.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=link i686-linux-gnu-g++ -O6 -Wall --pedantic --ansi -version-info 1:2:1 -Wl,-z,relro -Wl,-z,now -o libProgressBar.la -rpath /usr/lib/i386-linux-gnu progressBar.lo libtool: link: i686-linux-gnu-g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc-cross/i686-linux-gnu/11/../../../../i686-linux-gnu/lib/../lib/crti.o /usr/lib/gcc-cross/i686-linux-gnu/11/crtbeginS.o .libs/progressBar.o -L/usr/lib/gcc-cross/i686-linux-gnu/11 -L/usr/lib/gcc-cross/i686-linux-gnu/11/../../../../i686-linux-gnu/lib/../lib -L/lib/i386-linux-gnu -L/lib/../lib -L/usr/lib/i386-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc-cross/i686-linux-gnu/11/../../../../i686-linux-gnu/lib -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc-cross/i686-linux-gnu/11/crtendS.o /usr/lib/gcc-cross/i686-linux-gnu/11/../../../../i686-linux-gnu/lib/../lib/crtn.o -O6 -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,libProgressBar.so.0 -o .libs/libProgressBar.so.0.1.2 libtool: link: (cd ".libs" && rm -f "libProgressBar.so.0" && ln -s "libProgressBar.so.0.1.2" "libProgressBar.so.0") libtool: link: (cd ".libs" && rm -f "libProgressBar.so" && ln -s "libProgressBar.so.0.1.2" "libProgressBar.so") libtool: link: i686-linux-gnu-ar cr .libs/libProgressBar.a progressBar.o libtool: link: i686-linux-gnu-ranlib .libs/libProgressBar.a libtool: link: ( cd ".libs" && rm -f "libProgressBar.la" && ln -s "../libProgressBar.la" "libProgressBar.la" ) /bin/bash ../libtool --tag=CXX --mode=link i686-linux-gnu-g++ -O6 -Wall --pedantic --ansi -lProgressBar -Wl,-z,relro -Wl,-z,now -o testProgressBar testPB.o libProgressBar.la libtool: link: i686-linux-gnu-g++ -O6 -Wall --pedantic --ansi -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testProgressBar testPB.o /<>/src/libProgressBar-1.2.0/libProgressBar/.libs/libProgressBar.so ./.libs/libProgressBar.so -Wl,-rpath -Wl,/usr/lib/i386-linux-gnu make[5]: Leaving directory '/<>/src/libProgressBar-1.2.0/libProgressBar' make[4]: Leaving directory '/<>/src/libProgressBar-1.2.0/libProgressBar' make[4]: Entering directory '/<>/src/libProgressBar-1.2.0' cp "libProgressBar.pc" "libProgressBar-1.2.0.pc" make[4]: Leaving directory '/<>/src/libProgressBar-1.2.0' make[3]: Leaving directory '/<>/src/libProgressBar-1.2.0' make[3]: Entering directory '/<>/src' i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../config -I/<> -I/<>/src/libProgressBar-1.2.0/ -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o buildTables.o buildTables.cpp In file included from ./readsReader.h:109, from ./gkArrays.h:115, from buildTables.cpp:111: ./kseq/kseq.h:169:14: warning: ‘int kseq_read(kseq_t*)’ defined but not used [-Wunused-function] 169 | static int kseq_read(kseq_t *seq) \ | ^~~~~~~~~ ./kseq/kseq.h:227:3: note: in expansion of macro ‘__KSEQ_READ’ 227 | __KSEQ_READ | ^~~~~~~~~~~ ./readsReader.h:111:1: note: in expansion of macro ‘KSEQ_INIT’ 111 | KSEQ_INIT(gzFile, gzread) | ^~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../config -I/<> -I/<>/src/libProgressBar-1.2.0/ -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gkArrays.lo gkArrays.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../config -I/<> -I/<>/src/libProgressBar-1.2.0/ -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c gkArrays.cpp -fPIC -DPIC -o .libs/gkArrays.o In file included from readsReader.h:109, from gkArrays.h:115, from gkArrays.cpp:113: kseq/kseq.h:169:14: warning: ‘int kseq_read(kseq_t*)’ defined but not used [-Wunused-function] 169 | static int kseq_read(kseq_t *seq) \ | ^~~~~~~~~ kseq/kseq.h:227:3: note: in expansion of macro ‘__KSEQ_READ’ 227 | __KSEQ_READ | ^~~~~~~~~~~ readsReader.h:111:1: note: in expansion of macro ‘KSEQ_INIT’ 111 | KSEQ_INIT(gzFile, gzread) | ^~~~~~~~~ In file included from /usr/i686-linux-gnu/include/string.h:519, from /usr/i686-linux-gnu/include/c++/11/cstring:42, from gkArrays.cpp:109: In function ‘char* strncpy(char*, const char*, size_t)’, inlined from ‘char* gkarrays::gkArrays::getTagFactor(uint, uint, uint)’ at gkArrays.cpp:454:14: /usr/i686-linux-gnu/include/bits/string_fortified.h:91:34: warning: ‘char* __builtin_strncpy(char*, const char*, unsigned int)’ output may be truncated copying 4 bytes from a string of length 4 [-Wstringop-truncation] 91 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘char* strncpy(char*, const char*, size_t)’, inlined from ‘char* gkarrays::gkArrays::getTagFactor(uint, uint, uint)’ at gkArrays.cpp:460:14: /usr/i686-linux-gnu/include/bits/string_fortified.h:91:34: warning: ‘char* __builtin_strncpy(char*, const char*, unsigned int)’ output may be truncated copying between 0 and 3 bytes from a string of length 4 [-Wstringop-truncation] 91 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘char* strncpy(char*, const char*, size_t)’, inlined from ‘char* gkarrays::gkArrays::getTag(uint)’ at gkArrays.cpp:425:14: /usr/i686-linux-gnu/include/bits/string_fortified.h:91:34: warning: ‘char* __builtin_strncpy(char*, const char*, unsigned int)’ output may be truncated copying 4 bytes from a string of length 4 [-Wstringop-truncation] 91 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘char* strncpy(char*, const char*, size_t)’, inlined from ‘char* gkarrays::gkArrays::getTag(uint)’ at gkArrays.cpp:430:14: /usr/i686-linux-gnu/include/bits/string_fortified.h:91:34: warning: ‘char* __builtin_strncpy(char*, const char*, unsigned int)’ output may be truncated copying between 0 and 3 bytes from a string of length 4 [-Wstringop-truncation] 91 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../config -I/<> -I/<>/src/libProgressBar-1.2.0/ -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c gkArrays.cpp -o gkArrays.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../config -I/<> -I/<>/src/libProgressBar-1.2.0/ -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o solArray.lo solArray.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../config -I/<> -I/<>/src/libProgressBar-1.2.0/ -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c solArray.cpp -fPIC -DPIC -o .libs/solArray.o libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../config -I/<> -I/<>/src/libProgressBar-1.2.0/ -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c solArray.cpp -o solArray.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../config -I/<> -I/<>/src/libProgressBar-1.2.0/ -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o utils.lo utils.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../config -I/<> -I/<>/src/libProgressBar-1.2.0/ -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c utils.cpp -fPIC -DPIC -o .libs/utils.o libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../config -I/<> -I/<>/src/libProgressBar-1.2.0/ -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c utils.cpp -o utils.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../config -I/<> -I/<>/src/libProgressBar-1.2.0/ -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gkArraysBuilder.lo gkArraysBuilder.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../config -I/<> -I/<>/src/libProgressBar-1.2.0/ -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c gkArraysBuilder.cpp -fPIC -DPIC -o .libs/gkArraysBuilder.o In file included from readsReader.h:109, from gkArrays.h:115, from gkArraysBuilder.h:105, from gkArraysBuilder.cpp:103: kseq/kseq.h:169:14: warning: ‘int kseq_read(kseq_t*)’ defined but not used [-Wunused-function] 169 | static int kseq_read(kseq_t *seq) \ | ^~~~~~~~~ kseq/kseq.h:227:3: note: in expansion of macro ‘__KSEQ_READ’ 227 | __KSEQ_READ | ^~~~~~~~~~~ readsReader.h:111:1: note: in expansion of macro ‘KSEQ_INIT’ 111 | KSEQ_INIT(gzFile, gzread) | ^~~~~~~~~ libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../config -I/<> -I/<>/src/libProgressBar-1.2.0/ -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c gkArraysBuilder.cpp -o gkArraysBuilder.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../config -I/<> -I/<>/src/libProgressBar-1.2.0/ -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gkSABuilder.lo gkSABuilder.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../config -I/<> -I/<>/src/libProgressBar-1.2.0/ -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c gkSABuilder.cpp -fPIC -DPIC -o .libs/gkSABuilder.o gkSABuilder.cpp: In function ‘int64_t gkarrays::partition(gkarrays::SolArray*, gkarrays::SolArray*, uintSA, uintSA, uintSA)’: gkSABuilder.cpp:340:24: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] 340 | while(i <= end && values->get(i) < pivotv||((pivotv==values->get(i)) &&(pivotp>sa->get(i)))); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ./readsReader.h:109, from ./gkArrays.h:115, from ./gkSABuilder.h:108, from gkSABuilder.cpp:104: ./readsReader.h: At global scope: ./kseq/kseq.h:169:14: warning: ‘int kseq_read(kseq_t*)’ defined but not used [-Wunused-function] 169 | static int kseq_read(kseq_t *seq) \ | ^~~~~~~~~ ./kseq/kseq.h:227:3: note: in expansion of macro ‘__KSEQ_READ’ 227 | __KSEQ_READ | ^~~~~~~~~~~ ./readsReader.h:111:1: note: in expansion of macro ‘KSEQ_INIT’ 111 | KSEQ_INIT(gzFile, gzread) | ^~~~~~~~~ libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../config -I/<> -I/<>/src/libProgressBar-1.2.0/ -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c gkSABuilder.cpp -o gkSABuilder.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../config -I/<> -I/<>/src/libProgressBar-1.2.0/ -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gkCFPSBuilder.lo gkCFPSBuilder.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../config -I/<> -I/<>/src/libProgressBar-1.2.0/ -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c gkCFPSBuilder.cpp -fPIC -DPIC -o .libs/gkCFPSBuilder.o In file included from readsReader.h:109, from gkArrays.h:115, from gkCFPSBuilder.cpp:110: kseq/kseq.h:169:14: warning: ‘int kseq_read(kseq_t*)’ defined but not used [-Wunused-function] 169 | static int kseq_read(kseq_t *seq) \ | ^~~~~~~~~ kseq/kseq.h:227:3: note: in expansion of macro ‘__KSEQ_READ’ 227 | __KSEQ_READ | ^~~~~~~~~~~ readsReader.h:111:1: note: in expansion of macro ‘KSEQ_INIT’ 111 | KSEQ_INIT(gzFile, gzread) | ^~~~~~~~~ libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../config -I/<> -I/<>/src/libProgressBar-1.2.0/ -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c gkCFPSBuilder.cpp -o gkCFPSBuilder.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../config -I/<> -I/<>/src/libProgressBar-1.2.0/ -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gkIFABuilder.lo gkIFABuilder.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../config -I/<> -I/<>/src/libProgressBar-1.2.0/ -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c gkIFABuilder.cpp -fPIC -DPIC -o .libs/gkIFABuilder.o In file included from ./readsReader.h:109, from ./gkArrays.h:115, from ./gkIFABuilder.h:107, from gkIFABuilder.cpp:105: ./kseq/kseq.h:169:14: warning: ‘int kseq_read(kseq_t*)’ defined but not used [-Wunused-function] 169 | static int kseq_read(kseq_t *seq) \ | ^~~~~~~~~ ./kseq/kseq.h:227:3: note: in expansion of macro ‘__KSEQ_READ’ 227 | __KSEQ_READ | ^~~~~~~~~~~ ./readsReader.h:111:1: note: in expansion of macro ‘KSEQ_INIT’ 111 | KSEQ_INIT(gzFile, gzread) | ^~~~~~~~~ libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../config -I/<> -I/<>/src/libProgressBar-1.2.0/ -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c gkIFABuilder.cpp -o gkIFABuilder.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../config -I/<> -I/<>/src/libProgressBar-1.2.0/ -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o readsReader.lo readsReader.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../config -I/<> -I/<>/src/libProgressBar-1.2.0/ -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c readsReader.cpp -fPIC -DPIC -o .libs/readsReader.o libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../config -I/<> -I/<>/src/libProgressBar-1.2.0/ -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c readsReader.cpp -o readsReader.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../config -I/<> -I/<>/src/libProgressBar-1.2.0/ -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o largebinvect.lo largebinvect.cxx libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../config -I/<> -I/<>/src/libProgressBar-1.2.0/ -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c largebinvect.cxx -fPIC -DPIC -o .libs/largebinvect.o libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../config -I/<> -I/<>/src/libProgressBar-1.2.0/ -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c largebinvect.cxx -o largebinvect.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../config -I/<> -I/<>/src/libProgressBar-1.2.0/ -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o bitvector.lo bitvector.cxx libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../config -I/<> -I/<>/src/libProgressBar-1.2.0/ -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c bitvector.cxx -fPIC -DPIC -o .libs/bitvector.o libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../config -I/<> -I/<>/src/libProgressBar-1.2.0/ -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c bitvector.cxx -o bitvector.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../config -I/<> -I/<>/src/libProgressBar-1.2.0/ -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o rank9b.lo `test -f 'sux/rank9b.cpp' || echo './'`sux/rank9b.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../config -I/<> -I/<>/src/libProgressBar-1.2.0/ -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c sux/rank9b.cpp -fPIC -DPIC -o .libs/rank9b.o sux/rank9b.cpp: In member function ‘uint64_t rank9b::rank(uint64_t)’: sux/rank9b.cpp:144:100: warning: suggest parentheses around ‘-’ inside ‘>>’ [-Wparentheses] 144 | return counts[ block ] + ( counts[ block + 1 ] >> ( offset + ( offset >> sizeof offset * 8 - 4 & 0x8 ) ) * 9 & 0x1FF ) + count( bits[ word ] & ( ( 1ULL << k % 64 ) - 1 ) ); | ~~~~~~~~~~~~~~~~~~^~~ sux/rank9b.cpp: In member function ‘uint64_t rank9b::select(uint64_t)’: sux/rank9b.cpp:207:88: warning: suggest parentheses around ‘-’ in operand of ‘&’ [-Wparentheses] 207 | const uint64_t rank_in_word = rank_in_block - ( subcounts >> ( offset_in_block - 1 & 7 ) * 9 & 0x1FF ); | ~~~~~~~~~~~~~~~~^~~ libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../config -I/<> -I/<>/src/libProgressBar-1.2.0/ -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c sux/rank9b.cpp -o rank9b.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=link i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -version-info 2:0:1 -lpthread -L/<>/src/libProgressBar-1.2.0/libProgressBar/.libs -lProgressBar -Wl,-z,relro -Wl,-z,now -o libGkArrays.la -rpath /usr/lib/i386-linux-gnu gkArrays.lo solArray.lo utils.lo gkArraysBuilder.lo gkSABuilder.lo gkCFPSBuilder.lo gkIFABuilder.lo readsReader.lo largebinvect.lo bitvector.lo rank9b.lo -lpthread -lz libtool: link: i686-linux-gnu-g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc-cross/i686-linux-gnu/11/../../../../i686-linux-gnu/lib/../lib/crti.o /usr/lib/gcc-cross/i686-linux-gnu/11/crtbeginS.o .libs/gkArrays.o .libs/solArray.o .libs/utils.o .libs/gkArraysBuilder.o .libs/gkSABuilder.o .libs/gkCFPSBuilder.o .libs/gkIFABuilder.o .libs/readsReader.o .libs/largebinvect.o .libs/bitvector.o .libs/rank9b.o -Wl,-rpath -Wl,/<>/src/libProgressBar-1.2.0/libProgressBar/.libs -Wl,-rpath -Wl,/usr/lib/i386-linux-gnu -L/<>/src/libProgressBar-1.2.0/libProgressBar/.libs /<>/src/libProgressBar-1.2.0/libProgressBar/.libs/libProgressBar.so -lpthread -lz -L/usr/lib/gcc-cross/i686-linux-gnu/11 -L/usr/lib/gcc-cross/i686-linux-gnu/11/../../../../i686-linux-gnu/lib/../lib -L/lib/i386-linux-gnu -L/lib/../lib -L/usr/lib/i386-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc-cross/i686-linux-gnu/11/../../../../i686-linux-gnu/lib -lstdc++ -lm -lc -lgcc_s 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-L/<>/src/libProgressBar-1.2.0/libProgressBar/.libs -lProgressBar -Wl,-z,relro -Wl,-z,now -o buildTables buildTables.o libGkArrays.la -lpthread -lz libtool: link: i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/buildTables buildTables.o /<>/src/.libs/libGkArrays.so -L/<>/src/libProgressBar-1.2.0/libProgressBar/.libs /<>/src/libProgressBar-1.2.0/libProgressBar/.libs/libProgressBar.so ./.libs/libGkArrays.so -lpthread -lz -Wl,-rpath -Wl,/usr/lib/i386-linux-gnu make[3]: Leaving directory '/<>/src' make[2]: Leaving directory '/<>/src' Making all in tests make[2]: Entering directory '/<>/tests' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/<>/tests' make[2]: Entering directory '/<>' cp "libGkArrays.pc" "libGkArrays-2.1.0.pc" make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' dh: command-omitted: The call to "dh_auto_test -a" was omitted due to 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'/<>/debian/tmp/usr/include/libGkArrays-2.1.0/sux' make[4]: Leaving directory '/<>/src/sux' make[3]: Leaving directory '/<>/src/sux' Making install in libProgressBar-1.2.0 make[3]: Entering directory '/<>/src/libProgressBar-1.2.0' Making install in libProgressBar make[4]: Entering directory '/<>/src/libProgressBar-1.2.0/libProgressBar' make[5]: Entering directory '/<>/src/libProgressBar-1.2.0/libProgressBar' /bin/mkdir -p '/<>/debian/tmp/usr/lib/i386-linux-gnu' /bin/bash ../libtool --mode=install /usr/bin/install -c libProgressBar.la '/<>/debian/tmp/usr/lib/i386-linux-gnu' libtool: install: /usr/bin/install -c .libs/libProgressBar.so.0.1.2 /<>/debian/tmp/usr/lib/i386-linux-gnu/libProgressBar.so.0.1.2 libtool: install: (cd /<>/debian/tmp/usr/lib/i386-linux-gnu && { ln -s -f libProgressBar.so.0.1.2 libProgressBar.so.0 || { rm -f libProgressBar.so.0 && ln -s libProgressBar.so.0.1.2 libProgressBar.so.0; }; }) libtool: install: (cd /<>/debian/tmp/usr/lib/i386-linux-gnu && { ln -s -f libProgressBar.so.0.1.2 libProgressBar.so || { rm -f libProgressBar.so && ln -s libProgressBar.so.0.1.2 libProgressBar.so; }; }) libtool: install: /usr/bin/install -c .libs/libProgressBar.lai /<>/debian/tmp/usr/lib/i386-linux-gnu/libProgressBar.la libtool: install: /usr/bin/install -c .libs/libProgressBar.a /<>/debian/tmp/usr/lib/i386-linux-gnu/libProgressBar.a libtool: install: chmod 644 /<>/debian/tmp/usr/lib/i386-linux-gnu/libProgressBar.a libtool: install: i686-linux-gnu-ranlib /<>/debian/tmp/usr/lib/i386-linux-gnu/libProgressBar.a libtool: warning: remember to run 'libtool --finish /usr/lib/i386-linux-gnu' /bin/mkdir -p '/<>/debian/tmp/usr/lib/i386-linux-gnu/libProgressBar-1.2.0/include' /usr/bin/install -c -m 644 config.h '/<>/debian/tmp/usr/lib/i386-linux-gnu/libProgressBar-1.2.0/include' /bin/mkdir -p '/<>/debian/tmp/usr/include/libProgressBar-1.2.0' /usr/bin/install -c -m 644 progressBar.h '/<>/debian/tmp/usr/include/libProgressBar-1.2.0' make install-data-hook make[6]: Entering directory '/<>/src/libProgressBar-1.2.0/libProgressBar' ln -s -f libProgressBar-1.2.0 /<>/debian/tmp/usr/include/libProgressBar make[6]: Leaving directory '/<>/src/libProgressBar-1.2.0/libProgressBar' make[5]: Leaving directory '/<>/src/libProgressBar-1.2.0/libProgressBar' make[4]: Leaving directory '/<>/src/libProgressBar-1.2.0/libProgressBar' make[4]: Entering directory '/<>/src/libProgressBar-1.2.0' make[5]: Entering directory '/<>/src/libProgressBar-1.2.0' make[5]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/<>/debian/tmp/usr/lib/i386-linux-gnu/pkgconfig' /usr/bin/install -c -m 644 libProgressBar-1.2.0.pc '/<>/debian/tmp/usr/lib/i386-linux-gnu/pkgconfig' make install-data-hook make[6]: Entering directory '/<>/src/libProgressBar-1.2.0' ln -s -f libProgressBar-1.2.0.pc /<>/debian/tmp/usr/lib/i386-linux-gnu/pkgconfig/libProgressBar.pc make[6]: Leaving directory '/<>/src/libProgressBar-1.2.0' make[5]: Leaving directory '/<>/src/libProgressBar-1.2.0' make[4]: Leaving directory '/<>/src/libProgressBar-1.2.0' make[3]: Leaving directory '/<>/src/libProgressBar-1.2.0' make[3]: Entering directory '/<>/src' make[4]: Entering directory '/<>/src' /bin/mkdir -p '/<>/debian/tmp/usr/lib/i386-linux-gnu' /bin/bash ../libtool --mode=install /usr/bin/install -c libGkArrays.la '/<>/debian/tmp/usr/lib/i386-linux-gnu' libtool: warning: relinking 'libGkArrays.la' libtool: install: (cd /<>/src; /bin/bash "/<>/libtool" --tag CXX --mode=relink i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -version-info 2:0:1 -lpthread -L/<>/src/libProgressBar-1.2.0/libProgressBar/.libs -lProgressBar -Wl,-z,relro -Wl,-z,now -o libGkArrays.la -rpath /usr/lib/i386-linux-gnu gkArrays.lo solArray.lo utils.lo gkArraysBuilder.lo gkSABuilder.lo gkCFPSBuilder.lo gkIFABuilder.lo readsReader.lo largebinvect.lo bitvector.lo rank9b.lo -lpthread -lz -inst-prefix-dir /<>/debian/tmp) libtool: relink: i686-linux-gnu-g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc-cross/i686-linux-gnu/11/../../../../i686-linux-gnu/lib/../lib/crti.o /usr/lib/gcc-cross/i686-linux-gnu/11/crtbeginS.o .libs/gkArrays.o .libs/solArray.o .libs/utils.o .libs/gkArraysBuilder.o .libs/gkSABuilder.o .libs/gkCFPSBuilder.o .libs/gkIFABuilder.o .libs/readsReader.o .libs/largebinvect.o .libs/bitvector.o .libs/rank9b.o -Wl,-rpath -Wl,/usr/lib/i386-linux-gnu -L/<>/src/libProgressBar-1.2.0/libProgressBar/.libs -L/<>/debian/tmp/usr/lib/i386-linux-gnu -L/usr/lib/i386-linux-gnu -lProgressBar -lpthread -lz -L/usr/lib/gcc-cross/i686-linux-gnu/11 -L/usr/lib/gcc-cross/i686-linux-gnu/11/../../../../i686-linux-gnu/lib/../lib -L/lib/i386-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc-cross/i686-linux-gnu/11/../../../../i686-linux-gnu/lib -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc-cross/i686-linux-gnu/11/crtendS.o /usr/lib/gcc-cross/i686-linux-gnu/11/../../../../i686-linux-gnu/lib/../lib/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,libGkArrays.so.1 -o .libs/libGkArrays.so.1.1.0 libtool: install: /usr/bin/install -c .libs/libGkArrays.so.1.1.0T /<>/debian/tmp/usr/lib/i386-linux-gnu/libGkArrays.so.1.1.0 libtool: install: (cd /<>/debian/tmp/usr/lib/i386-linux-gnu && { ln -s -f libGkArrays.so.1.1.0 libGkArrays.so.1 || { rm -f libGkArrays.so.1 && ln -s libGkArrays.so.1.1.0 libGkArrays.so.1; }; }) libtool: install: (cd /<>/debian/tmp/usr/lib/i386-linux-gnu && { ln -s -f libGkArrays.so.1.1.0 libGkArrays.so || { rm -f libGkArrays.so && ln -s libGkArrays.so.1.1.0 libGkArrays.so; }; }) libtool: install: /usr/bin/install -c .libs/libGkArrays.lai /<>/debian/tmp/usr/lib/i386-linux-gnu/libGkArrays.la libtool: install: /usr/bin/install -c .libs/libGkArrays.a /<>/debian/tmp/usr/lib/i386-linux-gnu/libGkArrays.a libtool: install: chmod 644 /<>/debian/tmp/usr/lib/i386-linux-gnu/libGkArrays.a libtool: install: i686-linux-gnu-ranlib /<>/debian/tmp/usr/lib/i386-linux-gnu/libGkArrays.a libtool: warning: remember to run 'libtool --finish /usr/lib/i386-linux-gnu' /bin/mkdir -p '/<>/debian/tmp/usr/include/libGkArrays-2.1.0' /usr/bin/install -c -m 644 gkArrays.h solArray.h gkArraysTypes.h gkArraysBuilder.h gkSABuilder.h gkCFPSBuilder.h gkIFABuilder.h readsReader.h bitvector.hxx largebinvect.hxx bitvector.cxx largebinvect.cxx binvect.hxx '/<>/debian/tmp/usr/include/libGkArrays-2.1.0' /bin/mkdir -p '/<>/debian/tmp/usr/lib/i386-linux-gnu/libGkArrays-2.1.0/include' /usr/bin/install -c -m 644 /<>/config/config.h '/<>/debian/tmp/usr/lib/i386-linux-gnu/libGkArrays-2.1.0/include' make install-data-hook make[5]: Entering directory '/<>/src' ln -s -f libGkArrays-2.1.0 /<>/debian/tmp/usr/include/libGkArrays make[5]: Leaving directory '/<>/src' make[4]: Leaving directory '/<>/src' make[3]: Leaving directory '/<>/src' make[2]: Leaving directory '/<>/src' Making install in tests make[2]: Entering directory '/<>/tests' make[3]: Entering directory '/<>/tests' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/<>/tests' make[2]: Leaving directory '/<>/tests' make[2]: Entering directory '/<>' make[3]: Entering directory '/<>' make[3]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/<>/debian/tmp/usr/lib/i386-linux-gnu/pkgconfig' /usr/bin/install -c -m 644 libGkArrays-2.1.0.pc '/<>/debian/tmp/usr/lib/i386-linux-gnu/pkgconfig' make install-data-hook make[4]: Entering directory '/<>' ln -s -f libGkArrays-2.1.0.pc /<>/debian/tmp/usr/lib/i386-linux-gnu/pkgconfig/libGkArrays.pc make[4]: Leaving directory '/<>' make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' debian/rules override_dh_install make[1]: Entering directory '/<>' dh_install d-shlibmove --commit \ --multiarch \ --devunversioned \ --exclude-la \ --override s/libProgressBar0-dev// \ --movedev debian/tmp/usr/include usr \ --movedev debian/tmp/usr/lib/i386-linux-gnu/pkgconfig usr/lib/i386-linux-gnu \ debian/tmp/usr/lib/i386-linux-gnu/libGkArrays.so Library package automatic movement utility --> zlib1g-dev package exists. set -e install -d -m 755 debian/libgkarrays-dev/usr/lib/i386-linux-gnu install -d -m 755 debian/libgkarrays1/usr/lib/i386-linux-gnu mv debian/tmp/usr/lib/i386-linux-gnu/libGkArrays.a debian/libgkarrays-dev/usr/lib/i386-linux-gnu mv debian/tmp/usr/lib/i386-linux-gnu/libGkArrays.so debian/libgkarrays-dev/usr/lib/i386-linux-gnu mv /<>/debian/tmp/usr/lib/i386-linux-gnu/libGkArrays.so.1 debian/libgkarrays1/usr/lib/i386-linux-gnu mv /<>/debian/tmp/usr/lib/i386-linux-gnu/libGkArrays.so.1.1.0 debian/libgkarrays1/usr/lib/i386-linux-gnu PKGDEV=libgkarrays-dev PKGSHL=libgkarrays1 install -d -m 755 debian/libgkarrays-dev/usr mv debian/tmp/usr/include debian/libgkarrays-dev/usr install -d -m 755 debian/libgkarrays-dev/usr/lib/i386-linux-gnu mv debian/tmp/usr/lib/i386-linux-gnu/pkgconfig debian/libgkarrays-dev/usr/lib/i386-linux-gnu # now move libProgressBar manually dh_install -p libgkarrays1 usr/lib/i386-linux-gnu/libProgressBar.so.0* usr/lib/i386-linux-gnu chmod -x debian/*/usr/lib/i386-linux-gnu/libProgressBar.so.0.* dh_install -p libgkarrays-dev usr/lib/i386-linux-gnu/libProgressBar.so usr/lib/i386-linux-gnu dh_install -p libgkarrays-dev usr/lib/i386-linux-gnu/libProgressBar.a usr/lib/i386-linux-gnu dh_install -p libgkarrays-dev usr/lib/i386-linux-gnu/libGkArrays-2.1.0/include/* usr/include/libGkArrays-2.1.0 dh_install -p libgkarrays-dev usr/lib/i386-linux-gnu/libProgressBar-1.2.0/include/* usr/include/libProgressBar-1.2.0 find debian/tmp -name "lib*.la" -delete make[1]: Leaving directory '/<>' dh_installdocs -a dh_installchangelogs -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_dwz -a dwz: debian/libgkarrays1/usr/lib/i386-linux-gnu/libProgressBar.so.0.1.2: .debug_info section not present dwz: Too few files for multifile optimization dh_dwz: warning: No dwz multifile created, but not explicitly requested either so ignoring it. dh_dwz: warning: Common issues include no debug information at all (missing -g) and dh_dwz: warning: compressed debug information (#931891). dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dpkg-gencontrol: warning: Depends field of package libgkarrays-dev: substitution variable ${shlibs:Depends} used, but is not defined dpkg-gencontrol: warning: package libgkarrays-dev: substitution variable ${devlibs:Depends} unused, but is defined dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'libgkarrays1' in '../libgkarrays1_2.1.0+dfsg-4_i386.deb'. dpkg-deb: building package 'libgkarrays1-dbgsym' in '../libgkarrays1-dbgsym_2.1.0+dfsg-4_i386.deb'. dpkg-deb: building package 'libgkarrays-dev' in '../libgkarrays-dev_2.1.0+dfsg-4_i386.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any >../libgkarrays_2.1.0+dfsg-4_i386.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2021-10-28T04:30:49Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ libgkarrays_2.1.0+dfsg-4_i386.changes: -------------------------------------- Format: 1.8 Date: Thu, 19 Nov 2020 10:41:29 +0100 Source: libgkarrays Binary: libgkarrays-dev libgkarrays1 libgkarrays1-dbgsym Built-For-Profiles: cross nocheck Architecture: i386 Version: 2.1.0+dfsg-4 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: libgkarrays-dev - library to query large collection of NGS sequences (development) libgkarrays1 - library to query large collection of NGS sequences Closes: 975072 Changes: libgkarrays (2.1.0+dfsg-4) unstable; urgency=medium . * Fix installation of shared library Closes: #975072 Checksums-Sha1: fea166b6aa74854c65ed2731d06f338b95aa4389 93156 libgkarrays-dev_2.1.0+dfsg-4_i386.deb b70f2dedf275dfcafe1e2af800fee719d3767e94 190040 libgkarrays1-dbgsym_2.1.0+dfsg-4_i386.deb b4bf834125fc486727e8ab16175ba1b846575ada 63452 libgkarrays1_2.1.0+dfsg-4_i386.deb 9a78faaa5b493fce658cfaa3acd27f395a34f53a 5688 libgkarrays_2.1.0+dfsg-4_i386.buildinfo Checksums-Sha256: 09f6d32b3b723ae8683c74302a78372f4c22f868a82da89f5c9a683e41ca99ae 93156 libgkarrays-dev_2.1.0+dfsg-4_i386.deb e5515f8a534dc7046f762256b482f2275177cf419f14b3638861e7cbe72b6978 190040 libgkarrays1-dbgsym_2.1.0+dfsg-4_i386.deb ef631b6a4c24213eb27472c36abac8bd8459ba84284d1a56a3b43333a9cd8678 63452 libgkarrays1_2.1.0+dfsg-4_i386.deb 5f9ae71eb8d8483dd7644da0a945ef8cef11d4086886dcb44373807d83feea78 5688 libgkarrays_2.1.0+dfsg-4_i386.buildinfo Files: 60f8bbfee3e2096c92fdd0ae22dde11d 93156 libdevel optional libgkarrays-dev_2.1.0+dfsg-4_i386.deb 1a489a7e462b34fd3f850f6496de6210 190040 debug optional libgkarrays1-dbgsym_2.1.0+dfsg-4_i386.deb 735e642ec0252de7e383aeceefcfd31e 63452 libs optional libgkarrays1_2.1.0+dfsg-4_i386.deb 23509696f2f6d9819a2c0f894644f7d8 5688 science optional libgkarrays_2.1.0+dfsg-4_i386.buildinfo +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: libgkarrays Binary: libgkarrays-dev libgkarrays1 libgkarrays1-dbgsym Architecture: i386 Version: 2.1.0+dfsg-4 Checksums-Md5: 60f8bbfee3e2096c92fdd0ae22dde11d 93156 libgkarrays-dev_2.1.0+dfsg-4_i386.deb 1a489a7e462b34fd3f850f6496de6210 190040 libgkarrays1-dbgsym_2.1.0+dfsg-4_i386.deb 735e642ec0252de7e383aeceefcfd31e 63452 libgkarrays1_2.1.0+dfsg-4_i386.deb Checksums-Sha1: fea166b6aa74854c65ed2731d06f338b95aa4389 93156 libgkarrays-dev_2.1.0+dfsg-4_i386.deb b70f2dedf275dfcafe1e2af800fee719d3767e94 190040 libgkarrays1-dbgsym_2.1.0+dfsg-4_i386.deb b4bf834125fc486727e8ab16175ba1b846575ada 63452 libgkarrays1_2.1.0+dfsg-4_i386.deb Checksums-Sha256: 09f6d32b3b723ae8683c74302a78372f4c22f868a82da89f5c9a683e41ca99ae 93156 libgkarrays-dev_2.1.0+dfsg-4_i386.deb e5515f8a534dc7046f762256b482f2275177cf419f14b3638861e7cbe72b6978 190040 libgkarrays1-dbgsym_2.1.0+dfsg-4_i386.deb ef631b6a4c24213eb27472c36abac8bd8459ba84284d1a56a3b43333a9cd8678 63452 libgkarrays1_2.1.0+dfsg-4_i386.deb Build-Origin: Debian Build-Architecture: arm64 Build-Date: Thu, 28 Oct 2021 04:30:48 +0000 Build-Path: /<> Installed-Build-Depends: adduser (= 3.118), apt (= 2.3.11), autoconf (= 2.71-2), automake (= 1:1.16.5-1), autopoint (= 0.21-4), autotools-dev (= 20180224.1+nmu1), base-files (= 12), base-passwd (= 3.5.52), bash (= 5.1-3+b2), binutils (= 2.37-7), binutils-aarch64-linux-gnu (= 2.37-7), binutils-common (= 2.37-7), bsdextrautils (= 2.37.2-4), bsdutils (= 1:2.37.2-4), build-essential (= 12.9), bzip2 (= 1.0.8-4), coreutils (= 8.32-4), cpp (= 4:11.2.0-2), cpp-11 (= 11.2.0-10), d-shlibs (= 0.103), dash (= 0.5.11+git20210120+802ebd4-2), debconf (= 1.5.78), debhelper (= 13.5.2), debian-archive-keyring (= 2021.1.1), debianutils (= 5.5-1), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.12.0-2), diffutils (= 1:3.7-5), dpkg (= 1.20.9), dpkg-dev (= 1.20.9), dwz (= 0.14-1), file (= 1:5.39-3), findutils (= 4.8.0-1), g++ (= 4:11.2.0-2), g++-11 (= 11.2.0-10), gcc (= 4:11.2.0-2), gcc-11 (= 11.2.0-10), gcc-11-base (= 11.2.0-10), gettext (= 0.21-4), gettext-base (= 0.21-4), gpgv (= 2.2.27-2), grep (= 3.7-1), groff-base (= 1.22.4-7), gzip (= 1.10-4), hostname (= 3.23), init-system-helpers (= 1.60), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.3.1-1), libapt-pkg6.0 (= 2.3.11), libarchive-zip-perl (= 1.68-1), libasan6 (= 11.2.0-10), libatomic1 (= 11.2.0-10), libattr1 (= 1:2.5.1-1), libaudit-common (= 1:3.0.6-1), libaudit1 (= 1:3.0.6-1), libbinutils (= 2.37-7), libblkid1 (= 2.37.2-4), libbz2-1.0 (= 1.0.8-4), libc-bin (= 2.32-4), libc-dev-bin (= 2.32-4), libc6 (= 2.32-4), libc6-dev (= 2.32-4), libcap-ng0 (= 0.7.9-2.2+b1), libcap2 (= 1:2.44-1), libcc1-0 (= 11.2.0-10), libcom-err2 (= 1.46.4-1), libcrypt-dev (= 1:4.4.25-2), libcrypt1 (= 1:4.4.25-2), libctf-nobfd0 (= 2.37-7), libctf0 (= 2.37-7), libdb5.3 (= 5.3.28+dfsg1-0.8), libdebconfclient0 (= 0.260), libdebhelper-perl (= 13.5.2), libdpkg-perl (= 1.20.9), libelf1 (= 0.185-2), libffi8 (= 3.4.2-3), libfile-stripnondeterminism-perl (= 1.12.0-2), libgcc-11-dev (= 11.2.0-10), libgcc-s1 (= 11.2.0-10), libgcrypt20 (= 1.9.4-3+b1), libgdbm-compat4 (= 1.22-1), libgdbm6 (= 1.22-1), libgmp10 (= 2:6.2.1+dfsg-2), libgnutls30 (= 3.7.2-2), libgomp1 (= 11.2.0-10), libgpg-error0 (= 1.42-3), libgssapi-krb5-2 (= 1.18.3-7), libhogweed6 (= 3.7.3-1), libhwasan0 (= 11.2.0-10), libicu67 (= 67.1-7), libidn2-0 (= 2.3.2-2), libisl23 (= 0.24-2), libitm1 (= 11.2.0-10), libk5crypto3 (= 1.18.3-7), libkeyutils1 (= 1.6.1-2), libkrb5-3 (= 1.18.3-7), libkrb5support0 (= 1.18.3-7), liblsan0 (= 11.2.0-10), liblz4-1 (= 1.9.3-2), liblzma5 (= 5.2.5-2), libmagic-mgc (= 1:5.39-3), libmagic1 (= 1:5.39-3), libmount1 (= 2.37.2-4), libmpc3 (= 1.2.1-1), libmpfr6 (= 4.1.0-3), libnettle8 (= 3.7.3-1), libnsl-dev (= 1.3.0-2), libnsl2 (= 1.3.0-2), libp11-kit0 (= 0.24.0-5), libpam-modules (= 1.4.0-10), libpam-modules-bin (= 1.4.0-10), libpam-runtime (= 1.4.0-10), libpam0g (= 1.4.0-10), libpcre2-8-0 (= 10.36-2), libpcre3 (= 2:8.39-13), libperl5.32 (= 5.32.1-6), libpipeline1 (= 1.5.3-1), libseccomp2 (= 2.5.2-2), libselinux1 (= 3.1-3), libsemanage-common (= 3.1-1), libsemanage1 (= 3.1-1+b2), libsepol1 (= 3.1-1), libsigsegv2 (= 2.13-1), libsmartcols1 (= 2.37.2-4), libssl1.1 (= 1.1.1l-1), libstdc++-11-dev (= 11.2.0-10), libstdc++6 (= 11.2.0-10), libsub-override-perl (= 0.09-2), libsystemd0 (= 249.5-1), libtasn1-6 (= 4.17.0-2), libtinfo6 (= 6.2+20210905-1), libtirpc-common (= 1.3.2-2), libtirpc-dev (= 1.3.2-2), libtirpc3 (= 1.3.2-2), libtool (= 2.4.6-15), libtsan0 (= 11.2.0-10), libubsan1 (= 11.2.0-10), libuchardet0 (= 0.0.7-1), libudev1 (= 249.5-1), libunistring2 (= 0.9.10-6), libuuid1 (= 2.37.2-4), libxml2 (= 2.9.12+dfsg-5), libxxhash0 (= 0.8.0-2), libzstd1 (= 1.4.8+dfsg-3), linux-libc-dev (= 5.14.12-1), login (= 1:4.8.1-1), lsb-base (= 11.1.0), m4 (= 1.4.18-5), make (= 4.3-4.1), man-db (= 2.9.4-2), mawk (= 1.3.4.20200120-2), ncurses-base (= 6.2+20210905-1), ncurses-bin (= 6.2+20210905-1), passwd (= 1:4.8.1-1), patch (= 2.7.6-7), perl (= 5.32.1-6), perl-base (= 5.32.1-6), perl-modules-5.32 (= 5.32.1-6), po-debconf (= 1.0.21+nmu1), rpcsvc-proto (= 1.4.2-4), sed (= 4.8-1), sensible-utils (= 0.0.17), sysvinit-utils (= 3.00-1), tar (= 1.34+dfsg-1), util-linux (= 2.37.2-4), xz-utils (= 5.2.5-2), zlib1g (= 1:1.2.11.dfsg-2), zlib1g-dev (= 1:1.2.11.dfsg-2) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="en_GB.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1605778889" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ libgkarrays-dev_2.1.0+dfsg-4_i386.deb ------------------------------------- new Debian package, version 2.0. size 93156 bytes: control archive=1608 bytes. 962 bytes, 23 lines control 2119 bytes, 27 lines md5sums Package: libgkarrays-dev Source: libgkarrays Version: 2.1.0+dfsg-4 Architecture: i386 Maintainer: Debian Med Packaging Team Installed-Size: 497 Depends: libgkarrays1 (= 2.1.0+dfsg-4) Section: libdevel Priority: optional Homepage: http://crac.gforge.inria.fr/gkarrays/ Description: library to query large collection of NGS sequences (development) Gk-arrays are provided as a simple-to-use C++ library dedicated to queries on large collection of sequences as produced by high-throughput sequencers (e.g. HiSeq 2000 from Illumina, 454 from Roche). . Gk-arrays index k-mers of reads and allows one to answer different queries on that read collection (e.g. how many reads share this k-mer? where does this k-mer occur in the read collection?). . Gk-arrays consist of a space-efficient alternative to hash tables while being similar in terms of query times. . This is the development library for libgkarrays. drwxr-xr-x root/root 0 2020-11-19 09:41 ./ drwxr-xr-x root/root 0 2020-11-19 09:41 ./usr/ drwxr-xr-x root/root 0 2020-11-19 09:41 ./usr/include/ lrwxrwxrwx root/root 0 2020-11-19 09:41 ./usr/include/libGkArrays -> libGkArrays-2.1.0 drwxr-xr-x root/root 0 2020-11-19 09:41 ./usr/include/libGkArrays-2.1.0/ -rw-r--r-- root/root 8288 2020-11-19 09:41 ./usr/include/libGkArrays-2.1.0/binvect.hxx -rw-r--r-- root/root 19920 2020-11-19 09:41 ./usr/include/libGkArrays-2.1.0/bitvector.cxx -rw-r--r-- root/root 9852 2020-11-19 09:41 ./usr/include/libGkArrays-2.1.0/bitvector.hxx -rw-r--r-- root/root 4842 2020-11-19 09:41 ./usr/include/libGkArrays-2.1.0/config.h -rw-r--r-- root/root 20802 2020-11-19 09:41 ./usr/include/libGkArrays-2.1.0/gkArrays.h -rw-r--r-- root/root 8854 2020-11-19 09:41 ./usr/include/libGkArrays-2.1.0/gkArraysBuilder.h -rw-r--r-- root/root 8559 2020-11-19 09:41 ./usr/include/libGkArrays-2.1.0/gkArraysTypes.h -rw-r--r-- root/root 9026 2020-11-19 09:41 ./usr/include/libGkArrays-2.1.0/gkCFPSBuilder.h -rw-r--r-- root/root 9283 2020-11-19 09:41 ./usr/include/libGkArrays-2.1.0/gkIFABuilder.h -rw-r--r-- root/root 12439 2020-11-19 09:41 ./usr/include/libGkArrays-2.1.0/gkSABuilder.h drwxr-xr-x root/root 0 2020-11-19 09:41 ./usr/include/libGkArrays-2.1.0/kseq/ -rw-r--r-- root/root 12765 2020-11-19 09:41 ./usr/include/libGkArrays-2.1.0/kseq/kseq.h -rw-r--r-- root/root 49375 2020-11-19 09:41 ./usr/include/libGkArrays-2.1.0/largebinvect.cxx -rw-r--r-- root/root 14569 2020-11-19 09:41 ./usr/include/libGkArrays-2.1.0/largebinvect.hxx -rw-r--r-- root/root 16651 2020-11-19 09:41 ./usr/include/libGkArrays-2.1.0/readsReader.h -rw-r--r-- root/root 12355 2020-11-19 09:41 ./usr/include/libGkArrays-2.1.0/solArray.h drwxr-xr-x root/root 0 2020-11-19 09:41 ./usr/include/libGkArrays-2.1.0/sux/ -rw-r--r-- root/root 1661 2020-11-19 09:41 ./usr/include/libGkArrays-2.1.0/sux/macros.h -rw-r--r-- root/root 605 2020-11-19 09:41 ./usr/include/libGkArrays-2.1.0/sux/popcount.h -rw-r--r-- root/root 3115 2020-11-19 09:41 ./usr/include/libGkArrays-2.1.0/sux/rank9b.h lrwxrwxrwx root/root 0 2020-11-19 09:41 ./usr/include/libProgressBar -> libProgressBar-1.2.0 drwxr-xr-x root/root 0 2020-11-19 09:41 ./usr/include/libProgressBar-1.2.0/ -rw-r--r-- root/root 4084 2020-11-19 09:41 ./usr/include/libProgressBar-1.2.0/config.h -rw-r--r-- root/root 8886 2020-11-19 09:41 ./usr/include/libProgressBar-1.2.0/progressBar.h drwxr-xr-x root/root 0 2020-11-19 09:41 ./usr/lib/ drwxr-xr-x root/root 0 2020-11-19 09:41 ./usr/lib/i386-linux-gnu/ -rw-r--r-- root/root 187050 2020-11-19 09:41 ./usr/lib/i386-linux-gnu/libGkArrays.a lrwxrwxrwx root/root 0 2020-11-19 09:41 ./usr/lib/i386-linux-gnu/libGkArrays.so -> libGkArrays.so.1.1.0 -rw-r--r-- root/root 15680 2020-11-19 09:41 ./usr/lib/i386-linux-gnu/libProgressBar.a lrwxrwxrwx root/root 0 2020-11-19 09:41 ./usr/lib/i386-linux-gnu/libProgressBar.so -> libProgressBar.so.0.1.2 drwxr-xr-x root/root 0 2020-11-19 09:41 ./usr/lib/i386-linux-gnu/pkgconfig/ -rw-r--r-- root/root 242 2020-11-19 09:41 ./usr/lib/i386-linux-gnu/pkgconfig/libGkArrays-2.1.0.pc lrwxrwxrwx root/root 0 2020-11-19 09:41 ./usr/lib/i386-linux-gnu/pkgconfig/libGkArrays.pc -> libGkArrays-2.1.0.pc -rw-r--r-- root/root 256 2020-11-19 09:41 ./usr/lib/i386-linux-gnu/pkgconfig/libProgressBar-1.2.0.pc lrwxrwxrwx root/root 0 2020-11-19 09:41 ./usr/lib/i386-linux-gnu/pkgconfig/libProgressBar.pc -> libProgressBar-1.2.0.pc drwxr-xr-x root/root 0 2020-11-19 09:41 ./usr/share/ drwxr-xr-x root/root 0 2020-11-19 09:41 ./usr/share/doc/ drwxr-xr-x root/root 0 2020-11-19 09:41 ./usr/share/doc/libgkarrays-dev/ -rw-r--r-- root/root 456 2020-11-19 09:41 ./usr/share/doc/libgkarrays-dev/changelog.Debian.gz -rw-r--r-- root/root 5768 2013-12-11 14:49 ./usr/share/doc/libgkarrays-dev/changelog.gz -rw-r--r-- root/root 26908 2020-11-19 09:41 ./usr/share/doc/libgkarrays-dev/copyright libgkarrays1-dbgsym_2.1.0+dfsg-4_i386.deb ----------------------------------------- new Debian package, version 2.0. size 190040 bytes: control archive=604 bytes. 439 bytes, 12 lines control 212 bytes, 2 lines md5sums Package: libgkarrays1-dbgsym Source: libgkarrays Version: 2.1.0+dfsg-4 Auto-Built-Package: debug-symbols Architecture: i386 Maintainer: Debian Med Packaging Team Installed-Size: 218 Depends: libgkarrays1 (= 2.1.0+dfsg-4) Section: debug Priority: optional Description: debug symbols for libgkarrays1 Build-Ids: 4d678e4c352b0869ce2c7ac3406168a253837b73 fbb554fe9dc18380edc8a838c419dcefcc34aa5e drwxr-xr-x root/root 0 2020-11-19 09:41 ./ drwxr-xr-x root/root 0 2020-11-19 09:41 ./usr/ drwxr-xr-x root/root 0 2020-11-19 09:41 ./usr/lib/ drwxr-xr-x root/root 0 2020-11-19 09:41 ./usr/lib/debug/ drwxr-xr-x root/root 0 2020-11-19 09:41 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2020-11-19 09:41 ./usr/lib/debug/.build-id/4d/ -rw-r--r-- root/root 6384 2020-11-19 09:41 ./usr/lib/debug/.build-id/4d/678e4c352b0869ce2c7ac3406168a253837b73.debug drwxr-xr-x root/root 0 2020-11-19 09:41 ./usr/lib/debug/.build-id/fb/ -rw-r--r-- root/root 203868 2020-11-19 09:41 ./usr/lib/debug/.build-id/fb/b554fe9dc18380edc8a838c419dcefcc34aa5e.debug drwxr-xr-x root/root 0 2020-11-19 09:41 ./usr/share/ drwxr-xr-x root/root 0 2020-11-19 09:41 ./usr/share/doc/ lrwxrwxrwx root/root 0 2020-11-19 09:41 ./usr/share/doc/libgkarrays1-dbgsym -> libgkarrays1 libgkarrays1_2.1.0+dfsg-4_i386.deb ---------------------------------- new Debian package, version 2.0. size 63452 bytes: control archive=1116 bytes. 935 bytes, 21 lines control 385 bytes, 5 lines md5sums 89 bytes, 2 lines shlibs 67 bytes, 2 lines triggers Package: libgkarrays1 Source: libgkarrays Version: 2.1.0+dfsg-4 Architecture: i386 Maintainer: Debian Med Packaging Team Installed-Size: 178 Depends: libc6 (>= 2.4), libgcc-s1 (>= 3.0), libstdc++6 (>= 5.2), zlib1g (>= 1:1.1.4) Section: libs Priority: optional Homepage: http://crac.gforge.inria.fr/gkarrays/ Description: library to query large collection of NGS sequences Gk-arrays are provided as a simple-to-use C++ library dedicated to queries on large collection of sequences as produced by high-throughput sequencers (e.g. HiSeq 2000 from Illumina, 454 from Roche). . Gk-arrays index k-mers of reads and allows one to answer different queries on that read collection (e.g. how many reads share this k-mer? where does this k-mer occur in the read collection?). . Gk-arrays consist of a space-efficient alternative to hash tables while being similar in terms of query times. drwxr-xr-x root/root 0 2020-11-19 09:41 ./ drwxr-xr-x root/root 0 2020-11-19 09:41 ./usr/ drwxr-xr-x root/root 0 2020-11-19 09:41 ./usr/lib/ drwxr-xr-x root/root 0 2020-11-19 09:41 ./usr/lib/i386-linux-gnu/ lrwxrwxrwx root/root 0 2020-11-19 09:41 ./usr/lib/i386-linux-gnu/libGkArrays.so.1 -> libGkArrays.so.1.1.0 -rw-r--r-- root/root 112048 2020-11-19 09:41 ./usr/lib/i386-linux-gnu/libGkArrays.so.1.1.0 lrwxrwxrwx root/root 0 2020-11-19 09:41 ./usr/lib/i386-linux-gnu/libProgressBar.so.0 -> libProgressBar.so.0.1.2 -rw-r--r-- root/root 21860 2020-11-19 09:41 ./usr/lib/i386-linux-gnu/libProgressBar.so.0.1.2 drwxr-xr-x root/root 0 2020-11-19 09:41 ./usr/share/ drwxr-xr-x root/root 0 2020-11-19 09:41 ./usr/share/doc/ drwxr-xr-x root/root 0 2020-11-19 09:41 ./usr/share/doc/libgkarrays1/ -rw-r--r-- root/root 456 2020-11-19 09:41 ./usr/share/doc/libgkarrays1/changelog.Debian.gz -rw-r--r-- root/root 5768 2013-12-11 14:49 ./usr/share/doc/libgkarrays1/changelog.gz -rw-r--r-- root/root 26908 2020-11-19 09:41 ./usr/share/doc/libgkarrays1/copyright lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:arm64 Filtered Build-Depends: lintian:arm64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/apt_archive/sbuild-build-depends-lintian-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [963 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [547 B] Get:5 copy:/<>/apt_archive ./ Packages [635 B] Fetched 2145 B in 0s (50.4 kB/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: diffstat gpg gpgconf libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libcapture-tiny-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libexception-class-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfont-ttf-perl libhtml-html5-entities-perl libimport-into-perl libio-interactive-perl libio-prompt-tiny-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-moreutils-perl liblist-moreutils-xs-perl liblist-someutils-perl liblist-utilsby-perl liblzo2-2 libmarkdown2 libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl libreadline8 librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libsqlite3-0 libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libterm-readkey-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libtype-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libyaml-0-2 libyaml-libyaml-perl lintian lzip lzop patchutils readline-common t1utils unzip Suggested packages: libxml-parser-perl libscalar-number-perl libbareword-filehandles-perl libindirect-perl libmultidimensional-perl libdevel-lexalias-perl libbusiness-isbn-perl libwww-perl binutils-multiarch libtext-template-perl readline-doc zip Recommended packages: gnupg liblist-someutils-xs-perl libpackage-stash-xs-perl libref-util-perl libtype-tiny-xs-perl The following NEW packages will be installed: diffstat gpg gpgconf libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libcapture-tiny-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libexception-class-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfont-ttf-perl libhtml-html5-entities-perl libimport-into-perl libio-interactive-perl libio-prompt-tiny-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-moreutils-perl liblist-moreutils-xs-perl liblist-someutils-perl liblist-utilsby-perl liblzo2-2 libmarkdown2 libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl libreadline8 librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libsqlite3-0 libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libterm-readkey-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libtype-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libyaml-0-2 libyaml-libyaml-perl lintian lzip lzop patchutils readline-common sbuild-build-depends-lintian-dummy:i386 t1utils unzip 0 upgraded, 97 newly installed, 0 to remove and 0 not upgraded. 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sid/main arm64 libnamespace-clean-perl all 0.27-1 [17.3 kB] Get:73 http://mirror.einval.org/debian sid/main arm64 libpath-tiny-perl all 0.118-1 [53.5 kB] Get:74 http://mirror.einval.org/debian sid/main arm64 libperlio-gzip-perl arm64 0.19-1+b7 [17.0 kB] Get:75 http://mirror.einval.org/debian sid/main arm64 libperlio-utf8-strict-perl arm64 0.008-1+b1 [11.8 kB] Get:76 http://mirror.einval.org/debian sid/main arm64 libproc-processtable-perl arm64 0.634-1 [46.1 kB] Get:77 http://mirror.einval.org/debian sid/main arm64 libsereal-decoder-perl arm64 4.018+ds-1+b1 [95.3 kB] Get:78 http://mirror.einval.org/debian sid/main arm64 libsereal-encoder-perl arm64 4.018+ds-1+b1 [98.3 kB] Get:79 http://mirror.einval.org/debian sid/main arm64 libsort-versions-perl all 1.62-1 [11.0 kB] Get:80 http://mirror.einval.org/debian sid/main arm64 libterm-readkey-perl arm64 2.38-1+b2 [27.3 kB] Get:81 http://mirror.einval.org/debian sid/main arm64 libtext-levenshteinxs-perl arm64 0.03-4+b8 [8680 B] Get:82 http://mirror.einval.org/debian sid/main arm64 libtext-markdown-discount-perl arm64 0.13-1 [13.1 kB] Get:83 http://mirror.einval.org/debian sid/main arm64 libtext-xslate-perl arm64 3.5.8-1+b1 [195 kB] Get:84 http://mirror.einval.org/debian sid/main arm64 libtime-duration-perl all 1.21-1 [13.7 kB] Get:85 http://mirror.einval.org/debian sid/main arm64 libtime-moment-perl arm64 0.44-1+b3 [75.1 kB] Get:86 http://mirror.einval.org/debian sid/main arm64 libtimedate-perl all 2.3300-2 [39.3 kB] Get:87 http://mirror.einval.org/debian sid/main arm64 libtype-tiny-perl all 1.012004-1 [351 kB] Get:88 http://mirror.einval.org/debian sid/main arm64 libunicode-utf8-perl arm64 0.62-1+b2 [19.8 kB] Get:89 http://mirror.einval.org/debian sid/main arm64 liburi-perl all 5.10-1 [91.0 kB] Get:90 http://mirror.einval.org/debian sid/main arm64 libyaml-0-2 arm64 0.2.2-1 [45.1 kB] Get:91 http://mirror.einval.org/debian sid/main arm64 libyaml-libyaml-perl arm64 0.83+ds-1 [34.2 kB] Get:92 http://mirror.einval.org/debian sid/main arm64 lzip arm64 1.22-4 [84.6 kB] Get:93 http://mirror.einval.org/debian sid/main arm64 lzop arm64 1.04-2 [82.8 kB] Get:94 http://mirror.einval.org/debian sid/main arm64 patchutils arm64 0.4.2-1 [73.5 kB] Get:95 http://mirror.einval.org/debian sid/main arm64 t1utils arm64 1.41-4 [59.8 kB] Get:96 http://mirror.einval.org/debian sid/main arm64 unzip arm64 6.0-26 [165 kB] Get:97 http://mirror.einval.org/debian sid/main arm64 lintian all 2.110.0 [1338 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 7667 kB in 0s (38.6 MB/s) Selecting previously unselected package readline-common. (Reading database ... 18513 files and directories currently installed.) Preparing to unpack .../00-readline-common_8.1-2_all.deb ... Unpacking readline-common (8.1-2) ... Selecting previously unselected package libreadline8:arm64. Preparing to unpack .../01-libreadline8_8.1-2_arm64.deb ... Unpacking libreadline8:arm64 (8.1-2) ... Selecting previously unselected package diffstat. Preparing to unpack .../02-diffstat_1.64-1_arm64.deb ... Unpacking diffstat (1.64-1) ... Selecting previously unselected package libassuan0:arm64. Preparing to unpack .../03-libassuan0_2.5.5-1_arm64.deb ... Unpacking libassuan0:arm64 (2.5.5-1) ... Selecting previously unselected package gpgconf. Preparing to unpack .../04-gpgconf_2.2.27-2_arm64.deb ... Unpacking gpgconf (2.2.27-2) ... Selecting previously unselected package libsqlite3-0:arm64. Preparing to unpack .../05-libsqlite3-0_3.36.0-2_arm64.deb ... Unpacking libsqlite3-0:arm64 (3.36.0-2) ... Selecting previously unselected package gpg. 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I: Lintian run was successful. +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: arm64 Build Profiles: cross nocheck Build Type: any Build-Space: 19176 Build-Time: 114 Distribution: unstable Foreign Architectures: i386 Host Architecture: i386 Install-Time: 34 Job: libgkarrays_2.1.0+dfsg-4 Lintian: pass Machine Architecture: arm64 Package: libgkarrays Package-Time: 185 Source-Version: 2.1.0+dfsg-4 Space: 19176 Status: successful Version: 2.1.0+dfsg-4 -------------------------------------------------------------------------------- Finished at 2021-10-28T04:30:49Z Build needed 00:03:05, 19176k disk space