sbuild (Debian sbuild) 0.73.0 (23 Dec 2016) on gcc131.bak.milne.osuosl.org +==============================================================================+ | libmaus2 2.0.611-1 (armel) Sun, 04 Aug 2019 19:28:04 +0000 | +==============================================================================+ Package: libmaus2 Version: 2.0.611-1 Source Version: 2.0.611-1 Distribution: unstable Machine Architecture: amd64 Host Architecture: armel Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/unstable-amd64-sbuild-3dc4249d-e347-490a-a7ad-a69ca04bb844' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://debian.oregonstate.edu/debian unstable InRelease [149 kB] Get:2 http://debian.oregonstate.edu/debian unstable/main Sources.diff/Index [27.9 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 Packages.diff/Index [27.9 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main Sources 2019-08-04-0831.20.pdiff [9188 B] Get:5 http://debian.oregonstate.edu/debian unstable/main Sources 2019-08-04-1436.39.pdiff [41.9 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main Sources 2019-08-04-1436.39.pdiff [41.9 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-08-04-0831.20.pdiff [25.2 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-08-04-1436.39.pdiff [21.5 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-08-04-1436.39.pdiff [21.5 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main armel Packages [8061 kB] Fetched 8363 kB in 2s (4288 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'libmaus2' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/libmaus2.git Please use: git clone https://salsa.debian.org/med-team/libmaus2.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 2965 kB of source archives. Get:1 http://debian.oregonstate.edu/debian unstable/main libmaus2 2.0.611-1 (dsc) [2054 B] Get:2 http://debian.oregonstate.edu/debian unstable/main libmaus2 2.0.611-1 (tar) [2958 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main libmaus2 2.0.611-1 (diff) [4628 B] Fetched 2965 kB in 0s (44.6 MB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/libmaus2-idSRLS/libmaus2-2.0.611' with '<>' I: NOTICE: Log filtering will replace 'build/libmaus2-idSRLS' with '<>' +------------------------------------------------------------------------------+ | Install crossbuild-essential | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: build-essential:amd64, fakeroot:amd64, crossbuild-essential-armel:amd64 Filtered Build-Depends: build-essential:amd64, fakeroot:amd64, crossbuild-essential-armel:amd64 dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-9Qc95f/apt_archive/sbuild-build-depends-core-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy dpkg-scanpackages: info: Wrote 1 entries to output Packages file. Ign:1 copy:/<>/resolver-9Qc95f/apt_archive ./ InRelease Get:2 copy:/<>/resolver-9Qc95f/apt_archive ./ Release [957 B] Ign:3 copy:/<>/resolver-9Qc95f/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-9Qc95f/apt_archive ./ Sources [359 B] Get:5 copy:/<>/resolver-9Qc95f/apt_archive ./ Packages [451 B] Fetched 1767 B in 0s (88.6 kB/s) Reading package lists... Reading package lists... Install core build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: binutils-arm-linux-gnueabi cpp-8-arm-linux-gnueabi cpp-arm-linux-gnueabi cross-config crossbuild-essential-armel dpkg-cross file g++-8-arm-linux-gnueabi g++-arm-linux-gnueabi gcc-8-arm-linux-gnueabi gcc-8-arm-linux-gnueabi-base gcc-8-cross-base gcc-9-cross-base gcc-arm-linux-gnueabi libasan5-armel-cross libatomic1-armel-cross libc6-armel-cross libc6-dev-armel-cross libconfig-auto-perl libconfig-inifiles-perl libdebian-dpkgcross-perl libfile-homedir-perl libfile-which-perl libgcc-8-dev-armel-cross libgcc1-armel-cross libgomp1-armel-cross libicu63 libio-string-perl liblocale-gettext-perl libmagic-mgc libmagic1 libstdc++-8-dev-armel-cross libstdc++6-armel-cross libubsan1-armel-cross libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev-armel-cross sensible-utils ucf Suggested packages: binutils-doc gcc-8-locales cpp-doc binutils-multiarch gcc-8-doc libstdc++6-8-dbg-armel-cross libgcc1-dbg-armel-cross libgomp1-dbg-armel-cross libitm1-dbg-armel-cross libatomic1-dbg-armel-cross libasan5-dbg-armel-cross liblsan0-dbg-armel-cross libtsan0-dbg-armel-cross libubsan1-dbg-armel-cross libmpx2-dbg-armel-cross libquadmath0-dbg-armel-cross manpages-dev autoconf automake libtool flex bison gdb-arm-linux-gnueabi gcc-doc libyaml-shell-perl Recommended packages: libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl The following NEW packages will be installed: binutils-arm-linux-gnueabi cpp-8-arm-linux-gnueabi cpp-arm-linux-gnueabi cross-config crossbuild-essential-armel dpkg-cross file g++-8-arm-linux-gnueabi g++-arm-linux-gnueabi gcc-8-arm-linux-gnueabi gcc-8-arm-linux-gnueabi-base gcc-8-cross-base gcc-9-cross-base gcc-arm-linux-gnueabi libasan5-armel-cross libatomic1-armel-cross libc6-armel-cross libc6-dev-armel-cross libconfig-auto-perl libconfig-inifiles-perl libdebian-dpkgcross-perl libfile-homedir-perl libfile-which-perl libgcc-8-dev-armel-cross libgcc1-armel-cross libgomp1-armel-cross libicu63 libio-string-perl liblocale-gettext-perl libmagic-mgc libmagic1 libstdc++-8-dev-armel-cross libstdc++6-armel-cross libubsan1-armel-cross libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev-armel-cross sbuild-build-depends-core-dummy:armel sensible-utils ucf 0 upgraded, 45 newly installed, 0 to remove and 0 not upgraded. Need to get 42.3 MB of archives. After this operation, 155 MB of additional disk space will be used. Get:1 copy:/<>/resolver-9Qc95f/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [872 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-3+b4 [18.9 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 sensible-utils all 0.0.12 [15.8 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic-mgc amd64 1:5.37-5 [253 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic1 amd64 1:5.37-5 [119 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 file amd64 1:5.37-5 [67.1 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 ucf all 3.0038+nmu1 [69.0 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 binutils-arm-linux-gnueabi amd64 2.32.51.20190727-1 [2913 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-8-arm-linux-gnueabi-base amd64 8.3.0-19cross1 [192 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-8-arm-linux-gnueabi amd64 8.3.0-19cross1 [6548 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-arm-linux-gnueabi amd64 4:8.3.0-1 [16.5 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 cross-config all 2.6.15-3 [39.9 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-8-cross-base all 8.3.0-19cross1 [187 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-cross-base all 9.1.0-8cross1 [185 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-armel-cross all 2.28-10cross3 [1190 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc1-armel-cross all 1:9.1.0-8cross1 [39.1 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 libgomp1-armel-cross all 9.1.0-8cross1 [74.8 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libatomic1-armel-cross all 9.1.0-8cross1 [8936 B] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 libasan5-armel-cross all 9.1.0-8cross1 [341 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++6-armel-cross all 9.1.0-8cross1 [375 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 libubsan1-armel-cross all 9.1.0-8cross1 [110 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-8-dev-armel-cross all 8.3.0-19cross1 [602 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-8-arm-linux-gnueabi amd64 8.3.0-19cross1 [6981 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-arm-linux-gnueabi amd64 4:8.3.0-1 [1460 B] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 linux-libc-dev-armel-cross all 4.19.37-5cross3 [1255 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev-armel-cross all 2.28-10cross3 [2183 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-8-dev-armel-cross all 8.3.0-19cross1 [1548 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 g++-8-arm-linux-gnueabi amd64 8.3.0-19cross1 [7128 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 g++-arm-linux-gnueabi amd64 4:8.3.0-1 [1176 B] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-inifiles-perl all 3.000001-1 [51.9 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 libio-string-perl all 1.08-3 [12.3 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 libicu63 amd64 63.2-2 [8301 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 libxml2 amd64 2.9.4+dfsg1-7+b3 [687 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-1 [14.8 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-base-perl all 1.09-1 [20.4 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-perl all 1.02+dfsg-1 [59.0 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-libxml-perl amd64 2.0134+dfsg-1 [344 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-simple-perl all 2.25-1 [72.0 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-perl all 1.29-1 [67.4 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-auto-perl all 0.44-1 [19.5 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-which-perl all 1.23-1 [16.6 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-homedir-perl all 1.004-1 [42.7 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 libdebian-dpkgcross-perl all 2.6.15-3 [38.7 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-cross all 2.6.15-3 [49.3 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 crossbuild-essential-armel all 12.6 [6568 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 42.3 MB in 1s (57.2 MB/s) Selecting previously unselected package liblocale-gettext-perl. (Reading database ... 11963 files and directories currently installed.) Preparing to unpack .../00-liblocale-gettext-perl_1.07-3+b4_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-3+b4) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.12_all.deb ... Unpacking sensible-utils (0.0.12) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../02-libmagic-mgc_1%3a5.37-5_amd64.deb ... Unpacking libmagic-mgc (1:5.37-5) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../03-libmagic1_1%3a5.37-5_amd64.deb ... Unpacking libmagic1:amd64 (1:5.37-5) ... Selecting previously unselected package file. Preparing to unpack .../04-file_1%3a5.37-5_amd64.deb ... Unpacking file (1:5.37-5) ... Selecting previously unselected package ucf. Preparing to unpack .../05-ucf_3.0038+nmu1_all.deb ... Moving old data out of the way Unpacking ucf (3.0038+nmu1) ... 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Setting up linux-libc-dev-armel-cross (4.19.37-5cross3) ... Setting up libxml-sax-base-perl (1.09-1) ... Setting up libio-string-perl (1.08-3) ... Setting up cross-config (2.6.15-3) ... Setting up cpp-arm-linux-gnueabi (4:8.3.0-1) ... Setting up gcc-9-cross-base (9.1.0-8cross1) ... Setting up libc6-armel-cross (2.28-10cross3) ... Setting up sensible-utils (0.0.12) ... Setting up libc6-dev-armel-cross (2.28-10cross3) ... Setting up libfile-homedir-perl (1.004-1) ... Setting up libxml2:amd64 (2.9.4+dfsg1-7+b3) ... Setting up liblocale-gettext-perl (1.07-3+b4) ... Setting up libgomp1-armel-cross (9.1.0-8cross1) ... Setting up libatomic1-armel-cross (9.1.0-8cross1) ... Setting up libgcc1-armel-cross (1:9.1.0-8cross1) ... Setting up libasan5-armel-cross (9.1.0-8cross1) ... Setting up ucf (3.0038+nmu1) ... Setting up libstdc++6-armel-cross (9.1.0-8cross1) ... Setting up libxml-sax-perl (1.02+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libubsan1-armel-cross (9.1.0-8cross1) ... Setting up libxml-libxml-perl (2.0134+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libgcc-8-dev-armel-cross (8.3.0-19cross1) ... Setting up libxml-simple-perl (2.25-1) ... Setting up gcc-8-arm-linux-gnueabi (8.3.0-19cross1) ... Setting up libstdc++-8-dev-armel-cross (8.3.0-19cross1) ... Setting up libconfig-auto-perl (0.44-1) ... Setting up gcc-arm-linux-gnueabi (4:8.3.0-1) ... Setting up libdebian-dpkgcross-perl (2.6.15-3) ... Setting up g++-8-arm-linux-gnueabi (8.3.0-19cross1) ... Setting up g++-arm-linux-gnueabi (4:8.3.0-1) ... Setting up dpkg-cross (2.6.15-3) ... Setting up crossbuild-essential-armel (12.6) ... Setting up sbuild-build-depends-core-dummy:armel (0.invalid.0) ... Processing triggers for libc-bin (2.28-10) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (armel included in any) Setup apt archive ----------------- dpkg-deb: building package 'sbuild-build-depends-essential-dummy' in '/<>/resolver-9Qc95f/apt_archive/sbuild-build-depends-essential-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-essential-dummy dpkg-scanpackages: info: Wrote 2 entries to output Packages file. Ign:1 copy:/<>/resolver-9Qc95f/apt_archive ./ InRelease Get:2 copy:/<>/resolver-9Qc95f/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-9Qc95f/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-9Qc95f/apt_archive ./ Sources [481 B] Get:5 copy:/<>/resolver-9Qc95f/apt_archive ./ Packages [570 B] Fetched 2014 B in 0s (97.2 kB/s) Reading package lists... Reading package lists... Install essential build dependencies (apt-based resolver) --------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-essential-dummy:armel 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 840 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-9Qc95f/apt_archive ./ sbuild-build-depends-essential-dummy 0.invalid.0 [840 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 840 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-essential-dummy:armel. (Reading database ... 15014 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-essential-dummy_0.invalid.0_armel.deb ... Unpacking sbuild-build-depends-essential-dummy:armel (0.invalid.0) ... Setting up sbuild-build-depends-essential-dummy:armel (0.invalid.0) ... +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: libc-dev, libstdc++-dev, debhelper (>= 12~), d-shlibs, pkg-config, zlib1g-dev Filtered Build-Depends: libc-dev, libstdc++-dev, debhelper (>= 12~), d-shlibs, pkg-config, zlib1g-dev dpkg-deb: building package 'sbuild-build-depends-libmaus2-dummy' in '/<>/resolver-9Qc95f/apt_archive/sbuild-build-depends-libmaus2-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-essential-dummy sbuild-build-depends-libmaus2-dummy dpkg-scanpackages: info: Wrote 3 entries to output Packages file. Ign:1 copy:/<>/resolver-9Qc95f/apt_archive ./ InRelease Get:2 copy:/<>/resolver-9Qc95f/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-9Qc95f/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-9Qc95f/apt_archive ./ Sources [657 B] Get:5 copy:/<>/resolver-9Qc95f/apt_archive ./ Packages [741 B] Fetched 2361 B in 0s (114 kB/s) Reading package lists... Reading package lists... Install libmaus2 build dependencies (apt-based resolver) -------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils d-shlibs debhelper dh-autoreconf dh-strip-nondeterminism dwz gcc-8-base:armel gcc-9-base:armel gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan5:armel libatomic1:armel libbsd0 libc6:armel libc6-dev:armel libcroco3 libelf1 libfile-stripnondeterminism-perl libgcc-8-dev:armel libgcc1:armel libglib2.0-0 libgomp1:armel libncurses6 libpipeline1 libsigsegv2 libstdc++-8-dev:armel libstdc++6:armel libsub-override-perl libtool libubsan1:armel libuchardet0 linux-libc-dev:armel m4 man-db pkg-config po-debconf zlib1g:armel zlib1g-dev:armel Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff glibc-doc:armel libc-l10n:armel locales:armel manpages-dev:armel libstdc++-8-doc:armel libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libidn2-0:armel libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libgpm2 libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils d-shlibs debhelper dh-autoreconf dh-strip-nondeterminism dwz gcc-8-base:armel gcc-9-base:armel gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan5:armel libatomic1:armel libbsd0 libc6:armel libc6-dev:armel libcroco3 libelf1 libfile-stripnondeterminism-perl libgcc-8-dev:armel libgcc1:armel libglib2.0-0 libgomp1:armel libncurses6 libpipeline1 libsigsegv2 libstdc++-8-dev:armel libstdc++6:armel libsub-override-perl libtool libubsan1:armel libuchardet0 linux-libc-dev:armel m4 man-db pkg-config po-debconf sbuild-build-depends-libmaus2-dummy:armel zlib1g:armel zlib1g-dev:armel 0 upgraded, 46 newly installed, 0 to remove and 0 not upgraded. Need to get 19.3 MB of archives. After this operation, 84.5 MB of additional disk space will be used. Get:1 copy:/<>/resolver-9Qc95f/apt_archive ./ sbuild-build-depends-libmaus2-dummy 0.invalid.0 [900 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 libbsd0 amd64 0.9.1-2 [99.5 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 bsdmainutils amd64 11.1.2+b1 [191 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 libuchardet0 amd64 0.0.6-3 [64.9 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 groff-base amd64 1.22.4-3 [916 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 libpipeline1 amd64 1.5.1-2 [31.2 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 man-db amd64 2.8.6-1 [1294 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main armel gcc-9-base armel 9.1.0-10 [190 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 gettext-base amd64 0.19.8.1-9 [123 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 m4 amd64 1.4.18-2 [203 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 autoconf all 2.69-11 [341 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 automake all 1:1.16.1-4 [771 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 autopoint all 0.19.8.1-9 [434 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 d-shlibs all 0.86 [17.3 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 libtool all 2.4.6-10 [547 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 dh-autoreconf all 19 [16.9 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 libarchive-zip-perl all 1.64-1 [96.8 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-override-perl all 0.09-2 [10.2 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.4.0-1 [21.9 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 dh-strip-nondeterminism all 1.4.0-1 [14.0 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 libelf1 amd64 0.176-1.1 [161 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 dwz amd64 0.12.20190723-1 [80.6 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 libglib2.0-0 amd64 2.60.6-1 [1294 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 libcroco3 amd64 0.6.12-3 [145 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 libncurses6 amd64 6.1+20190713-2 [102 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 gettext amd64 0.19.8.1-9 [1303 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 po-debconf all 1.0.21 [248 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 debhelper all 12.2.3 [1026 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main armel gcc-8-base armel 8.3.0-19 [192 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main armel libgcc1 armel 1:9.1.0-10 [39.0 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main armel libc6 armel 2.28-10 [2399 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main armel libasan5 armel 9.1.0-10 [347 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main armel libatomic1 armel 9.1.0-10 [9088 B] Get:37 http://debian.oregonstate.edu/debian unstable/main armel linux-libc-dev armel 4.19.37-6 [1168 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main armel libc6-dev armel 2.28-10 [2185 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main armel libgomp1 armel 9.1.0-10 [76.7 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main armel libstdc++6 armel 9.1.0-10 [414 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main armel libubsan1 armel 9.1.0-10 [111 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main armel libgcc-8-dev armel 8.3.0-19 [601 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main armel libstdc++-8-dev armel 8.3.0-19 [1550 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 pkg-config amd64 0.29-6 [63.5 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main armel zlib1g armel 1:1.2.11.dfsg-1 [86.5 kB] Get:46 http://debian.oregonstate.edu/debian unstable/main armel zlib1g-dev armel 1:1.2.11.dfsg-1 [206 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 19.3 MB in 0s (71.8 MB/s) Selecting previously unselected package libbsd0:amd64. (Reading database ... 15014 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.9.1-2_amd64.deb ... Unpacking libbsd0:amd64 (0.9.1-2) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2+b1_amd64.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../02-libuchardet0_0.0.6-3_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../03-groff-base_1.22.4-3_amd64.deb ... Unpacking groff-base (1.22.4-3) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../04-libpipeline1_1.5.1-2_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../05-man-db_2.8.6-1_amd64.deb ... Unpacking man-db (2.8.6-1) ... Selecting previously unselected package gcc-9-base:armel. Preparing to unpack .../06-gcc-9-base_9.1.0-10_armel.deb ... Unpacking gcc-9-base:armel (9.1.0-10) ... Selecting previously unselected package gettext-base. Preparing to unpack .../07-gettext-base_0.19.8.1-9_amd64.deb ... Unpacking gettext-base (0.19.8.1-9) ... Selecting previously unselected package libsigsegv2:amd64. Preparing to unpack .../08-libsigsegv2_2.12-2_amd64.deb ... Unpacking libsigsegv2:amd64 (2.12-2) ... Selecting previously unselected package m4. Preparing to unpack .../09-m4_1.4.18-2_amd64.deb ... Unpacking m4 (1.4.18-2) ... Selecting previously unselected package autoconf. Preparing to unpack .../10-autoconf_2.69-11_all.deb ... Unpacking autoconf (2.69-11) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../11-autotools-dev_20180224.1_all.deb ... Unpacking autotools-dev (20180224.1) ... Selecting previously unselected package automake. Preparing to unpack .../12-automake_1%3a1.16.1-4_all.deb ... Unpacking automake (1:1.16.1-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../13-autopoint_0.19.8.1-9_all.deb ... Unpacking autopoint (0.19.8.1-9) ... Selecting previously unselected package d-shlibs. Preparing to unpack .../14-d-shlibs_0.86_all.deb ... Unpacking d-shlibs (0.86) ... Selecting previously unselected package libtool. Preparing to unpack .../15-libtool_2.4.6-10_all.deb ... Unpacking libtool (2.4.6-10) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../16-dh-autoreconf_19_all.deb ... Unpacking dh-autoreconf (19) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../17-libarchive-zip-perl_1.64-1_all.deb ... Unpacking libarchive-zip-perl (1.64-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../18-libsub-override-perl_0.09-2_all.deb ... Unpacking libsub-override-perl (0.09-2) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../19-libfile-stripnondeterminism-perl_1.4.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.4.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../20-dh-strip-nondeterminism_1.4.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.4.0-1) ... Selecting previously unselected package libelf1:amd64. Preparing to unpack .../21-libelf1_0.176-1.1_amd64.deb ... Unpacking libelf1:amd64 (0.176-1.1) ... Selecting previously unselected package dwz. Preparing to unpack .../22-dwz_0.12.20190723-1_amd64.deb ... Unpacking dwz (0.12.20190723-1) ... Selecting previously unselected package libglib2.0-0:amd64. Preparing to unpack .../23-libglib2.0-0_2.60.6-1_amd64.deb ... Unpacking libglib2.0-0:amd64 (2.60.6-1) ... Selecting previously unselected package libcroco3:amd64. Preparing to unpack .../24-libcroco3_0.6.12-3_amd64.deb ... Unpacking libcroco3:amd64 (0.6.12-3) ... Selecting previously unselected package libncurses6:amd64. Preparing to unpack .../25-libncurses6_6.1+20190713-2_amd64.deb ... Unpacking libncurses6:amd64 (6.1+20190713-2) ... Selecting previously unselected package gettext. Preparing to unpack .../26-gettext_0.19.8.1-9_amd64.deb ... Unpacking gettext (0.19.8.1-9) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../27-intltool-debian_0.35.0+20060710.5_all.deb ... Unpacking intltool-debian (0.35.0+20060710.5) ... Selecting previously unselected package po-debconf. Preparing to unpack .../28-po-debconf_1.0.21_all.deb ... Unpacking po-debconf (1.0.21) ... Selecting previously unselected package debhelper. Preparing to unpack .../29-debhelper_12.2.3_all.deb ... Unpacking debhelper (12.2.3) ... Selecting previously unselected package gcc-8-base:armel. Preparing to unpack .../30-gcc-8-base_8.3.0-19_armel.deb ... Unpacking gcc-8-base:armel (8.3.0-19) ... Selecting previously unselected package libgcc1:armel. Preparing to unpack .../31-libgcc1_1%3a9.1.0-10_armel.deb ... Unpacking libgcc1:armel (1:9.1.0-10) ... Selecting previously unselected package libc6:armel. Preparing to unpack .../32-libc6_2.28-10_armel.deb ... Unpacking libc6:armel (2.28-10) ... Selecting previously unselected package libasan5:armel. Preparing to unpack .../33-libasan5_9.1.0-10_armel.deb ... Unpacking libasan5:armel (9.1.0-10) ... Selecting previously unselected package libatomic1:armel. Preparing to unpack .../34-libatomic1_9.1.0-10_armel.deb ... Unpacking libatomic1:armel (9.1.0-10) ... Selecting previously unselected package linux-libc-dev:armel. Preparing to unpack .../35-linux-libc-dev_4.19.37-6_armel.deb ... Unpacking linux-libc-dev:armel (4.19.37-6) ... Selecting previously unselected package libc6-dev:armel. Preparing to unpack .../36-libc6-dev_2.28-10_armel.deb ... Unpacking libc6-dev:armel (2.28-10) ... Selecting previously unselected package libgomp1:armel. Preparing to unpack .../37-libgomp1_9.1.0-10_armel.deb ... Unpacking libgomp1:armel (9.1.0-10) ... Selecting previously unselected package libstdc++6:armel. Preparing to unpack .../38-libstdc++6_9.1.0-10_armel.deb ... Unpacking libstdc++6:armel (9.1.0-10) ... Selecting previously unselected package libubsan1:armel. Preparing to unpack .../39-libubsan1_9.1.0-10_armel.deb ... Unpacking libubsan1:armel (9.1.0-10) ... Selecting previously unselected package libgcc-8-dev:armel. Preparing to unpack .../40-libgcc-8-dev_8.3.0-19_armel.deb ... Unpacking libgcc-8-dev:armel (8.3.0-19) ... Selecting previously unselected package libstdc++-8-dev:armel. Preparing to unpack .../41-libstdc++-8-dev_8.3.0-19_armel.deb ... Unpacking libstdc++-8-dev:armel (8.3.0-19) ... Selecting previously unselected package pkg-config. Preparing to unpack .../42-pkg-config_0.29-6_amd64.deb ... Unpacking pkg-config (0.29-6) ... Selecting previously unselected package zlib1g:armel. Preparing to unpack .../43-zlib1g_1%3a1.2.11.dfsg-1_armel.deb ... Unpacking zlib1g:armel (1:1.2.11.dfsg-1) ... Selecting previously unselected package zlib1g-dev:armel. Preparing to unpack .../44-zlib1g-dev_1%3a1.2.11.dfsg-1_armel.deb ... Unpacking zlib1g-dev:armel (1:1.2.11.dfsg-1) ... Selecting previously unselected package sbuild-build-depends-libmaus2-dummy:armel. Preparing to unpack .../45-sbuild-build-depends-libmaus2-dummy_0.invalid.0_armel.deb ... Unpacking sbuild-build-depends-libmaus2-dummy:armel (0.invalid.0) ... Setting up libpipeline1:amd64 (1.5.1-2) ... Setting up libarchive-zip-perl (1.64-1) ... Setting up libglib2.0-0:amd64 (2.60.6-1) ... No schema files found: doing nothing. Setting up linux-libc-dev:armel (4.19.37-6) ... Setting up gettext-base (0.19.8.1-9) ... Setting up autotools-dev (20180224.1) ... Setting up libncurses6:amd64 (6.1+20190713-2) ... Setting up libsigsegv2:amd64 (2.12-2) ... Setting up gcc-8-base:armel (8.3.0-19) ... Setting up autopoint (0.19.8.1-9) ... Setting up libcroco3:amd64 (0.6.12-3) ... Setting up pkg-config (0.29-6) ... Setting up d-shlibs (0.86) ... Setting up libuchardet0:amd64 (0.0.6-3) ... Setting up libsub-override-perl (0.09-2) ... Setting up libbsd0:amd64 (0.9.1-2) ... Setting up libelf1:amd64 (0.176-1.1) ... Setting up gcc-9-base:armel (9.1.0-10) ... Setting up libfile-stripnondeterminism-perl (1.4.0-1) ... Setting up gettext (0.19.8.1-9) ... Setting up libtool (2.4.6-10) ... Setting up m4 (1.4.18-2) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up autoconf (2.69-11) ... Setting up dwz (0.12.20190723-1) ... Setting up groff-base (1.22.4-3) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up po-debconf (1.0.21) ... Setting up man-db (2.8.6-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libc6:armel (2.28-10) ... Setting up libc6-dev:armel (2.28-10) ... Setting up libgcc1:armel (1:9.1.0-10) ... Setting up zlib1g:armel (1:1.2.11.dfsg-1) ... Setting up libgomp1:armel (9.1.0-10) ... Setting up dh-autoreconf (19) ... Setting up libasan5:armel (9.1.0-10) ... Setting up libatomic1:armel (9.1.0-10) ... Setting up zlib1g-dev:armel (1:1.2.11.dfsg-1) ... Setting up libstdc++6:armel (9.1.0-10) ... Setting up debhelper (12.2.3) ... Setting up libubsan1:armel (9.1.0-10) ... Setting up dh-strip-nondeterminism (1.4.0-1) ... Setting up libgcc-8-dev:armel (8.3.0-19) ... Setting up libstdc++-8-dev:armel (8.3.0-19) ... Setting up sbuild-build-depends-libmaus2-dummy:armel (0.invalid.0) ... Processing triggers for libc-bin (2.28-10) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.9.0-8-amd64 amd64 (x86_64) Toolchain package versions: binutils_2.32.51.20190727-1 dpkg-dev_1.19.7 g++-8_8.3.0-19 gcc-8_8.3.0-19 libc6-dev_2.28-10 libstdc++-8-dev_8.3.0-19 libstdc++-8-dev-armel-cross_8.3.0-19cross1 libstdc++6_9.1.0-10 libstdc++6-armel-cross_9.1.0-8cross1 linux-libc-dev_4.19.37-6 Package versions: adduser_3.118 apt_1.8.2 autoconf_2.69-11 automake_1:1.16.1-4 autopoint_0.19.8.1-9 autotools-dev_20180224.1 base-files_11 base-passwd_3.5.46 bash_5.0-4 binutils_2.32.51.20190727-1 binutils-arm-linux-gnueabi_2.32.51.20190727-1 binutils-common_2.32.51.20190727-1 binutils-x86-64-linux-gnu_2.32.51.20190727-1 bsdmainutils_11.1.2+b1 bsdutils_1:2.34-0.1 build-essential_12.6 bzip2_1.0.6-9.2 coreutils_8.30-3 cpp_4:8.3.0-1 cpp-8_8.3.0-19 cpp-8-arm-linux-gnueabi_8.3.0-19cross1 cpp-arm-linux-gnueabi_4:8.3.0-1 cross-config_2.6.15-3 crossbuild-essential-armel_12.6 d-shlibs_0.86 dash_0.5.10.2-6 debconf_1.5.73 debhelper_12.2.3 debian-archive-keyring_2019.1 debianutils_4.8.6.3 dh-autoreconf_19 dh-strip-nondeterminism_1.4.0-1 diffutils_1:3.7-3 dpkg_1.19.7 dpkg-cross_2.6.15-3 dpkg-dev_1.19.7 dwz_0.12.20190723-1 e2fsprogs_1.45.3-3 fakeroot_1.23-1 fdisk_2.34-0.1 file_1:5.37-5 findutils_4.6.0+git+20190510-2 g++_4:8.3.0-1 g++-8_8.3.0-19 g++-8-arm-linux-gnueabi_8.3.0-19cross1 g++-arm-linux-gnueabi_4:8.3.0-1 gcc_4:8.3.0-1 gcc-8_8.3.0-19 gcc-8-arm-linux-gnueabi_8.3.0-19cross1 gcc-8-arm-linux-gnueabi-base_8.3.0-19cross1 gcc-8-base_8.3.0-19 gcc-8-cross-base_8.3.0-19cross1 gcc-9-base_9.1.0-10 gcc-9-cross-base_9.1.0-8cross1 gcc-arm-linux-gnueabi_4:8.3.0-1 gettext_0.19.8.1-9 gettext-base_0.19.8.1-9 gpgv_2.2.17-3 grep_3.3-1 groff-base_1.22.4-3 gzip_1.9-3 hostname_3.21 init-system-helpers_1.57 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-4 libapt-pkg5.0_1.8.2 libarchive-zip-perl_1.64-1 libasan5_9.1.0-10 libasan5-armel-cross_9.1.0-8cross1 libatomic1_9.1.0-10 libatomic1-armel-cross_9.1.0-8cross1 libattr1_1:2.4.48-4 libaudit-common_1:2.8.5-2 libaudit1_1:2.8.5-2 libbinutils_2.32.51.20190727-1 libblkid1_2.34-0.1 libbsd0_0.9.1-2 libbz2-1.0_1.0.6-9.2 libc-bin_2.28-10 libc-dev-bin_2.28-10 libc6_2.28-10 libc6-armel-cross_2.28-10cross3 libc6-dev_2.28-10 libc6-dev-armel-cross_2.28-10cross3 libcap-ng0_0.7.9-2 libcc1-0_9.1.0-10 libcom-err2_1.45.3-3 libconfig-auto-perl_0.44-1 libconfig-inifiles-perl_3.000001-1 libcroco3_0.6.12-3 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.249 libdebian-dpkgcross-perl_2.6.15-3 libdpkg-perl_1.19.7 libelf1_0.176-1.1 libext2fs2_1.45.3-3 libfakeroot_1.23-1 libfdisk1_2.34-0.1 libffi6_3.2.1-9 libfile-homedir-perl_1.004-1 libfile-stripnondeterminism-perl_1.4.0-1 libfile-which-perl_1.23-1 libgcc-8-dev_8.3.0-19 libgcc-8-dev-armel-cross_8.3.0-19cross1 libgcc1_1:9.1.0-10 libgcc1-armel-cross_1:9.1.0-8cross1 libgcrypt20_1.8.4-5 libgdbm-compat4_1.18.1-4+b1 libgdbm6_1.18.1-4+b1 libglib2.0-0_2.60.6-1 libgmp10_2:6.1.2+dfsg-4 libgnutls30_3.6.9-3 libgomp1_9.1.0-10 libgomp1-armel-cross_9.1.0-8cross1 libgpg-error0_1.36-7 libhogweed4_3.4.1-1 libicu63_63.2-2 libidn2-0_2.2.0-1 libio-string-perl_1.08-3 libisl19_0.20-2 libitm1_9.1.0-10 liblocale-gettext-perl_1.07-3+b4 liblsan0_9.1.0-10 liblz4-1_1.8.3-1 liblzma5_5.2.4-1 libmagic-mgc_1:5.37-5 libmagic1_1:5.37-5 libmount1_2.34-0.1 libmpc3_1.1.0-1 libmpfr6_4.0.2-1 libmpx2_8.3.0-19 libncurses6_6.1+20190713-2 libncursesw6_6.1+20190713-2 libnettle6_3.4.1-1 libp11-kit0_0.23.15-2 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpcre2-8-0_10.32-5 libpcre3_2:8.39-12 libperl5.28_5.28.1-6 libpipeline1_1.5.1-2 libquadmath0_9.1.0-10 libseccomp2_2.4.1-2 libselinux1_2.9-2 libsemanage-common_2.9-3 libsemanage1_2.9-3 libsepol1_2.9-2 libsigsegv2_2.12-2 libsmartcols1_2.34-0.1 libss2_1.45.3-3 libstdc++-8-dev_8.3.0-19 libstdc++-8-dev-armel-cross_8.3.0-19cross1 libstdc++6_9.1.0-10 libstdc++6-armel-cross_9.1.0-8cross1 libsub-override-perl_0.09-2 libsystemd0_241-7 libtasn1-6_4.14-2 libtinfo6_6.1+20190713-2 libtool_2.4.6-10 libtsan0_9.1.0-10 libubsan1_9.1.0-10 libubsan1-armel-cross_9.1.0-8cross1 libuchardet0_0.0.6-3 libudev1_241-7 libunistring2_0.9.10-2 libuuid1_2.34-0.1 libxml-libxml-perl_2.0134+dfsg-1 libxml-namespacesupport-perl_1.12-1 libxml-sax-base-perl_1.09-1 libxml-sax-perl_1.02+dfsg-1 libxml-simple-perl_2.25-1 libxml2_2.9.4+dfsg1-7+b3 libyaml-perl_1.29-1 libzstd1_1.3.8+dfsg-3 linux-libc-dev_4.19.37-6 linux-libc-dev-armel-cross_4.19.37-5cross3 login_1:4.7-2 logsave_1.45.3-3 m4_1.4.18-2 make_4.2.1-1.2 man-db_2.8.6-1 mawk_1.3.3-17+b3 mount_2.34-0.1 ncurses-base_6.1+20190713-2 ncurses-bin_6.1+20190713-2 passwd_1:4.7-2 patch_2.7.6-6 perl_5.28.1-6 perl-base_5.28.1-6 perl-modules-5.28_5.28.1-6 pkg-config_0.29-6 po-debconf_1.0.21 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-essential-dummy_0.invalid.0 sbuild-build-depends-libmaus2-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12 sysvinit-utils_2.95-4 tar_1.30+dfsg-6 tzdata_2019b-1 ucf_3.0038+nmu1 util-linux_2.34-0.1 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-1 zlib1g-dev_1:1.2.11.dfsg-1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Fri Apr 12 22:22:01 2019 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./libmaus2_2.0.611-1.dsc dpkg-source: info: extracting libmaus2 in /<> dpkg-source: info: unpacking libmaus2_2.0.611.orig.tar.bz2 dpkg-source: info: unpacking libmaus2_2.0.611-1.debian.tar.xz Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.armel DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=POSIX LOGNAME=helmut PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1003 SCHROOT_GROUP=helmut SCHROOT_SESSION_ID=unstable-amd64-sbuild-3dc4249d-e347-490a-a7ad-a69ca04bb844 SCHROOT_UID=1003 SCHROOT_USER=helmut SHELL=/bin/sh USER=helmut dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package libmaus2 dpkg-buildpackage: info: source version 2.0.611-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-architecture: warning: specified GNU system type arm-linux-gnueabi does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture armel fakeroot debian/rules clean dh clean dh_clean debian/rules build-arch dh build-arch dh_update_autotools_config -a dh_autoreconf -a libtoolize: putting auxiliary files in '.'. libtoolize: copying file './ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'. libtoolize: copying file 'm4/libtool.m4' libtoolize: copying file 'm4/ltoptions.m4' libtoolize: copying file 'm4/ltsugar.m4' libtoolize: copying file 'm4/ltversion.m4' libtoolize: copying file 'm4/lt~obsolete.m4' configure.ac:6: installing './compile' configure.ac:8: installing './missing' src/Makefile.am: installing './depcomp' parallel-tests: installing './test-driver' dh_auto_configure -a ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/arm-linux-gnueabi --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --host=arm-linux-gnueabi configure: WARNING: unrecognized options: --disable-maintainer-mode configure: loading site script /etc/dpkg-cross/cross-config.armel configure: Configuring for source in directory . checking build system type... x86_64-pc-linux-gnu checking host system type... arm-unknown-linux-gnueabi checking target system type... arm-unknown-linux-gnueabi checking how to print strings... printf checking for arm-linux-gnueabi-gcc... arm-linux-gnueabi-gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... yes checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether arm-linux-gnueabi-gcc accepts -g... yes checking for arm-linux-gnueabi-gcc option to accept ISO C89... none needed checking whether arm-linux-gnueabi-gcc understands -c and -o together... yes checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by arm-linux-gnueabi-gcc... /usr/arm-linux-gnueabi/bin/ld checking if the linker (/usr/arm-linux-gnueabi/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/arm-linux-gnueabi-nm -B checking the name lister (/usr/bin/arm-linux-gnueabi-nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-pc-linux-gnu file names to arm-unknown-linux-gnueabi format... func_convert_file_noop checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/arm-linux-gnueabi/bin/ld option to reload object files... -r checking for arm-linux-gnueabi-objdump... arm-linux-gnueabi-objdump checking how to recognize dependent libraries... pass_all checking for arm-linux-gnueabi-dlltool... no checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for arm-linux-gnueabi-ar... arm-linux-gnueabi-ar checking for archiver @FILE support... @ checking for arm-linux-gnueabi-strip... arm-linux-gnueabi-strip checking for arm-linux-gnueabi-ranlib... arm-linux-gnueabi-ranlib checking for gawk... no checking for mawk... mawk checking command to parse /usr/bin/arm-linux-gnueabi-nm -B output from arm-linux-gnueabi-gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for arm-linux-gnueabi-mt... no checking for mt... no checking if : is a manifest tool... no checking how to run the C preprocessor... arm-linux-gnueabi-gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if arm-linux-gnueabi-gcc supports -fno-rtti -fno-exceptions... no checking for arm-linux-gnueabi-gcc option to produce PIC... -fPIC -DPIC checking if arm-linux-gnueabi-gcc PIC flag -fPIC -DPIC works... yes checking if arm-linux-gnueabi-gcc static flag -static works... yes checking if arm-linux-gnueabi-gcc supports -c -o file.o... yes checking if arm-linux-gnueabi-gcc supports -c -o file.o... (cached) yes checking whether the arm-linux-gnueabi-gcc linker (/usr/arm-linux-gnueabi/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for arm-linux-gnueabi-strip... (cached) arm-linux-gnueabi-strip checking for a thread-safe mkdir -p... /bin/mkdir -p checking whether make sets $(MAKE)... yes checking whether make supports the include directive... yes (GNU style) checking whether make supports nested variables... yes checking how to create a pax tar archive... gnutar checking dependency style of arm-linux-gnueabi-gcc... none checking whether we are cross compiling... yes checking for bash... /bin/bash checking for base64... /usr/bin/base64 checking for arm-linux-gnueabi-gcc... (cached) arm-linux-gnueabi-gcc checking whether we are using the GNU C compiler... (cached) yes checking whether arm-linux-gnueabi-gcc accepts -g... (cached) yes checking for arm-linux-gnueabi-gcc option to accept ISO C89... (cached) none needed checking whether arm-linux-gnueabi-gcc understands -c and -o together... (cached) yes checking for arm-linux-gnueabi-g++... arm-linux-gnueabi-g++ checking whether we are using the GNU C++ compiler... yes checking whether arm-linux-gnueabi-g++ accepts -g... yes checking how to run the C++ preprocessor... arm-linux-gnueabi-g++ -E checking for ld used by arm-linux-gnueabi-g++... /usr/arm-linux-gnueabi/bin/ld checking if the linker (/usr/arm-linux-gnueabi/bin/ld) is GNU ld... yes checking whether the arm-linux-gnueabi-g++ linker (/usr/arm-linux-gnueabi/bin/ld) supports shared libraries... yes checking for arm-linux-gnueabi-g++ option to produce PIC... -fPIC -DPIC checking if arm-linux-gnueabi-g++ PIC flag -fPIC -DPIC works... yes checking if arm-linux-gnueabi-g++ static flag -static works... yes checking if arm-linux-gnueabi-g++ supports -c -o file.o... yes checking if arm-linux-gnueabi-g++ supports -c -o file.o... (cached) yes checking whether the arm-linux-gnueabi-g++ linker (/usr/arm-linux-gnueabi/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking dependency style of arm-linux-gnueabi-g++... none checking whether host cpu is x86_64... no checking whether host os is GNU/Linux... no checking whether we are compiling for x86_64 CPU on GNU/Linux OS ... no checking size of unsigned long... (cached) 4 checking for arm-linux-gnueabi-pkg-config... /usr/bin/arm-linux-gnueabi-pkg-config checking pkg-config is at least version 0.9.0... yes checking for zlib... yes checking for zlib... yes checking whether we can compile a zlib program... yes checking snappy.h usability... no checking snappy.h presence... no checking for snappy.h... no checking for ANSI C header files... (cached) yes checking aio.h usability... yes checking aio.h presence... yes checking for aio.h... yes checking execinfo.h usability... yes checking execinfo.h presence... yes checking for execinfo.h... yes checking windows.h usability... no checking windows.h presence... no checking for windows.h... no checking for unistd.h... (cached) yes checking linux/sysctl.h usability... yes checking linux/sysctl.h presence... yes checking for linux/sysctl.h... yes checking features.h usability... yes checking features.h presence... yes checking for features.h... yes checking for stdint.h... (cached) yes checking for dlfcn.h... (cached) yes checking for dlopen... no checking for dlerror... no checking for dlsym... no checking for dlclose... no checking for dlopen in -ldl... yes checking for dlerror in -ldl... yes checking for dlsym in -ldl... yes checking for dlclose in -ldl... yes checking whether we found the dlopen function anywhere... yes checking whether we found the dlerror function anywhere... yes checking whether we found the dlsym function anywhere... yes checking whether we found the dlclose function anywhere... yes checking whether we found all the functions required for dynamic modules somewhere... yes checking whether we need the dl library for any of the dl functions... yes checking for aio_suspend in -lrt... yes checking for backtrace... yes checking for setrlimit... yes checking for fcntl... yes checking whether the C++ compiler supports the -std=gnu++0x flag... yes checking whether the C++ compiler supports the -msse4 flag... no checking whether the C++ compiler supports the -msse2 flag... no checking whether the C++ compiler supports the -mssse3 flag... no checking whether the C++ compiler supports the -msse4.1 flag... no checking whether the C++ compiler supports the -mavx flag... no checking whether the C++ compiler supports the -mavx2 flag... no checking smmintrin.h usability... no checking smmintrin.h presence... no checking for smmintrin.h... no checking immintrin.h usability... no checking immintrin.h presence... no checking for immintrin.h... no checking whether the C++ compiler supports all intrinsics required for SIMD global alignment (X128/8 variant)... no checking whether the C++ compiler supports all intrinsics required for SIMD global alignment (X128/16 variant)... no checking whether the C++ compiler supports all intrinsics required for SIMD global alignment (Y256/8 variant)... no checking whether the C++ compiler supports all intrinsics required for SIMD global alignment (Y256/16 variant)... no checking whether the C++ compiler supports all intrinsics required for one to many global alignment using AVX2... no checking cstdint usability... yes checking cstdint presence... yes checking for cstdint... yes checking whether the C++ compiler supports the -msse4 flag... no checking for mmap... yes checking for mmap flag MAP_HUGETLB... yes checking whether the C++ compiler supports the -W flag... yes checking whether the C++ compiler supports the -Wall flag... yes checking whether the C++ compiler supports the -Wnon-virtual-dtor flag... yes checking for OpenMP flag of C++ compiler... -fopenmp checking whether std::unique_ptr exists... yes checking whether std::shared_ptr exists... yes checking whether std::unordered_map exists... yes checking whether std::unordered_set exists... yes checking whether std::move exists... yes checking for sys/types.h... (cached) yes checking sys/vfs.h usability... yes checking sys/vfs.h presence... yes checking for sys/vfs.h... yes checking for windows.h... (cached) no checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking regex.h usability... yes checking regex.h presence... yes checking for regex.h... yes checking whether byte ordering is bigendian... (cached) no checking whether we can compile a program using posix regex... yes checking whether we can compile a program using statfs... yes checking whether struct statfs has field f_iosize... no checking whether struct statfs has field f_bsize... yes checking whether the C++ compiler supports the -pthread flag... yes checking for pthread spin lock support... yes checking for sem_post... yes checking for sem_wait... yes checking for sem_init... yes checking for sem_destroy... yes checking for sem_timedwait... yes checking for pthread_setname_np... yes checking for pthread_set_name_np... no checking for pthread_getname_np... yes checking for pthread_get_name_np... no checking for pthread_setaffinity_np... yes checking for pthread_attr_setaffinity_np... yes checking for prctl... yes checking for pthread_setaffinity_np support... checking whether the C++ compiler supports __sync_fetch_and_add... yes checking whether the C++ compiler supports __sync_add_and_fetch... yes checking whether the C++ compiler supports __sync_fetch_and_and... yes checking whether the C++ compiler supports __sync_fetch_and_or... yes checking whether the C++ compiler supports __sync_fetch_and_sub... yes checking whether the C++ compiler supports __sync_bool_compare_and_swap... yes checking whether the C++ compiler supports __sync_lock_test_and_set... yes checking whether the C++ compiler supports __sync_lock_release... yes checking whether the C++ compiler supports __sync_val_compare_and_swap... yes checking whether the C++ compiler supports synchronous lock operations... yes checking whether posix_memalign is present... yes checking whether getpagesize is present... yes checking whether MSG_CMSG_CLOEXEC is defined... yes checking for libarchive... no checking libkern/OSAtomic.h usability... no checking libkern/OSAtomic.h presence... no checking for libkern/OSAtomic.h... no checking for unsigned __int128... no checking whether we can compile a program using the gmp library... no checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... 64 checking for _LARGEFILE_SOURCE value needed for large files... no checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating libmaus2.pc config.status: creating libmaus2digests.pc config.status: creating libmaus2irods.pc config.status: creating libmaus2seqchksumsfactory.pc config.status: creating libmaus2fftw.pc config.status: creating ubuntu.sh config.status: creating src/libmaus2/LibMausConfig.hpp config.status: creating test/Makefile config.status: creating config.h config.status: executing libtool commands config.status: executing depfiles commands configure: WARNING: unrecognized options: --disable-maintainer-mode dh_auto_build -a make -j1 make[1]: Entering directory '/<>' make all-recursive make[2]: Entering directory '/<>' Making all in src make[3]: Entering directory '/<>/src' arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testAIO-testAIO.o `test -f 'test/testAIO.cpp' || echo './'`test/testAIO.cpp /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/la-StaticInitialization.lo `test -f 'libmaus2/StaticInitialization.cpp' || echo './'`libmaus2/StaticInitialization.cpp libtool: compile: arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/StaticInitialization.cpp -fPIC -DPIC -o libmaus2/.libs/la-StaticInitialization.o In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/parallel/PosixSpinLock.hpp:23, from ./libmaus2/aio/StreamLock.hpp:21, from libmaus2/StaticInitialization.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In function ‘void libmaus2::math::DecimalNumberParser::insertDiv10(size_t, N, std::vector&) [with N = long long int]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In constructor ‘libmaus2::math::DecimalNumberParser::DecimalNumberParser()’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ libtool: compile: arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/StaticInitialization.cpp -o libmaus2/la-StaticInitialization.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/autoarray/la-AutoArray.lo `test -f 'libmaus2/autoarray/AutoArray.cpp' || echo './'`libmaus2/autoarray/AutoArray.cpp libtool: compile: arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/autoarray/AutoArray.cpp -fPIC -DPIC -o libmaus2/autoarray/.libs/la-AutoArray.o libtool: compile: arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/autoarray/AutoArray.cpp -o libmaus2/autoarray/la-AutoArray.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/bitio/la-CompactArray.lo `test -f 'libmaus2/bitio/CompactArray.cpp' || echo './'`libmaus2/bitio/CompactArray.cpp libtool: compile: arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/bitio/CompactArray.cpp -fPIC -DPIC -o libmaus2/bitio/.libs/la-CompactArray.o libtool: compile: arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/bitio/CompactArray.cpp -o libmaus2/bitio/la-CompactArray.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/rank/la-RankTable.lo `test -f 'libmaus2/rank/RankTable.cpp' || echo './'`libmaus2/rank/RankTable.cpp libtool: compile: arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/rank/RankTable.cpp -fPIC -DPIC -o libmaus2/rank/.libs/la-RankTable.o libtool: compile: arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/rank/RankTable.cpp -o libmaus2/rank/la-RankTable.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/rank/la-log2table.lo `test -f 'libmaus2/rank/log2table.cpp' || echo './'`libmaus2/rank/log2table.cpp libtool: compile: arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/rank/log2table.cpp -fPIC -DPIC -o libmaus2/rank/.libs/la-log2table.o libtool: compile: arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/rank/log2table.cpp -o libmaus2/rank/la-log2table.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/fastx/la-isFastQ.lo `test -f 'libmaus2/fastx/isFastQ.cpp' || echo './'`libmaus2/fastx/isFastQ.cpp libtool: compile: arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/fastx/isFastQ.cpp -fPIC -DPIC -o libmaus2/fastx/.libs/la-isFastQ.o libtool: compile: arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/fastx/isFastQ.cpp -o libmaus2/fastx/la-isFastQ.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/wavelet/la-toWaveletTreeBits.lo `test -f 'libmaus2/wavelet/toWaveletTreeBits.cpp' || echo './'`libmaus2/wavelet/toWaveletTreeBits.cpp libtool: compile: arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/wavelet/toWaveletTreeBits.cpp -fPIC -DPIC -o libmaus2/wavelet/.libs/la-toWaveletTreeBits.o In file included from /usr/arm-linux-gnueabi/include/c++/8/deque:66, from libmaus2/wavelet/toWaveletTreeBits.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/deque.tcc: In function ‘std::_Deque_iterator<_Tp, _Tp&, _Tp*> std::copy(std::_Deque_iterator<_Tp, const _Tp&, const _Tp*>, std::_Deque_iterator<_Tp, const _Tp&, const _Tp*>, std::_Deque_iterator<_Tp, _Tp&, _Tp*>) [with _Tp = std::pair]’: /usr/arm-linux-gnueabi/include/c++/8/bits/deque.tcc:986:5: note: parameter passing for argument of type ‘std::_Deque_iterator, const std::pair&, const std::pair*>’ changed in GCC 7.1 copy(_Deque_iterator<_Tp, const _Tp&, const _Tp*> __first, ^~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/deque.tcc:986:5: note: parameter passing for argument of type ‘std::_Deque_iterator, const std::pair&, const std::pair*>’ changed in GCC 7.1 In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/parallel/PosixSpinLock.hpp:23, from ./libmaus2/aio/StreamLock.hpp:21, from ./libmaus2/autoarray/GenericAlignedAllocation.hpp:23, from ./libmaus2/autoarray/AutoArray.hpp:26, from ./libmaus2/wavelet/toWaveletTreeBits.hpp:23, from libmaus2/wavelet/toWaveletTreeBits.cpp:21: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::wavelet::CopyBackPacket&}; _Tp = libmaus2::wavelet::CopyBackPacket; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::wavelet::CopyBackPacket}; _Tp = libmaus2::wavelet::CopyBackPacket; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {libmaus2::wavelet::CopyBackPacket}; _Tp = libmaus2::wavelet::CopyBackPacket; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/deque:66, from libmaus2/wavelet/toWaveletTreeBits.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/deque.tcc: In member function ‘void std::deque<_Tp, _Alloc>::_M_insert_aux(std::deque<_Tp, _Alloc>::iterator, _ForwardIterator, _ForwardIterator, std::deque<_Tp, _Alloc>::size_type) [with _ForwardIterator = std::_Deque_iterator, const std::pair&, const std::pair*>; _Tp = std::pair; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/deque.tcc:758:7: note: parameter passing for argument of type ‘std::_Deque_iterator, const std::pair&, const std::pair*>’ changed in GCC 7.1 deque<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/deque.tcc:758:7: note: parameter passing for argument of type ‘std::_Deque_iterator, const std::pair&, const std::pair*>’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/deque.tcc:781:7: note: parameter passing for argument of type ‘std::_Deque_iterator, const std::pair&, const std::pair*>’ changed in GCC 7.1 std::copy(__first, __last, __pos - difference_type(__n)); ^~~ /usr/arm-linux-gnueabi/include/c++/8/bits/deque.tcc:781:7: note: parameter passing for argument of type ‘std::_Deque_iterator, const std::pair&, const std::pair*>’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/deque.tcc:781:7: note: parameter passing for argument of type ‘std::_Deque_iterator, const std::pair&, const std::pair*>’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/deque.tcc:792:7: note: parameter passing for argument of type ‘std::_Deque_iterator, const std::pair&, const std::pair*>’ changed in GCC 7.1 std::copy(__mid, __last, __old_start); ^~~ /usr/arm-linux-gnueabi/include/c++/8/bits/deque.tcc:792:7: note: parameter passing for argument of type ‘std::_Deque_iterator, const std::pair&, const std::pair*>’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/deque.tcc:792:7: note: parameter passing for argument of type ‘std::_Deque_iterator, const std::pair&, const std::pair*>’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/deque.tcc:821:5: note: parameter passing for argument of type ‘std::_Deque_iterator, const std::pair&, const std::pair*>’ changed in GCC 7.1 std::copy(__first, __last, __pos); ^~~ /usr/arm-linux-gnueabi/include/c++/8/bits/deque.tcc:821:5: note: parameter passing for argument of type ‘std::_Deque_iterator, const std::pair&, const std::pair*>’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/deque.tcc:821:5: note: parameter passing for argument of type ‘std::_Deque_iterator, const std::pair&, const std::pair*>’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/deque.tcc:832:5: note: parameter passing for argument of type ‘std::_Deque_iterator, const std::pair&, const std::pair*>’ changed in GCC 7.1 std::copy(__first, __mid, __pos); ^~~ /usr/arm-linux-gnueabi/include/c++/8/bits/deque.tcc:832:5: note: parameter passing for argument of type ‘std::_Deque_iterator, const std::pair&, const std::pair*>’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/deque.tcc:832:5: note: parameter passing for argument of type ‘std::_Deque_iterator, const std::pair&, const std::pair*>’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/deque.tcc: In member function ‘std::deque<_Tp, _Alloc>& std::deque<_Tp, _Alloc>::operator=(const std::deque<_Tp, _Alloc>&) [with _Tp = std::pair; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/deque.tcc:117:6: note: parameter passing for argument of type ‘std::_Deque_iterator, const std::pair&, const std::pair*>’ changed in GCC 7.1 _M_erase_at_end(std::copy(__x.begin(), __x.end(), ^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/deque.tcc:117:6: note: parameter passing for argument of type ‘std::_Deque_iterator, const std::pair&, const std::pair*>’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/deque.tcc:117:6: note: parameter passing for argument of type ‘std::_Deque_iterator, const std::pair&, const std::pair*>’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/deque.tcc:122:8: note: parameter passing for argument of type ‘std::_Deque_iterator, const std::pair&, const std::pair*>’ changed in GCC 7.1 std::copy(__x.begin(), __mid, this->_M_impl._M_start); ^~~ /usr/arm-linux-gnueabi/include/c++/8/bits/deque.tcc:122:8: note: parameter passing for argument of type ‘std::_Deque_iterator, const std::pair&, const std::pair*>’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/deque.tcc:122:8: note: parameter passing for argument of type ‘std::deque >::const_iterator’ {aka ‘std::_Deque_iterator, const std::pair&, const std::pair*>’} changed in GCC 7.1 In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/parallel/PosixSpinLock.hpp:23, from ./libmaus2/aio/StreamLock.hpp:21, from ./libmaus2/autoarray/GenericAlignedAllocation.hpp:23, from ./libmaus2/autoarray/AutoArray.hpp:26, from ./libmaus2/wavelet/toWaveletTreeBits.hpp:23, from libmaus2/wavelet/toWaveletTreeBits.cpp:21: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In function ‘libmaus2::autoarray::AutoArray > libmaus2::wavelet::toWaveletTreeBitsParallel(libmaus2::bitio::CompactArray*, bool, uint64_t)’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ libtool: compile: arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/wavelet/toWaveletTreeBits.cpp -o libmaus2/wavelet/la-toWaveletTreeBits.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/suffixsort/la-divsufsort.lo `test -f 'libmaus2/suffixsort/divsufsort.cpp' || echo './'`libmaus2/suffixsort/divsufsort.cpp libtool: compile: arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/suffixsort/divsufsort.cpp -fPIC -DPIC -o libmaus2/suffixsort/.libs/la-divsufsort.o libtool: compile: arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/suffixsort/divsufsort.cpp -o libmaus2/suffixsort/la-divsufsort.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/rmq/la-FischerSystematicSuccinctRMQ.lo `test -f 'libmaus2/rmq/FischerSystematicSuccinctRMQ.cpp' || echo './'`libmaus2/rmq/FischerSystematicSuccinctRMQ.cpp libtool: compile: arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/rmq/FischerSystematicSuccinctRMQ.cpp -fPIC -DPIC -o libmaus2/rmq/.libs/la-FischerSystematicSuccinctRMQ.o libtool: compile: arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/rmq/FischerSystematicSuccinctRMQ.cpp -o libmaus2/rmq/la-FischerSystematicSuccinctRMQ.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/lcp/la-OracleLCP.lo `test -f 'libmaus2/lcp/OracleLCP.cpp' || echo './'`libmaus2/lcp/OracleLCP.cpp libtool: compile: arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/lcp/OracleLCP.cpp -fPIC -DPIC -o libmaus2/lcp/.libs/la-OracleLCP.o libtool: compile: arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/lcp/OracleLCP.cpp -o libmaus2/lcp/la-OracleLCP.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/util/la-StackTrace.lo `test -f 'libmaus2/util/StackTrace.cpp' || echo './'`libmaus2/util/StackTrace.cpp libtool: compile: arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/util/StackTrace.cpp -fPIC -DPIC -o libmaus2/util/.libs/la-StackTrace.o libtool: compile: arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/util/StackTrace.cpp -o libmaus2/util/la-StackTrace.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/lcs/la-OverlapComputation.lo `test -f 'libmaus2/lcs/OverlapComputation.cpp' || echo './'`libmaus2/lcs/OverlapComputation.cpp libtool: compile: arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/lcs/OverlapComputation.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/la-OverlapComputation.o libtool: compile: arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/lcs/OverlapComputation.cpp -o libmaus2/lcs/la-OverlapComputation.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/lcs/la-HashContainer.lo `test -f 'libmaus2/lcs/HashContainer.cpp' || echo './'`libmaus2/lcs/HashContainer.cpp libtool: compile: arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/lcs/HashContainer.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/la-HashContainer.o libtool: compile: arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/lcs/HashContainer.cpp -o libmaus2/lcs/la-HashContainer.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o 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-Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/util/la-Concat.lo `test -f 'libmaus2/util/Concat.cpp' || echo './'`libmaus2/util/Concat.cpp libtool: compile: arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/util/Concat.cpp -fPIC -DPIC -o libmaus2/util/.libs/la-Concat.o libtool: compile: arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/util/Concat.cpp -o libmaus2/util/la-Concat.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/util/la-ConcatRequest.lo `test -f 'libmaus2/util/ConcatRequest.cpp' || echo './'`libmaus2/util/ConcatRequest.cpp libtool: compile: arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/util/ConcatRequest.cpp -fPIC -DPIC -o libmaus2/util/.libs/la-ConcatRequest.o libtool: compile: arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/util/ConcatRequest.cpp -o libmaus2/util/la-ConcatRequest.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/util/la-ConsoleColor.lo `test -f 'libmaus2/util/ConsoleColor.cpp' || echo './'`libmaus2/util/ConsoleColor.cpp libtool: compile: arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/util/ConsoleColor.cpp -fPIC -DPIC -o libmaus2/util/.libs/la-ConsoleColor.o libtool: compile: arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/util/ConsoleColor.cpp -o libmaus2/util/la-ConsoleColor.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/util/la-Demangle.lo `test -f 'libmaus2/util/Demangle.cpp' || echo './'`libmaus2/util/Demangle.cpp libtool: compile: arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/util/Demangle.cpp -fPIC -DPIC -o libmaus2/util/.libs/la-Demangle.o libtool: compile: arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/util/Demangle.cpp -o libmaus2/util/la-Demangle.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/util/la-DynamicLoading.lo `test -f 'libmaus2/util/DynamicLoading.cpp' || echo './'`libmaus2/util/DynamicLoading.cpp libtool: compile: arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/util/DynamicLoading.cpp -fPIC -DPIC -o libmaus2/util/.libs/la-DynamicLoading.o libtool: compile: arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/util/DynamicLoading.cpp -o libmaus2/util/la-DynamicLoading.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/util/la-GetFileSize.lo `test -f 'libmaus2/util/GetFileSize.cpp' || echo './'`libmaus2/util/GetFileSize.cpp libtool: compile: arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/util/GetFileSize.cpp -fPIC -DPIC -o libmaus2/util/.libs/la-GetFileSize.o libtool: compile: arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/util/GetFileSize.cpp -o libmaus2/util/la-GetFileSize.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/util/la-Histogram.lo `test -f 'libmaus2/util/Histogram.cpp' || echo './'`libmaus2/util/Histogram.cpp libtool: compile: arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/util/Histogram.cpp -fPIC -DPIC -o libmaus2/util/.libs/la-Histogram.o In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/parallel/PosixSpinLock.hpp:23, from ./libmaus2/aio/StreamLock.hpp:21, from ./libmaus2/autoarray/GenericAlignedAllocation.hpp:23, from ./libmaus2/autoarray/AutoArray.hpp:26, from ./libmaus2/util/Histogram.hpp:23, from libmaus2/util/Histogram.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector > >’} changed in GCC 7.1 In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/parallel/PosixSpinLock.hpp:23, from ./libmaus2/aio/StreamLock.hpp:21, from ./libmaus2/autoarray/GenericAlignedAllocation.hpp:23, from ./libmaus2/autoarray/AutoArray.hpp:26, from ./libmaus2/util/Histogram.hpp:23, from libmaus2/util/Histogram.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In member function ‘std::vector libmaus2::util::Histogram::getKeyVector()’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/util/Histogram.hpp:23, from libmaus2/util/Histogram.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 __move_median_to_first(_Iterator __result,_Iterator __a, _Iterator __b, ^~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Val_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 In file included from /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/util/Histogram.hpp:23, from libmaus2/util/Histogram.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/util/Histogram.hpp:23, from libmaus2/util/Histogram.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 __heap_select(_RandomAccessIterator __first, ^~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 std::__move_median_to_first(__first, __first + 1, __mid, __last - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1933:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 std::__heap_select(__first, __middle, __last, __comp); ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/parallel/PosixSpinLock.hpp:23, from ./libmaus2/aio/StreamLock.hpp:21, from ./libmaus2/autoarray/GenericAlignedAllocation.hpp:23, from ./libmaus2/autoarray/AutoArray.hpp:26, from ./libmaus2/util/Histogram.hpp:23, from libmaus2/util/Histogram.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘std::vector > libmaus2::util::Histogram::getFreqSymVector()’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/util/Histogram.hpp:23, from libmaus2/util/Histogram.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ libtool: compile: arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/util/Histogram.cpp -o libmaus2/util/la-Histogram.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/util/la-HistogramSet.lo `test -f 'libmaus2/util/HistogramSet.cpp' || echo './'`libmaus2/util/HistogramSet.cpp libtool: compile: arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/util/HistogramSet.cpp -fPIC -DPIC -o libmaus2/util/.libs/la-HistogramSet.o libtool: compile: arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/util/HistogramSet.cpp -o libmaus2/util/la-HistogramSet.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/util/la-IncreasingList.lo `test -f 'libmaus2/util/IncreasingList.cpp' || echo './'`libmaus2/util/IncreasingList.cpp libtool: compile: arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/util/IncreasingList.cpp -fPIC -DPIC -o libmaus2/util/.libs/la-IncreasingList.o In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/util/IncreasingList.hpp:23, from libmaus2/util/IncreasingList.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/util/IncreasingList.hpp:23, from libmaus2/util/IncreasingList.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/util/IncreasingList.hpp:23, from libmaus2/util/IncreasingList.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In static member function ‘static void libmaus2::util::IncreasingList::test(const std::vector&)’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ libtool: compile: arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/util/IncreasingList.cpp -o libmaus2/util/la-IncreasingList.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/util/la-IntervalTree.lo `test -f 'libmaus2/util/IntervalTree.cpp' || echo './'`libmaus2/util/IntervalTree.cpp libtool: compile: arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/util/IntervalTree.cpp -fPIC -DPIC -o libmaus2/util/.libs/la-IntervalTree.o libtool: compile: arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/util/IntervalTree.cpp -o libmaus2/util/la-IntervalTree.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/util/la-GenericIntervalTree.lo `test -f 'libmaus2/util/GenericIntervalTree.cpp' || echo './'`libmaus2/util/GenericIntervalTree.cpp libtool: compile: arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/util/GenericIntervalTree.cpp -fPIC -DPIC -o libmaus2/util/.libs/la-GenericIntervalTree.o libtool: compile: arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/util/GenericIntervalTree.cpp -o libmaus2/util/la-GenericIntervalTree.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/util/la-LogPipe.lo `test -f 'libmaus2/util/LogPipe.cpp' || echo './'`libmaus2/util/LogPipe.cpp libtool: compile: arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/util/LogPipe.cpp -fPIC -DPIC -o libmaus2/util/.libs/la-LogPipe.o libtool: compile: arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/util/LogPipe.cpp -o libmaus2/util/la-LogPipe.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/util/la-LogPipeMultiplex.lo `test -f 'libmaus2/util/LogPipeMultiplex.cpp' || echo './'`libmaus2/util/LogPipeMultiplex.cpp libtool: compile: arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/util/LogPipeMultiplex.cpp -fPIC -DPIC -o libmaus2/util/.libs/la-LogPipeMultiplex.o libtool: compile: arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/util/LogPipeMultiplex.cpp -o libmaus2/util/la-LogPipeMultiplex.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/util/la-LogPipeMultiplexGeneric.lo `test -f 'libmaus2/util/LogPipeMultiplexGeneric.cpp' || echo './'`libmaus2/util/LogPipeMultiplexGeneric.cpp libtool: compile: arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/util/LogPipeMultiplexGeneric.cpp -fPIC -DPIC -o libmaus2/util/.libs/la-LogPipeMultiplexGeneric.o libtool: compile: arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/util/LogPipeMultiplexGeneric.cpp -o libmaus2/util/la-LogPipeMultiplexGeneric.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/util/la-LookupIntervalTree.lo `test -f 'libmaus2/util/LookupIntervalTree.cpp' || echo './'`libmaus2/util/LookupIntervalTree.cpp libtool: compile: arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/util/LookupIntervalTree.cpp -fPIC -DPIC -o libmaus2/util/.libs/la-LookupIntervalTree.o libtool: compile: arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/util/LookupIntervalTree.cpp -o libmaus2/util/la-LookupIntervalTree.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/digest/la-md5_interface.lo `test -f 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'./'`libmaus2/util/Utf8BlockIndex.cpp libtool: compile: arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/util/Utf8BlockIndex.cpp -fPIC -DPIC -o libmaus2/util/.libs/la-Utf8BlockIndex.o In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/GetFileSize.hpp:25, from ./libmaus2/util/Utf8BlockIndex.hpp:22, from libmaus2/util/Utf8BlockIndex.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/GetFileSize.hpp:25, from ./libmaus2/util/Utf8BlockIndex.hpp:22, from libmaus2/util/Utf8BlockIndex.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In static member function ‘static libmaus2::util::Utf8BlockIndex::unique_ptr_type libmaus2::util::Utf8BlockIndex::constructFromUtf8File(const string&, uint64_t, uint64_t)’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ 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compile: arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/dazzler/align/Path.cpp -o libmaus2/dazzler/align/la-Path.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/dazzler/align/la-Overlap.lo `test -f 'libmaus2/dazzler/align/Overlap.cpp' || echo './'`libmaus2/dazzler/align/Overlap.cpp libtool: compile: arm-linux-gnueabi-g++ -DHAVE_CONFIG_H 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-D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/lcs/la-AlignmentStatistics.lo `test -f 'libmaus2/lcs/AlignmentStatistics.cpp' || echo './'`libmaus2/lcs/AlignmentStatistics.cpp libtool: compile: arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/lcs/AlignmentStatistics.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/la-AlignmentStatistics.o libtool: compile: arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W 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-fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/util/la-LongestIncreasingSubsequenceExtendedResult.lo `test -f 'libmaus2/util/LongestIncreasingSubsequenceExtendedResult.cpp' || echo './'`libmaus2/util/LongestIncreasingSubsequenceExtendedResult.cpp libtool: compile: arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/util/LongestIncreasingSubsequenceExtendedResult.cpp -fPIC -DPIC -o libmaus2/util/.libs/la-LongestIncreasingSubsequenceExtendedResult.o libtool: compile: arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/util/LongestIncreasingSubsequenceExtendedResult.cpp -o libmaus2/util/la-LongestIncreasingSubsequenceExtendedResult.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/lcs/la-AlignerFactory.lo `test -f 'libmaus2/lcs/AlignerFactory.cpp' || echo './'`libmaus2/lcs/AlignerFactory.cpp libtool: compile: arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/lcs/AlignerFactory.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/la-AlignerFactory.o In file included from libmaus2/lcs/AlignerFactory.cpp:29: ./libmaus2/lcs/NP.hpp: In instantiation of ‘int64_t libmaus2::lcs::NP::npTemplate(iter_a, iter_a, iter_b, iter_b) [with iter_a = const unsigned char*; iter_b = const unsigned char*; bool self_check = true; int64_t = long long int]’: ./libmaus2/lcs/NP.hpp:116:53: required from ‘int64_t libmaus2::lcs::NP::np(iter_a, iter_a, iter_b, iter_b, bool) [with iter_a = const unsigned char*; iter_b = const unsigned char*; int64_t = long long int]’ ./libmaus2/lcs/NP.hpp:104:23: required from here ./libmaus2/lcs/NP.hpp:908:46: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘long long int’ [-Wsign-compare] if ( AlignmentTraceContainer::capacity() <= std::min(an,bn)+ed ) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ ./libmaus2/lcs/NP.hpp: In instantiation of ‘int64_t libmaus2::lcs::NP::npTemplate(iter_a, iter_a, iter_b, iter_b) [with iter_a = const unsigned char*; iter_b = const unsigned char*; bool self_check = false; int64_t = long long int]’: ./libmaus2/lcs/NP.hpp:118:54: required from ‘int64_t libmaus2::lcs::NP::np(iter_a, iter_a, iter_b, iter_b, bool) [with iter_a = const unsigned char*; iter_b = const unsigned char*; int64_t = long long int]’ ./libmaus2/lcs/NP.hpp:104:23: required from here ./libmaus2/lcs/NP.hpp:908:46: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘long long int’ [-Wsign-compare] libtool: compile: arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall 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-c libmaus2/fastx/DNAIndexMetaDataBigBand.cpp -fPIC -DPIC -o libmaus2/fastx/.libs/la-DNAIndexMetaDataBigBand.o libtool: compile: arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/fastx/DNAIndexMetaDataBigBand.cpp -o libmaus2/fastx/la-DNAIndexMetaDataBigBand.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/fastx/la-DNAIndexMetaDataBigBandBiDir.lo `test -f 'libmaus2/fastx/DNAIndexMetaDataBigBandBiDir.cpp' || echo './'`libmaus2/fastx/DNAIndexMetaDataBigBandBiDir.cpp libtool: compile: arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/fastx/DNAIndexMetaDataBigBandBiDir.cpp -fPIC -DPIC -o libmaus2/fastx/.libs/la-DNAIndexMetaDataBigBandBiDir.o libtool: compile: arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/fastx/DNAIndexMetaDataBigBandBiDir.cpp -o libmaus2/fastx/la-DNAIndexMetaDataBigBandBiDir.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/lcs/la-EnvelopeFragment.lo `test -f 'libmaus2/lcs/EnvelopeFragment.cpp' || echo './'`libmaus2/lcs/EnvelopeFragment.cpp libtool: compile: arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/lcs/EnvelopeFragment.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/la-EnvelopeFragment.o libtool: compile: arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/lcs/EnvelopeFragment.cpp -o libmaus2/lcs/la-EnvelopeFragment.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/rank/la-DNARankBiDirRange.lo `test -f 'libmaus2/rank/DNARankBiDirRange.cpp' || echo './'`libmaus2/rank/DNARankBiDirRange.cpp libtool: compile: arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/rank/DNARankBiDirRange.cpp -fPIC -DPIC -o libmaus2/rank/.libs/la-DNARankBiDirRange.o libtool: compile: arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/rank/DNARankBiDirRange.cpp -o libmaus2/rank/la-DNARankBiDirRange.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/lcs/la-NNPTraceElement.lo `test -f 'libmaus2/lcs/NNPTraceElement.cpp' || echo './'`libmaus2/lcs/NNPTraceElement.cpp libtool: compile: arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/lcs/NNPTraceElement.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/la-NNPTraceElement.o libtool: compile: arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/lcs/NNPTraceElement.cpp -o libmaus2/lcs/la-NNPTraceElement.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/lcs/la-NNPTraceContainer.lo `test -f 'libmaus2/lcs/NNPTraceContainer.cpp' || echo './'`libmaus2/lcs/NNPTraceContainer.cpp libtool: compile: arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/lcs/NNPTraceContainer.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/la-NNPTraceContainer.o libtool: compile: arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/lcs/NNPTraceContainer.cpp -o libmaus2/lcs/la-NNPTraceContainer.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/lcs/la-NNPAlignResult.lo `test -f 'libmaus2/lcs/NNPAlignResult.cpp' || echo './'`libmaus2/lcs/NNPAlignResult.cpp libtool: compile: arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/lcs/NNPAlignResult.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/la-NNPAlignResult.o libtool: compile: arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/lcs/NNPAlignResult.cpp -o libmaus2/lcs/la-NNPAlignResult.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/suffixsort/bwtb3m/la-MergeStrategyMergeGapRequest.lo `test -f 'libmaus2/suffixsort/bwtb3m/MergeStrategyMergeGapRequest.cpp' || echo './'`libmaus2/suffixsort/bwtb3m/MergeStrategyMergeGapRequest.cpp libtool: compile: arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/MergeStrategyMergeGapRequest.cpp -fPIC -DPIC -o libmaus2/suffixsort/bwtb3m/.libs/la-MergeStrategyMergeGapRequest.o libtool: compile: arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/MergeStrategyMergeGapRequest.cpp -o libmaus2/suffixsort/bwtb3m/la-MergeStrategyMergeGapRequest.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/suffixsort/bwtb3m/la-BwtMergeSort.lo `test -f 'libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp' || echo './'`libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp libtool: compile: arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp -fPIC -DPIC -o libmaus2/suffixsort/bwtb3m/.libs/la-BwtMergeSort.o In file included from /usr/arm-linux-gnueabi/include/c++/8/cassert:44, from ./libmaus2/suffixsort/divsufsort.hpp:32, from ./libmaus2/util/Utf8String.hpp:27, from ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:25, from ./libmaus2/wavelet/RlToHwtBase.hpp:30, from ./libmaus2/wavelet/RlToHwtTermRequest.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:37, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: ./libmaus2/wavelet/RlToHwtBase.hpp: In instantiation of ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtSmallAlphabet(const string&, const libmaus2::huffman::HuffmanTree&, uint64_t) [with entity_type = unsigned char; bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::__cxx11::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1398:105: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwt(const string&, const string&, std::__cxx11::string, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::__cxx11::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:5104:65: required from ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeBwt(const libmaus2::suffixsort::bwtb3m::BwtMergeSortOptions&, std::ostream*) [with input_types_type = libmaus2::suffixsort::ByteInputTypes; std::ostream = std::basic_ostream]’ libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:45:71: required from here ./libmaus2/wavelet/RlToHwtBase.hpp:809:46: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] assert ( symtonodesp-symtonodes.begin() == symtonodevecoffsets[sym] ); ./libmaus2/wavelet/RlToHwtBase.hpp: In instantiation of ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtSmallAlphabet(const string&, const libmaus2::huffman::HuffmanTree&, uint64_t) [with entity_type = short unsigned int; bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::__cxx11::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1407:106: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwt(const string&, const string&, std::__cxx11::string, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::__cxx11::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:5104:65: required from ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeBwt(const libmaus2::suffixsort::bwtb3m::BwtMergeSortOptions&, std::ostream*) [with input_types_type = libmaus2::suffixsort::ByteInputTypes; std::ostream = std::basic_ostream]’ libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:45:71: required from here ./libmaus2/wavelet/RlToHwtBase.hpp:809:46: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] ./libmaus2/wavelet/RlToHwtBase.hpp: In instantiation of ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtSmallAlphabet(const string&, const libmaus2::huffman::HuffmanTree&, uint64_t) [with entity_type = unsigned int; bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::__cxx11::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1416:106: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwt(const string&, const string&, std::__cxx11::string, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::__cxx11::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:5104:65: required from ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeBwt(const libmaus2::suffixsort::bwtb3m::BwtMergeSortOptions&, std::ostream*) [with input_types_type = libmaus2::suffixsort::ByteInputTypes; std::ostream = std::basic_ostream]’ libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:45:71: required from here ./libmaus2/wavelet/RlToHwtBase.hpp:809:46: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] ./libmaus2/wavelet/RlToHwtBase.hpp: In instantiation of ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtSmallAlphabet(const string&, const libmaus2::huffman::HuffmanTree&, uint64_t) [with entity_type = long long unsigned int; bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::__cxx11::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1425:106: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwt(const string&, const string&, std::__cxx11::string, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::__cxx11::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:5104:65: required from ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeBwt(const libmaus2::suffixsort::bwtb3m::BwtMergeSortOptions&, std::ostream*) [with input_types_type = libmaus2::suffixsort::ByteInputTypes; std::ostream = std::basic_ostream]’ libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:45:71: required from here ./libmaus2/wavelet/RlToHwtBase.hpp:809:46: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] ./libmaus2/wavelet/RlToHwtBase.hpp: In instantiation of ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtSmallAlphabet(const string&, const libmaus2::huffman::HuffmanTree&, uint64_t) [with entity_type = unsigned char; bool _utf8_input_type = false; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::__cxx11::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1398:105: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwt(const string&, const string&, std::__cxx11::string, uint64_t) [with bool _utf8_input_type = false; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::__cxx11::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:5111:66: required from ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeBwt(const libmaus2::suffixsort::bwtb3m::BwtMergeSortOptions&, std::ostream*) [with input_types_type = libmaus2::suffixsort::ByteInputTypes; std::ostream = std::basic_ostream]’ libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:45:71: required from here ./libmaus2/wavelet/RlToHwtBase.hpp:809:46: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] ./libmaus2/wavelet/RlToHwtBase.hpp: In instantiation of ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtSmallAlphabet(const string&, const libmaus2::huffman::HuffmanTree&, uint64_t) [with entity_type = short unsigned int; bool _utf8_input_type = false; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::__cxx11::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1407:106: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwt(const string&, const string&, std::__cxx11::string, uint64_t) [with bool _utf8_input_type = false; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::__cxx11::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:5111:66: required from ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeBwt(const libmaus2::suffixsort::bwtb3m::BwtMergeSortOptions&, std::ostream*) [with input_types_type = libmaus2::suffixsort::ByteInputTypes; std::ostream = std::basic_ostream]’ libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:45:71: required from here ./libmaus2/wavelet/RlToHwtBase.hpp:809:46: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] ./libmaus2/wavelet/RlToHwtBase.hpp: In instantiation of ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtSmallAlphabet(const string&, const libmaus2::huffman::HuffmanTree&, uint64_t) [with entity_type = unsigned int; bool _utf8_input_type = false; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::__cxx11::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1416:106: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwt(const string&, const string&, std::__cxx11::string, uint64_t) [with bool _utf8_input_type = false; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::__cxx11::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:5111:66: required from ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeBwt(const libmaus2::suffixsort::bwtb3m::BwtMergeSortOptions&, std::ostream*) [with input_types_type = libmaus2::suffixsort::ByteInputTypes; std::ostream = std::basic_ostream]’ libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:45:71: required from here ./libmaus2/wavelet/RlToHwtBase.hpp:809:46: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] ./libmaus2/wavelet/RlToHwtBase.hpp: In instantiation of ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtSmallAlphabet(const string&, const libmaus2::huffman::HuffmanTree&, uint64_t) [with entity_type = long long unsigned int; bool _utf8_input_type = false; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::__cxx11::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1425:106: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwt(const string&, const string&, std::__cxx11::string, uint64_t) [with bool _utf8_input_type = false; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::__cxx11::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:5111:66: required from ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeBwt(const libmaus2::suffixsort::bwtb3m::BwtMergeSortOptions&, std::ostream*) [with input_types_type = libmaus2::suffixsort::ByteInputTypes; std::ostream = std::basic_ostream]’ libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:45:71: required from here ./libmaus2/wavelet/RlToHwtBase.hpp:809:46: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] ./libmaus2/wavelet/RlToHwtBase.hpp: In instantiation of ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtTermSmallAlphabet(const std::vector >&, const string&, uint64_t, uint64_t, uint64_t) [with entity_type = unsigned char; bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::__cxx11::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1656:111: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtTerm(const std::vector >&, const string&, std::__cxx11::string, std::__cxx11::string, uint64_t, uint64_t, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::__cxx11::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’ ./libmaus2/wavelet/RlToHwtTermRequest.hpp:118:67: required from ‘libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtTermRequest::dispatch() [with rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >]’ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:1225:102: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::ensureWaveletTreeGenerated(const libmaus2::suffixsort::BwtMergeBlockSortResult&, std::ostream*) [with input_types_type = libmaus2::suffixsort::ByteInputTypes; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::ostream = std::basic_ostream]’ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:1289:105: required from ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::GapArrayComputationResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeGapArray(libmaus2::util::TempFileNameGenerator&, const string&, uint64_t, uint64_t, uint64_t, uint64_t, uint64_t, const libmaus2::suffixsort::BwtMergeBlockSortResult&, const std::vector >&, libmaus2::lf::DArray*, const std::vector&, uint64_t, std::ostream*, int) [with input_types_type = libmaus2::suffixsort::ByteInputTypes; std::__cxx11::string = std::__cxx11::basic_string; uint64_t = long long unsigned int; std::ostream = std::basic_ostream]’ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:1460:28: required from ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::GapArrayComputationResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeGapArray(libmaus2::util::TempFileNameGenerator&, const string&, uint64_t, const libmaus2::suffixsort::bwtb3m::MergeStrategyMergeGapRequest&, const std::vector >&, libmaus2::lf::DArray*, uint64_t, std::ostream*, int) [with input_types_type = libmaus2::suffixsort::ByteInputTypes; std::__cxx11::string = std::__cxx11::basic_string; uint64_t = long long unsigned int; std::ostream = std::basic_ostream]’ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:2244:61: required from ‘static void libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::mergeBlocks(libmaus2::util::TempFileNameGenerator&, libmaus2::suffixsort::bwtb3m::MergeStrategyMergeInternalBlock&, std::__cxx11::string, uint64_t, uint64_t, uint64_t, uint64_t, const std::map&, uint64_t, const string&, std::ostream*, int) [with input_types_type = libmaus2::suffixsort::ByteInputTypes; std::__cxx11::string = std::__cxx11::basic_string; uint64_t = long long unsigned int; std::ostream = std::basic_ostream]’ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:4964:19: required from ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeBwt(const libmaus2::suffixsort::bwtb3m::BwtMergeSortOptions&, std::ostream*) [with input_types_type = libmaus2::suffixsort::ByteInputTypes; std::ostream = std::basic_ostream]’ libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:45:71: required from here ./libmaus2/wavelet/RlToHwtBase.hpp:234:46: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] assert ( symtonodesp-symtonodes.begin() == symtonodevecoffsets[sym] ); ./libmaus2/wavelet/RlToHwtBase.hpp: In instantiation of ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtTermSmallAlphabet(const std::vector >&, const string&, uint64_t, uint64_t, uint64_t) [with entity_type = short unsigned int; bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::__cxx11::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1662:112: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtTerm(const std::vector >&, const string&, std::__cxx11::string, std::__cxx11::string, uint64_t, uint64_t, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::__cxx11::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’ ./libmaus2/wavelet/RlToHwtTermRequest.hpp:118:67: required from ‘libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtTermRequest::dispatch() [with rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >]’ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:1225:102: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::ensureWaveletTreeGenerated(const libmaus2::suffixsort::BwtMergeBlockSortResult&, std::ostream*) [with input_types_type = libmaus2::suffixsort::ByteInputTypes; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::ostream = std::basic_ostream]’ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:1289:105: required from ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::GapArrayComputationResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeGapArray(libmaus2::util::TempFileNameGenerator&, const string&, uint64_t, uint64_t, uint64_t, uint64_t, uint64_t, const libmaus2::suffixsort::BwtMergeBlockSortResult&, const std::vector >&, libmaus2::lf::DArray*, const std::vector&, uint64_t, std::ostream*, int) [with input_types_type = libmaus2::suffixsort::ByteInputTypes; std::__cxx11::string = std::__cxx11::basic_string; uint64_t = long long unsigned int; std::ostream = std::basic_ostream]’ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:1460:28: required from ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::GapArrayComputationResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeGapArray(libmaus2::util::TempFileNameGenerator&, const string&, uint64_t, const libmaus2::suffixsort::bwtb3m::MergeStrategyMergeGapRequest&, const std::vector >&, libmaus2::lf::DArray*, uint64_t, std::ostream*, int) [with input_types_type = libmaus2::suffixsort::ByteInputTypes; std::__cxx11::string = std::__cxx11::basic_string; uint64_t = long long unsigned int; std::ostream = std::basic_ostream]’ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:2244:61: required from ‘static void libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::mergeBlocks(libmaus2::util::TempFileNameGenerator&, libmaus2::suffixsort::bwtb3m::MergeStrategyMergeInternalBlock&, std::__cxx11::string, uint64_t, uint64_t, uint64_t, uint64_t, const std::map&, uint64_t, const string&, std::ostream*, int) [with input_types_type = libmaus2::suffixsort::ByteInputTypes; std::__cxx11::string = std::__cxx11::basic_string; uint64_t = long long unsigned int; std::ostream = std::basic_ostream]’ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:4964:19: required from ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeBwt(const libmaus2::suffixsort::bwtb3m::BwtMergeSortOptions&, std::ostream*) [with input_types_type = libmaus2::suffixsort::ByteInputTypes; std::ostream = std::basic_ostream]’ libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:45:71: required from here ./libmaus2/wavelet/RlToHwtBase.hpp:234:46: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] ./libmaus2/wavelet/RlToHwtBase.hpp: In instantiation of ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtTermSmallAlphabet(const std::vector >&, const string&, uint64_t, uint64_t, uint64_t) [with entity_type = unsigned int; bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::__cxx11::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1668:112: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtTerm(const std::vector >&, const string&, std::__cxx11::string, std::__cxx11::string, uint64_t, uint64_t, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::__cxx11::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’ ./libmaus2/wavelet/RlToHwtTermRequest.hpp:118:67: required from ‘libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtTermRequest::dispatch() [with rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >]’ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:1225:102: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::ensureWaveletTreeGenerated(const libmaus2::suffixsort::BwtMergeBlockSortResult&, std::ostream*) [with input_types_type = libmaus2::suffixsort::ByteInputTypes; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::ostream = std::basic_ostream]’ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:1289:105: required from ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::GapArrayComputationResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeGapArray(libmaus2::util::TempFileNameGenerator&, const string&, uint64_t, uint64_t, uint64_t, uint64_t, uint64_t, const libmaus2::suffixsort::BwtMergeBlockSortResult&, const std::vector >&, libmaus2::lf::DArray*, const std::vector&, uint64_t, std::ostream*, int) [with input_types_type = libmaus2::suffixsort::ByteInputTypes; std::__cxx11::string = std::__cxx11::basic_string; uint64_t = long long unsigned int; std::ostream = std::basic_ostream]’ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:1460:28: required from ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::GapArrayComputationResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeGapArray(libmaus2::util::TempFileNameGenerator&, const string&, uint64_t, const libmaus2::suffixsort::bwtb3m::MergeStrategyMergeGapRequest&, const std::vector >&, libmaus2::lf::DArray*, uint64_t, std::ostream*, int) [with input_types_type = libmaus2::suffixsort::ByteInputTypes; std::__cxx11::string = std::__cxx11::basic_string; uint64_t = long long unsigned int; std::ostream = std::basic_ostream]’ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:2244:61: required from ‘static void libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::mergeBlocks(libmaus2::util::TempFileNameGenerator&, libmaus2::suffixsort::bwtb3m::MergeStrategyMergeInternalBlock&, std::__cxx11::string, uint64_t, uint64_t, uint64_t, uint64_t, const std::map&, uint64_t, const string&, std::ostream*, int) [with input_types_type = libmaus2::suffixsort::ByteInputTypes; std::__cxx11::string = std::__cxx11::basic_string; uint64_t = long long unsigned int; std::ostream = std::basic_ostream]’ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:4964:19: required from ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeBwt(const libmaus2::suffixsort::bwtb3m::BwtMergeSortOptions&, std::ostream*) [with input_types_type = libmaus2::suffixsort::ByteInputTypes; std::ostream = std::basic_ostream]’ libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:45:71: required from here ./libmaus2/wavelet/RlToHwtBase.hpp:234:46: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] ./libmaus2/wavelet/RlToHwtBase.hpp: In instantiation of ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtTermSmallAlphabet(const std::vector >&, const string&, uint64_t, uint64_t, uint64_t) [with entity_type = long long unsigned int; bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::__cxx11::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1674:112: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtTerm(const std::vector >&, const string&, std::__cxx11::string, std::__cxx11::string, uint64_t, uint64_t, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::__cxx11::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’ ./libmaus2/wavelet/RlToHwtTermRequest.hpp:118:67: required from ‘libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtTermRequest::dispatch() [with rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >]’ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:1225:102: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::ensureWaveletTreeGenerated(const libmaus2::suffixsort::BwtMergeBlockSortResult&, std::ostream*) [with input_types_type = libmaus2::suffixsort::ByteInputTypes; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::ostream = std::basic_ostream]’ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:1289:105: required from ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::GapArrayComputationResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeGapArray(libmaus2::util::TempFileNameGenerator&, const string&, uint64_t, uint64_t, uint64_t, uint64_t, uint64_t, const libmaus2::suffixsort::BwtMergeBlockSortResult&, const std::vector >&, libmaus2::lf::DArray*, const std::vector&, uint64_t, std::ostream*, int) [with input_types_type = libmaus2::suffixsort::ByteInputTypes; std::__cxx11::string = std::__cxx11::basic_string; uint64_t = long long unsigned int; std::ostream = std::basic_ostream]’ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:1460:28: required from ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::GapArrayComputationResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeGapArray(libmaus2::util::TempFileNameGenerator&, const string&, uint64_t, const libmaus2::suffixsort::bwtb3m::MergeStrategyMergeGapRequest&, const std::vector >&, libmaus2::lf::DArray*, uint64_t, std::ostream*, int) [with input_types_type = libmaus2::suffixsort::ByteInputTypes; std::__cxx11::string = std::__cxx11::basic_string; uint64_t = long long unsigned int; std::ostream = std::basic_ostream]’ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:2244:61: required from ‘static void libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::mergeBlocks(libmaus2::util::TempFileNameGenerator&, libmaus2::suffixsort::bwtb3m::MergeStrategyMergeInternalBlock&, std::__cxx11::string, uint64_t, uint64_t, uint64_t, uint64_t, const std::map&, uint64_t, const string&, std::ostream*, int) [with input_types_type = libmaus2::suffixsort::ByteInputTypes; std::__cxx11::string = std::__cxx11::basic_string; uint64_t = long long unsigned int; std::ostream = std::basic_ostream]’ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:4964:19: required from ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeBwt(const libmaus2::suffixsort::bwtb3m::BwtMergeSortOptions&, std::ostream*) [with input_types_type = libmaus2::suffixsort::ByteInputTypes; std::ostream = std::basic_ostream]’ libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:45:71: required from here ./libmaus2/wavelet/RlToHwtBase.hpp:234:46: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] ./libmaus2/wavelet/RlToHwtBase.hpp: In instantiation of ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtTermSmallAlphabet(const std::vector >&, const string&, uint64_t, uint64_t, uint64_t) [with entity_type = unsigned char; bool _utf8_input_type = false; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::__cxx11::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1656:111: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtTerm(const std::vector >&, const string&, std::__cxx11::string, std::__cxx11::string, uint64_t, uint64_t, uint64_t) [with bool _utf8_input_type = false; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::__cxx11::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’ ./libmaus2/wavelet/RlToHwtTermRequest.hpp:125:68: required from ‘libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtTermRequest::dispatch() [with rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >]’ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:1225:102: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::ensureWaveletTreeGenerated(const libmaus2::suffixsort::BwtMergeBlockSortResult&, std::ostream*) [with input_types_type = libmaus2::suffixsort::ByteInputTypes; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::ostream = std::basic_ostream]’ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:1289:105: required from ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::GapArrayComputationResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeGapArray(libmaus2::util::TempFileNameGenerator&, const string&, uint64_t, uint64_t, uint64_t, uint64_t, uint64_t, const libmaus2::suffixsort::BwtMergeBlockSortResult&, const std::vector >&, libmaus2::lf::DArray*, const std::vector&, uint64_t, std::ostream*, int) [with input_types_type = libmaus2::suffixsort::ByteInputTypes; std::__cxx11::string = std::__cxx11::basic_string; uint64_t = long long unsigned int; std::ostream = std::basic_ostream]’ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:1460:28: required from ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::GapArrayComputationResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeGapArray(libmaus2::util::TempFileNameGenerator&, const string&, uint64_t, const libmaus2::suffixsort::bwtb3m::MergeStrategyMergeGapRequest&, const std::vector >&, libmaus2::lf::DArray*, uint64_t, std::ostream*, int) [with input_types_type = libmaus2::suffixsort::ByteInputTypes; std::__cxx11::string = std::__cxx11::basic_string; uint64_t = long long unsigned int; std::ostream = std::basic_ostream]’ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:2244:61: required from ‘static void libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::mergeBlocks(libmaus2::util::TempFileNameGenerator&, libmaus2::suffixsort::bwtb3m::MergeStrategyMergeInternalBlock&, std::__cxx11::string, uint64_t, uint64_t, uint64_t, uint64_t, const std::map&, uint64_t, const string&, std::ostream*, int) [with input_types_type = libmaus2::suffixsort::ByteInputTypes; std::__cxx11::string = std::__cxx11::basic_string; uint64_t = long long unsigned int; std::ostream = std::basic_ostream]’ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:4964:19: required from ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeBwt(const libmaus2::suffixsort::bwtb3m::BwtMergeSortOptions&, std::ostream*) [with input_types_type = libmaus2::suffixsort::ByteInputTypes; std::ostream = std::basic_ostream]’ libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:45:71: required from here ./libmaus2/wavelet/RlToHwtBase.hpp:234:46: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] ./libmaus2/wavelet/RlToHwtBase.hpp: In instantiation of ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtTermSmallAlphabet(const std::vector >&, const string&, uint64_t, uint64_t, uint64_t) [with entity_type = short unsigned int; bool _utf8_input_type = false; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::__cxx11::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1662:112: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtTerm(const std::vector >&, const string&, std::__cxx11::string, std::__cxx11::string, uint64_t, uint64_t, uint64_t) [with bool _utf8_input_type = false; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::__cxx11::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’ ./libmaus2/wavelet/RlToHwtTermRequest.hpp:125:68: required from ‘libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtTermRequest::dispatch() [with rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >]’ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:1225:102: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::ensureWaveletTreeGenerated(const libmaus2::suffixsort::BwtMergeBlockSortResult&, std::ostream*) [with input_types_type = libmaus2::suffixsort::ByteInputTypes; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::ostream = std::basic_ostream]’ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:1289:105: required from ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::GapArrayComputationResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeGapArray(libmaus2::util::TempFileNameGenerator&, const string&, uint64_t, uint64_t, uint64_t, uint64_t, uint64_t, const libmaus2::suffixsort::BwtMergeBlockSortResult&, const std::vector >&, libmaus2::lf::DArray*, const std::vector&, uint64_t, std::ostream*, int) [with input_types_type = libmaus2::suffixsort::ByteInputTypes; std::__cxx11::string = std::__cxx11::basic_string; uint64_t = long long unsigned int; std::ostream = std::basic_ostream]’ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:1460:28: required from ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::GapArrayComputationResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeGapArray(libmaus2::util::TempFileNameGenerator&, const string&, uint64_t, const libmaus2::suffixsort::bwtb3m::MergeStrategyMergeGapRequest&, const std::vector >&, libmaus2::lf::DArray*, uint64_t, std::ostream*, int) [with input_types_type = libmaus2::suffixsort::ByteInputTypes; std::__cxx11::string = std::__cxx11::basic_string; uint64_t = long long unsigned int; std::ostream = std::basic_ostream]’ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:2244:61: required from ‘static void libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::mergeBlocks(libmaus2::util::TempFileNameGenerator&, libmaus2::suffixsort::bwtb3m::MergeStrategyMergeInternalBlock&, std::__cxx11::string, uint64_t, uint64_t, uint64_t, uint64_t, const std::map&, uint64_t, const string&, std::ostream*, int) [with input_types_type = libmaus2::suffixsort::ByteInputTypes; std::__cxx11::string = std::__cxx11::basic_string; uint64_t = long long unsigned int; std::ostream = std::basic_ostream]’ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:4964:19: required from ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeBwt(const libmaus2::suffixsort::bwtb3m::BwtMergeSortOptions&, std::ostream*) [with input_types_type = libmaus2::suffixsort::ByteInputTypes; std::ostream = std::basic_ostream]’ libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:45:71: required from here ./libmaus2/wavelet/RlToHwtBase.hpp:234:46: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] ./libmaus2/wavelet/RlToHwtBase.hpp: In instantiation of ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtTermSmallAlphabet(const std::vector >&, const string&, uint64_t, uint64_t, uint64_t) [with entity_type = unsigned int; bool _utf8_input_type = false; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::__cxx11::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1668:112: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtTerm(const std::vector >&, const string&, std::__cxx11::string, std::__cxx11::string, uint64_t, uint64_t, uint64_t) [with bool _utf8_input_type = false; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::__cxx11::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’ ./libmaus2/wavelet/RlToHwtTermRequest.hpp:125:68: required from ‘libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtTermRequest::dispatch() [with rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >]’ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:1225:102: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::ensureWaveletTreeGenerated(const libmaus2::suffixsort::BwtMergeBlockSortResult&, std::ostream*) [with input_types_type = libmaus2::suffixsort::ByteInputTypes; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::ostream = std::basic_ostream]’ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:1289:105: required from ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::GapArrayComputationResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeGapArray(libmaus2::util::TempFileNameGenerator&, const string&, uint64_t, uint64_t, uint64_t, uint64_t, uint64_t, const libmaus2::suffixsort::BwtMergeBlockSortResult&, const std::vector >&, libmaus2::lf::DArray*, const std::vector&, uint64_t, std::ostream*, int) [with input_types_type = libmaus2::suffixsort::ByteInputTypes; std::__cxx11::string = std::__cxx11::basic_string; uint64_t = long long unsigned int; std::ostream = std::basic_ostream]’ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:1460:28: required from ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::GapArrayComputationResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeGapArray(libmaus2::util::TempFileNameGenerator&, const string&, uint64_t, const libmaus2::suffixsort::bwtb3m::MergeStrategyMergeGapRequest&, const std::vector >&, libmaus2::lf::DArray*, uint64_t, std::ostream*, int) [with input_types_type = libmaus2::suffixsort::ByteInputTypes; std::__cxx11::string = std::__cxx11::basic_string; uint64_t = long long unsigned int; std::ostream = std::basic_ostream]’ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:2244:61: required from ‘static void libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::mergeBlocks(libmaus2::util::TempFileNameGenerator&, libmaus2::suffixsort::bwtb3m::MergeStrategyMergeInternalBlock&, std::__cxx11::string, uint64_t, uint64_t, uint64_t, uint64_t, const std::map&, uint64_t, const string&, std::ostream*, int) [with input_types_type = libmaus2::suffixsort::ByteInputTypes; std::__cxx11::string = std::__cxx11::basic_string; uint64_t = long long unsigned int; std::ostream = std::basic_ostream]’ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:4964:19: required from ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeBwt(const libmaus2::suffixsort::bwtb3m::BwtMergeSortOptions&, std::ostream*) [with input_types_type = libmaus2::suffixsort::ByteInputTypes; std::ostream = std::basic_ostream]’ libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:45:71: required from here ./libmaus2/wavelet/RlToHwtBase.hpp:234:46: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] ./libmaus2/wavelet/RlToHwtBase.hpp: In instantiation of ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtTermSmallAlphabet(const std::vector >&, const string&, uint64_t, uint64_t, uint64_t) [with entity_type = long long unsigned int; bool _utf8_input_type = false; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::__cxx11::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1674:112: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtTerm(const std::vector >&, const string&, std::__cxx11::string, std::__cxx11::string, uint64_t, uint64_t, uint64_t) [with bool _utf8_input_type = false; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::__cxx11::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’ ./libmaus2/wavelet/RlToHwtTermRequest.hpp:125:68: required from ‘libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtTermRequest::dispatch() [with rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >]’ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:1225:102: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::ensureWaveletTreeGenerated(const libmaus2::suffixsort::BwtMergeBlockSortResult&, std::ostream*) [with input_types_type = libmaus2::suffixsort::ByteInputTypes; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::ostream = std::basic_ostream]’ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:1289:105: required from ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::GapArrayComputationResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeGapArray(libmaus2::util::TempFileNameGenerator&, const string&, uint64_t, uint64_t, uint64_t, uint64_t, uint64_t, const libmaus2::suffixsort::BwtMergeBlockSortResult&, const std::vector >&, libmaus2::lf::DArray*, const std::vector&, uint64_t, std::ostream*, int) [with input_types_type = libmaus2::suffixsort::ByteInputTypes; std::__cxx11::string = std::__cxx11::basic_string; uint64_t = long long unsigned int; std::ostream = std::basic_ostream]’ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:1460:28: required from ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::GapArrayComputationResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeGapArray(libmaus2::util::TempFileNameGenerator&, const string&, uint64_t, const libmaus2::suffixsort::bwtb3m::MergeStrategyMergeGapRequest&, const std::vector >&, libmaus2::lf::DArray*, uint64_t, std::ostream*, int) [with input_types_type = libmaus2::suffixsort::ByteInputTypes; std::__cxx11::string = std::__cxx11::basic_string; uint64_t = long long unsigned int; std::ostream = std::basic_ostream]’ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:2244:61: required from ‘static void libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::mergeBlocks(libmaus2::util::TempFileNameGenerator&, libmaus2::suffixsort::bwtb3m::MergeStrategyMergeInternalBlock&, std::__cxx11::string, uint64_t, uint64_t, uint64_t, uint64_t, const std::map&, uint64_t, const string&, std::ostream*, int) [with input_types_type = libmaus2::suffixsort::ByteInputTypes; std::__cxx11::string = std::__cxx11::basic_string; uint64_t = long long unsigned int; std::ostream = std::basic_ostream]’ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:4964:19: required from ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeBwt(const libmaus2::suffixsort::bwtb3m::BwtMergeSortOptions&, std::ostream*) [with input_types_type = libmaus2::suffixsort::ByteInputTypes; std::ostream = std::basic_ostream]’ libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:45:71: required from here ./libmaus2/wavelet/RlToHwtBase.hpp:234:46: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/huffman/IndexWriter.hpp:22, from ./libmaus2/huffman/RLEncoder.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long int&}; _Tp = long long int; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/huffman/IndexWriter.hpp:22, from ./libmaus2/huffman/RLEncoder.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long int; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In member function ‘virtual void libmaus2::huffman::HuffmanTreeLeaf::symbolVector(std::vector&) const’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/huffman/IndexWriter.hpp:22, from ./libmaus2/huffman/RLEncoder.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/huffman/IndexWriter.hpp:22, from ./libmaus2/huffman/RLEncoder.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In member function ‘virtual void libmaus2::suffixsort::bwtb3m::MergeStrategyBaseBlock::registerQueryPositions(const std::vector&)’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In member function ‘virtual void libmaus2::huffman::HuffmanTreeLeaf::depthVector(std::vector&, uint64_t) const’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/huffman/IndexWriter.hpp:22, from ./libmaus2/huffman/RLEncoder.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::huffman::IndexEntry&}; _Tp = libmaus2::huffman::IndexEntry; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector > >’} changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::huffman::IndexEntry}; _Tp = libmaus2::huffman::IndexEntry; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::suffixsort::BwtMergeZBlock}; _Tp = libmaus2::suffixsort::BwtMergeZBlock; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 In file included from ./libmaus2/math/numbits.hpp:24, from ./libmaus2/huffman/IndexWriter.hpp:24, from ./libmaus2/huffman/RLEncoder.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: ./libmaus2/autoarray/AutoArray.hpp: In constructor ‘libmaus2::autoarray::AutoArray::AutoArray(uint64_t, bool) [with N = libmaus2::huffman::IndexEntry; libmaus2::autoarray::alloc_type atype = (libmaus2::autoarray::alloc_type)0; erase_type = libmaus2::autoarray::ArrayErase]’: ./libmaus2/autoarray/AutoArray.hpp:1801:5: warning: ‘’ may be used uninitialized in this function [-Wmaybe-uninitialized] array[i] = N(); ^~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/huffman/IndexWriter.hpp:22, from ./libmaus2/huffman/RLEncoder.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In member function ‘void libmaus2::suffixsort::GapArrayByte::saveGammaGapArray(const string&)’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In member function ‘uint64_t libmaus2::wavelet::ImpExternalWaveletGeneratorCompactHuffman::createFinalStream(stream_type&) [with stream_type = libmaus2::aio::OutputStreamInstance]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In static member function ‘static void libmaus2::huffman::RLEncoderTemplate<_huffmanencoderfile_type>::concatenate(const std::vector >&, const string&, bool) [with _huffmanencoderfile_type = libmaus2::huffman::HuffmanEncoderFileTemplate, libmaus2::bitio::FastWriteBitWriterTemplate >, 128, 255, false> >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/map:60, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/math/numbits.hpp:24, from ./libmaus2/huffman/IndexWriter.hpp:24, from ./libmaus2/huffman/RLEncoder.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = const libmaus2::huffman::HuffmanTreeLeaf*; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = const libmaus2::huffman::HuffmanTreeInnerNode*; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 In file included from /usr/arm-linux-gnueabi/include/c++/8/map:61, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/math/numbits.hpp:24, from ./libmaus2/huffman/IndexWriter.hpp:24, from ./libmaus2/huffman/RLEncoder.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h: In member function ‘virtual void libmaus2::huffman::HuffmanTreeInnerNode::toDot(std::ostream&) const’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/math/numbits.hpp:24, from ./libmaus2/huffman/IndexWriter.hpp:24, from ./libmaus2/huffman/RLEncoder.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_val::HeapOrderAdapter>]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/huffman/IndexWriter.hpp:22, from ./libmaus2/huffman/RLEncoder.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair, std::allocator >, long long unsigned int>}; _Tp = std::pair, long long unsigned int>; _Alloc = std::allocator, long long unsigned int> >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector, long long unsigned int> >::iterator’ {aka ‘__gnu_cxx::__normal_iterator, long long unsigned int>*, std::vector, long long unsigned int> > >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In function ‘_ZN8libmaus27wavelet49ImpExternalWaveletGeneratorCompactHuffmanParallel17createFinalStreamISoEEyRT_y._omp_fn.32’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator, long long unsigned int>*, std::vector, long long unsigned int> > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/map:60, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/math/numbits.hpp:24, from ./libmaus2/huffman/IndexWriter.hpp:24, from ./libmaus2/huffman/RLEncoder.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 In file included from /usr/arm-linux-gnueabi/include/c++/8/map:61, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/math/numbits.hpp:24, from ./libmaus2/huffman/IndexWriter.hpp:24, from ./libmaus2/huffman/RLEncoder.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h: In member function ‘virtual std::ostream& libmaus2::util::FileTempFileContainer::getOutputTempFile(uint64_t)’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h: In member function ‘virtual std::ostream& libmaus2::util::FileTempFileContainer::openOutputTempFile(uint64_t)’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabi/include/c++/8/map:60, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/math/numbits.hpp:24, from ./libmaus2/huffman/IndexWriter.hpp:24, from ./libmaus2/huffman/RLEncoder.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/map:61, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/math/numbits.hpp:24, from ./libmaus2/huffman/IndexWriter.hpp:24, from ./libmaus2/huffman/RLEncoder.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h: In member function ‘virtual std::istream& libmaus2::util::FileTempFileContainer::openInputTempFile(uint64_t)’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/math/numbits.hpp:24, from ./libmaus2/huffman/IndexWriter.hpp:24, from ./libmaus2/huffman/RLEncoder.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::HeapOrderAdapter>]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/huffman/IndexWriter.hpp:22, from ./libmaus2/huffman/RLEncoder.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In member function ‘int64_t libmaus2::util::KMP::BestPrefix::operator[](uint64_t) [with stream_type = std::basic_istream]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/math/numbits.hpp:24, from ./libmaus2/huffman/IndexWriter.hpp:24, from ./libmaus2/huffman/RLEncoder.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/huffman/IndexWriter.hpp:22, from ./libmaus2/huffman/RLEncoder.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In member function ‘void libmaus2::gamma::GammaGapEncoder::encode(iterator, uint64_t) [with iterator = const unsigned int*]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/huffman/IndexWriter.hpp:22, from ./libmaus2/huffman/RLEncoder.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair, std::pair >}; _Tp = std::pair, std::pair >; _Alloc = std::allocator, std::pair > >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector, std::pair > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator, std::pair >*, std::vector, std::pair > > >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair, std::pair >}; _Tp = std::pair, std::pair >; _Alloc = std::allocator, std::pair > >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator, std::pair >*, std::vector, std::pair > > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::sorting::InPlaceParallelSort::MergeStepRecSerialRequest*, libmaus2::sorting::PairFileSorting::SecondComp, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>}; _Tp = libmaus2::sorting::InPlaceParallelSort::MergeStepRecSerialRequest*, libmaus2::sorting::PairFileSorting::SecondComp, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>; _Alloc = std::allocator*, libmaus2::sorting::PairFileSorting::SecondComp, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort> >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector*, libmaus2::sorting::PairFileSorting::SecondComp, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>, std::allocator*, libmaus2::sorting::PairFileSorting::SecondComp, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort> > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, libmaus2::sorting::PairFileSorting::SecondComp, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>*, std::vector*, libmaus2::sorting::PairFileSorting::SecondComp, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>, std::allocator*, libmaus2::sorting::PairFileSorting::SecondComp, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort> > > >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::sorting::InPlaceParallelSort::MergeStepRecSerialRequest*, libmaus2::sorting::PairFileSorting::FirstComp, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>}; _Tp = libmaus2::sorting::InPlaceParallelSort::MergeStepRecSerialRequest*, libmaus2::sorting::PairFileSorting::FirstComp, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>; _Alloc = std::allocator*, libmaus2::sorting::PairFileSorting::FirstComp, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort> >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector*, libmaus2::sorting::PairFileSorting::FirstComp, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>, std::allocator*, libmaus2::sorting::PairFileSorting::FirstComp, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort> > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, libmaus2::sorting::PairFileSorting::FirstComp, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>*, std::vector*, libmaus2::sorting::PairFileSorting::FirstComp, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>, std::allocator*, libmaus2::sorting::PairFileSorting::FirstComp, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort> > > >’} changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::sorting::PairFileSorting::Triple&}; _Tp = libmaus2::sorting::PairFileSorting::Triple; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector > >’} changed in GCC 7.1 In file included from /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/math/numbits.hpp:24, from ./libmaus2/huffman/IndexWriter.hpp:24, from ./libmaus2/huffman/RLEncoder.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = libmaus2::sorting::PairFileSorting::Triple; _Compare = __gnu_cxx::__ops::_Iter_comp_val >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/huffman/IndexWriter.hpp:22, from ./libmaus2/huffman/RLEncoder.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In member function ‘void std::priority_queue<_Tp, _Sequence, _Compare>::push(const value_type&) [with _Tp = libmaus2::sorting::PairFileSorting::Triple; _Sequence = std::vector >; _Compare = libmaus2::sorting::PairFileSorting::TripleSecondComparator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/math/numbits.hpp:24, from ./libmaus2/huffman/IndexWriter.hpp:24, from ./libmaus2/huffman/RLEncoder.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = libmaus2::sorting::PairFileSorting::Triple; _Compare = __gnu_cxx::__ops::_Iter_comp_val >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/huffman/IndexWriter.hpp:22, from ./libmaus2/huffman/RLEncoder.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In member function ‘void std::priority_queue<_Tp, _Sequence, _Compare>::push(const value_type&) [with _Tp = libmaus2::sorting::PairFileSorting::Triple; _Sequence = std::vector >; _Compare = libmaus2::sorting::PairFileSorting::TripleFirstComparator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/huffman/IndexWriter.hpp:22, from ./libmaus2/huffman/RLEncoder.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/huffman/IndexWriter.hpp:22, from ./libmaus2/huffman/RLEncoder.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In function ‘_ZN8libmaus210suffixsort6bwtb3m20BwtMergeSortTemplateINS0_14ByteInputTypesEE10computeBwtERKNS1_19BwtMergeSortOptionsEPSo._omp_fn.1’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In function ‘_ZN8libmaus210suffixsort6bwtb3m20BwtMergeSortTemplateINS0_17CompactInputTypesEE10computeBwtERKNS1_19BwtMergeSortOptionsEPSo._omp_fn.106’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In function ‘_ZN8libmaus210suffixsort6bwtb3m20BwtMergeSortTemplateINS0_13PacInputTypesEE10computeBwtERKNS1_19BwtMergeSortOptionsEPSo._omp_fn.127’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In function ‘_ZN8libmaus210suffixsort6bwtb3m20BwtMergeSortTemplateINS0_17PacTermInputTypesEE10computeBwtERKNS1_19BwtMergeSortOptionsEPSo._omp_fn.148’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In function ‘_ZN8libmaus210suffixsort6bwtb3m20BwtMergeSortTemplateINS0_13Lz4InputTypesEE10computeBwtERKNS1_19BwtMergeSortOptionsEPSo._omp_fn.169’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from ./libmaus2/math/numbits.hpp:24, from ./libmaus2/huffman/IndexWriter.hpp:24, from ./libmaus2/huffman/RLEncoder.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: ./libmaus2/autoarray/AutoArray.hpp: In constructor ‘libmaus2::autoarray::AutoArray::AutoArray(uint64_t, bool) [with N = libmaus2::suffixsort::GapMergePacket; libmaus2::autoarray::alloc_type atype = (libmaus2::autoarray::alloc_type)0; erase_type = libmaus2::autoarray::ArrayErase]’: ./libmaus2/autoarray/AutoArray.hpp:1801:5: warning: ‘’ may be used uninitialized in this function [-Wmaybe-uninitialized] array[i] = N(); ^~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/huffman/IndexWriter.hpp:22, from ./libmaus2/huffman/RLEncoder.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In member function ‘int64_t libmaus2::util::KMP::BestPrefix::operator[](uint64_t) [with stream_type = std::basic_istream]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In function ‘_ZN8libmaus210suffixsort6bwtb3m20BwtMergeSortTemplateINS0_14Utf8InputTypesEE10computeBwtERKNS1_19BwtMergeSortOptionsEPSo._omp_fn.190’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/huffman/IndexWriter.hpp:22, from ./libmaus2/huffman/RLEncoder.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘virtual void libmaus2::suffixsort::bwtb3m::MergeStrategyMergeBlock::fillGapRequestObjects(uint64_t)’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In static member function ‘static void libmaus2::sorting::InPlaceParallelSort::mergestepRecLevel(iterator, uint64_t, uint64_t, order_type, base_sort&, int, int, std::vector >&, uint64_t) [with iterator = std::pair*; order_type = libmaus2::sorting::PairFileSorting::SecondComp; base_sort = libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, libmaus2::sorting::PairFileSorting::SecondComp, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>*, std::vector*, libmaus2::sorting::PairFileSorting::SecondComp, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>, std::allocator*, libmaus2::sorting::PairFileSorting::SecondComp, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort> > > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In static member function ‘static void libmaus2::sorting::InPlaceParallelSort::mergestepRecLevel(iterator, uint64_t, uint64_t, order_type, base_sort&, int, int, std::vector >&, uint64_t) [with iterator = std::pair*; order_type = libmaus2::sorting::PairFileSorting::FirstComp; base_sort = libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, libmaus2::sorting::PairFileSorting::FirstComp, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>*, std::vector*, libmaus2::sorting::PairFileSorting::FirstComp, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>, std::allocator*, libmaus2::sorting::PairFileSorting::FirstComp, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort> > > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/math/numbits.hpp:24, from ./libmaus2/huffman/IndexWriter.hpp:24, from ./libmaus2/huffman/RLEncoder.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = libmaus2::sorting::PairFileSorting::Triple; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/huffman/IndexWriter.hpp:22, from ./libmaus2/huffman/RLEncoder.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In static member function ‘static uint64_t libmaus2::sorting::PairFileSorting::reduce(const string&, uint64_t, uint64_t, out_type&, std::ostream*) [with comparator_type = libmaus2::sorting::PairFileSorting::TripleSecondComparator; out_type = libmaus2::aio::SynchronousGenericOutput]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In static member function ‘static void libmaus2::sorting::PairFileSorting::mergeTriplesTemplate(uint64_t, const string&, uint64_t, out_type&, uint64_t, std::ostream*) [with comparator_type = libmaus2::sorting::PairFileSorting::TripleSecondComparator; out_type = libmaus2::aio::SynchronousGenericOutput; bool keepfirst = true; bool keepsecond = true]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In static member function ‘static void libmaus2::sorting::PairFileSorting::mergeTriplesTemplate(uint64_t, const string&, uint64_t, out_type&, uint64_t, std::ostream*) [with comparator_type = libmaus2::sorting::PairFileSorting::TripleSecondComparator; out_type = libmaus2::aio::SynchronousGenericOutput; bool keepfirst = false; bool keepsecond = false]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In static member function ‘static void libmaus2::sorting::PairFileSorting::mergeTriplesTemplate(uint64_t, const string&, uint64_t, out_type&, uint64_t, std::ostream*) [with comparator_type = libmaus2::sorting::PairFileSorting::TripleSecondComparator; out_type = libmaus2::aio::SynchronousGenericOutput; bool keepfirst = true; bool keepsecond = false]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In static member function ‘static void libmaus2::sorting::PairFileSorting::mergeTriplesTemplate(uint64_t, const string&, uint64_t, out_type&, uint64_t, std::ostream*) [with comparator_type = libmaus2::sorting::PairFileSorting::TripleSecondComparator; out_type = libmaus2::aio::SynchronousGenericOutput; bool keepfirst = false; bool keepsecond = true]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/math/numbits.hpp:24, from ./libmaus2/huffman/IndexWriter.hpp:24, from ./libmaus2/huffman/RLEncoder.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = libmaus2::sorting::PairFileSorting::Triple; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/huffman/IndexWriter.hpp:22, from ./libmaus2/huffman/RLEncoder.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In static member function ‘static uint64_t libmaus2::sorting::PairFileSorting::reduce(const string&, uint64_t, uint64_t, out_type&, std::ostream*) [with comparator_type = libmaus2::sorting::PairFileSorting::TripleFirstComparator; out_type = libmaus2::aio::SynchronousGenericOutput]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In static member function ‘static void libmaus2::sorting::PairFileSorting::mergeTriplesTemplate(uint64_t, const string&, uint64_t, out_type&, uint64_t, std::ostream*) [with comparator_type = libmaus2::sorting::PairFileSorting::TripleFirstComparator; out_type = libmaus2::aio::SynchronousGenericOutput; bool keepfirst = true; bool keepsecond = true]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In static member function ‘static void libmaus2::sorting::PairFileSorting::mergeTriplesTemplate(uint64_t, const string&, uint64_t, out_type&, uint64_t, std::ostream*) [with comparator_type = libmaus2::sorting::PairFileSorting::TripleFirstComparator; out_type = libmaus2::aio::SynchronousGenericOutput; bool keepfirst = false; bool keepsecond = false]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In static member function ‘static void libmaus2::sorting::PairFileSorting::mergeTriplesTemplate(uint64_t, const string&, uint64_t, out_type&, uint64_t, std::ostream*) [with comparator_type = libmaus2::sorting::PairFileSorting::TripleFirstComparator; out_type = libmaus2::aio::SynchronousGenericOutput; bool keepfirst = false; bool keepsecond = true]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In static member function ‘static void libmaus2::sorting::PairFileSorting::mergeTriplesTemplate(uint64_t, const string&, uint64_t, out_type&, uint64_t, std::ostream*) [with comparator_type = libmaus2::sorting::PairFileSorting::TripleFirstComparator; out_type = libmaus2::aio::SynchronousGenericOutput; bool keepfirst = true; bool keepsecond = false]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/math/numbits.hpp:24, from ./libmaus2/huffman/IndexWriter.hpp:24, from ./libmaus2/huffman/RLEncoder.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/math/numbits.hpp:24, from ./libmaus2/huffman/IndexWriter.hpp:24, from ./libmaus2/huffman/RLEncoder.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1963:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __sort(_RandomAccessIterator __first, _RandomAccessIterator __last, ^~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1963:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/map:60, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/math/numbits.hpp:24, from ./libmaus2/huffman/IndexWriter.hpp:24, from ./libmaus2/huffman/RLEncoder.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h: In member function ‘void std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_erase_aux(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator) [with _Key = long long unsigned int; _Val = std::pair::SparseGammaGapMergeInfo> >; _KeyOfValue = std::_Select1st::SparseGammaGapMergeInfo> > >; _Compare = std::less; _Alloc = std::allocator::SparseGammaGapMergeInfo> > >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:2489:5: note: parameter passing for argument of type ‘std::_Rb_tree::SparseGammaGapMergeInfo> >, std::_Select1st::SparseGammaGapMergeInfo> > >, std::less, std::allocator::SparseGammaGapMergeInfo> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator::SparseGammaGapMergeInfo> > >’} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/huffman/IndexWriter.hpp:22, from ./libmaus2/huffman/RLEncoder.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In function ‘_ZN8libmaus25gamma39SparseGammaGapMultiFileLevelSetTemplateIyE12mergeToDenseERNS_4util21TempFileNameGeneratorEyy._omp_fn.66’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/huffman/IndexWriter.hpp:22, from ./libmaus2/huffman/RLEncoder.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void libmaus2::huffman::RLEncoderBaseTemplate<_bit_writer_type>::implicitFlush() [with _bit_writer_type = libmaus2::huffman::HuffmanEncoderFileTemplate, libmaus2::bitio::FastWriteBitWriterTemplate >, 128, 255, false> >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/map:60, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/math/numbits.hpp:24, from ./libmaus2/huffman/IndexWriter.hpp:24, from ./libmaus2/huffman/RLEncoder.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h: In member function ‘std::pair std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:2149:5: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/huffman/IndexWriter.hpp:22, from ./libmaus2/huffman/RLEncoder.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::gamma::SparseGammaGapMultiFile&}; _Tp = libmaus2::gamma::SparseGammaGapMultiFile; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector >::iterator’ {aka ‘__gnu_cxx::__normal_iterator > >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/math/numbits.hpp:24, from ./libmaus2/huffman/IndexWriter.hpp:24, from ./libmaus2/huffman/RLEncoder.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::gamma::SparseGammaGapMultiFile; _Compare = __gnu_cxx::__ops::_Iter_comp_val >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/map:60, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/math/numbits.hpp:24, from ./libmaus2/huffman/IndexWriter.hpp:24, from ./libmaus2/huffman/RLEncoder.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair::SparseGammaGapMergeInfo> >; _KeyOfValue = std::_Select1st::SparseGammaGapMergeInfo> > >; _Compare = std::less; _Alloc = std::allocator::SparseGammaGapMergeInfo> > >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type ‘std::_Rb_tree::SparseGammaGapMergeInfo> >, std::_Select1st::SparseGammaGapMergeInfo> > >, std::less, std::allocator::SparseGammaGapMergeInfo> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator::SparseGammaGapMergeInfo> > >’} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/map:61, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/math/numbits.hpp:24, from ./libmaus2/huffman/IndexWriter.hpp:24, from ./libmaus2/huffman/RLEncoder.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr::SparseGammaGapMergeInfo>; _Compare = std::less; _Alloc = std::allocator::SparseGammaGapMergeInfo> > >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree::SparseGammaGapMergeInfo> >, std::_Select1st::SparseGammaGapMergeInfo> > >, std::less, std::allocator::SparseGammaGapMergeInfo> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator::SparseGammaGapMergeInfo> > >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabi/include/c++/8/map:60, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/math/numbits.hpp:24, from ./libmaus2/huffman/IndexWriter.hpp:24, from ./libmaus2/huffman/RLEncoder.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h: In member function ‘bool libmaus2::gamma::SparseGammaGapMultiFileLevelSetTemplate<_data_type>::checkMergePacket(uint64_t&, uint64_t&) [with _data_type = long long unsigned int]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type ‘std::_Rb_tree::SparseGammaGapMergeInfo> >, std::_Select1st::SparseGammaGapMergeInfo> > >, std::less, std::allocator::SparseGammaGapMergeInfo> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator::SparseGammaGapMergeInfo> > >’} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/map:61, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/math/numbits.hpp:24, from ./libmaus2/huffman/IndexWriter.hpp:24, from ./libmaus2/huffman/RLEncoder.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h: In function ‘_ZN8libmaus25gamma39SparseGammaGapMultiFileLevelSetTemplateIyE5mergeERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEy._omp_fn.67’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree::SparseGammaGapMergeInfo> >, std::_Select1st::SparseGammaGapMergeInfo> > >, std::less, std::allocator::SparseGammaGapMergeInfo> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator::SparseGammaGapMergeInfo> > >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabi/include/c++/8/map:60, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/math/numbits.hpp:24, from ./libmaus2/huffman/IndexWriter.hpp:24, from ./libmaus2/huffman/RLEncoder.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type ‘std::_Rb_tree::SparseGammaGapMergeInfo> >, std::_Select1st::SparseGammaGapMergeInfo> > >, std::less, std::allocator::SparseGammaGapMergeInfo> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator::SparseGammaGapMergeInfo> > >’} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/huffman/IndexWriter.hpp:22, from ./libmaus2/huffman/RLEncoder.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/map:60, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/math/numbits.hpp:24, from ./libmaus2/huffman/IndexWriter.hpp:24, from ./libmaus2/huffman/RLEncoder.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type ‘std::_Rb_tree::SparseGammaGapMergeInfo> >, std::_Select1st::SparseGammaGapMergeInfo> > >, std::less, std::allocator::SparseGammaGapMergeInfo> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator::SparseGammaGapMergeInfo> > >’} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type ‘std::_Rb_tree::SparseGammaGapMergeInfo> >, std::_Select1st::SparseGammaGapMergeInfo> > >, std::less, std::allocator::SparseGammaGapMergeInfo> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator::SparseGammaGapMergeInfo> > >’} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/math/numbits.hpp:24, from ./libmaus2/huffman/IndexWriter.hpp:24, from ./libmaus2/huffman/RLEncoder.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::gamma::SparseGammaGapMultiFile; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/huffman/IndexWriter.hpp:22, from ./libmaus2/huffman/RLEncoder.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In member function ‘std::vector > libmaus2::gamma::SparseGammaGapMultiFileLevelSetTemplate<_data_type>::merge(const string&, uint64_t) [with _data_type = long long unsigned int]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/math/numbits.hpp:24, from ./libmaus2/huffman/IndexWriter.hpp:24, from ./libmaus2/huffman/RLEncoder.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In static member function ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeBwt(const libmaus2::suffixsort::bwtb3m::BwtMergeSortOptions&, std::ostream*) [with input_types_type = libmaus2::suffixsort::ByteInputTypes]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:4834:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__sort(__first, __last, __gnu_cxx::__ops::__iter_less_iter()); ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In static member function ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeBwt(const libmaus2::suffixsort::bwtb3m::BwtMergeSortOptions&, std::ostream*) [with input_types_type = libmaus2::suffixsort::CompactInputTypes]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:4834:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__sort(__first, __last, __gnu_cxx::__ops::__iter_less_iter()); ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In static member function ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeBwt(const libmaus2::suffixsort::bwtb3m::BwtMergeSortOptions&, std::ostream*) [with input_types_type = libmaus2::suffixsort::PacInputTypes]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:4834:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__sort(__first, __last, __gnu_cxx::__ops::__iter_less_iter()); ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In static member function ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeBwt(const libmaus2::suffixsort::bwtb3m::BwtMergeSortOptions&, std::ostream*) [with input_types_type = libmaus2::suffixsort::PacTermInputTypes]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:4834:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__sort(__first, __last, __gnu_cxx::__ops::__iter_less_iter()); ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In static member function ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeBwt(const libmaus2::suffixsort::bwtb3m::BwtMergeSortOptions&, std::ostream*) [with input_types_type = libmaus2::suffixsort::Lz4InputTypes]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:4834:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__sort(__first, __last, __gnu_cxx::__ops::__iter_less_iter()); ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In static member function ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeBwt(const libmaus2::suffixsort::bwtb3m::BwtMergeSortOptions&, std::ostream*) [with input_types_type = libmaus2::suffixsort::Utf8InputTypes]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:4834:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__sort(__first, __last, __gnu_cxx::__ops::__iter_less_iter()); ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/map:60, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/math/numbits.hpp:24, from ./libmaus2/huffman/IndexWriter.hpp:24, from ./libmaus2/huffman/RLEncoder.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/map:61, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/math/numbits.hpp:24, from ./libmaus2/huffman/IndexWriter.hpp:24, from ./libmaus2/huffman/RLEncoder.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](std::map<_Key, _Tp, _Compare, _Alloc>::key_type&&) [with _Key = long long unsigned int; _Tp = std::deque; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:518:8: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabi/include/c++/8/map:60, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/math/numbits.hpp:24, from ./libmaus2/huffman/IndexWriter.hpp:24, from ./libmaus2/huffman/RLEncoder.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/map:61, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/math/numbits.hpp:24, from ./libmaus2/huffman/IndexWriter.hpp:24, from ./libmaus2/huffman/RLEncoder.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::deque; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabi/include/c++/8/map:60, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/math/numbits.hpp:24, from ./libmaus2/huffman/IndexWriter.hpp:24, from ./libmaus2/huffman/RLEncoder.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h: In member function ‘void libmaus2::gamma::SparseGammaGapMultiFileLevelSetTemplate<_data_type>::checkMergeSingle(bool) [with _data_type = long long unsigned int]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type ‘std::_Rb_tree::SparseGammaGapMergeInfo> >, std::_Select1st::SparseGammaGapMergeInfo> > >, std::less, std::allocator::SparseGammaGapMergeInfo> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator::SparseGammaGapMergeInfo> > >’} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type ‘std::_Rb_tree::SparseGammaGapMergeInfo> >, std::_Select1st::SparseGammaGapMergeInfo> > >, std::less, std::allocator::SparseGammaGapMergeInfo> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator::SparseGammaGapMergeInfo> > >’} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/map:61, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/math/numbits.hpp:24, from ./libmaus2/huffman/IndexWriter.hpp:24, from ./libmaus2/huffman/RLEncoder.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h: In function ‘_ZN8libmaus210suffixsort6bwtb3m20BwtMergeSortTemplateINS0_13Lz4InputTypesEE21computeSparseGapArrayERNS_4util21TempFileNameGeneratorERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEyyyyyRKNS0_23BwtMergeBlockSortResultERKSt6vectorISD_SaISD_EEPNS_2lf6DArrayESF_yRKSJ_INS0_14BwtMergeZBlockESaISR_EEyPSo._omp_fn.187’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree::SparseGammaGapMergeInfo> >, std::_Select1st::SparseGammaGapMergeInfo> > >, std::less, std::allocator::SparseGammaGapMergeInfo> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator::SparseGammaGapMergeInfo> > >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabi/include/c++/8/map:60, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/math/numbits.hpp:24, from ./libmaus2/huffman/IndexWriter.hpp:24, from ./libmaus2/huffman/RLEncoder.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type ‘std::_Rb_tree::SparseGammaGapMergeInfo> >, std::_Select1st::SparseGammaGapMergeInfo> > >, std::less, std::allocator::SparseGammaGapMergeInfo> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator::SparseGammaGapMergeInfo> > >’} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/map:61, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/math/numbits.hpp:24, from ./libmaus2/huffman/IndexWriter.hpp:24, from ./libmaus2/huffman/RLEncoder.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabi/include/c++/8/map:60, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/math/numbits.hpp:24, from ./libmaus2/huffman/IndexWriter.hpp:24, from ./libmaus2/huffman/RLEncoder.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type ‘std::_Rb_tree::SparseGammaGapMergeInfo> >, std::_Select1st::SparseGammaGapMergeInfo> > >, std::less, std::allocator::SparseGammaGapMergeInfo> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator::SparseGammaGapMergeInfo> > >’} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type ‘std::_Rb_tree::SparseGammaGapMergeInfo> >, std::_Select1st::SparseGammaGapMergeInfo> > >, std::less, std::allocator::SparseGammaGapMergeInfo> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator::SparseGammaGapMergeInfo> > >’} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/map:61, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/math/numbits.hpp:24, from ./libmaus2/huffman/IndexWriter.hpp:24, from ./libmaus2/huffman/RLEncoder.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h: In function ‘_ZN8libmaus210suffixsort6bwtb3m20BwtMergeSortTemplateINS0_13PacInputTypesEE21computeSparseGapArrayERNS_4util21TempFileNameGeneratorERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEyyyyyRKNS0_23BwtMergeBlockSortResultERKSt6vectorISD_SaISD_EEPNS_2lf6DArrayESF_yRKSJ_INS0_14BwtMergeZBlockESaISR_EEyPSo._omp_fn.145’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree::SparseGammaGapMergeInfo> >, std::_Select1st::SparseGammaGapMergeInfo> > >, std::less, std::allocator::SparseGammaGapMergeInfo> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator::SparseGammaGapMergeInfo> > >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabi/include/c++/8/map:60, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/math/numbits.hpp:24, from ./libmaus2/huffman/IndexWriter.hpp:24, from ./libmaus2/huffman/RLEncoder.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type ‘std::_Rb_tree::SparseGammaGapMergeInfo> >, std::_Select1st::SparseGammaGapMergeInfo> > >, std::less, std::allocator::SparseGammaGapMergeInfo> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator::SparseGammaGapMergeInfo> > >’} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/map:61, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/math/numbits.hpp:24, from ./libmaus2/huffman/IndexWriter.hpp:24, from ./libmaus2/huffman/RLEncoder.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabi/include/c++/8/map:60, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/math/numbits.hpp:24, from ./libmaus2/huffman/IndexWriter.hpp:24, from ./libmaus2/huffman/RLEncoder.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type ‘std::_Rb_tree::SparseGammaGapMergeInfo> >, std::_Select1st::SparseGammaGapMergeInfo> > >, std::less, std::allocator::SparseGammaGapMergeInfo> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator::SparseGammaGapMergeInfo> > >’} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type ‘std::_Rb_tree::SparseGammaGapMergeInfo> >, std::_Select1st::SparseGammaGapMergeInfo> > >, std::less, std::allocator::SparseGammaGapMergeInfo> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator::SparseGammaGapMergeInfo> > >’} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/map:61, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/math/numbits.hpp:24, from ./libmaus2/huffman/IndexWriter.hpp:24, from ./libmaus2/huffman/RLEncoder.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h: In function ‘_ZN8libmaus210suffixsort6bwtb3m20BwtMergeSortTemplateINS0_14Utf8InputTypesEE21computeSparseGapArrayERNS_4util21TempFileNameGeneratorERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEyyyyyRKNS0_23BwtMergeBlockSortResultERKSt6vectorISD_SaISD_EEPNS_2lf6DArrayESF_yRKSJ_INS0_14BwtMergeZBlockESaISR_EEyPSo._omp_fn.208’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree::SparseGammaGapMergeInfo> >, std::_Select1st::SparseGammaGapMergeInfo> > >, std::less, std::allocator::SparseGammaGapMergeInfo> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator::SparseGammaGapMergeInfo> > >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabi/include/c++/8/map:60, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/math/numbits.hpp:24, from ./libmaus2/huffman/IndexWriter.hpp:24, from ./libmaus2/huffman/RLEncoder.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type ‘std::_Rb_tree::SparseGammaGapMergeInfo> >, std::_Select1st::SparseGammaGapMergeInfo> > >, std::less, std::allocator::SparseGammaGapMergeInfo> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator::SparseGammaGapMergeInfo> > >’} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/map:61, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/math/numbits.hpp:24, from ./libmaus2/huffman/IndexWriter.hpp:24, from ./libmaus2/huffman/RLEncoder.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabi/include/c++/8/map:60, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/math/numbits.hpp:24, from ./libmaus2/huffman/IndexWriter.hpp:24, from ./libmaus2/huffman/RLEncoder.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type ‘std::_Rb_tree::SparseGammaGapMergeInfo> >, std::_Select1st::SparseGammaGapMergeInfo> > >, std::less, std::allocator::SparseGammaGapMergeInfo> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator::SparseGammaGapMergeInfo> > >’} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type ‘std::_Rb_tree::SparseGammaGapMergeInfo> >, std::_Select1st::SparseGammaGapMergeInfo> > >, std::less, std::allocator::SparseGammaGapMergeInfo> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator::SparseGammaGapMergeInfo> > >’} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/map:61, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/math/numbits.hpp:24, from ./libmaus2/huffman/IndexWriter.hpp:24, from ./libmaus2/huffman/RLEncoder.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h: In function ‘_ZN8libmaus210suffixsort6bwtb3m20BwtMergeSortTemplateINS0_17PacTermInputTypesEE21computeSparseGapArrayERNS_4util21TempFileNameGeneratorERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEyyyyyRKNS0_23BwtMergeBlockSortResultERKSt6vectorISD_SaISD_EEPNS_2lf6DArrayESF_yRKSJ_INS0_14BwtMergeZBlockESaISR_EEyPSo._omp_fn.166’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree::SparseGammaGapMergeInfo> >, std::_Select1st::SparseGammaGapMergeInfo> > >, std::less, std::allocator::SparseGammaGapMergeInfo> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator::SparseGammaGapMergeInfo> > >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabi/include/c++/8/map:60, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/math/numbits.hpp:24, from ./libmaus2/huffman/IndexWriter.hpp:24, from ./libmaus2/huffman/RLEncoder.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type ‘std::_Rb_tree::SparseGammaGapMergeInfo> >, std::_Select1st::SparseGammaGapMergeInfo> > >, std::less, std::allocator::SparseGammaGapMergeInfo> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator::SparseGammaGapMergeInfo> > >’} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/map:61, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/math/numbits.hpp:24, from ./libmaus2/huffman/IndexWriter.hpp:24, from ./libmaus2/huffman/RLEncoder.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabi/include/c++/8/map:60, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/math/numbits.hpp:24, from ./libmaus2/huffman/IndexWriter.hpp:24, from ./libmaus2/huffman/RLEncoder.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type ‘std::_Rb_tree::SparseGammaGapMergeInfo> >, std::_Select1st::SparseGammaGapMergeInfo> > >, std::less, std::allocator::SparseGammaGapMergeInfo> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator::SparseGammaGapMergeInfo> > >’} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type ‘std::_Rb_tree::SparseGammaGapMergeInfo> >, std::_Select1st::SparseGammaGapMergeInfo> > >, std::less, std::allocator::SparseGammaGapMergeInfo> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator::SparseGammaGapMergeInfo> > >’} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/map:61, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/math/numbits.hpp:24, from ./libmaus2/huffman/IndexWriter.hpp:24, from ./libmaus2/huffman/RLEncoder.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h: In function ‘_ZN8libmaus210suffixsort6bwtb3m20BwtMergeSortTemplateINS0_17CompactInputTypesEE21computeSparseGapArrayERNS_4util21TempFileNameGeneratorERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEyyyyyRKNS0_23BwtMergeBlockSortResultERKSt6vectorISD_SaISD_EEPNS_2lf6DArrayESF_yRKSJ_INS0_14BwtMergeZBlockESaISR_EEyPSo._omp_fn.124’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree::SparseGammaGapMergeInfo> >, std::_Select1st::SparseGammaGapMergeInfo> > >, std::less, std::allocator::SparseGammaGapMergeInfo> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator::SparseGammaGapMergeInfo> > >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabi/include/c++/8/map:60, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/math/numbits.hpp:24, from ./libmaus2/huffman/IndexWriter.hpp:24, from ./libmaus2/huffman/RLEncoder.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type ‘std::_Rb_tree::SparseGammaGapMergeInfo> >, std::_Select1st::SparseGammaGapMergeInfo> > >, std::less, std::allocator::SparseGammaGapMergeInfo> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator::SparseGammaGapMergeInfo> > >’} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/map:61, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/math/numbits.hpp:24, from ./libmaus2/huffman/IndexWriter.hpp:24, from ./libmaus2/huffman/RLEncoder.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabi/include/c++/8/map:60, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/math/numbits.hpp:24, from ./libmaus2/huffman/IndexWriter.hpp:24, from ./libmaus2/huffman/RLEncoder.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type ‘std::_Rb_tree::SparseGammaGapMergeInfo> >, std::_Select1st::SparseGammaGapMergeInfo> > >, std::less, std::allocator::SparseGammaGapMergeInfo> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator::SparseGammaGapMergeInfo> > >’} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type ‘std::_Rb_tree::SparseGammaGapMergeInfo> >, std::_Select1st::SparseGammaGapMergeInfo> > >, std::less, std::allocator::SparseGammaGapMergeInfo> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator::SparseGammaGapMergeInfo> > >’} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/map:61, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/math/numbits.hpp:24, from ./libmaus2/huffman/IndexWriter.hpp:24, from ./libmaus2/huffman/RLEncoder.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h: In function ‘_ZN8libmaus210suffixsort6bwtb3m20BwtMergeSortTemplateINS0_14ByteInputTypesEE21computeSparseGapArrayERNS_4util21TempFileNameGeneratorERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEyyyyyRKNS0_23BwtMergeBlockSortResultERKSt6vectorISD_SaISD_EEPNS_2lf6DArrayESF_yRKSJ_INS0_14BwtMergeZBlockESaISR_EEyPSo._omp_fn.65’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree::SparseGammaGapMergeInfo> >, std::_Select1st::SparseGammaGapMergeInfo> > >, std::less, std::allocator::SparseGammaGapMergeInfo> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator::SparseGammaGapMergeInfo> > >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabi/include/c++/8/map:60, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/math/numbits.hpp:24, from ./libmaus2/huffman/IndexWriter.hpp:24, from ./libmaus2/huffman/RLEncoder.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type ‘std::_Rb_tree::SparseGammaGapMergeInfo> >, std::_Select1st::SparseGammaGapMergeInfo> > >, std::less, std::allocator::SparseGammaGapMergeInfo> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator::SparseGammaGapMergeInfo> > >’} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/map:61, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/math/numbits.hpp:24, from ./libmaus2/huffman/IndexWriter.hpp:24, from ./libmaus2/huffman/RLEncoder.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabi/include/c++/8/map:60, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/math/numbits.hpp:24, from ./libmaus2/huffman/IndexWriter.hpp:24, from ./libmaus2/huffman/RLEncoder.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type ‘std::_Rb_tree::SparseGammaGapMergeInfo> >, std::_Select1st::SparseGammaGapMergeInfo> > >, std::less, std::allocator::SparseGammaGapMergeInfo> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator::SparseGammaGapMergeInfo> > >’} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type ‘std::_Rb_tree::SparseGammaGapMergeInfo> >, std::_Select1st::SparseGammaGapMergeInfo> > >, std::less, std::allocator::SparseGammaGapMergeInfo> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator::SparseGammaGapMergeInfo> > >’} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ libtool: compile: arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp -o libmaus2/suffixsort/bwtb3m/la-BwtMergeSort.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/suffixsort/bwtb3m/la-BwtComputeSSA.lo `test -f 'libmaus2/suffixsort/bwtb3m/BwtComputeSSA.cpp' || echo './'`libmaus2/suffixsort/bwtb3m/BwtComputeSSA.cpp libtool: compile: arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtComputeSSA.cpp -fPIC -DPIC -o libmaus2/suffixsort/bwtb3m/.libs/la-BwtComputeSSA.o In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/aio/PosixFdInput.hpp:40, from ./libmaus2/aio/PosixFdInputWrapper.hpp:22, from ./libmaus2/aio/PosixFdInputStream.hpp:22, from ./libmaus2/aio/PosixFdInputStreamFactory.hpp:23, from ./libmaus2/aio/InputStreamFactoryContainer.hpp:23, from ./libmaus2/suffixsort/bwtb3m/BwtComputeSSA.hpp:21, from libmaus2/suffixsort/bwtb3m/BwtComputeSSA.cpp:18: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/aio/PosixFdInput.hpp:40, from ./libmaus2/aio/PosixFdInputWrapper.hpp:22, from ./libmaus2/aio/PosixFdInputStream.hpp:22, from ./libmaus2/aio/PosixFdInputStreamFactory.hpp:23, from ./libmaus2/aio/InputStreamFactoryContainer.hpp:23, from ./libmaus2/suffixsort/bwtb3m/BwtComputeSSA.hpp:21, from libmaus2/suffixsort/bwtb3m/BwtComputeSSA.cpp:18: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In function ‘uint64_t computeNF(const std::vector&, const std::vector&, uint64_t, std::vector*)’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/lz/StreamWrapperBuffer.hpp:23, from ./libmaus2/lz/StreamWrapper.hpp:22, from ./libmaus2/aio/PosixFdInput.hpp:41, from ./libmaus2/aio/PosixFdInputWrapper.hpp:22, from ./libmaus2/aio/PosixFdInputStream.hpp:22, from ./libmaus2/aio/PosixFdInputStreamFactory.hpp:23, from ./libmaus2/aio/InputStreamFactoryContainer.hpp:23, from ./libmaus2/suffixsort/bwtb3m/BwtComputeSSA.hpp:21, from libmaus2/suffixsort/bwtb3m/BwtComputeSSA.cpp:18: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = QueueElement; _Compare = __gnu_cxx::__ops::_Iter_comp_val >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_val >::HeapOrderAdapter>]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/aio/PosixFdInput.hpp:40, from ./libmaus2/aio/PosixFdInputWrapper.hpp:22, from ./libmaus2/aio/PosixFdInputStream.hpp:22, from ./libmaus2/aio/PosixFdInputStreamFactory.hpp:23, from ./libmaus2/aio/InputStreamFactoryContainer.hpp:23, from ./libmaus2/suffixsort/bwtb3m/BwtComputeSSA.hpp:21, from libmaus2/suffixsort/bwtb3m/BwtComputeSSA.cpp:18: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {QueueElement}; _Tp = QueueElement; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector >::iterator’ {aka ‘__gnu_cxx::__normal_iterator > >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {QueueElement}; _Tp = QueueElement; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/lz/StreamWrapperBuffer.hpp:23, from ./libmaus2/lz/StreamWrapper.hpp:22, from ./libmaus2/aio/PosixFdInput.hpp:41, from ./libmaus2/aio/PosixFdInputWrapper.hpp:22, from ./libmaus2/aio/PosixFdInputStream.hpp:22, from ./libmaus2/aio/PosixFdInputStreamFactory.hpp:23, from ./libmaus2/aio/InputStreamFactoryContainer.hpp:23, from ./libmaus2/suffixsort/bwtb3m/BwtComputeSSA.hpp:21, from libmaus2/suffixsort/bwtb3m/BwtComputeSSA.cpp:18: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = QueueElement; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from ./libmaus2/lz/StreamWrapperBuffer.hpp:23, from ./libmaus2/lz/StreamWrapper.hpp:22, from ./libmaus2/aio/PosixFdInput.hpp:41, from ./libmaus2/aio/PosixFdInputWrapper.hpp:22, from ./libmaus2/aio/PosixFdInputStream.hpp:22, from ./libmaus2/aio/PosixFdInputStreamFactory.hpp:23, from ./libmaus2/aio/InputStreamFactoryContainer.hpp:23, from ./libmaus2/suffixsort/bwtb3m/BwtComputeSSA.hpp:21, from libmaus2/suffixsort/bwtb3m/BwtComputeSSA.cpp:18: ./libmaus2/autoarray/AutoArray.hpp: In constructor ‘libmaus2::autoarray::AutoArray::AutoArray(uint64_t, bool) [with N = IsaTriple; libmaus2::autoarray::alloc_type atype = (libmaus2::autoarray::alloc_type)0; erase_type = libmaus2::autoarray::ArrayErase]’: ./libmaus2/autoarray/AutoArray.hpp:1801:5: warning: ‘’ may be used uninitialized in this function [-Wmaybe-uninitialized] array[i] = N(); ^~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/lz/StreamWrapperBuffer.hpp:23, from ./libmaus2/lz/StreamWrapper.hpp:22, from ./libmaus2/aio/PosixFdInput.hpp:41, from ./libmaus2/aio/PosixFdInputWrapper.hpp:22, from ./libmaus2/aio/PosixFdInputStream.hpp:22, from ./libmaus2/aio/PosixFdInputStreamFactory.hpp:23, from ./libmaus2/aio/InputStreamFactoryContainer.hpp:23, from ./libmaus2/suffixsort/bwtb3m/BwtComputeSSA.hpp:21, from libmaus2/suffixsort/bwtb3m/BwtComputeSSA.cpp:18: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >::HeapOrderAdapter>]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/aio/PosixFdInput.hpp:40, from ./libmaus2/aio/PosixFdInputWrapper.hpp:22, from ./libmaus2/aio/PosixFdInputStream.hpp:22, from ./libmaus2/aio/PosixFdInputStreamFactory.hpp:23, from ./libmaus2/aio/InputStreamFactoryContainer.hpp:23, from ./libmaus2/suffixsort/bwtb3m/BwtComputeSSA.hpp:21, from libmaus2/suffixsort/bwtb3m/BwtComputeSSA.cpp:18: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘bool libmaus2::sorting::MergingReadBack<_data_type, _order_type>::getNext(libmaus2::sorting::MergingReadBack<_data_type, _order_type>::data_type&) [with _data_type = IsaTriple; _order_type = std::less]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In constructor ‘libmaus2::sorting::MergingReadBack<_data_type, _order_type>::MergingReadBack(const string&, const std::vector&, uint64_t, uint64_t) [with _data_type = IsaTriple; _order_type = std::less]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In static member function ‘static std::vector libmaus2::sorting::MergingReadBack<_data_type, _order_type>::mergeStep(const string&, const std::vector&, uint64_t, uint64_t) [with _data_type = IsaTriple; _order_type = std::less]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::sorting::InPlaceParallelSort::MergeStepRecSerialRequest*, std::less >, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>}; _Tp = libmaus2::sorting::InPlaceParallelSort::MergeStepRecSerialRequest*, std::less >, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>; _Alloc = std::allocator*, std::less >, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort> >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector*, std::less >, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>, std::allocator*, std::less >, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort> > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::less >, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>*, std::vector*, std::less >, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>, std::allocator*, std::less >, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort> > > >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector*, std::less >, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>, std::allocator*, std::less >, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort> > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::less >, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>*, std::vector*, std::less >, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>, std::allocator*, std::less >, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort> > > >’} changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In static member function ‘static void libmaus2::sorting::InPlaceParallelSort::mergestepRecLevel(iterator, uint64_t, uint64_t, order_type, base_sort&, int, int, std::vector >&, uint64_t) [with iterator = std::pair*; order_type = std::less >; base_sort = libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::less >, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>*, std::vector*, std::less >, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>, std::allocator*, std::less >, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort> > > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ libtool: compile: arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtComputeSSA.cpp -o libmaus2/suffixsort/bwtb3m/la-BwtComputeSSA.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/fastx/la-FastAToCompact4BigBand.lo `test -f 'libmaus2/fastx/FastAToCompact4BigBand.cpp' || echo './'`libmaus2/fastx/FastAToCompact4BigBand.cpp libtool: compile: arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/fastx/FastAToCompact4BigBand.cpp -fPIC -DPIC -o libmaus2/fastx/.libs/la-FastAToCompact4BigBand.o In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/fastx/FastAToCompact4BigBand.hpp:21, from libmaus2/fastx/FastAToCompact4BigBand.cpp:18: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector > >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In static member function ‘static int libmaus2::fastx::FastAToCompact4BigBand::fastaToCompact4BigBand(const std::vector >&, bool, bool, std::ostream*, std::__cxx11::string)’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ libtool: compile: arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/fastx/FastAToCompact4BigBand.cpp -o libmaus2/fastx/la-FastAToCompact4BigBand.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/suffixsort/bwtb3m/la-BwtMergeSortResult.lo `test -f 'libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.cpp' || echo './'`libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.cpp libtool: compile: arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.cpp -fPIC -DPIC -o libmaus2/suffixsort/bwtb3m/.libs/la-BwtMergeSortResult.o In file included from /usr/arm-linux-gnueabi/include/c++/8/cassert:44, from ./libmaus2/suffixsort/divsufsort.hpp:32, from ./libmaus2/util/Utf8String.hpp:27, from ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:25, from ./libmaus2/wavelet/RlToHwtBase.hpp:30, from libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.cpp:19: ./libmaus2/wavelet/RlToHwtBase.hpp: In instantiation of ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtSmallAlphabet(const string&, const libmaus2::huffman::HuffmanTree&, uint64_t) [with entity_type = unsigned char; bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::__cxx11::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1398:105: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwt(const string&, const string&, std::__cxx11::string, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::__cxx11::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’ libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.cpp:136:53: required from here ./libmaus2/wavelet/RlToHwtBase.hpp:809:46: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] assert ( symtonodesp-symtonodes.begin() == symtonodevecoffsets[sym] ); ./libmaus2/wavelet/RlToHwtBase.hpp: In instantiation of ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtSmallAlphabet(const string&, const libmaus2::huffman::HuffmanTree&, uint64_t) [with entity_type = short unsigned int; bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::__cxx11::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1407:106: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwt(const string&, const string&, std::__cxx11::string, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::__cxx11::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’ libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.cpp:136:53: required from here ./libmaus2/wavelet/RlToHwtBase.hpp:809:46: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] ./libmaus2/wavelet/RlToHwtBase.hpp: In instantiation of ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtSmallAlphabet(const string&, const libmaus2::huffman::HuffmanTree&, uint64_t) [with entity_type = unsigned int; bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::__cxx11::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1416:106: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwt(const string&, const string&, std::__cxx11::string, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::__cxx11::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’ libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.cpp:136:53: required from here ./libmaus2/wavelet/RlToHwtBase.hpp:809:46: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] ./libmaus2/wavelet/RlToHwtBase.hpp: In instantiation of ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtSmallAlphabet(const string&, const libmaus2::huffman::HuffmanTree&, uint64_t) [with entity_type = long long unsigned int; bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::__cxx11::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1425:106: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwt(const string&, const string&, std::__cxx11::string, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::__cxx11::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’ libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.cpp:136:53: required from here ./libmaus2/wavelet/RlToHwtBase.hpp:809:46: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] ./libmaus2/wavelet/RlToHwtBase.hpp: In instantiation of ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtSmallAlphabet(const string&, const libmaus2::huffman::HuffmanTree&, uint64_t) [with entity_type = unsigned char; bool _utf8_input_type = false; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::__cxx11::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1398:105: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwt(const string&, const string&, std::__cxx11::string, uint64_t) [with bool _utf8_input_type = false; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::__cxx11::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’ libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.cpp:143:54: required from here ./libmaus2/wavelet/RlToHwtBase.hpp:809:46: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] ./libmaus2/wavelet/RlToHwtBase.hpp: In instantiation of ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtSmallAlphabet(const string&, const libmaus2::huffman::HuffmanTree&, uint64_t) [with entity_type = short unsigned int; bool _utf8_input_type = false; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::__cxx11::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1407:106: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwt(const string&, const string&, std::__cxx11::string, uint64_t) [with bool _utf8_input_type = false; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::__cxx11::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’ libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.cpp:143:54: required from here ./libmaus2/wavelet/RlToHwtBase.hpp:809:46: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] ./libmaus2/wavelet/RlToHwtBase.hpp: In instantiation of ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtSmallAlphabet(const string&, const libmaus2::huffman::HuffmanTree&, uint64_t) [with entity_type = unsigned int; bool _utf8_input_type = false; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::__cxx11::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1416:106: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwt(const string&, const string&, std::__cxx11::string, uint64_t) [with bool _utf8_input_type = false; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::__cxx11::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’ libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.cpp:143:54: required from here ./libmaus2/wavelet/RlToHwtBase.hpp:809:46: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] ./libmaus2/wavelet/RlToHwtBase.hpp: In instantiation of ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtSmallAlphabet(const string&, const libmaus2::huffman::HuffmanTree&, uint64_t) [with entity_type = long long unsigned int; bool _utf8_input_type = false; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::__cxx11::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1425:106: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwt(const string&, const string&, std::__cxx11::string, uint64_t) [with bool _utf8_input_type = false; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::__cxx11::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’ libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.cpp:143:54: required from here ./libmaus2/wavelet/RlToHwtBase.hpp:809:46: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/parallel/PosixSpinLock.hpp:23, from ./libmaus2/aio/StreamLock.hpp:21, from ./libmaus2/autoarray/GenericAlignedAllocation.hpp:23, from ./libmaus2/autoarray/AutoArray.hpp:26, from ./libmaus2/rank/ChooseCache.hpp:23, from ./libmaus2/rank/CodeBase.hpp:23, from ./libmaus2/rank/EncodeCache.hpp:23, from ./libmaus2/rank/ERankBase.hpp:24, from ./libmaus2/rank/ImpCacheLineRank.hpp:24, from ./libmaus2/wavelet/ImpCompactHuffmanWaveletTree.hpp:23, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.hpp:24, from libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.cpp:18: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long int&}; _Tp = long long int; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/parallel/PosixSpinLock.hpp:23, from ./libmaus2/aio/StreamLock.hpp:21, from ./libmaus2/autoarray/GenericAlignedAllocation.hpp:23, from ./libmaus2/autoarray/AutoArray.hpp:26, from ./libmaus2/rank/ChooseCache.hpp:23, from ./libmaus2/rank/CodeBase.hpp:23, from ./libmaus2/rank/EncodeCache.hpp:23, from ./libmaus2/rank/ERankBase.hpp:24, from ./libmaus2/rank/ImpCacheLineRank.hpp:24, from ./libmaus2/wavelet/ImpCompactHuffmanWaveletTree.hpp:23, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.hpp:24, from libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.cpp:18: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In member function ‘virtual void libmaus2::huffman::HuffmanTreeLeaf::symbolVector(std::vector&) const’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/parallel/PosixSpinLock.hpp:23, from ./libmaus2/aio/StreamLock.hpp:21, from ./libmaus2/autoarray/GenericAlignedAllocation.hpp:23, from ./libmaus2/autoarray/AutoArray.hpp:26, from ./libmaus2/rank/ChooseCache.hpp:23, from ./libmaus2/rank/CodeBase.hpp:23, from ./libmaus2/rank/EncodeCache.hpp:23, from ./libmaus2/rank/ERankBase.hpp:24, from ./libmaus2/rank/ImpCacheLineRank.hpp:24, from ./libmaus2/wavelet/ImpCompactHuffmanWaveletTree.hpp:23, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.hpp:24, from libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.cpp:18: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/parallel/PosixSpinLock.hpp:23, from ./libmaus2/aio/StreamLock.hpp:21, from ./libmaus2/autoarray/GenericAlignedAllocation.hpp:23, from ./libmaus2/autoarray/AutoArray.hpp:26, from ./libmaus2/rank/ChooseCache.hpp:23, from ./libmaus2/rank/CodeBase.hpp:23, from ./libmaus2/rank/EncodeCache.hpp:23, from ./libmaus2/rank/ERankBase.hpp:24, from ./libmaus2/rank/ImpCacheLineRank.hpp:24, from ./libmaus2/wavelet/ImpCompactHuffmanWaveletTree.hpp:23, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.hpp:24, from libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.cpp:18: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In member function ‘virtual void libmaus2::huffman::HuffmanTreeLeaf::depthVector(std::vector&, uint64_t) const’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/parallel/PosixSpinLock.hpp:23, from ./libmaus2/aio/StreamLock.hpp:21, from ./libmaus2/autoarray/GenericAlignedAllocation.hpp:23, from ./libmaus2/autoarray/AutoArray.hpp:26, from ./libmaus2/rank/ChooseCache.hpp:23, from ./libmaus2/rank/CodeBase.hpp:23, from ./libmaus2/rank/EncodeCache.hpp:23, from ./libmaus2/rank/ERankBase.hpp:24, from ./libmaus2/rank/ImpCacheLineRank.hpp:24, from ./libmaus2/wavelet/ImpCompactHuffmanWaveletTree.hpp:23, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.hpp:24, from libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.cpp:18: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector > >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘virtual void libmaus2::huffman::HuffmanTreeLeaf::symbolDepthVector(std::vector >&, uint64_t) const’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector > >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from ./libmaus2/rank/ChooseCache.hpp:23, from ./libmaus2/rank/CodeBase.hpp:23, from ./libmaus2/rank/EncodeCache.hpp:23, from ./libmaus2/rank/ERankBase.hpp:24, from ./libmaus2/rank/ImpCacheLineRank.hpp:24, from ./libmaus2/wavelet/ImpCompactHuffmanWaveletTree.hpp:23, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.hpp:24, from libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.cpp:18: ./libmaus2/autoarray/AutoArray.hpp: In constructor ‘libmaus2::autoarray::AutoArray::AutoArray(uint64_t, bool) [with N = libmaus2::huffman::IndexEntry; libmaus2::autoarray::alloc_type atype = (libmaus2::autoarray::alloc_type)0; erase_type = libmaus2::autoarray::ArrayErase]’: ./libmaus2/autoarray/AutoArray.hpp:1801:5: warning: ‘’ may be used uninitialized in this function [-Wmaybe-uninitialized] array[i] = N(); ^~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/parallel/PosixSpinLock.hpp:23, from ./libmaus2/aio/StreamLock.hpp:21, from ./libmaus2/autoarray/GenericAlignedAllocation.hpp:23, from ./libmaus2/autoarray/AutoArray.hpp:26, from ./libmaus2/rank/ChooseCache.hpp:23, from ./libmaus2/rank/CodeBase.hpp:23, from ./libmaus2/rank/EncodeCache.hpp:23, from ./libmaus2/rank/ERankBase.hpp:24, from ./libmaus2/rank/ImpCacheLineRank.hpp:24, from ./libmaus2/wavelet/ImpCompactHuffmanWaveletTree.hpp:23, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.hpp:24, from libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.cpp:18: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In member function ‘uint64_t libmaus2::wavelet::ImpExternalWaveletGeneratorHuffman::createFinalStream(stream_type&) [with stream_type = std::__cxx11::basic_ostringstream]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In member function ‘uint64_t libmaus2::wavelet::ImpExternalWaveletGeneratorCompactHuffmanParallel::createFinalStream(stream_type&, uint64_t) [with stream_type = std::basic_ostream]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/map:60, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/rank/ChooseCache.hpp:23, from ./libmaus2/rank/CodeBase.hpp:23, from ./libmaus2/rank/EncodeCache.hpp:23, from ./libmaus2/rank/ERankBase.hpp:24, from ./libmaus2/rank/ImpCacheLineRank.hpp:24, from ./libmaus2/wavelet/ImpCompactHuffmanWaveletTree.hpp:23, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.hpp:24, from libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.cpp:18: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = const libmaus2::huffman::HuffmanTreeLeaf*; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = const libmaus2::huffman::HuffmanTreeInnerNode*; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 In file included from /usr/arm-linux-gnueabi/include/c++/8/map:61, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/rank/ChooseCache.hpp:23, from ./libmaus2/rank/CodeBase.hpp:23, from ./libmaus2/rank/EncodeCache.hpp:23, from ./libmaus2/rank/ERankBase.hpp:24, from ./libmaus2/rank/ImpCacheLineRank.hpp:24, from ./libmaus2/wavelet/ImpCompactHuffmanWaveletTree.hpp:23, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.hpp:24, from libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.cpp:18: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = const libmaus2::huffman::HuffmanTreeInnerNode*; _Tp = long long unsigned int; _Compare = std::less; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h: In member function ‘virtual void libmaus2::huffman::HuffmanTreeInnerNode::toDot(std::ostream&) const’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabi/include/c++/8/map:60, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/rank/ChooseCache.hpp:23, from ./libmaus2/rank/CodeBase.hpp:23, from ./libmaus2/rank/EncodeCache.hpp:23, from ./libmaus2/rank/ERankBase.hpp:24, from ./libmaus2/rank/ImpCacheLineRank.hpp:24, from ./libmaus2/wavelet/ImpCompactHuffmanWaveletTree.hpp:23, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.hpp:24, from libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.cpp:18: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair > >; _KeyOfValue = std::_Select1st > > >; _Compare = std::less; _Alloc = std::allocator > > >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type ‘std::_Rb_tree > >, std::_Select1st > > >, std::less, std::allocator > > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > > >’} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/map:61, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/rank/ChooseCache.hpp:23, from ./libmaus2/rank/CodeBase.hpp:23, from ./libmaus2/rank/EncodeCache.hpp:23, from ./libmaus2/rank/ERankBase.hpp:24, from ./libmaus2/rank/ImpCacheLineRank.hpp:24, from ./libmaus2/wavelet/ImpCompactHuffmanWaveletTree.hpp:23, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.hpp:24, from libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.cpp:18: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr >; _Compare = std::less; _Alloc = std::allocator > > >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree > >, std::_Select1st > > >, std::less, std::allocator > > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > > >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h: In member function ‘virtual std::ostream& libmaus2::util::MemTempFileContainer::getOutputTempFile(uint64_t)’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree > >, std::_Select1st > > >, std::less, std::allocator > > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > > >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabi/include/c++/8/map:60, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/rank/ChooseCache.hpp:23, from ./libmaus2/rank/CodeBase.hpp:23, from ./libmaus2/rank/EncodeCache.hpp:23, from ./libmaus2/rank/ERankBase.hpp:24, from ./libmaus2/rank/ImpCacheLineRank.hpp:24, from ./libmaus2/wavelet/ImpCompactHuffmanWaveletTree.hpp:23, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.hpp:24, from libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.cpp:18: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair > >; _KeyOfValue = std::_Select1st > > >; _Compare = std::less; _Alloc = std::allocator > > >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type ‘std::_Rb_tree > >, std::_Select1st > > >, std::less, std::allocator > > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > > >’} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/map:61, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/rank/ChooseCache.hpp:23, from ./libmaus2/rank/CodeBase.hpp:23, from ./libmaus2/rank/EncodeCache.hpp:23, from ./libmaus2/rank/ERankBase.hpp:24, from ./libmaus2/rank/ImpCacheLineRank.hpp:24, from ./libmaus2/wavelet/ImpCompactHuffmanWaveletTree.hpp:23, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.hpp:24, from libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.cpp:18: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr >; _Compare = std::less; _Alloc = std::allocator > > >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree > >, std::_Select1st > > >, std::less, std::allocator > > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > > >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabi/include/c++/8/map:60, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/rank/ChooseCache.hpp:23, from ./libmaus2/rank/CodeBase.hpp:23, from ./libmaus2/rank/EncodeCache.hpp:23, from ./libmaus2/rank/ERankBase.hpp:24, from ./libmaus2/rank/ImpCacheLineRank.hpp:24, from ./libmaus2/wavelet/ImpCompactHuffmanWaveletTree.hpp:23, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.hpp:24, from libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.cpp:18: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/map:61, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/rank/ChooseCache.hpp:23, from ./libmaus2/rank/CodeBase.hpp:23, from ./libmaus2/rank/EncodeCache.hpp:23, from ./libmaus2/rank/ERankBase.hpp:24, from ./libmaus2/rank/ImpCacheLineRank.hpp:24, from ./libmaus2/wavelet/ImpCompactHuffmanWaveletTree.hpp:23, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.hpp:24, from libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.cpp:18: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h: In member function ‘virtual std::ostream& libmaus2::util::FileTempFileContainer::getOutputTempFile(uint64_t)’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabi/include/c++/8/map:60, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/rank/ChooseCache.hpp:23, from ./libmaus2/rank/CodeBase.hpp:23, from ./libmaus2/rank/EncodeCache.hpp:23, from ./libmaus2/rank/ERankBase.hpp:24, from ./libmaus2/rank/ImpCacheLineRank.hpp:24, from ./libmaus2/wavelet/ImpCompactHuffmanWaveletTree.hpp:23, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.hpp:24, from libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.cpp:18: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/map:61, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/rank/ChooseCache.hpp:23, from ./libmaus2/rank/CodeBase.hpp:23, from ./libmaus2/rank/EncodeCache.hpp:23, from ./libmaus2/rank/ERankBase.hpp:24, from ./libmaus2/rank/ImpCacheLineRank.hpp:24, from ./libmaus2/wavelet/ImpCompactHuffmanWaveletTree.hpp:23, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.hpp:24, from libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.cpp:18: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h: In member function ‘virtual std::istream& libmaus2::util::FileTempFileContainer::openInputTempFile(uint64_t)’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/parallel/PosixSpinLock.hpp:23, from ./libmaus2/aio/StreamLock.hpp:21, from ./libmaus2/autoarray/GenericAlignedAllocation.hpp:23, from ./libmaus2/autoarray/AutoArray.hpp:26, from ./libmaus2/rank/ChooseCache.hpp:23, from ./libmaus2/rank/CodeBase.hpp:23, from ./libmaus2/rank/EncodeCache.hpp:23, from ./libmaus2/rank/ERankBase.hpp:24, from ./libmaus2/rank/ImpCacheLineRank.hpp:24, from ./libmaus2/wavelet/ImpCompactHuffmanWaveletTree.hpp:23, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.hpp:24, from libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.cpp:18: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair, std::allocator >, long long unsigned int>}; _Tp = std::pair, long long unsigned int>; _Alloc = std::allocator, long long unsigned int> >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector, long long unsigned int> >::iterator’ {aka ‘__gnu_cxx::__normal_iterator, long long unsigned int>*, std::vector, long long unsigned int> > >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In function ‘_ZN8libmaus27wavelet49ImpExternalWaveletGeneratorCompactHuffmanParallel17createFinalStreamISoEEyRT_y._omp_fn.25’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator, long long unsigned int>*, std::vector, long long unsigned int> > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In static member function ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRl(const string&, const string&, const string&, const libmaus2::huffman::HuffmanTree&, uint64_t, uint64_t) [with rl_decoder = libmaus2::huffman::RLDecoder; bool radixsort = true]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ libtool: compile: arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.cpp -o libmaus2/suffixsort/bwtb3m/la-BwtMergeSortResult.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/util/la-HugePages.lo `test -f 'libmaus2/util/HugePages.cpp' || echo './'`libmaus2/util/HugePages.cpp libtool: compile: arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/util/HugePages.cpp -fPIC -DPIC -o libmaus2/util/.libs/la-HugePages.o libtool: compile: arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/util/HugePages.cpp -o libmaus2/util/la-HugePages.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/lz/la-ZlibInterface.lo `test -f 'libmaus2/lz/ZlibInterface.cpp' || echo './'`libmaus2/lz/ZlibInterface.cpp libtool: compile: arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/lz/ZlibInterface.cpp -fPIC -DPIC -o libmaus2/lz/.libs/la-ZlibInterface.o libtool: compile: arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/lz/ZlibInterface.cpp -o libmaus2/lz/la-ZlibInterface.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/suffixsort/bwtb3m/la-BwtSelectSSA.lo `test -f 'libmaus2/suffixsort/bwtb3m/BwtSelectSSA.cpp' || echo './'`libmaus2/suffixsort/bwtb3m/BwtSelectSSA.cpp libtool: compile: arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtSelectSSA.cpp -fPIC -DPIC -o libmaus2/suffixsort/bwtb3m/.libs/la-BwtSelectSSA.o In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/aio/PosixFdInput.hpp:40, from ./libmaus2/aio/PosixFdInputWrapper.hpp:22, from ./libmaus2/aio/PosixFdInputStream.hpp:22, from ./libmaus2/aio/PosixFdInputStreamFactory.hpp:23, from ./libmaus2/aio/InputStreamFactoryContainer.hpp:23, from ./libmaus2/suffixsort/bwtb3m/BwtSelectSSA.hpp:21, from libmaus2/suffixsort/bwtb3m/BwtSelectSSA.cpp:18: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/aio/PosixFdInput.hpp:40, from ./libmaus2/aio/PosixFdInputWrapper.hpp:22, from ./libmaus2/aio/PosixFdInputStream.hpp:22, from ./libmaus2/aio/PosixFdInputStreamFactory.hpp:23, from ./libmaus2/aio/InputStreamFactoryContainer.hpp:23, from ./libmaus2/suffixsort/bwtb3m/BwtSelectSSA.hpp:21, from libmaus2/suffixsort/bwtb3m/BwtSelectSSA.cpp:18: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In function ‘uint64_t computeNF(const std::vector&, const std::vector&, uint64_t, std::vector*)’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/lz/StreamWrapperBuffer.hpp:23, from ./libmaus2/lz/StreamWrapper.hpp:22, from ./libmaus2/aio/PosixFdInput.hpp:41, from ./libmaus2/aio/PosixFdInputWrapper.hpp:22, from ./libmaus2/aio/PosixFdInputStream.hpp:22, from ./libmaus2/aio/PosixFdInputStreamFactory.hpp:23, from ./libmaus2/aio/InputStreamFactoryContainer.hpp:23, from ./libmaus2/suffixsort/bwtb3m/BwtSelectSSA.hpp:21, from libmaus2/suffixsort/bwtb3m/BwtSelectSSA.cpp:18: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = QueueElement; _Compare = __gnu_cxx::__ops::_Iter_comp_val >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ In file included from ./libmaus2/lz/StreamWrapperBuffer.hpp:23, from ./libmaus2/lz/StreamWrapper.hpp:22, from ./libmaus2/aio/PosixFdInput.hpp:41, from ./libmaus2/aio/PosixFdInputWrapper.hpp:22, from ./libmaus2/aio/PosixFdInputStream.hpp:22, from ./libmaus2/aio/PosixFdInputStreamFactory.hpp:23, from ./libmaus2/aio/InputStreamFactoryContainer.hpp:23, from ./libmaus2/suffixsort/bwtb3m/BwtSelectSSA.hpp:21, from libmaus2/suffixsort/bwtb3m/BwtSelectSSA.cpp:18: ./libmaus2/autoarray/AutoArray.hpp: In constructor ‘libmaus2::autoarray::AutoArray::AutoArray(uint64_t, bool) [with N = libmaus2::huffman::IndexEntry; libmaus2::autoarray::alloc_type atype = (libmaus2::autoarray::alloc_type)0; erase_type = libmaus2::autoarray::ArrayErase]’: ./libmaus2/autoarray/AutoArray.hpp:1801:5: warning: ‘’ may be used uninitialized in this function [-Wmaybe-uninitialized] array[i] = N(); ^~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/aio/PosixFdInput.hpp:40, from ./libmaus2/aio/PosixFdInputWrapper.hpp:22, from ./libmaus2/aio/PosixFdInputStream.hpp:22, from ./libmaus2/aio/PosixFdInputStreamFactory.hpp:23, from ./libmaus2/aio/InputStreamFactoryContainer.hpp:23, from ./libmaus2/suffixsort/bwtb3m/BwtSelectSSA.hpp:21, from libmaus2/suffixsort/bwtb3m/BwtSelectSSA.cpp:18: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::huffman::IndexEntry&}; _Tp = libmaus2::huffman::IndexEntry; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/lz/StreamWrapperBuffer.hpp:23, from ./libmaus2/lz/StreamWrapper.hpp:22, from ./libmaus2/aio/PosixFdInput.hpp:41, from ./libmaus2/aio/PosixFdInputWrapper.hpp:22, from ./libmaus2/aio/PosixFdInputStream.hpp:22, from ./libmaus2/aio/PosixFdInputStreamFactory.hpp:23, from ./libmaus2/aio/InputStreamFactoryContainer.hpp:23, from ./libmaus2/suffixsort/bwtb3m/BwtSelectSSA.hpp:21, from libmaus2/suffixsort/bwtb3m/BwtSelectSSA.cpp:18: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_val >::HeapOrderAdapter>]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/aio/PosixFdInput.hpp:40, from ./libmaus2/aio/PosixFdInputWrapper.hpp:22, from ./libmaus2/aio/PosixFdInputStream.hpp:22, from ./libmaus2/aio/PosixFdInputStreamFactory.hpp:23, from ./libmaus2/aio/InputStreamFactoryContainer.hpp:23, from ./libmaus2/suffixsort/bwtb3m/BwtSelectSSA.hpp:21, from libmaus2/suffixsort/bwtb3m/BwtSelectSSA.cpp:18: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {QueueElement}; _Tp = QueueElement; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector >::iterator’ {aka ‘__gnu_cxx::__normal_iterator > >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {QueueElement}; _Tp = QueueElement; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/lz/StreamWrapperBuffer.hpp:23, from ./libmaus2/lz/StreamWrapper.hpp:22, from ./libmaus2/aio/PosixFdInput.hpp:41, from ./libmaus2/aio/PosixFdInputWrapper.hpp:22, from ./libmaus2/aio/PosixFdInputStream.hpp:22, from ./libmaus2/aio/PosixFdInputStreamFactory.hpp:23, from ./libmaus2/aio/InputStreamFactoryContainer.hpp:23, from ./libmaus2/suffixsort/bwtb3m/BwtSelectSSA.hpp:21, from libmaus2/suffixsort/bwtb3m/BwtSelectSSA.cpp:18: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = QueueElement; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/aio/PosixFdInput.hpp:40, from ./libmaus2/aio/PosixFdInputWrapper.hpp:22, from ./libmaus2/aio/PosixFdInputStream.hpp:22, from ./libmaus2/aio/PosixFdInputStreamFactory.hpp:23, from ./libmaus2/aio/InputStreamFactoryContainer.hpp:23, from ./libmaus2/suffixsort/bwtb3m/BwtSelectSSA.hpp:21, from libmaus2/suffixsort/bwtb3m/BwtSelectSSA.cpp:18: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In static member function ‘static void libmaus2::huffman::RLEncoderTemplate<_huffmanencoderfile_type>::concatenate(const std::vector >&, const string&, bool) [with _huffmanencoderfile_type = libmaus2::huffman::HuffmanEncoderFileTemplate, libmaus2::bitio::FastWriteBitWriterTemplate >, 128, 255, false> >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from ./libmaus2/lz/StreamWrapperBuffer.hpp:23, from ./libmaus2/lz/StreamWrapper.hpp:22, from ./libmaus2/aio/PosixFdInput.hpp:41, from ./libmaus2/aio/PosixFdInputWrapper.hpp:22, from ./libmaus2/aio/PosixFdInputStream.hpp:22, from ./libmaus2/aio/PosixFdInputStreamFactory.hpp:23, from ./libmaus2/aio/InputStreamFactoryContainer.hpp:23, from ./libmaus2/suffixsort/bwtb3m/BwtSelectSSA.hpp:21, from libmaus2/suffixsort/bwtb3m/BwtSelectSSA.cpp:18: ./libmaus2/autoarray/AutoArray.hpp: In constructor ‘libmaus2::autoarray::AutoArray::AutoArray(uint64_t, bool) [with N = IsaTriple; libmaus2::autoarray::alloc_type atype = (libmaus2::autoarray::alloc_type)0; erase_type = libmaus2::autoarray::ArrayErase]’: ./libmaus2/autoarray/AutoArray.hpp:1801:5: warning: ‘’ may be used uninitialized in this function [-Wmaybe-uninitialized] array[i] = N(); ^~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/lz/StreamWrapperBuffer.hpp:23, from ./libmaus2/lz/StreamWrapper.hpp:22, from ./libmaus2/aio/PosixFdInput.hpp:41, from ./libmaus2/aio/PosixFdInputWrapper.hpp:22, from ./libmaus2/aio/PosixFdInputStream.hpp:22, from ./libmaus2/aio/PosixFdInputStreamFactory.hpp:23, from ./libmaus2/aio/InputStreamFactoryContainer.hpp:23, from ./libmaus2/suffixsort/bwtb3m/BwtSelectSSA.hpp:21, from libmaus2/suffixsort/bwtb3m/BwtSelectSSA.cpp:18: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >::HeapOrderAdapter>]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/aio/PosixFdInput.hpp:40, from ./libmaus2/aio/PosixFdInputWrapper.hpp:22, from ./libmaus2/aio/PosixFdInputStream.hpp:22, from ./libmaus2/aio/PosixFdInputStreamFactory.hpp:23, from ./libmaus2/aio/InputStreamFactoryContainer.hpp:23, from ./libmaus2/suffixsort/bwtb3m/BwtSelectSSA.hpp:21, from libmaus2/suffixsort/bwtb3m/BwtSelectSSA.cpp:18: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In constructor ‘libmaus2::sorting::MergingReadBack<_data_type, _order_type>::MergingReadBack(const string&, const std::vector&, uint64_t, uint64_t) [with _data_type = IsaTriple; _order_type = std::less]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In static member function ‘static std::vector libmaus2::sorting::MergingReadBack<_data_type, _order_type>::mergeStep(const string&, const std::vector&, uint64_t, uint64_t) [with _data_type = IsaTriple; _order_type = std::less]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::sorting::InPlaceParallelSort::MergeStepRecSerialRequest*, libmaus2::sorting::PairFileSorting::SecondComp, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>}; _Tp = libmaus2::sorting::InPlaceParallelSort::MergeStepRecSerialRequest*, libmaus2::sorting::PairFileSorting::SecondComp, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>; _Alloc = std::allocator*, libmaus2::sorting::PairFileSorting::SecondComp, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort> >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector*, libmaus2::sorting::PairFileSorting::SecondComp, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>, std::allocator*, libmaus2::sorting::PairFileSorting::SecondComp, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort> > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, libmaus2::sorting::PairFileSorting::SecondComp, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>*, std::vector*, libmaus2::sorting::PairFileSorting::SecondComp, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>, std::allocator*, libmaus2::sorting::PairFileSorting::SecondComp, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort> > > >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::sorting::InPlaceParallelSort::MergeStepRecSerialRequest*, libmaus2::sorting::PairFileSorting::FirstComp, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>}; _Tp = libmaus2::sorting::InPlaceParallelSort::MergeStepRecSerialRequest*, libmaus2::sorting::PairFileSorting::FirstComp, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>; _Alloc = std::allocator*, libmaus2::sorting::PairFileSorting::FirstComp, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort> >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector*, libmaus2::sorting::PairFileSorting::FirstComp, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>, std::allocator*, libmaus2::sorting::PairFileSorting::FirstComp, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort> > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, libmaus2::sorting::PairFileSorting::FirstComp, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>*, std::vector*, libmaus2::sorting::PairFileSorting::FirstComp, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>, std::allocator*, libmaus2::sorting::PairFileSorting::FirstComp, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort> > > >’} changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::sorting::PairFileSorting::Triple&}; _Tp = libmaus2::sorting::PairFileSorting::Triple; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector > >’} changed in GCC 7.1 In file included from /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/lz/StreamWrapperBuffer.hpp:23, from ./libmaus2/lz/StreamWrapper.hpp:22, from ./libmaus2/aio/PosixFdInput.hpp:41, from ./libmaus2/aio/PosixFdInputWrapper.hpp:22, from ./libmaus2/aio/PosixFdInputStream.hpp:22, from ./libmaus2/aio/PosixFdInputStreamFactory.hpp:23, from ./libmaus2/aio/InputStreamFactoryContainer.hpp:23, from ./libmaus2/suffixsort/bwtb3m/BwtSelectSSA.hpp:21, from libmaus2/suffixsort/bwtb3m/BwtSelectSSA.cpp:18: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = libmaus2::sorting::PairFileSorting::Triple; _Compare = __gnu_cxx::__ops::_Iter_comp_val >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/aio/PosixFdInput.hpp:40, from ./libmaus2/aio/PosixFdInputWrapper.hpp:22, from ./libmaus2/aio/PosixFdInputStream.hpp:22, from ./libmaus2/aio/PosixFdInputStreamFactory.hpp:23, from ./libmaus2/aio/InputStreamFactoryContainer.hpp:23, from ./libmaus2/suffixsort/bwtb3m/BwtSelectSSA.hpp:21, from libmaus2/suffixsort/bwtb3m/BwtSelectSSA.cpp:18: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In member function ‘void std::priority_queue<_Tp, _Sequence, _Compare>::push(const value_type&) [with _Tp = libmaus2::sorting::PairFileSorting::Triple; _Sequence = std::vector >; _Compare = libmaus2::sorting::PairFileSorting::TripleSecondComparator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/lz/StreamWrapperBuffer.hpp:23, from ./libmaus2/lz/StreamWrapper.hpp:22, from ./libmaus2/aio/PosixFdInput.hpp:41, from ./libmaus2/aio/PosixFdInputWrapper.hpp:22, from ./libmaus2/aio/PosixFdInputStream.hpp:22, from ./libmaus2/aio/PosixFdInputStreamFactory.hpp:23, from ./libmaus2/aio/InputStreamFactoryContainer.hpp:23, from ./libmaus2/suffixsort/bwtb3m/BwtSelectSSA.hpp:21, from libmaus2/suffixsort/bwtb3m/BwtSelectSSA.cpp:18: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = libmaus2::sorting::PairFileSorting::Triple; _Compare = __gnu_cxx::__ops::_Iter_comp_val >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/aio/PosixFdInput.hpp:40, from ./libmaus2/aio/PosixFdInputWrapper.hpp:22, from ./libmaus2/aio/PosixFdInputStream.hpp:22, from ./libmaus2/aio/PosixFdInputStreamFactory.hpp:23, from ./libmaus2/aio/InputStreamFactoryContainer.hpp:23, from ./libmaus2/suffixsort/bwtb3m/BwtSelectSSA.hpp:21, from libmaus2/suffixsort/bwtb3m/BwtSelectSSA.cpp:18: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In member function ‘void std::priority_queue<_Tp, _Sequence, _Compare>::push(const value_type&) [with _Tp = libmaus2::sorting::PairFileSorting::Triple; _Sequence = std::vector >; _Compare = libmaus2::sorting::PairFileSorting::TripleFirstComparator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/aio/PosixFdInput.hpp:40, from ./libmaus2/aio/PosixFdInputWrapper.hpp:22, from ./libmaus2/aio/PosixFdInputStream.hpp:22, from ./libmaus2/aio/PosixFdInputStreamFactory.hpp:23, from ./libmaus2/aio/InputStreamFactoryContainer.hpp:23, from ./libmaus2/suffixsort/bwtb3m/BwtSelectSSA.hpp:21, from libmaus2/suffixsort/bwtb3m/BwtSelectSSA.cpp:18: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In static member function ‘static void libmaus2::sorting::InPlaceParallelSort::mergestepRecLevel(iterator, uint64_t, uint64_t, order_type, base_sort&, int, int, std::vector >&, uint64_t) [with iterator = std::pair*; order_type = libmaus2::sorting::PairFileSorting::SecondComp; base_sort = libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, libmaus2::sorting::PairFileSorting::SecondComp, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>*, std::vector*, libmaus2::sorting::PairFileSorting::SecondComp, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>, std::allocator*, libmaus2::sorting::PairFileSorting::SecondComp, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort> > > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In static member function ‘static void libmaus2::sorting::InPlaceParallelSort::mergestepRecLevel(iterator, uint64_t, uint64_t, order_type, base_sort&, int, int, std::vector >&, uint64_t) [with iterator = std::pair*; order_type = libmaus2::sorting::PairFileSorting::FirstComp; base_sort = libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, libmaus2::sorting::PairFileSorting::FirstComp, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>*, std::vector*, libmaus2::sorting::PairFileSorting::FirstComp, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>, std::allocator*, libmaus2::sorting::PairFileSorting::FirstComp, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort> > > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/lz/StreamWrapperBuffer.hpp:23, from ./libmaus2/lz/StreamWrapper.hpp:22, from ./libmaus2/aio/PosixFdInput.hpp:41, from ./libmaus2/aio/PosixFdInputWrapper.hpp:22, from ./libmaus2/aio/PosixFdInputStream.hpp:22, from ./libmaus2/aio/PosixFdInputStreamFactory.hpp:23, from ./libmaus2/aio/InputStreamFactoryContainer.hpp:23, from ./libmaus2/suffixsort/bwtb3m/BwtSelectSSA.hpp:21, from libmaus2/suffixsort/bwtb3m/BwtSelectSSA.cpp:18: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = libmaus2::sorting::PairFileSorting::Triple; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/aio/PosixFdInput.hpp:40, from ./libmaus2/aio/PosixFdInputWrapper.hpp:22, from ./libmaus2/aio/PosixFdInputStream.hpp:22, from ./libmaus2/aio/PosixFdInputStreamFactory.hpp:23, from ./libmaus2/aio/InputStreamFactoryContainer.hpp:23, from ./libmaus2/suffixsort/bwtb3m/BwtSelectSSA.hpp:21, from libmaus2/suffixsort/bwtb3m/BwtSelectSSA.cpp:18: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In static member function ‘static uint64_t libmaus2::sorting::PairFileSorting::reduce(const string&, uint64_t, uint64_t, out_type&, std::ostream*) [with comparator_type = libmaus2::sorting::PairFileSorting::TripleSecondComparator; out_type = libmaus2::aio::SynchronousGenericOutput]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In static member function ‘static void libmaus2::sorting::PairFileSorting::mergeTriplesTemplate(uint64_t, const string&, uint64_t, out_type&, uint64_t, std::ostream*) [with comparator_type = libmaus2::sorting::PairFileSorting::TripleSecondComparator; out_type = libmaus2::aio::SynchronousGenericOutput; bool keepfirst = true; bool keepsecond = true]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In static member function ‘static void libmaus2::sorting::PairFileSorting::mergeTriplesTemplate(uint64_t, const string&, uint64_t, out_type&, uint64_t, std::ostream*) [with comparator_type = libmaus2::sorting::PairFileSorting::TripleSecondComparator; out_type = libmaus2::aio::SynchronousGenericOutput; bool keepfirst = false; bool keepsecond = false]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In static member function ‘static void libmaus2::sorting::PairFileSorting::mergeTriplesTemplate(uint64_t, const string&, uint64_t, out_type&, uint64_t, std::ostream*) [with comparator_type = libmaus2::sorting::PairFileSorting::TripleSecondComparator; out_type = libmaus2::aio::SynchronousGenericOutput; bool keepfirst = false; bool keepsecond = true]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In static member function ‘static void libmaus2::sorting::PairFileSorting::mergeTriplesTemplate(uint64_t, const string&, uint64_t, out_type&, uint64_t, std::ostream*) [with comparator_type = libmaus2::sorting::PairFileSorting::TripleSecondComparator; out_type = libmaus2::aio::SynchronousGenericOutput; bool keepfirst = true; bool keepsecond = false]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/lz/StreamWrapperBuffer.hpp:23, from ./libmaus2/lz/StreamWrapper.hpp:22, from ./libmaus2/aio/PosixFdInput.hpp:41, from ./libmaus2/aio/PosixFdInputWrapper.hpp:22, from ./libmaus2/aio/PosixFdInputStream.hpp:22, from ./libmaus2/aio/PosixFdInputStreamFactory.hpp:23, from ./libmaus2/aio/InputStreamFactoryContainer.hpp:23, from ./libmaus2/suffixsort/bwtb3m/BwtSelectSSA.hpp:21, from libmaus2/suffixsort/bwtb3m/BwtSelectSSA.cpp:18: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = libmaus2::sorting::PairFileSorting::Triple; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/aio/PosixFdInput.hpp:40, from ./libmaus2/aio/PosixFdInputWrapper.hpp:22, from ./libmaus2/aio/PosixFdInputStream.hpp:22, from ./libmaus2/aio/PosixFdInputStreamFactory.hpp:23, from ./libmaus2/aio/InputStreamFactoryContainer.hpp:23, from ./libmaus2/suffixsort/bwtb3m/BwtSelectSSA.hpp:21, from libmaus2/suffixsort/bwtb3m/BwtSelectSSA.cpp:18: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In static member function ‘static uint64_t libmaus2::sorting::PairFileSorting::reduce(const string&, uint64_t, uint64_t, out_type&, std::ostream*) [with comparator_type = libmaus2::sorting::PairFileSorting::TripleFirstComparator; out_type = libmaus2::aio::SynchronousGenericOutput]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In static member function ‘static void libmaus2::sorting::PairFileSorting::mergeTriplesTemplate(uint64_t, const string&, uint64_t, out_type&, uint64_t, std::ostream*) [with comparator_type = libmaus2::sorting::PairFileSorting::TripleFirstComparator; out_type = libmaus2::aio::SynchronousGenericOutput; bool keepfirst = true; bool keepsecond = true]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In static member function ‘static void libmaus2::sorting::PairFileSorting::mergeTriplesTemplate(uint64_t, const string&, uint64_t, out_type&, uint64_t, std::ostream*) [with comparator_type = libmaus2::sorting::PairFileSorting::TripleFirstComparator; out_type = libmaus2::aio::SynchronousGenericOutput; bool keepfirst = false; bool keepsecond = false]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In static member function ‘static void libmaus2::sorting::PairFileSorting::mergeTriplesTemplate(uint64_t, const string&, uint64_t, out_type&, uint64_t, std::ostream*) [with comparator_type = libmaus2::sorting::PairFileSorting::TripleFirstComparator; out_type = libmaus2::aio::SynchronousGenericOutput; bool keepfirst = true; bool keepsecond = false]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In static member function ‘static void libmaus2::sorting::PairFileSorting::mergeTriplesTemplate(uint64_t, const string&, uint64_t, out_type&, uint64_t, std::ostream*) [with comparator_type = libmaus2::sorting::PairFileSorting::TripleFirstComparator; out_type = libmaus2::aio::SynchronousGenericOutput; bool keepfirst = false; bool keepsecond = true]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/aio/PosixFdInput.hpp:40, from ./libmaus2/aio/PosixFdInputWrapper.hpp:22, from ./libmaus2/aio/PosixFdInputStream.hpp:22, from ./libmaus2/aio/PosixFdInputStreamFactory.hpp:23, from ./libmaus2/aio/InputStreamFactoryContainer.hpp:23, from ./libmaus2/suffixsort/bwtb3m/BwtSelectSSA.hpp:21, from libmaus2/suffixsort/bwtb3m/BwtSelectSSA.cpp:18: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In function ‘_ZN8libmaus210suffixsort6bwtb3m12BwtSelectSSA10computeSSAESt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS9_EERKS9_SD_SD_RKSB_S9_byyyyPSo._omp_fn.0’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ libtool: compile: arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtSelectSSA.cpp -o libmaus2/suffixsort/bwtb3m/la-BwtSelectSSA.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/aio/la-FileRemoval.lo `test -f 'libmaus2/aio/FileRemoval.cpp' || echo './'`libmaus2/aio/FileRemoval.cpp libtool: compile: arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread 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libmaus2/bambam/la-BamAlignment.lo `test -f 'libmaus2/bambam/BamAlignment.cpp' || echo './'`libmaus2/bambam/BamAlignment.cpp libtool: compile: arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/bambam/BamAlignment.cpp -fPIC -DPIC -o libmaus2/bambam/.libs/la-BamAlignment.o libtool: compile: arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/bambam/BamAlignment.cpp -o libmaus2/bambam/la-BamAlignment.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/suffixsort/bwtb3m/la-MergeStrategyMergeInput.lo `test -f 'libmaus2/suffixsort/bwtb3m/MergeStrategyMergeInput.cpp' || echo './'`libmaus2/suffixsort/bwtb3m/MergeStrategyMergeInput.cpp libtool: compile: arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/MergeStrategyMergeInput.cpp -fPIC -DPIC -o libmaus2/suffixsort/bwtb3m/.libs/la-MergeStrategyMergeInput.o In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/util/NumberSerialisation.hpp:28, from ./libmaus2/suffixsort/bwtb3m/MergeStrategyMergeGapRequestQueryObject.hpp:24, from ./libmaus2/suffixsort/bwtb3m/MergeStrategyBlock.hpp:22, from ./libmaus2/suffixsort/bwtb3m/MergeStrategyMergeInput.hpp:21, from libmaus2/suffixsort/bwtb3m/MergeStrategyMergeInput.cpp:18: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/util/NumberSerialisation.hpp:28, from ./libmaus2/suffixsort/bwtb3m/MergeStrategyMergeGapRequestQueryObject.hpp:24, from ./libmaus2/suffixsort/bwtb3m/MergeStrategyBlock.hpp:22, from ./libmaus2/suffixsort/bwtb3m/MergeStrategyMergeInput.hpp:21, from libmaus2/suffixsort/bwtb3m/MergeStrategyMergeInput.cpp:18: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In member function ‘virtual void libmaus2::suffixsort::bwtb3m::MergeStrategyBaseBlock::registerQueryPositions(const std::vector&)’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/util/NumberSerialisation.hpp:28, from ./libmaus2/suffixsort/bwtb3m/MergeStrategyMergeGapRequestQueryObject.hpp:24, from ./libmaus2/suffixsort/bwtb3m/MergeStrategyBlock.hpp:22, from ./libmaus2/suffixsort/bwtb3m/MergeStrategyMergeInput.hpp:21, from libmaus2/suffixsort/bwtb3m/MergeStrategyMergeInput.cpp:18: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::suffixsort::BwtMergeZBlock}; _Tp = libmaus2::suffixsort::BwtMergeZBlock; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘virtual void libmaus2::suffixsort::bwtb3m::MergeStrategyMergeBlock::fillGapRequestObjects(uint64_t)’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ libtool: compile: arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/MergeStrategyMergeInput.cpp -o libmaus2/suffixsort/bwtb3m/la-MergeStrategyMergeInput.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/util/la-Command.lo `test -f 'libmaus2/util/Command.cpp' || echo './'`libmaus2/util/Command.cpp libtool: compile: arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/util/Command.cpp -fPIC -DPIC -o libmaus2/util/.libs/la-Command.o libtool: compile: arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/util/Command.cpp -o libmaus2/util/la-Command.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/util/la-CommandContainer.lo `test -f 'libmaus2/util/CommandContainer.cpp' || echo './'`libmaus2/util/CommandContainer.cpp libtool: compile: arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/util/CommandContainer.cpp -fPIC -DPIC -o libmaus2/util/.libs/la-CommandContainer.o libtool: compile: arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/util/CommandContainer.cpp -o libmaus2/util/la-CommandContainer.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/aio/la-InputOutputStreamInstance.lo `test -f 'libmaus2/aio/InputOutputStreamInstance.cpp' || echo './'`libmaus2/aio/InputOutputStreamInstance.cpp libtool: compile: arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/aio/InputOutputStreamInstance.cpp -fPIC -DPIC -o libmaus2/aio/.libs/la-InputOutputStreamInstance.o libtool: compile: arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/aio/InputOutputStreamInstance.cpp -o libmaus2/aio/la-InputOutputStreamInstance.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/dazzler/align/la-OverlapInfo.lo `test -f 'libmaus2/dazzler/align/OverlapInfo.cpp' || echo './'`libmaus2/dazzler/align/OverlapInfo.cpp libtool: compile: arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/dazzler/align/OverlapInfo.cpp -fPIC -DPIC -o libmaus2/dazzler/align/.libs/la-OverlapInfo.o libtool: compile: arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/dazzler/align/OverlapInfo.cpp -o libmaus2/dazzler/align/la-OverlapInfo.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/dazzler/align/la-OverlapDataInterface.lo `test -f 'libmaus2/dazzler/align/OverlapDataInterface.cpp' || echo './'`libmaus2/dazzler/align/OverlapDataInterface.cpp libtool: compile: arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/dazzler/align/OverlapDataInterface.cpp -fPIC -DPIC -o libmaus2/dazzler/align/.libs/la-OverlapDataInterface.o libtool: compile: arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/dazzler/align/OverlapDataInterface.cpp -o libmaus2/dazzler/align/la-OverlapDataInterface.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/util/la-PathTools.lo `test -f 'libmaus2/util/PathTools.cpp' || echo './'`libmaus2/util/PathTools.cpp libtool: compile: arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/util/PathTools.cpp -fPIC -DPIC -o libmaus2/util/.libs/la-PathTools.o libtool: compile: arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/util/PathTools.cpp -o libmaus2/util/la-PathTools.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/exception/la-LibMausException.lo `test -f 'libmaus2/exception/LibMausException.cpp' || echo './'`libmaus2/exception/LibMausException.cpp libtool: compile: arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/exception/LibMausException.cpp -fPIC -DPIC -o libmaus2/exception/.libs/la-LibMausException.o libtool: compile: arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall 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libmaus2/lcs/la-OverlapComputation.lo libmaus2/lcs/la-HashContainer.lo libmaus2/lcs/la-HashContainer2.lo libmaus2/digest/la-md5.lo libmaus2/util/la-I386CacheLineSize.lo libmaus2/math/la-primes16.lo libmaus2/util/la-OutputFileNameTools.lo libmaus2/select/la-ESelectBase.lo libmaus2/bambam/la-CigarStringParser.lo libmaus2/graph/la-EdgeList.lo libmaus2/fastx/la-Phred.lo libmaus2/network/la-sendReceiveFd.lo libmaus2/lz/la-SnappyCompress.lo libmaus2/bambam/la-CollatingBamDecoder.lo libmaus2/bambam/la-ReadEndsContainer.lo libmaus2/bambam/la-ReadEnds.lo libmaus2/huffman/la-IndexLoaderBase.lo libmaus2/bambam/la-BamAlignmentDecoderBase.lo libmaus2/bambam/la-StrCmpNum.lo libmaus2/huffman/la-KvInitResult.lo libmaus2/fm/la-MausFmToBwaConversion.lo libmaus2/util/la-TempFileNameGenerator.lo libmaus2/util/la-TempFileNameGeneratorState.lo libmaus2/util/la-ArgInfo.lo libmaus2/util/la-Array832.lo libmaus2/util/la-Array864.lo libmaus2/util/la-BitList.lo libmaus2/util/la-VarBitList.lo libmaus2/util/la-Concat.lo libmaus2/util/la-ConcatRequest.lo libmaus2/util/la-ConsoleColor.lo libmaus2/util/la-Demangle.lo libmaus2/util/la-DynamicLoading.lo libmaus2/util/la-GetFileSize.lo libmaus2/util/la-Histogram.lo libmaus2/util/la-HistogramSet.lo libmaus2/util/la-IncreasingList.lo libmaus2/util/la-IntervalTree.lo libmaus2/util/la-GenericIntervalTree.lo libmaus2/util/la-LogPipe.lo libmaus2/util/la-LogPipeMultiplex.lo libmaus2/util/la-LogPipeMultiplexGeneric.lo libmaus2/util/la-LookupIntervalTree.lo libmaus2/digest/la-md5_interface.lo libmaus2/util/la-MemLimit.lo libmaus2/util/la-MemUsage.lo libmaus2/util/la-NearestNeighbourDictionary.lo libmaus2/util/la-NegativeDifferenceArray32.lo libmaus2/util/la-NegativeDifferenceArray64.lo libmaus2/util/la-nstat.lo libmaus2/util/la-PositiveDifferenceArray32.lo libmaus2/util/la-PositiveDifferenceArray64.lo libmaus2/util/la-PosixExecute.lo libmaus2/util/la-PosixFileDescriptor.lo libmaus2/util/la-PosixInputFile.lo libmaus2/util/la-SaturatingCounter.lo libmaus2/util/la-StringSerialisation.lo libmaus2/util/la-SuccinctBorderArray.lo libmaus2/util/la-Terminal.lo libmaus2/util/la-OctetString.lo libmaus2/util/la-Utf8String.lo libmaus2/util/la-Utf8BlockIndexDecoder.lo libmaus2/util/la-Utf8BlockIndex.lo libmaus2/util/la-Utf8DecoderBuffer.lo libmaus2/util/la-Utf8DecoderWrapper.lo libmaus2/suffixtree/la-CompressedSuffixTree.lo libmaus2/bambam/la-AlignmentValidity.lo libmaus2/bambam/la-BamFlagBase.lo libmaus2/bambam/la-ReadGroup.lo libmaus2/bambam/la-DuplicationMetrics.lo libmaus2/bambam/la-BamDefaultAdapters.lo libmaus2/bambam/la-BamRange.lo libmaus2/graph/la-GraphEdge.lo libmaus2/bambam/la-BamIndexBinChunk.lo libmaus2/bambam/la-BamIndexLinearChunk.lo libmaus2/huffman/la-HuffmanTree.lo libmaus2/bambam/la-BamAlignmentDecoderInfo.lo libmaus2/lz/la-Lz4Base.lo libmaus2/lz/la-Lz4Compress.lo libmaus2/lz/la-Lz4DecoderBuffer.lo libmaus2/lz/la-lz4.lo libmaus2/fm/la-BidirectionalIndexInterval.lo 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libmaus2/fastx/la-DNAIndexMetaDataBigBand.lo libmaus2/fastx/la-DNAIndexMetaDataBigBandBiDir.lo libmaus2/lcs/la-EnvelopeFragment.lo libmaus2/rank/la-DNARankBiDirRange.lo libmaus2/lcs/la-NNPTraceElement.lo libmaus2/lcs/la-NNPTraceContainer.lo libmaus2/lcs/la-NNPAlignResult.lo libmaus2/suffixsort/bwtb3m/la-MergeStrategyMergeGapRequest.lo libmaus2/suffixsort/bwtb3m/la-BwtMergeSort.lo libmaus2/suffixsort/bwtb3m/la-BwtComputeSSA.lo libmaus2/fastx/la-FastAToCompact4BigBand.lo libmaus2/suffixsort/bwtb3m/la-BwtMergeSortResult.lo libmaus2/util/la-HugePages.lo libmaus2/lz/la-ZlibInterface.lo libmaus2/suffixsort/bwtb3m/la-BwtSelectSSA.lo libmaus2/aio/la-FileRemoval.lo libmaus2/rank/la-DNARankMEM.lo libmaus2/lcs/la-ChainAddQueueElement.lo libmaus2/lcs/la-Chain.lo libmaus2/lcs/la-ChainNode.lo libmaus2/lcs/la-ChainNodeInfo.lo libmaus2/lcs/la-ChainRemoveQueueElement.lo libmaus2/lcs/la-ChainSplayTreeNode.lo libmaus2/timing/la-RealTimeClock.lo libmaus2/aio/la-PosixFdOutputStreamFactory.lo 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libmaus2/rmq/.libs/la-FischerSystematicSuccinctRMQ.o libmaus2/lcp/.libs/la-OracleLCP.o libmaus2/util/.libs/la-StackTrace.o libmaus2/lcs/.libs/la-OverlapComputation.o libmaus2/lcs/.libs/la-HashContainer.o libmaus2/lcs/.libs/la-HashContainer2.o libmaus2/digest/.libs/la-md5.o libmaus2/util/.libs/la-I386CacheLineSize.o libmaus2/math/.libs/la-primes16.o libmaus2/util/.libs/la-OutputFileNameTools.o libmaus2/select/.libs/la-ESelectBase.o libmaus2/bambam/.libs/la-CigarStringParser.o libmaus2/graph/.libs/la-EdgeList.o libmaus2/fastx/.libs/la-Phred.o libmaus2/network/.libs/la-sendReceiveFd.o libmaus2/lz/.libs/la-SnappyCompress.o libmaus2/bambam/.libs/la-CollatingBamDecoder.o libmaus2/bambam/.libs/la-ReadEndsContainer.o libmaus2/bambam/.libs/la-ReadEnds.o libmaus2/huffman/.libs/la-IndexLoaderBase.o libmaus2/bambam/.libs/la-BamAlignmentDecoderBase.o libmaus2/bambam/.libs/la-StrCmpNum.o libmaus2/huffman/.libs/la-KvInitResult.o libmaus2/fm/.libs/la-MausFmToBwaConversion.o libmaus2/util/.libs/la-TempFileNameGenerator.o libmaus2/util/.libs/la-TempFileNameGeneratorState.o libmaus2/util/.libs/la-ArgInfo.o libmaus2/util/.libs/la-Array832.o libmaus2/util/.libs/la-Array864.o libmaus2/util/.libs/la-BitList.o libmaus2/util/.libs/la-VarBitList.o libmaus2/util/.libs/la-Concat.o libmaus2/util/.libs/la-ConcatRequest.o libmaus2/util/.libs/la-ConsoleColor.o libmaus2/util/.libs/la-Demangle.o libmaus2/util/.libs/la-DynamicLoading.o libmaus2/util/.libs/la-GetFileSize.o libmaus2/util/.libs/la-Histogram.o libmaus2/util/.libs/la-HistogramSet.o libmaus2/util/.libs/la-IncreasingList.o libmaus2/util/.libs/la-IntervalTree.o libmaus2/util/.libs/la-GenericIntervalTree.o libmaus2/util/.libs/la-LogPipe.o libmaus2/util/.libs/la-LogPipeMultiplex.o libmaus2/util/.libs/la-LogPipeMultiplexGeneric.o libmaus2/util/.libs/la-LookupIntervalTree.o libmaus2/digest/.libs/la-md5_interface.o libmaus2/util/.libs/la-MemLimit.o libmaus2/util/.libs/la-MemUsage.o libmaus2/util/.libs/la-NearestNeighbourDictionary.o libmaus2/util/.libs/la-NegativeDifferenceArray32.o libmaus2/util/.libs/la-NegativeDifferenceArray64.o libmaus2/util/.libs/la-nstat.o libmaus2/util/.libs/la-PositiveDifferenceArray32.o libmaus2/util/.libs/la-PositiveDifferenceArray64.o libmaus2/util/.libs/la-PosixExecute.o libmaus2/util/.libs/la-PosixFileDescriptor.o libmaus2/util/.libs/la-PosixInputFile.o libmaus2/util/.libs/la-SaturatingCounter.o libmaus2/util/.libs/la-StringSerialisation.o libmaus2/util/.libs/la-SuccinctBorderArray.o libmaus2/util/.libs/la-Terminal.o libmaus2/util/.libs/la-OctetString.o libmaus2/util/.libs/la-Utf8String.o libmaus2/util/.libs/la-Utf8BlockIndexDecoder.o libmaus2/util/.libs/la-Utf8BlockIndex.o libmaus2/util/.libs/la-Utf8DecoderBuffer.o libmaus2/util/.libs/la-Utf8DecoderWrapper.o libmaus2/suffixtree/.libs/la-CompressedSuffixTree.o libmaus2/bambam/.libs/la-AlignmentValidity.o libmaus2/bambam/.libs/la-BamFlagBase.o libmaus2/bambam/.libs/la-ReadGroup.o 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libmaus2/lz/.libs/la-RAZFIndex.o libmaus2/fastx/.libs/la-FastAIndexEntry.o libmaus2/fastx/.libs/la-FastAIndex.o libmaus2/network/.libs/la-HttpAbsoluteUrl.o libmaus2/hashing/.libs/la-Crc32.o libmaus2/hashing/.libs/la-MurmurHash3.o libmaus2/lz/.libs/la-IGzipDeflate.o libmaus2/lcs/.libs/la-LocalBaseConstants.o libmaus2/lcs/.libs/la-LocalEditDistanceResult.o libmaus2/bambam/.libs/la-BamHeaderParserStateBase.o libmaus2/bambam/.libs/la-GeneFlatFile.o libmaus2/bambam/.libs/la-GeneFlatFileEntry.o libmaus2/trie/.libs/la-SimpleTrie.o libmaus2/network/.libs/la-GnuTLSInit.o libmaus2/network/.libs/la-GnuTLSSocket.o libmaus2/bambam/.libs/la-BamStreamingMarkDuplicatesSupport.o libmaus2/alignment/.libs/la-FactorMatchInfo.o libmaus2/alignment/.libs/la-KmerInfo.o libmaus2/bambam/.libs/la-SamInfoBase.o libmaus2/digest/.libs/la-SHA1.o libmaus2/digest/.libs/la-SHA2_224.o libmaus2/digest/.libs/la-SHA2_256.o libmaus2/digest/.libs/la-SHA2_384.o libmaus2/digest/.libs/la-SHA2_512.o libmaus2/digest/.libs/la-CRC32.o libmaus2/digest/.libs/la-CRC32C_Core.o libmaus2/digest/.libs/la-CRC32C.o libmaus2/digest/.libs/la-CRC32_Core.o libmaus2/bambam/parallel/.libs/la-ValidationFragment.o libmaus2/bambam/parallel/.libs/la-GenericInputControlStreamInfo.o libmaus2/fastx/.libs/la-NameInfoBase.o libmaus2/bambam/parallel/.libs/la-RefIdInterval.o libmaus2/fastx/.libs/la-RefPathToken.o libmaus2/fastx/.libs/la-RefPathTokenVector.o libmaus2/dazzler/db/.libs/la-FastaInfo.o libmaus2/dazzler/db/.libs/la-IndexBase.o libmaus2/dazzler/db/.libs/la-DatabaseFile.o libmaus2/dazzler/db/.libs/la-Read.o libmaus2/dazzler/align/.libs/la-Path.o libmaus2/dazzler/align/.libs/la-Overlap.o libmaus2/lcs/.libs/la-AlignmentStatistics.o libmaus2/fastx/.libs/la-SingleWordDNABitBuffer.o libmaus2/util/.libs/la-LongestIncreasingSubsequenceExtendedResult.o libmaus2/lcs/.libs/la-AlignerFactory.o libmaus2/lcs/.libs/la-BandedAlignerFactory.o libmaus2/aio/.libs/la-InputStreamInstance.o libmaus2/lcs/.libs/la-DalignerNP.o libmaus2/aio/.libs/la-OutputStreamInstance.o libmaus2/aio/.libs/la-OutputStreamFactoryContainer.o libmaus2/dazzler/align/.libs/la-TraceBlock.o libmaus2/dazzler/align/.libs/la-ApproximateRun.o libmaus2/suffixsort/.libs/la-BwtMergeBlockSortRequest.o libmaus2/dazzler/align/.libs/la-OverlapMeta.o libmaus2/lcs/.libs/la-DalignerLocalAlignment.o libmaus2/dazzler/align/.libs/la-Tandem.o libmaus2/dazzler/align/.libs/la-TandemVector.o libmaus2/math/.libs/la-GmpInteger.o libmaus2/math/.libs/la-GmpFloat.o libmaus2/dazzler/align/.libs/la-TracePoint.o libmaus2/lz/.libs/la-XzDecoder.o libmaus2/util/.libs/la-ArgParser.o libmaus2/lcs/.libs/la-FragmentEnvelopeYScore.o libmaus2/lcs/.libs/la-FragmentEnvelopeFragment.o libmaus2/fastx/.libs/la-DNAIndexMetaDataSequence.o libmaus2/fastx/.libs/la-DNAIndexMetaData.o libmaus2/bambam/.libs/la-PileVectorElement.o libmaus2/digest/.libs/la-SHA3_256.o libmaus2/fastx/.libs/la-DNAIndexMetaDataBigBand.o libmaus2/fastx/.libs/la-DNAIndexMetaDataBigBandBiDir.o libmaus2/lcs/.libs/la-EnvelopeFragment.o libmaus2/rank/.libs/la-DNARankBiDirRange.o libmaus2/lcs/.libs/la-NNPTraceElement.o libmaus2/lcs/.libs/la-NNPTraceContainer.o libmaus2/lcs/.libs/la-NNPAlignResult.o libmaus2/suffixsort/bwtb3m/.libs/la-MergeStrategyMergeGapRequest.o libmaus2/suffixsort/bwtb3m/.libs/la-BwtMergeSort.o libmaus2/suffixsort/bwtb3m/.libs/la-BwtComputeSSA.o libmaus2/fastx/.libs/la-FastAToCompact4BigBand.o libmaus2/suffixsort/bwtb3m/.libs/la-BwtMergeSortResult.o libmaus2/util/.libs/la-HugePages.o libmaus2/lz/.libs/la-ZlibInterface.o libmaus2/suffixsort/bwtb3m/.libs/la-BwtSelectSSA.o libmaus2/aio/.libs/la-FileRemoval.o libmaus2/rank/.libs/la-DNARankMEM.o libmaus2/lcs/.libs/la-ChainAddQueueElement.o libmaus2/lcs/.libs/la-Chain.o libmaus2/lcs/.libs/la-ChainNode.o libmaus2/lcs/.libs/la-ChainNodeInfo.o libmaus2/lcs/.libs/la-ChainRemoveQueueElement.o libmaus2/lcs/.libs/la-ChainSplayTreeNode.o libmaus2/timing/.libs/la-RealTimeClock.o libmaus2/aio/.libs/la-PosixFdOutputStreamFactory.o libmaus2/dazzler/align/.libs/la-OverlapHeader.o libmaus2/bambam/.libs/la-BamAlignment.o libmaus2/suffixsort/bwtb3m/.libs/la-MergeStrategyMergeInput.o libmaus2/util/.libs/la-Command.o libmaus2/util/.libs/la-CommandContainer.o libmaus2/aio/.libs/la-InputOutputStreamInstance.o libmaus2/dazzler/align/.libs/la-OverlapInfo.o libmaus2/dazzler/align/.libs/la-OverlapDataInterface.o libmaus2/util/.libs/la-PathTools.o libmaus2/exception/.libs/la-LibMausException.o -ldl -L/usr/lib/arm-linux-gnueabi -lrt -lz -L/usr/lib/gcc-cross/arm-linux-gnueabi/8 -L/usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/lib -L/lib/arm-linux-gnueabi -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc-cross/arm-linux-gnueabi/8/crtendS.o /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/lib/crtn.o -pthread -fopenmp -g -O2 -fstack-protector-strong -pthread -pthread -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,relro -pthread -fopenmp -Wl,-soname -Wl,libmaus2.so.2 -o .libs/libmaus2.so.2.0.611 libtool: link: (cd ".libs" && rm -f "libmaus2.so.2" && ln -s "libmaus2.so.2.0.611" "libmaus2.so.2") libtool: link: (cd ".libs" && rm -f "libmaus2.so" && ln -s "libmaus2.so.2.0.611" "libmaus2.so") libtool: link: arm-linux-gnueabi-ar cru .libs/libmaus2.a libmaus2/la-StaticInitialization.o libmaus2/autoarray/la-AutoArray.o libmaus2/bitio/la-CompactArray.o libmaus2/rank/la-RankTable.o libmaus2/rank/la-log2table.o libmaus2/fastx/la-isFastQ.o libmaus2/wavelet/la-toWaveletTreeBits.o libmaus2/suffixsort/la-divsufsort.o libmaus2/rmq/la-FischerSystematicSuccinctRMQ.o libmaus2/lcp/la-OracleLCP.o libmaus2/util/la-StackTrace.o libmaus2/lcs/la-OverlapComputation.o libmaus2/lcs/la-HashContainer.o libmaus2/lcs/la-HashContainer2.o libmaus2/digest/la-md5.o libmaus2/util/la-I386CacheLineSize.o libmaus2/math/la-primes16.o libmaus2/util/la-OutputFileNameTools.o libmaus2/select/la-ESelectBase.o libmaus2/bambam/la-CigarStringParser.o libmaus2/graph/la-EdgeList.o libmaus2/fastx/la-Phred.o libmaus2/network/la-sendReceiveFd.o libmaus2/lz/la-SnappyCompress.o libmaus2/bambam/la-CollatingBamDecoder.o libmaus2/bambam/la-ReadEndsContainer.o libmaus2/bambam/la-ReadEnds.o libmaus2/huffman/la-IndexLoaderBase.o libmaus2/bambam/la-BamAlignmentDecoderBase.o libmaus2/bambam/la-StrCmpNum.o libmaus2/huffman/la-KvInitResult.o libmaus2/fm/la-MausFmToBwaConversion.o libmaus2/util/la-TempFileNameGenerator.o libmaus2/util/la-TempFileNameGeneratorState.o libmaus2/util/la-ArgInfo.o libmaus2/util/la-Array832.o libmaus2/util/la-Array864.o libmaus2/util/la-BitList.o libmaus2/util/la-VarBitList.o libmaus2/util/la-Concat.o libmaus2/util/la-ConcatRequest.o libmaus2/util/la-ConsoleColor.o libmaus2/util/la-Demangle.o libmaus2/util/la-DynamicLoading.o libmaus2/util/la-GetFileSize.o libmaus2/util/la-Histogram.o libmaus2/util/la-HistogramSet.o libmaus2/util/la-IncreasingList.o libmaus2/util/la-IntervalTree.o 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--tag=CXX --mode=compile arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/lcs/simd_align_256_la-SimdX86BandedGlobalAlignmentY256_8.lo `test -f 'libmaus2/lcs/SimdX86BandedGlobalAlignmentY256_8.cpp' || echo './'`libmaus2/lcs/SimdX86BandedGlobalAlignmentY256_8.cpp libtool: compile: arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/lcs/SimdX86BandedGlobalAlignmentY256_8.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/simd_align_256_la-SimdX86BandedGlobalAlignmentY256_8.o libtool: compile: arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/lcs/SimdX86BandedGlobalAlignmentY256_8.cpp -o libmaus2/lcs/simd_align_256_la-SimdX86BandedGlobalAlignmentY256_8.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/lcs/simd_align_256_la-SimdX86BandedGlobalAlignmentY256_16.lo `test -f 'libmaus2/lcs/SimdX86BandedGlobalAlignmentY256_16.cpp' || echo './'`libmaus2/lcs/SimdX86BandedGlobalAlignmentY256_16.cpp libtool: compile: arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/lcs/SimdX86BandedGlobalAlignmentY256_16.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/simd_align_256_la-SimdX86BandedGlobalAlignmentY256_16.o libtool: compile: arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/lcs/SimdX86BandedGlobalAlignmentY256_16.cpp -o libmaus2/lcs/simd_align_256_la-SimdX86BandedGlobalAlignmentY256_16.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/lcs/simd_align_256_la-SimdX86BandedGlobalAlignmentScoreY256_16.lo `test -f 'libmaus2/lcs/SimdX86BandedGlobalAlignmentScoreY256_16.cpp' || echo './'`libmaus2/lcs/SimdX86BandedGlobalAlignmentScoreY256_16.cpp libtool: compile: arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/lcs/SimdX86BandedGlobalAlignmentScoreY256_16.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/simd_align_256_la-SimdX86BandedGlobalAlignmentScoreY256_16.o libtool: compile: arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/lcs/SimdX86BandedGlobalAlignmentScoreY256_16.cpp -o libmaus2/lcs/simd_align_256_la-SimdX86BandedGlobalAlignmentScoreY256_16.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/lcs/simd_align_256_la-SimdX86GlobalAlignmentY256_8.lo `test -f 'libmaus2/lcs/SimdX86GlobalAlignmentY256_8.cpp' || echo './'`libmaus2/lcs/SimdX86GlobalAlignmentY256_8.cpp libtool: compile: arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/lcs/SimdX86GlobalAlignmentY256_8.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/simd_align_256_la-SimdX86GlobalAlignmentY256_8.o libtool: compile: arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/lcs/SimdX86GlobalAlignmentY256_8.cpp -o libmaus2/lcs/simd_align_256_la-SimdX86GlobalAlignmentY256_8.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/lcs/simd_align_256_la-SimdX86GlobalAlignmentY256_16.lo `test -f 'libmaus2/lcs/SimdX86GlobalAlignmentY256_16.cpp' || echo './'`libmaus2/lcs/SimdX86GlobalAlignmentY256_16.cpp libtool: compile: arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/lcs/SimdX86GlobalAlignmentY256_16.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/simd_align_256_la-SimdX86GlobalAlignmentY256_16.o libtool: compile: arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/lcs/SimdX86GlobalAlignmentY256_16.cpp -o libmaus2/lcs/simd_align_256_la-SimdX86GlobalAlignmentY256_16.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/lcs/simd_align_256_la-AlignmentOneAgainstManyAVX2.lo `test -f 'libmaus2/lcs/AlignmentOneAgainstManyAVX2.cpp' || echo './'`libmaus2/lcs/AlignmentOneAgainstManyAVX2.cpp libtool: compile: arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/lcs/AlignmentOneAgainstManyAVX2.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/simd_align_256_la-AlignmentOneAgainstManyAVX2.o libmaus2/lcs/AlignmentOneAgainstManyAVX2.cpp: In member function ‘virtual void libmaus2::lcs::AlignmentOneAgainstManyAVX2::process(const uint8_t*, const uint8_t*, const std::pair*, uint64_t, libmaus2::autoarray::AutoArray&)’: libmaus2/lcs/AlignmentOneAgainstManyAVX2.cpp:344:18: warning: unused parameter ‘qa’ [-Wunused-parameter] uint8_t const * qa, ~~~~~~~~~~~~~~~~^~ libmaus2/lcs/AlignmentOneAgainstManyAVX2.cpp:345:18: warning: unused parameter ‘qe’ [-Wunused-parameter] uint8_t const * qe, ~~~~~~~~~~~~~~~~^~ libmaus2/lcs/AlignmentOneAgainstManyAVX2.cpp:346:46: warning: unused parameter ‘MA’ [-Wunused-parameter] std::pair const * MA, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from ./libmaus2/lcs/AlignmentOneAgainstManyAVX2.hpp:24, from libmaus2/lcs/AlignmentOneAgainstManyAVX2.cpp:19: ./libmaus2/lcs/NP.hpp: In instantiation of ‘int64_t libmaus2::lcs::NP::npTemplate(iter_a, iter_a, iter_b, iter_b) [with iter_a = const unsigned char*; iter_b = const unsigned char*; bool self_check = true; int64_t = long long int]’: ./libmaus2/lcs/NP.hpp:116:53: required from ‘int64_t libmaus2::lcs::NP::np(iter_a, iter_a, iter_b, iter_b, bool) [with iter_a = const unsigned char*; iter_b = const unsigned char*; int64_t = long long int]’ ./libmaus2/lcs/NP.hpp:104:23: required from here ./libmaus2/lcs/NP.hpp:908:46: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘long long int’ [-Wsign-compare] if ( AlignmentTraceContainer::capacity() <= std::min(an,bn)+ed ) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ ./libmaus2/lcs/NP.hpp: In instantiation of ‘int64_t libmaus2::lcs::NP::npTemplate(iter_a, iter_a, iter_b, iter_b) [with iter_a = const unsigned char*; iter_b = const unsigned char*; bool self_check = false; int64_t = long long int]’: ./libmaus2/lcs/NP.hpp:118:54: required from ‘int64_t libmaus2::lcs::NP::np(iter_a, iter_a, iter_b, iter_b, bool) [with iter_a = const unsigned char*; iter_b = const unsigned char*; int64_t = long long int]’ ./libmaus2/lcs/NP.hpp:104:23: required from here ./libmaus2/lcs/NP.hpp:908:46: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘long long int’ [-Wsign-compare] libtool: compile: arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/lcs/AlignmentOneAgainstManyAVX2.cpp -o libmaus2/lcs/simd_align_256_la-AlignmentOneAgainstManyAVX2.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabi-g++ -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -version-info 2:611:0 -Wl,-z,relro -o libmaus2_simd_align_256.la -rpath /usr/lib/arm-linux-gnueabi libmaus2/lcs/simd_align_256_la-SimdX86GlobalAlignmentConstants256.lo libmaus2/lcs/simd_align_256_la-SimdX86BandedGlobalAlignmentY256_8.lo libmaus2/lcs/simd_align_256_la-SimdX86BandedGlobalAlignmentY256_16.lo libmaus2/lcs/simd_align_256_la-SimdX86BandedGlobalAlignmentScoreY256_16.lo libmaus2/lcs/simd_align_256_la-SimdX86GlobalAlignmentY256_8.lo libmaus2/lcs/simd_align_256_la-SimdX86GlobalAlignmentY256_16.lo libmaus2/lcs/simd_align_256_la-AlignmentOneAgainstManyAVX2.lo -lrt -L/usr/lib/arm-linux-gnueabi -lz libtool: link: arm-linux-gnueabi-g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/lib/crti.o /usr/lib/gcc-cross/arm-linux-gnueabi/8/crtbeginS.o libmaus2/lcs/.libs/simd_align_256_la-SimdX86GlobalAlignmentConstants256.o libmaus2/lcs/.libs/simd_align_256_la-SimdX86BandedGlobalAlignmentY256_8.o libmaus2/lcs/.libs/simd_align_256_la-SimdX86BandedGlobalAlignmentY256_16.o libmaus2/lcs/.libs/simd_align_256_la-SimdX86BandedGlobalAlignmentScoreY256_16.o libmaus2/lcs/.libs/simd_align_256_la-SimdX86GlobalAlignmentY256_8.o libmaus2/lcs/.libs/simd_align_256_la-SimdX86GlobalAlignmentY256_16.o libmaus2/lcs/.libs/simd_align_256_la-AlignmentOneAgainstManyAVX2.o -lrt -L/usr/lib/arm-linux-gnueabi -lz -L/usr/lib/gcc-cross/arm-linux-gnueabi/8 -L/usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/lib -L/lib/arm-linux-gnueabi -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc-cross/arm-linux-gnueabi/8/crtendS.o /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/lib/crtn.o -pthread -fopenmp -g -O2 -fstack-protector-strong -pthread -pthread -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,relro -pthread -fopenmp -Wl,-soname -Wl,libmaus2_simd_align_256.so.2 -o .libs/libmaus2_simd_align_256.so.2.0.611 libtool: link: (cd ".libs" && rm -f "libmaus2_simd_align_256.so.2" && ln -s "libmaus2_simd_align_256.so.2.0.611" "libmaus2_simd_align_256.so.2") libtool: link: (cd ".libs" && rm -f "libmaus2_simd_align_256.so" && ln -s "libmaus2_simd_align_256.so.2.0.611" "libmaus2_simd_align_256.so") libtool: link: arm-linux-gnueabi-ar cru .libs/libmaus2_simd_align_256.a libmaus2/lcs/simd_align_256_la-SimdX86GlobalAlignmentConstants256.o libmaus2/lcs/simd_align_256_la-SimdX86BandedGlobalAlignmentY256_8.o libmaus2/lcs/simd_align_256_la-SimdX86BandedGlobalAlignmentY256_16.o libmaus2/lcs/simd_align_256_la-SimdX86BandedGlobalAlignmentScoreY256_16.o libmaus2/lcs/simd_align_256_la-SimdX86GlobalAlignmentY256_8.o libmaus2/lcs/simd_align_256_la-SimdX86GlobalAlignmentY256_16.o libmaus2/lcs/simd_align_256_la-AlignmentOneAgainstManyAVX2.o arm-linux-gnueabi-ar: `u' modifier ignored since `D' is the default (see `U') libtool: link: arm-linux-gnueabi-ranlib .libs/libmaus2_simd_align_256.a libtool: link: ( cd ".libs" && rm -f "libmaus2_simd_align_256.la" && ln -s "../libmaus2_simd_align_256.la" "libmaus2_simd_align_256.la" ) /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testAIO test/testAIO-testAIO.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/arm-linux-gnueabi -lz libtool: link: arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testAIO test/testAIO-testAIO.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/arm-linux-gnueabi -lz -fopenmp -pthread arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testbitbtree-testbitbtree.o `test -f 'test/testbitbtree.cpp' || echo './'`test/testbitbtree.cpp In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/parallel/PosixSpinLock.hpp:23, from ./libmaus2/aio/StreamLock.hpp:21, from ./libmaus2/autoarray/GenericAlignedAllocation.hpp:23, from ./libmaus2/autoarray/AutoArray.hpp:26, from ./libmaus2/bitbtree/bitbtree.hpp:29, from test/testbitbtree.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bitbtree::BitBTree<1, 1>::VectorConstructionTuple}; _Tp = libmaus2::bitbtree::BitBTree<1, 1>::VectorConstructionTuple; _Alloc = std::allocator::VectorConstructionTuple>]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::VectorConstructionTuple, std::allocator::VectorConstructionTuple> >::iterator’ {aka ‘__gnu_cxx::__normal_iterator::VectorConstructionTuple*, std::vector::VectorConstructionTuple, std::allocator::VectorConstructionTuple> > >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {libmaus2::bitbtree::BitBTree<1, 1>::VectorConstructionTuple}; _Tp = libmaus2::bitbtree::BitBTree<1, 1>::VectorConstructionTuple; _Alloc = std::allocator::VectorConstructionTuple>]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::VectorConstructionTuple*, std::vector::VectorConstructionTuple, std::allocator::VectorConstructionTuple> > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testbitbtree test/testbitbtree-testbitbtree.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/arm-linux-gnueabi -lz libtool: link: arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testbitbtree test/testbitbtree-testbitbtree.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/arm-linux-gnueabi -lz -fopenmp -pthread arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testBitIO-testBitIO.o `test -f 'test/testBitIO.cpp' || echo './'`test/testBitIO.cpp In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/GetFileSize.hpp:25, from ./libmaus2/aio/SynchronousGenericInput.hpp:23, from ./libmaus2/bitio/BitVectorInput.hpp:22, from test/testBitIO.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/util/GetFileSize.hpp:26, from ./libmaus2/aio/SynchronousGenericInput.hpp:23, from ./libmaus2/bitio/BitVectorInput.hpp:22, from test/testBitIO.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/util/GetFileSize.hpp:26, from ./libmaus2/aio/SynchronousGenericInput.hpp:23, from ./libmaus2/bitio/BitVectorInput.hpp:22, from test/testBitIO.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/util/GetFileSize.hpp:26, from ./libmaus2/aio/SynchronousGenericInput.hpp:23, from ./libmaus2/bitio/BitVectorInput.hpp:22, from test/testBitIO.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/GetFileSize.hpp:25, from ./libmaus2/aio/SynchronousGenericInput.hpp:23, from ./libmaus2/bitio/BitVectorInput.hpp:22, from test/testBitIO.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In function ‘void bubbleSortCheck()’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/util/GetFileSize.hpp:26, from ./libmaus2/aio/SynchronousGenericInput.hpp:23, from ./libmaus2/bitio/BitVectorInput.hpp:22, from test/testBitIO.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testBitIO test/testBitIO-testBitIO.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/arm-linux-gnueabi -lz libtool: link: arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testBitIO test/testBitIO-testBitIO.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/arm-linux-gnueabi -lz -fopenmp -pthread arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testbtree-testbtree.o `test -f 'test/testbtree.cpp' || echo './'`test/testbtree.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testbtree test/testbtree-testbtree.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/arm-linux-gnueabi -lz libtool: link: arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testbtree test/testbtree-testbtree.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/arm-linux-gnueabi -lz -fopenmp -pthread arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testBWTDyn-testBWTDyn.o `test -f 'test/testBWTDyn.cpp' || echo './'`test/testBWTDyn.cpp In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/parallel/PosixSpinLock.hpp:23, from ./libmaus2/aio/StreamLock.hpp:21, from ./libmaus2/autoarray/GenericAlignedAllocation.hpp:23, from ./libmaus2/autoarray/AutoArray.hpp:26, from ./libmaus2/bitbtree/bitbtree.hpp:29, from ./libmaus2/wavelet/DynamicWaveletTree.hpp:25, from test/testBWTDyn.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long int&}; _Tp = long long int; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/parallel/PosixSpinLock.hpp:23, from ./libmaus2/aio/StreamLock.hpp:21, from ./libmaus2/autoarray/GenericAlignedAllocation.hpp:23, from ./libmaus2/autoarray/AutoArray.hpp:26, from ./libmaus2/bitbtree/bitbtree.hpp:29, from ./libmaus2/wavelet/DynamicWaveletTree.hpp:25, from test/testBWTDyn.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In member function ‘virtual void libmaus2::huffman::HuffmanTreeLeaf::symbolVector(std::vector&) const’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/parallel/PosixSpinLock.hpp:23, from ./libmaus2/aio/StreamLock.hpp:21, from ./libmaus2/autoarray/GenericAlignedAllocation.hpp:23, from ./libmaus2/autoarray/AutoArray.hpp:26, from ./libmaus2/bitbtree/bitbtree.hpp:29, from ./libmaus2/wavelet/DynamicWaveletTree.hpp:25, from test/testBWTDyn.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/parallel/PosixSpinLock.hpp:23, from ./libmaus2/aio/StreamLock.hpp:21, from ./libmaus2/autoarray/GenericAlignedAllocation.hpp:23, from ./libmaus2/autoarray/AutoArray.hpp:26, from ./libmaus2/bitbtree/bitbtree.hpp:29, from ./libmaus2/wavelet/DynamicWaveletTree.hpp:25, from test/testBWTDyn.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In member function ‘virtual void libmaus2::huffman::HuffmanTreeLeaf::depthVector(std::vector&, uint64_t) const’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/map:60, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/bitbtree/bitbtree.hpp:29, from ./libmaus2/wavelet/DynamicWaveletTree.hpp:25, from test/testBWTDyn.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = const libmaus2::huffman::HuffmanTreeLeaf*; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = const libmaus2::huffman::HuffmanTreeInnerNode*; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 In file included from /usr/arm-linux-gnueabi/include/c++/8/map:61, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/bitbtree/bitbtree.hpp:29, from ./libmaus2/wavelet/DynamicWaveletTree.hpp:25, from test/testBWTDyn.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h: In member function ‘virtual void libmaus2::huffman::HuffmanTreeInnerNode::toDot(std::ostream&) const’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testBWTDyn test/testBWTDyn-testBWTDyn.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/arm-linux-gnueabi -lz libtool: link: arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testBWTDyn test/testBWTDyn-testBWTDyn.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/arm-linux-gnueabi -lz -fopenmp -pthread arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testBWTHufDyn-testBWTHufDyn.o `test -f 'test/testBWTHufDyn.cpp' || echo './'`test/testBWTHufDyn.cpp In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/parallel/PosixSpinLock.hpp:23, from ./libmaus2/aio/StreamLock.hpp:21, from ./libmaus2/autoarray/GenericAlignedAllocation.hpp:23, from ./libmaus2/autoarray/AutoArray.hpp:26, from ./libmaus2/bitbtree/bitbtree.hpp:29, from ./libmaus2/wavelet/DynamicHuffmanWaveletTree.hpp:23, from test/testBWTHufDyn.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long int&}; _Tp = long long int; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/parallel/PosixSpinLock.hpp:23, from ./libmaus2/aio/StreamLock.hpp:21, from ./libmaus2/autoarray/GenericAlignedAllocation.hpp:23, from ./libmaus2/autoarray/AutoArray.hpp:26, from ./libmaus2/bitbtree/bitbtree.hpp:29, from ./libmaus2/wavelet/DynamicHuffmanWaveletTree.hpp:23, from test/testBWTHufDyn.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In member function ‘virtual void libmaus2::huffman::HuffmanTreeLeaf::symbolVector(std::vector&) const’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/parallel/PosixSpinLock.hpp:23, from ./libmaus2/aio/StreamLock.hpp:21, from ./libmaus2/autoarray/GenericAlignedAllocation.hpp:23, from ./libmaus2/autoarray/AutoArray.hpp:26, from ./libmaus2/bitbtree/bitbtree.hpp:29, from ./libmaus2/wavelet/DynamicHuffmanWaveletTree.hpp:23, from test/testBWTHufDyn.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/parallel/PosixSpinLock.hpp:23, from ./libmaus2/aio/StreamLock.hpp:21, from ./libmaus2/autoarray/GenericAlignedAllocation.hpp:23, from ./libmaus2/autoarray/AutoArray.hpp:26, from ./libmaus2/bitbtree/bitbtree.hpp:29, from ./libmaus2/wavelet/DynamicHuffmanWaveletTree.hpp:23, from test/testBWTHufDyn.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In member function ‘virtual void libmaus2::huffman::HuffmanTreeLeaf::depthVector(std::vector&, uint64_t) const’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/map:60, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/bitbtree/bitbtree.hpp:29, from ./libmaus2/wavelet/DynamicHuffmanWaveletTree.hpp:23, from test/testBWTHufDyn.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = const libmaus2::huffman::HuffmanTreeLeaf*; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = const libmaus2::huffman::HuffmanTreeInnerNode*; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 In file included from /usr/arm-linux-gnueabi/include/c++/8/map:61, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/bitbtree/bitbtree.hpp:29, from ./libmaus2/wavelet/DynamicHuffmanWaveletTree.hpp:23, from test/testBWTHufDyn.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h: In member function ‘virtual void libmaus2::huffman::HuffmanTreeInnerNode::toDot(std::ostream&) const’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabi/include/c++/8/map:60, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/bitbtree/bitbtree.hpp:29, from ./libmaus2/wavelet/DynamicHuffmanWaveletTree.hpp:23, from test/testBWTHufDyn.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/map:61, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/bitbtree/bitbtree.hpp:29, from ./libmaus2/wavelet/DynamicHuffmanWaveletTree.hpp:23, from test/testBWTHufDyn.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h: In function ‘void computeBWT(const string&, std::ostream&)’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:518:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:518:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testBWTHufDyn test/testBWTHufDyn-testBWTHufDyn.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/arm-linux-gnueabi -lz libtool: link: arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testBWTHufDyn test/testBWTHufDyn-testBWTHufDyn.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/arm-linux-gnueabi -lz -fopenmp -pthread arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testDivSufSort-testDivSufSort.o `test -f 'test/testDivSufSort.cpp' || echo './'`test/testDivSufSort.cpp In file included from /usr/arm-linux-gnueabi/include/c++/8/map:60, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/bitio/CompactArray.hpp:23, from test/testDivSufSort.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair > >; _KeyOfValue = std::_Select1st > > >; _Compare = std::less; _Alloc = std::allocator > > >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type ‘std::_Rb_tree > >, std::_Select1st > > >, std::less, std::allocator > > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > > >’} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/map:61, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/bitio/CompactArray.hpp:23, from test/testDivSufSort.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr >; _Compare = std::less; _Alloc = std::allocator > > >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree > >, std::_Select1st > > >, std::less, std::allocator > > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > > >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h: In member function ‘virtual std::ostream& libmaus2::util::MemTempFileContainer::getOutputTempFile(uint64_t)’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree > >, std::_Select1st > > >, std::less, std::allocator > > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > > >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h: In member function ‘virtual std::ostream& libmaus2::util::MemTempFileContainer::openOutputTempFile(uint64_t)’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree > >, std::_Select1st > > >, std::less, std::allocator > > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > > >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree > >, std::_Select1st > > >, std::less, std::allocator > > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > > >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabi/include/c++/8/map:60, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/bitio/CompactArray.hpp:23, from test/testDivSufSort.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/map:61, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/bitio/CompactArray.hpp:23, from test/testDivSufSort.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h: In member function ‘virtual void libmaus2::util::MemTempFileContainer::closeOutputTempFile(uint64_t)’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabi/include/c++/8/map:60, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/bitio/CompactArray.hpp:23, from test/testDivSufSort.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair > >; _KeyOfValue = std::_Select1st > > >; _Compare = std::less; _Alloc = std::allocator > > >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type ‘std::_Rb_tree > >, std::_Select1st > > >, std::less, std::allocator > > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > > >’} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/map:61, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/bitio/CompactArray.hpp:23, from test/testDivSufSort.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr >; _Compare = std::less; _Alloc = std::allocator > > >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree > >, std::_Select1st > > >, std::less, std::allocator > > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > > >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h: In member function ‘virtual std::istream& libmaus2::util::MemTempFileContainer::openInputTempFile(uint64_t)’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree > >, std::_Select1st > > >, std::less, std::allocator > > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > > >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree > >, std::_Select1st > > >, std::less, std::allocator > > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > > >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree > >, std::_Select1st > > >, std::less, std::allocator > > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > > >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabi/include/c++/8/map:60, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/bitio/CompactArray.hpp:23, from test/testDivSufSort.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/map:61, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/bitio/CompactArray.hpp:23, from test/testDivSufSort.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h: In member function ‘virtual std::ostream& libmaus2::util::FileTempFileContainer::getOutputTempFile(uint64_t)’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h: In member function ‘virtual std::ostream& libmaus2::util::FileTempFileContainer::openOutputTempFile(uint64_t)’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabi/include/c++/8/map:60, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/bitio/CompactArray.hpp:23, from test/testDivSufSort.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/map:61, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/bitio/CompactArray.hpp:23, from test/testDivSufSort.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h: In member function ‘virtual std::istream& libmaus2::util::FileTempFileContainer::openInputTempFile(uint64_t)’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h: In function ‘void testTempFileContainer()’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h: In function ‘void testBin()’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree > >, std::_Select1st > > >, std::less, std::allocator > > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > > >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testDivSufSort test/testDivSufSort-testDivSufSort.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/arm-linux-gnueabi -lz libtool: link: arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testDivSufSort test/testDivSufSort-testDivSufSort.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/arm-linux-gnueabi -lz -fopenmp -pthread arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testDNABitWords-testDNABitWords.o `test -f 'test/testDNABitWords.cpp' || echo './'`test/testDNABitWords.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testDNABitWords test/testDNABitWords-testDNABitWords.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/arm-linux-gnueabi -lz libtool: link: arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testDNABitWords test/testDNABitWords-testDNABitWords.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/arm-linux-gnueabi -lz -fopenmp -pthread arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testFastRead-testFastRead.o `test -f 'test/testFastRead.cpp' || echo './'`test/testFastRead.cpp In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/parallel/PosixSpinLock.hpp:23, from ./libmaus2/aio/StreamLock.hpp:21, from ./libmaus2/autoarray/GenericAlignedAllocation.hpp:23, from ./libmaus2/autoarray/AutoArray.hpp:26, from ./libmaus2/aio/AsynchronousReader.hpp:23, from test/testFastRead.cpp:26: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::fastx::FastInterval}; _Tp = libmaus2::fastx::FastInterval; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/parallel/PosixSpinLock.hpp:23, from ./libmaus2/aio/StreamLock.hpp:21, from ./libmaus2/autoarray/GenericAlignedAllocation.hpp:23, from ./libmaus2/autoarray/AutoArray.hpp:26, from ./libmaus2/aio/AsynchronousReader.hpp:23, from test/testFastRead.cpp:26: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In static member function ‘static std::vector libmaus2::fastx::FastQReaderTemplate<_reader_base_type>::computeCommonNameAlignedFrags(const std::vector >&, uint64_t, uint64_t, strip_type&) [with strip_type = libmaus2::fastx::FirstWhiteSpaceSlashStrip; _reader_base_type = libmaus2::aio::SynchronousFastReaderBase]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/parallel/PosixSpinLock.hpp:23, from ./libmaus2/aio/StreamLock.hpp:21, from ./libmaus2/autoarray/GenericAlignedAllocation.hpp:23, from ./libmaus2/autoarray/AutoArray.hpp:26, from ./libmaus2/aio/AsynchronousReader.hpp:23, from test/testFastRead.cpp:26: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testFastRead test/testFastRead-testFastRead.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/arm-linux-gnueabi -lz libtool: link: arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testFastRead test/testFastRead-testFastRead.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/arm-linux-gnueabi -lz -fopenmp -pthread arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testHuffman-testHuffman.o `test -f 'test/testHuffman.cpp' || echo './'`test/testHuffman.cpp In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/huffman/IndexLoaderBase.hpp:24, from test/testHuffman.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long int&}; _Tp = long long int; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/huffman/IndexLoaderBase.hpp:24, from test/testHuffman.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In member function ‘virtual void libmaus2::huffman::HuffmanTreeLeaf::symbolVector(std::vector&) const’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/huffman/IndexLoaderBase.hpp:24, from test/testHuffman.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/huffman/IndexLoaderBase.hpp:24, from test/testHuffman.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In member function ‘virtual void libmaus2::huffman::HuffmanTreeLeaf::depthVector(std::vector&, uint64_t) const’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In member function ‘void libmaus2::wavelet::HuffmanWaveletTree::HuffmanWaveletTreeNavigationNode::offsetVector(std::vector&) const’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/huffman/IndexLoaderBase.hpp:24, from test/testHuffman.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector > >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/huffman/IndexLoaderBase.hpp:24, from test/testHuffman.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In member function ‘uint64_t libmaus2::wavelet::HuffmanWaveletTree::serialize(std::ostream&) const’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/map:60, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/lz/StreamWrapperBuffer.hpp:23, from ./libmaus2/lz/StreamWrapper.hpp:22, from ./libmaus2/aio/PosixFdInput.hpp:41, from ./libmaus2/aio/PosixFdInputWrapper.hpp:22, from ./libmaus2/aio/PosixFdInputStream.hpp:22, from ./libmaus2/aio/PosixFdInputStreamFactory.hpp:23, from ./libmaus2/aio/InputStreamFactoryContainer.hpp:23, from ./libmaus2/huffman/IndexLoaderBase.hpp:25, from test/testHuffman.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = const libmaus2::huffman::HuffmanTreeLeaf*; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = const libmaus2::huffman::HuffmanTreeInnerNode*; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 In file included from /usr/arm-linux-gnueabi/include/c++/8/map:61, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/lz/StreamWrapperBuffer.hpp:23, from ./libmaus2/lz/StreamWrapper.hpp:22, from ./libmaus2/aio/PosixFdInput.hpp:41, from ./libmaus2/aio/PosixFdInputWrapper.hpp:22, from ./libmaus2/aio/PosixFdInputStream.hpp:22, from ./libmaus2/aio/PosixFdInputStreamFactory.hpp:23, from ./libmaus2/aio/InputStreamFactoryContainer.hpp:23, from ./libmaus2/huffman/IndexLoaderBase.hpp:25, from test/testHuffman.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h: In member function ‘virtual void libmaus2::huffman::HuffmanTreeInnerNode::toDot(std::ostream&) const’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabi/include/c++/8/map:60, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/lz/StreamWrapperBuffer.hpp:23, from ./libmaus2/lz/StreamWrapper.hpp:22, from ./libmaus2/aio/PosixFdInput.hpp:41, from ./libmaus2/aio/PosixFdInputWrapper.hpp:22, from ./libmaus2/aio/PosixFdInputStream.hpp:22, from ./libmaus2/aio/PosixFdInputStreamFactory.hpp:23, from ./libmaus2/aio/InputStreamFactoryContainer.hpp:23, from ./libmaus2/huffman/IndexLoaderBase.hpp:25, from test/testHuffman.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/huffman/IndexLoaderBase.hpp:24, from test/testHuffman.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In member function ‘std::pair, std::vector > libmaus2::huffman::EncodeTable::symsOrderedByCode() const [with unsigned int words = 1]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/lz/StreamWrapperBuffer.hpp:23, from ./libmaus2/lz/StreamWrapper.hpp:22, from ./libmaus2/aio/PosixFdInput.hpp:41, from ./libmaus2/aio/PosixFdInputWrapper.hpp:22, from ./libmaus2/aio/PosixFdInputStream.hpp:22, from ./libmaus2/aio/PosixFdInputStreamFactory.hpp:23, from ./libmaus2/aio/InputStreamFactoryContainer.hpp:23, from ./libmaus2/huffman/IndexLoaderBase.hpp:25, from test/testHuffman.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 __move_median_to_first(_Iterator __result,_Iterator __a, _Iterator __b, ^~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Val_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1880:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 __final_insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1880:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1880:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/lz/StreamWrapperBuffer.hpp:23, from ./libmaus2/lz/StreamWrapper.hpp:22, from ./libmaus2/aio/PosixFdInput.hpp:41, from ./libmaus2/aio/PosixFdInputWrapper.hpp:22, from ./libmaus2/aio/PosixFdInputStream.hpp:22, from ./libmaus2/aio/PosixFdInputStreamFactory.hpp:23, from ./libmaus2/aio/InputStreamFactoryContainer.hpp:23, from ./libmaus2/huffman/IndexLoaderBase.hpp:25, from test/testHuffman.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/lz/StreamWrapperBuffer.hpp:23, from ./libmaus2/lz/StreamWrapper.hpp:22, from ./libmaus2/aio/PosixFdInput.hpp:41, from ./libmaus2/aio/PosixFdInputWrapper.hpp:22, from ./libmaus2/aio/PosixFdInputStream.hpp:22, from ./libmaus2/aio/PosixFdInputStreamFactory.hpp:23, from ./libmaus2/aio/InputStreamFactoryContainer.hpp:23, from ./libmaus2/huffman/IndexLoaderBase.hpp:25, from test/testHuffman.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 __heap_select(_RandomAccessIterator __first, ^~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 std::__move_median_to_first(__first, __first + 1, __mid, __last - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1933:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 std::__heap_select(__first, __middle, __last, __comp); ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void testRangeQuantile()’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1971:31: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 std::__final_insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1971:31: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 std::__final_insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/map:61, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/lz/StreamWrapperBuffer.hpp:23, from ./libmaus2/lz/StreamWrapper.hpp:22, from ./libmaus2/aio/PosixFdInput.hpp:41, from ./libmaus2/aio/PosixFdInputWrapper.hpp:22, from ./libmaus2/aio/PosixFdInputStream.hpp:22, from ./libmaus2/aio/PosixFdInputStreamFactory.hpp:23, from ./libmaus2/aio/InputStreamFactoryContainer.hpp:23, from ./libmaus2/huffman/IndexLoaderBase.hpp:25, from test/testHuffman.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h: In static member function ‘static void libmaus2::wavelet::HuffmanWaveletTree::testTree()’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:518:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:518:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testHuffman test/testHuffman-testHuffman.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/arm-linux-gnueabi -lz libtool: link: arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testHuffman test/testHuffman-testHuffman.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/arm-linux-gnueabi -lz -fopenmp -pthread arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testIsa-testIsa.o `test -f 'test/testIsa.cpp' || echo './'`test/testIsa.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testIsa test/testIsa-testIsa.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/arm-linux-gnueabi -lz libtool: link: arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testIsa test/testIsa-testIsa.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/arm-linux-gnueabi -lz -fopenmp -pthread arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testkmp-testkmp.o `test -f 'test/testkmp.cpp' || echo './'`test/testkmp.cpp In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/parallel/PosixSpinLock.hpp:23, from ./libmaus2/aio/StreamLock.hpp:21, from ./libmaus2/autoarray/GenericAlignedAllocation.hpp:23, from ./libmaus2/autoarray/AutoArray.hpp:26, from ./libmaus2/util/BorderArray.hpp:22, from test/testkmp.cpp:21: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long int&}; _Tp = long long int; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/map:60, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/util/BorderArray.hpp:22, from test/testkmp.cpp:21: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h: In member function ‘std::pair std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:2149:5: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/parallel/PosixSpinLock.hpp:23, from ./libmaus2/aio/StreamLock.hpp:21, from ./libmaus2/autoarray/GenericAlignedAllocation.hpp:23, from ./libmaus2/autoarray/AutoArray.hpp:26, from ./libmaus2/util/BorderArray.hpp:22, from test/testkmp.cpp:21: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In static member function ‘static bool libmaus2::util::SuccinctBorderArray::check(const string&)’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/map:61, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/util/BorderArray.hpp:22, from test/testkmp.cpp:21: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h: In function ‘void testSuccinctBorderArray()’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:518:8: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:518:8: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:518:8: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:518:8: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h: In function ‘void testBorderArray()’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:518:8: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:518:8: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:518:8: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:518:8: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/parallel/PosixSpinLock.hpp:23, from ./libmaus2/aio/StreamLock.hpp:21, from ./libmaus2/autoarray/GenericAlignedAllocation.hpp:23, from ./libmaus2/autoarray/AutoArray.hpp:26, from ./libmaus2/util/BorderArray.hpp:22, from test/testkmp.cpp:21: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/parallel/PosixSpinLock.hpp:23, from ./libmaus2/aio/StreamLock.hpp:21, from ./libmaus2/autoarray/GenericAlignedAllocation.hpp:23, from ./libmaus2/autoarray/AutoArray.hpp:26, from ./libmaus2/util/BorderArray.hpp:22, from test/testkmp.cpp:21: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In function ‘void testSimpleDynamic()’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ test/testkmp.cpp:94:1: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 } ^ test/testkmp.cpp:94:1: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 test/testkmp.cpp:94:1: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 test/testkmp.cpp:94:1: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 test/testkmp.cpp:94:1: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 test/testkmp.cpp:94:1: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 test/testkmp.cpp:94:1: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 test/testkmp.cpp:94:1: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 test/testkmp.cpp:94:1: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 test/testkmp.cpp:94:1: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 test/testkmp.cpp:94:1: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 test/testkmp.cpp:94:1: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/parallel/PosixSpinLock.hpp:23, from ./libmaus2/aio/StreamLock.hpp:21, from ./libmaus2/autoarray/GenericAlignedAllocation.hpp:23, from ./libmaus2/autoarray/AutoArray.hpp:26, from ./libmaus2/util/BorderArray.hpp:22, from test/testkmp.cpp:21: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In function ‘void testLazyFailureFunctionRandom(const string&)’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In function ‘void findSplitCommon(const string&, uint64_t, uint64_t, int64_t)’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ test/testkmp.cpp:126:1: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 } ^ test/testkmp.cpp:126:1: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 test/testkmp.cpp:126:1: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 test/testkmp.cpp:126:1: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 test/testkmp.cpp:126:1: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 test/testkmp.cpp:126:1: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 test/testkmp.cpp:126:1: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 test/testkmp.cpp:126:1: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 test/testkmp.cpp:126:1: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testkmp test/testkmp-testkmp.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/arm-linux-gnueabi -lz libtool: link: arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testkmp test/testkmp-testkmp.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/arm-linux-gnueabi -lz -fopenmp -pthread arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testlz-testlz.o `test -f 'test/testlz.cpp' || echo './'`test/testlz.cpp In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/parallel/PosixSpinLock.hpp:23, from ./libmaus2/aio/StreamLock.hpp:21, from ./libmaus2/autoarray/GenericAlignedAllocation.hpp:23, from ./libmaus2/autoarray/AutoArray.hpp:26, from ./libmaus2/lz/GzipOutputStreamBuffer.hpp:24, from ./libmaus2/lz/GzipOutputStream.hpp:22, from test/testlz.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::ReadGroup&}; _Tp = libmaus2::bambam::ReadGroup; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::trie::LinearTrieStateBase}; _Tp = libmaus2::trie::LinearTrieStateBase; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’} changed in GCC 7.1 In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/parallel/PosixSpinLock.hpp:23, from ./libmaus2/aio/StreamLock.hpp:21, from ./libmaus2/autoarray/GenericAlignedAllocation.hpp:23, from ./libmaus2/autoarray/AutoArray.hpp:26, from ./libmaus2/lz/GzipOutputStreamBuffer.hpp:24, from ./libmaus2/lz/GzipOutputStream.hpp:22, from test/testlz.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In static member function ‘static std::vector libmaus2::bambam::BamHeader::getReadGroups(const string&)’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from ./libmaus2/bambam/BamHeader.hpp:35, from test/testlz.cpp:100: ./libmaus2/hashing/ConstantStringHash.hpp: In constructor ‘libmaus2::hashing::ConstantStringHash::ConstantStringHash(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]’: ./libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 ConstantStringHash(iterator ita, iterator ite, uint64_t const maxn = 64*1024) ^~~~~~~~~~~~~~~~~~ ./libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/lz/GzipOutputStreamBuffer.hpp:24, from ./libmaus2/lz/GzipOutputStream.hpp:22, from test/testlz.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/lz/GzipOutputStreamBuffer.hpp:24, from ./libmaus2/lz/GzipOutputStream.hpp:22, from test/testlz.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/lz/GzipOutputStreamBuffer.hpp:24, from ./libmaus2/lz/GzipOutputStream.hpp:22, from test/testlz.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/parallel/PosixSpinLock.hpp:23, from ./libmaus2/aio/StreamLock.hpp:21, from ./libmaus2/autoarray/GenericAlignedAllocation.hpp:23, from ./libmaus2/autoarray/AutoArray.hpp:26, from ./libmaus2/lz/GzipOutputStreamBuffer.hpp:24, from ./libmaus2/lz/GzipOutputStream.hpp:22, from test/testlz.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘typename libmaus2::trie::LinearHashTrie<_char_type, id_type>::unique_ptr_type libmaus2::trie::Trie<_char_type>::toLinearHashTrie() const [with id_type = unsigned int; _char_type = char]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/parallel/PosixSpinLock.hpp:23, from ./libmaus2/aio/StreamLock.hpp:21, from ./libmaus2/autoarray/GenericAlignedAllocation.hpp:23, from ./libmaus2/autoarray/AutoArray.hpp:26, from ./libmaus2/lz/GzipOutputStreamBuffer.hpp:24, from ./libmaus2/lz/GzipOutputStream.hpp:22, from test/testlz.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/lz/GzipOutputStreamBuffer.hpp:24, from ./libmaus2/lz/GzipOutputStream.hpp:22, from test/testlz.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ./libmaus2/bambam/BamHeader.hpp:35, from test/testlz.cpp:100: ./libmaus2/hashing/ConstantStringHash.hpp: In member function ‘void libmaus2::bambam::BamHeader::initSetup()’: ./libmaus2/hashing/ConstantStringHash.hpp:86:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 shared_ptr_type s(new this_type(ita,ite,maxn)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/parallel/PosixSpinLock.hpp:23, from ./libmaus2/aio/StreamLock.hpp:21, from ./libmaus2/autoarray/GenericAlignedAllocation.hpp:23, from ./libmaus2/autoarray/AutoArray.hpp:26, from ./libmaus2/lz/GzipOutputStreamBuffer.hpp:24, from ./libmaus2/lz/GzipOutputStream.hpp:22, from test/testlz.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void libmaus2::bambam::BamHeader::init(stream_type&) [with stream_type = libmaus2::util::ContainerGetObject >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testlz test/testlz-testlz.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/arm-linux-gnueabi -lz libtool: link: arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testlz test/testlz-testlz.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/arm-linux-gnueabi -lz -fopenmp -pthread arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testOS-testOS.o `test -f 'test/testOS.cpp' || echo './'`test/testOS.cpp In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/parallel/PosixSpinLock.hpp:23, from ./libmaus2/aio/StreamLock.hpp:21, from ./libmaus2/autoarray/GenericAlignedAllocation.hpp:23, from ./libmaus2/autoarray/AutoArray.hpp:26, from ./libmaus2/util/SaturatingCounter.hpp:24, from test/testOS.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::pair&}; _Tp = std::pair; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector > >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector > >’} changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/parallel/PosixSpinLock.hpp:23, from ./libmaus2/aio/StreamLock.hpp:21, from ./libmaus2/autoarray/GenericAlignedAllocation.hpp:23, from ./libmaus2/autoarray/AutoArray.hpp:26, from ./libmaus2/util/SaturatingCounter.hpp:24, from test/testOS.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In function ‘std::vector > libmaus2::suffixsort::mergeParIntervals(std::vector >)’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testOS test/testOS-testOS.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/arm-linux-gnueabi -lz libtool: link: arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testOS test/testOS-testOS.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/arm-linux-gnueabi -lz -fopenmp -pthread arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testRank-testRank.o `test -f 'test/testRank.cpp' || echo './'`test/testRank.cpp In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/parallel/PosixSpinLock.hpp:23, from ./libmaus2/aio/StreamLock.hpp:21, from ./libmaus2/autoarray/GenericAlignedAllocation.hpp:23, from ./libmaus2/autoarray/AutoArray.hpp:26, from ./libmaus2/rank/ChooseCache.hpp:23, from ./libmaus2/rank/CodeBase.hpp:23, from ./libmaus2/rank/EncodeCache.hpp:23, from ./libmaus2/rank/ERankBase.hpp:24, from test/testRank.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/parallel/PosixSpinLock.hpp:23, from ./libmaus2/aio/StreamLock.hpp:21, from ./libmaus2/autoarray/GenericAlignedAllocation.hpp:23, from ./libmaus2/autoarray/AutoArray.hpp:26, from ./libmaus2/rank/ChooseCache.hpp:23, from ./libmaus2/rank/CodeBase.hpp:23, from ./libmaus2/rank/EncodeCache.hpp:23, from ./libmaus2/rank/ERankBase.hpp:24, from test/testRank.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In member function ‘void BalancedParentheses::checkOperations() const’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In member function ‘void libmaus2::bitio::FastWriteBitWriterTemplate<_data_type, _data_iterator, basemask, fullmask, _write_safe>::writeInternal(N, unsigned int) [with N = long long unsigned int; _data_type = long long unsigned int; _data_iterator = std::back_insert_iterator >; _data_type basemask = 9223372036854775808; _data_type fullmask = 18446744073709551615; bool _write_safe = true]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/parallel/PosixSpinLock.hpp:23, from ./libmaus2/aio/StreamLock.hpp:21, from ./libmaus2/autoarray/GenericAlignedAllocation.hpp:23, from ./libmaus2/autoarray/AutoArray.hpp:26, from ./libmaus2/rank/ChooseCache.hpp:23, from ./libmaus2/rank/CodeBase.hpp:23, from ./libmaus2/rank/EncodeCache.hpp:23, from ./libmaus2/rank/ERankBase.hpp:24, from test/testRank.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/parallel/PosixSpinLock.hpp:23, from ./libmaus2/aio/StreamLock.hpp:21, from ./libmaus2/autoarray/GenericAlignedAllocation.hpp:23, from ./libmaus2/autoarray/AutoArray.hpp:26, from ./libmaus2/rank/ChooseCache.hpp:23, from ./libmaus2/rank/CodeBase.hpp:23, from ./libmaus2/rank/EncodeCache.hpp:23, from ./libmaus2/rank/ERankBase.hpp:24, from test/testRank.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In function ‘void checkStreams64(unsigned int)’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In function ‘bool checkE2Append(unsigned int)’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/rank/ChooseCache.hpp:23, from ./libmaus2/rank/CodeBase.hpp:23, from ./libmaus2/rank/EncodeCache.hpp:23, from ./libmaus2/rank/ERankBase.hpp:24, from test/testRank.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator::RangeCountStackElement*, std::vector::RangeCountStackElement, std::allocator::RangeCountStackElement> > >; _Distance = int; _Tp = libmaus2::wavelet::WaveletTree::RangeCountStackElement; _Compare = __gnu_cxx::__ops::_Iter_comp_val::RangeCountStackElement> >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::RangeCountStackElement*, std::vector::RangeCountStackElement, std::allocator::RangeCountStackElement> > >’ changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/parallel/PosixSpinLock.hpp:23, from ./libmaus2/aio/StreamLock.hpp:21, from ./libmaus2/autoarray/GenericAlignedAllocation.hpp:23, from ./libmaus2/autoarray/AutoArray.hpp:26, from ./libmaus2/rank/ChooseCache.hpp:23, from ./libmaus2/rank/CodeBase.hpp:23, from ./libmaus2/rank/EncodeCache.hpp:23, from ./libmaus2/rank/ERankBase.hpp:24, from test/testRank.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::wavelet::WaveletTree::RangeCountStackElement&}; _Tp = libmaus2::wavelet::WaveletTree::RangeCountStackElement; _Alloc = std::allocator::RangeCountStackElement>]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::RangeCountStackElement, std::allocator::RangeCountStackElement> >::iterator’ {aka ‘__gnu_cxx::__normal_iterator::RangeCountStackElement*, std::vector::RangeCountStackElement, std::allocator::RangeCountStackElement> > >’} changed in GCC 7.1 In file included from /usr/arm-linux-gnueabi/include/c++/8/map:60, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/rank/ChooseCache.hpp:23, from ./libmaus2/rank/CodeBase.hpp:23, from ./libmaus2/rank/EncodeCache.hpp:23, from ./libmaus2/rank/ERankBase.hpp:24, from test/testRank.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h: In member function ‘std::pair std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = char; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:2149:5: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = char; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = char; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 In file included from /usr/arm-linux-gnueabi/include/c++/8/map:61, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/rank/ChooseCache.hpp:23, from ./libmaus2/rank/CodeBase.hpp:23, from ./libmaus2/rank/EncodeCache.hpp:23, from ./libmaus2/rank/ERankBase.hpp:24, from test/testRank.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h: In function ‘void testFastRank()’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:518:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:518:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabi/include/c++/8/map:60, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/rank/ChooseCache.hpp:23, from ./libmaus2/rank/CodeBase.hpp:23, from ./libmaus2/rank/EncodeCache.hpp:23, from ./libmaus2/rank/ERankBase.hpp:24, from test/testRank.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h: In member function ‘std::pair std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = unsigned int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:2149:5: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/parallel/PosixSpinLock.hpp:23, from ./libmaus2/aio/StreamLock.hpp:21, from ./libmaus2/autoarray/GenericAlignedAllocation.hpp:23, from ./libmaus2/autoarray/AutoArray.hpp:26, from ./libmaus2/rank/ChooseCache.hpp:23, from ./libmaus2/rank/CodeBase.hpp:23, from ./libmaus2/rank/EncodeCache.hpp:23, from ./libmaus2/rank/ERankBase.hpp:24, from test/testRank.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::wavelet::WaveletTree::RangeCountStackElement}; _Tp = libmaus2::wavelet::WaveletTree::RangeCountStackElement; _Alloc = std::allocator::RangeCountStackElement>]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::RangeCountStackElement, std::allocator::RangeCountStackElement> >::iterator’ {aka ‘__gnu_cxx::__normal_iterator::RangeCountStackElement*, std::vector::RangeCountStackElement, std::allocator::RangeCountStackElement> > >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/rank/ChooseCache.hpp:23, from ./libmaus2/rank/CodeBase.hpp:23, from ./libmaus2/rank/EncodeCache.hpp:23, from ./libmaus2/rank/ERankBase.hpp:24, from test/testRank.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator::RangeCountStackElement*, std::vector::RangeCountStackElement, std::allocator::RangeCountStackElement> > >; _Distance = int; _Tp = libmaus2::wavelet::WaveletTree::RangeCountStackElement; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::RangeCountStackElement> >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::RangeCountStackElement*, std::vector::RangeCountStackElement, std::allocator::RangeCountStackElement> > >’ changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/parallel/PosixSpinLock.hpp:23, from ./libmaus2/aio/StreamLock.hpp:21, from ./libmaus2/autoarray/GenericAlignedAllocation.hpp:23, from ./libmaus2/autoarray/AutoArray.hpp:26, from ./libmaus2/rank/ChooseCache.hpp:23, from ./libmaus2/rank/CodeBase.hpp:23, from ./libmaus2/rank/EncodeCache.hpp:23, from ./libmaus2/rank/ERankBase.hpp:24, from test/testRank.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘std::vector > libmaus2::wavelet::WaveletTree<_rank_type, _symbol_type>::rangeCountMax(uint64_t, uint64_t, uint64_t) const [with _rank_type = libmaus2::rank::ERank222B; _symbol_type = unsigned int]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::RangeCountStackElement*, std::vector::RangeCountStackElement, std::allocator::RangeCountStackElement> > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/parallel/PosixSpinLock.hpp:23, from ./libmaus2/aio/StreamLock.hpp:21, from ./libmaus2/autoarray/GenericAlignedAllocation.hpp:23, from ./libmaus2/autoarray/AutoArray.hpp:26, from ./libmaus2/rank/ChooseCache.hpp:23, from ./libmaus2/rank/CodeBase.hpp:23, from ./libmaus2/rank/EncodeCache.hpp:23, from ./libmaus2/rank/ERankBase.hpp:24, from test/testRank.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::RangeCountStackElement*, std::vector::RangeCountStackElement, std::allocator::RangeCountStackElement> > >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::RangeCountStackElement*, std::vector::RangeCountStackElement, std::allocator::RangeCountStackElement> > >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testRank test/testRank-testRank.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/arm-linux-gnueabi -lz libtool: link: arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testRank test/testRank-testRank.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/arm-linux-gnueabi -lz -fopenmp -pthread arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testToWaveletTreeBits-testToWaveletTreeBits.o `test -f 'test/testToWaveletTreeBits.cpp' || echo './'`test/testToWaveletTreeBits.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testToWaveletTreeBits test/testToWaveletTreeBits-testToWaveletTreeBits.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/arm-linux-gnueabi -lz libtool: link: arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testToWaveletTreeBits test/testToWaveletTreeBits-testToWaveletTreeBits.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/arm-linux-gnueabi -lz -fopenmp -pthread arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testWaveletExternal-testWaveletExternal.o `test -f 'test/testWaveletExternal.cpp' || echo './'`test/testWaveletExternal.cpp In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/serialize/Serialize.hpp:28, from ./libmaus2/bitio/BitVectorConcat.hpp:23, from ./libmaus2/wavelet/ExternalWaveletGenerator.hpp:23, from test/testWaveletExternal.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long int&}; _Tp = long long int; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/serialize/Serialize.hpp:28, from ./libmaus2/bitio/BitVectorConcat.hpp:23, from ./libmaus2/wavelet/ExternalWaveletGenerator.hpp:23, from test/testWaveletExternal.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In member function ‘virtual void libmaus2::huffman::HuffmanTreeLeaf::symbolVector(std::vector&) const’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/serialize/Serialize.hpp:28, from ./libmaus2/bitio/BitVectorConcat.hpp:23, from ./libmaus2/wavelet/ExternalWaveletGenerator.hpp:23, from test/testWaveletExternal.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/serialize/Serialize.hpp:28, from ./libmaus2/bitio/BitVectorConcat.hpp:23, from ./libmaus2/wavelet/ExternalWaveletGenerator.hpp:23, from test/testWaveletExternal.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In member function ‘virtual void libmaus2::huffman::HuffmanTreeLeaf::depthVector(std::vector&, uint64_t) const’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/serialize/Serialize.hpp:28, from ./libmaus2/bitio/BitVectorConcat.hpp:23, from ./libmaus2/wavelet/ExternalWaveletGenerator.hpp:23, from test/testWaveletExternal.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair, std::allocator >, long long unsigned int>}; _Tp = std::pair, long long unsigned int>; _Alloc = std::allocator, long long unsigned int> >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector, long long unsigned int> >::iterator’ {aka ‘__gnu_cxx::__normal_iterator, long long unsigned int>*, std::vector, long long unsigned int> > >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair, std::allocator >, long long unsigned int>}; _Tp = std::pair, long long unsigned int>; _Alloc = std::allocator, long long unsigned int> >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator, long long unsigned int>*, std::vector, long long unsigned int> > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/serialize/Serialize.hpp:28, from ./libmaus2/bitio/BitVectorConcat.hpp:23, from ./libmaus2/wavelet/ExternalWaveletGenerator.hpp:23, from test/testWaveletExternal.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In member function ‘uint64_t libmaus2::wavelet::ImpExternalWaveletGeneratorHuffmanParallel::createFinalStreamTemplate(ostream_type&, uint64_t) [with ostream_type = libmaus2::aio::OutputStream]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In function ‘void testImpExternalWaveletGenerator()’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In member function ‘uint64_t libmaus2::wavelet::ImpExternalWaveletGeneratorCompactHuffman::createFinalStream(stream_type&) [with stream_type = std::__cxx11::basic_ostringstream]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In member function ‘uint64_t libmaus2::wavelet::ImpExternalWaveletGeneratorCompactHuffmanParallel::createFinalStream(stream_type&, uint64_t) [with stream_type = libmaus2::aio::OutputStreamInstance]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/map:60, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/bitio/BitVectorConcat.hpp:23, from ./libmaus2/wavelet/ExternalWaveletGenerator.hpp:23, from test/testWaveletExternal.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = const libmaus2::huffman::HuffmanTreeLeaf*; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = const libmaus2::huffman::HuffmanTreeInnerNode*; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 In file included from /usr/arm-linux-gnueabi/include/c++/8/map:61, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/bitio/BitVectorConcat.hpp:23, from ./libmaus2/wavelet/ExternalWaveletGenerator.hpp:23, from test/testWaveletExternal.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = const libmaus2::huffman::HuffmanTreeInnerNode*; _Tp = long long unsigned int; _Compare = std::less; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h: In member function ‘virtual void libmaus2::huffman::HuffmanTreeInnerNode::toDot(std::ostream&) const’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabi/include/c++/8/map:60, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/bitio/BitVectorConcat.hpp:23, from ./libmaus2/wavelet/ExternalWaveletGenerator.hpp:23, from test/testWaveletExternal.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h: In member function ‘std::pair std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = long long int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:2149:5: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 In file included from /usr/arm-linux-gnueabi/include/c++/8/map:61, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/bitio/BitVectorConcat.hpp:23, from ./libmaus2/wavelet/ExternalWaveletGenerator.hpp:23, from test/testWaveletExternal.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](std::map<_Key, _Tp, _Compare, _Alloc>::key_type&&) [with _Key = long long int; _Tp = long long unsigned int; _Compare = std::less; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:518:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabi/include/c++/8/map:60, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/bitio/BitVectorConcat.hpp:23, from ./libmaus2/wavelet/ExternalWaveletGenerator.hpp:23, from test/testWaveletExternal.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h: In member function ‘std::pair std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = long long unsigned int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:2149:5: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair > >; _KeyOfValue = std::_Select1st > > >; _Compare = std::less; _Alloc = std::allocator > > >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type ‘std::_Rb_tree > >, std::_Select1st > > >, std::less, std::allocator > > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > > >’} changed in GCC 7.1 In file included from /usr/arm-linux-gnueabi/include/c++/8/map:61, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/bitio/BitVectorConcat.hpp:23, from ./libmaus2/wavelet/ExternalWaveletGenerator.hpp:23, from test/testWaveletExternal.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h: In member function ‘virtual std::ostream& libmaus2::util::MemTempFileContainer::getOutputTempFile(uint64_t)’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree > >, std::_Select1st > > >, std::less, std::allocator > > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > > >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h: In member function ‘virtual std::ostream& libmaus2::util::MemTempFileContainer::openOutputTempFile(uint64_t)’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree > >, std::_Select1st > > >, std::less, std::allocator > > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > > >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree > >, std::_Select1st > > >, std::less, std::allocator > > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > > >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabi/include/c++/8/map:60, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/bitio/BitVectorConcat.hpp:23, from ./libmaus2/wavelet/ExternalWaveletGenerator.hpp:23, from test/testWaveletExternal.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair > >; _KeyOfValue = std::_Select1st > > >; _Compare = std::less; _Alloc = std::allocator > > >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type ‘std::_Rb_tree > >, std::_Select1st > > >, std::less, std::allocator > > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > > >’} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/map:61, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/bitio/BitVectorConcat.hpp:23, from ./libmaus2/wavelet/ExternalWaveletGenerator.hpp:23, from test/testWaveletExternal.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr >; _Compare = std::less; _Alloc = std::allocator > > >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree > >, std::_Select1st > > >, std::less, std::allocator > > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > > >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h: In member function ‘virtual std::istream& libmaus2::util::MemTempFileContainer::openInputTempFile(uint64_t)’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree > >, std::_Select1st > > >, std::less, std::allocator > > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > > >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h: In constructor ‘libmaus2::wavelet::ImpExternalWaveletGeneratorHuffmanParallel::ImpExternalWaveletGeneratorHuffmanParallel(const libmaus2::huffman::HuffmanTreeNode*, libmaus2::util::TempFileNameGenerator&, uint64_t)’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from ./libmaus2/wavelet/ImpExternalWaveletGeneratorCompactHuffman.hpp:33, from test/testWaveletExternal.cpp:28: ./libmaus2/huffman/HuffmanTree.hpp: In constructor ‘libmaus2::huffman::HuffmanTree::HuffmanTree(iterator, uint64_t, bool, bool, bool) [with iterator = std::_Rb_tree_iterator >]’: ./libmaus2/huffman/HuffmanTree.hpp:643:4: note: parameter passing for argument of type ‘std::_Rb_tree_iterator >’ changed in GCC 7.1 HuffmanTree(iterator F, uint64_t const s, bool const sortbydepth = false, bool const rsetcode = false, bool const rdfsorder = false) ^~~~~~~~~~~ test/testWaveletExternal.cpp: In function ‘void testCompactHuffman()’: test/testWaveletExternal.cpp:307:64: note: parameter passing for argument of type ‘std::_Rb_tree_iterator >’ changed in GCC 7.1 libmaus2::huffman::HuffmanTree H(F.begin(),F.size(),false,true); ^ In file included from /usr/arm-linux-gnueabi/include/c++/8/map:61, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/bitio/BitVectorConcat.hpp:23, from ./libmaus2/wavelet/ExternalWaveletGenerator.hpp:23, from test/testWaveletExternal.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h: In function ‘void testCompactHuffmanPar()’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:518:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, test/testWaveletExternal.cpp:372:64: note: parameter passing for argument of type ‘std::_Rb_tree_iterator >’ changed in GCC 7.1 libmaus2::huffman::HuffmanTree H(F.begin(),F.size(),false,true); ^ In file included from /usr/arm-linux-gnueabi/include/c++/8/map:61, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/bitio/BitVectorConcat.hpp:23, from ./libmaus2/wavelet/ExternalWaveletGenerator.hpp:23, from test/testWaveletExternal.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:518:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:518:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:518:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:518:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h: In function ‘void testHuffmanWavelet()’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testWaveletExternal test/testWaveletExternal-testWaveletExternal.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/arm-linux-gnueabi -lz libtool: link: arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testWaveletExternal test/testWaveletExternal-testWaveletExternal.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/arm-linux-gnueabi -lz -fopenmp -pthread arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testTrie-testTrie.o `test -f 'test/testTrie.cpp' || echo './'`test/testTrie.cpp In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/bitio/BitIOOutput.hpp:24, from ./libmaus2/uint/uint.hpp:32, from ./libmaus2/util/SimpleHashMapKeyPrint.hpp:24, from ./libmaus2/util/SimpleHashMap.hpp:24, from ./libmaus2/trie/TrieState.hpp:24, from test/testTrie.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::trie::LinearTrieStateBase}; _Tp = libmaus2::trie::LinearTrieStateBase; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’} changed in GCC 7.1 In file included from /usr/arm-linux-gnueabi/include/c++/8/map:60, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/bitio/BitIOOutput.hpp:27, from ./libmaus2/uint/uint.hpp:32, from ./libmaus2/util/SimpleHashMapKeyPrint.hpp:24, from ./libmaus2/util/SimpleHashMap.hpp:24, from ./libmaus2/trie/TrieState.hpp:24, from test/testTrie.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple*&&>, std::tuple<>}; _Key = const libmaus2::trie::TrieState*; _Val = std::pair* const, long long unsigned int>; _KeyOfValue = std::_Select1st* const, long long unsigned int> >; _Compare = std::less*>; _Alloc = std::allocator* const, long long unsigned int> >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type ‘std::_Rb_tree*, std::pair* const, long long unsigned int>, std::_Select1st* const, long long unsigned int> >, std::less*>, std::allocator* const, long long unsigned int> > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator* const, long long unsigned int> >’} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/bitio/BitIOOutput.hpp:27, from ./libmaus2/uint/uint.hpp:32, from ./libmaus2/util/SimpleHashMapKeyPrint.hpp:24, from ./libmaus2/util/SimpleHashMap.hpp:24, from ./libmaus2/trie/TrieState.hpp:24, from test/testTrie.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/arm-linux-gnueabi/include/c++/8/map:61, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/bitio/BitIOOutput.hpp:27, from ./libmaus2/uint/uint.hpp:32, from ./libmaus2/util/SimpleHashMapKeyPrint.hpp:24, from ./libmaus2/util/SimpleHashMap.hpp:24, from ./libmaus2/trie/TrieState.hpp:24, from test/testTrie.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h: In member function ‘std::vector > libmaus2::trie::Trie<_char_type>::toLinearStateVector() const [with _char_type = char]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:518:8: note: parameter passing for argument of type ‘std::_Rb_tree*, std::pair* const, long long unsigned int>, std::_Select1st* const, long long unsigned int> >, std::less*>, std::allocator* const, long long unsigned int> > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator* const, long long unsigned int> >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/bitio/BitIOOutput.hpp:24, from ./libmaus2/uint/uint.hpp:32, from ./libmaus2/util/SimpleHashMapKeyPrint.hpp:24, from ./libmaus2/util/SimpleHashMap.hpp:24, from ./libmaus2/trie/TrieState.hpp:24, from test/testTrie.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/bitio/BitIOOutput.hpp:27, from ./libmaus2/uint/uint.hpp:32, from ./libmaus2/util/SimpleHashMapKeyPrint.hpp:24, from ./libmaus2/util/SimpleHashMap.hpp:24, from ./libmaus2/trie/TrieState.hpp:24, from test/testTrie.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/bitio/BitIOOutput.hpp:27, from ./libmaus2/uint/uint.hpp:32, from ./libmaus2/util/SimpleHashMapKeyPrint.hpp:24, from ./libmaus2/util/SimpleHashMap.hpp:24, from ./libmaus2/trie/TrieState.hpp:24, from test/testTrie.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/map:61, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/bitio/BitIOOutput.hpp:27, from ./libmaus2/uint/uint.hpp:32, from ./libmaus2/util/SimpleHashMapKeyPrint.hpp:24, from ./libmaus2/util/SimpleHashMap.hpp:24, from ./libmaus2/trie/TrieState.hpp:24, from test/testTrie.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h: In member function ‘typename libmaus2::trie::LinearHashTrie<_char_type, id_type>::unique_ptr_type libmaus2::trie::Trie<_char_type>::toLinearHashTrie() const [with id_type = unsigned int; _char_type = char]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:518:8: note: parameter passing for argument of type ‘std::_Rb_tree*, std::pair* const, long long unsigned int>, std::_Select1st* const, long long unsigned int> >, std::less*>, std::allocator* const, long long unsigned int> > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator* const, long long unsigned int> >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/bitio/BitIOOutput.hpp:24, from ./libmaus2/uint/uint.hpp:32, from ./libmaus2/util/SimpleHashMapKeyPrint.hpp:24, from ./libmaus2/util/SimpleHashMap.hpp:24, from ./libmaus2/trie/TrieState.hpp:24, from test/testTrie.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/bitio/BitIOOutput.hpp:24, from ./libmaus2/uint/uint.hpp:32, from ./libmaus2/util/SimpleHashMapKeyPrint.hpp:24, from ./libmaus2/util/SimpleHashMap.hpp:24, from ./libmaus2/trie/TrieState.hpp:24, from test/testTrie.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/bitio/BitIOOutput.hpp:27, from ./libmaus2/uint/uint.hpp:32, from ./libmaus2/util/SimpleHashMapKeyPrint.hpp:24, from ./libmaus2/util/SimpleHashMap.hpp:24, from ./libmaus2/trie/TrieState.hpp:24, from test/testTrie.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testTrie test/testTrie-testTrie.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/arm-linux-gnueabi -lz libtool: link: arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testTrie test/testTrie-testTrie.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/arm-linux-gnueabi -lz -fopenmp -pthread arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testbandedlcs-testbandedlcs.o `test -f 'test/testbandedlcs.cpp' || echo './'`test/testbandedlcs.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testbandedlcs test/testbandedlcs-testbandedlcs.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/arm-linux-gnueabi -lz libtool: link: arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testbandedlcs test/testbandedlcs-testbandedlcs.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/arm-linux-gnueabi -lz -fopenmp -pthread arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testbamwriter-testbamwriter.o `test -f 'test/testbamwriter.cpp' || echo './'`test/testbamwriter.cpp In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from ./libmaus2/bambam/BamWriter.hpp:22, from test/testbamwriter.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::ReadGroup&}; _Tp = libmaus2::bambam::ReadGroup; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::math::IntegerInterval&}; _Tp = libmaus2::math::IntegerInterval; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’} changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector > >’} changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from ./libmaus2/bambam/BamHeader.hpp:35, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from ./libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from ./libmaus2/bambam/BamWriter.hpp:22, from test/testbamwriter.cpp:19: ./libmaus2/hashing/ConstantStringHash.hpp: In constructor ‘libmaus2::hashing::ConstantStringHash::ConstantStringHash(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]’: ./libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 ConstantStringHash(iterator ita, iterator ite, uint64_t const maxn = 64*1024) ^~~~~~~~~~~~~~~~~~ ./libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from ./libmaus2/bambam/BamWriter.hpp:22, from test/testbamwriter.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::trie::LinearTrieStateBase}; _Tp = libmaus2::trie::LinearTrieStateBase; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from ./libmaus2/bambam/BamWriter.hpp:22, from test/testbamwriter.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from ./libmaus2/bambam/BamWriter.hpp:22, from test/testbamwriter.cpp:19: ./libmaus2/autoarray/AutoArray.hpp: In constructor ‘libmaus2::autoarray::AutoArray::AutoArray(uint64_t, bool) [with N = libmaus2::bambam::BamIndexBinChunk; libmaus2::autoarray::alloc_type atype = (libmaus2::autoarray::alloc_type)0; erase_type = libmaus2::autoarray::ArrayErase]’: ./libmaus2/autoarray/AutoArray.hpp:1801:5: warning: ‘’ may be used uninitialized in this function [-Wmaybe-uninitialized] array[i] = N(); ^~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from ./libmaus2/bambam/BamWriter.hpp:22, from test/testbamwriter.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In static member function ‘static std::vector libmaus2::bambam::BamHeader::getReadGroups(const string&)’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from ./libmaus2/bambam/BamWriter.hpp:22, from test/testbamwriter.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from ./libmaus2/bambam/BamWriter.hpp:22, from test/testbamwriter.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_val::SingleFileFragmentMergeHeapComparator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_val::SingleFileFragmentMergeHeapComparator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from ./libmaus2/bambam/BamWriter.hpp:22, from test/testbamwriter.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from ./libmaus2/bambam/BamWriter.hpp:22, from test/testbamwriter.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘typename libmaus2::trie::LinearHashTrie<_char_type, id_type>::unique_ptr_type libmaus2::trie::Trie<_char_type>::toLinearHashTrie() const [with id_type = unsigned int; _char_type = char]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from ./libmaus2/bambam/BamWriter.hpp:22, from test/testbamwriter.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from ./libmaus2/bambam/BamWriter.hpp:22, from test/testbamwriter.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from ./libmaus2/bambam/BamWriter.hpp:22, from test/testbamwriter.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from ./libmaus2/bambam/BamWriter.hpp:22, from test/testbamwriter.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::SingleFileFragmentMergeHeapComparator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from ./libmaus2/bambam/BamWriter.hpp:22, from test/testbamwriter.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from ./libmaus2/bambam/BamWriter.hpp:22, from test/testbamwriter.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::SingleFileFragmentMergeHeapComparator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from ./libmaus2/bambam/BamHeader.hpp:35, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from ./libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from ./libmaus2/bambam/BamWriter.hpp:22, from test/testbamwriter.cpp:19: ./libmaus2/hashing/ConstantStringHash.hpp: In member function ‘void libmaus2::bambam::BamHeader::initSetup()’: ./libmaus2/hashing/ConstantStringHash.hpp:86:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 shared_ptr_type s(new this_type(ita,ite,maxn)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from ./libmaus2/bambam/BamWriter.hpp:22, from test/testbamwriter.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In member function ‘void libmaus2::bambam::BamIndexGenerator::addBlock(const uint8_t*, uint64_t, uint64_t)’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testbamwriter test/testbamwriter-testbamwriter.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/arm-linux-gnueabi -lz libtool: link: arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testbamwriter test/testbamwriter-testbamwriter.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/arm-linux-gnueabi -lz -fopenmp -pthread arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testhashlcs-testhashlcs.o `test -f 'test/testhashlcs.cpp' || echo './'`test/testhashlcs.cpp In file included from test/testhashlcs.cpp:27: ./libmaus2/lcs/NP.hpp: In instantiation of ‘int64_t libmaus2::lcs::NP::npTemplate(iter_a, iter_a, iter_b, iter_b) [with iter_a = const unsigned char*; iter_b = const unsigned char*; bool self_check = true; int64_t = long long int]’: ./libmaus2/lcs/NP.hpp:116:53: required from ‘int64_t libmaus2::lcs::NP::np(iter_a, iter_a, iter_b, iter_b, bool) [with iter_a = const unsigned char*; iter_b = const unsigned char*; int64_t = long long int]’ ./libmaus2/lcs/NP.hpp:104:23: required from here ./libmaus2/lcs/NP.hpp:908:46: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘long long int’ [-Wsign-compare] if ( AlignmentTraceContainer::capacity() <= std::min(an,bn)+ed ) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ ./libmaus2/lcs/NP.hpp: In instantiation of ‘int64_t libmaus2::lcs::NP::npTemplate(iter_a, iter_a, iter_b, iter_b) [with iter_a = const unsigned char*; iter_b = const unsigned char*; bool self_check = false; int64_t = long long int]’: ./libmaus2/lcs/NP.hpp:118:54: required from ‘int64_t libmaus2::lcs::NP::np(iter_a, iter_a, iter_b, iter_b, bool) [with iter_a = const unsigned char*; iter_b = const unsigned char*; int64_t = long long int]’ ./libmaus2/lcs/NP.hpp:104:23: required from here ./libmaus2/lcs/NP.hpp:908:46: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘long long int’ [-Wsign-compare] ./libmaus2/lcs/NP.hpp: In instantiation of ‘int64_t libmaus2::lcs::NP::npTemplate(iter_a, iter_a, iter_b, iter_b) [with iter_a = __gnu_cxx::__normal_iterator >; iter_b = __gnu_cxx::__normal_iterator >; bool self_check = true; int64_t = long long int]’: ./libmaus2/lcs/NP.hpp:116:53: required from ‘int64_t libmaus2::lcs::NP::np(iter_a, iter_a, iter_b, iter_b, bool) [with iter_a = __gnu_cxx::__normal_iterator >; iter_b = __gnu_cxx::__normal_iterator >; int64_t = long long int]’ test/testhashlcs.cpp:159:44: required from here ./libmaus2/lcs/NP.hpp:908:46: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘long long int’ [-Wsign-compare] ./libmaus2/lcs/NP.hpp: In instantiation of ‘int64_t libmaus2::lcs::NP::npTemplate(iter_a, iter_a, iter_b, iter_b) [with iter_a = __gnu_cxx::__normal_iterator >; iter_b = __gnu_cxx::__normal_iterator >; bool self_check = false; int64_t = long long int]’: ./libmaus2/lcs/NP.hpp:118:54: required from ‘int64_t libmaus2::lcs::NP::np(iter_a, iter_a, iter_b, iter_b, bool) [with iter_a = __gnu_cxx::__normal_iterator >; iter_b = __gnu_cxx::__normal_iterator >; int64_t = long long int]’ test/testhashlcs.cpp:159:44: required from here ./libmaus2/lcs/NP.hpp:908:46: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘long long int’ [-Wsign-compare] ./libmaus2/lcs/NP.hpp: In instantiation of ‘int64_t libmaus2::lcs::NP::npTemplate(iter_a, iter_a, iter_b, iter_b) [with iter_a = __gnu_cxx::__normal_iterator >; iter_b = __gnu_cxx::__normal_iterator >; bool self_check = true; int64_t = long long int]’: ./libmaus2/lcs/NP.hpp:116:53: required from ‘int64_t libmaus2::lcs::NP::np(iter_a, iter_a, iter_b, iter_b, bool) [with iter_a = __gnu_cxx::__normal_iterator >; iter_b = __gnu_cxx::__normal_iterator >; int64_t = long long int]’ test/testhashlcs.cpp:182:57: required from here ./libmaus2/lcs/NP.hpp:908:46: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘long long int’ [-Wsign-compare] ./libmaus2/lcs/NP.hpp: In instantiation of ‘int64_t libmaus2::lcs::NP::npTemplate(iter_a, iter_a, iter_b, iter_b) [with iter_a = __gnu_cxx::__normal_iterator >; iter_b = __gnu_cxx::__normal_iterator >; bool self_check = false; int64_t = long long int]’: ./libmaus2/lcs/NP.hpp:118:54: required from ‘int64_t libmaus2::lcs::NP::np(iter_a, iter_a, iter_b, iter_b, bool) [with iter_a = __gnu_cxx::__normal_iterator >; iter_b = __gnu_cxx::__normal_iterator >; int64_t = long long int]’ test/testhashlcs.cpp:182:57: required from here ./libmaus2/lcs/NP.hpp:908:46: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘long long int’ [-Wsign-compare] ./libmaus2/lcs/NP.hpp: In instantiation of ‘int64_t libmaus2::lcs::NP::npTemplate(iter_a, iter_a, iter_b, iter_b) [with iter_a = const char*; iter_b = const char*; bool self_check = true; int64_t = long long int]’: ./libmaus2/lcs/NP.hpp:116:53: required from ‘int64_t libmaus2::lcs::NP::np(iter_a, iter_a, iter_b, iter_b, bool) [with iter_a = const char*; iter_b = const char*; int64_t = long long int]’ test/testhashlcs.cpp:201:26: required from here ./libmaus2/lcs/NP.hpp:908:46: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘long long int’ [-Wsign-compare] ./libmaus2/lcs/NP.hpp: In instantiation of ‘int64_t libmaus2::lcs::NP::npTemplate(iter_a, iter_a, iter_b, iter_b) [with iter_a = const char*; iter_b = const char*; bool self_check = false; int64_t = long long int]’: ./libmaus2/lcs/NP.hpp:118:54: required from ‘int64_t libmaus2::lcs::NP::np(iter_a, iter_a, iter_b, iter_b, bool) [with iter_a = const char*; iter_b = const char*; int64_t = long long int]’ test/testhashlcs.cpp:201:26: required from here ./libmaus2/lcs/NP.hpp:908:46: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘long long int’ [-Wsign-compare] In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/parallel/PosixSpinLock.hpp:23, from ./libmaus2/aio/StreamLock.hpp:21, from ./libmaus2/autoarray/GenericAlignedAllocation.hpp:23, from ./libmaus2/autoarray/AutoArray.hpp:26, from ./libmaus2/lcs/HashContainer2.hpp:24, from test/testhashlcs.cpp:21: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/parallel/PosixSpinLock.hpp:23, from ./libmaus2/aio/StreamLock.hpp:21, from ./libmaus2/autoarray/GenericAlignedAllocation.hpp:23, from ./libmaus2/autoarray/AutoArray.hpp:26, from ./libmaus2/lcs/HashContainer2.hpp:24, from test/testhashlcs.cpp:21: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In static member function ‘static void libmaus2::math::Binom::fillBinomialVector(uint64_t, uint64_t, std::vector&)’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from ./libmaus2/math/BernoulliNumber.hpp:21, from test/testhashlcs.cpp:77: ./libmaus2/math/binom.hpp:103:4: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 } ^ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/parallel/PosixSpinLock.hpp:23, from ./libmaus2/aio/StreamLock.hpp:21, from ./libmaus2/autoarray/GenericAlignedAllocation.hpp:23, from ./libmaus2/autoarray/AutoArray.hpp:26, from ./libmaus2/lcs/HashContainer2.hpp:24, from test/testhashlcs.cpp:21: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In static member function ‘static std::vector libmaus2::util::LongestIncreasingSubsequence::longestIncreasingSubsequence(iterator_type, uint64_t, const comparator_type&) [with iterator_type = __gnu_cxx::__normal_iterator >; comparator_type = libmaus2::lcs::OffsetElementOffsetComparator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from ./libmaus2/lcs/HashContainer2.hpp:33, from test/testhashlcs.cpp:21: ./libmaus2/util/LongestIncreasingSubsequence.hpp:123:4: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 } ^ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/parallel/PosixSpinLock.hpp:23, from ./libmaus2/aio/StreamLock.hpp:21, from ./libmaus2/autoarray/GenericAlignedAllocation.hpp:23, from ./libmaus2/autoarray/AutoArray.hpp:26, from ./libmaus2/lcs/HashContainer2.hpp:24, from test/testhashlcs.cpp:21: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::math::Rational}; _Tp = libmaus2::math::Rational<>; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector > >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {libmaus2::math::Rational}; _Tp = libmaus2::math::Rational<>; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/parallel/PosixSpinLock.hpp:23, from ./libmaus2/aio/StreamLock.hpp:21, from ./libmaus2/autoarray/GenericAlignedAllocation.hpp:23, from ./libmaus2/autoarray/AutoArray.hpp:26, from ./libmaus2/lcs/HashContainer2.hpp:24, from test/testhashlcs.cpp:21: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In static member function ‘static libmaus2::math::Rational<_N> libmaus2::math::BernoulliNumber<_number_type>::B(unsigned int) [with _number_type = long long int]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/lcs/HashContainer2.hpp:24, from test/testhashlcs.cpp:21: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/lcs/HashContainer2.hpp:24, from test/testhashlcs.cpp:21: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/lcs/HashContainer2.hpp:24, from test/testhashlcs.cpp:21: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In static member function ‘static libmaus2::util::LongestIncreasingSubsequenceExtendedResult::unique_ptr_type libmaus2::util::LongestIncreasingSubsequence::longestIncreasingSubsequenceExtended(iterator_type, uint64_t, const comparator_type&) [with iterator_type = const int*; comparator_type = std::less]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testhashlcs test/testhashlcs-testhashlcs.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/arm-linux-gnueabi -lz libtool: link: arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testhashlcs test/testhashlcs-testhashlcs.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/arm-linux-gnueabi -lz -fopenmp -pthread arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testarraydecode-testarraydecode.o `test -f 'test/testarraydecode.cpp' || echo './'`test/testarraydecode.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testarraydecode test/testarraydecode-testarraydecode.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/arm-linux-gnueabi -lz libtool: link: arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testarraydecode test/testarraydecode-testarraydecode.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/arm-linux-gnueabi -lz -fopenmp -pthread arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testsnappy-testsnappy.o `test -f 'test/testsnappy.cpp' || echo './'`test/testsnappy.cpp In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/GetFileSize.hpp:25, from ./libmaus2/aio/SynchronousGenericInput.hpp:23, from test/testsnappy.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testsnappy test/testsnappy-testsnappy.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/arm-linux-gnueabi -lz libtool: link: arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testsnappy test/testsnappy-testsnappy.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/arm-linux-gnueabi -lz -fopenmp -pthread arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testsnappyconcat-testsnappyconcat.o `test -f 'test/testsnappyconcat.cpp' || echo './'`test/testsnappyconcat.cpp In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/parallel/PosixSpinLock.hpp:23, from ./libmaus2/aio/StreamLock.hpp:21, from ./libmaus2/autoarray/GenericAlignedAllocation.hpp:23, from ./libmaus2/autoarray/AutoArray.hpp:26, from ./libmaus2/lz/CompressorObject.hpp:23, from ./libmaus2/lz/SnappyCompressorObject.hpp:22, from ./libmaus2/lz/SnappyCompressorObjectFactory.hpp:22, from test/testsnappyconcat.cpp:22: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::lz::SimpleCompressedConcatInputStreamFragment > >&}; _Tp = libmaus2::lz::SimpleCompressedConcatInputStreamFragment >; _Alloc = std::allocator > >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector >, std::allocator > > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/parallel/PosixSpinLock.hpp:23, from ./libmaus2/aio/StreamLock.hpp:21, from ./libmaus2/autoarray/GenericAlignedAllocation.hpp:23, from ./libmaus2/autoarray/AutoArray.hpp:26, from ./libmaus2/lz/CompressorObject.hpp:23, from ./libmaus2/lz/SnappyCompressorObject.hpp:22, from ./libmaus2/lz/SnappyCompressorObjectFactory.hpp:22, from test/testsnappyconcat.cpp:22: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In function ‘void testConcat(const string&, const string&)’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testsnappyconcat test/testsnappyconcat-testsnappyconcat.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/arm-linux-gnueabi -lz libtool: link: arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testsnappyconcat test/testsnappyconcat-testsnappyconcat.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/arm-linux-gnueabi -lz -fopenmp -pthread arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testgunzip-testgunzip.o `test -f 'test/testgunzip.cpp' || echo './'`test/testgunzip.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testgunzip test/testgunzip-testgunzip.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/arm-linux-gnueabi -lz libtool: link: arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testgunzip test/testgunzip-testgunzip.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/arm-linux-gnueabi -lz -fopenmp -pthread arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testregex-testregex.o `test -f 'test/testregex.cpp' || echo './'`test/testregex.cpp In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/regex/PosixRegex.hpp:31, from test/testregex.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In function ‘void testRegex()’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testregex test/testregex-testregex.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/arm-linux-gnueabi -lz libtool: link: arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testregex test/testregex-testregex.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/arm-linux-gnueabi -lz -fopenmp -pthread arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testhashcollisions-testhashcollisions.o `test -f 'test/testhashcollisions.cpp' || echo './'`test/testhashcollisions.cpp In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from test/testhashcollisions.cpp:23: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from test/testhashcollisions.cpp:23: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from test/testhashcollisions.cpp:23: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void testHashCollisions()’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testhashcollisions test/testhashcollisions-testhashcollisions.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/arm-linux-gnueabi -lz libtool: link: arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testhashcollisions test/testhashcollisions-testhashcollisions.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/arm-linux-gnueabi -lz -fopenmp -pthread arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testsimplebloomcollisions-testsimplebloomcollisions.o `test -f 'test/testsimplebloomcollisions.cpp' || echo './'`test/testsimplebloomcollisions.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testsimplebloomcollisions test/testsimplebloomcollisions-testsimplebloomcollisions.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/arm-linux-gnueabi -lz libtool: link: arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testsimplebloomcollisions test/testsimplebloomcollisions-testsimplebloomcollisions.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/arm-linux-gnueabi -lz -fopenmp -pthread arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testsimplehash-testsimplehash.o `test -f 'test/testsimplehash.cpp' || echo './'`test/testsimplehash.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testsimplehash test/testsimplehash-testsimplehash.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/arm-linux-gnueabi -lz libtool: link: arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testsimplehash test/testsimplehash-testsimplehash.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/arm-linux-gnueabi -lz -fopenmp -pthread arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testsimplecountinghash-testsimplecountinghash.o `test -f 'test/testsimplecountinghash.cpp' || echo './'`test/testsimplecountinghash.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testsimplecountinghash test/testsimplecountinghash-testsimplecountinghash.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/arm-linux-gnueabi -lz libtool: link: arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testsimplecountinghash test/testsimplecountinghash-testsimplecountinghash.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/arm-linux-gnueabi -lz -fopenmp -pthread arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testsyncreorderset-testsyncreorderset.o `test -f 'test/testsyncreorderset.cpp' || echo './'`test/testsyncreorderset.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testsyncreorderset test/testsyncreorderset-testsyncreorderset.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/arm-linux-gnueabi -lz libtool: link: arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testsyncreorderset test/testsyncreorderset-testsyncreorderset.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/arm-linux-gnueabi -lz -fopenmp -pthread arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testcachealignedalloc-testcachealignedalloc.o `test -f 'test/testcachealignedalloc.cpp' || echo './'`test/testcachealignedalloc.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testcachealignedalloc test/testcachealignedalloc-testcachealignedalloc.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/arm-linux-gnueabi -lz libtool: link: arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testcachealignedalloc test/testcachealignedalloc-testcachealignedalloc.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/arm-linux-gnueabi -lz -fopenmp -pthread arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testblocksynchronous-testblocksynchronous.o `test -f 'test/testblocksynchronous.cpp' || echo './'`test/testblocksynchronous.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testblocksynchronous test/testblocksynchronous-testblocksynchronous.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/arm-linux-gnueabi -lz libtool: link: arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testblocksynchronous test/testblocksynchronous-testblocksynchronous.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/arm-linux-gnueabi -lz -fopenmp -pthread arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testsyncfastreaderbase-testsyncfastreaderbase.o `test -f 'test/testsyncfastreaderbase.cpp' || echo './'`test/testsyncfastreaderbase.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testsyncfastreaderbase test/testsyncfastreaderbase-testsyncfastreaderbase.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/arm-linux-gnueabi -lz libtool: link: arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testsyncfastreaderbase test/testsyncfastreaderbase-testsyncfastreaderbase.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/arm-linux-gnueabi -lz -fopenmp -pthread arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testdl-testdl.o `test -f 'test/testdl.cpp' || echo './'`test/testdl.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testdl test/testdl-testdl.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -ldl -lrt -L/usr/lib/arm-linux-gnueabi -lz libtool: link: arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testdl test/testdl-testdl.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -ldl -lrt -L/usr/lib/arm-linux-gnueabi -lz -fopenmp -pthread arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testdifenc-testdifenc.o `test -f 'test/testdifenc.cpp' || echo './'`test/testdifenc.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testdifenc test/testdifenc-testdifenc.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/arm-linux-gnueabi -lz libtool: link: arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testdifenc test/testdifenc-testdifenc.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/arm-linux-gnueabi -lz -fopenmp -pthread arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testbwtmergeinternal-testbwtmergeinternal.o `test -f 'test/testbwtmergeinternal.cpp' || echo './'`test/testbwtmergeinternal.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testbwtmergeinternal test/testbwtmergeinternal-testbwtmergeinternal.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/arm-linux-gnueabi -lz libtool: link: arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testbwtmergeinternal test/testbwtmergeinternal-testbwtmergeinternal.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/arm-linux-gnueabi -lz -fopenmp -pthread arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testfastarewrite-testfastarewrite.o `test -f 'test/testfastarewrite.cpp' || echo './'`test/testfastarewrite.cpp In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/ArgInfo.hpp:25, from test/testfastarewrite.cpp:3: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::fastx::FastAReaderTemplate::RewriteInfo&}; _Tp = libmaus2::fastx::FastAReaderTemplate::RewriteInfo; _Alloc = std::allocator::RewriteInfo>]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::RewriteInfo, std::allocator::RewriteInfo> >::iterator’ {aka ‘__gnu_cxx::__normal_iterator::RewriteInfo*, std::vector::RewriteInfo, std::allocator::RewriteInfo> > >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/ArgInfo.hpp:25, from test/testfastarewrite.cpp:3: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In static member function ‘static std::vector::RewriteInfo> libmaus2::fastx::FastAReaderTemplate<_reader_base_type>::rewriteFilesToBuffer(const std::vector >&, buffer_type&) [with buffer_type = libmaus2::aio::SynchronousGenericOutput; _reader_base_type = libmaus2::aio::SynchronousFastReaderBase]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::RewriteInfo*, std::vector::RewriteInfo, std::allocator::RewriteInfo> > >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testfastarewrite test/testfastarewrite-testfastarewrite.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/arm-linux-gnueabi -lz libtool: link: arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testfastarewrite test/testfastarewrite-testfastarewrite.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/arm-linux-gnueabi -lz -fopenmp -pthread arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testfastarecode-testfastarecode.o `test -f 'test/testfastarecode.cpp' || echo './'`test/testfastarecode.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testfastarecode test/testfastarecode-testfastarecode.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/arm-linux-gnueabi -lz libtool: link: arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testfastarecode test/testfastarecode-testfastarecode.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/arm-linux-gnueabi -lz -fopenmp -pthread arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testbamtofastq-testbamtofastq.o `test -f 'test/testbamtofastq.cpp' || echo './'`test/testbamtofastq.cpp In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testbamtofastq.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::ReadGroup&}; _Tp = libmaus2::bambam::ReadGroup; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testbamtofastq.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testbamtofastq.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::pair&}; _Tp = std::pair; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector > >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector > >’} changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from ./libmaus2/bambam/BamHeader.hpp:35, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testbamtofastq.cpp:19: ./libmaus2/hashing/ConstantStringHash.hpp: In constructor ‘libmaus2::hashing::ConstantStringHash::ConstantStringHash(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]’: ./libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 ConstantStringHash(iterator ita, iterator ite, uint64_t const maxn = 64*1024) ^~~~~~~~~~~~~~~~~~ ./libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testbamtofastq.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::BamAlignmentDecoderInfo}; _Tp = libmaus2::bambam::BamAlignmentDecoderInfo; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {libmaus2::bambam::BamAlignmentDecoderInfo}; _Tp = libmaus2::bambam::BamAlignmentDecoderInfo; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/map:60, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testbamtofastq.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h: In member function ‘void std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_erase_aux(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator) [with _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:2489:5: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testbamtofastq.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_comp_val >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/map:60, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testbamtofastq.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/map:61, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testbamtofastq.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h: In member function ‘virtual void libmaus2::parallel::SimpleThreadPool::setTaskId(uint64_t, uint64_t)’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testbamtofastq.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::trie::LinearTrieStateBase}; _Tp = libmaus2::trie::LinearTrieStateBase; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testbamtofastq.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/arm-linux-gnueabi/include/c++/8/map:60, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testbamtofastq.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/map:61, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testbamtofastq.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::set; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testbamtofastq.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testbamtofastq.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In static member function ‘static std::vector libmaus2::bambam::BamHeader::getReadGroups(const string&)’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/map:61, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testbamtofastq.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h: In member function ‘virtual void* libmaus2::parallel::SimpleThreadPoolThread::run()’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testbamtofastq.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 __move_median_to_first(_Iterator __result,_Iterator __a, _Iterator __b, ^~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Val_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testbamtofastq.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::Chromosome&}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testbamtofastq.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_comp_val]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testbamtofastq.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In member function ‘void libmaus2::bambam::BamMergeTemplate<_heap_comparator_type, _sort_check_type>::init() [with _heap_comparator_type = libmaus2::bambam::BamMergeCoordinateHeapComparator; _sort_check_type = libmaus2::bambam::BamCatHeader::IsCoordinateSorted]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testbamtofastq.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bitbtree::BitBTree<8, 8>::VectorConstructionTuple}; _Tp = libmaus2::bitbtree::BitBTree<8, 8>::VectorConstructionTuple; _Alloc = std::allocator::VectorConstructionTuple>]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::VectorConstructionTuple, std::allocator::VectorConstructionTuple> >::iterator’ {aka ‘__gnu_cxx::__normal_iterator::VectorConstructionTuple*, std::vector::VectorConstructionTuple, std::allocator::VectorConstructionTuple> > >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {libmaus2::bitbtree::BitBTree<8, 8>::VectorConstructionTuple}; _Tp = libmaus2::bitbtree::BitBTree<8, 8>::VectorConstructionTuple; _Alloc = std::allocator::VectorConstructionTuple>]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::VectorConstructionTuple*, std::vector::VectorConstructionTuple, std::allocator::VectorConstructionTuple> > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testbamtofastq.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 __move_median_to_first(_Iterator __result,_Iterator __a, _Iterator __b, ^~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘std::pair std::__equal_range(_ForwardIterator, _ForwardIterator, const _Tp&, _CompareItTp, _CompareTpIt) [with _ForwardIterator = __gnu_cxx::__normal_iterator >; _Tp = libmaus2::bambam::Chromosome; _CompareItTp = __gnu_cxx::__ops::_Iter_comp_val; _CompareTpIt = __gnu_cxx::__ops::_Val_comp_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:2124:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __equal_range(_ForwardIterator __first, _ForwardIterator __last, ^~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:2124:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In constructor ‘libmaus2::bambam::ChromosomeVectorMerge::ChromosomeVectorMerge(const std::vector*>&, bool)’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:2228:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 return std::__equal_range(__first, __last, __val, ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__iter_comp_val(__comp), ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__val_comp_iter(__comp)); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:2228:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 return std::__equal_range(__first, __last, __val, ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__iter_comp_val(__comp), ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__val_comp_iter(__comp)); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/map:61, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testbamtofastq.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabi/include/c++/8/map:60, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testbamtofastq.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testbamtofastq.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testbamtofastq.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:2228:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 return std::__equal_range(__first, __last, __val, ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__iter_comp_val(__comp), ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__val_comp_iter(__comp)); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testbamtofastq.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testbamtofastq.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 std::__move_median_to_first(__first, __first + 1, __mid, __last - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In constructor ‘libmaus2::bambam::ReadGroupVectorMerge::ReadGroupVectorMerge(const std::vector*>&)’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testbamtofastq.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testbamtofastq.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testbamtofastq.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In member function ‘void libmaus2::trie::LinearHashTrie<_char_type, _id_type>::fillDepthParent() [with _char_type = char; _id_type = unsigned int]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testbamtofastq.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘typename libmaus2::trie::LinearHashTrie<_char_type, id_type>::unique_ptr_type libmaus2::trie::Trie<_char_type>::toLinearHashTrie() const [with id_type = unsigned int; _char_type = char]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testbamtofastq.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testbamtofastq.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testbamtofastq.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 __heap_select(_RandomAccessIterator __first, ^~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 std::__move_median_to_first(__first, __first + 1, __mid, __last - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1933:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 std::__heap_select(__first, __middle, __last, __comp); ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testbamtofastq.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In member function ‘std::vector > libmaus2::bambam::BamIndex::reg2chunks(uint64_t, uint64_t, uint64_t) const’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testbamtofastq.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ./libmaus2/bambam/BamHeader.hpp:35, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testbamtofastq.cpp:19: ./libmaus2/hashing/ConstantStringHash.hpp: In member function ‘void libmaus2::bambam::BamHeader::initSetup()’: ./libmaus2/hashing/ConstantStringHash.hpp:86:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 shared_ptr_type s(new this_type(ita,ite,maxn)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -ldl -Wl,-z,relro -o testbamtofastq test/testbamtofastq-testbamtofastq.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/arm-linux-gnueabi -lz libtool: link: arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testbamtofastq test/testbamtofastq-testbamtofastq.o -ldl ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/arm-linux-gnueabi -lz -fopenmp -pthread arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testbamrange-testbamrange.o `test -f 'test/testbamrange.cpp' || echo './'`test/testbamrange.cpp In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from ./libmaus2/bambam/BamRangeDecoder.hpp:22, from test/testbamrange.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::ReadGroup&}; _Tp = libmaus2::bambam::ReadGroup; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::pair&}; _Tp = std::pair; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector > >’} changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 In file included from ./libmaus2/bambam/BamHeader.hpp:35, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from ./libmaus2/bambam/BamRangeDecoder.hpp:22, from test/testbamrange.cpp:20: ./libmaus2/hashing/ConstantStringHash.hpp: In constructor ‘libmaus2::hashing::ConstantStringHash::ConstantStringHash(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]’: ./libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 ConstantStringHash(iterator ita, iterator ite, uint64_t const maxn = 64*1024) ^~~~~~~~~~~~~~~~~~ ./libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from ./libmaus2/bambam/BamRangeDecoder.hpp:22, from test/testbamrange.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::trie::LinearTrieStateBase}; _Tp = libmaus2::trie::LinearTrieStateBase; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from ./libmaus2/bambam/BamRangeDecoder.hpp:22, from test/testbamrange.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from ./libmaus2/bambam/BamRangeDecoder.hpp:22, from test/testbamrange.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In static member function ‘static std::vector libmaus2::bambam::BamHeader::getReadGroups(const string&)’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from ./libmaus2/bambam/BamRangeDecoder.hpp:22, from test/testbamrange.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 __move_median_to_first(_Iterator __result,_Iterator __a, _Iterator __b, ^~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Val_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 In file included from /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from ./libmaus2/bambam/BamRangeDecoder.hpp:22, from test/testbamrange.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from ./libmaus2/bambam/BamRangeDecoder.hpp:22, from test/testbamrange.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from ./libmaus2/bambam/BamRangeDecoder.hpp:22, from test/testbamrange.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘typename libmaus2::trie::LinearHashTrie<_char_type, id_type>::unique_ptr_type libmaus2::trie::Trie<_char_type>::toLinearHashTrie() const [with id_type = unsigned int; _char_type = char]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from ./libmaus2/bambam/BamRangeDecoder.hpp:22, from test/testbamrange.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from ./libmaus2/bambam/BamRangeDecoder.hpp:22, from test/testbamrange.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from ./libmaus2/bambam/BamRangeDecoder.hpp:22, from test/testbamrange.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from ./libmaus2/bambam/BamRangeDecoder.hpp:22, from test/testbamrange.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 __heap_select(_RandomAccessIterator __first, ^~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 std::__move_median_to_first(__first, __first + 1, __mid, __last - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1933:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 std::__heap_select(__first, __middle, __last, __comp); ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from ./libmaus2/bambam/BamRangeDecoder.hpp:22, from test/testbamrange.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In member function ‘std::vector > libmaus2::bambam::BamIndex::reg2chunks(uint64_t, uint64_t, uint64_t) const’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from ./libmaus2/bambam/BamRangeDecoder.hpp:22, from test/testbamrange.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ./libmaus2/bambam/BamHeader.hpp:35, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from ./libmaus2/bambam/BamRangeDecoder.hpp:22, from test/testbamrange.cpp:20: ./libmaus2/hashing/ConstantStringHash.hpp: In member function ‘void libmaus2::bambam::BamHeader::initSetup()’: ./libmaus2/hashing/ConstantStringHash.hpp:86:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 shared_ptr_type s(new this_type(ita,ite,maxn)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from ./libmaus2/bambam/BamRangeDecoder.hpp:22, from test/testbamrange.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void libmaus2::bambam::BamHeader::init(stream_type&) [with stream_type = libmaus2::lz::BgzfInflateStream]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testbamrange test/testbamrange-testbamrange.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/arm-linux-gnueabi -lz libtool: link: arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testbamrange test/testbamrange-testbamrange.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/arm-linux-gnueabi -lz -fopenmp -pthread arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testbamdamage-testbamdamage.o `test -f 'test/testbamdamage.cpp' || echo './'`test/testbamdamage.cpp In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/parallel/PosixSpinLock.hpp:23, from ./libmaus2/aio/StreamLock.hpp:21, from ./libmaus2/autoarray/GenericAlignedAllocation.hpp:23, from ./libmaus2/autoarray/AutoArray.hpp:26, from ./libmaus2/lz/StreamWrapperBuffer.hpp:23, from ./libmaus2/lz/StreamWrapper.hpp:22, from ./libmaus2/lz/GzipHeader.hpp:22, from ./libmaus2/lz/GzipSingleStream.hpp:22, from ./libmaus2/lz/GzipStream.hpp:22, from ./libmaus2/lz/GzipStreamWrapper.hpp:22, from ./libmaus2/lz/BufferedGzipStream.hpp:22, from test/testbamdamage.cpp:1: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::ReadGroup&}; _Tp = libmaus2::bambam::ReadGroup; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 In file included from ./libmaus2/bambam/BamHeader.hpp:35, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from test/testbamdamage.cpp:3: ./libmaus2/hashing/ConstantStringHash.hpp: In constructor ‘libmaus2::hashing::ConstantStringHash::ConstantStringHash(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]’: ./libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 ConstantStringHash(iterator ita, iterator ite, uint64_t const maxn = 64*1024) ^~~~~~~~~~~~~~~~~~ ./libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/parallel/PosixSpinLock.hpp:23, from ./libmaus2/aio/StreamLock.hpp:21, from ./libmaus2/autoarray/GenericAlignedAllocation.hpp:23, from ./libmaus2/autoarray/AutoArray.hpp:26, from ./libmaus2/lz/StreamWrapperBuffer.hpp:23, from ./libmaus2/lz/StreamWrapper.hpp:22, from ./libmaus2/lz/GzipHeader.hpp:22, from ./libmaus2/lz/GzipSingleStream.hpp:22, from ./libmaus2/lz/GzipStream.hpp:22, from ./libmaus2/lz/GzipStreamWrapper.hpp:22, from ./libmaus2/lz/BufferedGzipStream.hpp:22, from test/testbamdamage.cpp:1: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::trie::LinearTrieStateBase}; _Tp = libmaus2::trie::LinearTrieStateBase; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/lz/StreamWrapperBuffer.hpp:23, from ./libmaus2/lz/StreamWrapper.hpp:22, from ./libmaus2/lz/GzipHeader.hpp:22, from ./libmaus2/lz/GzipSingleStream.hpp:22, from ./libmaus2/lz/GzipStream.hpp:22, from ./libmaus2/lz/GzipStreamWrapper.hpp:22, from ./libmaus2/lz/BufferedGzipStream.hpp:22, from test/testbamdamage.cpp:1: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/parallel/PosixSpinLock.hpp:23, from ./libmaus2/aio/StreamLock.hpp:21, from ./libmaus2/autoarray/GenericAlignedAllocation.hpp:23, from ./libmaus2/autoarray/AutoArray.hpp:26, from ./libmaus2/lz/StreamWrapperBuffer.hpp:23, from ./libmaus2/lz/StreamWrapper.hpp:22, from ./libmaus2/lz/GzipHeader.hpp:22, from ./libmaus2/lz/GzipSingleStream.hpp:22, from ./libmaus2/lz/GzipStream.hpp:22, from ./libmaus2/lz/GzipStreamWrapper.hpp:22, from ./libmaus2/lz/BufferedGzipStream.hpp:22, from test/testbamdamage.cpp:1: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In static member function ‘static std::vector libmaus2::bambam::BamHeader::getReadGroups(const string&)’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/lz/StreamWrapperBuffer.hpp:23, from ./libmaus2/lz/StreamWrapper.hpp:22, from ./libmaus2/lz/GzipHeader.hpp:22, from ./libmaus2/lz/GzipSingleStream.hpp:22, from ./libmaus2/lz/GzipStream.hpp:22, from ./libmaus2/lz/GzipStreamWrapper.hpp:22, from ./libmaus2/lz/BufferedGzipStream.hpp:22, from test/testbamdamage.cpp:1: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/lz/StreamWrapperBuffer.hpp:23, from ./libmaus2/lz/StreamWrapper.hpp:22, from ./libmaus2/lz/GzipHeader.hpp:22, from ./libmaus2/lz/GzipSingleStream.hpp:22, from ./libmaus2/lz/GzipStream.hpp:22, from ./libmaus2/lz/GzipStreamWrapper.hpp:22, from ./libmaus2/lz/BufferedGzipStream.hpp:22, from test/testbamdamage.cpp:1: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/parallel/PosixSpinLock.hpp:23, from ./libmaus2/aio/StreamLock.hpp:21, from ./libmaus2/autoarray/GenericAlignedAllocation.hpp:23, from ./libmaus2/autoarray/AutoArray.hpp:26, from ./libmaus2/lz/StreamWrapperBuffer.hpp:23, from ./libmaus2/lz/StreamWrapper.hpp:22, from ./libmaus2/lz/GzipHeader.hpp:22, from ./libmaus2/lz/GzipSingleStream.hpp:22, from ./libmaus2/lz/GzipStream.hpp:22, from ./libmaus2/lz/GzipStreamWrapper.hpp:22, from ./libmaus2/lz/BufferedGzipStream.hpp:22, from test/testbamdamage.cpp:1: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘typename libmaus2::trie::LinearHashTrie<_char_type, id_type>::unique_ptr_type libmaus2::trie::Trie<_char_type>::toLinearHashTrie() const [with id_type = unsigned int; _char_type = char]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/parallel/PosixSpinLock.hpp:23, from ./libmaus2/aio/StreamLock.hpp:21, from ./libmaus2/autoarray/GenericAlignedAllocation.hpp:23, from ./libmaus2/autoarray/AutoArray.hpp:26, from ./libmaus2/lz/StreamWrapperBuffer.hpp:23, from ./libmaus2/lz/StreamWrapper.hpp:22, from ./libmaus2/lz/GzipHeader.hpp:22, from ./libmaus2/lz/GzipSingleStream.hpp:22, from ./libmaus2/lz/GzipStream.hpp:22, from ./libmaus2/lz/GzipStreamWrapper.hpp:22, from ./libmaus2/lz/BufferedGzipStream.hpp:22, from test/testbamdamage.cpp:1: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/lz/StreamWrapperBuffer.hpp:23, from ./libmaus2/lz/StreamWrapper.hpp:22, from ./libmaus2/lz/GzipHeader.hpp:22, from ./libmaus2/lz/GzipSingleStream.hpp:22, from ./libmaus2/lz/GzipStream.hpp:22, from ./libmaus2/lz/GzipStreamWrapper.hpp:22, from ./libmaus2/lz/BufferedGzipStream.hpp:22, from test/testbamdamage.cpp:1: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ./libmaus2/bambam/BamHeader.hpp:35, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from test/testbamdamage.cpp:3: ./libmaus2/hashing/ConstantStringHash.hpp: In member function ‘void libmaus2::bambam::BamHeader::initSetup()’: ./libmaus2/hashing/ConstantStringHash.hpp:86:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 shared_ptr_type s(new this_type(ita,ite,maxn)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/parallel/PosixSpinLock.hpp:23, from ./libmaus2/aio/StreamLock.hpp:21, from ./libmaus2/autoarray/GenericAlignedAllocation.hpp:23, from ./libmaus2/autoarray/AutoArray.hpp:26, from ./libmaus2/lz/StreamWrapperBuffer.hpp:23, from ./libmaus2/lz/StreamWrapper.hpp:22, from ./libmaus2/lz/GzipHeader.hpp:22, from ./libmaus2/lz/GzipSingleStream.hpp:22, from ./libmaus2/lz/GzipStream.hpp:22, from ./libmaus2/lz/GzipStreamWrapper.hpp:22, from ./libmaus2/lz/BufferedGzipStream.hpp:22, from test/testbamdamage.cpp:1: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void libmaus2::bambam::BamHeader::init(stream_type&) [with stream_type = libmaus2::lz::BgzfInflateStream]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testbamdamage test/testbamdamage-testbamdamage.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/arm-linux-gnueabi -lz libtool: link: arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testbamdamage test/testbamdamage-testbamdamage.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/arm-linux-gnueabi -lz -fopenmp -pthread arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testgamma-testgamma.o `test -f 'test/testgamma.cpp' || echo './'`test/testgamma.cpp In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/huffman/IndexLoaderBase.hpp:24, from ./libmaus2/huffman/IndexDecoderDataArray.hpp:23, from ./libmaus2/gamma/GammaPartitionDecoder.hpp:21, from test/testgamma.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/huffman/IndexLoaderBase.hpp:24, from ./libmaus2/huffman/IndexDecoderDataArray.hpp:23, from ./libmaus2/gamma/GammaPartitionDecoder.hpp:21, from test/testgamma.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In function ‘void testLow()’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/huffman/IndexLoaderBase.hpp:24, from ./libmaus2/huffman/IndexDecoderDataArray.hpp:23, from ./libmaus2/gamma/GammaPartitionDecoder.hpp:21, from test/testgamma.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::huffman::IndexEntry&}; _Tp = libmaus2::huffman::IndexEntry; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/huffman/IndexLoaderBase.hpp:24, from ./libmaus2/huffman/IndexDecoderDataArray.hpp:23, from ./libmaus2/gamma/GammaPartitionDecoder.hpp:21, from test/testgamma.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = libmaus2::huffman::IndexEntry; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/huffman/IndexLoaderBase.hpp:24, from ./libmaus2/huffman/IndexDecoderDataArray.hpp:23, from ./libmaus2/gamma/GammaPartitionDecoder.hpp:21, from test/testgamma.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector > >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::huffman::IndexEntry}; _Tp = libmaus2::huffman::IndexEntry; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {libmaus2::huffman::IndexEntry}; _Tp = libmaus2::huffman::IndexEntry; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::gamma::Interval}; _Tp = libmaus2::gamma::Interval; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::gamma::FlaggedInterval}; _Tp = libmaus2::gamma::FlaggedInterval; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {libmaus2::gamma::FlaggedInterval}; _Tp = libmaus2::gamma::FlaggedInterval; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from ./libmaus2/lz/StreamWrapperBuffer.hpp:23, from ./libmaus2/lz/StreamWrapper.hpp:22, from ./libmaus2/aio/PosixFdInput.hpp:41, from ./libmaus2/aio/PosixFdInputWrapper.hpp:22, from ./libmaus2/aio/PosixFdInputStream.hpp:22, from ./libmaus2/aio/PosixFdInputStreamFactory.hpp:23, from ./libmaus2/aio/InputStreamFactoryContainer.hpp:23, from ./libmaus2/huffman/IndexLoaderBase.hpp:25, from ./libmaus2/huffman/IndexDecoderDataArray.hpp:23, from ./libmaus2/gamma/GammaPartitionDecoder.hpp:21, from test/testgamma.cpp:19: ./libmaus2/autoarray/AutoArray.hpp: In constructor ‘libmaus2::autoarray::AutoArray::AutoArray(uint64_t, bool) [with N = libmaus2::gamma::Interval; libmaus2::autoarray::alloc_type atype = (libmaus2::autoarray::alloc_type)0; erase_type = libmaus2::autoarray::ArrayErase]’: ./libmaus2/autoarray/AutoArray.hpp:1801:5: warning: ‘’ may be used uninitialized in this function [-Wmaybe-uninitialized] array[i] = N(); ^~~~~ In file included from ./libmaus2/gamma/SparseGammaGapFileSet.hpp:25, from test/testgamma.cpp:41: ./libmaus2/gamma/GammaGapEncoder.hpp: In member function ‘void libmaus2::gamma::GammaGapEncoder::encode(iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]’: ./libmaus2/gamma/GammaGapEncoder.hpp:154:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 void encode(iterator ita, uint64_t const n) ^~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/huffman/IndexLoaderBase.hpp:24, from ./libmaus2/huffman/IndexDecoderDataArray.hpp:23, from ./libmaus2/gamma/GammaPartitionDecoder.hpp:21, from test/testgamma.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from ./libmaus2/gamma/SparseGammaGapFileSet.hpp:25, from test/testgamma.cpp:41: ./libmaus2/gamma/GammaGapEncoder.hpp: In function ‘void testgammagap()’: ./libmaus2/gamma/GammaGapEncoder.hpp:168:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 encode(ita,n); ^~~~~~ ./libmaus2/gamma/GammaGapEncoder.hpp:168:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 encode(ita,n); ^~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/huffman/IndexLoaderBase.hpp:24, from ./libmaus2/huffman/IndexDecoderDataArray.hpp:23, from ./libmaus2/gamma/GammaPartitionDecoder.hpp:21, from test/testgamma.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In function ‘void testpartitionsingle()’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/huffman/IndexLoaderBase.hpp:24, from ./libmaus2/huffman/IndexDecoderDataArray.hpp:23, from ./libmaus2/gamma/GammaPartitionDecoder.hpp:21, from test/testgamma.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In function ‘_ZN8libmaus25gamma39SparseGammaGapMultiFileLevelSetTemplateIyE12mergeToDenseERNS_4util21TempFileNameGeneratorEyy._omp_fn.3’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In static member function ‘static std::vector libmaus2::gamma::SparseGammaGapFileIndexMultiDecoder::getSplitKeys(libmaus2::gamma::SparseGammaGapFileIndexMultiDecoder::this_type&, libmaus2::gamma::SparseGammaGapFileIndexMultiDecoder::this_type&, uint64_t, uint64_t&)’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/huffman/IndexLoaderBase.hpp:24, from ./libmaus2/huffman/IndexDecoderDataArray.hpp:23, from ./libmaus2/gamma/GammaPartitionDecoder.hpp:21, from test/testgamma.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::gamma::SparseGammaGapFile&}; _Tp = libmaus2::gamma::SparseGammaGapFile; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector >::iterator’ {aka ‘__gnu_cxx::__normal_iterator > >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/lz/StreamWrapperBuffer.hpp:23, from ./libmaus2/lz/StreamWrapper.hpp:22, from ./libmaus2/aio/PosixFdInput.hpp:41, from ./libmaus2/aio/PosixFdInputWrapper.hpp:22, from ./libmaus2/aio/PosixFdInputStream.hpp:22, from ./libmaus2/aio/PosixFdInputStreamFactory.hpp:23, from ./libmaus2/aio/InputStreamFactoryContainer.hpp:23, from ./libmaus2/huffman/IndexLoaderBase.hpp:25, from ./libmaus2/huffman/IndexDecoderDataArray.hpp:23, from ./libmaus2/gamma/GammaPartitionDecoder.hpp:21, from test/testgamma.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::gamma::SparseGammaGapFile; _Compare = __gnu_cxx::__ops::_Iter_comp_val >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/huffman/IndexLoaderBase.hpp:24, from ./libmaus2/huffman/IndexDecoderDataArray.hpp:23, from ./libmaus2/gamma/GammaPartitionDecoder.hpp:21, from test/testgamma.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In member function ‘void std::priority_queue<_Tp, _Sequence, _Compare>::push(const value_type&) [with _Tp = libmaus2::gamma::SparseGammaGapFile; _Sequence = std::vector >; _Compare = std::less]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/huffman/IndexLoaderBase.hpp:24, from ./libmaus2/huffman/IndexDecoderDataArray.hpp:23, from ./libmaus2/gamma/GammaPartitionDecoder.hpp:21, from test/testgamma.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::gamma::SparseGammaGapMultiFile&}; _Tp = libmaus2::gamma::SparseGammaGapMultiFile; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector >::iterator’ {aka ‘__gnu_cxx::__normal_iterator > >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/lz/StreamWrapperBuffer.hpp:23, from ./libmaus2/lz/StreamWrapper.hpp:22, from ./libmaus2/aio/PosixFdInput.hpp:41, from ./libmaus2/aio/PosixFdInputWrapper.hpp:22, from ./libmaus2/aio/PosixFdInputStream.hpp:22, from ./libmaus2/aio/PosixFdInputStreamFactory.hpp:23, from ./libmaus2/aio/InputStreamFactoryContainer.hpp:23, from ./libmaus2/huffman/IndexLoaderBase.hpp:25, from ./libmaus2/huffman/IndexDecoderDataArray.hpp:23, from ./libmaus2/gamma/GammaPartitionDecoder.hpp:21, from test/testgamma.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::gamma::SparseGammaGapMultiFile; _Compare = __gnu_cxx::__ops::_Iter_comp_val >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/huffman/IndexLoaderBase.hpp:24, from ./libmaus2/huffman/IndexDecoderDataArray.hpp:23, from ./libmaus2/gamma/GammaPartitionDecoder.hpp:21, from test/testgamma.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In member function ‘void std::priority_queue<_Tp, _Sequence, _Compare>::push(const value_type&) [with _Tp = libmaus2::gamma::SparseGammaGapMultiFile; _Sequence = std::vector >; _Compare = std::less]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/map:60, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/lz/StreamWrapperBuffer.hpp:23, from ./libmaus2/lz/StreamWrapper.hpp:22, from ./libmaus2/aio/PosixFdInput.hpp:41, from ./libmaus2/aio/PosixFdInputWrapper.hpp:22, from ./libmaus2/aio/PosixFdInputStream.hpp:22, from ./libmaus2/aio/PosixFdInputStreamFactory.hpp:23, from ./libmaus2/aio/InputStreamFactoryContainer.hpp:23, from ./libmaus2/huffman/IndexLoaderBase.hpp:25, from ./libmaus2/huffman/IndexDecoderDataArray.hpp:23, from ./libmaus2/gamma/GammaPartitionDecoder.hpp:21, from test/testgamma.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h: In member function ‘void std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_erase_aux(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator) [with _Key = long long unsigned int; _Val = std::pair::SparseGammaGapMergeInfo> >; _KeyOfValue = std::_Select1st::SparseGammaGapMergeInfo> > >; _Compare = std::less; _Alloc = std::allocator::SparseGammaGapMergeInfo> > >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:2489:5: note: parameter passing for argument of type ‘std::_Rb_tree::SparseGammaGapMergeInfo> >, std::_Select1st::SparseGammaGapMergeInfo> > >, std::less, std::allocator::SparseGammaGapMergeInfo> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator::SparseGammaGapMergeInfo> > >’} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h: In member function ‘void std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_erase_aux(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator) [with _Key = long long unsigned int; _Val = std::pair >::SparseGammaGapMergeInfo> >; _KeyOfValue = std::_Select1st >::SparseGammaGapMergeInfo> > >; _Compare = std::less; _Alloc = std::allocator >::SparseGammaGapMergeInfo> > >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:2489:5: note: parameter passing for argument of type ‘std::_Rb_tree >::SparseGammaGapMergeInfo> >, std::_Select1st >::SparseGammaGapMergeInfo> > >, std::less, std::allocator >::SparseGammaGapMergeInfo> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >::SparseGammaGapMergeInfo> > >’} changed in GCC 7.1 In file included from /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/lz/StreamWrapperBuffer.hpp:23, from ./libmaus2/lz/StreamWrapper.hpp:22, from ./libmaus2/aio/PosixFdInput.hpp:41, from ./libmaus2/aio/PosixFdInputWrapper.hpp:22, from ./libmaus2/aio/PosixFdInputStream.hpp:22, from ./libmaus2/aio/PosixFdInputStreamFactory.hpp:23, from ./libmaus2/aio/InputStreamFactoryContainer.hpp:23, from ./libmaus2/huffman/IndexLoaderBase.hpp:25, from ./libmaus2/huffman/IndexDecoderDataArray.hpp:23, from ./libmaus2/gamma/GammaPartitionDecoder.hpp:21, from test/testgamma.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::gamma::SparseGammaGapFile; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::gamma::SparseGammaGapMultiFile; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/huffman/IndexLoaderBase.hpp:24, from ./libmaus2/huffman/IndexDecoderDataArray.hpp:23, from ./libmaus2/gamma/GammaPartitionDecoder.hpp:21, from test/testgamma.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In function ‘_ZN8libmaus25gamma39SparseGammaGapMultiFileLevelSetTemplateINS_4math15UnsignedIntegerILj4EEEE12mergeToDenseERNS_4util21TempFileNameGeneratorEyy._omp_fn.4’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/map:60, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/lz/StreamWrapperBuffer.hpp:23, from ./libmaus2/lz/StreamWrapper.hpp:22, from ./libmaus2/aio/PosixFdInput.hpp:41, from ./libmaus2/aio/PosixFdInputWrapper.hpp:22, from ./libmaus2/aio/PosixFdInputStream.hpp:22, from ./libmaus2/aio/PosixFdInputStreamFactory.hpp:23, from ./libmaus2/aio/InputStreamFactoryContainer.hpp:23, from ./libmaus2/huffman/IndexLoaderBase.hpp:25, from ./libmaus2/huffman/IndexDecoderDataArray.hpp:23, from ./libmaus2/gamma/GammaPartitionDecoder.hpp:21, from test/testgamma.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h: In member function ‘std::pair std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:2149:5: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair::SparseGammaGapMergeInfo> >; _KeyOfValue = std::_Select1st::SparseGammaGapMergeInfo> > >; _Compare = std::less; _Alloc = std::allocator::SparseGammaGapMergeInfo> > >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type ‘std::_Rb_tree::SparseGammaGapMergeInfo> >, std::_Select1st::SparseGammaGapMergeInfo> > >, std::less, std::allocator::SparseGammaGapMergeInfo> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator::SparseGammaGapMergeInfo> > >’} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/map:61, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/lz/StreamWrapperBuffer.hpp:23, from ./libmaus2/lz/StreamWrapper.hpp:22, from ./libmaus2/aio/PosixFdInput.hpp:41, from ./libmaus2/aio/PosixFdInputWrapper.hpp:22, from ./libmaus2/aio/PosixFdInputStream.hpp:22, from ./libmaus2/aio/PosixFdInputStreamFactory.hpp:23, from ./libmaus2/aio/InputStreamFactoryContainer.hpp:23, from ./libmaus2/huffman/IndexLoaderBase.hpp:25, from ./libmaus2/huffman/IndexDecoderDataArray.hpp:23, from ./libmaus2/gamma/GammaPartitionDecoder.hpp:21, from test/testgamma.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr::SparseGammaGapMergeInfo>; _Compare = std::less; _Alloc = std::allocator::SparseGammaGapMergeInfo> > >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree::SparseGammaGapMergeInfo> >, std::_Select1st::SparseGammaGapMergeInfo> > >, std::less, std::allocator::SparseGammaGapMergeInfo> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator::SparseGammaGapMergeInfo> > >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabi/include/c++/8/map:60, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/lz/StreamWrapperBuffer.hpp:23, from ./libmaus2/lz/StreamWrapper.hpp:22, from ./libmaus2/aio/PosixFdInput.hpp:41, from ./libmaus2/aio/PosixFdInputWrapper.hpp:22, from ./libmaus2/aio/PosixFdInputStream.hpp:22, from ./libmaus2/aio/PosixFdInputStreamFactory.hpp:23, from ./libmaus2/aio/InputStreamFactoryContainer.hpp:23, from ./libmaus2/huffman/IndexLoaderBase.hpp:25, from ./libmaus2/huffman/IndexDecoderDataArray.hpp:23, from ./libmaus2/gamma/GammaPartitionDecoder.hpp:21, from test/testgamma.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h: In member function ‘bool libmaus2::gamma::SparseGammaGapMultiFileLevelSetTemplate<_data_type>::checkMergePacket(uint64_t&, uint64_t&) [with _data_type = long long unsigned int]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type ‘std::_Rb_tree::SparseGammaGapMergeInfo> >, std::_Select1st::SparseGammaGapMergeInfo> > >, std::less, std::allocator::SparseGammaGapMergeInfo> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator::SparseGammaGapMergeInfo> > >’} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/map:61, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/lz/StreamWrapperBuffer.hpp:23, from ./libmaus2/lz/StreamWrapper.hpp:22, from ./libmaus2/aio/PosixFdInput.hpp:41, from ./libmaus2/aio/PosixFdInputWrapper.hpp:22, from ./libmaus2/aio/PosixFdInputStream.hpp:22, from ./libmaus2/aio/PosixFdInputStreamFactory.hpp:23, from ./libmaus2/aio/InputStreamFactoryContainer.hpp:23, from ./libmaus2/huffman/IndexLoaderBase.hpp:25, from ./libmaus2/huffman/IndexDecoderDataArray.hpp:23, from ./libmaus2/gamma/GammaPartitionDecoder.hpp:21, from test/testgamma.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h: In function ‘_ZN8libmaus25gamma39SparseGammaGapMultiFileLevelSetTemplateIyE5mergeERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEy._omp_fn.1’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree::SparseGammaGapMergeInfo> >, std::_Select1st::SparseGammaGapMergeInfo> > >, std::less, std::allocator::SparseGammaGapMergeInfo> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator::SparseGammaGapMergeInfo> > >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabi/include/c++/8/map:60, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/lz/StreamWrapperBuffer.hpp:23, from ./libmaus2/lz/StreamWrapper.hpp:22, from ./libmaus2/aio/PosixFdInput.hpp:41, from ./libmaus2/aio/PosixFdInputWrapper.hpp:22, from ./libmaus2/aio/PosixFdInputStream.hpp:22, from ./libmaus2/aio/PosixFdInputStreamFactory.hpp:23, from ./libmaus2/aio/InputStreamFactoryContainer.hpp:23, from ./libmaus2/huffman/IndexLoaderBase.hpp:25, from ./libmaus2/huffman/IndexDecoderDataArray.hpp:23, from ./libmaus2/gamma/GammaPartitionDecoder.hpp:21, from test/testgamma.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type ‘std::_Rb_tree::SparseGammaGapMergeInfo> >, std::_Select1st::SparseGammaGapMergeInfo> > >, std::less, std::allocator::SparseGammaGapMergeInfo> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator::SparseGammaGapMergeInfo> > >’} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type ‘std::_Rb_tree::SparseGammaGapMergeInfo> >, std::_Select1st::SparseGammaGapMergeInfo> > >, std::less, std::allocator::SparseGammaGapMergeInfo> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator::SparseGammaGapMergeInfo> > >’} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type ‘std::_Rb_tree::SparseGammaGapMergeInfo> >, std::_Select1st::SparseGammaGapMergeInfo> > >, std::less, std::allocator::SparseGammaGapMergeInfo> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator::SparseGammaGapMergeInfo> > >’} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >::SparseGammaGapMergeInfo> >; _KeyOfValue = std::_Select1st >::SparseGammaGapMergeInfo> > >; _Compare = std::less; _Alloc = std::allocator >::SparseGammaGapMergeInfo> > >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type ‘std::_Rb_tree >::SparseGammaGapMergeInfo> >, std::_Select1st >::SparseGammaGapMergeInfo> > >, std::less, std::allocator >::SparseGammaGapMergeInfo> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >::SparseGammaGapMergeInfo> > >’} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/map:61, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/lz/StreamWrapperBuffer.hpp:23, from ./libmaus2/lz/StreamWrapper.hpp:22, from ./libmaus2/aio/PosixFdInput.hpp:41, from ./libmaus2/aio/PosixFdInputWrapper.hpp:22, from ./libmaus2/aio/PosixFdInputStream.hpp:22, from ./libmaus2/aio/PosixFdInputStreamFactory.hpp:23, from ./libmaus2/aio/InputStreamFactoryContainer.hpp:23, from ./libmaus2/huffman/IndexLoaderBase.hpp:25, from ./libmaus2/huffman/IndexDecoderDataArray.hpp:23, from ./libmaus2/gamma/GammaPartitionDecoder.hpp:21, from test/testgamma.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr >::SparseGammaGapMergeInfo>; _Compare = std::less; _Alloc = std::allocator >::SparseGammaGapMergeInfo> > >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree >::SparseGammaGapMergeInfo> >, std::_Select1st >::SparseGammaGapMergeInfo> > >, std::less, std::allocator >::SparseGammaGapMergeInfo> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >::SparseGammaGapMergeInfo> > >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabi/include/c++/8/map:60, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/lz/StreamWrapperBuffer.hpp:23, from ./libmaus2/lz/StreamWrapper.hpp:22, from ./libmaus2/aio/PosixFdInput.hpp:41, from ./libmaus2/aio/PosixFdInputWrapper.hpp:22, from ./libmaus2/aio/PosixFdInputStream.hpp:22, from ./libmaus2/aio/PosixFdInputStreamFactory.hpp:23, from ./libmaus2/aio/InputStreamFactoryContainer.hpp:23, from ./libmaus2/huffman/IndexLoaderBase.hpp:25, from ./libmaus2/huffman/IndexDecoderDataArray.hpp:23, from ./libmaus2/gamma/GammaPartitionDecoder.hpp:21, from test/testgamma.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h: In member function ‘bool libmaus2::gamma::SparseGammaGapMultiFileLevelSetTemplate<_data_type>::checkMergePacket(uint64_t&, uint64_t&) [with _data_type = libmaus2::math::UnsignedInteger<4>]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type ‘std::_Rb_tree >::SparseGammaGapMergeInfo> >, std::_Select1st >::SparseGammaGapMergeInfo> > >, std::less, std::allocator >::SparseGammaGapMergeInfo> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >::SparseGammaGapMergeInfo> > >’} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/map:61, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/lz/StreamWrapperBuffer.hpp:23, from ./libmaus2/lz/StreamWrapper.hpp:22, from ./libmaus2/aio/PosixFdInput.hpp:41, from ./libmaus2/aio/PosixFdInputWrapper.hpp:22, from ./libmaus2/aio/PosixFdInputStream.hpp:22, from ./libmaus2/aio/PosixFdInputStreamFactory.hpp:23, from ./libmaus2/aio/InputStreamFactoryContainer.hpp:23, from ./libmaus2/huffman/IndexLoaderBase.hpp:25, from ./libmaus2/huffman/IndexDecoderDataArray.hpp:23, from ./libmaus2/gamma/GammaPartitionDecoder.hpp:21, from test/testgamma.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h: In function ‘_ZN8libmaus25gamma39SparseGammaGapMultiFileLevelSetTemplateINS_4math15UnsignedIntegerILj4EEEE5mergeERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEy._omp_fn.2’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree >::SparseGammaGapMergeInfo> >, std::_Select1st >::SparseGammaGapMergeInfo> > >, std::less, std::allocator >::SparseGammaGapMergeInfo> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >::SparseGammaGapMergeInfo> > >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabi/include/c++/8/map:60, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/lz/StreamWrapperBuffer.hpp:23, from ./libmaus2/lz/StreamWrapper.hpp:22, from ./libmaus2/aio/PosixFdInput.hpp:41, from ./libmaus2/aio/PosixFdInputWrapper.hpp:22, from ./libmaus2/aio/PosixFdInputStream.hpp:22, from ./libmaus2/aio/PosixFdInputStreamFactory.hpp:23, from ./libmaus2/aio/InputStreamFactoryContainer.hpp:23, from ./libmaus2/huffman/IndexLoaderBase.hpp:25, from ./libmaus2/huffman/IndexDecoderDataArray.hpp:23, from ./libmaus2/gamma/GammaPartitionDecoder.hpp:21, from test/testgamma.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type ‘std::_Rb_tree >::SparseGammaGapMergeInfo> >, std::_Select1st >::SparseGammaGapMergeInfo> > >, std::less, std::allocator >::SparseGammaGapMergeInfo> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >::SparseGammaGapMergeInfo> > >’} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type ‘std::_Rb_tree >::SparseGammaGapMergeInfo> >, std::_Select1st >::SparseGammaGapMergeInfo> > >, std::less, std::allocator >::SparseGammaGapMergeInfo> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >::SparseGammaGapMergeInfo> > >’} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type ‘std::_Rb_tree >::SparseGammaGapMergeInfo> >, std::_Select1st >::SparseGammaGapMergeInfo> > >, std::less, std::allocator >::SparseGammaGapMergeInfo> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >::SparseGammaGapMergeInfo> > >’} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h: In member function ‘void std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_erase_aux(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator) [with _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:2489:5: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/map:61, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/lz/StreamWrapperBuffer.hpp:23, from ./libmaus2/lz/StreamWrapper.hpp:22, from ./libmaus2/aio/PosixFdInput.hpp:41, from ./libmaus2/aio/PosixFdInputWrapper.hpp:22, from ./libmaus2/aio/PosixFdInputStream.hpp:22, from ./libmaus2/aio/PosixFdInputStreamFactory.hpp:23, from ./libmaus2/aio/InputStreamFactoryContainer.hpp:23, from ./libmaus2/huffman/IndexLoaderBase.hpp:25, from ./libmaus2/huffman/IndexDecoderDataArray.hpp:23, from ./libmaus2/gamma/GammaPartitionDecoder.hpp:21, from test/testgamma.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](std::map<_Key, _Tp, _Compare, _Alloc>::key_type&&) [with _Key = long long unsigned int; _Tp = std::deque; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:518:8: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabi/include/c++/8/map:60, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/lz/StreamWrapperBuffer.hpp:23, from ./libmaus2/lz/StreamWrapper.hpp:22, from ./libmaus2/aio/PosixFdInput.hpp:41, from ./libmaus2/aio/PosixFdInputWrapper.hpp:22, from ./libmaus2/aio/PosixFdInputStream.hpp:22, from ./libmaus2/aio/PosixFdInputStreamFactory.hpp:23, from ./libmaus2/aio/InputStreamFactoryContainer.hpp:23, from ./libmaus2/huffman/IndexLoaderBase.hpp:25, from ./libmaus2/huffman/IndexDecoderDataArray.hpp:23, from ./libmaus2/gamma/GammaPartitionDecoder.hpp:21, from test/testgamma.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h: In member function ‘void libmaus2::gamma::SparseGammaGapFileLevelSetTemplate<_data_type>::addFile(const string&) [with _data_type = libmaus2::math::UnsignedInteger<4>]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/map:61, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/lz/StreamWrapperBuffer.hpp:23, from ./libmaus2/lz/StreamWrapper.hpp:22, from ./libmaus2/aio/PosixFdInput.hpp:41, from ./libmaus2/aio/PosixFdInputWrapper.hpp:22, from ./libmaus2/aio/PosixFdInputStream.hpp:22, from ./libmaus2/aio/PosixFdInputStreamFactory.hpp:23, from ./libmaus2/aio/InputStreamFactoryContainer.hpp:23, from ./libmaus2/huffman/IndexLoaderBase.hpp:25, from ./libmaus2/huffman/IndexDecoderDataArray.hpp:23, from ./libmaus2/gamma/GammaPartitionDecoder.hpp:21, from test/testgamma.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:518:8: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabi/include/c++/8/map:60, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/lz/StreamWrapperBuffer.hpp:23, from ./libmaus2/lz/StreamWrapper.hpp:22, from ./libmaus2/aio/PosixFdInput.hpp:41, from ./libmaus2/aio/PosixFdInputWrapper.hpp:22, from ./libmaus2/aio/PosixFdInputStream.hpp:22, from ./libmaus2/aio/PosixFdInputStreamFactory.hpp:23, from ./libmaus2/aio/InputStreamFactoryContainer.hpp:23, from ./libmaus2/huffman/IndexLoaderBase.hpp:25, from ./libmaus2/huffman/IndexDecoderDataArray.hpp:23, from ./libmaus2/gamma/GammaPartitionDecoder.hpp:21, from test/testgamma.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h: In member function ‘void libmaus2::gamma::SparseGammaGapFileLevelSetTemplate<_data_type>::addFile(const string&) [with _data_type = long long unsigned int]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/map:61, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/lz/StreamWrapperBuffer.hpp:23, from ./libmaus2/lz/StreamWrapper.hpp:22, from ./libmaus2/aio/PosixFdInput.hpp:41, from ./libmaus2/aio/PosixFdInputWrapper.hpp:22, from ./libmaus2/aio/PosixFdInputStream.hpp:22, from ./libmaus2/aio/PosixFdInputStreamFactory.hpp:23, from ./libmaus2/aio/InputStreamFactoryContainer.hpp:23, from ./libmaus2/huffman/IndexLoaderBase.hpp:25, from ./libmaus2/huffman/IndexDecoderDataArray.hpp:23, from ./libmaus2/gamma/GammaPartitionDecoder.hpp:21, from test/testgamma.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:518:8: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabi/include/c++/8/map:60, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/lz/StreamWrapperBuffer.hpp:23, from ./libmaus2/lz/StreamWrapper.hpp:22, from ./libmaus2/aio/PosixFdInput.hpp:41, from ./libmaus2/aio/PosixFdInputWrapper.hpp:22, from ./libmaus2/aio/PosixFdInputStream.hpp:22, from ./libmaus2/aio/PosixFdInputStreamFactory.hpp:23, from ./libmaus2/aio/InputStreamFactoryContainer.hpp:23, from ./libmaus2/huffman/IndexLoaderBase.hpp:25, from ./libmaus2/huffman/IndexDecoderDataArray.hpp:23, from ./libmaus2/gamma/GammaPartitionDecoder.hpp:21, from test/testgamma.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h: In member function ‘void std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_erase_aux(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator) [with _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:2489:5: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h: In member function ‘void libmaus2::gamma::SparseGammaGapMultiFileLevelSetTemplate<_data_type>::checkMerge() [with _data_type = libmaus2::math::UnsignedInteger<4>]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/map:61, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/lz/StreamWrapperBuffer.hpp:23, from ./libmaus2/lz/StreamWrapper.hpp:22, from ./libmaus2/aio/PosixFdInput.hpp:41, from ./libmaus2/aio/PosixFdInputWrapper.hpp:22, from ./libmaus2/aio/PosixFdInputStream.hpp:22, from ./libmaus2/aio/PosixFdInputStreamFactory.hpp:23, from ./libmaus2/aio/InputStreamFactoryContainer.hpp:23, from ./libmaus2/huffman/IndexLoaderBase.hpp:25, from ./libmaus2/huffman/IndexDecoderDataArray.hpp:23, from ./libmaus2/gamma/GammaPartitionDecoder.hpp:21, from test/testgamma.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabi/include/c++/8/map:60, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/lz/StreamWrapperBuffer.hpp:23, from ./libmaus2/lz/StreamWrapper.hpp:22, from ./libmaus2/aio/PosixFdInput.hpp:41, from ./libmaus2/aio/PosixFdInputWrapper.hpp:22, from ./libmaus2/aio/PosixFdInputStream.hpp:22, from ./libmaus2/aio/PosixFdInputStreamFactory.hpp:23, from ./libmaus2/aio/InputStreamFactoryContainer.hpp:23, from ./libmaus2/huffman/IndexLoaderBase.hpp:25, from ./libmaus2/huffman/IndexDecoderDataArray.hpp:23, from ./libmaus2/gamma/GammaPartitionDecoder.hpp:21, from test/testgamma.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type ‘std::_Rb_tree >::SparseGammaGapMergeInfo> >, std::_Select1st >::SparseGammaGapMergeInfo> > >, std::less, std::allocator >::SparseGammaGapMergeInfo> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >::SparseGammaGapMergeInfo> > >’} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type ‘std::_Rb_tree >::SparseGammaGapMergeInfo> >, std::_Select1st >::SparseGammaGapMergeInfo> > >, std::less, std::allocator >::SparseGammaGapMergeInfo> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >::SparseGammaGapMergeInfo> > >’} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/map:61, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/lz/StreamWrapperBuffer.hpp:23, from ./libmaus2/lz/StreamWrapper.hpp:22, from ./libmaus2/aio/PosixFdInput.hpp:41, from ./libmaus2/aio/PosixFdInputWrapper.hpp:22, from ./libmaus2/aio/PosixFdInputStream.hpp:22, from ./libmaus2/aio/PosixFdInputStreamFactory.hpp:23, from ./libmaus2/aio/InputStreamFactoryContainer.hpp:23, from ./libmaus2/huffman/IndexLoaderBase.hpp:25, from ./libmaus2/huffman/IndexDecoderDataArray.hpp:23, from ./libmaus2/gamma/GammaPartitionDecoder.hpp:21, from test/testgamma.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h: In function ‘void testsparsegammamultifilesetmergedense2()’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:518:8: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h: In function ‘void testsparsegammamultifilesetmerge2()’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:518:8: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabi/include/c++/8/map:60, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/lz/StreamWrapperBuffer.hpp:23, from ./libmaus2/lz/StreamWrapper.hpp:22, from ./libmaus2/aio/PosixFdInput.hpp:41, from ./libmaus2/aio/PosixFdInputWrapper.hpp:22, from ./libmaus2/aio/PosixFdInputStream.hpp:22, from ./libmaus2/aio/PosixFdInputStreamFactory.hpp:23, from ./libmaus2/aio/InputStreamFactoryContainer.hpp:23, from ./libmaus2/huffman/IndexLoaderBase.hpp:25, from ./libmaus2/huffman/IndexDecoderDataArray.hpp:23, from ./libmaus2/gamma/GammaPartitionDecoder.hpp:21, from test/testgamma.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h: In member function ‘void libmaus2::gamma::SparseGammaGapMultiFileLevelSetTemplate<_data_type>::checkMerge() [with _data_type = long long unsigned int]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/map:61, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/lz/StreamWrapperBuffer.hpp:23, from ./libmaus2/lz/StreamWrapper.hpp:22, from ./libmaus2/aio/PosixFdInput.hpp:41, from ./libmaus2/aio/PosixFdInputWrapper.hpp:22, from ./libmaus2/aio/PosixFdInputStream.hpp:22, from ./libmaus2/aio/PosixFdInputStreamFactory.hpp:23, from ./libmaus2/aio/InputStreamFactoryContainer.hpp:23, from ./libmaus2/huffman/IndexLoaderBase.hpp:25, from ./libmaus2/huffman/IndexDecoderDataArray.hpp:23, from ./libmaus2/gamma/GammaPartitionDecoder.hpp:21, from test/testgamma.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabi/include/c++/8/map:60, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/lz/StreamWrapperBuffer.hpp:23, from ./libmaus2/lz/StreamWrapper.hpp:22, from ./libmaus2/aio/PosixFdInput.hpp:41, from ./libmaus2/aio/PosixFdInputWrapper.hpp:22, from ./libmaus2/aio/PosixFdInputStream.hpp:22, from ./libmaus2/aio/PosixFdInputStreamFactory.hpp:23, from ./libmaus2/aio/InputStreamFactoryContainer.hpp:23, from ./libmaus2/huffman/IndexLoaderBase.hpp:25, from ./libmaus2/huffman/IndexDecoderDataArray.hpp:23, from ./libmaus2/gamma/GammaPartitionDecoder.hpp:21, from test/testgamma.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type ‘std::_Rb_tree::SparseGammaGapMergeInfo> >, std::_Select1st::SparseGammaGapMergeInfo> > >, std::less, std::allocator::SparseGammaGapMergeInfo> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator::SparseGammaGapMergeInfo> > >’} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type ‘std::_Rb_tree::SparseGammaGapMergeInfo> >, std::_Select1st::SparseGammaGapMergeInfo> > >, std::less, std::allocator::SparseGammaGapMergeInfo> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator::SparseGammaGapMergeInfo> > >’} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/map:61, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/lz/StreamWrapperBuffer.hpp:23, from ./libmaus2/lz/StreamWrapper.hpp:22, from ./libmaus2/aio/PosixFdInput.hpp:41, from ./libmaus2/aio/PosixFdInputWrapper.hpp:22, from ./libmaus2/aio/PosixFdInputStream.hpp:22, from ./libmaus2/aio/PosixFdInputStreamFactory.hpp:23, from ./libmaus2/aio/InputStreamFactoryContainer.hpp:23, from ./libmaus2/huffman/IndexLoaderBase.hpp:25, from ./libmaus2/huffman/IndexDecoderDataArray.hpp:23, from ./libmaus2/gamma/GammaPartitionDecoder.hpp:21, from test/testgamma.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h: In function ‘void testsparsegammamultifilesetmergedense()’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:518:8: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h: In function ‘void testsparsegammamultifilesetmerge()’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:518:8: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testgamma test/testgamma-testgamma.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/arm-linux-gnueabi -lz libtool: link: arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testgamma test/testgamma-testgamma.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/arm-linux-gnueabi -lz -fopenmp -pthread arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testcompact-testcompact.o `test -f 'test/testcompact.cpp' || echo './'`test/testcompact.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testcompact test/testcompact-testcompact.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/arm-linux-gnueabi -lz libtool: link: arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testcompact test/testcompact-testcompact.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/arm-linux-gnueabi -lz -fopenmp -pthread arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testbytetocompact-testbytetocompact.o `test -f 'test/testbytetocompact.cpp' || echo './'`test/testbytetocompact.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testbytetocompact test/testbytetocompact-testbytetocompact.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/arm-linux-gnueabi -lz libtool: link: arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testbytetocompact test/testbytetocompact-testbytetocompact.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/arm-linux-gnueabi -lz -fopenmp -pthread arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testscramtosam-testscramtosam.o `test -f 'test/testscramtosam.cpp' || echo './'`test/testscramtosam.cpp arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/irods/a-IRodsSystem.o `test -f 'libmaus2/irods/IRodsSystem.cpp' || echo './'`libmaus2/irods/IRodsSystem.cpp arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/irods/a-IRodsFileBase.o `test -f 'libmaus2/irods/IRodsFileBase.cpp' || echo './'`libmaus2/irods/IRodsFileBase.cpp rm -f libmaus2_irods.a arm-linux-gnueabi-ar cru libmaus2_irods.a libmaus2/irods/a-IRodsSystem.o libmaus2/irods/a-IRodsFileBase.o arm-linux-gnueabi-ar: `u' modifier ignored since `D' is the default (see `U') arm-linux-gnueabi-ranlib libmaus2_irods.a /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testscramtosam test/testscramtosam-testscramtosam.o libmaus2_irods.a libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -ldl -lrt -L/usr/lib/arm-linux-gnueabi -lz libtool: link: arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testscramtosam test/testscramtosam-testscramtosam.o libmaus2_irods.a ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -ldl -lrt -L/usr/lib/arm-linux-gnueabi -lz -fopenmp -pthread arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testpacdecode-testpacdecode.o `test -f 'test/testpacdecode.cpp' || echo './'`test/testpacdecode.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testpacdecode test/testpacdecode-testpacdecode.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/arm-linux-gnueabi -lz libtool: link: arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testpacdecode test/testpacdecode-testpacdecode.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/arm-linux-gnueabi -lz -fopenmp -pthread arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testutf8split-testutf8split.o `test -f 'test/testutf8split.cpp' || echo './'`test/testutf8split.cpp test/testutf8split.cpp: In function ‘void testUtf8Seek(const string&)’: test/testutf8split.cpp:146:26: warning: comparison of unsigned expression >= 0 is always true [-Wtype-limits] while ( (w=decwr.get()) >= 0 ) ~~~~~~~~~~~~~~~~^~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/ArgInfo.hpp:25, from test/testutf8split.cpp:21: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long int&}; _Tp = long long int; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/ArgInfo.hpp:25, from test/testutf8split.cpp:21: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In member function ‘virtual void libmaus2::huffman::HuffmanTreeLeaf::symbolVector(std::vector&) const’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/ArgInfo.hpp:25, from test/testutf8split.cpp:21: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/ArgInfo.hpp:25, from test/testutf8split.cpp:21: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In member function ‘virtual void libmaus2::huffman::HuffmanTreeLeaf::depthVector(std::vector&, uint64_t) const’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/ArgInfo.hpp:25, from test/testutf8split.cpp:21: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector > >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/ArgInfo.hpp:25, from test/testutf8split.cpp:21: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In member function ‘uint64_t libmaus2::wavelet::ImpExternalWaveletGeneratorHuffman::createFinalStream(stream_type&) [with stream_type = std::basic_ostream]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/map:60, from ./libmaus2/util/ArgInfo.hpp:24, from test/testutf8split.cpp:21: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = const libmaus2::huffman::HuffmanTreeLeaf*; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = const libmaus2::huffman::HuffmanTreeInnerNode*; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 In file included from /usr/arm-linux-gnueabi/include/c++/8/map:61, from ./libmaus2/util/ArgInfo.hpp:24, from test/testutf8split.cpp:21: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = const libmaus2::huffman::HuffmanTreeInnerNode*; _Tp = long long unsigned int; _Compare = std::less; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h: In member function ‘virtual void libmaus2::huffman::HuffmanTreeInnerNode::toDot(std::ostream&) const’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabi/include/c++/8/map:60, from ./libmaus2/util/ArgInfo.hpp:24, from test/testutf8split.cpp:21: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h: In member function ‘std::pair std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = long long int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:2149:5: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 In file included from /usr/arm-linux-gnueabi/include/c++/8/map:61, from ./libmaus2/util/ArgInfo.hpp:24, from test/testutf8split.cpp:21: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h: In member function ‘virtual std::ostream& libmaus2::util::FileTempFileContainer::getOutputTempFile(uint64_t)’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h: In member function ‘virtual std::ostream& libmaus2::util::FileTempFileContainer::openOutputTempFile(uint64_t)’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabi/include/c++/8/map:60, from ./libmaus2/util/ArgInfo.hpp:24, from test/testutf8split.cpp:21: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/map:61, from ./libmaus2/util/ArgInfo.hpp:24, from test/testutf8split.cpp:21: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h: In member function ‘virtual std::istream& libmaus2::util::FileTempFileContainer::openInputTempFile(uint64_t)’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h: In constructor ‘libmaus2::wavelet::ImpExternalWaveletGeneratorHuffman::ImpExternalWaveletGeneratorHuffman(const libmaus2::huffman::HuffmanTreeNode*, libmaus2::util::TempFileContainer&)’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testutf8split test/testutf8split-testutf8split.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/arm-linux-gnueabi -lz libtool: link: arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testutf8split test/testutf8split-testutf8split.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/arm-linux-gnueabi -lz -fopenmp -pthread arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testcirchash-testcirchash.o `test -f 'test/testcirchash.cpp' || echo './'`test/testcirchash.cpp In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testcirchash.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::ReadGroup&}; _Tp = libmaus2::bambam::ReadGroup; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector > >’} changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from ./libmaus2/bambam/BamHeader.hpp:35, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testcirchash.cpp:20: ./libmaus2/hashing/ConstantStringHash.hpp: In constructor ‘libmaus2::hashing::ConstantStringHash::ConstantStringHash(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]’: ./libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 ConstantStringHash(iterator ita, iterator ite, uint64_t const maxn = 64*1024) ^~~~~~~~~~~~~~~~~~ ./libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testcirchash.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_comp_val >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testcirchash.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::trie::LinearTrieStateBase}; _Tp = libmaus2::trie::LinearTrieStateBase; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testcirchash.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testcirchash.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testcirchash.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In constructor ‘libmaus2::bambam::SnappyAlignmentMergeInput::SnappyAlignmentMergeInput(const std::vector >&, const string&)’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In static member function ‘static std::vector libmaus2::bambam::BamHeader::getReadGroups(const string&)’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testcirchash.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bitbtree::BitBTree<8, 8>::VectorConstructionTuple}; _Tp = libmaus2::bitbtree::BitBTree<8, 8>::VectorConstructionTuple; _Alloc = std::allocator::VectorConstructionTuple>]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::VectorConstructionTuple, std::allocator::VectorConstructionTuple> >::iterator’ {aka ‘__gnu_cxx::__normal_iterator::VectorConstructionTuple*, std::vector::VectorConstructionTuple, std::allocator::VectorConstructionTuple> > >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {libmaus2::bitbtree::BitBTree<8, 8>::VectorConstructionTuple}; _Tp = libmaus2::bitbtree::BitBTree<8, 8>::VectorConstructionTuple; _Alloc = std::allocator::VectorConstructionTuple>]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::VectorConstructionTuple*, std::vector::VectorConstructionTuple, std::allocator::VectorConstructionTuple> > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testcirchash.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In constructor ‘libmaus2::bambam::ProgramHeaderLineSet::ProgramHeaderLineSet(const string&)’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testcirchash.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testcirchash.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testcirchash.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘typename libmaus2::trie::LinearHashTrie<_char_type, id_type>::unique_ptr_type libmaus2::trie::Trie<_char_type>::toLinearHashTrie() const [with id_type = unsigned int; _char_type = char]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testcirchash.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testcirchash.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testcirchash.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void libmaus2::bambam::BamAlignmentSortingCircularHashEntryOverflow::flush()’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testcirchash.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In member function ‘libmaus2::bambam::CircularHashCollatingBamDecoder::OutputBufferEntry* libmaus2::bambam::CircularHashCollatingBamDecoder::process()’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from ./libmaus2/bambam/BamHeader.hpp:35, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testcirchash.cpp:20: ./libmaus2/hashing/ConstantStringHash.hpp: In member function ‘void libmaus2::bambam::BamHeader::initSetup()’: ./libmaus2/hashing/ConstantStringHash.hpp:86:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 shared_ptr_type s(new this_type(ita,ite,maxn)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testcirchash test/testcirchash-testcirchash.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -ldl -lrt -L/usr/lib/arm-linux-gnueabi -lz libtool: link: arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testcirchash test/testcirchash-testcirchash.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -ldl -lrt -L/usr/lib/arm-linux-gnueabi -lz -fopenmp -pthread arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testrmmtree-testrmmtree.o `test -f 'test/testrmmtree.cpp' || echo './'`test/testrmmtree.cpp In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/parallel/PosixSpinLock.hpp:23, from ./libmaus2/aio/StreamLock.hpp:21, from ./libmaus2/autoarray/GenericAlignedAllocation.hpp:23, from ./libmaus2/autoarray/AutoArray.hpp:26, from ./libmaus2/bitio/CompactArray.hpp:23, from ./libmaus2/util/ImpCompactNumberArray.hpp:24, from ./libmaus2/rmq/RMMTree.hpp:22, from test/testrmmtree.cpp:25: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long int&}; _Tp = long long int; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/parallel/PosixSpinLock.hpp:23, from ./libmaus2/aio/StreamLock.hpp:21, from ./libmaus2/autoarray/GenericAlignedAllocation.hpp:23, from ./libmaus2/autoarray/AutoArray.hpp:26, from ./libmaus2/bitio/CompactArray.hpp:23, from ./libmaus2/util/ImpCompactNumberArray.hpp:24, from ./libmaus2/rmq/RMMTree.hpp:22, from test/testrmmtree.cpp:25: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In member function ‘virtual void libmaus2::huffman::HuffmanTreeLeaf::symbolVector(std::vector&) const’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/parallel/PosixSpinLock.hpp:23, from ./libmaus2/aio/StreamLock.hpp:21, from ./libmaus2/autoarray/GenericAlignedAllocation.hpp:23, from ./libmaus2/autoarray/AutoArray.hpp:26, from ./libmaus2/bitio/CompactArray.hpp:23, from ./libmaus2/util/ImpCompactNumberArray.hpp:24, from ./libmaus2/rmq/RMMTree.hpp:22, from test/testrmmtree.cpp:25: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/parallel/PosixSpinLock.hpp:23, from ./libmaus2/aio/StreamLock.hpp:21, from ./libmaus2/autoarray/GenericAlignedAllocation.hpp:23, from ./libmaus2/autoarray/AutoArray.hpp:26, from ./libmaus2/bitio/CompactArray.hpp:23, from ./libmaus2/util/ImpCompactNumberArray.hpp:24, from ./libmaus2/rmq/RMMTree.hpp:22, from test/testrmmtree.cpp:25: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In member function ‘virtual void libmaus2::huffman::HuffmanTreeLeaf::depthVector(std::vector&, uint64_t) const’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In member function ‘uint64_t libmaus2::wavelet::ImpExternalWaveletGeneratorHuffman::createFinalStream(stream_type&) [with stream_type = std::__cxx11::basic_ostringstream]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/parallel/PosixSpinLock.hpp:23, from ./libmaus2/aio/StreamLock.hpp:21, from ./libmaus2/autoarray/GenericAlignedAllocation.hpp:23, from ./libmaus2/autoarray/AutoArray.hpp:26, from ./libmaus2/bitio/CompactArray.hpp:23, from ./libmaus2/util/ImpCompactNumberArray.hpp:24, from ./libmaus2/rmq/RMMTree.hpp:22, from test/testrmmtree.cpp:25: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/map:60, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/bitio/CompactArray.hpp:23, from ./libmaus2/util/ImpCompactNumberArray.hpp:24, from ./libmaus2/rmq/RMMTree.hpp:22, from test/testrmmtree.cpp:25: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = const libmaus2::huffman::HuffmanTreeLeaf*; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = const libmaus2::huffman::HuffmanTreeInnerNode*; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 In file included from /usr/arm-linux-gnueabi/include/c++/8/map:61, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/bitio/CompactArray.hpp:23, from ./libmaus2/util/ImpCompactNumberArray.hpp:24, from ./libmaus2/rmq/RMMTree.hpp:22, from test/testrmmtree.cpp:25: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = const libmaus2::huffman::HuffmanTreeInnerNode*; _Tp = long long unsigned int; _Compare = std::less; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h: In member function ‘virtual void libmaus2::huffman::HuffmanTreeInnerNode::toDot(std::ostream&) const’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabi/include/c++/8/map:60, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/bitio/CompactArray.hpp:23, from ./libmaus2/util/ImpCompactNumberArray.hpp:24, from ./libmaus2/rmq/RMMTree.hpp:22, from test/testrmmtree.cpp:25: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair > >; _KeyOfValue = std::_Select1st > > >; _Compare = std::less; _Alloc = std::allocator > > >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type ‘std::_Rb_tree > >, std::_Select1st > > >, std::less, std::allocator > > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > > >’} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/map:61, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/bitio/CompactArray.hpp:23, from ./libmaus2/util/ImpCompactNumberArray.hpp:24, from ./libmaus2/rmq/RMMTree.hpp:22, from test/testrmmtree.cpp:25: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h: In member function ‘virtual std::ostream& libmaus2::util::MemTempFileContainer::getOutputTempFile(uint64_t)’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree > >, std::_Select1st > > >, std::less, std::allocator > > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > > >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h: In member function ‘virtual std::ostream& libmaus2::util::MemTempFileContainer::openOutputTempFile(uint64_t)’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree > >, std::_Select1st > > >, std::less, std::allocator > > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > > >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree > >, std::_Select1st > > >, std::less, std::allocator > > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > > >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabi/include/c++/8/map:60, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/bitio/CompactArray.hpp:23, from ./libmaus2/util/ImpCompactNumberArray.hpp:24, from ./libmaus2/rmq/RMMTree.hpp:22, from test/testrmmtree.cpp:25: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair > >; _KeyOfValue = std::_Select1st > > >; _Compare = std::less; _Alloc = std::allocator > > >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type ‘std::_Rb_tree > >, std::_Select1st > > >, std::less, std::allocator > > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > > >’} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/map:61, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/bitio/CompactArray.hpp:23, from ./libmaus2/util/ImpCompactNumberArray.hpp:24, from ./libmaus2/rmq/RMMTree.hpp:22, from test/testrmmtree.cpp:25: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h: In member function ‘virtual std::istream& libmaus2::util::MemTempFileContainer::openInputTempFile(uint64_t)’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree > >, std::_Select1st > > >, std::less, std::allocator > > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > > >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree > >, std::_Select1st > > >, std::less, std::allocator > > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > > >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree > >, std::_Select1st > > >, std::less, std::allocator > > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > > >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabi/include/c++/8/map:60, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/bitio/CompactArray.hpp:23, from ./libmaus2/util/ImpCompactNumberArray.hpp:24, from ./libmaus2/rmq/RMMTree.hpp:22, from test/testrmmtree.cpp:25: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h: In member function ‘std::pair std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = long long int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:2149:5: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/map:61, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/bitio/CompactArray.hpp:23, from ./libmaus2/util/ImpCompactNumberArray.hpp:24, from ./libmaus2/rmq/RMMTree.hpp:22, from test/testrmmtree.cpp:25: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h: In constructor ‘libmaus2::wavelet::ImpExternalWaveletGeneratorHuffman::ImpExternalWaveletGeneratorHuffman(const libmaus2::huffman::HuffmanTreeNode*, libmaus2::util::TempFileContainer&)’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testrmmtree test/testrmmtree-testrmmtree.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/arm-linux-gnueabi -lz libtool: link: arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testrmmtree test/testrmmtree-testrmmtree.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/arm-linux-gnueabi -lz -fopenmp -pthread arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testcst-testcst.o `test -f 'test/testcst.cpp' || echo './'`test/testcst.cpp In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/ArgInfo.hpp:25, from test/testcst.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long int&}; _Tp = long long int; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/ArgInfo.hpp:25, from test/testcst.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In member function ‘virtual void libmaus2::huffman::HuffmanTreeLeaf::symbolVector(std::vector&) const’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/ArgInfo.hpp:25, from test/testcst.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/ArgInfo.hpp:25, from test/testcst.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In member function ‘virtual void libmaus2::huffman::HuffmanTreeLeaf::depthVector(std::vector&, uint64_t) const’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/ArgInfo.hpp:25, from test/testcst.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector > >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘virtual void libmaus2::huffman::HuffmanTreeLeaf::symbolDepthVector(std::vector >&, uint64_t) const’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector > >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/map:60, from ./libmaus2/util/ArgInfo.hpp:24, from test/testcst.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = const libmaus2::huffman::HuffmanTreeLeaf*; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = const libmaus2::huffman::HuffmanTreeInnerNode*; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 In file included from /usr/arm-linux-gnueabi/include/c++/8/map:61, from ./libmaus2/util/ArgInfo.hpp:24, from test/testcst.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h: In member function ‘virtual void libmaus2::huffman::HuffmanTreeInnerNode::toDot(std::ostream&) const’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h: In member function ‘void libmaus2::wavelet::ImpHuffmanWaveletTree::init()’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/util/ArgInfo.hpp:35, from test/testcst.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/util/ArgInfo.hpp:35, from test/testcst.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/util/ArgInfo.hpp:35, from test/testcst.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/ArgInfo.hpp:25, from test/testcst.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In function ‘void enumerateMulitpleKMers(const libmaus2::suffixtree::CompressedSuffixTree&, uint64_t)’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/util/ArgInfo.hpp:35, from test/testcst.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ test/testcst.cpp:1097:1: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 } ^ test/testcst.cpp:1097:1: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testcst test/testcst-testcst.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/arm-linux-gnueabi -lz libtool: link: arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testcst test/testcst-testcst.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/arm-linux-gnueabi -lz -fopenmp -pthread arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testbamcmp-testbamcmp.o `test -f 'test/testbamcmp.cpp' || echo './'`test/testbamcmp.cpp In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from test/testbamcmp.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::ReadGroup&}; _Tp = libmaus2::bambam::ReadGroup; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 In file included from ./libmaus2/bambam/BamHeader.hpp:35, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from test/testbamcmp.cpp:19: ./libmaus2/hashing/ConstantStringHash.hpp: In constructor ‘libmaus2::hashing::ConstantStringHash::ConstantStringHash(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]’: ./libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 ConstantStringHash(iterator ita, iterator ite, uint64_t const maxn = 64*1024) ^~~~~~~~~~~~~~~~~~ ./libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from test/testbamcmp.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::trie::LinearTrieStateBase}; _Tp = libmaus2::trie::LinearTrieStateBase; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from test/testbamcmp.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from test/testbamcmp.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In static member function ‘static std::vector libmaus2::bambam::BamHeader::getReadGroups(const string&)’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from test/testbamcmp.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from test/testbamcmp.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from test/testbamcmp.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘typename libmaus2::trie::LinearHashTrie<_char_type, id_type>::unique_ptr_type libmaus2::trie::Trie<_char_type>::toLinearHashTrie() const [with id_type = unsigned int; _char_type = char]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from test/testbamcmp.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from test/testbamcmp.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ./libmaus2/bambam/BamHeader.hpp:35, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from test/testbamcmp.cpp:19: ./libmaus2/hashing/ConstantStringHash.hpp: In member function ‘void libmaus2::bambam::BamHeader::initSetup()’: ./libmaus2/hashing/ConstantStringHash.hpp:86:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 shared_ptr_type s(new this_type(ita,ite,maxn)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from test/testbamcmp.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void libmaus2::bambam::BamHeader::init(stream_type&) [with stream_type = libmaus2::lz::BgzfInflateStream]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testbamcmp test/testbamcmp-testbamcmp.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/arm-linux-gnueabi -lz libtool: link: arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testbamcmp test/testbamcmp-testbamcmp.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/arm-linux-gnueabi -lz -fopenmp -pthread arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testbamdif-testbamdif.o `test -f 'test/testbamdif.cpp' || echo './'`test/testbamdif.cpp In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from test/testbamdif.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::ReadGroup&}; _Tp = libmaus2::bambam::ReadGroup; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 In file included from ./libmaus2/bambam/BamHeader.hpp:35, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from test/testbamdif.cpp:19: ./libmaus2/hashing/ConstantStringHash.hpp: In constructor ‘libmaus2::hashing::ConstantStringHash::ConstantStringHash(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]’: ./libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 ConstantStringHash(iterator ita, iterator ite, uint64_t const maxn = 64*1024) ^~~~~~~~~~~~~~~~~~ ./libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from test/testbamdif.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::trie::LinearTrieStateBase}; _Tp = libmaus2::trie::LinearTrieStateBase; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from test/testbamdif.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from test/testbamdif.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In static member function ‘static std::vector libmaus2::bambam::BamHeader::getReadGroups(const string&)’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from test/testbamdif.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from test/testbamdif.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from test/testbamdif.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘typename libmaus2::trie::LinearHashTrie<_char_type, id_type>::unique_ptr_type libmaus2::trie::Trie<_char_type>::toLinearHashTrie() const [with id_type = unsigned int; _char_type = char]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from test/testbamdif.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from test/testbamdif.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ./libmaus2/bambam/BamHeader.hpp:35, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from test/testbamdif.cpp:19: ./libmaus2/hashing/ConstantStringHash.hpp: In member function ‘void libmaus2::bambam::BamHeader::initSetup()’: ./libmaus2/hashing/ConstantStringHash.hpp:86:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 shared_ptr_type s(new this_type(ita,ite,maxn)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from test/testbamdif.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void libmaus2::bambam::BamHeader::init(stream_type&) [with stream_type = libmaus2::lz::BgzfInflateStream]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testbamdif test/testbamdif-testbamdif.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/arm-linux-gnueabi -lz libtool: link: arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testbamdif test/testbamdif-testbamdif.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/arm-linux-gnueabi -lz -fopenmp -pthread arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testqreorder-testqreorder.o `test -f 'test/testqreorder.cpp' || echo './'`test/testqreorder.cpp In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/util/ArgInfo.hpp:35, from test/testqreorder.cpp:21: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/util/ArgInfo.hpp:35, from test/testqreorder.cpp:21: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/util/ArgInfo.hpp:35, from test/testqreorder.cpp:21: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘std::vector filter(const std::vector&, uint64_t, unsigned int, unsigned int, unsigned int)’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from test/testqreorder.cpp:22: ./libmaus2/fastx/QReorder.hpp: In constructor ‘libmaus2::fastx::QReorder4Set<_k, _value_type>::QReorder4Set(unsigned int, iterator, iterator, unsigned int) [with iterator = __gnu_cxx::__normal_iterator >; unsigned int _k = 2; _value_type = long long unsigned int]’: ./libmaus2/fastx/QReorder.hpp:870:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 QReorder4Set(unsigned int l, iterator ita, iterator ite, unsigned int const rlookupbits) ^~~~~~~~~~~~ ./libmaus2/fastx/QReorder.hpp:870:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 test/testqreorder.cpp: In function ‘void testQReorder4Set()’: test/testqreorder.cpp:102:68: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 libmaus2::fastx::QReorder4Set QR(l,V.begin(),V.end(),2); ^ /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testqreorder test/testqreorder-testqreorder.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/arm-linux-gnueabi -lz libtool: link: arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testqreorder test/testqreorder-testqreorder.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/arm-linux-gnueabi -lz -fopenmp -pthread arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testfqbgzf-testfqbgzf.o `test -f 'test/testfqbgzf.cpp' || echo './'`test/testfqbgzf.cpp In file included from ./libmaus2/fastx/FastQReader.hpp:31, from ./libmaus2/fastx/SocketFastQReader.hpp:23, from test/testfqbgzf.cpp:20: ./libmaus2/fastx/FastInterval.hpp: In static member function ‘static libmaus2::fastx::FastInterval libmaus2::fastx::FastInterval::merge(iterator, iterator) [with iterator = __gnu_cxx::__normal_iterator >]’: ./libmaus2/fastx/FastInterval.hpp:85:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 static FastInterval merge(iterator a, iterator e) ^~~~~ ./libmaus2/fastx/FastInterval.hpp:85:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/ArgInfo.hpp:25, from test/testfqbgzf.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::fastx::FastInterval&}; _Tp = libmaus2::fastx::FastInterval; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::lz::BgzfThreadQueueElement&}; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector >::iterator’ {aka ‘__gnu_cxx::__normal_iterator > >’} changed in GCC 7.1 In file included from /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/util/ArgInfo.hpp:35, from test/testfqbgzf.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Compare = __gnu_cxx::__ops::_Iter_comp_val]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Compare = __gnu_cxx::__ops::_Iter_comp_val]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/ArgInfo.hpp:25, from test/testfqbgzf.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In member function ‘void libmaus2::parallel::TerminatableSynchronousHeap<_value_type, _compare>::enque(libmaus2::parallel::TerminatableSynchronousHeap<_value_type, _compare>::value_type) [with _value_type = libmaus2::lz::BgzfThreadQueueElement; _compare = libmaus2::lz::BgzfThreadQueueElementHeapComparator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/util/ArgInfo.hpp:35, from test/testfqbgzf.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/ArgInfo.hpp:25, from test/testfqbgzf.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In member function ‘virtual void* libmaus2::lz::BgzfDeflateParallelThread::run()’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/util/ArgInfo.hpp:35, from test/testfqbgzf.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/util/ArgInfo.hpp:35, from test/testfqbgzf.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/util/ArgInfo.hpp:35, from test/testfqbgzf.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from test/testfqbgzf.cpp:38: ./libmaus2/clustering/KMeans.hpp: In static member function ‘static std::vector libmaus2::clustering::KMeans::kmeansCore(iterator, uint64_t, uint64_t, bool, uint64_t, double, const dissimilarity_type&) [with iterator = __gnu_cxx::__normal_iterator >; dissimilarity_type = libmaus2::clustering::KMeans::SquareDissimilary]’: ./libmaus2/clustering/KMeans.hpp:371:31: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 static std::vector kmeansCore( ^~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/util/ArgInfo.hpp:35, from test/testfqbgzf.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from test/testfqbgzf.cpp:38: ./libmaus2/clustering/KMeans.hpp: In function ‘int main(int, char**)’: ./libmaus2/clustering/KMeans.hpp:527:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::vector R = kmeansCore(V,n,k,pp,maxloops,ethres,dissimilarity); ^ ./libmaus2/clustering/KMeans.hpp:532:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::vector RC = kmeansCore(V,n,k,pp,maxloops,ethres,dissimilarity); ^~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/ArgInfo.hpp:25, from test/testfqbgzf.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ test/testfqbgzf.cpp:289:75: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 indexCOS << libmaus2::fastx::FastInterval::merge(FIV.begin(),FIV.end()).serialise(); ^ test/testfqbgzf.cpp:299:74: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 indexCOS << libmaus2::fastx::FastInterval::merge(FIV.begin(),FIV.end()).serialise(); ^ /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testfqbgzf test/testfqbgzf-testfqbgzf.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/arm-linux-gnueabi -lz libtool: link: arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testfqbgzf test/testfqbgzf-testfqbgzf.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/arm-linux-gnueabi -lz -fopenmp -pthread arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testoverlap-testoverlap.o `test -f 'test/testoverlap.cpp' || echo './'`test/testoverlap.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testoverlap test/testoverlap-testoverlap.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/arm-linux-gnueabi -lz libtool: link: arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testoverlap test/testoverlap-testoverlap.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/arm-linux-gnueabi -lz -fopenmp -pthread arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testcompactfastrandom-testcompactfastrandom.o `test -f 'test/testcompactfastrandom.cpp' || echo './'`test/testcompactfastrandom.cpp In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StringSerialisation.hpp:27, from ./libmaus2/aio/FileFragment.hpp:26, from ./libmaus2/aio/ReorderConcatGenericInput.hpp:24, from ./libmaus2/fastx/CompactFastDecoder.hpp:23, from test/testcompactfastrandom.cpp:1: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::fastx::FastInterval&}; _Tp = libmaus2::fastx::FastInterval; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::aio::FileFragment}; _Tp = libmaus2::aio::FileFragment; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::fastx::FastInterval}; _Tp = libmaus2::fastx::FastInterval; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In static member function ‘static std::vector libmaus2::fastx::CompactFastDecoder::getDataFragments(const std::vector >&)’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In constructor ‘libmaus2::fastx::CompactFastConcatRandomAccessAdapter::CompactFastConcatRandomAccessAdapter(const std::vector >&)’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/StringSerialisation.hpp:27, from ./libmaus2/aio/FileFragment.hpp:26, from ./libmaus2/aio/ReorderConcatGenericInput.hpp:24, from ./libmaus2/fastx/CompactFastDecoder.hpp:23, from test/testcompactfastrandom.cpp:1: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testcompactfastrandom test/testcompactfastrandom-testcompactfastrandom.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/arm-linux-gnueabi -lz libtool: link: arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testcompactfastrandom test/testcompactfastrandom-testcompactfastrandom.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/arm-linux-gnueabi -lz -fopenmp -pthread arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testbamindex-testbamindex.o `test -f 'test/testbamindex.cpp' || echo './'`test/testbamindex.cpp In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/parallel/PosixSpinLock.hpp:23, from ./libmaus2/aio/StreamLock.hpp:21, from ./libmaus2/autoarray/GenericAlignedAllocation.hpp:23, from ./libmaus2/autoarray/AutoArray.hpp:26, from ./libmaus2/bambam/BamIndexBin.hpp:22, from ./libmaus2/bambam/BamIndexRef.hpp:22, from ./libmaus2/bambam/BamIndex.hpp:22, from test/testbamindex.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::ReadGroup&}; _Tp = libmaus2::bambam::ReadGroup; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::math::IntegerInterval&}; _Tp = libmaus2::math::IntegerInterval; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’} changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector > >’} changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from ./libmaus2/bambam/BamHeader.hpp:35, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamIndexGenerator.hpp:31, from test/testbamindex.cpp:21: ./libmaus2/hashing/ConstantStringHash.hpp: In constructor ‘libmaus2::hashing::ConstantStringHash::ConstantStringHash(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]’: ./libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 ConstantStringHash(iterator ita, iterator ite, uint64_t const maxn = 64*1024) ^~~~~~~~~~~~~~~~~~ ./libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/parallel/PosixSpinLock.hpp:23, from ./libmaus2/aio/StreamLock.hpp:21, from ./libmaus2/autoarray/GenericAlignedAllocation.hpp:23, from ./libmaus2/autoarray/AutoArray.hpp:26, from ./libmaus2/bambam/BamIndexBin.hpp:22, from ./libmaus2/bambam/BamIndexRef.hpp:22, from ./libmaus2/bambam/BamIndex.hpp:22, from test/testbamindex.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::trie::LinearTrieStateBase}; _Tp = libmaus2::trie::LinearTrieStateBase; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from ./libmaus2/bambam/BamIndexBin.hpp:22, from ./libmaus2/bambam/BamIndexRef.hpp:22, from ./libmaus2/bambam/BamIndex.hpp:22, from test/testbamindex.cpp:20: ./libmaus2/autoarray/AutoArray.hpp: In constructor ‘libmaus2::autoarray::AutoArray::AutoArray(uint64_t, bool) [with N = libmaus2::bambam::BamIndexBinChunk; libmaus2::autoarray::alloc_type atype = (libmaus2::autoarray::alloc_type)0; erase_type = libmaus2::autoarray::ArrayErase]’: ./libmaus2/autoarray/AutoArray.hpp:1801:5: warning: ‘’ may be used uninitialized in this function [-Wmaybe-uninitialized] array[i] = N(); ^~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/bambam/BamIndexBin.hpp:22, from ./libmaus2/bambam/BamIndexRef.hpp:22, from ./libmaus2/bambam/BamIndex.hpp:22, from test/testbamindex.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/parallel/PosixSpinLock.hpp:23, from ./libmaus2/aio/StreamLock.hpp:21, from ./libmaus2/autoarray/GenericAlignedAllocation.hpp:23, from ./libmaus2/autoarray/AutoArray.hpp:26, from ./libmaus2/bambam/BamIndexBin.hpp:22, from ./libmaus2/bambam/BamIndexRef.hpp:22, from ./libmaus2/bambam/BamIndex.hpp:22, from test/testbamindex.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In static member function ‘static std::vector libmaus2::bambam::BamHeader::getReadGroups(const string&)’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/bambam/BamIndexBin.hpp:22, from ./libmaus2/bambam/BamIndexRef.hpp:22, from ./libmaus2/bambam/BamIndex.hpp:22, from test/testbamindex.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_val::SingleFileFragmentMergeHeapComparator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_val::SingleFileFragmentMergeHeapComparator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/parallel/PosixSpinLock.hpp:23, from ./libmaus2/aio/StreamLock.hpp:21, from ./libmaus2/autoarray/GenericAlignedAllocation.hpp:23, from ./libmaus2/autoarray/AutoArray.hpp:26, from ./libmaus2/bambam/BamIndexBin.hpp:22, from ./libmaus2/bambam/BamIndexRef.hpp:22, from ./libmaus2/bambam/BamIndex.hpp:22, from test/testbamindex.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/bambam/BamIndexBin.hpp:22, from ./libmaus2/bambam/BamIndexRef.hpp:22, from ./libmaus2/bambam/BamIndex.hpp:22, from test/testbamindex.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::SingleFileFragmentMergeHeapComparator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/parallel/PosixSpinLock.hpp:23, from ./libmaus2/aio/StreamLock.hpp:21, from ./libmaus2/autoarray/GenericAlignedAllocation.hpp:23, from ./libmaus2/autoarray/AutoArray.hpp:26, from ./libmaus2/bambam/BamIndexBin.hpp:22, from ./libmaus2/bambam/BamIndexRef.hpp:22, from ./libmaus2/bambam/BamIndex.hpp:22, from test/testbamindex.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/bambam/BamIndexBin.hpp:22, from ./libmaus2/bambam/BamIndexRef.hpp:22, from ./libmaus2/bambam/BamIndex.hpp:22, from test/testbamindex.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::SingleFileFragmentMergeHeapComparator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/bambam/BamIndexBin.hpp:22, from ./libmaus2/bambam/BamIndexRef.hpp:22, from ./libmaus2/bambam/BamIndex.hpp:22, from test/testbamindex.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/parallel/PosixSpinLock.hpp:23, from ./libmaus2/aio/StreamLock.hpp:21, from ./libmaus2/autoarray/GenericAlignedAllocation.hpp:23, from ./libmaus2/autoarray/AutoArray.hpp:26, from ./libmaus2/bambam/BamIndexBin.hpp:22, from ./libmaus2/bambam/BamIndexRef.hpp:22, from ./libmaus2/bambam/BamIndex.hpp:22, from test/testbamindex.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘typename libmaus2::trie::LinearHashTrie<_char_type, id_type>::unique_ptr_type libmaus2::trie::Trie<_char_type>::toLinearHashTrie() const [with id_type = unsigned int; _char_type = char]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/parallel/PosixSpinLock.hpp:23, from ./libmaus2/aio/StreamLock.hpp:21, from ./libmaus2/autoarray/GenericAlignedAllocation.hpp:23, from ./libmaus2/autoarray/AutoArray.hpp:26, from ./libmaus2/bambam/BamIndexBin.hpp:22, from ./libmaus2/bambam/BamIndexRef.hpp:22, from ./libmaus2/bambam/BamIndex.hpp:22, from test/testbamindex.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/bambam/BamIndexBin.hpp:22, from ./libmaus2/bambam/BamIndexRef.hpp:22, from ./libmaus2/bambam/BamIndex.hpp:22, from test/testbamindex.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ./libmaus2/bambam/BamHeader.hpp:35, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamIndexGenerator.hpp:31, from test/testbamindex.cpp:21: ./libmaus2/hashing/ConstantStringHash.hpp: In member function ‘void libmaus2::bambam::BamHeader::initSetup()’: ./libmaus2/hashing/ConstantStringHash.hpp:86:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 shared_ptr_type s(new this_type(ita,ite,maxn)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/parallel/PosixSpinLock.hpp:23, from ./libmaus2/aio/StreamLock.hpp:21, from ./libmaus2/autoarray/GenericAlignedAllocation.hpp:23, from ./libmaus2/autoarray/AutoArray.hpp:26, from ./libmaus2/bambam/BamIndexBin.hpp:22, from ./libmaus2/bambam/BamIndexRef.hpp:22, from ./libmaus2/bambam/BamIndex.hpp:22, from test/testbamindex.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In member function ‘void libmaus2::bambam::BamIndexGenerator::addBlock(const uint8_t*, uint64_t, uint64_t)’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/parallel/PosixSpinLock.hpp:23, from ./libmaus2/aio/StreamLock.hpp:21, from ./libmaus2/autoarray/GenericAlignedAllocation.hpp:23, from ./libmaus2/autoarray/AutoArray.hpp:26, from ./libmaus2/bambam/BamIndexBin.hpp:22, from ./libmaus2/bambam/BamIndexRef.hpp:22, from ./libmaus2/bambam/BamIndex.hpp:22, from test/testbamindex.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void libmaus2::bambam::BamHeader::init(stream_type&) [with stream_type = libmaus2::lz::BgzfInflateStream]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testbamindex test/testbamindex-testbamindex.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/arm-linux-gnueabi -lz libtool: link: arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testbamindex test/testbamindex-testbamindex.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/arm-linux-gnueabi -lz -fopenmp -pthread arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testbamrewrite-testbamrewrite.o `test -f 'test/testbamrewrite.cpp' || echo './'`test/testbamrewrite.cpp In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/ArgInfo.hpp:25, from test/testbamrewrite.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from ./libmaus2/bambam/BamHeader.hpp:35, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from ./libmaus2/bambam/BamParallelRewrite.hpp:23, from test/testbamrewrite.cpp:21: ./libmaus2/hashing/ConstantStringHash.hpp: In constructor ‘libmaus2::hashing::ConstantStringHash::ConstantStringHash(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]’: ./libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 ConstantStringHash(iterator ita, iterator ite, uint64_t const maxn = 64*1024) ^~~~~~~~~~~~~~~~~~ ./libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/ArgInfo.hpp:25, from test/testbamrewrite.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::lz::BgzfThreadQueueElement&}; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector >::iterator’ {aka ‘__gnu_cxx::__normal_iterator > >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/util/ArgInfo.hpp:35, from test/testbamrewrite.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Compare = __gnu_cxx::__ops::_Iter_comp_val]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/ArgInfo.hpp:25, from test/testbamrewrite.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In member function ‘void libmaus2::parallel::TerminatableSynchronousHeap<_value_type, _compare>::enque(libmaus2::parallel::TerminatableSynchronousHeap<_value_type, _compare>::value_type) [with _value_type = libmaus2::lz::BgzfThreadQueueElement; _compare = libmaus2::lz::BgzfThreadQueueElementHeapComparator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/util/ArgInfo.hpp:35, from test/testbamrewrite.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Compare = __gnu_cxx::__ops::_Iter_comp_val]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/util/ArgInfo.hpp:35, from test/testbamrewrite.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/util/ArgInfo.hpp:35, from test/testbamrewrite.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Compare = __gnu_cxx::__ops::_Iter_comp_val]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/ArgInfo.hpp:25, from test/testbamrewrite.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In member function ‘virtual void* libmaus2::lz::BgzfInflateDeflateParallelThread::run()’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/ArgInfo.hpp:25, from test/testbamrewrite.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::ReadGroup&}; _Tp = libmaus2::bambam::ReadGroup; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/ArgInfo.hpp:25, from test/testbamrewrite.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In static member function ‘static std::vector libmaus2::bambam::BamHeader::getReadGroups(const string&)’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/util/ArgInfo.hpp:35, from test/testbamrewrite.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/util/ArgInfo.hpp:35, from test/testbamrewrite.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/ArgInfo.hpp:25, from test/testbamrewrite.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In member function ‘void libmaus2::trie::LinearHashTrie<_char_type, _id_type>::fillDepthParent() [with _char_type = char; _id_type = unsigned int]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/util/ArgInfo.hpp:35, from test/testbamrewrite.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:63, from ./libmaus2/util/ArgInfo.hpp:25, from test/testbamrewrite.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator*>; _ForwardIterator = libmaus2::trie::LinearTrieStateBase*; bool _TrivialValueTypes = false]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_uninitialized.h:76:9: note: parameter passing for argument of type ‘std::move_iterator*>’ changed in GCC 7.1 __uninit_copy(_InputIterator __first, _InputIterator __last, ^~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_uninitialized.h:76:9: note: parameter passing for argument of type ‘std::move_iterator*>’ changed in GCC 7.1 In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/ArgInfo.hpp:25, from test/testbamrewrite.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::trie::LinearTrieStateBase}; _Tp = libmaus2::trie::LinearTrieStateBase; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:63, from ./libmaus2/util/ArgInfo.hpp:25, from test/testbamrewrite.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_uninitialized.h:134:15: note: parameter passing for argument of type ‘std::move_iterator*>’ changed in GCC 7.1 return std::__uninitialized_copy<__is_trivial(_ValueType1) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ && __is_trivial(_ValueType2) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ && __assignable>:: ~~~~~~~~~~~~~~~~~~ __uninit_copy(__first, __last, __result); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_uninitialized.h:134:15: note: parameter passing for argument of type ‘std::move_iterator*>’ changed in GCC 7.1 return std::__uninitialized_copy<__is_trivial(_ValueType1) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ && __is_trivial(_ValueType2) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ && __assignable>:: ~~~~~~~~~~~~~~~~~~ __uninit_copy(__first, __last, __result); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/ArgInfo.hpp:25, from test/testbamrewrite.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘typename libmaus2::trie::LinearHashTrie<_char_type, id_type>::unique_ptr_type libmaus2::trie::Trie<_char_type>::toLinearHashTrie() const [with id_type = unsigned int; _char_type = char]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/ArgInfo.hpp:25, from test/testbamrewrite.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from ./libmaus2/bambam/BamHeader.hpp:35, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from ./libmaus2/bambam/BamParallelRewrite.hpp:23, from test/testbamrewrite.cpp:21: ./libmaus2/hashing/ConstantStringHash.hpp: In member function ‘void libmaus2::bambam::BamHeader::initSetup()’: ./libmaus2/hashing/ConstantStringHash.hpp:86:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 shared_ptr_type s(new this_type(ita,ite,maxn)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/ArgInfo.hpp:25, from test/testbamrewrite.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void libmaus2::bambam::BamHeader::init(stream_type&) [with stream_type = libmaus2::lz::BgzfInflateDeflateParallelInputStream]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testbamrewrite test/testbamrewrite-testbamrewrite.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/arm-linux-gnueabi -lz libtool: link: arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testbamrewrite test/testbamrewrite-testbamrewrite.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/arm-linux-gnueabi -lz -fopenmp -pthread arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testfastqstream-testfastqstream.o `test -f 'test/testfastqstream.cpp' || echo './'`test/testfastqstream.cpp In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/parallel/PosixSpinLock.hpp:23, from ./libmaus2/aio/StreamLock.hpp:21, from ./libmaus2/autoarray/GenericAlignedAllocation.hpp:23, from ./libmaus2/autoarray/AutoArray.hpp:26, from ./libmaus2/fastx/CharBuffer.hpp:22, from ./libmaus2/aio/SynchronousFastReaderBase.hpp:24, from ./libmaus2/fastx/FastQReader.hpp:27, from ./libmaus2/fastx/StreamFastQReader.hpp:23, from test/testfastqstream.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::fastx::FastInterval}; _Tp = libmaus2::fastx::FastInterval; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In function ‘void countReadsGzipFastqBlocks(const string&, const string&)’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In function ‘void decodeGzipFastqBlocks(const string&, const string&)’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testfastqstream test/testfastqstream-testfastqstream.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/arm-linux-gnueabi -lz libtool: link: arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testfastqstream test/testfastqstream-testfastqstream.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/arm-linux-gnueabi -lz -fopenmp -pthread arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testsort-testsort.o `test -f 'test/testsort.cpp' || echo './'`test/testsort.cpp In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/GetFileSize.hpp:25, from ./libmaus2/aio/SynchronousGenericInput.hpp:23, from ./libmaus2/huffman/LFSupportBitDecoder.hpp:21, from ./libmaus2/huffman/LFSupportDecoder.hpp:21, from test/testsort.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/GetFileSize.hpp:25, from ./libmaus2/aio/SynchronousGenericInput.hpp:23, from ./libmaus2/huffman/LFSupportBitDecoder.hpp:21, from ./libmaus2/huffman/LFSupportDecoder.hpp:21, from test/testsort.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In member function ‘virtual void libmaus2::huffman::HuffmanTreeLeaf::depthVector(std::vector&, uint64_t) const’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/GetFileSize.hpp:25, from ./libmaus2/aio/SynchronousGenericInput.hpp:23, from ./libmaus2/huffman/LFSupportBitDecoder.hpp:21, from ./libmaus2/huffman/LFSupportDecoder.hpp:21, from test/testsort.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long int&}; _Tp = long long int; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/GetFileSize.hpp:25, from ./libmaus2/aio/SynchronousGenericInput.hpp:23, from ./libmaus2/huffman/LFSupportBitDecoder.hpp:21, from ./libmaus2/huffman/LFSupportDecoder.hpp:21, from test/testsort.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In member function ‘virtual void libmaus2::huffman::HuffmanTreeLeaf::symbolVector(std::vector&) const’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/GetFileSize.hpp:25, from ./libmaus2/aio/SynchronousGenericInput.hpp:23, from ./libmaus2/huffman/LFSupportBitDecoder.hpp:21, from ./libmaus2/huffman/LFSupportDecoder.hpp:21, from test/testsort.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector > >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/GetFileSize.hpp:25, from ./libmaus2/aio/SynchronousGenericInput.hpp:23, from ./libmaus2/huffman/LFSupportBitDecoder.hpp:21, from ./libmaus2/huffman/LFSupportDecoder.hpp:21, from test/testsort.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In constructor ‘libmaus2::gamma::GammaPDIndexDecoder::GammaPDIndexDecoder(const std::vector >&)’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In constructor ‘libmaus2::huffman::LFRankPosIndexDecoder::LFRankPosIndexDecoder(const std::vector >&)’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/map:60, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/util/GetFileSize.hpp:26, from ./libmaus2/aio/SynchronousGenericInput.hpp:23, from ./libmaus2/huffman/LFSupportBitDecoder.hpp:21, from ./libmaus2/huffman/LFSupportDecoder.hpp:21, from test/testsort.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = const libmaus2::huffman::HuffmanTreeLeaf*; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = const libmaus2::huffman::HuffmanTreeInnerNode*; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 In file included from /usr/arm-linux-gnueabi/include/c++/8/map:61, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/util/GetFileSize.hpp:26, from ./libmaus2/aio/SynchronousGenericInput.hpp:23, from ./libmaus2/huffman/LFSupportBitDecoder.hpp:21, from ./libmaus2/huffman/LFSupportDecoder.hpp:21, from test/testsort.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h: In member function ‘virtual void libmaus2::huffman::HuffmanTreeInnerNode::toDot(std::ostream&) const’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/util/GetFileSize.hpp:26, from ./libmaus2/aio/SynchronousGenericInput.hpp:23, from ./libmaus2/huffman/LFSupportBitDecoder.hpp:21, from ./libmaus2/huffman/LFSupportDecoder.hpp:21, from test/testsort.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 __move_median_to_first(_Iterator __result,_Iterator __a, _Iterator __b, ^~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 __move_median_to_first(_Iterator __result,_Iterator __a, _Iterator __b, ^~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Val_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/GetFileSize.hpp:25, from ./libmaus2/aio/SynchronousGenericInput.hpp:23, from ./libmaus2/huffman/LFSupportBitDecoder.hpp:21, from ./libmaus2/huffman/LFSupportDecoder.hpp:21, from test/testsort.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::sorting::InPlaceParallelSort::MergeStepRecSerialRequest, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>}; _Tp = libmaus2::sorting::InPlaceParallelSort::MergeStepRecSerialRequest, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>; _Alloc = std::allocator, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort> >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>, std::allocator, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort> > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>*, std::vector, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>, std::allocator, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort> > > >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In static member function ‘static void libmaus2::sorting::InPlaceParallelSort::mergestepRecLevel(iterator, uint64_t, uint64_t, order_type, base_sort&, int, int, std::vector >&, uint64_t) [with iterator = unsigned int*; order_type = std::less; base_sort = libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>*, std::vector, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>, std::allocator, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort> > > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::sorting::InPlaceParallelSort::MergeStepRecSerialRequest*, libmaus2::sorting::PairFileSorting::SecondComp, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>}; _Tp = libmaus2::sorting::InPlaceParallelSort::MergeStepRecSerialRequest*, libmaus2::sorting::PairFileSorting::SecondComp, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>; _Alloc = std::allocator*, libmaus2::sorting::PairFileSorting::SecondComp, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort> >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector*, libmaus2::sorting::PairFileSorting::SecondComp, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>, std::allocator*, libmaus2::sorting::PairFileSorting::SecondComp, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort> > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, libmaus2::sorting::PairFileSorting::SecondComp, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>*, std::vector*, libmaus2::sorting::PairFileSorting::SecondComp, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>, std::allocator*, libmaus2::sorting::PairFileSorting::SecondComp, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort> > > >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::sorting::InPlaceParallelSort::MergeStepRecSerialRequest*, libmaus2::sorting::PairFileSorting::FirstComp, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>}; _Tp = libmaus2::sorting::InPlaceParallelSort::MergeStepRecSerialRequest*, libmaus2::sorting::PairFileSorting::FirstComp, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>; _Alloc = std::allocator*, libmaus2::sorting::PairFileSorting::FirstComp, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort> >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector*, libmaus2::sorting::PairFileSorting::FirstComp, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>, std::allocator*, libmaus2::sorting::PairFileSorting::FirstComp, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort> > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, libmaus2::sorting::PairFileSorting::FirstComp, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>*, std::vector*, libmaus2::sorting::PairFileSorting::FirstComp, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>, std::allocator*, libmaus2::sorting::PairFileSorting::FirstComp, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort> > > >’} changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::sorting::PairFileSorting::Triple&}; _Tp = libmaus2::sorting::PairFileSorting::Triple; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector > >’} changed in GCC 7.1 In file included from /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/util/GetFileSize.hpp:26, from ./libmaus2/aio/SynchronousGenericInput.hpp:23, from ./libmaus2/huffman/LFSupportBitDecoder.hpp:21, from ./libmaus2/huffman/LFSupportDecoder.hpp:21, from test/testsort.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = libmaus2::sorting::PairFileSorting::Triple; _Compare = __gnu_cxx::__ops::_Iter_comp_val >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/GetFileSize.hpp:25, from ./libmaus2/aio/SynchronousGenericInput.hpp:23, from ./libmaus2/huffman/LFSupportBitDecoder.hpp:21, from ./libmaus2/huffman/LFSupportDecoder.hpp:21, from test/testsort.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In member function ‘void std::priority_queue<_Tp, _Sequence, _Compare>::push(const value_type&) [with _Tp = libmaus2::sorting::PairFileSorting::Triple; _Sequence = std::vector >; _Compare = libmaus2::sorting::PairFileSorting::TripleSecondComparator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/util/GetFileSize.hpp:26, from ./libmaus2/aio/SynchronousGenericInput.hpp:23, from ./libmaus2/huffman/LFSupportBitDecoder.hpp:21, from ./libmaus2/huffman/LFSupportDecoder.hpp:21, from test/testsort.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = libmaus2::sorting::PairFileSorting::Triple; _Compare = __gnu_cxx::__ops::_Iter_comp_val >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/GetFileSize.hpp:25, from ./libmaus2/aio/SynchronousGenericInput.hpp:23, from ./libmaus2/huffman/LFSupportBitDecoder.hpp:21, from ./libmaus2/huffman/LFSupportDecoder.hpp:21, from test/testsort.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In member function ‘void std::priority_queue<_Tp, _Sequence, _Compare>::push(const value_type&) [with _Tp = libmaus2::sorting::PairFileSorting::Triple; _Sequence = std::vector >; _Compare = libmaus2::sorting::PairFileSorting::TripleFirstComparator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/GetFileSize.hpp:25, from ./libmaus2/aio/SynchronousGenericInput.hpp:23, from ./libmaus2/huffman/LFSupportBitDecoder.hpp:21, from ./libmaus2/huffman/LFSupportDecoder.hpp:21, from test/testsort.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In static member function ‘static void libmaus2::sorting::InPlaceParallelSort::mergestepRecLevel(iterator, uint64_t, uint64_t, order_type, base_sort&, int, int, std::vector >&, uint64_t) [with iterator = std::pair*; order_type = libmaus2::sorting::PairFileSorting::SecondComp; base_sort = libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, libmaus2::sorting::PairFileSorting::SecondComp, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>*, std::vector*, libmaus2::sorting::PairFileSorting::SecondComp, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>, std::allocator*, libmaus2::sorting::PairFileSorting::SecondComp, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort> > > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In static member function ‘static void libmaus2::sorting::InPlaceParallelSort::mergestepRecLevel(iterator, uint64_t, uint64_t, order_type, base_sort&, int, int, std::vector >&, uint64_t) [with iterator = std::pair*; order_type = libmaus2::sorting::PairFileSorting::FirstComp; base_sort = libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, libmaus2::sorting::PairFileSorting::FirstComp, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>*, std::vector*, libmaus2::sorting::PairFileSorting::FirstComp, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>, std::allocator*, libmaus2::sorting::PairFileSorting::FirstComp, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort> > > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/util/GetFileSize.hpp:26, from ./libmaus2/aio/SynchronousGenericInput.hpp:23, from ./libmaus2/huffman/LFSupportBitDecoder.hpp:21, from ./libmaus2/huffman/LFSupportDecoder.hpp:21, from test/testsort.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = libmaus2::sorting::PairFileSorting::Triple; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/GetFileSize.hpp:25, from ./libmaus2/aio/SynchronousGenericInput.hpp:23, from ./libmaus2/huffman/LFSupportBitDecoder.hpp:21, from ./libmaus2/huffman/LFSupportDecoder.hpp:21, from test/testsort.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In static member function ‘static uint64_t libmaus2::sorting::PairFileSorting::reduce(const string&, uint64_t, uint64_t, out_type&, std::ostream*) [with comparator_type = libmaus2::sorting::PairFileSorting::TripleSecondComparator; out_type = libmaus2::aio::SynchronousGenericOutput]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/util/GetFileSize.hpp:26, from ./libmaus2/aio/SynchronousGenericInput.hpp:23, from ./libmaus2/huffman/LFSupportBitDecoder.hpp:21, from ./libmaus2/huffman/LFSupportDecoder.hpp:21, from test/testsort.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = libmaus2::sorting::PairFileSorting::Triple; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/GetFileSize.hpp:25, from ./libmaus2/aio/SynchronousGenericInput.hpp:23, from ./libmaus2/huffman/LFSupportBitDecoder.hpp:21, from ./libmaus2/huffman/LFSupportDecoder.hpp:21, from test/testsort.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In static member function ‘static uint64_t libmaus2::sorting::PairFileSorting::reduce(const string&, uint64_t, uint64_t, out_type&, std::ostream*) [with comparator_type = libmaus2::sorting::PairFileSorting::TripleFirstComparator; out_type = libmaus2::aio::SynchronousGenericOutput]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/util/GetFileSize.hpp:26, from ./libmaus2/aio/SynchronousGenericInput.hpp:23, from ./libmaus2/huffman/LFSupportBitDecoder.hpp:21, from ./libmaus2/huffman/LFSupportDecoder.hpp:21, from test/testsort.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/util/GetFileSize.hpp:26, from ./libmaus2/aio/SynchronousGenericInput.hpp:23, from ./libmaus2/huffman/LFSupportBitDecoder.hpp:21, from ./libmaus2/huffman/LFSupportDecoder.hpp:21, from test/testsort.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 std::__move_median_to_first(__first, __first + 1, __mid, __last - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/util/GetFileSize.hpp:26, from ./libmaus2/aio/SynchronousGenericInput.hpp:23, from ./libmaus2/huffman/LFSupportBitDecoder.hpp:21, from ./libmaus2/huffman/LFSupportDecoder.hpp:21, from test/testsort.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/util/GetFileSize.hpp:26, from ./libmaus2/aio/SynchronousGenericInput.hpp:23, from ./libmaus2/huffman/LFSupportBitDecoder.hpp:21, from ./libmaus2/huffman/LFSupportDecoder.hpp:21, from test/testsort.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 __heap_select(_RandomAccessIterator __first, ^~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 std::__move_median_to_first(__first, __first + 1, __mid, __last - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1933:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 std::__heap_select(__first, __middle, __last, __comp); ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void testpairfilesortingSecond(uint64_t)’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void testpairfilesorting(uint64_t)’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/GetFileSize.hpp:25, from ./libmaus2/aio/SynchronousGenericInput.hpp:23, from ./libmaus2/huffman/LFSupportBitDecoder.hpp:21, from ./libmaus2/huffman/LFSupportDecoder.hpp:21, from test/testsort.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::sorting::ParallelStableSort::MergeLevel >}; _Tp = libmaus2::sorting::ParallelStableSort::MergeLevel >; _Alloc = std::allocator > >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector >, std::allocator > > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In constructor ‘libmaus2::sorting::ParallelStableSort::ParallelSortControl<_iterator, _order_type>::ParallelSortControl(libmaus2::sorting::ParallelStableSort::ParallelSortControl<_iterator, _order_type>::iterator, libmaus2::sorting::ParallelStableSort::ParallelSortControl<_iterator, _order_type>::iterator, libmaus2::sorting::ParallelStableSort::ParallelSortControl<_iterator, _order_type>::iterator, libmaus2::sorting::ParallelStableSort::ParallelSortControl<_iterator, _order_type>::iterator, const order_type&, uint64_t, bool) [with _iterator = long long unsigned int*; _order_type = std::less]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testsort test/testsort-testsort.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/arm-linux-gnueabi -lz libtool: link: arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testsort test/testsort-testsort.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/arm-linux-gnueabi -lz -fopenmp -pthread arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testexternalsort-testexternalsort.o `test -f 'test/testexternalsort.cpp' || echo './'`test/testexternalsort.cpp In file included from /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/aio/BufferedOutput.hpp:23, from ./libmaus2/sorting/MergingReadBack.hpp:27, from ./libmaus2/sorting/SortingBufferedOutputFile.hpp:22, from test/testexternalsort.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_val >::HeapOrderAdapter>]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >::HeapOrderAdapter>]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/parallel/PosixSpinLock.hpp:23, from ./libmaus2/aio/StreamLock.hpp:21, from ./libmaus2/autoarray/GenericAlignedAllocation.hpp:23, from ./libmaus2/autoarray/AutoArray.hpp:26, from ./libmaus2/aio/BufferedOutput.hpp:23, from ./libmaus2/sorting/MergingReadBack.hpp:27, from ./libmaus2/sorting/SortingBufferedOutputFile.hpp:22, from test/testexternalsort.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector > >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In constructor ‘libmaus2::sorting::MergingReadBack<_data_type, _order_type>::MergingReadBack(const string&, const std::vector&, uint64_t, uint64_t) [with _data_type = long long unsigned int; _order_type = std::less]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In static member function ‘static std::vector libmaus2::sorting::MergingReadBack<_data_type, _order_type>::mergeStep(const string&, const std::vector&, uint64_t, uint64_t) [with _data_type = long long unsigned int; _order_type = std::less]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In function ‘int main()’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testexternalsort test/testexternalsort-testexternalsort.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/arm-linux-gnueabi -lz libtool: link: arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testexternalsort test/testexternalsort-testexternalsort.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/arm-linux-gnueabi -lz -fopenmp -pthread arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testcollatespeed-testcollatespeed.o `test -f 'test/testcollatespeed.cpp' || echo './'`test/testcollatespeed.cpp In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/ArgInfo.hpp:25, from test/testcollatespeed.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::ReadGroup&}; _Tp = libmaus2::bambam::ReadGroup; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector > >’} changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 In file included from ./libmaus2/bambam/BamHeader.hpp:35, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from test/testcollatespeed.cpp:21: ./libmaus2/hashing/ConstantStringHash.hpp: In constructor ‘libmaus2::hashing::ConstantStringHash::ConstantStringHash(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]’: ./libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 ConstantStringHash(iterator ita, iterator ite, uint64_t const maxn = 64*1024) ^~~~~~~~~~~~~~~~~~ ./libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/util/ArgInfo.hpp:35, from test/testcollatespeed.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_comp_val >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/ArgInfo.hpp:25, from test/testcollatespeed.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::trie::LinearTrieStateBase}; _Tp = libmaus2::trie::LinearTrieStateBase; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/util/ArgInfo.hpp:35, from test/testcollatespeed.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/util/ArgInfo.hpp:35, from test/testcollatespeed.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/ArgInfo.hpp:25, from test/testcollatespeed.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In constructor ‘libmaus2::bambam::SnappyAlignmentMergeInput::SnappyAlignmentMergeInput(const std::vector >&, const string&)’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In static member function ‘static std::vector libmaus2::bambam::BamHeader::getReadGroups(const string&)’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/ArgInfo.hpp:25, from test/testcollatespeed.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bitbtree::BitBTree<8, 8>::VectorConstructionTuple}; _Tp = libmaus2::bitbtree::BitBTree<8, 8>::VectorConstructionTuple; _Alloc = std::allocator::VectorConstructionTuple>]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::VectorConstructionTuple, std::allocator::VectorConstructionTuple> >::iterator’ {aka ‘__gnu_cxx::__normal_iterator::VectorConstructionTuple*, std::vector::VectorConstructionTuple, std::allocator::VectorConstructionTuple> > >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {libmaus2::bitbtree::BitBTree<8, 8>::VectorConstructionTuple}; _Tp = libmaus2::bitbtree::BitBTree<8, 8>::VectorConstructionTuple; _Alloc = std::allocator::VectorConstructionTuple>]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::VectorConstructionTuple*, std::vector::VectorConstructionTuple, std::allocator::VectorConstructionTuple> > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/util/ArgInfo.hpp:35, from test/testcollatespeed.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/util/ArgInfo.hpp:35, from test/testcollatespeed.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/ArgInfo.hpp:25, from test/testcollatespeed.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘typename libmaus2::trie::LinearHashTrie<_char_type, id_type>::unique_ptr_type libmaus2::trie::Trie<_char_type>::toLinearHashTrie() const [with id_type = unsigned int; _char_type = char]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/ArgInfo.hpp:25, from test/testcollatespeed.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/util/ArgInfo.hpp:35, from test/testcollatespeed.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/ArgInfo.hpp:25, from test/testcollatespeed.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void libmaus2::bambam::BamAlignmentSortingCircularHashEntryOverflow::flush()’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/ArgInfo.hpp:25, from test/testcollatespeed.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In member function ‘libmaus2::bambam::CircularHashCollatingBamDecoder::OutputBufferEntry* libmaus2::bambam::CircularHashCollatingBamDecoder::process()’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from ./libmaus2/bambam/BamHeader.hpp:35, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from test/testcollatespeed.cpp:21: ./libmaus2/hashing/ConstantStringHash.hpp: In member function ‘void libmaus2::bambam::BamHeader::initSetup()’: ./libmaus2/hashing/ConstantStringHash.hpp:86:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 shared_ptr_type s(new this_type(ita,ite,maxn)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/ArgInfo.hpp:25, from test/testcollatespeed.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void libmaus2::bambam::BamHeader::init(stream_type&) [with stream_type = libmaus2::lz::BgzfInflateStream]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testcollatespeed test/testcollatespeed-testcollatespeed.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -ldl -lrt -L/usr/lib/arm-linux-gnueabi -lz libtool: link: arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testcollatespeed test/testcollatespeed-testcollatespeed.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -ldl -lrt -L/usr/lib/arm-linux-gnueabi -lz -fopenmp -pthread arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testbamheaderparser-testbamheaderparser.o `test -f 'test/testbamheaderparser.cpp' || echo './'`test/testbamheaderparser.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testbamheaderparser test/testbamheaderparser-testbamheaderparser.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/arm-linux-gnueabi -lz libtool: link: arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testbamheaderparser test/testbamheaderparser-testbamheaderparser.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/arm-linux-gnueabi -lz -fopenmp -pthread arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testbammergecoordinate-testbammergecoordinate.o `test -f 'test/testbammergecoordinate.cpp' || echo './'`test/testbammergecoordinate.cpp In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/ArgInfo.hpp:25, from test/testbammergecoordinate.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::ReadGroup&}; _Tp = libmaus2::bambam::ReadGroup; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/ArgInfo.hpp:25, from test/testbammergecoordinate.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/ArgInfo.hpp:25, from test/testbammergecoordinate.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::pair&}; _Tp = std::pair; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector > >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector > >’} changed in GCC 7.1 In file included from ./libmaus2/bambam/BamHeader.hpp:35, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamCatHeader.hpp:22, from ./libmaus2/bambam/BamMergeCoordinate.hpp:22, from test/testbammergecoordinate.cpp:20: ./libmaus2/hashing/ConstantStringHash.hpp: In constructor ‘libmaus2::hashing::ConstantStringHash::ConstantStringHash(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]’: ./libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 ConstantStringHash(iterator ita, iterator ite, uint64_t const maxn = 64*1024) ^~~~~~~~~~~~~~~~~~ ./libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/ArgInfo.hpp:25, from test/testbammergecoordinate.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::BamAlignmentDecoderInfo}; _Tp = libmaus2::bambam::BamAlignmentDecoderInfo; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In static member function ‘static std::vector libmaus2::bambam::BamAlignmentDecoderInfo::filenameToInfo(const std::vector >&)’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/map:60, from ./libmaus2/util/ArgInfo.hpp:24, from test/testbammergecoordinate.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h: In member function ‘void std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_erase_aux(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator) [with _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:2489:5: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:2489:5: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/map:61, from ./libmaus2/util/ArgInfo.hpp:24, from test/testbammergecoordinate.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h: In member function ‘virtual void libmaus2::parallel::SimpleThreadPool::setTaskId(uint64_t, uint64_t)’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/ArgInfo.hpp:25, from test/testbammergecoordinate.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::trie::LinearTrieStateBase}; _Tp = libmaus2::trie::LinearTrieStateBase; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/util/ArgInfo.hpp:35, from test/testbammergecoordinate.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/arm-linux-gnueabi/include/c++/8/map:60, from ./libmaus2/util/ArgInfo.hpp:24, from test/testbammergecoordinate.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/map:61, from ./libmaus2/util/ArgInfo.hpp:24, from test/testbammergecoordinate.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::set; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/ArgInfo.hpp:25, from test/testbammergecoordinate.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In static member function ‘static std::vector libmaus2::bambam::BamHeader::getReadGroups(const string&)’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/map:61, from ./libmaus2/util/ArgInfo.hpp:24, from test/testbammergecoordinate.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h: In member function ‘virtual void* libmaus2::parallel::SimpleThreadPoolThread::run()’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/util/ArgInfo.hpp:35, from test/testbammergecoordinate.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 __move_median_to_first(_Iterator __result,_Iterator __a, _Iterator __b, ^~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Val_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/ArgInfo.hpp:25, from test/testbammergecoordinate.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::Chromosome&}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/util/ArgInfo.hpp:35, from test/testbammergecoordinate.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_comp_val]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/ArgInfo.hpp:25, from test/testbammergecoordinate.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In member function ‘void libmaus2::bambam::BamMergeTemplate<_heap_comparator_type, _sort_check_type>::init() [with _heap_comparator_type = libmaus2::bambam::BamMergeCoordinateHeapComparator; _sort_check_type = libmaus2::bambam::BamCatHeader::IsCoordinateSorted]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/util/ArgInfo.hpp:35, from test/testbammergecoordinate.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 __move_median_to_first(_Iterator __result,_Iterator __a, _Iterator __b, ^~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘std::pair std::__equal_range(_ForwardIterator, _ForwardIterator, const _Tp&, _CompareItTp, _CompareTpIt) [with _ForwardIterator = __gnu_cxx::__normal_iterator >; _Tp = libmaus2::bambam::Chromosome; _CompareItTp = __gnu_cxx::__ops::_Iter_comp_val; _CompareTpIt = __gnu_cxx::__ops::_Val_comp_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:2124:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __equal_range(_ForwardIterator __first, _ForwardIterator __last, ^~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:2124:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In constructor ‘libmaus2::bambam::ChromosomeVectorMerge::ChromosomeVectorMerge(const std::vector*>&, bool)’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:2228:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 return std::__equal_range(__first, __last, __val, ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__iter_comp_val(__comp), ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__val_comp_iter(__comp)); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:2228:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 return std::__equal_range(__first, __last, __val, ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__iter_comp_val(__comp), ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__val_comp_iter(__comp)); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/map:61, from ./libmaus2/util/ArgInfo.hpp:24, from test/testbammergecoordinate.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabi/include/c++/8/map:60, from ./libmaus2/util/ArgInfo.hpp:24, from test/testbammergecoordinate.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/ArgInfo.hpp:25, from test/testbammergecoordinate.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/util/ArgInfo.hpp:35, from test/testbammergecoordinate.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:2228:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 return std::__equal_range(__first, __last, __val, ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__iter_comp_val(__comp), ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__val_comp_iter(__comp)); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/ArgInfo.hpp:25, from test/testbammergecoordinate.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from ./libmaus2/bambam/BamCatHeader.hpp:26, from ./libmaus2/bambam/BamMergeCoordinate.hpp:22, from test/testbammergecoordinate.cpp:20: ./libmaus2/bambam/ChromosomeVectorMerge.hpp:278:4: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 } ^ In file included from /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/util/ArgInfo.hpp:35, from test/testbammergecoordinate.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/util/ArgInfo.hpp:35, from test/testbammergecoordinate.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 std::__move_median_to_first(__first, __first + 1, __mid, __last - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/ArgInfo.hpp:25, from test/testbammergecoordinate.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In constructor ‘libmaus2::bambam::ReadGroupVectorMerge::ReadGroupVectorMerge(const std::vector*>&)’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/util/ArgInfo.hpp:35, from test/testbammergecoordinate.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/ArgInfo.hpp:25, from test/testbammergecoordinate.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/util/ArgInfo.hpp:35, from test/testbammergecoordinate.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/util/ArgInfo.hpp:35, from test/testbammergecoordinate.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/ArgInfo.hpp:25, from test/testbammergecoordinate.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In member function ‘void libmaus2::trie::LinearHashTrie<_char_type, _id_type>::fillDepthParent() [with _char_type = char; _id_type = unsigned int]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/util/ArgInfo.hpp:35, from test/testbammergecoordinate.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/ArgInfo.hpp:25, from test/testbammergecoordinate.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘typename libmaus2::trie::LinearHashTrie<_char_type, id_type>::unique_ptr_type libmaus2::trie::Trie<_char_type>::toLinearHashTrie() const [with id_type = unsigned int; _char_type = char]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/ArgInfo.hpp:25, from test/testbammergecoordinate.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/util/ArgInfo.hpp:35, from test/testbammergecoordinate.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/util/ArgInfo.hpp:35, from test/testbammergecoordinate.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 __heap_select(_RandomAccessIterator __first, ^~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 std::__move_median_to_first(__first, __first + 1, __mid, __last - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1933:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 std::__heap_select(__first, __middle, __last, __comp); ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/ArgInfo.hpp:25, from test/testbammergecoordinate.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In member function ‘std::vector > libmaus2::bambam::BamIndex::reg2chunks(uint64_t, uint64_t, uint64_t) const’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/util/ArgInfo.hpp:35, from test/testbammergecoordinate.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ./libmaus2/bambam/BamHeader.hpp:35, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamCatHeader.hpp:22, from ./libmaus2/bambam/BamMergeCoordinate.hpp:22, from test/testbammergecoordinate.cpp:20: ./libmaus2/hashing/ConstantStringHash.hpp: In member function ‘void libmaus2::bambam::BamHeader::initSetup()’: ./libmaus2/hashing/ConstantStringHash.hpp:86:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 shared_ptr_type s(new this_type(ita,ite,maxn)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/ArgInfo.hpp:25, from test/testbammergecoordinate.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In constructor ‘libmaus2::bambam::ProgramHeaderLinesMerge::ProgramHeaderLinesMerge(const std::vector*>&)’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In function ‘int main(int, char**)’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testbammergecoordinate test/testbammergecoordinate-testbammergecoordinate.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -ldl -lrt -L/usr/lib/arm-linux-gnueabi -lz libtool: link: arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testbammergecoordinate test/testbammergecoordinate-testbammergecoordinate.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -ldl -lrt -L/usr/lib/arm-linux-gnueabi -lz -fopenmp -pthread arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testbammergecollate-testbammergecollate.o `test -f 'test/testbammergecollate.cpp' || echo './'`test/testbammergecollate.cpp In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testbammergecollate.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::ReadGroup&}; _Tp = libmaus2::bambam::ReadGroup; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testbammergecollate.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testbammergecollate.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::pair&}; _Tp = std::pair; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector > >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector > >’} changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from ./libmaus2/bambam/BamHeader.hpp:35, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testbammergecollate.cpp:19: ./libmaus2/hashing/ConstantStringHash.hpp: In constructor ‘libmaus2::hashing::ConstantStringHash::ConstantStringHash(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]’: ./libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 ConstantStringHash(iterator ita, iterator ite, uint64_t const maxn = 64*1024) ^~~~~~~~~~~~~~~~~~ ./libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testbammergecollate.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::BamAlignmentDecoderInfo}; _Tp = libmaus2::bambam::BamAlignmentDecoderInfo; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In static member function ‘static std::vector libmaus2::bambam::BamAlignmentDecoderInfo::filenameToInfo(const std::vector >&)’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/map:60, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testbammergecollate.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h: In member function ‘void std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_erase_aux(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator) [with _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:2489:5: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testbammergecollate.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_comp_val >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/map:60, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testbammergecollate.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/map:61, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testbammergecollate.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h: In member function ‘virtual void libmaus2::parallel::SimpleThreadPool::setTaskId(uint64_t, uint64_t)’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testbammergecollate.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::trie::LinearTrieStateBase}; _Tp = libmaus2::trie::LinearTrieStateBase; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testbammergecollate.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/arm-linux-gnueabi/include/c++/8/map:60, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testbammergecollate.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/map:61, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testbammergecollate.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::set; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testbammergecollate.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testbammergecollate.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In static member function ‘static std::vector libmaus2::bambam::BamHeader::getReadGroups(const string&)’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/map:61, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testbammergecollate.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h: In member function ‘virtual void* libmaus2::parallel::SimpleThreadPoolThread::run()’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testbammergecollate.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 __move_median_to_first(_Iterator __result,_Iterator __a, _Iterator __b, ^~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Val_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testbammergecollate.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::Chromosome&}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testbammergecollate.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_comp_val]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testbammergecollate.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In member function ‘void libmaus2::bambam::BamMergeTemplate<_heap_comparator_type, _sort_check_type>::init() [with _heap_comparator_type = libmaus2::bambam::BamMergeCoordinateHeapComparator; _sort_check_type = libmaus2::bambam::BamCatHeader::IsCoordinateSorted]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testbammergecollate.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bitbtree::BitBTree<8, 8>::VectorConstructionTuple}; _Tp = libmaus2::bitbtree::BitBTree<8, 8>::VectorConstructionTuple; _Alloc = std::allocator::VectorConstructionTuple>]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::VectorConstructionTuple, std::allocator::VectorConstructionTuple> >::iterator’ {aka ‘__gnu_cxx::__normal_iterator::VectorConstructionTuple*, std::vector::VectorConstructionTuple, std::allocator::VectorConstructionTuple> > >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {libmaus2::bitbtree::BitBTree<8, 8>::VectorConstructionTuple}; _Tp = libmaus2::bitbtree::BitBTree<8, 8>::VectorConstructionTuple; _Alloc = std::allocator::VectorConstructionTuple>]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::VectorConstructionTuple*, std::vector::VectorConstructionTuple, std::allocator::VectorConstructionTuple> > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testbammergecollate.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 __move_median_to_first(_Iterator __result,_Iterator __a, _Iterator __b, ^~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘std::pair std::__equal_range(_ForwardIterator, _ForwardIterator, const _Tp&, _CompareItTp, _CompareTpIt) [with _ForwardIterator = __gnu_cxx::__normal_iterator >; _Tp = libmaus2::bambam::Chromosome; _CompareItTp = __gnu_cxx::__ops::_Iter_comp_val; _CompareTpIt = __gnu_cxx::__ops::_Val_comp_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:2124:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __equal_range(_ForwardIterator __first, _ForwardIterator __last, ^~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:2124:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In constructor ‘libmaus2::bambam::ChromosomeVectorMerge::ChromosomeVectorMerge(const std::vector*>&, bool)’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:2228:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 return std::__equal_range(__first, __last, __val, ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__iter_comp_val(__comp), ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__val_comp_iter(__comp)); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:2228:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 return std::__equal_range(__first, __last, __val, ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__iter_comp_val(__comp), ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__val_comp_iter(__comp)); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/map:61, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testbammergecollate.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabi/include/c++/8/map:60, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testbammergecollate.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testbammergecollate.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testbammergecollate.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:2228:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 return std::__equal_range(__first, __last, __val, ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__iter_comp_val(__comp), ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__val_comp_iter(__comp)); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testbammergecollate.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testbammergecollate.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 std::__move_median_to_first(__first, __first + 1, __mid, __last - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In constructor ‘libmaus2::bambam::ReadGroupVectorMerge::ReadGroupVectorMerge(const std::vector*>&)’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testbammergecollate.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testbammergecollate.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testbammergecollate.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In member function ‘void libmaus2::trie::LinearHashTrie<_char_type, _id_type>::fillDepthParent() [with _char_type = char; _id_type = unsigned int]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testbammergecollate.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘typename libmaus2::trie::LinearHashTrie<_char_type, id_type>::unique_ptr_type libmaus2::trie::Trie<_char_type>::toLinearHashTrie() const [with id_type = unsigned int; _char_type = char]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testbammergecollate.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testbammergecollate.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testbammergecollate.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 __heap_select(_RandomAccessIterator __first, ^~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 std::__move_median_to_first(__first, __first + 1, __mid, __last - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1933:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 std::__heap_select(__first, __middle, __last, __comp); ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testbammergecollate.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In member function ‘std::vector > libmaus2::bambam::BamIndex::reg2chunks(uint64_t, uint64_t, uint64_t) const’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testbammergecollate.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ./libmaus2/bambam/BamHeader.hpp:35, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testbammergecollate.cpp:19: ./libmaus2/hashing/ConstantStringHash.hpp: In member function ‘void libmaus2::bambam::BamHeader::initSetup()’: ./libmaus2/hashing/ConstantStringHash.hpp:86:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 shared_ptr_type s(new this_type(ita,ite,maxn)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testbammergecollate test/testbammergecollate-testbammergecollate.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -ldl -lrt -L/usr/lib/arm-linux-gnueabi -lz libtool: link: arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testbammergecollate test/testbammergecollate-testbammergecollate.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -ldl -lrt -L/usr/lib/arm-linux-gnueabi -lz -fopenmp -pthread arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testbammergequeryname-testbammergequeryname.o `test -f 'test/testbammergequeryname.cpp' || echo './'`test/testbammergequeryname.cpp In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/ArgInfo.hpp:25, from test/testbammergequeryname.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::ReadGroup&}; _Tp = libmaus2::bambam::ReadGroup; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/ArgInfo.hpp:25, from test/testbammergequeryname.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/ArgInfo.hpp:25, from test/testbammergequeryname.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::pair&}; _Tp = std::pair; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector > >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector > >’} changed in GCC 7.1 In file included from ./libmaus2/bambam/BamHeader.hpp:35, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamCatHeader.hpp:22, from ./libmaus2/bambam/BamMergeQueryName.hpp:22, from test/testbammergequeryname.cpp:20: ./libmaus2/hashing/ConstantStringHash.hpp: In constructor ‘libmaus2::hashing::ConstantStringHash::ConstantStringHash(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]’: ./libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 ConstantStringHash(iterator ita, iterator ite, uint64_t const maxn = 64*1024) ^~~~~~~~~~~~~~~~~~ ./libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/ArgInfo.hpp:25, from test/testbammergequeryname.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::BamAlignmentDecoderInfo}; _Tp = libmaus2::bambam::BamAlignmentDecoderInfo; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In static member function ‘static std::vector libmaus2::bambam::BamAlignmentDecoderInfo::filenameToInfo(const std::vector >&)’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/map:60, from ./libmaus2/util/ArgInfo.hpp:24, from test/testbammergequeryname.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h: In member function ‘void std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_erase_aux(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator) [with _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:2489:5: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:2489:5: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/map:61, from ./libmaus2/util/ArgInfo.hpp:24, from test/testbammergequeryname.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h: In member function ‘virtual void libmaus2::parallel::SimpleThreadPool::setTaskId(uint64_t, uint64_t)’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/ArgInfo.hpp:25, from test/testbammergequeryname.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::trie::LinearTrieStateBase}; _Tp = libmaus2::trie::LinearTrieStateBase; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/util/ArgInfo.hpp:35, from test/testbammergequeryname.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/arm-linux-gnueabi/include/c++/8/map:60, from ./libmaus2/util/ArgInfo.hpp:24, from test/testbammergequeryname.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/map:61, from ./libmaus2/util/ArgInfo.hpp:24, from test/testbammergequeryname.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::set; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/ArgInfo.hpp:25, from test/testbammergequeryname.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In static member function ‘static std::vector libmaus2::bambam::BamHeader::getReadGroups(const string&)’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/map:61, from ./libmaus2/util/ArgInfo.hpp:24, from test/testbammergequeryname.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h: In member function ‘virtual void* libmaus2::parallel::SimpleThreadPoolThread::run()’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/util/ArgInfo.hpp:35, from test/testbammergequeryname.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 __move_median_to_first(_Iterator __result,_Iterator __a, _Iterator __b, ^~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Val_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/ArgInfo.hpp:25, from test/testbammergequeryname.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::Chromosome&}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/util/ArgInfo.hpp:35, from test/testbammergequeryname.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_comp_val]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/util/ArgInfo.hpp:35, from test/testbammergequeryname.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 __move_median_to_first(_Iterator __result,_Iterator __a, _Iterator __b, ^~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘std::pair std::__equal_range(_ForwardIterator, _ForwardIterator, const _Tp&, _CompareItTp, _CompareTpIt) [with _ForwardIterator = __gnu_cxx::__normal_iterator >; _Tp = libmaus2::bambam::Chromosome; _CompareItTp = __gnu_cxx::__ops::_Iter_comp_val; _CompareTpIt = __gnu_cxx::__ops::_Val_comp_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:2124:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __equal_range(_ForwardIterator __first, _ForwardIterator __last, ^~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:2124:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In constructor ‘libmaus2::bambam::ChromosomeVectorMerge::ChromosomeVectorMerge(const std::vector*>&, bool)’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:2228:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 return std::__equal_range(__first, __last, __val, ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__iter_comp_val(__comp), ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__val_comp_iter(__comp)); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:2228:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 return std::__equal_range(__first, __last, __val, ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__iter_comp_val(__comp), ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__val_comp_iter(__comp)); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/map:61, from ./libmaus2/util/ArgInfo.hpp:24, from test/testbammergequeryname.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabi/include/c++/8/map:60, from ./libmaus2/util/ArgInfo.hpp:24, from test/testbammergequeryname.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/ArgInfo.hpp:25, from test/testbammergequeryname.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/util/ArgInfo.hpp:35, from test/testbammergequeryname.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:2228:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 return std::__equal_range(__first, __last, __val, ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__iter_comp_val(__comp), ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__val_comp_iter(__comp)); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/ArgInfo.hpp:25, from test/testbammergequeryname.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from ./libmaus2/bambam/BamCatHeader.hpp:26, from ./libmaus2/bambam/BamMergeQueryName.hpp:22, from test/testbammergequeryname.cpp:20: ./libmaus2/bambam/ChromosomeVectorMerge.hpp:278:4: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 } ^ In file included from /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/util/ArgInfo.hpp:35, from test/testbammergequeryname.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/util/ArgInfo.hpp:35, from test/testbammergequeryname.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 std::__move_median_to_first(__first, __first + 1, __mid, __last - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/ArgInfo.hpp:25, from test/testbammergequeryname.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In constructor ‘libmaus2::bambam::ReadGroupVectorMerge::ReadGroupVectorMerge(const std::vector*>&)’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/util/ArgInfo.hpp:35, from test/testbammergequeryname.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/ArgInfo.hpp:25, from test/testbammergequeryname.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/util/ArgInfo.hpp:35, from test/testbammergequeryname.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/util/ArgInfo.hpp:35, from test/testbammergequeryname.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/ArgInfo.hpp:25, from test/testbammergequeryname.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In member function ‘void libmaus2::trie::LinearHashTrie<_char_type, _id_type>::fillDepthParent() [with _char_type = char; _id_type = unsigned int]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/util/ArgInfo.hpp:35, from test/testbammergequeryname.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/ArgInfo.hpp:25, from test/testbammergequeryname.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘typename libmaus2::trie::LinearHashTrie<_char_type, id_type>::unique_ptr_type libmaus2::trie::Trie<_char_type>::toLinearHashTrie() const [with id_type = unsigned int; _char_type = char]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/ArgInfo.hpp:25, from test/testbammergequeryname.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/util/ArgInfo.hpp:35, from test/testbammergequeryname.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/util/ArgInfo.hpp:35, from test/testbammergequeryname.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 __heap_select(_RandomAccessIterator __first, ^~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 std::__move_median_to_first(__first, __first + 1, __mid, __last - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1933:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 std::__heap_select(__first, __middle, __last, __comp); ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/ArgInfo.hpp:25, from test/testbammergequeryname.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In member function ‘std::vector > libmaus2::bambam::BamIndex::reg2chunks(uint64_t, uint64_t, uint64_t) const’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/util/ArgInfo.hpp:35, from test/testbammergequeryname.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ./libmaus2/bambam/BamHeader.hpp:35, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamCatHeader.hpp:22, from ./libmaus2/bambam/BamMergeQueryName.hpp:22, from test/testbammergequeryname.cpp:20: ./libmaus2/hashing/ConstantStringHash.hpp: In member function ‘void libmaus2::bambam::BamHeader::initSetup()’: ./libmaus2/hashing/ConstantStringHash.hpp:86:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 shared_ptr_type s(new this_type(ita,ite,maxn)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/ArgInfo.hpp:25, from test/testbammergequeryname.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In constructor ‘libmaus2::bambam::BamMergeTemplate<_heap_comparator_type, _sort_check_type>::BamMergeTemplate(const std::vector >&, bool) [with _heap_comparator_type = libmaus2::bambam::BamMergeQueyNameHeapComparator; _sort_check_type = libmaus2::bambam::BamCatHeader::IsQueryNameSorted]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In function ‘int main(int, char**)’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testbammergequeryname test/testbammergequeryname-testbammergequeryname.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -ldl -lrt -L/usr/lib/arm-linux-gnueabi -lz libtool: link: arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testbammergequeryname test/testbammergequeryname-testbammergequeryname.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -ldl -lrt -L/usr/lib/arm-linux-gnueabi -lz -fopenmp -pthread arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testbamcat-testbamcat.o `test -f 'test/testbamcat.cpp' || echo './'`test/testbamcat.cpp In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/ArgInfo.hpp:25, from test/testbamcat.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::ReadGroup&}; _Tp = libmaus2::bambam::ReadGroup; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/ArgInfo.hpp:25, from test/testbamcat.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/ArgInfo.hpp:25, from test/testbamcat.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::pair&}; _Tp = std::pair; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector > >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector > >’} changed in GCC 7.1 In file included from ./libmaus2/bambam/BamHeader.hpp:35, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamCatHeader.hpp:22, from ./libmaus2/bambam/BamCat.hpp:22, from test/testbamcat.cpp:20: ./libmaus2/hashing/ConstantStringHash.hpp: In constructor ‘libmaus2::hashing::ConstantStringHash::ConstantStringHash(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]’: ./libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 ConstantStringHash(iterator ita, iterator ite, uint64_t const maxn = 64*1024) ^~~~~~~~~~~~~~~~~~ ./libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/ArgInfo.hpp:25, from test/testbamcat.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::BamAlignmentDecoderInfo}; _Tp = libmaus2::bambam::BamAlignmentDecoderInfo; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In static member function ‘static std::vector libmaus2::bambam::BamAlignmentDecoderInfo::filenameToInfo(const std::vector >&)’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/map:60, from ./libmaus2/util/ArgInfo.hpp:24, from test/testbamcat.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h: In member function ‘void std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_erase_aux(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator) [with _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:2489:5: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:2489:5: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/map:61, from ./libmaus2/util/ArgInfo.hpp:24, from test/testbamcat.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h: In member function ‘virtual void libmaus2::parallel::SimpleThreadPool::setTaskId(uint64_t, uint64_t)’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/ArgInfo.hpp:25, from test/testbamcat.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::trie::LinearTrieStateBase}; _Tp = libmaus2::trie::LinearTrieStateBase; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/util/ArgInfo.hpp:35, from test/testbamcat.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/arm-linux-gnueabi/include/c++/8/map:60, from ./libmaus2/util/ArgInfo.hpp:24, from test/testbamcat.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/map:61, from ./libmaus2/util/ArgInfo.hpp:24, from test/testbamcat.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::set; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/ArgInfo.hpp:25, from test/testbamcat.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In static member function ‘static std::vector libmaus2::bambam::BamHeader::getReadGroups(const string&)’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/map:61, from ./libmaus2/util/ArgInfo.hpp:24, from test/testbamcat.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h: In member function ‘virtual void* libmaus2::parallel::SimpleThreadPoolThread::run()’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/util/ArgInfo.hpp:35, from test/testbamcat.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 __move_median_to_first(_Iterator __result,_Iterator __a, _Iterator __b, ^~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Val_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/ArgInfo.hpp:25, from test/testbamcat.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::Chromosome&}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/util/ArgInfo.hpp:35, from test/testbamcat.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 __move_median_to_first(_Iterator __result,_Iterator __a, _Iterator __b, ^~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘std::pair std::__equal_range(_ForwardIterator, _ForwardIterator, const _Tp&, _CompareItTp, _CompareTpIt) [with _ForwardIterator = __gnu_cxx::__normal_iterator >; _Tp = libmaus2::bambam::Chromosome; _CompareItTp = __gnu_cxx::__ops::_Iter_comp_val; _CompareTpIt = __gnu_cxx::__ops::_Val_comp_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:2124:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __equal_range(_ForwardIterator __first, _ForwardIterator __last, ^~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:2124:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In constructor ‘libmaus2::bambam::ChromosomeVectorMerge::ChromosomeVectorMerge(const std::vector*>&, bool)’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:2228:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 return std::__equal_range(__first, __last, __val, ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__iter_comp_val(__comp), ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__val_comp_iter(__comp)); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:2228:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 return std::__equal_range(__first, __last, __val, ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__iter_comp_val(__comp), ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__val_comp_iter(__comp)); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/map:61, from ./libmaus2/util/ArgInfo.hpp:24, from test/testbamcat.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabi/include/c++/8/map:60, from ./libmaus2/util/ArgInfo.hpp:24, from test/testbamcat.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/ArgInfo.hpp:25, from test/testbamcat.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/util/ArgInfo.hpp:35, from test/testbamcat.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:2228:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 return std::__equal_range(__first, __last, __val, ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__iter_comp_val(__comp), ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__val_comp_iter(__comp)); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/ArgInfo.hpp:25, from test/testbamcat.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from ./libmaus2/bambam/BamCatHeader.hpp:26, from ./libmaus2/bambam/BamCat.hpp:22, from test/testbamcat.cpp:20: ./libmaus2/bambam/ChromosomeVectorMerge.hpp:278:4: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 } ^ In file included from /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/util/ArgInfo.hpp:35, from test/testbamcat.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/util/ArgInfo.hpp:35, from test/testbamcat.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 std::__move_median_to_first(__first, __first + 1, __mid, __last - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/ArgInfo.hpp:25, from test/testbamcat.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In constructor ‘libmaus2::bambam::ReadGroupVectorMerge::ReadGroupVectorMerge(const std::vector*>&)’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/util/ArgInfo.hpp:35, from test/testbamcat.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/ArgInfo.hpp:25, from test/testbamcat.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/util/ArgInfo.hpp:35, from test/testbamcat.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/util/ArgInfo.hpp:35, from test/testbamcat.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/ArgInfo.hpp:25, from test/testbamcat.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In member function ‘void libmaus2::trie::LinearHashTrie<_char_type, _id_type>::fillDepthParent() [with _char_type = char; _id_type = unsigned int]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/util/ArgInfo.hpp:35, from test/testbamcat.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/ArgInfo.hpp:25, from test/testbamcat.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘typename libmaus2::trie::LinearHashTrie<_char_type, id_type>::unique_ptr_type libmaus2::trie::Trie<_char_type>::toLinearHashTrie() const [with id_type = unsigned int; _char_type = char]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/ArgInfo.hpp:25, from test/testbamcat.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/util/ArgInfo.hpp:35, from test/testbamcat.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/util/ArgInfo.hpp:35, from test/testbamcat.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 __heap_select(_RandomAccessIterator __first, ^~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 std::__move_median_to_first(__first, __first + 1, __mid, __last - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1933:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 std::__heap_select(__first, __middle, __last, __comp); ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/ArgInfo.hpp:25, from test/testbamcat.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In member function ‘std::vector > libmaus2::bambam::BamIndex::reg2chunks(uint64_t, uint64_t, uint64_t) const’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/util/ArgInfo.hpp:35, from test/testbamcat.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ./libmaus2/bambam/BamHeader.hpp:35, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamCatHeader.hpp:22, from ./libmaus2/bambam/BamCat.hpp:22, from test/testbamcat.cpp:20: ./libmaus2/hashing/ConstantStringHash.hpp: In member function ‘void libmaus2::bambam::BamHeader::initSetup()’: ./libmaus2/hashing/ConstantStringHash.hpp:86:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 shared_ptr_type s(new this_type(ita,ite,maxn)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/ArgInfo.hpp:25, from test/testbamcat.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In constructor ‘libmaus2::bambam::ProgramHeaderLinesMerge::ProgramHeaderLinesMerge(const std::vector*>&)’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testbamcat test/testbamcat-testbamcat.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -ldl -lrt -L/usr/lib/arm-linux-gnueabi -lz libtool: link: arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testbamcat test/testbamcat-testbamcat.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -ldl -lrt -L/usr/lib/arm-linux-gnueabi -lz -fopenmp -pthread arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testautoarray2d-testautoarray2d.o `test -f 'test/testautoarray2d.cpp' || echo './'`test/testautoarray2d.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testautoarray2d test/testautoarray2d-testautoarray2d.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/arm-linux-gnueabi -lz libtool: link: arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testautoarray2d test/testautoarray2d-testautoarray2d.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/arm-linux-gnueabi -lz -fopenmp -pthread arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testhist-testhist.o `test -f 'test/testhist.cpp' || echo './'`test/testhist.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testhist test/testhist-testhist.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/arm-linux-gnueabi -lz libtool: link: arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testhist test/testhist-testhist.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/arm-linux-gnueabi -lz -fopenmp -pthread arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testfastaparse-testfastaparse.o `test -f 'test/testfastaparse.cpp' || echo './'`test/testfastaparse.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testfastaparse test/testfastaparse-testfastaparse.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/arm-linux-gnueabi -lz libtool: link: arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testfastaparse test/testfastaparse-testfastaparse.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/arm-linux-gnueabi -lz -fopenmp -pthread arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testvalidatebamindex-testvalidatebamindex.o `test -f 'test/testvalidatebamindex.cpp' || echo './'`test/testvalidatebamindex.cpp In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/parallel/PosixSpinLock.hpp:23, from ./libmaus2/aio/StreamLock.hpp:21, from ./libmaus2/autoarray/GenericAlignedAllocation.hpp:23, from ./libmaus2/autoarray/AutoArray.hpp:26, from ./libmaus2/bambam/BamIndexBin.hpp:22, from ./libmaus2/bambam/BamIndexRef.hpp:22, from ./libmaus2/bambam/BamIndex.hpp:22, from test/testvalidatebamindex.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::ReadGroup&}; _Tp = libmaus2::bambam::ReadGroup; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 In file included from ./libmaus2/bambam/BamHeader.hpp:35, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamIndexGenerator.hpp:31, from test/testvalidatebamindex.cpp:21: ./libmaus2/hashing/ConstantStringHash.hpp: In constructor ‘libmaus2::hashing::ConstantStringHash::ConstantStringHash(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]’: ./libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 ConstantStringHash(iterator ita, iterator ite, uint64_t const maxn = 64*1024) ^~~~~~~~~~~~~~~~~~ ./libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/arm-linux-gnueabi/include/c++/8/map:60, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/bambam/BamIndexBin.hpp:22, from ./libmaus2/bambam/BamIndexRef.hpp:22, from ./libmaus2/bambam/BamIndex.hpp:22, from test/testvalidatebamindex.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/parallel/PosixSpinLock.hpp:23, from ./libmaus2/aio/StreamLock.hpp:21, from ./libmaus2/autoarray/GenericAlignedAllocation.hpp:23, from ./libmaus2/autoarray/AutoArray.hpp:26, from ./libmaus2/bambam/BamIndexBin.hpp:22, from ./libmaus2/bambam/BamIndexRef.hpp:22, from ./libmaus2/bambam/BamIndex.hpp:22, from test/testvalidatebamindex.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::trie::LinearTrieStateBase}; _Tp = libmaus2::trie::LinearTrieStateBase; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/bambam/BamIndexBin.hpp:22, from ./libmaus2/bambam/BamIndexRef.hpp:22, from ./libmaus2/bambam/BamIndex.hpp:22, from test/testvalidatebamindex.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/parallel/PosixSpinLock.hpp:23, from ./libmaus2/aio/StreamLock.hpp:21, from ./libmaus2/autoarray/GenericAlignedAllocation.hpp:23, from ./libmaus2/autoarray/AutoArray.hpp:26, from ./libmaus2/bambam/BamIndexBin.hpp:22, from ./libmaus2/bambam/BamIndexRef.hpp:22, from ./libmaus2/bambam/BamIndex.hpp:22, from test/testvalidatebamindex.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In static member function ‘static std::vector libmaus2::bambam::BamHeader::getReadGroups(const string&)’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/bambam/BamIndexBin.hpp:22, from ./libmaus2/bambam/BamIndexRef.hpp:22, from ./libmaus2/bambam/BamIndex.hpp:22, from test/testvalidatebamindex.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/bambam/BamIndexBin.hpp:22, from ./libmaus2/bambam/BamIndexRef.hpp:22, from ./libmaus2/bambam/BamIndex.hpp:22, from test/testvalidatebamindex.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/parallel/PosixSpinLock.hpp:23, from ./libmaus2/aio/StreamLock.hpp:21, from ./libmaus2/autoarray/GenericAlignedAllocation.hpp:23, from ./libmaus2/autoarray/AutoArray.hpp:26, from ./libmaus2/bambam/BamIndexBin.hpp:22, from ./libmaus2/bambam/BamIndexRef.hpp:22, from ./libmaus2/bambam/BamIndex.hpp:22, from test/testvalidatebamindex.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘typename libmaus2::trie::LinearHashTrie<_char_type, id_type>::unique_ptr_type libmaus2::trie::Trie<_char_type>::toLinearHashTrie() const [with id_type = unsigned int; _char_type = char]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/parallel/PosixSpinLock.hpp:23, from ./libmaus2/aio/StreamLock.hpp:21, from ./libmaus2/autoarray/GenericAlignedAllocation.hpp:23, from ./libmaus2/autoarray/AutoArray.hpp:26, from ./libmaus2/bambam/BamIndexBin.hpp:22, from ./libmaus2/bambam/BamIndexRef.hpp:22, from ./libmaus2/bambam/BamIndex.hpp:22, from test/testvalidatebamindex.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/bambam/BamIndexBin.hpp:22, from ./libmaus2/bambam/BamIndexRef.hpp:22, from ./libmaus2/bambam/BamIndex.hpp:22, from test/testvalidatebamindex.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ./libmaus2/bambam/BamHeader.hpp:35, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamIndexGenerator.hpp:31, from test/testvalidatebamindex.cpp:21: ./libmaus2/hashing/ConstantStringHash.hpp: In member function ‘void libmaus2::bambam::BamHeader::initSetup()’: ./libmaus2/hashing/ConstantStringHash.hpp:86:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 shared_ptr_type s(new this_type(ita,ite,maxn)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/parallel/PosixSpinLock.hpp:23, from ./libmaus2/aio/StreamLock.hpp:21, from ./libmaus2/autoarray/GenericAlignedAllocation.hpp:23, from ./libmaus2/autoarray/AutoArray.hpp:26, from ./libmaus2/bambam/BamIndexBin.hpp:22, from ./libmaus2/bambam/BamIndexRef.hpp:22, from ./libmaus2/bambam/BamIndex.hpp:22, from test/testvalidatebamindex.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void libmaus2::bambam::BamHeader::init(stream_type&) [with stream_type = libmaus2::lz::BgzfInflateStream]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/map:61, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/bambam/BamIndexBin.hpp:22, from ./libmaus2/bambam/BamIndexRef.hpp:22, from ./libmaus2/bambam/BamIndex.hpp:22, from test/testvalidatebamindex.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h: In function ‘uint64_t writeMappedFile(const string&, const string&, libmaus2::util::Histogram&)’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h: In function ‘void getBinHistogram(const string&, libmaus2::util::Histogram&)’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h: In function ‘int main(int, char**)’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testvalidatebamindex test/testvalidatebamindex-testvalidatebamindex.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/arm-linux-gnueabi -lz libtool: link: arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testvalidatebamindex test/testvalidatebamindex-testvalidatebamindex.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/arm-linux-gnueabi -lz -fopenmp -pthread arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testeditdistance-testeditdistance.o `test -f 'test/testeditdistance.cpp' || echo './'`test/testeditdistance.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testeditdistance test/testeditdistance-testeditdistance.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/arm-linux-gnueabi -lz libtool: link: arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testeditdistance test/testeditdistance-testeditdistance.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/arm-linux-gnueabi -lz -fopenmp -pthread arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testthreadpool-testthreadpool.o `test -f 'test/testthreadpool.cpp' || echo './'`test/testthreadpool.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testthreadpool test/testthreadpool-testthreadpool.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/arm-linux-gnueabi -lz libtool: link: arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testthreadpool test/testthreadpool-testthreadpool.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/arm-linux-gnueabi -lz -fopenmp -pthread arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testsimplethreadpool-testsimplethreadpool.o `test -f 'test/testsimplethreadpool.cpp' || echo './'`test/testsimplethreadpool.cpp In file included from /usr/arm-linux-gnueabi/include/c++/8/map:60, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/parallel/PosixThread.hpp:22, from ./libmaus2/parallel/SimpleThreadPoolThread.hpp:22, from ./libmaus2/parallel/SimpleThreadPool.hpp:25, from test/testsimplethreadpool.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/map:61, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/parallel/PosixThread.hpp:22, from ./libmaus2/parallel/SimpleThreadPoolThread.hpp:22, from ./libmaus2/parallel/SimpleThreadPool.hpp:25, from test/testsimplethreadpool.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h: In member function ‘virtual void libmaus2::parallel::SimpleThreadPool::setTaskId(uint64_t, uint64_t)’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h: In member function ‘virtual void* libmaus2::parallel::SimpleThreadPoolThread::run()’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testsimplethreadpool test/testsimplethreadpool-testsimplethreadpool.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/arm-linux-gnueabi -lz libtool: link: arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testsimplethreadpool test/testsimplethreadpool-testsimplethreadpool.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/arm-linux-gnueabi -lz -fopenmp -pthread arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testthreadpoolbamdecode-testthreadpoolbamdecode.o `test -f 'test/testthreadpoolbamdecode.cpp' || echo './'`test/testthreadpoolbamdecode.cpp test/testthreadpoolbamdecode.cpp: In member function ‘virtual void BamThreadPoolDecodeBamParsePackageDispatcher::dispatch(libmaus2::parallel::ThreadWorkPackage*, libmaus2::parallel::ThreadPoolInterfaceEnqueTermInterface&)’: test/testthreadpoolbamdecode.cpp:694:40: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] while ( (pc-pa >= 4) && ((pc-pa) >= (4+(lblocksize=decodeLittleEndianInteger<4>(pa)) )) ) ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/parallel/PosixConditionSemaphore.hpp:24, from ./libmaus2/parallel/ThreadPool.hpp:22, from test/testthreadpoolbamdecode.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::ReadGroup&}; _Tp = libmaus2::bambam::ReadGroup; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const BamThreadPoolDecodeBamParseQueueInfo&}; _Tp = BamThreadPoolDecodeBamParseQueueInfo; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector >::iterator’ {aka ‘__gnu_cxx::__normal_iterator > >’} changed in GCC 7.1 In file included from /usr/arm-linux-gnueabi/include/c++/8/queue:62, from ./libmaus2/parallel/SynchronousHeap.hpp:31, from ./libmaus2/parallel/TerminatableSynchronousHeap.hpp:23, from ./libmaus2/parallel/ThreadPool.hpp:23, from test/testthreadpoolbamdecode.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = BamThreadPoolDecodeBamParseQueueInfo; _Compare = __gnu_cxx::__ops::_Iter_comp_val >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/parallel/PosixConditionSemaphore.hpp:24, from ./libmaus2/parallel/ThreadPool.hpp:22, from test/testthreadpoolbamdecode.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In member function ‘virtual void BamThreadPoolDecodeDecompressPackageDispatcher::dispatch(libmaus2::parallel::ThreadWorkPackage*, libmaus2::parallel::ThreadPoolInterfaceEnqueTermInterface&)’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/parallel/PosixConditionSemaphore.hpp:24, from ./libmaus2/parallel/ThreadPool.hpp:22, from test/testthreadpoolbamdecode.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from ./libmaus2/bambam/BamHeader.hpp:35, from test/testthreadpoolbamdecode.cpp:22: ./libmaus2/hashing/ConstantStringHash.hpp: In constructor ‘libmaus2::hashing::ConstantStringHash::ConstantStringHash(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]’: ./libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 ConstantStringHash(iterator ita, iterator ite, uint64_t const maxn = 64*1024) ^~~~~~~~~~~~~~~~~~ ./libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/parallel/PosixConditionSemaphore.hpp:24, from ./libmaus2/parallel/ThreadPool.hpp:22, from test/testthreadpoolbamdecode.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::trie::LinearTrieStateBase}; _Tp = libmaus2::trie::LinearTrieStateBase; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/parallel/PosixConditionSemaphore.hpp:24, from ./libmaus2/parallel/ThreadPool.hpp:22, from test/testthreadpoolbamdecode.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In static member function ‘static std::vector libmaus2::bambam::BamHeader::getReadGroups(const string&)’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/parallel/PosixThread.hpp:22, from ./libmaus2/parallel/ThreadPoolThread.hpp:22, from ./libmaus2/parallel/ThreadPool.hpp:24, from test/testthreadpoolbamdecode.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/arm-linux-gnueabi/include/c++/8/queue:62, from ./libmaus2/parallel/SynchronousHeap.hpp:31, from ./libmaus2/parallel/TerminatableSynchronousHeap.hpp:23, from ./libmaus2/parallel/ThreadPool.hpp:23, from test/testthreadpoolbamdecode.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/parallel/PosixThread.hpp:22, from ./libmaus2/parallel/ThreadPoolThread.hpp:22, from ./libmaus2/parallel/ThreadPool.hpp:24, from test/testthreadpoolbamdecode.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/parallel/PosixConditionSemaphore.hpp:24, from ./libmaus2/parallel/ThreadPool.hpp:22, from test/testthreadpoolbamdecode.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In member function ‘void libmaus2::trie::LinearHashTrie<_char_type, _id_type>::fillDepthParent() [with _char_type = char; _id_type = unsigned int]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/parallel/PosixThread.hpp:22, from ./libmaus2/parallel/ThreadPoolThread.hpp:22, from ./libmaus2/parallel/ThreadPool.hpp:24, from test/testthreadpoolbamdecode.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/parallel/PosixConditionSemaphore.hpp:24, from ./libmaus2/parallel/ThreadPool.hpp:22, from test/testthreadpoolbamdecode.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘typename libmaus2::trie::LinearHashTrie<_char_type, id_type>::unique_ptr_type libmaus2::trie::Trie<_char_type>::toLinearHashTrie() const [with id_type = unsigned int; _char_type = char]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/parallel/PosixConditionSemaphore.hpp:24, from ./libmaus2/parallel/ThreadPool.hpp:22, from test/testthreadpoolbamdecode.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from ./libmaus2/bambam/BamHeader.hpp:35, from test/testthreadpoolbamdecode.cpp:22: ./libmaus2/hashing/ConstantStringHash.hpp: In member function ‘void libmaus2::bambam::BamHeader::initSetup()’: ./libmaus2/hashing/ConstantStringHash.hpp:86:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 shared_ptr_type s(new this_type(ita,ite,maxn)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/parallel/PosixConditionSemaphore.hpp:24, from ./libmaus2/parallel/ThreadPool.hpp:22, from test/testthreadpoolbamdecode.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In member function ‘virtual void BamThreadPoolDecodeBamParsePackageDispatcher::dispatch(libmaus2::parallel::ThreadWorkPackage*, libmaus2::parallel::ThreadPoolInterfaceEnqueTermInterface&)’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testthreadpoolbamdecode test/testthreadpoolbamdecode-testthreadpoolbamdecode.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/arm-linux-gnueabi -lz libtool: link: arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testthreadpoolbamdecode test/testthreadpoolbamdecode-testthreadpoolbamdecode.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/arm-linux-gnueabi -lz -fopenmp -pthread arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testsimplethreadpoolbamdecode-testsimplethreadpoolbamdecode.o `test -f 'test/testsimplethreadpoolbamdecode.cpp' || echo './'`test/testsimplethreadpoolbamdecode.cpp test/testsimplethreadpoolbamdecode.cpp: In instantiation of ‘void BamThreadPoolDecodeBamParsePackageDispatcher<_order_type>::dispatch(libmaus2::parallel::SimpleThreadWorkPackage*, libmaus2::parallel::SimpleThreadPoolInterfaceEnqueTermInterface&) [with _order_type = libmaus2::bambam::BamAlignmentNameComparator]’: test/testsimplethreadpoolbamdecode.cpp:921:15: required from here test/testsimplethreadpoolbamdecode.cpp:979:40: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] while ( (pc-pa >= 4) && ((pc-pa) >= (4+(lblocksize=decodeLittleEndianInteger<4>(pa)) )) ) ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ test/testsimplethreadpoolbamdecode.cpp: In instantiation of ‘void BamThreadPoolDecodeBamParsePackageDispatcher<_order_type>::dispatch(libmaus2::parallel::SimpleThreadWorkPackage*, libmaus2::parallel::SimpleThreadPoolInterfaceEnqueTermInterface&) [with _order_type = libmaus2::bambam::BamAlignmentPosComparator]’: test/testsimplethreadpoolbamdecode.cpp:921:15: required from here test/testsimplethreadpoolbamdecode.cpp:979:40: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] test/testsimplethreadpoolbamdecode.cpp: In instantiation of ‘void BamThreadPoolMergeProcessPackageDispatcher<_order_type>::dispatch(libmaus2::parallel::SimpleThreadWorkPackage*, libmaus2::parallel::SimpleThreadPoolInterfaceEnqueTermInterface&) [with _order_type = libmaus2::bambam::BamAlignmentNameComparator]’: test/testsimplethreadpoolbamdecode.cpp:2712:15: required from here test/testsimplethreadpoolbamdecode.cpp:2771:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] (pe-pc) >= (4+(parserState.blocklen=decodeLEInteger4(pc))) ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ test/testsimplethreadpoolbamdecode.cpp:2779:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] (pe-pc) >= (4+(parserState.blocklen=decodeLEInteger4(pc))) ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ test/testsimplethreadpoolbamdecode.cpp: In instantiation of ‘void BamThreadPoolMergeProcessPackageDispatcher<_order_type>::dispatch(libmaus2::parallel::SimpleThreadWorkPackage*, libmaus2::parallel::SimpleThreadPoolInterfaceEnqueTermInterface&) [with _order_type = libmaus2::bambam::BamAlignmentPosComparator]’: test/testsimplethreadpoolbamdecode.cpp:2712:15: required from here test/testsimplethreadpoolbamdecode.cpp:2771:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] (pe-pc) >= (4+(parserState.blocklen=decodeLEInteger4(pc))) ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ test/testsimplethreadpoolbamdecode.cpp:2779:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] (pe-pc) >= (4+(parserState.blocklen=decodeLEInteger4(pc))) ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from test/testsimplethreadpoolbamdecode.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::ReadGroup&}; _Tp = libmaus2::bambam::ReadGroup; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector > >’} changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from ./libmaus2/bambam/BamHeader.hpp:35, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from ./libmaus2/bambam/BamAlignment.hpp:24, from test/testsimplethreadpoolbamdecode.cpp:19: ./libmaus2/hashing/ConstantStringHash.hpp: In constructor ‘libmaus2::hashing::ConstantStringHash::ConstantStringHash(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]’: ./libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 ConstantStringHash(iterator ita, iterator ite, uint64_t const maxn = 64*1024) ^~~~~~~~~~~~~~~~~~ ./libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/arm-linux-gnueabi/include/c++/8/map:60, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from test/testsimplethreadpoolbamdecode.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/map:61, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from test/testsimplethreadpoolbamdecode.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h: In member function ‘virtual void libmaus2::parallel::SimpleThreadPool::setTaskId(uint64_t, uint64_t)’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from test/testsimplethreadpoolbamdecode.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::trie::LinearTrieStateBase}; _Tp = libmaus2::trie::LinearTrieStateBase; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from test/testsimplethreadpoolbamdecode.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from test/testsimplethreadpoolbamdecode.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In static member function ‘static std::vector libmaus2::bambam::BamHeader::getReadGroups(const string&)’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/map:61, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from test/testsimplethreadpoolbamdecode.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h: In member function ‘virtual void* libmaus2::parallel::SimpleThreadPoolThread::run()’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from test/testsimplethreadpoolbamdecode.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from test/testsimplethreadpoolbamdecode.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from test/testsimplethreadpoolbamdecode.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘typename libmaus2::trie::LinearHashTrie<_char_type, id_type>::unique_ptr_type libmaus2::trie::Trie<_char_type>::toLinearHashTrie() const [with id_type = unsigned int; _char_type = char]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from test/testsimplethreadpoolbamdecode.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from test/testsimplethreadpoolbamdecode.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ./libmaus2/bambam/BamHeader.hpp:35, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from ./libmaus2/bambam/BamAlignment.hpp:24, from test/testsimplethreadpoolbamdecode.cpp:19: ./libmaus2/hashing/ConstantStringHash.hpp: In member function ‘void libmaus2::bambam::BamHeader::initSetup()’: ./libmaus2/hashing/ConstantStringHash.hpp:86:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 shared_ptr_type s(new this_type(ita,ite,maxn)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from test/testsimplethreadpoolbamdecode.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const BamThreadPoolDecodeBamParseQueueInfo&}; _Tp = BamThreadPoolDecodeBamParseQueueInfo; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector >::iterator’ {aka ‘__gnu_cxx::__normal_iterator > >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from test/testsimplethreadpoolbamdecode.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = BamThreadPoolDecodeBamParseQueueInfo; _Compare = __gnu_cxx::__ops::_Iter_comp_val >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from test/testsimplethreadpoolbamdecode.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In member function ‘void std::priority_queue<_Tp, _Sequence, _Compare>::push(const value_type&) [with _Tp = BamThreadPoolDecodeBamParseQueueInfo; _Sequence = std::vector >; _Compare = std::less]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from test/testsimplethreadpoolbamdecode.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = BamThreadPoolMergeWritePendingInfo; _Compare = __gnu_cxx::__ops::_Iter_comp_val]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_val >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from test/testsimplethreadpoolbamdecode.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const BamThreadPoolMergeProcessBufferInfo&}; _Tp = BamThreadPoolMergeProcessBufferInfo; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from test/testsimplethreadpoolbamdecode.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = BamThreadPoolMergeProcessBufferInfo; _Compare = __gnu_cxx::__ops::_Iter_comp_val]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_val >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from test/testsimplethreadpoolbamdecode.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In member function ‘void BamThreadPoolDecodeDecompressPackageDispatcher<_order_type>::dispatch(libmaus2::parallel::SimpleThreadWorkPackage*, libmaus2::parallel::SimpleThreadPoolInterfaceEnqueTermInterface&) [with _order_type = libmaus2::bambam::BamAlignmentNameComparator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In member function ‘void BamThreadPoolDecodeDecompressPackageDispatcher<_order_type>::dispatch(libmaus2::parallel::SimpleThreadWorkPackage*, libmaus2::parallel::SimpleThreadPoolInterfaceEnqueTermInterface&) [with _order_type = libmaus2::bambam::BamAlignmentPosComparator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from test/testsimplethreadpoolbamdecode.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = BamThreadPoolMergeWritePendingInfo; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from test/testsimplethreadpoolbamdecode.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector > >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from test/testsimplethreadpoolbamdecode.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In member function ‘void BamThreadPoolMergeProcessPackageDispatcher<_order_type>::dispatch(libmaus2::parallel::SimpleThreadWorkPackage*, libmaus2::parallel::SimpleThreadPoolInterfaceEnqueTermInterface&) [with _order_type = libmaus2::bambam::BamAlignmentNameComparator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In member function ‘void BamThreadPoolMergeProcessPackageDispatcher<_order_type>::dispatch(libmaus2::parallel::SimpleThreadWorkPackage*, libmaus2::parallel::SimpleThreadPoolInterfaceEnqueTermInterface&) [with _order_type = libmaus2::bambam::BamAlignmentPosComparator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from test/testsimplethreadpoolbamdecode.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::sorting::ParallelStableSort::MergeLevel}; _Tp = libmaus2::sorting::ParallelStableSort::MergeLevel; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void BamThreadPoolDecodeBamProcessPackageDispatcher<_order_type>::dispatch(libmaus2::parallel::SimpleThreadWorkPackage*, libmaus2::parallel::SimpleThreadPoolInterfaceEnqueTermInterface&) [with _order_type = libmaus2::bambam::BamAlignmentNameComparator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::sorting::ParallelStableSort::MergeLevel}; _Tp = libmaus2::sorting::ParallelStableSort::MergeLevel; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void BamThreadPoolDecodeBamProcessPackageDispatcher<_order_type>::dispatch(libmaus2::parallel::SimpleThreadWorkPackage*, libmaus2::parallel::SimpleThreadPoolInterfaceEnqueTermInterface&) [with _order_type = libmaus2::bambam::BamAlignmentPosComparator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testsimplethreadpoolbamdecode test/testsimplethreadpoolbamdecode-testsimplethreadpoolbamdecode.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/arm-linux-gnueabi -lz libtool: link: arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testsimplethreadpoolbamdecode test/testsimplethreadpoolbamdecode-testsimplethreadpoolbamdecode.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/arm-linux-gnueabi -lz -fopenmp -pthread arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testgaparraybyte-testgaparraybyte.o `test -f 'test/testgaparraybyte.cpp' || echo './'`test/testgaparraybyte.cpp In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from test/testgaparraybyte.cpp:21: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector > >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 In file included from /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/util/GetFileSize.hpp:26, from ./libmaus2/aio/SynchronousGenericInput.hpp:23, from ./libmaus2/suffixsort/GapArrayByteDecoder.hpp:24, from ./libmaus2/suffixsort/GapArrayByteDecoderBuffer.hpp:22, from ./libmaus2/suffixsort/GapArrayByte.hpp:22, from test/testgaparraybyte.cpp:24: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_val::HeapOrderAdapter>]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::HeapOrderAdapter>]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from test/testgaparraybyte.cpp:21: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In constructor ‘libmaus2::sorting::MergingReadBack<_data_type, _order_type>::MergingReadBack(const string&, const std::vector&, uint64_t, uint64_t) [with _data_type = long long unsigned int; _order_type = std::less]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘bool libmaus2::sorting::MergingReadBack<_data_type, _order_type>::getNext(libmaus2::sorting::MergingReadBack<_data_type, _order_type>::data_type&) [with _data_type = long long unsigned int; _order_type = std::less]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void libmaus2::suffixsort::GapArrayByte::flush()’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In function ‘_Z16testGapArrayBytev._omp_fn.0’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testgaparraybyte test/testgaparraybyte-testgaparraybyte.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/arm-linux-gnueabi -lz libtool: link: arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testgaparraybyte test/testgaparraybyte-testgaparraybyte.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/arm-linux-gnueabi -lz -fopenmp -pthread arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testzlibconcat-testzlibconcat.o `test -f 'test/testzlibconcat.cpp' || echo './'`test/testzlibconcat.cpp In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/parallel/PosixSpinLock.hpp:23, from ./libmaus2/aio/StreamLock.hpp:21, from ./libmaus2/autoarray/GenericAlignedAllocation.hpp:23, from ./libmaus2/autoarray/AutoArray.hpp:26, from ./libmaus2/lz/CompressorObject.hpp:23, from ./libmaus2/lz/ZlibCompressorObject.hpp:22, from ./libmaus2/lz/ZlibCompressorObjectFactory.hpp:22, from test/testzlibconcat.cpp:22: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::lz::SimpleCompressedConcatInputStreamFragment > >&}; _Tp = libmaus2::lz::SimpleCompressedConcatInputStreamFragment >; _Alloc = std::allocator > >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector >, std::allocator > > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/parallel/PosixSpinLock.hpp:23, from ./libmaus2/aio/StreamLock.hpp:21, from ./libmaus2/autoarray/GenericAlignedAllocation.hpp:23, from ./libmaus2/autoarray/AutoArray.hpp:26, from ./libmaus2/lz/CompressorObject.hpp:23, from ./libmaus2/lz/ZlibCompressorObject.hpp:22, from ./libmaus2/lz/ZlibCompressorObjectFactory.hpp:22, from test/testzlibconcat.cpp:22: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In function ‘void testConcat(const string&, const string&)’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testzlibconcat test/testzlibconcat-testzlibconcat.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/arm-linux-gnueabi -lz libtool: link: arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testzlibconcat test/testzlibconcat-testzlibconcat.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/arm-linux-gnueabi -lz -fopenmp -pthread arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testsimplecompressblock-testsimplecompressblock.o `test -f 'test/testsimplecompressblock.cpp' || echo './'`test/testsimplecompressblock.cpp In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/parallel/PosixSpinLock.hpp:23, from ./libmaus2/aio/StreamLock.hpp:21, from ./libmaus2/autoarray/GenericAlignedAllocation.hpp:23, from ./libmaus2/autoarray/AutoArray.hpp:26, from ./libmaus2/lz/SimpleCompressedInputBlockConcat.hpp:22, from test/testsimplecompressblock.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::lz::SimpleCompressedStreamNamedInterval}; _Tp = libmaus2::lz::SimpleCompressedStreamNamedInterval; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {libmaus2::lz::SimpleCompressedStreamNamedInterval}; _Tp = libmaus2::lz::SimpleCompressedStreamNamedInterval; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testsimplecompressblock test/testsimplecompressblock-testsimplecompressblock.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -ldl -lrt -L/usr/lib/arm-linux-gnueabi -lz libtool: link: arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testsimplecompressblock test/testsimplecompressblock-testsimplecompressblock.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -ldl -lrt -L/usr/lib/arm-linux-gnueabi -lz -fopenmp -pthread arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testrazdec-testrazdec.o `test -f 'test/testrazdec.cpp' || echo './'`test/testrazdec.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testrazdec test/testrazdec-testrazdec.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/arm-linux-gnueabi -lz libtool: link: arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testrazdec test/testrazdec-testrazdec.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/arm-linux-gnueabi -lz -fopenmp -pthread arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testfaindex-testfaindex.o `test -f 'test/testfaindex.cpp' || echo './'`test/testfaindex.cpp In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/parallel/PosixSpinLock.hpp:23, from ./libmaus2/aio/StreamLock.hpp:21, from ./libmaus2/autoarray/GenericAlignedAllocation.hpp:23, from ./libmaus2/autoarray/AutoArray.hpp:26, from ./libmaus2/fastx/FastAIndex.hpp:22, from test/testfaindex.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::fastx::FastAIndexEntry}; _Tp = libmaus2::fastx::FastAIndexEntry; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In constructor ‘libmaus2::fastx::FastAIndex::FastAIndex(std::istream&)’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testfaindex test/testfaindex-testfaindex.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/arm-linux-gnueabi -lz libtool: link: arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testfaindex test/testfaindex-testfaindex.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/arm-linux-gnueabi -lz -fopenmp -pthread arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testfastablockrecode-testfastablockrecode.o `test -f 'test/testfastablockrecode.cpp' || echo './'`test/testfastablockrecode.cpp In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/parallel/PosixSpinLock.hpp:23, from ./libmaus2/aio/StreamLock.hpp:21, from ./libmaus2/autoarray/GenericAlignedAllocation.hpp:23, from ./libmaus2/autoarray/AutoArray.hpp:26, from ./libmaus2/bambam/BamSeqEncodeTable.hpp:22, from ./libmaus2/fastx/FastABPGenerator.hpp:22, from test/testfastablockrecode.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/parallel/PosixSpinLock.hpp:23, from ./libmaus2/aio/StreamLock.hpp:21, from ./libmaus2/autoarray/GenericAlignedAllocation.hpp:23, from ./libmaus2/autoarray/AutoArray.hpp:26, from ./libmaus2/bambam/BamSeqEncodeTable.hpp:22, from ./libmaus2/fastx/FastABPGenerator.hpp:22, from test/testfastablockrecode.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In static member function ‘static uint64_t libmaus2::fastx::FastABPGenerator::fastAToFastaBP(std::istream&, std::ostream&, std::ostream*, uint64_t)’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from test/testfastablockrecode.cpp:20: ./libmaus2/fastx/FastABPGenerator.hpp:321:4: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 } ^ ./libmaus2/fastx/FastABPGenerator.hpp:321:4: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/parallel/PosixSpinLock.hpp:23, from ./libmaus2/aio/StreamLock.hpp:21, from ./libmaus2/autoarray/GenericAlignedAllocation.hpp:23, from ./libmaus2/autoarray/AutoArray.hpp:26, from ./libmaus2/bambam/BamSeqEncodeTable.hpp:22, from ./libmaus2/fastx/FastABPGenerator.hpp:22, from test/testfastablockrecode.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In function ‘int main(int, char**)’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testfastablockrecode test/testfastablockrecode-testfastablockrecode.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/arm-linux-gnueabi -lz libtool: link: arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testfastablockrecode test/testfastablockrecode-testfastablockrecode.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/arm-linux-gnueabi -lz -fopenmp -pthread arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testhttp-testhttp.o `test -f 'test/testhttp.cpp' || echo './'`test/testhttp.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testhttp test/testhttp-testhttp.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/arm-linux-gnueabi -lz libtool: link: arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testhttp test/testhttp-testhttp.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/arm-linux-gnueabi -lz -fopenmp -pthread arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testftp-testftp.o `test -f 'test/testftp.cpp' || echo './'`test/testftp.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testftp test/testftp-testftp.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/arm-linux-gnueabi -lz libtool: link: arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testftp test/testftp-testftp.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/arm-linux-gnueabi -lz -fopenmp -pthread arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testrlhist-testrlhist.o `test -f 'test/testrlhist.cpp' || echo './'`test/testrlhist.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testrlhist test/testrlhist-testrlhist.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/arm-linux-gnueabi -lz libtool: link: arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testrlhist test/testrlhist-testrlhist.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/arm-linux-gnueabi -lz -fopenmp -pthread arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testnumcpus-testnumcpus.o `test -f 'test/testnumcpus.cpp' || echo './'`test/testnumcpus.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testnumcpus test/testnumcpus-testnumcpus.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/arm-linux-gnueabi -lz libtool: link: arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testnumcpus test/testnumcpus-testnumcpus.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/arm-linux-gnueabi -lz -fopenmp -pthread arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testdiag-testdiag.o `test -f 'test/testdiag.cpp' || echo './'`test/testdiag.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testdiag test/testdiag-testdiag.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/arm-linux-gnueabi -lz libtool: link: arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testdiag test/testdiag-testdiag.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/arm-linux-gnueabi -lz -fopenmp -pthread arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testlinuxstreamingwrite-testlinuxstreamingwrite.o `test -f 'test/testlinuxstreamingwrite.cpp' || echo './'`test/testlinuxstreamingwrite.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testlinuxstreamingwrite test/testlinuxstreamingwrite-testlinuxstreamingwrite.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/arm-linux-gnueabi -lz libtool: link: arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testlinuxstreamingwrite test/testlinuxstreamingwrite-testlinuxstreamingwrite.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/arm-linux-gnueabi -lz -fopenmp -pthread arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testlowmembamheaderparser-testlowmembamheaderparser.o `test -f 'test/testlowmembamheaderparser.cpp' || echo './'`test/testlowmembamheaderparser.cpp In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/aio/PosixFdInput.hpp:40, from ./libmaus2/aio/PosixFdInputWrapper.hpp:22, from ./libmaus2/aio/PosixFdInputStream.hpp:22, from test/testlowmembamheaderparser.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from ./libmaus2/bambam/BamHeader.hpp:35, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from test/testlowmembamheaderparser.cpp:20: ./libmaus2/hashing/ConstantStringHash.hpp: In constructor ‘libmaus2::hashing::ConstantStringHash::ConstantStringHash(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]’: ./libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 ConstantStringHash(iterator ita, iterator ite, uint64_t const maxn = 64*1024) ^~~~~~~~~~~~~~~~~~ ./libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/aio/PosixFdInput.hpp:40, from ./libmaus2/aio/PosixFdInputWrapper.hpp:22, from ./libmaus2/aio/PosixFdInputStream.hpp:22, from test/testlowmembamheaderparser.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::trie::LinearTrieStateBase}; _Tp = libmaus2::trie::LinearTrieStateBase; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/lz/StreamWrapperBuffer.hpp:23, from ./libmaus2/lz/StreamWrapper.hpp:22, from ./libmaus2/aio/PosixFdInput.hpp:41, from ./libmaus2/aio/PosixFdInputWrapper.hpp:22, from ./libmaus2/aio/PosixFdInputStream.hpp:22, from test/testlowmembamheaderparser.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1880:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __final_insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1880:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/lz/StreamWrapperBuffer.hpp:23, from ./libmaus2/lz/StreamWrapper.hpp:22, from ./libmaus2/aio/PosixFdInput.hpp:41, from ./libmaus2/aio/PosixFdInputWrapper.hpp:22, from ./libmaus2/aio/PosixFdInputStream.hpp:22, from test/testlowmembamheaderparser.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/lz/StreamWrapperBuffer.hpp:23, from ./libmaus2/lz/StreamWrapper.hpp:22, from ./libmaus2/aio/PosixFdInput.hpp:41, from ./libmaus2/aio/PosixFdInputWrapper.hpp:22, from ./libmaus2/aio/PosixFdInputStream.hpp:22, from test/testlowmembamheaderparser.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/aio/PosixFdInput.hpp:40, from ./libmaus2/aio/PosixFdInputWrapper.hpp:22, from ./libmaus2/aio/PosixFdInputStream.hpp:22, from test/testlowmembamheaderparser.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘typename libmaus2::trie::LinearHashTrie<_char_type, id_type>::unique_ptr_type libmaus2::trie::Trie<_char_type>::toLinearHashTrie() const [with id_type = unsigned int; _char_type = char]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/aio/PosixFdInput.hpp:40, from ./libmaus2/aio/PosixFdInputWrapper.hpp:22, from ./libmaus2/aio/PosixFdInputStream.hpp:22, from test/testlowmembamheaderparser.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/lz/StreamWrapperBuffer.hpp:23, from ./libmaus2/lz/StreamWrapper.hpp:22, from ./libmaus2/aio/PosixFdInput.hpp:41, from ./libmaus2/aio/PosixFdInputWrapper.hpp:22, from ./libmaus2/aio/PosixFdInputStream.hpp:22, from test/testlowmembamheaderparser.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1971:31: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__final_insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/aio/PosixFdInput.hpp:40, from ./libmaus2/aio/PosixFdInputWrapper.hpp:22, from ./libmaus2/aio/PosixFdInputStream.hpp:22, from test/testlowmembamheaderparser.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In member function ‘void libmaus2::bambam::BamHeaderLowMem::setupFromText()’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/lz/StreamWrapperBuffer.hpp:23, from ./libmaus2/lz/StreamWrapper.hpp:22, from ./libmaus2/aio/PosixFdInput.hpp:41, from ./libmaus2/aio/PosixFdInputWrapper.hpp:22, from ./libmaus2/aio/PosixFdInputStream.hpp:22, from test/testlowmembamheaderparser.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1971:31: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__final_insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ./libmaus2/bambam/BamHeader.hpp:35, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from test/testlowmembamheaderparser.cpp:20: ./libmaus2/hashing/ConstantStringHash.hpp:71:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 unique_ptr_type u(new this_type(ita,ite,maxn)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ./libmaus2/bambam/BamAlignmentDecoder.hpp:24, from test/testlowmembamheaderparser.cpp:20: ./libmaus2/bambam/BamHeaderLowMem.hpp:802:4: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 } ^ /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testlowmembamheaderparser test/testlowmembamheaderparser-testlowmembamheaderparser.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/arm-linux-gnueabi -lz libtool: link: arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testlowmembamheaderparser test/testlowmembamheaderparser-testlowmembamheaderparser.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/arm-linux-gnueabi -lz -fopenmp -pthread arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testgeneflatfile-testgeneflatfile.o `test -f 'test/testgeneflatfile.cpp' || echo './'`test/testgeneflatfile.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testgeneflatfile test/testgeneflatfile-testgeneflatfile.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/arm-linux-gnueabi -lz libtool: link: arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testgeneflatfile test/testgeneflatfile-testgeneflatfile.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/arm-linux-gnueabi -lz -fopenmp -pthread arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testurlinputstream-testurlinputstream.o `test -f 'test/testurlinputstream.cpp' || echo './'`test/testurlinputstream.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testurlinputstream test/testurlinputstream-testurlinputstream.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/arm-linux-gnueabi -lz libtool: link: arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testurlinputstream test/testurlinputstream-testurlinputstream.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/arm-linux-gnueabi -lz -fopenmp -pthread arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testsimpletrie-testsimpletrie.o `test -f 'test/testsimpletrie.cpp' || echo './'`test/testsimpletrie.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testsimpletrie test/testsimpletrie-testsimpletrie.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/arm-linux-gnueabi -lz libtool: link: arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testsimpletrie test/testsimpletrie-testsimpletrie.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/arm-linux-gnueabi -lz -fopenmp -pthread arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testgnutls-testgnutls.o `test -f 'test/testgnutls.cpp' || echo './'`test/testgnutls.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testgnutls test/testgnutls-testgnutls.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/arm-linux-gnueabi -lz libtool: link: arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testgnutls test/testgnutls-testgnutls.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/arm-linux-gnueabi -lz -fopenmp -pthread arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testlru-testlru.o `test -f 'test/testlru.cpp' || echo './'`test/testlru.cpp In file included from /usr/arm-linux-gnueabi/include/c++/8/unordered_map:46, from ./libmaus2/util/unordered_map.hpp:25, from ./libmaus2/lru/SparseLRU.hpp:23, from ./libmaus2/lru/SparseLRUFileBunch.hpp:24, from test/testlru.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/hashtable.h: In member function ‘std::_Hashtable<_Key, _Value, _Alloc, _ExtractKey, _Equal, _H1, _H2, _Hash, _RehashPolicy, _Traits>::iterator std::_Hashtable<_Key, _Value, _Alloc, _ExtractKey, _Equal, _H1, _H2, _Hash, _RehashPolicy, _Traits>::erase(std::_Hashtable<_Key, _Value, _Alloc, _ExtractKey, _Equal, _H1, _H2, _Hash, _RehashPolicy, _Traits>::const_iterator) [with _Key = long long unsigned int; _Value = std::pair; _Alloc = std::allocator >; _ExtractKey = std::__detail::_Select1st; _Equal = std::equal_to; _H1 = std::hash; _H2 = std::__detail::_Mod_range_hashing; _Hash = std::__detail::_Default_ranged_hash; _RehashPolicy = std::__detail::_Prime_rehash_policy; _Traits = std::__detail::_Hashtable_traits]’: /usr/arm-linux-gnueabi/include/c++/8/bits/hashtable.h:1872:5: note: parameter passing for argument of type ‘std::_Hashtable, std::allocator >, std::__detail::_Select1st, std::equal_to, std::hash, std::__detail::_Mod_range_hashing, std::__detail::_Default_ranged_hash, std::__detail::_Prime_rehash_policy, std::__detail::_Hashtable_traits >::const_iterator’ {aka ‘std::__detail::_Node_const_iterator, false, false>’} changed in GCC 7.1 _Hashtable<_Key, _Value, _Alloc, _ExtractKey, _Equal, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ _H1, _H2, _Hash, _RehashPolicy, _Traits>:: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/map:60, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/aio/PosixFdInputOutputStreamBuffer.hpp:28, from ./libmaus2/aio/PosixFdInputOutputStream.hpp:22, from ./libmaus2/aio/PosixFdInputOutputStreamFactory.hpp:23, from ./libmaus2/aio/InputOutputStreamFactoryContainer.hpp:23, from ./libmaus2/lru/SparseLRUFileBunch.hpp:22, from test/testlru.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h: In member function ‘void std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_erase_aux(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator) [with _Key = long long unsigned int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:2489:5: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/unordered_map:46, from ./libmaus2/util/unordered_map.hpp:25, from ./libmaus2/lru/SparseLRU.hpp:23, from ./libmaus2/lru/SparseLRUFileBunch.hpp:24, from test/testlru.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/hashtable.h: In member function ‘int64_t libmaus2::lru::SparseLRU::get(uint64_t)’: /usr/arm-linux-gnueabi/include/c++/8/bits/hashtable.h:762:42: note: parameter passing for argument of type ‘std::_Hashtable, std::allocator >, std::__detail::_Select1st, std::equal_to, std::hash, std::__detail::_Mod_range_hashing, std::__detail::_Default_ranged_hash, std::__detail::_Prime_rehash_policy, std::__detail::_Hashtable_traits >::const_iterator’ {aka ‘std::__detail::_Node_const_iterator, false, false>’} changed in GCC 7.1 { return erase(const_iterator(__it)); } ^ In file included from /usr/arm-linux-gnueabi/include/c++/8/map:60, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/aio/PosixFdInputOutputStreamBuffer.hpp:28, from ./libmaus2/aio/PosixFdInputOutputStream.hpp:22, from ./libmaus2/aio/PosixFdInputOutputStreamFactory.hpp:23, from ./libmaus2/aio/InputOutputStreamFactoryContainer.hpp:23, from ./libmaus2/lru/SparseLRUFileBunch.hpp:22, from test/testlru.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/map:61, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/aio/PosixFdInputOutputStreamBuffer.hpp:28, from ./libmaus2/aio/PosixFdInputOutputStream.hpp:22, from ./libmaus2/aio/PosixFdInputOutputStreamFactory.hpp:23, from ./libmaus2/aio/InputOutputStreamFactoryContainer.hpp:23, from ./libmaus2/lru/SparseLRUFileBunch.hpp:22, from test/testlru.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabi/include/c++/8/map:60, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/aio/PosixFdInputOutputStreamBuffer.hpp:28, from ./libmaus2/aio/PosixFdInputOutputStream.hpp:22, from ./libmaus2/aio/PosixFdInputOutputStreamFactory.hpp:23, from ./libmaus2/aio/InputOutputStreamFactoryContainer.hpp:23, from ./libmaus2/lru/SparseLRUFileBunch.hpp:22, from test/testlru.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/unordered_map:46, from ./libmaus2/util/unordered_map.hpp:25, from ./libmaus2/lru/SparseLRU.hpp:23, from ./libmaus2/lru/SparseLRUFileBunch.hpp:24, from test/testlru.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/hashtable.h:762:42: note: parameter passing for argument of type ‘std::_Hashtable, std::allocator >, std::__detail::_Select1st, std::equal_to, std::hash, std::__detail::_Mod_range_hashing, std::__detail::_Default_ranged_hash, std::__detail::_Prime_rehash_policy, std::__detail::_Hashtable_traits >::const_iterator’ {aka ‘std::__detail::_Node_const_iterator, false, false>’} changed in GCC 7.1 { return erase(const_iterator(__it)); } ^ In file included from /usr/arm-linux-gnueabi/include/c++/8/map:61, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/aio/PosixFdInputOutputStreamBuffer.hpp:28, from ./libmaus2/aio/PosixFdInputOutputStream.hpp:22, from ./libmaus2/aio/PosixFdInputOutputStreamFactory.hpp:23, from ./libmaus2/aio/InputOutputStreamFactoryContainer.hpp:23, from ./libmaus2/lru/SparseLRUFileBunch.hpp:22, from test/testlru.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabi/include/c++/8/map:60, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/aio/PosixFdInputOutputStreamBuffer.hpp:28, from ./libmaus2/aio/PosixFdInputOutputStream.hpp:22, from ./libmaus2/aio/PosixFdInputOutputStreamFactory.hpp:23, from ./libmaus2/aio/InputOutputStreamFactoryContainer.hpp:23, from ./libmaus2/lru/SparseLRUFileBunch.hpp:22, from test/testlru.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/unordered_map:46, from ./libmaus2/util/unordered_map.hpp:25, from ./libmaus2/lru/SparseLRU.hpp:23, from ./libmaus2/lru/SparseLRUFileBunch.hpp:24, from test/testlru.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/hashtable.h: In function ‘void testlrusparsefile(uint64_t, uint64_t)’: /usr/arm-linux-gnueabi/include/c++/8/bits/hashtable.h:762:42: note: parameter passing for argument of type ‘std::_Hashtable, std::allocator >, std::__detail::_Select1st, std::equal_to, std::hash, std::__detail::_Mod_range_hashing, std::__detail::_Default_ranged_hash, std::__detail::_Prime_rehash_policy, std::__detail::_Hashtable_traits >::const_iterator’ {aka ‘std::__detail::_Node_const_iterator, false, false>’} changed in GCC 7.1 { return erase(const_iterator(__it)); } ^ In file included from /usr/arm-linux-gnueabi/include/c++/8/map:60, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/aio/PosixFdInputOutputStreamBuffer.hpp:28, from ./libmaus2/aio/PosixFdInputOutputStream.hpp:22, from ./libmaus2/aio/PosixFdInputOutputStreamFactory.hpp:23, from ./libmaus2/aio/InputOutputStreamFactoryContainer.hpp:23, from ./libmaus2/lru/SparseLRUFileBunch.hpp:22, from test/testlru.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/unordered_map:46, from ./libmaus2/util/unordered_map.hpp:25, from ./libmaus2/lru/SparseLRU.hpp:23, from ./libmaus2/lru/SparseLRUFileBunch.hpp:24, from test/testlru.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/hashtable.h:762:42: note: parameter passing for argument of type ‘std::_Hashtable, std::allocator >, std::__detail::_Select1st, std::equal_to, std::hash, std::__detail::_Mod_range_hashing, std::__detail::_Default_ranged_hash, std::__detail::_Prime_rehash_policy, std::__detail::_Hashtable_traits >::const_iterator’ {aka ‘std::__detail::_Node_const_iterator, false, false>’} changed in GCC 7.1 { return erase(const_iterator(__it)); } ^ In file included from /usr/arm-linux-gnueabi/include/c++/8/map:60, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/aio/PosixFdInputOutputStreamBuffer.hpp:28, from ./libmaus2/aio/PosixFdInputOutputStream.hpp:22, from ./libmaus2/aio/PosixFdInputOutputStreamFactory.hpp:23, from ./libmaus2/aio/InputOutputStreamFactoryContainer.hpp:23, from ./libmaus2/lru/SparseLRUFileBunch.hpp:22, from test/testlru.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/map:61, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/aio/PosixFdInputOutputStreamBuffer.hpp:28, from ./libmaus2/aio/PosixFdInputOutputStream.hpp:22, from ./libmaus2/aio/PosixFdInputOutputStreamFactory.hpp:23, from ./libmaus2/aio/InputOutputStreamFactoryContainer.hpp:23, from ./libmaus2/lru/SparseLRUFileBunch.hpp:22, from test/testlru.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabi/include/c++/8/map:60, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/aio/PosixFdInputOutputStreamBuffer.hpp:28, from ./libmaus2/aio/PosixFdInputOutputStream.hpp:22, from ./libmaus2/aio/PosixFdInputOutputStreamFactory.hpp:23, from ./libmaus2/aio/InputOutputStreamFactoryContainer.hpp:23, from ./libmaus2/lru/SparseLRUFileBunch.hpp:22, from test/testlru.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/unordered_map:46, from ./libmaus2/util/unordered_map.hpp:25, from ./libmaus2/lru/SparseLRU.hpp:23, from ./libmaus2/lru/SparseLRUFileBunch.hpp:24, from test/testlru.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/hashtable.h:762:42: note: parameter passing for argument of type ‘std::_Hashtable, std::allocator >, std::__detail::_Select1st, std::equal_to, std::hash, std::__detail::_Mod_range_hashing, std::__detail::_Default_ranged_hash, std::__detail::_Prime_rehash_policy, std::__detail::_Hashtable_traits >::const_iterator’ {aka ‘std::__detail::_Node_const_iterator, false, false>’} changed in GCC 7.1 { return erase(const_iterator(__it)); } ^ In file included from /usr/arm-linux-gnueabi/include/c++/8/map:61, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/aio/PosixFdInputOutputStreamBuffer.hpp:28, from ./libmaus2/aio/PosixFdInputOutputStream.hpp:22, from ./libmaus2/aio/PosixFdInputOutputStreamFactory.hpp:23, from ./libmaus2/aio/InputOutputStreamFactoryContainer.hpp:23, from ./libmaus2/lru/SparseLRUFileBunch.hpp:22, from test/testlru.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabi/include/c++/8/unordered_map:46, from ./libmaus2/util/unordered_map.hpp:25, from ./libmaus2/lru/SparseLRU.hpp:23, from ./libmaus2/lru/SparseLRUFileBunch.hpp:24, from test/testlru.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/hashtable.h:762:42: note: parameter passing for argument of type ‘std::_Hashtable, std::allocator >, std::__detail::_Select1st, std::equal_to, std::hash, std::__detail::_Mod_range_hashing, std::__detail::_Default_ranged_hash, std::__detail::_Prime_rehash_policy, std::__detail::_Hashtable_traits >::const_iterator’ {aka ‘std::__detail::_Node_const_iterator, false, false>’} changed in GCC 7.1 { return erase(const_iterator(__it)); } ^ In file included from /usr/arm-linux-gnueabi/include/c++/8/map:60, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/aio/PosixFdInputOutputStreamBuffer.hpp:28, from ./libmaus2/aio/PosixFdInputOutputStream.hpp:22, from ./libmaus2/aio/PosixFdInputOutputStreamFactory.hpp:23, from ./libmaus2/aio/InputOutputStreamFactoryContainer.hpp:23, from ./libmaus2/lru/SparseLRUFileBunch.hpp:22, from test/testlru.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/map:61, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/aio/PosixFdInputOutputStreamBuffer.hpp:28, from ./libmaus2/aio/PosixFdInputOutputStream.hpp:22, from ./libmaus2/aio/PosixFdInputOutputStreamFactory.hpp:23, from ./libmaus2/aio/InputOutputStreamFactoryContainer.hpp:23, from ./libmaus2/lru/SparseLRUFileBunch.hpp:22, from test/testlru.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabi/include/c++/8/map:60, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/aio/PosixFdInputOutputStreamBuffer.hpp:28, from ./libmaus2/aio/PosixFdInputOutputStream.hpp:22, from ./libmaus2/aio/PosixFdInputOutputStreamFactory.hpp:23, from ./libmaus2/aio/InputOutputStreamFactoryContainer.hpp:23, from ./libmaus2/lru/SparseLRUFileBunch.hpp:22, from test/testlru.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/unordered_map:46, from ./libmaus2/util/unordered_map.hpp:25, from ./libmaus2/lru/SparseLRU.hpp:23, from ./libmaus2/lru/SparseLRUFileBunch.hpp:24, from test/testlru.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/hashtable.h:762:42: note: parameter passing for argument of type ‘std::_Hashtable, std::allocator >, std::__detail::_Select1st, std::equal_to, std::hash, std::__detail::_Mod_range_hashing, std::__detail::_Default_ranged_hash, std::__detail::_Prime_rehash_policy, std::__detail::_Hashtable_traits >::const_iterator’ {aka ‘std::__detail::_Node_const_iterator, false, false>’} changed in GCC 7.1 { return erase(const_iterator(__it)); } ^ In file included from /usr/arm-linux-gnueabi/include/c++/8/map:61, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/aio/PosixFdInputOutputStreamBuffer.hpp:28, from ./libmaus2/aio/PosixFdInputOutputStream.hpp:22, from ./libmaus2/aio/PosixFdInputOutputStreamFactory.hpp:23, from ./libmaus2/aio/InputOutputStreamFactoryContainer.hpp:23, from ./libmaus2/lru/SparseLRUFileBunch.hpp:22, from test/testlru.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabi/include/c++/8/unordered_map:46, from ./libmaus2/util/unordered_map.hpp:25, from ./libmaus2/lru/SparseLRU.hpp:23, from ./libmaus2/lru/SparseLRUFileBunch.hpp:24, from test/testlru.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/hashtable.h:762:42: note: parameter passing for argument of type ‘std::_Hashtable, std::allocator >, std::__detail::_Select1st, std::equal_to, std::hash, std::__detail::_Mod_range_hashing, std::__detail::_Default_ranged_hash, std::__detail::_Prime_rehash_policy, std::__detail::_Hashtable_traits >::const_iterator’ {aka ‘std::__detail::_Node_const_iterator, false, false>’} changed in GCC 7.1 { return erase(const_iterator(__it)); } ^ In file included from /usr/arm-linux-gnueabi/include/c++/8/map:60, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/aio/PosixFdInputOutputStreamBuffer.hpp:28, from ./libmaus2/aio/PosixFdInputOutputStream.hpp:22, from ./libmaus2/aio/PosixFdInputOutputStreamFactory.hpp:23, from ./libmaus2/aio/InputOutputStreamFactoryContainer.hpp:23, from ./libmaus2/lru/SparseLRUFileBunch.hpp:22, from test/testlru.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/unordered_map:46, from ./libmaus2/util/unordered_map.hpp:25, from ./libmaus2/lru/SparseLRU.hpp:23, from ./libmaus2/lru/SparseLRUFileBunch.hpp:24, from test/testlru.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/hashtable.h: In function ‘int main()’: /usr/arm-linux-gnueabi/include/c++/8/bits/hashtable.h:762:42: note: parameter passing for argument of type ‘std::_Hashtable, std::allocator >, std::__detail::_Select1st, std::equal_to, std::hash, std::__detail::_Mod_range_hashing, std::__detail::_Default_ranged_hash, std::__detail::_Prime_rehash_policy, std::__detail::_Hashtable_traits >::const_iterator’ {aka ‘std::__detail::_Node_const_iterator, false, false>’} changed in GCC 7.1 { return erase(const_iterator(__it)); } ^ In file included from /usr/arm-linux-gnueabi/include/c++/8/map:60, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/aio/PosixFdInputOutputStreamBuffer.hpp:28, from ./libmaus2/aio/PosixFdInputOutputStream.hpp:22, from ./libmaus2/aio/PosixFdInputOutputStreamFactory.hpp:23, from ./libmaus2/aio/InputOutputStreamFactoryContainer.hpp:23, from ./libmaus2/lru/SparseLRUFileBunch.hpp:22, from test/testlru.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/map:61, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/aio/PosixFdInputOutputStreamBuffer.hpp:28, from ./libmaus2/aio/PosixFdInputOutputStream.hpp:22, from ./libmaus2/aio/PosixFdInputOutputStreamFactory.hpp:23, from ./libmaus2/aio/InputOutputStreamFactoryContainer.hpp:23, from ./libmaus2/lru/SparseLRUFileBunch.hpp:22, from test/testlru.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabi/include/c++/8/map:60, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/aio/PosixFdInputOutputStreamBuffer.hpp:28, from ./libmaus2/aio/PosixFdInputOutputStream.hpp:22, from ./libmaus2/aio/PosixFdInputOutputStreamFactory.hpp:23, from ./libmaus2/aio/InputOutputStreamFactoryContainer.hpp:23, from ./libmaus2/lru/SparseLRUFileBunch.hpp:22, from test/testlru.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/unordered_map:46, from ./libmaus2/util/unordered_map.hpp:25, from ./libmaus2/lru/SparseLRU.hpp:23, from ./libmaus2/lru/SparseLRUFileBunch.hpp:24, from test/testlru.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/hashtable.h:762:42: note: parameter passing for argument of type ‘std::_Hashtable, std::allocator >, std::__detail::_Select1st, std::equal_to, std::hash, std::__detail::_Mod_range_hashing, std::__detail::_Default_ranged_hash, std::__detail::_Prime_rehash_policy, std::__detail::_Hashtable_traits >::const_iterator’ {aka ‘std::__detail::_Node_const_iterator, false, false>’} changed in GCC 7.1 { return erase(const_iterator(__it)); } ^ In file included from /usr/arm-linux-gnueabi/include/c++/8/map:61, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/aio/PosixFdInputOutputStreamBuffer.hpp:28, from ./libmaus2/aio/PosixFdInputOutputStream.hpp:22, from ./libmaus2/aio/PosixFdInputOutputStreamFactory.hpp:23, from ./libmaus2/aio/InputOutputStreamFactoryContainer.hpp:23, from ./libmaus2/lru/SparseLRUFileBunch.hpp:22, from test/testlru.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testlru test/testlru-testlru.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/arm-linux-gnueabi -lz libtool: link: arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testlru test/testlru-testlru.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/arm-linux-gnueabi -lz -fopenmp -pthread arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testbytecnt-testbytecnt.o `test -f 'test/testbytecnt.cpp' || echo './'`test/testbytecnt.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testbytecnt test/testbytecnt-testbytecnt.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/arm-linux-gnueabi -lz libtool: link: arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testbytecnt test/testbytecnt-testbytecnt.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/arm-linux-gnueabi -lz -fopenmp -pthread arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/teststronglyconnectedcomponents-teststronglyconnectedcomponents.o `test -f 'test/teststronglyconnectedcomponents.cpp' || echo './'`test/teststronglyconnectedcomponents.cpp In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/graph/StronglyConnectedComponents.hpp:22, from test/teststronglyconnectedcomponents.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/map:60, from ./libmaus2/graph/StronglyConnectedComponents.hpp:23, from test/teststronglyconnectedcomponents.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h: In member function ‘std::pair std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:2149:5: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/graph/StronglyConnectedComponents.hpp:26, from test/teststronglyconnectedcomponents.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/graph/StronglyConnectedComponents.hpp:26, from test/teststronglyconnectedcomponents.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/graph/StronglyConnectedComponents.hpp:26, from test/teststronglyconnectedcomponents.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/map:61, from ./libmaus2/graph/StronglyConnectedComponents.hpp:23, from test/teststronglyconnectedcomponents.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h: In static member function ‘static std::pair, std::vector > libmaus2::graph::StronglyConnectedComponents::strongConnectContract(const std::map >&, uint64_t, projector_type) [with edge_type = long long unsigned int; projector_type = libmaus2::graph::IdentityTargetProjector]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/graph/StronglyConnectedComponents.hpp:26, from test/teststronglyconnectedcomponents.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/map:61, from ./libmaus2/graph/StronglyConnectedComponents.hpp:23, from test/teststronglyconnectedcomponents.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/graph/StronglyConnectedComponents.hpp:22, from test/teststronglyconnectedcomponents.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/map:61, from ./libmaus2/graph/StronglyConnectedComponents.hpp:23, from test/teststronglyconnectedcomponents.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/graph/StronglyConnectedComponents.hpp:22, from test/teststronglyconnectedcomponents.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/graph/StronglyConnectedComponents.hpp:26, from test/teststronglyconnectedcomponents.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/graph/StronglyConnectedComponents.hpp:22, from test/teststronglyconnectedcomponents.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/graph/StronglyConnectedComponents.hpp:26, from test/teststronglyconnectedcomponents.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/map:61, from ./libmaus2/graph/StronglyConnectedComponents.hpp:23, from test/teststronglyconnectedcomponents.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h: In function ‘void testStronglyConnectedComponents()’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:518:8: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:518:8: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:518:8: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:518:8: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:518:8: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:518:8: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:518:8: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:518:8: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:518:8: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:518:8: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:518:8: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:518:8: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:518:8: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:518:8: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:518:8: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:518:8: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:518:8: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:518:8: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o teststronglyconnectedcomponents test/teststronglyconnectedcomponents-teststronglyconnectedcomponents.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/arm-linux-gnueabi -lz libtool: link: arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/teststronglyconnectedcomponents test/teststronglyconnectedcomponents-teststronglyconnectedcomponents.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/arm-linux-gnueabi -lz -fopenmp -pthread arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testtopologicalsorting-testtopologicalsorting.o `test -f 'test/testtopologicalsorting.cpp' || echo './'`test/testtopologicalsorting.cpp In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/graph/ReachableVertices.hpp:24, from ./libmaus2/graph/TopologicalSorting.hpp:22, from test/testtopologicalsorting.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/set:60, from ./libmaus2/graph/ReachableVertices.hpp:22, from ./libmaus2/graph/TopologicalSorting.hpp:22, from test/testtopologicalsorting.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h: In member function ‘void std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_erase_aux(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator) [with _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:2489:5: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/map:61, from ./libmaus2/graph/ReachableVertices.hpp:23, from ./libmaus2/graph/TopologicalSorting.hpp:22, from test/testtopologicalsorting.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h: In static member function ‘static std::pair > libmaus2::graph::TopologicalSorting::topologicalSorting(const std::map >&, uint64_t, projector_type) [with edge_type = long long unsigned int; projector_type = libmaus2::graph::IdentityTargetProjector]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabi/include/c++/8/set:60, from ./libmaus2/graph/ReachableVertices.hpp:22, from ./libmaus2/graph/TopologicalSorting.hpp:22, from test/testtopologicalsorting.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/map:61, from ./libmaus2/graph/ReachableVertices.hpp:23, from ./libmaus2/graph/TopologicalSorting.hpp:22, from test/testtopologicalsorting.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabi/include/c++/8/set:60, from ./libmaus2/graph/ReachableVertices.hpp:22, from ./libmaus2/graph/TopologicalSorting.hpp:22, from test/testtopologicalsorting.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testtopologicalsorting test/testtopologicalsorting-testtopologicalsorting.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/arm-linux-gnueabi -lz libtool: link: arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testtopologicalsorting test/testtopologicalsorting-testtopologicalsorting.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/arm-linux-gnueabi -lz -fopenmp -pthread arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testlinebuffer-testlinebuffer.o `test -f 'test/testlinebuffer.cpp' || echo './'`test/testlinebuffer.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testlinebuffer test/testlinebuffer-testlinebuffer.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/arm-linux-gnueabi -lz libtool: link: arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testlinebuffer test/testlinebuffer-testlinebuffer.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/arm-linux-gnueabi -lz -fopenmp -pthread arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testsamdecoder-testsamdecoder.o `test -f 'test/testsamdecoder.cpp' || echo './'`test/testsamdecoder.cpp In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/aio/PosixFdInput.hpp:40, from ./libmaus2/aio/PosixFdInputWrapper.hpp:22, from ./libmaus2/aio/PosixFdInputStream.hpp:22, from test/testsamdecoder.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::ReadGroup&}; _Tp = libmaus2::bambam::ReadGroup; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 In file included from ./libmaus2/bambam/BamHeader.hpp:35, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from ./libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from ./libmaus2/bambam/BamWriter.hpp:22, from ./libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from test/testsamdecoder.cpp:21: ./libmaus2/hashing/ConstantStringHash.hpp: In constructor ‘libmaus2::hashing::ConstantStringHash::ConstantStringHash(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]’: ./libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 ConstantStringHash(iterator ita, iterator ite, uint64_t const maxn = 64*1024) ^~~~~~~~~~~~~~~~~~ ./libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 ./libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/aio/PosixFdInput.hpp:40, from ./libmaus2/aio/PosixFdInputWrapper.hpp:22, from ./libmaus2/aio/PosixFdInputStream.hpp:22, from test/testsamdecoder.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::lz::BgzfThreadQueueElement&}; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector >::iterator’ {aka ‘__gnu_cxx::__normal_iterator > >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/lz/StreamWrapperBuffer.hpp:23, from ./libmaus2/lz/StreamWrapper.hpp:22, from ./libmaus2/aio/PosixFdInput.hpp:41, from ./libmaus2/aio/PosixFdInputWrapper.hpp:22, from ./libmaus2/aio/PosixFdInputStream.hpp:22, from test/testsamdecoder.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Compare = __gnu_cxx::__ops::_Iter_comp_val]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/aio/PosixFdInput.hpp:40, from ./libmaus2/aio/PosixFdInputWrapper.hpp:22, from ./libmaus2/aio/PosixFdInputStream.hpp:22, from test/testsamdecoder.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In member function ‘void libmaus2::parallel::TerminatableSynchronousHeap<_value_type, _compare>::enque(libmaus2::parallel::TerminatableSynchronousHeap<_value_type, _compare>::value_type) [with _value_type = libmaus2::lz::BgzfThreadQueueElement; _compare = libmaus2::lz::BgzfThreadQueueElementHeapComparator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/lz/StreamWrapperBuffer.hpp:23, from ./libmaus2/lz/StreamWrapper.hpp:22, from ./libmaus2/aio/PosixFdInput.hpp:41, from ./libmaus2/aio/PosixFdInputWrapper.hpp:22, from ./libmaus2/aio/PosixFdInputStream.hpp:22, from test/testsamdecoder.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Compare = __gnu_cxx::__ops::_Iter_comp_val]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/aio/PosixFdInput.hpp:40, from ./libmaus2/aio/PosixFdInputWrapper.hpp:22, from ./libmaus2/aio/PosixFdInputStream.hpp:22, from test/testsamdecoder.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::trie::LinearTrieStateBase}; _Tp = libmaus2::trie::LinearTrieStateBase; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/lz/StreamWrapperBuffer.hpp:23, from ./libmaus2/lz/StreamWrapper.hpp:22, from ./libmaus2/aio/PosixFdInput.hpp:41, from ./libmaus2/aio/PosixFdInputWrapper.hpp:22, from ./libmaus2/aio/PosixFdInputStream.hpp:22, from test/testsamdecoder.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/aio/PosixFdInput.hpp:40, from ./libmaus2/aio/PosixFdInputWrapper.hpp:22, from ./libmaus2/aio/PosixFdInputStream.hpp:22, from test/testsamdecoder.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In static member function ‘static std::vector libmaus2::bambam::BamHeader::getReadGroups(const string&)’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/lz/StreamWrapperBuffer.hpp:23, from ./libmaus2/lz/StreamWrapper.hpp:22, from ./libmaus2/aio/PosixFdInput.hpp:41, from ./libmaus2/aio/PosixFdInputWrapper.hpp:22, from ./libmaus2/aio/PosixFdInputStream.hpp:22, from test/testsamdecoder.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/aio/PosixFdInput.hpp:40, from ./libmaus2/aio/PosixFdInputWrapper.hpp:22, from ./libmaus2/aio/PosixFdInputStream.hpp:22, from test/testsamdecoder.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In member function ‘virtual void* libmaus2::lz::BgzfDeflateParallelThread::run()’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/aio/PosixFdInput.hpp:40, from ./libmaus2/aio/PosixFdInputWrapper.hpp:22, from ./libmaus2/aio/PosixFdInputStream.hpp:22, from test/testsamdecoder.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/lz/StreamWrapperBuffer.hpp:23, from ./libmaus2/lz/StreamWrapper.hpp:22, from ./libmaus2/aio/PosixFdInput.hpp:41, from ./libmaus2/aio/PosixFdInputWrapper.hpp:22, from ./libmaus2/aio/PosixFdInputStream.hpp:22, from test/testsamdecoder.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/lz/StreamWrapperBuffer.hpp:23, from ./libmaus2/lz/StreamWrapper.hpp:22, from ./libmaus2/aio/PosixFdInput.hpp:41, from ./libmaus2/aio/PosixFdInputWrapper.hpp:22, from ./libmaus2/aio/PosixFdInputStream.hpp:22, from test/testsamdecoder.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/aio/PosixFdInput.hpp:40, from ./libmaus2/aio/PosixFdInputWrapper.hpp:22, from ./libmaus2/aio/PosixFdInputStream.hpp:22, from test/testsamdecoder.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In member function ‘void libmaus2::trie::LinearHashTrie<_char_type, _id_type>::fillDepthParent() [with _char_type = char; _id_type = unsigned int]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/lz/StreamWrapperBuffer.hpp:23, from ./libmaus2/lz/StreamWrapper.hpp:22, from ./libmaus2/aio/PosixFdInput.hpp:41, from ./libmaus2/aio/PosixFdInputWrapper.hpp:22, from ./libmaus2/aio/PosixFdInputStream.hpp:22, from test/testsamdecoder.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/aio/PosixFdInput.hpp:40, from ./libmaus2/aio/PosixFdInputWrapper.hpp:22, from ./libmaus2/aio/PosixFdInputStream.hpp:22, from test/testsamdecoder.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘typename libmaus2::trie::LinearHashTrie<_char_type, id_type>::unique_ptr_type libmaus2::trie::Trie<_char_type>::toLinearHashTrie() const [with id_type = unsigned int; _char_type = char]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/aio/PosixFdInput.hpp:40, from ./libmaus2/aio/PosixFdInputWrapper.hpp:22, from ./libmaus2/aio/PosixFdInputStream.hpp:22, from test/testsamdecoder.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from ./libmaus2/bambam/BamHeader.hpp:35, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from ./libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from ./libmaus2/bambam/BamWriter.hpp:22, from ./libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from test/testsamdecoder.cpp:21: ./libmaus2/hashing/ConstantStringHash.hpp: In member function ‘void libmaus2::bambam::BamHeader::initSetup()’: ./libmaus2/hashing/ConstantStringHash.hpp:86:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 shared_ptr_type s(new this_type(ita,ite,maxn)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/aio/PosixFdInput.hpp:40, from ./libmaus2/aio/PosixFdInputWrapper.hpp:22, from ./libmaus2/aio/PosixFdInputStream.hpp:22, from test/testsamdecoder.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void libmaus2::bambam::BamHeader::init(stream_type&) [with stream_type = std::__cxx11::basic_istringstream]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testsamdecoder test/testsamdecoder-testsamdecoder.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -ldl -lrt -L/usr/lib/arm-linux-gnueabi -lz libtool: link: arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testsamdecoder test/testsamdecoder-testsamdecoder.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -ldl -lrt -L/usr/lib/arm-linux-gnueabi -lz -fopenmp -pthread arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testdecimalnumberparser-testdecimalnumberparser.o `test -f 'test/testdecimalnumberparser.cpp' || echo './'`test/testdecimalnumberparser.cpp In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/parallel/PosixSpinLock.hpp:23, from ./libmaus2/aio/StreamLock.hpp:21, from ./libmaus2/autoarray/GenericAlignedAllocation.hpp:23, from ./libmaus2/autoarray/AutoArray.hpp:26, from ./libmaus2/math/DecimalNumberParser.hpp:22, from test/testdecimalnumberparser.cpp:21: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In constructor ‘libmaus2::math::DecimalNumberParser::DecimalNumberParser()’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from test/testdecimalnumberparser.cpp:21: ./libmaus2/math/DecimalNumberParser.hpp:140:4: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 } ^ ./libmaus2/math/DecimalNumberParser.hpp:140:4: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 ./libmaus2/math/DecimalNumberParser.hpp:140:4: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 ./libmaus2/math/DecimalNumberParser.hpp:140:4: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 ./libmaus2/math/DecimalNumberParser.hpp:140:4: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 ./libmaus2/math/DecimalNumberParser.hpp:140:4: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 ./libmaus2/math/DecimalNumberParser.hpp:140:4: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 ./libmaus2/math/DecimalNumberParser.hpp:140:4: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 ./libmaus2/math/DecimalNumberParser.hpp:140:4: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 ./libmaus2/math/DecimalNumberParser.hpp:140:4: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 ./libmaus2/math/DecimalNumberParser.hpp:140:4: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 ./libmaus2/math/DecimalNumberParser.hpp:140:4: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 ./libmaus2/math/DecimalNumberParser.hpp:140:4: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 ./libmaus2/math/DecimalNumberParser.hpp:140:4: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 ./libmaus2/math/DecimalNumberParser.hpp:140:4: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 ./libmaus2/math/DecimalNumberParser.hpp:140:4: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testdecimalnumberparser test/testdecimalnumberparser-testdecimalnumberparser.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/arm-linux-gnueabi -lz libtool: link: arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testdecimalnumberparser test/testdecimalnumberparser-testdecimalnumberparser.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/arm-linux-gnueabi -lz -fopenmp -pthread arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testunsignedinteger-testunsignedinteger.o `test -f 'test/testunsignedinteger.cpp' || echo './'`test/testunsignedinteger.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testunsignedinteger test/testunsignedinteger-testunsignedinteger.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/arm-linux-gnueabi -lz libtool: link: arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testunsignedinteger test/testunsignedinteger-testunsignedinteger.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/arm-linux-gnueabi -lz -fopenmp -pthread arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testmd5-testmd5.o `test -f 'test/testmd5.cpp' || echo './'`test/testmd5.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testmd5 test/testmd5-testmd5.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/arm-linux-gnueabi -lz libtool: link: arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testmd5 test/testmd5-testmd5.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/arm-linux-gnueabi -lz -fopenmp -pthread arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testsha-testsha.o `test -f 'test/testsha.cpp' || echo './'`test/testsha.cpp arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/digest/libmaus2digests_a-SHA2_256_sse4.o `test -f 'libmaus2/digest/SHA2_256_sse4.cpp' || echo './'`libmaus2/digest/SHA2_256_sse4.cpp arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/digest/libmaus2digests_a-SHA2_512_sse4.o `test -f 'libmaus2/digest/SHA2_512_sse4.cpp' || echo './'`libmaus2/digest/SHA2_512_sse4.cpp arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/digest/libmaus2digests_a-DigestFactory_SHA2_ASM.o `test -f 'libmaus2/digest/DigestFactory_SHA2_ASM.cpp' || echo './'`libmaus2/digest/DigestFactory_SHA2_ASM.cpp rm -f libmaus2digests.a arm-linux-gnueabi-ar cru libmaus2digests.a libmaus2/digest/libmaus2digests_a-SHA2_256_sse4.o libmaus2/digest/libmaus2digests_a-SHA2_512_sse4.o libmaus2/digest/libmaus2digests_a-DigestFactory_SHA2_ASM.o arm-linux-gnueabi-ar: `u' modifier ignored since `D' is the default (see `U') arm-linux-gnueabi-ranlib libmaus2digests.a arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/digest/libmaus2digests_sse4_a-CRC32C_sse42.o `test -f 'libmaus2/digest/CRC32C_sse42.cpp' || echo './'`libmaus2/digest/CRC32C_sse42.cpp libmaus2/digest/CRC32C_sse42.cpp: In member function ‘void libmaus2::digest::CRC32C_sse42::update(const uint8_t*, size_t)’: libmaus2/digest/CRC32C_sse42.cpp:70:61: warning: unused parameter ‘t’ [-Wunused-parameter] void libmaus2::digest::CRC32C_sse42::update(uint8_t const * t, size_t l) ~~~~~~~~~~~~~~~~^ libmaus2/digest/CRC32C_sse42.cpp:70:71: warning: unused parameter ‘l’ [-Wunused-parameter] void libmaus2::digest::CRC32C_sse42::update(uint8_t const * t, size_t l) ~~~~~~~^ arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/digest/libmaus2digests_sse4_a-DigestFactory_CRC32C_SSE42.o `test -f 'libmaus2/digest/DigestFactory_CRC32C_SSE42.cpp' || echo './'`libmaus2/digest/DigestFactory_CRC32C_SSE42.cpp rm -f libmaus2digests_sse4.a arm-linux-gnueabi-ar cru libmaus2digests_sse4.a libmaus2/digest/libmaus2digests_sse4_a-CRC32C_sse42.o libmaus2/digest/libmaus2digests_sse4_a-DigestFactory_CRC32C_SSE42.o arm-linux-gnueabi-ar: `u' modifier ignored since `D' is the default (see `U') arm-linux-gnueabi-ranlib libmaus2digests_sse4.a /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testsha test/testsha-testsha.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la libmaus2digests.a libmaus2digests_sse4.a -lrt -L/usr/lib/arm-linux-gnueabi -lz libtool: link: arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testsha test/testsha-testsha.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so libmaus2digests.a libmaus2digests_sse4.a -lrt -L/usr/lib/arm-linux-gnueabi -lz -fopenmp -pthread arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testsinglefileserver-testsinglefileserver.o `test -f 'test/testsinglefileserver.cpp' || echo './'`test/testsinglefileserver.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testsinglefileserver test/testsinglefileserver-testsinglefileserver.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/arm-linux-gnueabi -lz libtool: link: arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testsinglefileserver test/testsinglefileserver-testsinglefileserver.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/arm-linux-gnueabi -lz -fopenmp -pthread arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testparallelbamvalidation-testparallelbamvalidation.o `test -f 'test/testparallelbamvalidation.cpp' || echo './'`test/testparallelbamvalidation.cpp In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/parallel/PosixSpinLock.hpp:23, from ./libmaus2/aio/StreamLock.hpp:21, from ./libmaus2/autoarray/GenericAlignedAllocation.hpp:23, from ./libmaus2/autoarray/AutoArray.hpp:26, from ./libmaus2/lz/BgzfInflateHeaderBase.hpp:28, from ./libmaus2/bambam/parallel/InputBlock.hpp:22, from ./libmaus2/bambam/parallel/ControlInputInfo.hpp:22, from test/testparallelbamvalidation.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from ./libmaus2/bambam/BamHeaderLowMem.hpp:25, from ./libmaus2/bambam/parallel/ParseInfo.hpp:22, from test/testparallelbamvalidation.cpp:41: ./libmaus2/hashing/ConstantStringHash.hpp: In constructor ‘libmaus2::hashing::ConstantStringHash::ConstantStringHash(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]’: ./libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 ConstantStringHash(iterator ita, iterator ite, uint64_t const maxn = 64*1024) ^~~~~~~~~~~~~~~~~~ ./libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/arm-linux-gnueabi/include/c++/8/map:60, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/lz/BgzfInflateHeaderBase.hpp:28, from ./libmaus2/bambam/parallel/InputBlock.hpp:22, from ./libmaus2/bambam/parallel/ControlInputInfo.hpp:22, from test/testparallelbamvalidation.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/map:61, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/lz/BgzfInflateHeaderBase.hpp:28, from ./libmaus2/bambam/parallel/InputBlock.hpp:22, from ./libmaus2/bambam/parallel/ControlInputInfo.hpp:22, from test/testparallelbamvalidation.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = long long unsigned int; _Compare = std::less; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h: In member function ‘virtual void libmaus2::parallel::SimpleThreadPool::setTaskId(uint64_t, uint64_t)’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/parallel/PosixSpinLock.hpp:23, from ./libmaus2/aio/StreamLock.hpp:21, from ./libmaus2/autoarray/GenericAlignedAllocation.hpp:23, from ./libmaus2/autoarray/AutoArray.hpp:26, from ./libmaus2/lz/BgzfInflateHeaderBase.hpp:28, from ./libmaus2/bambam/parallel/InputBlock.hpp:22, from ./libmaus2/bambam/parallel/ControlInputInfo.hpp:22, from test/testparallelbamvalidation.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::trie::LinearTrieStateBase}; _Tp = libmaus2::trie::LinearTrieStateBase; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/lz/BgzfInflateHeaderBase.hpp:28, from ./libmaus2/bambam/parallel/InputBlock.hpp:22, from ./libmaus2/bambam/parallel/ControlInputInfo.hpp:22, from test/testparallelbamvalidation.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1880:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __final_insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1880:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/map:60, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/lz/BgzfInflateHeaderBase.hpp:28, from ./libmaus2/bambam/parallel/InputBlock.hpp:22, from ./libmaus2/bambam/parallel/ControlInputInfo.hpp:22, from test/testparallelbamvalidation.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/map:61, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/lz/BgzfInflateHeaderBase.hpp:28, from ./libmaus2/bambam/parallel/InputBlock.hpp:22, from ./libmaus2/bambam/parallel/ControlInputInfo.hpp:22, from test/testparallelbamvalidation.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = bool; _Compare = std::less; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/parallel/PosixSpinLock.hpp:23, from ./libmaus2/aio/StreamLock.hpp:21, from ./libmaus2/autoarray/GenericAlignedAllocation.hpp:23, from ./libmaus2/autoarray/AutoArray.hpp:26, from ./libmaus2/lz/BgzfInflateHeaderBase.hpp:28, from ./libmaus2/bambam/parallel/InputBlock.hpp:22, from ./libmaus2/bambam/parallel/ControlInputInfo.hpp:22, from test/testparallelbamvalidation.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::parallel::DecompressedPendingObject&}; _Tp = libmaus2::bambam::parallel::DecompressedPendingObject; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector >::iterator’ {aka ‘__gnu_cxx::__normal_iterator > >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector >::iterator’ {aka ‘__gnu_cxx::__normal_iterator > >’} changed in GCC 7.1 In file included from /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/lz/BgzfInflateHeaderBase.hpp:28, from ./libmaus2/bambam/parallel/InputBlock.hpp:22, from ./libmaus2/bambam/parallel/ControlInputInfo.hpp:22, from test/testparallelbamvalidation.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::bambam::parallel::DecompressedPendingObject; _Compare = __gnu_cxx::__ops::_Iter_comp_val]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::bambam::parallel::DecompressedPendingObject; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/parallel/PosixSpinLock.hpp:23, from ./libmaus2/aio/StreamLock.hpp:21, from ./libmaus2/autoarray/GenericAlignedAllocation.hpp:23, from ./libmaus2/autoarray/AutoArray.hpp:26, from ./libmaus2/lz/BgzfInflateHeaderBase.hpp:28, from ./libmaus2/bambam/parallel/InputBlock.hpp:22, from ./libmaus2/bambam/parallel/ControlInputInfo.hpp:22, from test/testparallelbamvalidation.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In member function ‘virtual void libmaus2::bambam::parallel::ValidationControl::putDecompressedBlockAddPending(libmaus2::bambam::parallel::DecompressedBlock::shared_ptr_type)’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/lz/BgzfInflateHeaderBase.hpp:28, from ./libmaus2/bambam/parallel/InputBlock.hpp:22, from ./libmaus2/bambam/parallel/ControlInputInfo.hpp:22, from test/testparallelbamvalidation.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/lz/BgzfInflateHeaderBase.hpp:28, from ./libmaus2/bambam/parallel/InputBlock.hpp:22, from ./libmaus2/bambam/parallel/ControlInputInfo.hpp:22, from test/testparallelbamvalidation.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/parallel/PosixSpinLock.hpp:23, from ./libmaus2/aio/StreamLock.hpp:21, from ./libmaus2/autoarray/GenericAlignedAllocation.hpp:23, from ./libmaus2/autoarray/AutoArray.hpp:26, from ./libmaus2/lz/BgzfInflateHeaderBase.hpp:28, from ./libmaus2/bambam/parallel/InputBlock.hpp:22, from ./libmaus2/bambam/parallel/ControlInputInfo.hpp:22, from test/testparallelbamvalidation.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘typename libmaus2::trie::LinearHashTrie<_char_type, id_type>::unique_ptr_type libmaus2::trie::Trie<_char_type>::toLinearHashTrie() const [with id_type = unsigned int; _char_type = char]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/parallel/PosixSpinLock.hpp:23, from ./libmaus2/aio/StreamLock.hpp:21, from ./libmaus2/autoarray/GenericAlignedAllocation.hpp:23, from ./libmaus2/autoarray/AutoArray.hpp:26, from ./libmaus2/lz/BgzfInflateHeaderBase.hpp:28, from ./libmaus2/bambam/parallel/InputBlock.hpp:22, from ./libmaus2/bambam/parallel/ControlInputInfo.hpp:22, from test/testparallelbamvalidation.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/lz/BgzfInflateHeaderBase.hpp:28, from ./libmaus2/bambam/parallel/InputBlock.hpp:22, from ./libmaus2/bambam/parallel/ControlInputInfo.hpp:22, from test/testparallelbamvalidation.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1971:31: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__final_insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/parallel/PosixSpinLock.hpp:23, from ./libmaus2/aio/StreamLock.hpp:21, from ./libmaus2/autoarray/GenericAlignedAllocation.hpp:23, from ./libmaus2/autoarray/AutoArray.hpp:26, from ./libmaus2/lz/BgzfInflateHeaderBase.hpp:28, from ./libmaus2/bambam/parallel/InputBlock.hpp:22, from ./libmaus2/bambam/parallel/ControlInputInfo.hpp:22, from test/testparallelbamvalidation.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In member function ‘void libmaus2::bambam::BamHeaderLowMem::setupFromText()’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/lz/BgzfInflateHeaderBase.hpp:28, from ./libmaus2/bambam/parallel/InputBlock.hpp:22, from ./libmaus2/bambam/parallel/ControlInputInfo.hpp:22, from test/testparallelbamvalidation.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1971:31: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__final_insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ./libmaus2/bambam/BamHeaderLowMem.hpp:25, from ./libmaus2/bambam/parallel/ParseInfo.hpp:22, from test/testparallelbamvalidation.cpp:41: ./libmaus2/hashing/ConstantStringHash.hpp:71:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 unique_ptr_type u(new this_type(ita,ite,maxn)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ./libmaus2/bambam/parallel/ParseInfo.hpp:22, from test/testparallelbamvalidation.cpp:41: ./libmaus2/bambam/BamHeaderLowMem.hpp:802:4: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 } ^ /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testparallelbamvalidation test/testparallelbamvalidation-testparallelbamvalidation.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -ldl -lrt -L/usr/lib/arm-linux-gnueabi -lz libtool: link: arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testparallelbamvalidation test/testparallelbamvalidation-testparallelbamvalidation.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -ldl -lrt -L/usr/lib/arm-linux-gnueabi -lz -fopenmp -pthread arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testparallelbamrewrite-testparallelbamrewrite.o `test -f 'test/testparallelbamrewrite.cpp' || echo './'`test/testparallelbamrewrite.cpp In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/parallel/PushBackSpace.hpp:22, from ./libmaus2/bambam/parallel/AlignmentBuffer.hpp:22, from ./libmaus2/bambam/parallel/FragmentAlignmentBufferRewriteUpdateInterval.hpp:22, from test/testparallelbamrewrite.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/parallel/PushBackSpace.hpp:22, from ./libmaus2/bambam/parallel/AlignmentBuffer.hpp:22, from ./libmaus2/bambam/parallel/FragmentAlignmentBufferRewriteUpdateInterval.hpp:22, from test/testparallelbamrewrite.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = libmaus2::bambam::parallel::SmallLinearBlockCompressionPendingObject; _Compare = __gnu_cxx::__ops::_Iter_comp_val]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/map:60, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/parallel/PushBackSpace.hpp:22, from ./libmaus2/bambam/parallel/AlignmentBuffer.hpp:22, from ./libmaus2/bambam/parallel/FragmentAlignmentBufferRewriteUpdateInterval.hpp:22, from test/testparallelbamrewrite.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h: In member function ‘void std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_erase_aux(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator) [with _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:2489:5: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/parallel/PushBackSpace.hpp:22, from ./libmaus2/bambam/parallel/AlignmentBuffer.hpp:22, from ./libmaus2/bambam/parallel/FragmentAlignmentBufferRewriteUpdateInterval.hpp:22, from test/testparallelbamrewrite.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = libmaus2::bambam::parallel::WritePendingObject; _Compare = __gnu_cxx::__ops::_Iter_comp_val]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ In file included from ./libmaus2/bambam/BamHeader.hpp:35, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/parallel/PushBackSpace.hpp:22, from ./libmaus2/bambam/parallel/AlignmentBuffer.hpp:22, from ./libmaus2/bambam/parallel/FragmentAlignmentBufferRewriteUpdateInterval.hpp:22, from test/testparallelbamrewrite.cpp:20: ./libmaus2/hashing/ConstantStringHash.hpp: In constructor ‘libmaus2::hashing::ConstantStringHash::ConstantStringHash(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]’: ./libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 ConstantStringHash(iterator ita, iterator ite, uint64_t const maxn = 64*1024) ^~~~~~~~~~~~~~~~~~ ./libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/arm-linux-gnueabi/include/c++/8/map:60, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/parallel/PushBackSpace.hpp:22, from ./libmaus2/bambam/parallel/AlignmentBuffer.hpp:22, from ./libmaus2/bambam/parallel/FragmentAlignmentBufferRewriteUpdateInterval.hpp:22, from test/testparallelbamrewrite.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/map:61, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/parallel/PushBackSpace.hpp:22, from ./libmaus2/bambam/parallel/AlignmentBuffer.hpp:22, from ./libmaus2/bambam/parallel/FragmentAlignmentBufferRewriteUpdateInterval.hpp:22, from test/testparallelbamrewrite.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = long long unsigned int; _Compare = std::less; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h: In member function ‘virtual void libmaus2::parallel::SimpleThreadPool::setTaskId(uint64_t, uint64_t)’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/parallel/PushBackSpace.hpp:22, from ./libmaus2/bambam/parallel/AlignmentBuffer.hpp:22, from ./libmaus2/bambam/parallel/FragmentAlignmentBufferRewriteUpdateInterval.hpp:22, from test/testparallelbamrewrite.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::trie::LinearTrieStateBase}; _Tp = libmaus2::trie::LinearTrieStateBase; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/parallel/PushBackSpace.hpp:22, from ./libmaus2/bambam/parallel/AlignmentBuffer.hpp:22, from ./libmaus2/bambam/parallel/FragmentAlignmentBufferRewriteUpdateInterval.hpp:22, from test/testparallelbamrewrite.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1880:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __final_insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1880:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/parallel/PushBackSpace.hpp:22, from ./libmaus2/bambam/parallel/AlignmentBuffer.hpp:22, from ./libmaus2/bambam/parallel/FragmentAlignmentBufferRewriteUpdateInterval.hpp:22, from test/testparallelbamrewrite.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::parallel::SmallLinearBlockCompressionPendingObject}; _Tp = libmaus2::bambam::parallel::SmallLinearBlockCompressionPendingObject; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {libmaus2::bambam::parallel::SmallLinearBlockCompressionPendingObject}; _Tp = libmaus2::bambam::parallel::SmallLinearBlockCompressionPendingObject; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/map:60, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/parallel/PushBackSpace.hpp:22, from ./libmaus2/bambam/parallel/AlignmentBuffer.hpp:22, from ./libmaus2/bambam/parallel/FragmentAlignmentBufferRewriteUpdateInterval.hpp:22, from test/testparallelbamrewrite.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/map:61, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/parallel/PushBackSpace.hpp:22, from ./libmaus2/bambam/parallel/AlignmentBuffer.hpp:22, from ./libmaus2/bambam/parallel/FragmentAlignmentBufferRewriteUpdateInterval.hpp:22, from test/testparallelbamrewrite.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = bool; _Compare = std::less; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/parallel/PushBackSpace.hpp:22, from ./libmaus2/bambam/parallel/AlignmentBuffer.hpp:22, from ./libmaus2/bambam/parallel/FragmentAlignmentBufferRewriteUpdateInterval.hpp:22, from test/testparallelbamrewrite.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::parallel::DecompressedPendingObject&}; _Tp = libmaus2::bambam::parallel::DecompressedPendingObject; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector >::iterator’ {aka ‘__gnu_cxx::__normal_iterator > >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector >::iterator’ {aka ‘__gnu_cxx::__normal_iterator > >’} changed in GCC 7.1 In file included from /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/parallel/PushBackSpace.hpp:22, from ./libmaus2/bambam/parallel/AlignmentBuffer.hpp:22, from ./libmaus2/bambam/parallel/FragmentAlignmentBufferRewriteUpdateInterval.hpp:22, from test/testparallelbamrewrite.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::bambam::parallel::DecompressedPendingObject; _Compare = __gnu_cxx::__ops::_Iter_comp_val]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = libmaus2::bambam::parallel::WritePendingObject; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/parallel/PushBackSpace.hpp:22, from ./libmaus2/bambam/parallel/AlignmentBuffer.hpp:22, from ./libmaus2/bambam/parallel/FragmentAlignmentBufferRewriteUpdateInterval.hpp:22, from test/testparallelbamrewrite.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::parallel::WritePendingObject}; _Tp = libmaus2::bambam::parallel::WritePendingObject; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘virtual void libmaus2::bambam::parallel::RewriteControl::addWritePendingBgzfBlock(int64_t, int64_t, libmaus2::lz::BgzfDeflateOutputBufferBase::shared_ptr_type, const libmaus2::lz::BgzfDeflateZStreamBaseFlushInfo&)’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/parallel/PushBackSpace.hpp:22, from ./libmaus2/bambam/parallel/AlignmentBuffer.hpp:22, from ./libmaus2/bambam/parallel/FragmentAlignmentBufferRewriteUpdateInterval.hpp:22, from test/testparallelbamrewrite.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = libmaus2::bambam::parallel::SmallLinearBlockCompressionPendingObject; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/map:60, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/parallel/PushBackSpace.hpp:22, from ./libmaus2/bambam/parallel/AlignmentBuffer.hpp:22, from ./libmaus2/bambam/parallel/FragmentAlignmentBufferRewriteUpdateInterval.hpp:22, from test/testparallelbamrewrite.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/map:61, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/parallel/PushBackSpace.hpp:22, from ./libmaus2/bambam/parallel/AlignmentBuffer.hpp:22, from ./libmaus2/bambam/parallel/FragmentAlignmentBufferRewriteUpdateInterval.hpp:22, from test/testparallelbamrewrite.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h: In member function ‘void libmaus2::bambam::parallel::RewriteControl::checkLargeBlockCompressionPending()’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h: In member function ‘void libmaus2::bambam::parallel::RewriteControl::checkValidatedRewritePending()’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabi/include/c++/8/map:60, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/parallel/PushBackSpace.hpp:22, from ./libmaus2/bambam/parallel/AlignmentBuffer.hpp:22, from ./libmaus2/bambam/parallel/FragmentAlignmentBufferRewriteUpdateInterval.hpp:22, from test/testparallelbamrewrite.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h: In member function ‘virtual void libmaus2::bambam::parallel::RewriteControl::smallLinearBlockCompressionPendingObjectFinished(const libmaus2::bambam::parallel::SmallLinearBlockCompressionPendingObject&)’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/parallel/PushBackSpace.hpp:22, from ./libmaus2/bambam/parallel/AlignmentBuffer.hpp:22, from ./libmaus2/bambam/parallel/FragmentAlignmentBufferRewriteUpdateInterval.hpp:22, from test/testparallelbamrewrite.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::bambam::parallel::DecompressedPendingObject; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/map:60, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/parallel/PushBackSpace.hpp:22, from ./libmaus2/bambam/parallel/AlignmentBuffer.hpp:22, from ./libmaus2/bambam/parallel/FragmentAlignmentBufferRewriteUpdateInterval.hpp:22, from test/testparallelbamrewrite.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h: In member function ‘virtual void libmaus2::bambam::parallel::RewriteControl::fragmentAlignmentBufferRewriteFragmentComplete(libmaus2::bambam::parallel::AlignmentBuffer::shared_ptr_type&, libmaus2::bambam::parallel::FragmentAlignmentBuffer::shared_ptr_type&, uint64_t)’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/parallel/PushBackSpace.hpp:22, from ./libmaus2/bambam/parallel/AlignmentBuffer.hpp:22, from ./libmaus2/bambam/parallel/FragmentAlignmentBufferRewriteUpdateInterval.hpp:22, from test/testparallelbamrewrite.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In member function ‘virtual void libmaus2::bambam::parallel::RewriteControl::putDecompressedBlockAddPending(libmaus2::bambam::parallel::DecompressedBlock::shared_ptr_type)’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/parallel/PushBackSpace.hpp:22, from ./libmaus2/bambam/parallel/AlignmentBuffer.hpp:22, from ./libmaus2/bambam/parallel/FragmentAlignmentBufferRewriteUpdateInterval.hpp:22, from test/testparallelbamrewrite.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/parallel/PushBackSpace.hpp:22, from ./libmaus2/bambam/parallel/AlignmentBuffer.hpp:22, from ./libmaus2/bambam/parallel/FragmentAlignmentBufferRewriteUpdateInterval.hpp:22, from test/testparallelbamrewrite.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/parallel/PushBackSpace.hpp:22, from ./libmaus2/bambam/parallel/AlignmentBuffer.hpp:22, from ./libmaus2/bambam/parallel/FragmentAlignmentBufferRewriteUpdateInterval.hpp:22, from test/testparallelbamrewrite.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘typename libmaus2::trie::LinearHashTrie<_char_type, id_type>::unique_ptr_type libmaus2::trie::Trie<_char_type>::toLinearHashTrie() const [with id_type = unsigned int; _char_type = char]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/parallel/PushBackSpace.hpp:22, from ./libmaus2/bambam/parallel/AlignmentBuffer.hpp:22, from ./libmaus2/bambam/parallel/FragmentAlignmentBufferRewriteUpdateInterval.hpp:22, from test/testparallelbamrewrite.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/parallel/PushBackSpace.hpp:22, from ./libmaus2/bambam/parallel/AlignmentBuffer.hpp:22, from ./libmaus2/bambam/parallel/FragmentAlignmentBufferRewriteUpdateInterval.hpp:22, from test/testparallelbamrewrite.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1971:31: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__final_insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/parallel/PushBackSpace.hpp:22, from ./libmaus2/bambam/parallel/AlignmentBuffer.hpp:22, from ./libmaus2/bambam/parallel/FragmentAlignmentBufferRewriteUpdateInterval.hpp:22, from test/testparallelbamrewrite.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In member function ‘void libmaus2::bambam::BamHeaderLowMem::setupFromText()’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/parallel/PushBackSpace.hpp:22, from ./libmaus2/bambam/parallel/AlignmentBuffer.hpp:22, from ./libmaus2/bambam/parallel/FragmentAlignmentBufferRewriteUpdateInterval.hpp:22, from test/testparallelbamrewrite.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1971:31: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__final_insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ./libmaus2/bambam/BamHeader.hpp:35, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/parallel/PushBackSpace.hpp:22, from ./libmaus2/bambam/parallel/AlignmentBuffer.hpp:22, from ./libmaus2/bambam/parallel/FragmentAlignmentBufferRewriteUpdateInterval.hpp:22, from test/testparallelbamrewrite.cpp:20: ./libmaus2/hashing/ConstantStringHash.hpp:71:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 unique_ptr_type u(new this_type(ita,ite,maxn)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ./libmaus2/bambam/parallel/ParseInfo.hpp:22, from test/testparallelbamrewrite.cpp:55: ./libmaus2/bambam/BamHeaderLowMem.hpp:802:4: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 } ^ /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testparallelbamrewrite test/testparallelbamrewrite-testparallelbamrewrite.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/arm-linux-gnueabi -lz libtool: link: arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testparallelbamrewrite test/testparallelbamrewrite-testparallelbamrewrite.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/arm-linux-gnueabi -lz -fopenmp -pthread arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testbammateerase-testbammateerase.o `test -f 'test/testbammateerase.cpp' || echo './'`test/testbammateerase.cpp In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from test/testbammateerase.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::ReadGroup&}; _Tp = libmaus2::bambam::ReadGroup; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 In file included from ./libmaus2/bambam/BamHeader.hpp:35, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from test/testbammateerase.cpp:20: ./libmaus2/hashing/ConstantStringHash.hpp: In constructor ‘libmaus2::hashing::ConstantStringHash::ConstantStringHash(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]’: ./libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 ConstantStringHash(iterator ita, iterator ite, uint64_t const maxn = 64*1024) ^~~~~~~~~~~~~~~~~~ ./libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from test/testbammateerase.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::trie::LinearTrieStateBase}; _Tp = libmaus2::trie::LinearTrieStateBase; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from test/testbammateerase.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from test/testbammateerase.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In static member function ‘static std::vector libmaus2::bambam::BamHeader::getReadGroups(const string&)’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from test/testbammateerase.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from test/testbammateerase.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from test/testbammateerase.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘typename libmaus2::trie::LinearHashTrie<_char_type, id_type>::unique_ptr_type libmaus2::trie::Trie<_char_type>::toLinearHashTrie() const [with id_type = unsigned int; _char_type = char]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from test/testbammateerase.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from test/testbammateerase.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ./libmaus2/bambam/BamHeader.hpp:35, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from test/testbammateerase.cpp:20: ./libmaus2/hashing/ConstantStringHash.hpp: In member function ‘void libmaus2::bambam::BamHeader::initSetup()’: ./libmaus2/hashing/ConstantStringHash.hpp:86:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 shared_ptr_type s(new this_type(ita,ite,maxn)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from test/testbammateerase.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void libmaus2::bambam::BamHeader::init(stream_type&) [with stream_type = libmaus2::lz::BgzfInflateStream]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testbammateerase test/testbammateerase-testbammateerase.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/arm-linux-gnueabi -lz libtool: link: arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testbammateerase test/testbammateerase-testbammateerase.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/arm-linux-gnueabi -lz -fopenmp -pthread arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testparallelbamblocksort-testparallelbamblocksort.o `test -f 'test/testparallelbamblocksort.cpp' || echo './'`test/testparallelbamblocksort.cpp In file included from test/testparallelbamblocksort.cpp:19: ./libmaus2/bambam/parallel/BlockMergeControl.hpp: In member function ‘void libmaus2::bambam::parallel::BlockMergeControl<_heap_element_type>::samCheckWritePendingQueue()’: ./libmaus2/bambam/parallel/BlockMergeControl.hpp:1122:49: warning: left shift count >= width of type [-Wshift-count-overflow] package->subid = ((block->blockid + 1) << 32) | block->subblockid; ^~ ./libmaus2/bambam/parallel/BlockMergeControl.hpp:1127:50: warning: left shift count >= width of type [-Wshift-count-overflow] cpackage->subid = ((block->blockid + 1) << 32) | block->subblockid; ^~ ./libmaus2/bambam/parallel/BlockMergeControl.hpp: In instantiation of ‘void libmaus2::bambam::parallel::BlockMergeControl<_heap_element_type>::samCheckWritePendingQueue() [with _heap_element_type = libmaus2::bambam::parallel::GenericInputControlMergeHeapEntryQueryName]’: ./libmaus2/bambam/parallel/BlockMergeControl.hpp:1193:6: required from ‘void libmaus2::bambam::parallel::BlockMergeControl<_heap_element_type>::sam_data_write_function(ssize_t, size_t, const char*, size_t, cram_data_write_block_type) [with _heap_element_type = libmaus2::bambam::parallel::GenericInputControlMergeHeapEntryQueryName; ssize_t = int; size_t = unsigned int; cram_data_write_block_type = _cram_data_write_block_type]’ ./libmaus2/bambam/parallel/BlockMergeControl.hpp:1249:6: required from ‘static void libmaus2::bambam::parallel::BlockMergeControl<_heap_element_type>::sam_data_write_function(void*, ssize_t, size_t, const char*, size_t, cram_data_write_block_type) [with _heap_element_type = libmaus2::bambam::parallel::GenericInputControlMergeHeapEntryQueryName; ssize_t = int; size_t = unsigned int; cram_data_write_block_type = _cram_data_write_block_type]’ ./libmaus2/bambam/parallel/BlockMergeControl.hpp:339:49: required from ‘void libmaus2::bambam::parallel::BlockMergeControl<_heap_element_type>::enqueHeader() [with _heap_element_type = libmaus2::bambam::parallel::GenericInputControlMergeHeapEntryQueryName]’ ./libmaus2/bambam/parallel/BlockMergeControl.hpp:556:6: required from ‘libmaus2::bambam::parallel::BlockMergeControl<_heap_element_type>::BlockMergeControl(libmaus2::parallel::SimpleThreadPool&, std::ostream&, libmaus2::autoarray::AutoArray&, const std::vector&, libmaus2::bitio::BitVector*, int, uint64_t, uint64_t, uint64_t, uint64_t, uint64_t, const string&, const string&, libmaus2::digest::DigestInterface*, libmaus2::bambam::parallel::BlockMergeControlTypeBase::block_merge_output_format_t, bool, bool) [with _heap_element_type = libmaus2::bambam::parallel::GenericInputControlMergeHeapEntryQueryName; std::ostream = std::basic_ostream; libmaus2::bitio::BitVector = libmaus2::bitio::BitVectorTemplate; uint64_t = long long unsigned int; std::__cxx11::string = std::__cxx11::basic_string]’ test/testparallelbamblocksort.cpp:221:68: required from ‘int parallelbamblocksort(const libmaus2::util::ArgInfo&, bool, bool, const string&, bool) [with order_type = libmaus2::bambam::parallel::FragmentAlignmentBufferQueryNameComparator; heap_element_type = libmaus2::bambam::parallel::GenericInputControlMergeHeapEntryQueryName; bool create_dup_mark_info = false; std::__cxx11::string = std::__cxx11::basic_string]’ test/testparallelbamblocksort.cpp:267:4: required from here ./libmaus2/bambam/parallel/BlockMergeControl.hpp:1122:46: warning: left shift count >= width of type [-Wshift-count-overflow] package->subid = ((block->blockid + 1) << 32) | block->subblockid; ~~~~~~~~~~~~~~~~~~~~~~^~~~~~ ./libmaus2/bambam/parallel/BlockMergeControl.hpp:1127:47: warning: left shift count >= width of type [-Wshift-count-overflow] cpackage->subid = ((block->blockid + 1) << 32) | block->subblockid; ~~~~~~~~~~~~~~~~~~~~~~^~~~~~ ./libmaus2/bambam/parallel/BlockMergeControl.hpp: In instantiation of ‘void libmaus2::bambam::parallel::BlockMergeControl<_heap_element_type>::samCheckWritePendingQueue() [with _heap_element_type = libmaus2::bambam::parallel::GenericInputControlMergeHeapEntryCoordinate]’: ./libmaus2/bambam/parallel/BlockMergeControl.hpp:1193:6: required from ‘void libmaus2::bambam::parallel::BlockMergeControl<_heap_element_type>::sam_data_write_function(ssize_t, size_t, const char*, size_t, cram_data_write_block_type) [with _heap_element_type = libmaus2::bambam::parallel::GenericInputControlMergeHeapEntryCoordinate; ssize_t = int; size_t = unsigned int; cram_data_write_block_type = _cram_data_write_block_type]’ ./libmaus2/bambam/parallel/BlockMergeControl.hpp:1249:6: required from ‘static void libmaus2::bambam::parallel::BlockMergeControl<_heap_element_type>::sam_data_write_function(void*, ssize_t, size_t, const char*, size_t, cram_data_write_block_type) [with _heap_element_type = libmaus2::bambam::parallel::GenericInputControlMergeHeapEntryCoordinate; ssize_t = int; size_t = unsigned int; cram_data_write_block_type = _cram_data_write_block_type]’ ./libmaus2/bambam/parallel/BlockMergeControl.hpp:339:49: required from ‘void libmaus2::bambam::parallel::BlockMergeControl<_heap_element_type>::enqueHeader() [with _heap_element_type = libmaus2::bambam::parallel::GenericInputControlMergeHeapEntryCoordinate]’ ./libmaus2/bambam/parallel/BlockMergeControl.hpp:556:6: required from ‘libmaus2::bambam::parallel::BlockMergeControl<_heap_element_type>::BlockMergeControl(libmaus2::parallel::SimpleThreadPool&, std::ostream&, libmaus2::autoarray::AutoArray&, const std::vector&, libmaus2::bitio::BitVector*, int, uint64_t, uint64_t, uint64_t, uint64_t, uint64_t, const string&, const string&, libmaus2::digest::DigestInterface*, libmaus2::bambam::parallel::BlockMergeControlTypeBase::block_merge_output_format_t, bool, bool) [with _heap_element_type = libmaus2::bambam::parallel::GenericInputControlMergeHeapEntryCoordinate; std::ostream = std::basic_ostream; libmaus2::bitio::BitVector = libmaus2::bitio::BitVectorTemplate; uint64_t = long long unsigned int; std::__cxx11::string = std::__cxx11::basic_string]’ test/testparallelbamblocksort.cpp:221:68: required from ‘int parallelbamblocksort(const libmaus2::util::ArgInfo&, bool, bool, const string&, bool) [with order_type = libmaus2::bambam::parallel::FragmentAlignmentBufferPosComparator; heap_element_type = libmaus2::bambam::parallel::GenericInputControlMergeHeapEntryCoordinate; bool create_dup_mark_info = true; std::__cxx11::string = std::__cxx11::basic_string]’ test/testparallelbamblocksort.cpp:277:4: required from here ./libmaus2/bambam/parallel/BlockMergeControl.hpp:1122:46: warning: left shift count >= width of type [-Wshift-count-overflow] package->subid = ((block->blockid + 1) << 32) | block->subblockid; ~~~~~~~~~~~~~~~~~~~~~~^~~~~~ ./libmaus2/bambam/parallel/BlockMergeControl.hpp:1127:47: warning: left shift count >= width of type [-Wshift-count-overflow] cpackage->subid = ((block->blockid + 1) << 32) | block->subblockid; ~~~~~~~~~~~~~~~~~~~~~~^~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/ChecksumsInterface.hpp:22, from ./libmaus2/bambam/ChecksumsFactory.hpp:22, from ./libmaus2/bambam/ChecksumsInterfaceAllocator.hpp:22, from ./libmaus2/bambam/parallel/BlockMergeControl.hpp:27, from test/testparallelbamblocksort.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::ReadGroup&}; _Tp = libmaus2::bambam::ReadGroup; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/ChecksumsInterface.hpp:22, from ./libmaus2/bambam/ChecksumsFactory.hpp:22, from ./libmaus2/bambam/ChecksumsInterfaceAllocator.hpp:22, from ./libmaus2/bambam/parallel/BlockMergeControl.hpp:27, from test/testparallelbamblocksort.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/ChecksumsInterface.hpp:22, from ./libmaus2/bambam/ChecksumsFactory.hpp:22, from ./libmaus2/bambam/ChecksumsInterfaceAllocator.hpp:22, from ./libmaus2/bambam/parallel/BlockMergeControl.hpp:27, from test/testparallelbamblocksort.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::math::IntegerInterval&}; _Tp = libmaus2::math::IntegerInterval; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::parallel::FragmentAlignmentBuffer::FragmentAlignmentBufferCopyRequest&}; _Tp = libmaus2::bambam::parallel::FragmentAlignmentBuffer::FragmentAlignmentBufferCopyRequest; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/ChecksumsInterface.hpp:22, from ./libmaus2/bambam/ChecksumsFactory.hpp:22, from ./libmaus2/bambam/ChecksumsInterfaceAllocator.hpp:22, from ./libmaus2/bambam/parallel/BlockMergeControl.hpp:27, from test/testparallelbamblocksort.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In member function ‘std::vector libmaus2::bambam::parallel::FragmentAlignmentBuffer::setupCopy(libmaus2::bambam::parallel::FragmentAlignmentBuffer&)’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/ChecksumsInterface.hpp:22, from ./libmaus2/bambam/ChecksumsFactory.hpp:22, from ./libmaus2/bambam/ChecksumsInterfaceAllocator.hpp:22, from ./libmaus2/bambam/parallel/BlockMergeControl.hpp:27, from test/testparallelbamblocksort.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::ReadEnds&}; _Tp = libmaus2::bambam::ReadEnds; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector > >’} changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from ./libmaus2/bambam/BamHeader.hpp:35, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/ChecksumsInterface.hpp:22, from ./libmaus2/bambam/ChecksumsFactory.hpp:22, from ./libmaus2/bambam/ChecksumsInterfaceAllocator.hpp:22, from ./libmaus2/bambam/parallel/BlockMergeControl.hpp:27, from test/testparallelbamblocksort.cpp:19: ./libmaus2/hashing/ConstantStringHash.hpp: In constructor ‘libmaus2::hashing::ConstantStringHash::ConstantStringHash(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]’: ./libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 ConstantStringHash(iterator ita, iterator ite, uint64_t const maxn = 64*1024) ^~~~~~~~~~~~~~~~~~ ./libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 ./libmaus2/hashing/ConstantStringHash.hpp: In constructor ‘libmaus2::hashing::ConstantStringHash::ConstantStringHash(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]’: ./libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 ./libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 ./libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/arm-linux-gnueabi/include/c++/8/map:60, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/ChecksumsInterface.hpp:22, from ./libmaus2/bambam/ChecksumsFactory.hpp:22, from ./libmaus2/bambam/ChecksumsInterfaceAllocator.hpp:22, from ./libmaus2/bambam/parallel/BlockMergeControl.hpp:27, from test/testparallelbamblocksort.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h: In member function ‘void std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_erase_aux(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator) [with _Key = long long unsigned int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:2489:5: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/ChecksumsInterface.hpp:22, from ./libmaus2/bambam/ChecksumsFactory.hpp:22, from ./libmaus2/bambam/ChecksumsInterfaceAllocator.hpp:22, from ./libmaus2/bambam/parallel/BlockMergeControl.hpp:27, from test/testparallelbamblocksort.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In member function ‘uint64_t libmaus2::index::ExternalMemoryIndexGenerator<_data_type, _base_level_log, _inner_level_log>::flush() [with _data_type = libmaus2::bambam::ReadEndsBase; unsigned int _base_level_log = 9; unsigned int _inner_level_log = 2]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/map:60, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/ChecksumsInterface.hpp:22, from ./libmaus2/bambam/ChecksumsFactory.hpp:22, from ./libmaus2/bambam/ChecksumsInterfaceAllocator.hpp:22, from ./libmaus2/bambam/parallel/BlockMergeControl.hpp:27, from test/testparallelbamblocksort.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/map:61, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/ChecksumsInterface.hpp:22, from ./libmaus2/bambam/ChecksumsFactory.hpp:22, from ./libmaus2/bambam/ChecksumsInterfaceAllocator.hpp:22, from ./libmaus2/bambam/parallel/BlockMergeControl.hpp:27, from test/testparallelbamblocksort.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = long long unsigned int; _Compare = std::less; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/ChecksumsInterface.hpp:22, from ./libmaus2/bambam/ChecksumsFactory.hpp:22, from ./libmaus2/bambam/ChecksumsInterfaceAllocator.hpp:22, from ./libmaus2/bambam/parallel/BlockMergeControl.hpp:27, from test/testparallelbamblocksort.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::trie::LinearTrieStateBase}; _Tp = libmaus2::trie::LinearTrieStateBase; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/ChecksumsInterface.hpp:22, from ./libmaus2/bambam/ChecksumsFactory.hpp:22, from ./libmaus2/bambam/ChecksumsInterfaceAllocator.hpp:22, from ./libmaus2/bambam/parallel/BlockMergeControl.hpp:27, from test/testparallelbamblocksort.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1880:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __final_insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1880:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/ChecksumsInterface.hpp:22, from ./libmaus2/bambam/ChecksumsFactory.hpp:22, from ./libmaus2/bambam/ChecksumsInterfaceAllocator.hpp:22, from ./libmaus2/bambam/parallel/BlockMergeControl.hpp:27, from test/testparallelbamblocksort.cpp:19: ./libmaus2/autoarray/AutoArray.hpp: In constructor ‘libmaus2::autoarray::AutoArray::AutoArray(uint64_t, bool) [with N = libmaus2::bambam::BamIndexBinChunk; libmaus2::autoarray::alloc_type atype = (libmaus2::autoarray::alloc_type)0; erase_type = libmaus2::autoarray::ArrayErase]’: ./libmaus2/autoarray/AutoArray.hpp:1801:5: warning: ‘’ may be used uninitialized in this function [-Wmaybe-uninitialized] array[i] = N(); ^~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/ChecksumsInterface.hpp:22, from ./libmaus2/bambam/ChecksumsFactory.hpp:22, from ./libmaus2/bambam/ChecksumsInterfaceAllocator.hpp:22, from ./libmaus2/bambam/parallel/BlockMergeControl.hpp:27, from test/testparallelbamblocksort.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector > >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/ChecksumsInterface.hpp:22, from ./libmaus2/bambam/ChecksumsFactory.hpp:22, from ./libmaus2/bambam/ChecksumsInterfaceAllocator.hpp:22, from ./libmaus2/bambam/parallel/BlockMergeControl.hpp:27, from test/testparallelbamblocksort.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_val]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/ChecksumsInterface.hpp:22, from ./libmaus2/bambam/ChecksumsFactory.hpp:22, from ./libmaus2/bambam/ChecksumsInterfaceAllocator.hpp:22, from ./libmaus2/bambam/parallel/BlockMergeControl.hpp:27, from test/testparallelbamblocksort.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::priority_queue<_Tp, _Sequence, _Compare>::push(std::priority_queue<_Tp, _Sequence, _Compare>::value_type&&) [with _Tp = std::pair; _Sequence = std::vector >; _Compare = libmaus2::bambam::ReadEndsHeapPairComparator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/ChecksumsInterface.hpp:22, from ./libmaus2/bambam/ChecksumsFactory.hpp:22, from ./libmaus2/bambam/ChecksumsInterfaceAllocator.hpp:22, from ./libmaus2/bambam/parallel/BlockMergeControl.hpp:27, from test/testparallelbamblocksort.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/ChecksumsInterface.hpp:22, from ./libmaus2/bambam/ChecksumsFactory.hpp:22, from ./libmaus2/bambam/ChecksumsInterfaceAllocator.hpp:22, from ./libmaus2/bambam/parallel/BlockMergeControl.hpp:27, from test/testparallelbamblocksort.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In member function ‘std::pair libmaus2::bambam::ReadEndsBlockIndexSet::merge(std::vector >, bool (*)(const libmaus2::bambam::ReadEndsBase&, const libmaus2::bambam::ReadEndsBase&), uint64_t (*)(const std::vector&, libmaus2::bambam::DupSetCallback&), libmaus2::bambam::DupSetCallback&)’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/ChecksumsInterface.hpp:22, from ./libmaus2/bambam/ChecksumsFactory.hpp:22, from ./libmaus2/bambam/ChecksumsInterfaceAllocator.hpp:22, from ./libmaus2/bambam/parallel/BlockMergeControl.hpp:27, from test/testparallelbamblocksort.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/ChecksumsInterface.hpp:22, from ./libmaus2/bambam/ChecksumsFactory.hpp:22, from ./libmaus2/bambam/ChecksumsInterfaceAllocator.hpp:22, from ./libmaus2/bambam/parallel/BlockMergeControl.hpp:27, from test/testparallelbamblocksort.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In member function ‘std::pair libmaus2::bambam::ReadEndsBlockIndexSet::mergePairs(std::vector >, bool (*)(const libmaus2::bambam::ReadEndsBase&, const libmaus2::bambam::ReadEndsBase&), uint64_t (*)(std::vector&, libmaus2::bambam::DupSetCallback&, unsigned int), libmaus2::bambam::DupSetCallback&, unsigned int)’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/ChecksumsInterface.hpp:22, from ./libmaus2/bambam/ChecksumsFactory.hpp:22, from ./libmaus2/bambam/ChecksumsInterfaceAllocator.hpp:22, from ./libmaus2/bambam/parallel/BlockMergeControl.hpp:27, from test/testparallelbamblocksort.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/ChecksumsInterface.hpp:22, from ./libmaus2/bambam/ChecksumsFactory.hpp:22, from ./libmaus2/bambam/ChecksumsInterfaceAllocator.hpp:22, from ./libmaus2/bambam/parallel/BlockMergeControl.hpp:27, from test/testparallelbamblocksort.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In static member function ‘static std::vector libmaus2::bambam::BamHeader::getReadGroups(const string&)’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/ChecksumsInterface.hpp:22, from ./libmaus2/bambam/ChecksumsFactory.hpp:22, from ./libmaus2/bambam/ChecksumsInterfaceAllocator.hpp:22, from ./libmaus2/bambam/parallel/BlockMergeControl.hpp:27, from test/testparallelbamblocksort.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::parallel::RefIdInterval}; _Tp = libmaus2::bambam::parallel::RefIdInterval; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {libmaus2::bambam::parallel::RefIdInterval}; _Tp = libmaus2::bambam::parallel::RefIdInterval; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::parallel::GenericInputControlStreamInfo}; _Tp = libmaus2::bambam::parallel::GenericInputControlStreamInfo; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {libmaus2::bambam::parallel::GenericInputControlStreamInfo}; _Tp = libmaus2::bambam::parallel::GenericInputControlStreamInfo; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/ChecksumsInterface.hpp:22, from ./libmaus2/bambam/ChecksumsFactory.hpp:22, from ./libmaus2/bambam/ChecksumsInterfaceAllocator.hpp:22, from ./libmaus2/bambam/parallel/BlockMergeControl.hpp:27, from test/testparallelbamblocksort.cpp:19: ./libmaus2/autoarray/AutoArray.hpp: In constructor ‘libmaus2::autoarray::AutoArray::AutoArray(uint64_t, bool) [with N = libmaus2::bambam::parallel::GenericInputControlMergeHeapEntryCoordinate; libmaus2::autoarray::alloc_type atype = (libmaus2::autoarray::alloc_type)0; erase_type = libmaus2::autoarray::ArrayErase]’: ./libmaus2/autoarray/AutoArray.hpp:1801:5: warning: ‘’ may be used uninitialized in this function [-Wmaybe-uninitialized] array[i] = N(); ^~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/ChecksumsInterface.hpp:22, from ./libmaus2/bambam/ChecksumsFactory.hpp:22, from ./libmaus2/bambam/ChecksumsInterfaceAllocator.hpp:22, from ./libmaus2/bambam/parallel/BlockMergeControl.hpp:27, from test/testparallelbamblocksort.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In constructor ‘libmaus2::bambam::ProgramHeaderLineSet::ProgramHeaderLineSet(const string&)’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/ChecksumsInterface.hpp:22, from ./libmaus2/bambam/ChecksumsFactory.hpp:22, from ./libmaus2/bambam/ChecksumsInterfaceAllocator.hpp:22, from ./libmaus2/bambam/parallel/BlockMergeControl.hpp:27, from test/testparallelbamblocksort.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/ChecksumsInterface.hpp:22, from ./libmaus2/bambam/ChecksumsFactory.hpp:22, from ./libmaus2/bambam/ChecksumsInterfaceAllocator.hpp:22, from ./libmaus2/bambam/parallel/BlockMergeControl.hpp:27, from test/testparallelbamblocksort.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/ChecksumsInterface.hpp:22, from ./libmaus2/bambam/ChecksumsFactory.hpp:22, from ./libmaus2/bambam/ChecksumsInterfaceAllocator.hpp:22, from ./libmaus2/bambam/parallel/BlockMergeControl.hpp:27, from test/testparallelbamblocksort.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘typename libmaus2::trie::LinearHashTrie<_char_type, id_type>::unique_ptr_type libmaus2::trie::Trie<_char_type>::toLinearHashTrie() const [with id_type = unsigned int; _char_type = char]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/ChecksumsInterface.hpp:22, from ./libmaus2/bambam/ChecksumsFactory.hpp:22, from ./libmaus2/bambam/ChecksumsInterfaceAllocator.hpp:22, from ./libmaus2/bambam/parallel/BlockMergeControl.hpp:27, from test/testparallelbamblocksort.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/ChecksumsInterface.hpp:22, from ./libmaus2/bambam/ChecksumsFactory.hpp:22, from ./libmaus2/bambam/ChecksumsInterfaceAllocator.hpp:22, from ./libmaus2/bambam/parallel/BlockMergeControl.hpp:27, from test/testparallelbamblocksort.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1971:31: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__final_insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Val_comp_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/ChecksumsInterface.hpp:22, from ./libmaus2/bambam/ChecksumsFactory.hpp:22, from ./libmaus2/bambam/ChecksumsInterfaceAllocator.hpp:22, from ./libmaus2/bambam/parallel/BlockMergeControl.hpp:27, from test/testparallelbamblocksort.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_val > >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = libmaus2::bambam::ReadEnds; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__make_heap(_RandomAccessIterator, _RandomAccessIterator, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:326:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __make_heap(_RandomAccessIterator __first, _RandomAccessIterator __last, ^~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:326:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__pop_heap(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:243:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __pop_heap(_RandomAccessIterator __first, _RandomAccessIterator __last, ^~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:243:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:243:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/ChecksumsInterface.hpp:22, from ./libmaus2/bambam/ChecksumsFactory.hpp:22, from ./libmaus2/bambam/ChecksumsInterfaceAllocator.hpp:22, from ./libmaus2/bambam/parallel/BlockMergeControl.hpp:27, from test/testparallelbamblocksort.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1672:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__make_heap(__first, __middle, __comp); ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ./libmaus2/bambam/ReadEndsBlockIndexSet.hpp:22, from ./libmaus2/bambam/parallel/FragReadEndsMergeWorkPackageDispatcher.hpp:26, from ./libmaus2/bambam/parallel/BlockSortControl.hpp:42, from test/testparallelbamblocksort.cpp:20: ./libmaus2/bambam/DupMarkBase.hpp: In static member function ‘static uint64_t libmaus2::bambam::DupMarkBase::markDuplicatePairsOpt(iterator, iterator, libmaus2::bambam::DupSetCallback&, unsigned int, libmaus2::bambam::DupMarkBase::MarkOptical*) [with iterator = __gnu_cxx::__normal_iterator >; projector = libmaus2::bambam::DupMarkBase::MarkDuplicateProjectorIdentity; bool bmarkopt = false]’: ./libmaus2/bambam/DupMarkBase.hpp:79:20: note: parameter passing for argument of type ‘const __gnu_cxx::__normal_iterator >’ changed in GCC 7.1 static uint64_t markDuplicatePairsOpt( ^~~~~~~~~~~~~~~~~~~~~ ./libmaus2/bambam/DupMarkBase.hpp:79:20: note: parameter passing for argument of type ‘const __gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/ChecksumsInterface.hpp:22, from ./libmaus2/bambam/ChecksumsFactory.hpp:22, from ./libmaus2/bambam/ChecksumsInterfaceAllocator.hpp:22, from ./libmaus2/bambam/parallel/BlockMergeControl.hpp:27, from test/testparallelbamblocksort.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ In file included from ./libmaus2/bambam/ReadEndsBlockIndexSet.hpp:22, from ./libmaus2/bambam/parallel/FragReadEndsMergeWorkPackageDispatcher.hpp:26, from ./libmaus2/bambam/parallel/BlockSortControl.hpp:42, from test/testparallelbamblocksort.cpp:20: ./libmaus2/bambam/DupMarkBase.hpp: In static member function ‘static uint64_t libmaus2::bambam::DupMarkBase::markDuplicatePairs(std::vector&, libmaus2::bambam::DupSetCallback&, unsigned int)’: ./libmaus2/bambam/DupMarkBase.hpp:260:74: note: parameter passing for argument of type ‘const __gnu_cxx::__normal_iterator >’ changed in GCC 7.1 return markDuplicatePairsOpt(lfrags_a,lfrags_e,DSC,optminpixeldif,0 /* mark opt */); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/ChecksumsInterface.hpp:22, from ./libmaus2/bambam/ChecksumsFactory.hpp:22, from ./libmaus2/bambam/ChecksumsInterfaceAllocator.hpp:22, from ./libmaus2/bambam/parallel/BlockMergeControl.hpp:27, from test/testparallelbamblocksort.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In member function ‘void libmaus2::bambam::BamHeaderLowMem::setupFromText()’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1971:31: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__final_insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ./libmaus2/bambam/BamHeader.hpp:35, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/ChecksumsInterface.hpp:22, from ./libmaus2/bambam/ChecksumsFactory.hpp:22, from ./libmaus2/bambam/ChecksumsInterfaceAllocator.hpp:22, from ./libmaus2/bambam/parallel/BlockMergeControl.hpp:27, from test/testparallelbamblocksort.cpp:19: ./libmaus2/hashing/ConstantStringHash.hpp:71:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 unique_ptr_type u(new this_type(ita,ite,maxn)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/hashing/ConstantStringHash.hpp: In member function ‘void libmaus2::bambam::BamHeader::initSetup()’: ./libmaus2/hashing/ConstantStringHash.hpp:86:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 shared_ptr_type s(new this_type(ita,ite,maxn)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/ChecksumsInterface.hpp:22, from ./libmaus2/bambam/ChecksumsFactory.hpp:22, from ./libmaus2/bambam/ChecksumsInterfaceAllocator.hpp:22, from ./libmaus2/bambam/parallel/BlockMergeControl.hpp:27, from test/testparallelbamblocksort.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void libmaus2::bambam::BamHeader::init(stream_type&) [with stream_type = std::__cxx11::basic_istringstream]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/ChecksumsInterface.hpp:22, from ./libmaus2/bambam/ChecksumsFactory.hpp:22, from ./libmaus2/bambam/ChecksumsInterfaceAllocator.hpp:22, from ./libmaus2/bambam/parallel/BlockMergeControl.hpp:27, from test/testparallelbamblocksort.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In member function ‘void libmaus2::bambam::BamIndexGenerator::addBlock(const uint8_t*, uint64_t, uint64_t)’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/map:60, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/ChecksumsInterface.hpp:22, from ./libmaus2/bambam/ChecksumsFactory.hpp:22, from ./libmaus2/bambam/ChecksumsInterfaceAllocator.hpp:22, from ./libmaus2/bambam/parallel/BlockMergeControl.hpp:27, from test/testparallelbamblocksort.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h: In member function ‘void std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_erase_aux(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator) [with _Key = long long int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:2489:5: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/ChecksumsInterface.hpp:22, from ./libmaus2/bambam/ChecksumsFactory.hpp:22, from ./libmaus2/bambam/ChecksumsInterfaceAllocator.hpp:22, from ./libmaus2/bambam/parallel/BlockMergeControl.hpp:27, from test/testparallelbamblocksort.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::parallel::GenericInputControlCompressionPending&}; _Tp = libmaus2::bambam::parallel::GenericInputControlCompressionPending; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/ChecksumsInterface.hpp:22, from ./libmaus2/bambam/ChecksumsFactory.hpp:22, from ./libmaus2/bambam/ChecksumsInterfaceAllocator.hpp:22, from ./libmaus2/bambam/parallel/BlockMergeControl.hpp:27, from test/testparallelbamblocksort.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = libmaus2::bambam::parallel::GenericInputControlCompressionPending; _Compare = __gnu_cxx::__ops::_Iter_comp_val]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = libmaus2::bambam::parallel::SmallLinearBlockCompressionPendingObject; _Compare = __gnu_cxx::__ops::_Iter_comp_val]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/arm-linux-gnueabi/include/c++/8/map:60, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/ChecksumsInterface.hpp:22, from ./libmaus2/bambam/ChecksumsFactory.hpp:22, from ./libmaus2/bambam/ChecksumsInterfaceAllocator.hpp:22, from ./libmaus2/bambam/parallel/BlockMergeControl.hpp:27, from test/testparallelbamblocksort.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h: In member function ‘void std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_erase_aux(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator) [with _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:2489:5: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/ChecksumsInterface.hpp:22, from ./libmaus2/bambam/ChecksumsFactory.hpp:22, from ./libmaus2/bambam/ChecksumsInterfaceAllocator.hpp:22, from ./libmaus2/bambam/parallel/BlockMergeControl.hpp:27, from test/testparallelbamblocksort.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = libmaus2::bambam::parallel::WritePendingObject; _Compare = __gnu_cxx::__ops::_Iter_comp_val]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = libmaus2::bambam::parallel::GenericInputControlSubBlockPending; _Compare = __gnu_cxx::__ops::_Iter_comp_val]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/ChecksumsInterface.hpp:22, from ./libmaus2/bambam/ChecksumsFactory.hpp:22, from ./libmaus2/bambam/ChecksumsInterfaceAllocator.hpp:22, from ./libmaus2/bambam/parallel/BlockMergeControl.hpp:27, from test/testparallelbamblocksort.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::parallel::DecompressedPendingObject&}; _Tp = libmaus2::bambam::parallel::DecompressedPendingObject; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector >::iterator’ {aka ‘__gnu_cxx::__normal_iterator > >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/ChecksumsInterface.hpp:22, from ./libmaus2/bambam/ChecksumsFactory.hpp:22, from ./libmaus2/bambam/ChecksumsInterfaceAllocator.hpp:22, from ./libmaus2/bambam/parallel/BlockMergeControl.hpp:27, from test/testparallelbamblocksort.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::bambam::parallel::DecompressedPendingObject; _Compare = __gnu_cxx::__ops::_Iter_comp_val]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/ChecksumsInterface.hpp:22, from ./libmaus2/bambam/ChecksumsFactory.hpp:22, from ./libmaus2/bambam/ChecksumsInterfaceAllocator.hpp:22, from ./libmaus2/bambam/parallel/BlockMergeControl.hpp:27, from test/testparallelbamblocksort.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In member function ‘void libmaus2::parallel::LockedHeap<_value_type, _comparator_type>::push(libmaus2::parallel::LockedHeap<_value_type, _comparator_type>::value_type) [with _value_type = libmaus2::bambam::parallel::DecompressedPendingObject; _comparator_type = libmaus2::bambam::parallel::DecompressedPendingObjectHeapComparator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/ChecksumsInterface.hpp:22, from ./libmaus2/bambam/ChecksumsFactory.hpp:22, from ./libmaus2/bambam/ChecksumsInterfaceAllocator.hpp:22, from ./libmaus2/bambam/parallel/BlockMergeControl.hpp:27, from test/testparallelbamblocksort.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::parallel::SmallLinearBlockCompressionPendingObject}; _Tp = libmaus2::bambam::parallel::SmallLinearBlockCompressionPendingObject; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {libmaus2::bambam::parallel::SmallLinearBlockCompressionPendingObject}; _Tp = libmaus2::bambam::parallel::SmallLinearBlockCompressionPendingObject; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/map:60, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/ChecksumsInterface.hpp:22, from ./libmaus2/bambam/ChecksumsFactory.hpp:22, from ./libmaus2/bambam/ChecksumsInterfaceAllocator.hpp:22, from ./libmaus2/bambam/parallel/BlockMergeControl.hpp:27, from test/testparallelbamblocksort.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/map:61, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/ChecksumsInterface.hpp:22, from ./libmaus2/bambam/ChecksumsFactory.hpp:22, from ./libmaus2/bambam/ChecksumsInterfaceAllocator.hpp:22, from ./libmaus2/bambam/parallel/BlockMergeControl.hpp:27, from test/testparallelbamblocksort.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = bool; _Compare = std::less; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/ChecksumsInterface.hpp:22, from ./libmaus2/bambam/ChecksumsFactory.hpp:22, from ./libmaus2/bambam/ChecksumsInterfaceAllocator.hpp:22, from ./libmaus2/bambam/parallel/BlockMergeControl.hpp:27, from test/testparallelbamblocksort.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::parallel::WritePendingObject}; _Tp = libmaus2::bambam::parallel::WritePendingObject; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/map:60, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/ChecksumsInterface.hpp:22, from ./libmaus2/bambam/ChecksumsFactory.hpp:22, from ./libmaus2/bambam/ChecksumsInterfaceAllocator.hpp:22, from ./libmaus2/bambam/parallel/BlockMergeControl.hpp:27, from test/testparallelbamblocksort.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair > >; _KeyOfValue = std::_Select1st > > >; _Compare = std::less; _Alloc = std::allocator > > >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type ‘std::_Rb_tree > >, std::_Select1st > > >, std::less, std::allocator > > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > > >’} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair > >; _KeyOfValue = std::_Select1st > > >; _Compare = std::less; _Alloc = std::allocator > > >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type ‘std::_Rb_tree > >, std::_Select1st > > >, std::less, std::allocator > > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > > >’} changed in GCC 7.1 In file included from /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/ChecksumsInterface.hpp:22, from ./libmaus2/bambam/ChecksumsFactory.hpp:22, from ./libmaus2/bambam/ChecksumsInterfaceAllocator.hpp:22, from ./libmaus2/bambam/parallel/BlockMergeControl.hpp:27, from test/testparallelbamblocksort.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = libmaus2::bambam::parallel::GenericInputControlCompressionPending; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/ChecksumsInterface.hpp:22, from ./libmaus2/bambam/ChecksumsFactory.hpp:22, from ./libmaus2/bambam/ChecksumsInterfaceAllocator.hpp:22, from ./libmaus2/bambam/parallel/BlockMergeControl.hpp:27, from test/testparallelbamblocksort.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In member function ‘void libmaus2::bambam::parallel::BlockMergeControl<_heap_element_type>::genericInputControlBlockCompressionFinished(libmaus2::bambam::parallel::GenericInputControlCompressionPending) [with _heap_element_type = libmaus2::bambam::parallel::GenericInputControlMergeHeapEntryCoordinate]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In member function ‘virtual void libmaus2::bambam::parallel::BlockMergeControl::_ZThn60_N8libmaus26bambam8parallel17BlockMergeControlINS1_43GenericInputControlMergeHeapEntryCoordinateEE43genericInputControlBlockCompressionFinishedENS1_37GenericInputControlCompressionPendingE(libmaus2::bambam::parallel::GenericInputControlCompressionPending)’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In member function ‘void libmaus2::bambam::parallel::BlockMergeControl<_heap_element_type>::genericInputControlBlockCompressionFinished(libmaus2::bambam::parallel::GenericInputControlCompressionPending) [with _heap_element_type = libmaus2::bambam::parallel::GenericInputControlMergeHeapEntryQueryName]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In member function ‘virtual void libmaus2::bambam::parallel::BlockMergeControl::_ZThn60_N8libmaus26bambam8parallel17BlockMergeControlINS1_42GenericInputControlMergeHeapEntryQueryNameEE43genericInputControlBlockCompressionFinishedENS1_37GenericInputControlCompressionPendingE(libmaus2::bambam::parallel::GenericInputControlCompressionPending)’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/map:60, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/ChecksumsInterface.hpp:22, from ./libmaus2/bambam/ChecksumsFactory.hpp:22, from ./libmaus2/bambam/ChecksumsInterfaceAllocator.hpp:22, from ./libmaus2/bambam/parallel/BlockMergeControl.hpp:27, from test/testparallelbamblocksort.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/map:61, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/ChecksumsInterface.hpp:22, from ./libmaus2/bambam/ChecksumsFactory.hpp:22, from ./libmaus2/bambam/ChecksumsInterfaceAllocator.hpp:22, from ./libmaus2/bambam/parallel/BlockMergeControl.hpp:27, from test/testparallelbamblocksort.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabi/include/c++/8/map:60, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/ChecksumsInterface.hpp:22, from ./libmaus2/bambam/ChecksumsFactory.hpp:22, from ./libmaus2/bambam/ChecksumsInterfaceAllocator.hpp:22, from ./libmaus2/bambam/parallel/BlockMergeControl.hpp:27, from test/testparallelbamblocksort.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/ChecksumsInterface.hpp:22, from ./libmaus2/bambam/ChecksumsFactory.hpp:22, from ./libmaus2/bambam/ChecksumsInterfaceAllocator.hpp:22, from ./libmaus2/bambam/parallel/BlockMergeControl.hpp:27, from test/testparallelbamblocksort.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::parallel::GenericInputControlSubBlockPending}; _Tp = libmaus2::bambam::parallel::GenericInputControlSubBlockPending; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {libmaus2::bambam::parallel::GenericInputControlSubBlockPending}; _Tp = libmaus2::bambam::parallel::GenericInputControlSubBlockPending; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/map:60, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/ChecksumsInterface.hpp:22, from ./libmaus2/bambam/ChecksumsFactory.hpp:22, from ./libmaus2/bambam/ChecksumsInterfaceAllocator.hpp:22, from ./libmaus2/bambam/parallel/BlockMergeControl.hpp:27, from test/testparallelbamblocksort.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/map:61, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/ChecksumsInterface.hpp:22, from ./libmaus2/bambam/ChecksumsFactory.hpp:22, from ./libmaus2/bambam/ChecksumsInterfaceAllocator.hpp:22, from ./libmaus2/bambam/parallel/BlockMergeControl.hpp:27, from test/testparallelbamblocksort.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabi/include/c++/8/map:60, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/ChecksumsInterface.hpp:22, from ./libmaus2/bambam/ChecksumsFactory.hpp:22, from ./libmaus2/bambam/ChecksumsInterfaceAllocator.hpp:22, from ./libmaus2/bambam/parallel/BlockMergeControl.hpp:27, from test/testparallelbamblocksort.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h: In member function ‘void libmaus2::bambam::parallel::BlockSortControl<_order_type, _create_dup_mark_info>::smallLinearBlockCompressionPendingObjectFinished(const libmaus2::bambam::parallel::SmallLinearBlockCompressionPendingObject&) [with _order_type = libmaus2::bambam::parallel::FragmentAlignmentBufferPosComparator; bool _create_dup_mark_info = true]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h: In member function ‘void libmaus2::bambam::parallel::BlockSortControl<_order_type, _create_dup_mark_info>::smallLinearBlockCompressionPendingObjectFinished(const libmaus2::bambam::parallel::SmallLinearBlockCompressionPendingObject&) [with _order_type = libmaus2::bambam::parallel::FragmentAlignmentBufferQueryNameComparator; bool _create_dup_mark_info = false]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/ChecksumsInterface.hpp:22, from ./libmaus2/bambam/ChecksumsFactory.hpp:22, from ./libmaus2/bambam/ChecksumsInterfaceAllocator.hpp:22, from ./libmaus2/bambam/parallel/BlockMergeControl.hpp:27, from test/testparallelbamblocksort.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = libmaus2::bambam::parallel::SmallLinearBlockCompressionPendingObject; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = libmaus2::bambam::parallel::WritePendingObject; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter > >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/ChecksumsInterface.hpp:22, from ./libmaus2/bambam/ChecksumsFactory.hpp:22, from ./libmaus2/bambam/ChecksumsInterfaceAllocator.hpp:22, from ./libmaus2/bambam/parallel/BlockMergeControl.hpp:27, from test/testparallelbamblocksort.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void libmaus2::bambam::parallel::BlockSortControl<_order_type, _create_dup_mark_info>::addWritePendingBgzfBlock(int64_t, int64_t, libmaus2::lz::BgzfDeflateOutputBufferBase::shared_ptr_type, const libmaus2::lz::BgzfDeflateZStreamBaseFlushInfo&) [with _order_type = libmaus2::bambam::parallel::FragmentAlignmentBufferPosComparator; bool _create_dup_mark_info = true]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void libmaus2::bambam::parallel::BlockSortControl<_order_type, _create_dup_mark_info>::addWritePendingBgzfBlock(int64_t, int64_t, libmaus2::lz::BgzfDeflateOutputBufferBase::shared_ptr_type, const libmaus2::lz::BgzfDeflateZStreamBaseFlushInfo&) [with _order_type = libmaus2::bambam::parallel::FragmentAlignmentBufferQueryNameComparator; bool _create_dup_mark_info = false]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/map:60, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/ChecksumsInterface.hpp:22, from ./libmaus2/bambam/ChecksumsFactory.hpp:22, from ./libmaus2/bambam/ChecksumsInterfaceAllocator.hpp:22, from ./libmaus2/bambam/parallel/BlockMergeControl.hpp:27, from test/testparallelbamblocksort.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h: In member function ‘void libmaus2::bambam::parallel::BlockSortControl<_order_type, _create_dup_mark_info>::validateBlockFragmentFinished(libmaus2::bambam::parallel::ValidationFragment&, bool) [with _order_type = libmaus2::bambam::parallel::FragmentAlignmentBufferPosComparator; bool _create_dup_mark_info = true]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h: In member function ‘void libmaus2::bambam::parallel::BlockSortControl<_order_type, _create_dup_mark_info>::fragmentAlignmentBufferReorderWorkPackageFinished(libmaus2::bambam::parallel::FragmentAlignmentBufferReorderWorkPackage*) [with _order_type = libmaus2::bambam::parallel::FragmentAlignmentBufferPosComparator; bool _create_dup_mark_info = true]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h: In member function ‘void libmaus2::bambam::parallel::BlockSortControl<_order_type, _create_dup_mark_info>::validateBlockFragmentFinished(libmaus2::bambam::parallel::ValidationFragment&, bool) [with _order_type = libmaus2::bambam::parallel::FragmentAlignmentBufferQueryNameComparator; bool _create_dup_mark_info = false]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h: In member function ‘void libmaus2::bambam::parallel::BlockSortControl<_order_type, _create_dup_mark_info>::fragmentAlignmentBufferReorderWorkPackageFinished(libmaus2::bambam::parallel::FragmentAlignmentBufferReorderWorkPackage*) [with _order_type = libmaus2::bambam::parallel::FragmentAlignmentBufferQueryNameComparator; bool _create_dup_mark_info = false]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/ChecksumsInterface.hpp:22, from ./libmaus2/bambam/ChecksumsFactory.hpp:22, from ./libmaus2/bambam/ChecksumsInterfaceAllocator.hpp:22, from ./libmaus2/bambam/parallel/BlockMergeControl.hpp:27, from test/testparallelbamblocksort.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In member function ‘void libmaus2::bambam::parallel::BlockMergeControl<_heap_element_type>::checkCompressionPending() [with _heap_element_type = libmaus2::bambam::parallel::GenericInputControlMergeHeapEntryCoordinate]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/map:60, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/ChecksumsInterface.hpp:22, from ./libmaus2/bambam/ChecksumsFactory.hpp:22, from ./libmaus2/bambam/ChecksumsInterfaceAllocator.hpp:22, from ./libmaus2/bambam/parallel/BlockMergeControl.hpp:27, from test/testparallelbamblocksort.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h: In member function ‘void libmaus2::bambam::parallel::BlockMergeControl<_heap_element_type>::bamBlockIndexingBlockFinished(libmaus2::bambam::parallel::GenericInputControlCompressionPending) [with _heap_element_type = libmaus2::bambam::parallel::GenericInputControlMergeHeapEntryCoordinate]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/ChecksumsInterface.hpp:22, from ./libmaus2/bambam/ChecksumsFactory.hpp:22, from ./libmaus2/bambam/ChecksumsInterfaceAllocator.hpp:22, from ./libmaus2/bambam/parallel/BlockMergeControl.hpp:27, from test/testparallelbamblocksort.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In member function ‘void libmaus2::bambam::parallel::BlockMergeControl<_heap_element_type>::checkCompressionPending() [with _heap_element_type = libmaus2::bambam::parallel::GenericInputControlMergeHeapEntryQueryName]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/map:60, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/ChecksumsInterface.hpp:22, from ./libmaus2/bambam/ChecksumsFactory.hpp:22, from ./libmaus2/bambam/ChecksumsInterfaceAllocator.hpp:22, from ./libmaus2/bambam/parallel/BlockMergeControl.hpp:27, from test/testparallelbamblocksort.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h: In member function ‘void libmaus2::bambam::parallel::BlockMergeControl<_heap_element_type>::bamBlockIndexingBlockFinished(libmaus2::bambam::parallel::GenericInputControlCompressionPending) [with _heap_element_type = libmaus2::bambam::parallel::GenericInputControlMergeHeapEntryQueryName]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/ChecksumsInterface.hpp:22, from ./libmaus2/bambam/ChecksumsFactory.hpp:22, from ./libmaus2/bambam/ChecksumsInterfaceAllocator.hpp:22, from ./libmaus2/bambam/parallel/BlockMergeControl.hpp:27, from test/testparallelbamblocksort.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::bambam::parallel::DecompressedPendingObject; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/map:61, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/ChecksumsInterface.hpp:22, from ./libmaus2/bambam/ChecksumsFactory.hpp:22, from ./libmaus2/bambam/ChecksumsInterfaceAllocator.hpp:22, from ./libmaus2/bambam/parallel/BlockMergeControl.hpp:27, from test/testparallelbamblocksort.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h: In member function ‘void libmaus2::bambam::parallel::BlockMergeControl<_heap_element_type>::checkRewriteReorderQueue() [with _heap_element_type = libmaus2::bambam::parallel::GenericInputControlMergeHeapEntryCoordinate]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:518:8: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h: In member function ‘void libmaus2::bambam::parallel::BlockMergeControl<_heap_element_type>::checkRewriteReorderQueue() [with _heap_element_type = libmaus2::bambam::parallel::GenericInputControlMergeHeapEntryQueryName]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:518:8: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/ChecksumsInterface.hpp:22, from ./libmaus2/bambam/ChecksumsFactory.hpp:22, from ./libmaus2/bambam/ChecksumsInterfaceAllocator.hpp:22, from ./libmaus2/bambam/parallel/BlockMergeControl.hpp:27, from test/testparallelbamblocksort.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::sorting::ParallelStableSort::MergeLevel}; _Tp = libmaus2::sorting::ParallelStableSort::MergeLevel; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/map:60, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/ChecksumsInterface.hpp:22, from ./libmaus2/bambam/ChecksumsFactory.hpp:22, from ./libmaus2/bambam/ChecksumsInterfaceAllocator.hpp:22, from ./libmaus2/bambam/parallel/BlockMergeControl.hpp:27, from test/testparallelbamblocksort.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h: In member function ‘void libmaus2::bambam::parallel::BlockSortControl<_order_type, _create_dup_mark_info>::fragmentAlignmentBufferRewriteFragmentComplete(libmaus2::bambam::parallel::AlignmentBuffer::shared_ptr_type&, libmaus2::bambam::parallel::FragmentAlignmentBuffer::shared_ptr_type&, uint64_t) [with _order_type = libmaus2::bambam::parallel::FragmentAlignmentBufferPosComparator; bool _create_dup_mark_info = true]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/ChecksumsInterface.hpp:22, from ./libmaus2/bambam/ChecksumsFactory.hpp:22, from ./libmaus2/bambam/ChecksumsInterfaceAllocator.hpp:22, from ./libmaus2/bambam/parallel/BlockMergeControl.hpp:27, from test/testparallelbamblocksort.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/map:61, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/ChecksumsInterface.hpp:22, from ./libmaus2/bambam/ChecksumsFactory.hpp:22, from ./libmaus2/bambam/ChecksumsInterfaceAllocator.hpp:22, from ./libmaus2/bambam/parallel/BlockMergeControl.hpp:27, from test/testparallelbamblocksort.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree > >, std::_Select1st > > >, std::less, std::allocator > > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > > >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/ChecksumsInterface.hpp:22, from ./libmaus2/bambam/ChecksumsFactory.hpp:22, from ./libmaus2/bambam/ChecksumsInterfaceAllocator.hpp:22, from ./libmaus2/bambam/parallel/BlockMergeControl.hpp:27, from test/testparallelbamblocksort.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::sorting::ParallelStableSort::MergeLevel}; _Tp = libmaus2::sorting::ParallelStableSort::MergeLevel; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/map:60, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/ChecksumsInterface.hpp:22, from ./libmaus2/bambam/ChecksumsFactory.hpp:22, from ./libmaus2/bambam/ChecksumsInterfaceAllocator.hpp:22, from ./libmaus2/bambam/parallel/BlockMergeControl.hpp:27, from test/testparallelbamblocksort.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h: In member function ‘void libmaus2::bambam::parallel::BlockSortControl<_order_type, _create_dup_mark_info>::fragmentAlignmentBufferRewriteFragmentComplete(libmaus2::bambam::parallel::AlignmentBuffer::shared_ptr_type&, libmaus2::bambam::parallel::FragmentAlignmentBuffer::shared_ptr_type&, uint64_t) [with _order_type = libmaus2::bambam::parallel::FragmentAlignmentBufferQueryNameComparator; bool _create_dup_mark_info = false]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/ChecksumsInterface.hpp:22, from ./libmaus2/bambam/ChecksumsFactory.hpp:22, from ./libmaus2/bambam/ChecksumsInterfaceAllocator.hpp:22, from ./libmaus2/bambam/parallel/BlockMergeControl.hpp:27, from test/testparallelbamblocksort.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/map:61, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/ChecksumsInterface.hpp:22, from ./libmaus2/bambam/ChecksumsFactory.hpp:22, from ./libmaus2/bambam/ChecksumsInterfaceAllocator.hpp:22, from ./libmaus2/bambam/parallel/BlockMergeControl.hpp:27, from test/testparallelbamblocksort.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree > >, std::_Select1st > > >, std::less, std::allocator > > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > > >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/bambam/libmaus2seqchksumsfactory_a-ChecksumsFactory.o `test -f 'libmaus2/bambam/ChecksumsFactory.cpp' || echo './'`libmaus2/bambam/ChecksumsFactory.cpp rm -f libmaus2seqchksumsfactory.a arm-linux-gnueabi-ar cru libmaus2seqchksumsfactory.a libmaus2/bambam/libmaus2seqchksumsfactory_a-ChecksumsFactory.o arm-linux-gnueabi-ar: `u' modifier ignored since `D' is the default (see `U') arm-linux-gnueabi-ranlib libmaus2seqchksumsfactory.a /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -Wl,-z,relro -o testparallelbamblocksort test/testparallelbamblocksort-testparallelbamblocksort.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -ldl libmaus2seqchksumsfactory.a libmaus2digests.a libmaus2digests_sse4.a -lrt -L/usr/lib/arm-linux-gnueabi -lz libtool: link: arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,relro -o .libs/testparallelbamblocksort test/testparallelbamblocksort-testparallelbamblocksort.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -ldl libmaus2seqchksumsfactory.a libmaus2digests.a libmaus2digests_sse4.a -lrt -L/usr/lib/arm-linux-gnueabi -lz -fopenmp -pthread arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testmapperm-testmapperm.o `test -f 'test/testmapperm.cpp' || echo './'`test/testmapperm.cpp In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/util/ArgInfo.hpp:35, from test/testmapperm.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘bool std::__next_permutation(_BidirectionalIterator, _BidirectionalIterator, _Compare) [with _BidirectionalIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:2905:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __next_permutation(_BidirectionalIterator __first, ^~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:2905:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/ArgInfo.hpp:25, from test/testmapperm.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In function ‘int main(int, char**)’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/util/ArgInfo.hpp:35, from test/testmapperm.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:2966:2: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 return std::__next_permutation ~~~~~~~~~~~~~~~~~~~~~~~ (__first, __last, __gnu_cxx::__ops::__iter_less_iter()); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testmapperm test/testmapperm-testmapperm.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/arm-linux-gnueabi -lz libtool: link: arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testmapperm test/testmapperm-testmapperm.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/arm-linux-gnueabi -lz -fopenmp -pthread arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testexternalmemoryindex-testexternalmemoryindex.o `test -f 'test/testexternalmemoryindex.cpp' || echo './'`test/testexternalmemoryindex.cpp In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/aio/PosixFdInput.hpp:40, from ./libmaus2/aio/PosixFdInputWrapper.hpp:22, from ./libmaus2/aio/PosixFdInputStream.hpp:22, from ./libmaus2/aio/PosixFdInputStreamFactory.hpp:23, from ./libmaus2/aio/InputStreamFactoryContainer.hpp:23, from ./libmaus2/index/ExternalMemoryIndexDecoder.hpp:23, from test/testexternalmemoryindex.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/aio/PosixFdInput.hpp:40, from ./libmaus2/aio/PosixFdInputWrapper.hpp:22, from ./libmaus2/aio/PosixFdInputStream.hpp:22, from ./libmaus2/aio/PosixFdInputStreamFactory.hpp:23, from ./libmaus2/aio/InputStreamFactoryContainer.hpp:23, from ./libmaus2/index/ExternalMemoryIndexDecoder.hpp:23, from test/testexternalmemoryindex.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In member function ‘uint64_t libmaus2::index::ExternalMemoryIndexGenerator<_data_type, _base_level_log, _inner_level_log>::flush() [with _data_type = SerialisableUint64; unsigned int _base_level_log = 10; unsigned int _inner_level_log = 2]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/aio/PosixFdInput.hpp:40, from ./libmaus2/aio/PosixFdInputWrapper.hpp:22, from ./libmaus2/aio/PosixFdInputStream.hpp:22, from ./libmaus2/aio/PosixFdInputStreamFactory.hpp:23, from ./libmaus2/aio/InputStreamFactoryContainer.hpp:23, from ./libmaus2/index/ExternalMemoryIndexDecoder.hpp:23, from test/testexternalmemoryindex.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testexternalmemoryindex test/testexternalmemoryindex-testexternalmemoryindex.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/arm-linux-gnueabi -lz libtool: link: arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testexternalmemoryindex test/testexternalmemoryindex-testexternalmemoryindex.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/arm-linux-gnueabi -lz -fopenmp -pthread arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testfastqtobam-testfastqtobam.o `test -f 'test/testfastqtobam.cpp' || echo './'`test/testfastqtobam.cpp In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/aio/PosixFdInput.hpp:40, from ./libmaus2/aio/PosixFdInputWrapper.hpp:22, from ./libmaus2/aio/PosixFdInputStream.hpp:22, from test/testfastqtobam.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::parallel::GenericInputControlCompressionPending&}; _Tp = libmaus2::bambam::parallel::GenericInputControlCompressionPending; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/lz/StreamWrapperBuffer.hpp:23, from ./libmaus2/lz/StreamWrapper.hpp:22, from ./libmaus2/aio/PosixFdInput.hpp:41, from ./libmaus2/aio/PosixFdInputWrapper.hpp:22, from ./libmaus2/aio/PosixFdInputStream.hpp:22, from test/testfastqtobam.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = libmaus2::bambam::parallel::GenericInputControlCompressionPending; _Compare = __gnu_cxx::__ops::_Iter_comp_val]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = libmaus2::bambam::parallel::FastqToBamControlSubReadPending; _Compare = __gnu_cxx::__ops::_Iter_comp_val]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/arm-linux-gnueabi/include/c++/8/map:60, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/lz/StreamWrapperBuffer.hpp:23, from ./libmaus2/lz/StreamWrapper.hpp:22, from ./libmaus2/aio/PosixFdInput.hpp:41, from ./libmaus2/aio/PosixFdInputWrapper.hpp:22, from ./libmaus2/aio/PosixFdInputStream.hpp:22, from test/testfastqtobam.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/map:61, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/lz/StreamWrapperBuffer.hpp:23, from ./libmaus2/lz/StreamWrapper.hpp:22, from ./libmaus2/aio/PosixFdInput.hpp:41, from ./libmaus2/aio/PosixFdInputWrapper.hpp:22, from ./libmaus2/aio/PosixFdInputStream.hpp:22, from test/testfastqtobam.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h: In member function ‘virtual void libmaus2::parallel::SimpleThreadPool::setTaskId(uint64_t, uint64_t)’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/lz/StreamWrapperBuffer.hpp:23, from ./libmaus2/lz/StreamWrapper.hpp:22, from ./libmaus2/aio/PosixFdInput.hpp:41, from ./libmaus2/aio/PosixFdInputWrapper.hpp:22, from ./libmaus2/aio/PosixFdInputStream.hpp:22, from test/testfastqtobam.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = libmaus2::bambam::parallel::GenericInputControlCompressionPending; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/aio/PosixFdInput.hpp:40, from ./libmaus2/aio/PosixFdInputWrapper.hpp:22, from ./libmaus2/aio/PosixFdInputStream.hpp:22, from test/testfastqtobam.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In member function ‘void libmaus2::bambam::parallel::FastqToBamControl::checkWritePendingQueue()’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In member function ‘void libmaus2::bambam::parallel::FastqToBamControl::checkCompressionPendingQueue()’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/lz/StreamWrapperBuffer.hpp:23, from ./libmaus2/lz/StreamWrapper.hpp:22, from ./libmaus2/aio/PosixFdInput.hpp:41, from ./libmaus2/aio/PosixFdInputWrapper.hpp:22, from ./libmaus2/aio/PosixFdInputStream.hpp:22, from test/testfastqtobam.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = libmaus2::bambam::parallel::FastqToBamControlSubReadPending; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/map:61, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/lz/StreamWrapperBuffer.hpp:23, from ./libmaus2/lz/StreamWrapper.hpp:22, from ./libmaus2/aio/PosixFdInput.hpp:41, from ./libmaus2/aio/PosixFdInputWrapper.hpp:22, from ./libmaus2/aio/PosixFdInputStream.hpp:22, from test/testfastqtobam.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h: In member function ‘virtual void* libmaus2::parallel::SimpleThreadPoolThread::run()’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabi/include/c++/8/memory:65, from ./libmaus2/exception/LibMausException.hpp:23, from ./libmaus2/aio/PosixFdInput.hpp:40, from ./libmaus2/aio/PosixFdInputWrapper.hpp:22, from ./libmaus2/aio/PosixFdInputStream.hpp:22, from test/testfastqtobam.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator; _ForwardIterator = libmaus2::bambam::parallel::FastqToBamControlSubReadPending*; bool _TrivialValueTypes = false]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_uninitialized.h:76:9: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 __uninit_copy(_InputIterator __first, _InputIterator __last, ^~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_uninitialized.h:76:9: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/aio/PosixFdInput.hpp:40, from ./libmaus2/aio/PosixFdInputWrapper.hpp:22, from ./libmaus2/aio/PosixFdInputStream.hpp:22, from test/testfastqtobam.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::parallel::FastqToBamControlSubReadPending&}; _Tp = libmaus2::bambam::parallel::FastqToBamControlSubReadPending; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/memory:65, from ./libmaus2/exception/LibMausException.hpp:23, from ./libmaus2/aio/PosixFdInput.hpp:40, from ./libmaus2/aio/PosixFdInputWrapper.hpp:22, from ./libmaus2/aio/PosixFdInputStream.hpp:22, from test/testfastqtobam.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_uninitialized.h:134:15: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 return std::__uninitialized_copy<__is_trivial(_ValueType1) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ && __is_trivial(_ValueType2) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ && __assignable>:: ~~~~~~~~~~~~~~~~~~ __uninit_copy(__first, __last, __result); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_uninitialized.h:134:15: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 return std::__uninitialized_copy<__is_trivial(_ValueType1) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ && __is_trivial(_ValueType2) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ && __assignable>:: ~~~~~~~~~~~~~~~~~~ __uninit_copy(__first, __last, __result); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/aio/PosixFdInput.hpp:40, from ./libmaus2/aio/PosixFdInputWrapper.hpp:22, from ./libmaus2/aio/PosixFdInputStream.hpp:22, from test/testfastqtobam.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In member function ‘void libmaus2::bambam::parallel::FastqToBamControl::checkSubReadPendingQueue()’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In member function ‘virtual void libmaus2::bambam::parallel::FastqToBamControl::genericInputControlBlockCompressionFinished(libmaus2::bambam::parallel::GenericInputControlCompressionPending)’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testfastqtobam test/testfastqtobam-testfastqtobam.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/arm-linux-gnueabi -lz libtool: link: arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testfastqtobam test/testfastqtobam-testfastqtobam.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/arm-linux-gnueabi -lz -fopenmp -pthread arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testsamrecoding-testsamrecoding.o `test -f 'test/testsamrecoding.cpp' || echo './'`test/testsamrecoding.cpp In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/ArgInfo.hpp:25, from test/testsamrecoding.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::ReadGroup&}; _Tp = libmaus2::bambam::ReadGroup; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/ArgInfo.hpp:25, from test/testsamrecoding.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/ArgInfo.hpp:25, from test/testsamrecoding.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::pair&}; _Tp = std::pair; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector > >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector > >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from ./libmaus2/bambam/BamHeader.hpp:35, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from ./libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from ./libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from test/testsamrecoding.cpp:20: ./libmaus2/hashing/ConstantStringHash.hpp: In constructor ‘libmaus2::hashing::ConstantStringHash::ConstantStringHash(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]’: ./libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 ConstantStringHash(iterator ita, iterator ite, uint64_t const maxn = 64*1024) ^~~~~~~~~~~~~~~~~~ ./libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/ArgInfo.hpp:25, from test/testsamrecoding.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::BamAlignmentDecoderInfo}; _Tp = libmaus2::bambam::BamAlignmentDecoderInfo; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {libmaus2::bambam::BamAlignmentDecoderInfo}; _Tp = libmaus2::bambam::BamAlignmentDecoderInfo; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/map:60, from ./libmaus2/util/ArgInfo.hpp:24, from test/testsamrecoding.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h: In member function ‘void std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_erase_aux(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator) [with _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:2489:5: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/map:61, from ./libmaus2/util/ArgInfo.hpp:24, from test/testsamrecoding.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h: In member function ‘virtual void libmaus2::parallel::SimpleThreadPool::setTaskId(uint64_t, uint64_t)’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/ArgInfo.hpp:25, from test/testsamrecoding.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::trie::LinearTrieStateBase}; _Tp = libmaus2::trie::LinearTrieStateBase; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/util/ArgInfo.hpp:35, from test/testsamrecoding.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/ArgInfo.hpp:25, from test/testsamrecoding.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/map:60, from ./libmaus2/util/ArgInfo.hpp:24, from test/testsamrecoding.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/map:61, from ./libmaus2/util/ArgInfo.hpp:24, from test/testsamrecoding.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::set; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/ArgInfo.hpp:25, from test/testsamrecoding.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In static member function ‘static std::vector libmaus2::bambam::BamHeader::getReadGroups(const string&)’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/map:61, from ./libmaus2/util/ArgInfo.hpp:24, from test/testsamrecoding.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h: In member function ‘virtual void* libmaus2::parallel::SimpleThreadPoolThread::run()’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/util/ArgInfo.hpp:35, from test/testsamrecoding.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 __move_median_to_first(_Iterator __result,_Iterator __a, _Iterator __b, ^~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Val_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/ArgInfo.hpp:25, from test/testsamrecoding.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::Chromosome&}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/util/ArgInfo.hpp:35, from test/testsamrecoding.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_comp_val]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/ArgInfo.hpp:25, from test/testsamrecoding.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In member function ‘void libmaus2::bambam::BamMergeTemplate<_heap_comparator_type, _sort_check_type>::init() [with _heap_comparator_type = libmaus2::bambam::BamMergeCoordinateHeapComparator; _sort_check_type = libmaus2::bambam::BamCatHeader::IsCoordinateSorted]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/util/ArgInfo.hpp:35, from test/testsamrecoding.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 __move_median_to_first(_Iterator __result,_Iterator __a, _Iterator __b, ^~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘std::pair std::__equal_range(_ForwardIterator, _ForwardIterator, const _Tp&, _CompareItTp, _CompareTpIt) [with _ForwardIterator = __gnu_cxx::__normal_iterator >; _Tp = libmaus2::bambam::Chromosome; _CompareItTp = __gnu_cxx::__ops::_Iter_comp_val; _CompareTpIt = __gnu_cxx::__ops::_Val_comp_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:2124:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __equal_range(_ForwardIterator __first, _ForwardIterator __last, ^~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:2124:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In constructor ‘libmaus2::bambam::ChromosomeVectorMerge::ChromosomeVectorMerge(const std::vector*>&, bool)’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:2228:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 return std::__equal_range(__first, __last, __val, ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__iter_comp_val(__comp), ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__val_comp_iter(__comp)); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:2228:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 return std::__equal_range(__first, __last, __val, ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__iter_comp_val(__comp), ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__val_comp_iter(__comp)); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/map:61, from ./libmaus2/util/ArgInfo.hpp:24, from test/testsamrecoding.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabi/include/c++/8/map:60, from ./libmaus2/util/ArgInfo.hpp:24, from test/testsamrecoding.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator > >’} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/ArgInfo.hpp:25, from test/testsamrecoding.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/util/ArgInfo.hpp:35, from test/testsamrecoding.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:2228:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 return std::__equal_range(__first, __last, __val, ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__iter_comp_val(__comp), ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__val_comp_iter(__comp)); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/ArgInfo.hpp:25, from test/testsamrecoding.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from ./libmaus2/bambam/BamCatHeader.hpp:26, from ./libmaus2/bambam/BamMergeCoordinate.hpp:22, from ./libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:23, from test/testsamrecoding.cpp:20: ./libmaus2/bambam/ChromosomeVectorMerge.hpp:278:4: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 } ^ In file included from /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/util/ArgInfo.hpp:35, from test/testsamrecoding.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/util/ArgInfo.hpp:35, from test/testsamrecoding.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 std::__move_median_to_first(__first, __first + 1, __mid, __last - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/ArgInfo.hpp:25, from test/testsamrecoding.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In constructor ‘libmaus2::bambam::ReadGroupVectorMerge::ReadGroupVectorMerge(const std::vector*>&)’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/util/ArgInfo.hpp:35, from test/testsamrecoding.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/ArgInfo.hpp:25, from test/testsamrecoding.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/util/ArgInfo.hpp:35, from test/testsamrecoding.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/util/ArgInfo.hpp:35, from test/testsamrecoding.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/ArgInfo.hpp:25, from test/testsamrecoding.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In member function ‘void libmaus2::trie::LinearHashTrie<_char_type, _id_type>::fillDepthParent() [with _char_type = char; _id_type = unsigned int]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/util/ArgInfo.hpp:35, from test/testsamrecoding.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/ArgInfo.hpp:25, from test/testsamrecoding.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘typename libmaus2::trie::LinearHashTrie<_char_type, id_type>::unique_ptr_type libmaus2::trie::Trie<_char_type>::toLinearHashTrie() const [with id_type = unsigned int; _char_type = char]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/ArgInfo.hpp:25, from test/testsamrecoding.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/util/ArgInfo.hpp:35, from test/testsamrecoding.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/util/ArgInfo.hpp:35, from test/testsamrecoding.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 __heap_select(_RandomAccessIterator __first, ^~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 std::__move_median_to_first(__first, __first + 1, __mid, __last - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1933:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 std::__heap_select(__first, __middle, __last, __comp); ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/ArgInfo.hpp:25, from test/testsamrecoding.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In member function ‘std::vector > libmaus2::bambam::BamIndex::reg2chunks(uint64_t, uint64_t, uint64_t) const’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/util/ArgInfo.hpp:35, from test/testsamrecoding.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ./libmaus2/bambam/BamHeader.hpp:35, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from ./libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from ./libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from test/testsamrecoding.cpp:20: ./libmaus2/hashing/ConstantStringHash.hpp: In member function ‘void libmaus2::bambam::BamHeader::initSetup()’: ./libmaus2/hashing/ConstantStringHash.hpp:86:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 shared_ptr_type s(new this_type(ita,ite,maxn)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testsamrecoding test/testsamrecoding-testsamrecoding.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -ldl -lrt -L/usr/lib/arm-linux-gnueabi -lz libtool: link: arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testsamrecoding test/testsamrecoding-testsamrecoding.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -ldl -lrt -L/usr/lib/arm-linux-gnueabi -lz -fopenmp -pthread arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testdazzlerdb-testdazzlerdb.o `test -f 'test/testdazzlerdb.cpp' || echo './'`test/testdazzlerdb.cpp In file included from test/testdazzlerdb.cpp:29: ./libmaus2/lcs/NP.hpp: In instantiation of ‘int64_t libmaus2::lcs::NP::npTemplate(iter_a, iter_a, iter_b, iter_b) [with iter_a = const unsigned char*; iter_b = const unsigned char*; bool self_check = true; int64_t = long long int]’: ./libmaus2/lcs/NP.hpp:116:53: required from ‘int64_t libmaus2::lcs::NP::np(iter_a, iter_a, iter_b, iter_b, bool) [with iter_a = const unsigned char*; iter_b = const unsigned char*; int64_t = long long int]’ ./libmaus2/lcs/NP.hpp:104:23: required from here ./libmaus2/lcs/NP.hpp:908:46: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘long long int’ [-Wsign-compare] if ( AlignmentTraceContainer::capacity() <= std::min(an,bn)+ed ) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ ./libmaus2/lcs/NP.hpp: In instantiation of ‘int64_t libmaus2::lcs::NP::npTemplate(iter_a, iter_a, iter_b, iter_b) [with iter_a = const unsigned char*; iter_b = const unsigned char*; bool self_check = false; int64_t = long long int]’: ./libmaus2/lcs/NP.hpp:118:54: required from ‘int64_t libmaus2::lcs::NP::np(iter_a, iter_a, iter_b, iter_b, bool) [with iter_a = const unsigned char*; iter_b = const unsigned char*; int64_t = long long int]’ ./libmaus2/lcs/NP.hpp:104:23: required from here ./libmaus2/lcs/NP.hpp:908:46: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘long long int’ [-Wsign-compare] In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/dazzler/db/InputBase.hpp:21, from ./libmaus2/dazzler/db/IndexBase.hpp:21, from ./libmaus2/dazzler/db/DatabaseFile.hpp:22, from ./libmaus2/dazzler/db/PartTrackContainer.hpp:21, from ./libmaus2/dazzler/align/TandemVectorPartContainer.hpp:21, from test/testdazzlerdb.cpp:18: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::dazzler::db::FastaInfo}; _Tp = libmaus2::dazzler::db::FastaInfo; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector > >’} changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In constructor ‘libmaus2::dazzler::db::DatabaseFile::DatabaseFile(const string&)’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/dazzler/db/InputBase.hpp:21, from ./libmaus2/dazzler/db/IndexBase.hpp:21, from ./libmaus2/dazzler/db/DatabaseFile.hpp:22, from ./libmaus2/dazzler/db/PartTrackContainer.hpp:21, from ./libmaus2/dazzler/align/TandemVectorPartContainer.hpp:21, from test/testdazzlerdb.cpp:18: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testdazzlerdb test/testdazzlerdb-testdazzlerdb.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -ldl -lrt -L/usr/lib/arm-linux-gnueabi -lz libtool: link: arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testdazzlerdb test/testdazzlerdb-testdazzlerdb.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -ldl -lrt -L/usr/lib/arm-linux-gnueabi -lz -fopenmp -pthread arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testnd-testnd.o `test -f 'test/testnd.cpp' || echo './'`test/testnd.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testnd test/testnd-testnd.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -ldl -lrt -L/usr/lib/arm-linux-gnueabi -lz libtool: link: arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testnd test/testnd-testnd.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -ldl -lrt -L/usr/lib/arm-linux-gnueabi -lz -fopenmp -pthread arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testfastashred-testfastashred.o `test -f 'test/testfastashred.cpp' || echo './'`test/testfastashred.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testfastashred test/testfastashred-testfastashred.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -ldl -lrt -L/usr/lib/arm-linux-gnueabi -lz libtool: link: arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testfastashred test/testfastashred-testfastashred.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -ldl -lrt -L/usr/lib/arm-linux-gnueabi -lz -fopenmp -pthread arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testalignerspeed-testalignerspeed.o `test -f 'test/testalignerspeed.cpp' || echo './'`test/testalignerspeed.cpp In file included from ./libmaus2/lcs/NPLinMem.hpp:22, from ./libmaus2/lcs/NNPCor.hpp:24, from test/testalignerspeed.cpp:18: ./libmaus2/lcs/NP.hpp: In instantiation of ‘int64_t libmaus2::lcs::NP::npTemplate(iter_a, iter_a, iter_b, iter_b) [with iter_a = const unsigned char*; iter_b = const unsigned char*; bool self_check = true; int64_t = long long int]’: ./libmaus2/lcs/NP.hpp:116:53: required from ‘int64_t libmaus2::lcs::NP::np(iter_a, iter_a, iter_b, iter_b, bool) [with iter_a = const unsigned char*; iter_b = const unsigned char*; int64_t = long long int]’ ./libmaus2/lcs/NP.hpp:104:23: required from here ./libmaus2/lcs/NP.hpp:908:46: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘long long int’ [-Wsign-compare] if ( AlignmentTraceContainer::capacity() <= std::min(an,bn)+ed ) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ ./libmaus2/lcs/NP.hpp: In instantiation of ‘int64_t libmaus2::lcs::NP::npTemplate(iter_a, iter_a, iter_b, iter_b) [with iter_a = const unsigned char*; iter_b = const unsigned char*; bool self_check = false; int64_t = long long int]’: ./libmaus2/lcs/NP.hpp:118:54: required from ‘int64_t libmaus2::lcs::NP::np(iter_a, iter_a, iter_b, iter_b, bool) [with iter_a = const unsigned char*; iter_b = const unsigned char*; int64_t = long long int]’ ./libmaus2/lcs/NP.hpp:104:23: required from here ./libmaus2/lcs/NP.hpp:908:46: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘long long int’ [-Wsign-compare] /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testalignerspeed test/testalignerspeed-testalignerspeed.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -ldl -lrt -L/usr/lib/arm-linux-gnueabi -lz libtool: link: arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testalignerspeed test/testalignerspeed-testalignerspeed.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -ldl -lrt -L/usr/lib/arm-linux-gnueabi -lz -fopenmp -pthread arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testfastasingleline-testfastasingleline.o `test -f 'test/testfastasingleline.cpp' || echo './'`test/testfastasingleline.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testfastasingleline test/testfastasingleline-testfastasingleline.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -ldl -lrt -L/usr/lib/arm-linux-gnueabi -lz libtool: link: arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testfastasingleline test/testfastasingleline-testfastasingleline.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -ldl -lrt -L/usr/lib/arm-linux-gnueabi -lz -fopenmp -pthread arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testdazzleralignmentrewrite-testdazzleralignmentrewrite.o `test -f 'test/testdazzleralignmentrewrite.cpp' || echo './'`test/testdazzleralignmentrewrite.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testdazzleralignmentrewrite test/testdazzleralignmentrewrite-testdazzleralignmentrewrite.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -ldl -lrt -L/usr/lib/arm-linux-gnueabi -lz libtool: link: arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testdazzleralignmentrewrite test/testdazzleralignmentrewrite-testdazzleralignmentrewrite.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -ldl -lrt -L/usr/lib/arm-linux-gnueabi -lz -fopenmp -pthread arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testxz-testxz.o `test -f 'test/testxz.cpp' || echo './'`test/testxz.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testxz test/testxz-testxz.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -ldl -lrt -L/usr/lib/arm-linux-gnueabi -lz libtool: link: arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testxz test/testxz-testxz.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -ldl -lrt -L/usr/lib/arm-linux-gnueabi -lz -fopenmp -pthread arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testdazzlerindex-testdazzlerindex.o `test -f 'test/testdazzlerindex.cpp' || echo './'`test/testdazzlerindex.cpp In file included from /usr/arm-linux-gnueabi/include/c++/8/map:60, from ./libmaus2/util/ArgInfo.hpp:24, from test/testdazzlerindex.cpp:18: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/map:61, from ./libmaus2/util/ArgInfo.hpp:24, from test/testdazzlerindex.cpp:18: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h: In function ‘int main(int, char**)’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:518:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:518:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testdazzlerindex test/testdazzlerindex-testdazzlerindex.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -ldl -lrt -L/usr/lib/arm-linux-gnueabi -lz libtool: link: arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testdazzlerindex test/testdazzlerindex-testdazzlerindex.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -ldl -lrt -L/usr/lib/arm-linux-gnueabi -lz -fopenmp -pthread arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testargparser-testargparser.o `test -f 'test/testargparser.cpp' || echo './'`test/testargparser.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testargparser test/testargparser-testargparser.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -ldl -lrt -L/usr/lib/arm-linux-gnueabi -lz libtool: link: arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testargparser test/testargparser-testargparser.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -ldl -lrt -L/usr/lib/arm-linux-gnueabi -lz -fopenmp -pthread arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testfragmentenvelope-testfragmentenvelope.o `test -f 'test/testfragmentenvelope.cpp' || echo './'`test/testfragmentenvelope.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testfragmentenvelope test/testfragmentenvelope-testfragmentenvelope.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -ldl -lrt -L/usr/lib/arm-linux-gnueabi -lz libtool: link: arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testfragmentenvelope test/testfragmentenvelope-testfragmentenvelope.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -ldl -lrt -L/usr/lib/arm-linux-gnueabi -lz -fopenmp -pthread arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testdnarank-testdnarank.o `test -f 'test/testdnarank.cpp' || echo './'`test/testdnarank.cpp In file included from /usr/arm-linux-gnueabi/include/c++/8/cassert:44, from ./libmaus2/util/IntervalTree.hpp:28, from ./libmaus2/gamma/GammaRLDecoder.hpp:28, from ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:28, from ./libmaus2/wavelet/RlToHwtBase.hpp:30, from test/testdnarank.cpp:29: ./libmaus2/wavelet/RlToHwtBase.hpp: In instantiation of ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtSmallAlphabet(const string&, const libmaus2::huffman::HuffmanTree&, uint64_t) [with entity_type = unsigned char; bool _utf8_input_type = false; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::__cxx11::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’: test/testdnarank.cpp:76:169: required from ‘void testLong(const string&, uint64_t) [with rank_type = libmaus2::rank::DNARankTemplate<64>; std::__cxx11::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’ test/testdnarank.cpp:213:51: required from here ./libmaus2/wavelet/RlToHwtBase.hpp:809:46: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] assert ( symtonodesp-symtonodes.begin() == symtonodevecoffsets[sym] ); In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/parallel/PosixSpinLock.hpp:23, from ./libmaus2/aio/StreamLock.hpp:21, from ./libmaus2/autoarray/GenericAlignedAllocation.hpp:23, from ./libmaus2/autoarray/AutoArray.hpp:26, from ./libmaus2/rank/DNARankSMEMContext.hpp:22, from ./libmaus2/rank/DNARank.hpp:21, from ./libmaus2/rank/DNARankSuffixTreeNodeEnumerator.hpp:22, from test/testdnarank.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long int&}; _Tp = long long int; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/parallel/PosixSpinLock.hpp:23, from ./libmaus2/aio/StreamLock.hpp:21, from ./libmaus2/autoarray/GenericAlignedAllocation.hpp:23, from ./libmaus2/autoarray/AutoArray.hpp:26, from ./libmaus2/rank/DNARankSMEMContext.hpp:22, from ./libmaus2/rank/DNARank.hpp:21, from ./libmaus2/rank/DNARankSuffixTreeNodeEnumerator.hpp:22, from test/testdnarank.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In member function ‘virtual void libmaus2::huffman::HuffmanTreeLeaf::symbolVector(std::vector&) const’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from ./libmaus2/rank/DNARankSMEMContext.hpp:22, from ./libmaus2/rank/DNARank.hpp:21, from ./libmaus2/rank/DNARankSuffixTreeNodeEnumerator.hpp:22, from test/testdnarank.cpp:20: ./libmaus2/autoarray/AutoArray.hpp: In constructor ‘libmaus2::autoarray::AutoArray::AutoArray(uint64_t, bool) [with N = libmaus2::huffman::IndexEntry; libmaus2::autoarray::alloc_type atype = (libmaus2::autoarray::alloc_type)0; erase_type = libmaus2::autoarray::ArrayErase]’: ./libmaus2/autoarray/AutoArray.hpp:1801:5: warning: ‘’ may be used uninitialized in this function [-Wmaybe-uninitialized] array[i] = N(); ^~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/map:60, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/rank/DNARankSMEMContext.hpp:22, from ./libmaus2/rank/DNARank.hpp:21, from ./libmaus2/rank/DNARankSuffixTreeNodeEnumerator.hpp:22, from test/testdnarank.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = const libmaus2::huffman::HuffmanTreeLeaf*; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = const libmaus2::huffman::HuffmanTreeInnerNode*; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 In file included from /usr/arm-linux-gnueabi/include/c++/8/map:61, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/rank/DNARankSMEMContext.hpp:22, from ./libmaus2/rank/DNARank.hpp:21, from ./libmaus2/rank/DNARankSuffixTreeNodeEnumerator.hpp:22, from test/testdnarank.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h: In member function ‘virtual void libmaus2::huffman::HuffmanTreeInnerNode::toDot(std::ostream&) const’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/parallel/PosixSpinLock.hpp:23, from ./libmaus2/aio/StreamLock.hpp:21, from ./libmaus2/autoarray/GenericAlignedAllocation.hpp:23, from ./libmaus2/autoarray/AutoArray.hpp:26, from ./libmaus2/rank/DNARankSMEMContext.hpp:22, from ./libmaus2/rank/DNARank.hpp:21, from ./libmaus2/rank/DNARankSuffixTreeNodeEnumerator.hpp:22, from test/testdnarank.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::rank::DNARankMEM&}; _Tp = libmaus2::rank::DNARankMEM; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::huffman::IndexEntry}; _Tp = libmaus2::huffman::IndexEntry; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector > >’} changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector > >’} changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::rank::DNARankMEM}; _Tp = libmaus2::rank::DNARankMEM; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {libmaus2::rank::DNARankMEM}; _Tp = libmaus2::rank::DNARankMEM; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/rank/DNARankSMEMContext.hpp:22, from ./libmaus2/rank/DNARank.hpp:21, from ./libmaus2/rank/DNARankSuffixTreeNodeEnumerator.hpp:22, from test/testdnarank.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Val_comp_iter::DNARankMEMContComp>]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::DNARankMEMContComp>]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Val_comp_iter::DNARankMEMContComp>]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::DNARankMEMContComp>]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Val_comp_iter::DNARankMEMContComp>]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::DNARankMEMContComp>]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/parallel/PosixSpinLock.hpp:23, from ./libmaus2/aio/StreamLock.hpp:21, from ./libmaus2/autoarray/GenericAlignedAllocation.hpp:23, from ./libmaus2/autoarray/AutoArray.hpp:26, from ./libmaus2/rank/DNARankSMEMContext.hpp:22, from ./libmaus2/rank/DNARank.hpp:21, from ./libmaus2/rank/DNARankSuffixTreeNodeEnumerator.hpp:22, from test/testdnarank.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void libmaus2::huffman::RLEncoderBaseTemplate<_bit_writer_type>::implicitFlush() [with _bit_writer_type = libmaus2::huffman::HuffmanEncoderFileTemplate, libmaus2::bitio::FastWriteBitWriterTemplate >, 128, 255, false> >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/rank/DNARankSMEMContext.hpp:22, from ./libmaus2/rank/DNARank.hpp:21, from ./libmaus2/rank/DNARankSuffixTreeNodeEnumerator.hpp:22, from test/testdnarank.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = libmaus2::rank::DNARankMEM; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::DNARankMEMContComp>]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/rank/DNARankSMEMContext.hpp:22, from ./libmaus2/rank/DNARank.hpp:21, from ./libmaus2/rank/DNARankSuffixTreeNodeEnumerator.hpp:22, from test/testdnarank.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::DNARankMEMContComp>]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘_ZNK8libmaus24rank15DNARankTemplateILj64EE10testSearchEjy._omp_fn.18’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/parallel/PosixSpinLock.hpp:23, from ./libmaus2/aio/StreamLock.hpp:21, from ./libmaus2/autoarray/GenericAlignedAllocation.hpp:23, from ./libmaus2/autoarray/AutoArray.hpp:26, from ./libmaus2/rank/DNARankSMEMContext.hpp:22, from ./libmaus2/rank/DNARank.hpp:21, from ./libmaus2/rank/DNARankSuffixTreeNodeEnumerator.hpp:22, from test/testdnarank.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/rank/DNARankSMEMContext.hpp:22, from ./libmaus2/rank/DNARank.hpp:21, from ./libmaus2/rank/DNARankSuffixTreeNodeEnumerator.hpp:22, from test/testdnarank.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = libmaus2::rank::DNARankMEM; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::DNARankMEMContComp>]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/rank/DNARankSMEMContext.hpp:22, from ./libmaus2/rank/DNARank.hpp:21, from ./libmaus2/rank/DNARankSuffixTreeNodeEnumerator.hpp:22, from test/testdnarank.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::DNARankMEMContComp>]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘_ZNK8libmaus24rank15DNARankTemplateILj128EE10testSearchEjy._omp_fn.25’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/parallel/PosixSpinLock.hpp:23, from ./libmaus2/aio/StreamLock.hpp:21, from ./libmaus2/autoarray/GenericAlignedAllocation.hpp:23, from ./libmaus2/autoarray/AutoArray.hpp:26, from ./libmaus2/rank/DNARankSMEMContext.hpp:22, from ./libmaus2/rank/DNARank.hpp:21, from ./libmaus2/rank/DNARankSuffixTreeNodeEnumerator.hpp:22, from test/testdnarank.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/rank/DNARankSMEMContext.hpp:22, from ./libmaus2/rank/DNARank.hpp:21, from ./libmaus2/rank/DNARankSuffixTreeNodeEnumerator.hpp:22, from test/testdnarank.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = libmaus2::rank::DNARankMEM; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::DNARankMEMContComp>]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/rank/DNARankSMEMContext.hpp:22, from ./libmaus2/rank/DNARank.hpp:21, from ./libmaus2/rank/DNARankSuffixTreeNodeEnumerator.hpp:22, from test/testdnarank.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::DNARankMEMContComp>]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘_ZNK8libmaus24rank15DNARankTemplateILj256EE10testSearchEjy._omp_fn.28’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/parallel/PosixSpinLock.hpp:23, from ./libmaus2/aio/StreamLock.hpp:21, from ./libmaus2/autoarray/GenericAlignedAllocation.hpp:23, from ./libmaus2/autoarray/AutoArray.hpp:26, from ./libmaus2/rank/DNARankSMEMContext.hpp:22, from ./libmaus2/rank/DNARank.hpp:21, from ./libmaus2/rank/DNARankSuffixTreeNodeEnumerator.hpp:22, from test/testdnarank.cpp:20: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testdnarank test/testdnarank-testdnarank.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -ldl -lrt -L/usr/lib/arm-linux-gnueabi -lz libtool: link: arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testdnarank test/testdnarank-testdnarank.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -ldl -lrt -L/usr/lib/arm-linux-gnueabi -lz -fopenmp -pthread arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testlowbits-testlowbits.o `test -f 'test/testlowbits.cpp' || echo './'`test/testlowbits.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testlowbits test/testlowbits-testlowbits.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -ldl -lrt -L/usr/lib/arm-linux-gnueabi -lz libtool: link: arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testlowbits test/testlowbits-testlowbits.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -ldl -lrt -L/usr/lib/arm-linux-gnueabi -lz -fopenmp -pthread arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testfastaexplode-testfastaexplode.o `test -f 'test/testfastaexplode.cpp' || echo './'`test/testfastaexplode.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testfastaexplode test/testfastaexplode-testfastaexplode.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -ldl -lrt -L/usr/lib/arm-linux-gnueabi -lz libtool: link: arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testfastaexplode test/testfastaexplode-testfastaexplode.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -ldl -lrt -L/usr/lib/arm-linux-gnueabi -lz -fopenmp -pthread arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testfaextract-testfaextract.o `test -f 'test/testfaextract.cpp' || echo './'`test/testfaextract.cpp In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/parallel/PosixSpinLock.hpp:23, from ./libmaus2/aio/StreamLock.hpp:21, from ./libmaus2/autoarray/GenericAlignedAllocation.hpp:23, from ./libmaus2/autoarray/AutoArray.hpp:26, from ./libmaus2/fastx/FastAIndex.hpp:22, from test/testfaextract.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::fastx::FastAIndexEntry}; _Tp = libmaus2::fastx::FastAIndexEntry; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In constructor ‘libmaus2::fastx::FastAIndex::FastAIndex(std::istream&)’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testfaextract test/testfaextract-testfaextract.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -ldl -lrt -L/usr/lib/arm-linux-gnueabi -lz libtool: link: arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testfaextract test/testfaextract-testfaextract.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -ldl -lrt -L/usr/lib/arm-linux-gnueabi -lz -fopenmp -pthread arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testmurmur3-testmurmur3.o `test -f 'test/testmurmur3.cpp' || echo './'`test/testmurmur3.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testmurmur3 test/testmurmur3-testmurmur3.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -ldl -lrt -L/usr/lib/arm-linux-gnueabi -lz libtool: link: arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testmurmur3 test/testmurmur3-testmurmur3.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -ldl -lrt -L/usr/lib/arm-linux-gnueabi -lz -fopenmp -pthread arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testpairalign-testpairalign.o `test -f 'test/testpairalign.cpp' || echo './'`test/testpairalign.cpp In file included from test/testpairalign.cpp:20: ./libmaus2/lcs/NP.hpp: In instantiation of ‘int64_t libmaus2::lcs::NP::npTemplate(iter_a, iter_a, iter_b, iter_b) [with iter_a = const unsigned char*; iter_b = const unsigned char*; bool self_check = true; int64_t = long long int]’: ./libmaus2/lcs/NP.hpp:116:53: required from ‘int64_t libmaus2::lcs::NP::np(iter_a, iter_a, iter_b, iter_b, bool) [with iter_a = const unsigned char*; iter_b = const unsigned char*; int64_t = long long int]’ ./libmaus2/lcs/NP.hpp:104:23: required from here ./libmaus2/lcs/NP.hpp:908:46: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘long long int’ [-Wsign-compare] if ( AlignmentTraceContainer::capacity() <= std::min(an,bn)+ed ) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ ./libmaus2/lcs/NP.hpp: In instantiation of ‘int64_t libmaus2::lcs::NP::npTemplate(iter_a, iter_a, iter_b, iter_b) [with iter_a = const unsigned char*; iter_b = const unsigned char*; bool self_check = false; int64_t = long long int]’: ./libmaus2/lcs/NP.hpp:118:54: required from ‘int64_t libmaus2::lcs::NP::np(iter_a, iter_a, iter_b, iter_b, bool) [with iter_a = const unsigned char*; iter_b = const unsigned char*; int64_t = long long int]’ ./libmaus2/lcs/NP.hpp:104:23: required from here ./libmaus2/lcs/NP.hpp:908:46: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘long long int’ [-Wsign-compare] ./libmaus2/lcs/NP.hpp: In instantiation of ‘int64_t libmaus2::lcs::NP::npTemplate(iter_a, iter_a, iter_b, iter_b) [with iter_a = __gnu_cxx::__normal_iterator >; iter_b = __gnu_cxx::__normal_iterator >; bool self_check = true; int64_t = long long int]’: ./libmaus2/lcs/NP.hpp:116:53: required from ‘int64_t libmaus2::lcs::NP::np(iter_a, iter_a, iter_b, iter_b, bool) [with iter_a = __gnu_cxx::__normal_iterator >; iter_b = __gnu_cxx::__normal_iterator >; int64_t = long long int]’ test/testpairalign.cpp:124:7: required from here ./libmaus2/lcs/NP.hpp:908:46: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘long long int’ [-Wsign-compare] ./libmaus2/lcs/NP.hpp: In instantiation of ‘int64_t libmaus2::lcs::NP::npTemplate(iter_a, iter_a, iter_b, iter_b) [with iter_a = __gnu_cxx::__normal_iterator >; iter_b = __gnu_cxx::__normal_iterator >; bool self_check = false; int64_t = long long int]’: ./libmaus2/lcs/NP.hpp:118:54: required from ‘int64_t libmaus2::lcs::NP::np(iter_a, iter_a, iter_b, iter_b, bool) [with iter_a = __gnu_cxx::__normal_iterator >; iter_b = __gnu_cxx::__normal_iterator >; int64_t = long long int]’ test/testpairalign.cpp:124:7: required from here ./libmaus2/lcs/NP.hpp:908:46: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘long long int’ [-Wsign-compare] In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/parallel/PosixSpinLock.hpp:23, from ./libmaus2/aio/StreamLock.hpp:21, from ./libmaus2/autoarray/GenericAlignedAllocation.hpp:23, from ./libmaus2/autoarray/AutoArray.hpp:26, from ./libmaus2/fastx/CharBuffer.hpp:22, from ./libmaus2/aio/SynchronousFastReaderBase.hpp:24, from ./libmaus2/fastx/FastAReader.hpp:28, from test/testpairalign.cpp:18: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/parallel/PosixSpinLock.hpp:23, from ./libmaus2/aio/StreamLock.hpp:21, from ./libmaus2/autoarray/GenericAlignedAllocation.hpp:23, from ./libmaus2/autoarray/AutoArray.hpp:26, from ./libmaus2/fastx/CharBuffer.hpp:22, from ./libmaus2/aio/SynchronousFastReaderBase.hpp:24, from ./libmaus2/fastx/FastAReader.hpp:28, from test/testpairalign.cpp:18: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In member function ‘uint64_t libmaus2::index::ExternalMemoryIndexGenerator<_data_type, _base_level_log, _inner_level_log>::flush() [with _data_type = libmaus2::dazzler::align::OverlapMeta; unsigned int _base_level_log = 8; unsigned int _inner_level_log = 3]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from ./libmaus2/index/ExternalMemoryIndexGenerator.hpp:26, from ./libmaus2/dazzler/align/OverlapIndexer.hpp:24, from ./libmaus2/dazzler/align/AlignmentWriter.hpp:21, from test/testpairalign.cpp:24: ./libmaus2/index/ExternalMemoryIndexRecord.hpp: In constructor ‘libmaus2::autoarray::AutoArray::AutoArray(uint64_t, bool) [with N = libmaus2::index::ExternalMemoryIndexRecord; libmaus2::autoarray::alloc_type atype = (libmaus2::autoarray::alloc_type)0; erase_type = libmaus2::autoarray::ArrayErase >]’: ./libmaus2/index/ExternalMemoryIndexRecord.hpp:33:10: warning: ‘.libmaus2::index::ExternalMemoryIndexRecord::D’ may be used uninitialized in this function [-Wmaybe-uninitialized] struct ExternalMemoryIndexRecord ^~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testpairalign test/testpairalign-testpairalign.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -ldl -lrt -L/usr/lib/arm-linux-gnueabi -lz libtool: link: arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testpairalign test/testpairalign-testpairalign.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -ldl -lrt -L/usr/lib/arm-linux-gnueabi -lz -fopenmp -pthread arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testsplaytree-testsplaytree.o `test -f 'test/testsplaytree.cpp' || echo './'`test/testsplaytree.cpp In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/parallel/PosixSpinLock.hpp:23, from ./libmaus2/aio/StreamLock.hpp:21, from ./libmaus2/autoarray/GenericAlignedAllocation.hpp:23, from ./libmaus2/autoarray/AutoArray.hpp:26, from ./libmaus2/util/ContainerElementFreeList.hpp:21, from ./libmaus2/util/SplayTree.hpp:23, from test/testsplaytree.cpp:18: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector >::iterator’ {aka ‘__gnu_cxx::__normal_iterator > >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/util/ContainerElementFreeList.hpp:21, from ./libmaus2/util/SplayTree.hpp:23, from test/testsplaytree.cpp:18: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/parallel/PosixSpinLock.hpp:23, from ./libmaus2/aio/StreamLock.hpp:21, from ./libmaus2/autoarray/GenericAlignedAllocation.hpp:23, from ./libmaus2/autoarray/AutoArray.hpp:26, from ./libmaus2/util/ContainerElementFreeList.hpp:21, from ./libmaus2/util/SplayTree.hpp:23, from test/testsplaytree.cpp:18: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In function ‘bool addElement(libmaus2::util::SplayTree&, std::set&, const value_type&) [with value_type = long long unsigned int]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In function ‘bool eraseElement(libmaus2::util::SplayTree&, std::set&, const value_type&) [with value_type = long long unsigned int]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/util/ContainerElementFreeList.hpp:21, from ./libmaus2/util/SplayTree.hpp:23, from test/testsplaytree.cpp:18: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/util/ContainerElementFreeList.hpp:21, from ./libmaus2/util/SplayTree.hpp:23, from test/testsplaytree.cpp:18: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/parallel/PosixSpinLock.hpp:23, from ./libmaus2/aio/StreamLock.hpp:21, from ./libmaus2/autoarray/GenericAlignedAllocation.hpp:23, from ./libmaus2/autoarray/AutoArray.hpp:26, from ./libmaus2/util/ContainerElementFreeList.hpp:21, from ./libmaus2/util/SplayTree.hpp:23, from test/testsplaytree.cpp:18: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In function ‘void test2()’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/util/ContainerElementFreeList.hpp:21, from ./libmaus2/util/SplayTree.hpp:23, from test/testsplaytree.cpp:18: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ test/testsplaytree.cpp:192:1: note: parameter passing for argument of type ‘std::vector >::iterator’ {aka ‘__gnu_cxx::__normal_iterator > >’} changed in GCC 7.1 } ^ /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testsplaytree test/testsplaytree-testsplaytree.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -ldl -lrt -L/usr/lib/arm-linux-gnueabi -lz libtool: link: arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testsplaytree test/testsplaytree-testsplaytree.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -ldl -lrt -L/usr/lib/arm-linux-gnueabi -lz -fopenmp -pthread arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testbwtconstruction-testbwtconstruction.o `test -f 'test/testbwtconstruction.cpp' || echo './'`test/testbwtconstruction.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testbwtconstruction test/testbwtconstruction-testbwtconstruction.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -ldl -lrt -L/usr/lib/arm-linux-gnueabi -lz libtool: link: arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testbwtconstruction test/testbwtconstruction-testbwtconstruction.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -ldl -lrt -L/usr/lib/arm-linux-gnueabi -lz -fopenmp -pthread arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testbwtconstructionfasta-testbwtconstructionfasta.o `test -f 'test/testbwtconstructionfasta.cpp' || echo './'`test/testbwtconstructionfasta.cpp In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/parallel/PosixSpinLock.hpp:23, from ./libmaus2/aio/StreamLock.hpp:21, from ./libmaus2/autoarray/GenericAlignedAllocation.hpp:23, from ./libmaus2/autoarray/AutoArray.hpp:26, from ./libmaus2/aio/ArrayInputStreamBuffer.hpp:24, from ./libmaus2/aio/ArrayInputStream.hpp:22, from test/testbwtconstructionfasta.cpp:18: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector > >’} changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::fastx::DNAIndexMetaDataSequence}; _Tp = libmaus2::fastx::DNAIndexMetaDataSequence; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/parallel/PosixSpinLock.hpp:23, from ./libmaus2/aio/StreamLock.hpp:21, from ./libmaus2/autoarray/GenericAlignedAllocation.hpp:23, from ./libmaus2/autoarray/AutoArray.hpp:26, from ./libmaus2/aio/ArrayInputStreamBuffer.hpp:24, from ./libmaus2/aio/ArrayInputStream.hpp:22, from test/testbwtconstructionfasta.cpp:18: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In static member function ‘static int libmaus2::fastx::FastAToCompact4BigBandBiDir::fastaToCompact4BigBandBiDir(const std::vector >&, std::ostream*, bool, std::__cxx11::string)’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/parallel/PosixSpinLock.hpp:23, from ./libmaus2/aio/StreamLock.hpp:21, from ./libmaus2/autoarray/GenericAlignedAllocation.hpp:23, from ./libmaus2/autoarray/AutoArray.hpp:26, from ./libmaus2/aio/ArrayInputStreamBuffer.hpp:24, from ./libmaus2/aio/ArrayInputStream.hpp:22, from test/testbwtconstructionfasta.cpp:18: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from test/testbwtconstructionfasta.cpp:24: ./libmaus2/fastx/FastAToCompact4BigBandBiDir.hpp:577:4: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 } ^ /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testbwtconstructionfasta test/testbwtconstructionfasta-testbwtconstructionfasta.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -ldl -lrt -L/usr/lib/arm-linux-gnueabi -lz libtool: link: arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testbwtconstructionfasta test/testbwtconstructionfasta-testbwtconstructionfasta.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -ldl -lrt -L/usr/lib/arm-linux-gnueabi -lz -fopenmp -pthread arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testarrayinput-testarrayinput.o `test -f 'test/testarrayinput.cpp' || echo './'`test/testarrayinput.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testarrayinput test/testarrayinput-testarrayinput.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -ldl -lrt -L/usr/lib/arm-linux-gnueabi -lz libtool: link: arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testarrayinput test/testarrayinput-testarrayinput.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -ldl -lrt -L/usr/lib/arm-linux-gnueabi -lz -fopenmp -pthread arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testhugepages-testhugepages.o `test -f 'test/testhugepages.cpp' || echo './'`test/testhugepages.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testhugepages test/testhugepages-testhugepages.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -ldl -lrt -L/usr/lib/arm-linux-gnueabi -lz libtool: link: arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testhugepages test/testhugepages-testhugepages.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -ldl -lrt -L/usr/lib/arm-linux-gnueabi -lz -fopenmp -pthread arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testsymcnt-testsymcnt.o `test -f 'test/testsymcnt.cpp' || echo './'`test/testsymcnt.cpp In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/huffman/IndexWriter.hpp:22, from ./libmaus2/huffman/SymCountEncoder.hpp:23, from test/testsymcnt.cpp:18: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long int&}; _Tp = long long int; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/huffman/IndexWriter.hpp:22, from ./libmaus2/huffman/SymCountEncoder.hpp:23, from test/testsymcnt.cpp:18: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In member function ‘virtual void libmaus2::huffman::HuffmanTreeLeaf::symbolVector(std::vector&) const’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/huffman/IndexWriter.hpp:22, from ./libmaus2/huffman/SymCountEncoder.hpp:23, from test/testsymcnt.cpp:18: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/huffman/IndexWriter.hpp:22, from ./libmaus2/huffman/SymCountEncoder.hpp:23, from test/testsymcnt.cpp:18: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In member function ‘virtual void libmaus2::huffman::HuffmanTreeLeaf::depthVector(std::vector&, uint64_t) const’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/map:60, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/math/numbits.hpp:24, from ./libmaus2/huffman/IndexWriter.hpp:24, from ./libmaus2/huffman/SymCountEncoder.hpp:23, from test/testsymcnt.cpp:18: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = const libmaus2::huffman::HuffmanTreeLeaf*; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = const libmaus2::huffman::HuffmanTreeInnerNode*; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 In file included from /usr/arm-linux-gnueabi/include/c++/8/map:61, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/math/numbits.hpp:24, from ./libmaus2/huffman/IndexWriter.hpp:24, from ./libmaus2/huffman/SymCountEncoder.hpp:23, from test/testsymcnt.cpp:18: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h: In member function ‘virtual void libmaus2::huffman::HuffmanTreeInnerNode::toDot(std::ostream&) const’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/huffman/IndexWriter.hpp:22, from ./libmaus2/huffman/SymCountEncoder.hpp:23, from test/testsymcnt.cpp:18: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::huffman::IndexEntry}; _Tp = libmaus2::huffman::IndexEntry; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {libmaus2::huffman::IndexEntry}; _Tp = libmaus2::huffman::IndexEntry; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testsymcnt test/testsymcnt-testsymcnt.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -ldl -lrt -L/usr/lib/arm-linux-gnueabi -lz libtool: link: arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testsymcnt test/testsymcnt-testsymcnt.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -ldl -lrt -L/usr/lib/arm-linux-gnueabi -lz -fopenmp -pthread arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testgammapd-testgammapd.o `test -f 'test/testgammapd.cpp' || echo './'`test/testgammapd.cpp In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/util/NumberSerialisation.hpp:28, from ./libmaus2/gamma/GammaPDIndexDecoderBase.hpp:22, from ./libmaus2/gamma/GammaPDIndexDecoder.hpp:21, from ./libmaus2/gamma/GammaPDDecoder.hpp:21, from test/testgammapd.cpp:18: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testgammapd test/testgammapd-testgammapd.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -ldl -lrt -L/usr/lib/arm-linux-gnueabi -lz libtool: link: arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testgammapd test/testgammapd-testgammapd.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -ldl -lrt -L/usr/lib/arm-linux-gnueabi -lz -fopenmp -pthread arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testpo-testpo.o `test -f 'test/testpo.cpp' || echo './'`test/testpo.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testpo test/testpo-testpo.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -ldl -lrt -L/usr/lib/arm-linux-gnueabi -lz libtool: link: arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testpo test/testpo-testpo.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -ldl -lrt -L/usr/lib/arm-linux-gnueabi -lz -fopenmp -pthread arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testdnasuffixtrav-testdnasuffixtrav.o `test -f 'test/testdnasuffixtrav.cpp' || echo './'`test/testdnasuffixtrav.cpp In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/parallel/PosixSpinLock.hpp:23, from ./libmaus2/aio/StreamLock.hpp:21, from ./libmaus2/autoarray/GenericAlignedAllocation.hpp:23, from ./libmaus2/autoarray/AutoArray.hpp:26, from ./libmaus2/aio/ArrayInputStreamBuffer.hpp:24, from ./libmaus2/aio/ArrayInputStream.hpp:22, from test/testdnasuffixtrav.cpp:18: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector > >’} changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::fastx::DNAIndexMetaDataSequence}; _Tp = libmaus2::fastx::DNAIndexMetaDataSequence; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/parallel/PosixSpinLock.hpp:23, from ./libmaus2/aio/StreamLock.hpp:21, from ./libmaus2/autoarray/GenericAlignedAllocation.hpp:23, from ./libmaus2/autoarray/AutoArray.hpp:26, from ./libmaus2/aio/ArrayInputStreamBuffer.hpp:24, from ./libmaus2/aio/ArrayInputStream.hpp:22, from test/testdnasuffixtrav.cpp:18: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In static member function ‘static int libmaus2::fastx::FastAToCompact4BigBandBiDir::fastaToCompact4BigBandBiDir(const std::vector >&, std::ostream*, bool, std::__cxx11::string)’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/parallel/PosixSpinLock.hpp:23, from ./libmaus2/aio/StreamLock.hpp:21, from ./libmaus2/autoarray/GenericAlignedAllocation.hpp:23, from ./libmaus2/autoarray/AutoArray.hpp:26, from ./libmaus2/aio/ArrayInputStreamBuffer.hpp:24, from ./libmaus2/aio/ArrayInputStream.hpp:22, from test/testdnasuffixtrav.cpp:18: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from test/testdnasuffixtrav.cpp:24: ./libmaus2/fastx/FastAToCompact4BigBandBiDir.hpp:577:4: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 } ^ In file included from ./libmaus2/aio/ArrayInputStreamBuffer.hpp:24, from ./libmaus2/aio/ArrayInputStream.hpp:22, from test/testdnasuffixtrav.cpp:18: ./libmaus2/autoarray/AutoArray.hpp: In constructor ‘libmaus2::autoarray::AutoArray::AutoArray(uint64_t, bool) [with N = libmaus2::rank::DNARankSuffixTreeNodeEnumeratorQueueElement; libmaus2::autoarray::alloc_type atype = (libmaus2::autoarray::alloc_type)0; erase_type = libmaus2::autoarray::ArrayErase]’: ./libmaus2/autoarray/AutoArray.hpp:1801:5: warning: ‘’ may be used uninitialized in this function [-Wmaybe-uninitialized] array[i] = N(); ^~~~~ /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testdnasuffixtrav test/testdnasuffixtrav-testdnasuffixtrav.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -ldl -lrt -L/usr/lib/arm-linux-gnueabi -lz libtool: link: arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testdnasuffixtrav test/testdnasuffixtrav-testdnasuffixtrav.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -ldl -lrt -L/usr/lib/arm-linux-gnueabi -lz -fopenmp -pthread arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testserialisedsorting-testserialisedsorting.o `test -f 'test/testserialisedsorting.cpp' || echo './'`test/testserialisedsorting.cpp In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/parallel/PosixSpinLock.hpp:23, from ./libmaus2/aio/StreamLock.hpp:21, from ./libmaus2/autoarray/GenericAlignedAllocation.hpp:23, from ./libmaus2/autoarray/AutoArray.hpp:26, from ./libmaus2/aio/BufferedOutput.hpp:23, from ./libmaus2/sorting/MergingReadBack.hpp:27, from ./libmaus2/sorting/SortingBufferedOutputFile.hpp:22, from test/testserialisedsorting.cpp:18: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const Obj&}; _Tp = Obj; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/aio/BufferedOutput.hpp:23, from ./libmaus2/sorting/MergingReadBack.hpp:27, from ./libmaus2/sorting/SortingBufferedOutputFile.hpp:22, from test/testserialisedsorting.cpp:18: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/aio/BufferedOutput.hpp:23, from ./libmaus2/sorting/MergingReadBack.hpp:27, from ./libmaus2/sorting/SortingBufferedOutputFile.hpp:22, from test/testserialisedsorting.cpp:18: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_val >::HeapOrderAdapter>]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >::HeapOrderAdapter>]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/parallel/PosixSpinLock.hpp:23, from ./libmaus2/aio/StreamLock.hpp:21, from ./libmaus2/autoarray/GenericAlignedAllocation.hpp:23, from ./libmaus2/autoarray/AutoArray.hpp:26, from ./libmaus2/aio/BufferedOutput.hpp:23, from ./libmaus2/sorting/MergingReadBack.hpp:27, from ./libmaus2/sorting/SortingBufferedOutputFile.hpp:22, from test/testserialisedsorting.cpp:18: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In constructor ‘libmaus2::sorting::SerialisingMergingReadBack<_data_type, _order_type>::SerialisingMergingReadBack(const string&, const std::vector::BlockDescriptor>&, libmaus2::sorting::SerialisingMergingReadBack<_data_type, _order_type>::order_type&, uint64_t) [with _data_type = Obj; _order_type = std::less]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In static member function ‘static std::vector::BlockDescriptor> libmaus2::sorting::SerialisingMergingReadBack<_data_type, _order_type>::mergeStep(const string&, const std::vector::BlockDescriptor>&, libmaus2::sorting::SerialisingMergingReadBack<_data_type, _order_type>::order_type&, uint64_t, uint64_t) [with _data_type = Obj; _order_type = std::less]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/aio/BufferedOutput.hpp:23, from ./libmaus2/sorting/MergingReadBack.hpp:27, from ./libmaus2/sorting/SortingBufferedOutputFile.hpp:22, from test/testserialisedsorting.cpp:18: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = Obj; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/aio/BufferedOutput.hpp:23, from ./libmaus2/sorting/MergingReadBack.hpp:27, from ./libmaus2/sorting/SortingBufferedOutputFile.hpp:22, from test/testserialisedsorting.cpp:18: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/parallel/PosixSpinLock.hpp:23, from ./libmaus2/aio/StreamLock.hpp:21, from ./libmaus2/autoarray/GenericAlignedAllocation.hpp:23, from ./libmaus2/autoarray/AutoArray.hpp:26, from ./libmaus2/aio/BufferedOutput.hpp:23, from ./libmaus2/sorting/MergingReadBack.hpp:27, from ./libmaus2/sorting/SortingBufferedOutputFile.hpp:22, from test/testserialisedsorting.cpp:18: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::aio::SerialisingSortingBufferedOutput >::BlockDescriptor}; _Tp = libmaus2::aio::SerialisingSortingBufferedOutput >::BlockDescriptor; _Alloc = std::allocator >::BlockDescriptor>]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector >::BlockDescriptor, std::allocator >::BlockDescriptor> >::iterator’ {aka ‘__gnu_cxx::__normal_iterator >::BlockDescriptor*, std::vector >::BlockDescriptor, std::allocator >::BlockDescriptor> > >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::sorting::InPlaceParallelSort::MergeStepRecSerialRequest, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>}; _Tp = libmaus2::sorting::InPlaceParallelSort::MergeStepRecSerialRequest, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>; _Alloc = std::allocator, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort> >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>, std::allocator, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort> > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>*, std::vector, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>, std::allocator, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort> > > >’} changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In static member function ‘static void libmaus2::sorting::InPlaceParallelSort::mergestepRecLevel(iterator, uint64_t, uint64_t, order_type, base_sort&, int, int, std::vector >&, uint64_t) [with iterator = Obj*; order_type = std::less; base_sort = libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>*, std::vector, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>, std::allocator, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort> > > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void libmaus2::aio::SerialisingSortingBufferedOutput<_data_type, _order_type>::writeBuffer() [with _data_type = Obj; _order_type = std::less]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::BlockDescriptor*, std::vector >::BlockDescriptor, std::allocator >::BlockDescriptor> > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/parallel/PosixSpinLock.hpp:23, from ./libmaus2/aio/StreamLock.hpp:21, from ./libmaus2/autoarray/GenericAlignedAllocation.hpp:23, from ./libmaus2/autoarray/AutoArray.hpp:26, from ./libmaus2/aio/BufferedOutput.hpp:23, from ./libmaus2/sorting/MergingReadBack.hpp:27, from ./libmaus2/sorting/SortingBufferedOutputFile.hpp:22, from test/testserialisedsorting.cpp:18: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In function ‘void checkSortingSerialised()’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/aio/BufferedOutput.hpp:23, from ./libmaus2/sorting/MergingReadBack.hpp:27, from ./libmaus2/sorting/SortingBufferedOutputFile.hpp:22, from test/testserialisedsorting.cpp:18: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/parallel/PosixSpinLock.hpp:23, from ./libmaus2/aio/StreamLock.hpp:21, from ./libmaus2/autoarray/GenericAlignedAllocation.hpp:23, from ./libmaus2/autoarray/AutoArray.hpp:26, from ./libmaus2/aio/BufferedOutput.hpp:23, from ./libmaus2/sorting/MergingReadBack.hpp:27, from ./libmaus2/sorting/SortingBufferedOutputFile.hpp:22, from test/testserialisedsorting.cpp:18: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testserialisedsorting test/testserialisedsorting-testserialisedsorting.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -ldl -lrt -L/usr/lib/arm-linux-gnueabi -lz libtool: link: arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testserialisedsorting test/testserialisedsorting-testserialisedsorting.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -ldl -lrt -L/usr/lib/arm-linux-gnueabi -lz -fopenmp -pthread arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testbamnumericalindex-testbamnumericalindex.o `test -f 'test/testbamnumericalindex.cpp' || echo './'`test/testbamnumericalindex.cpp In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from test/testbamnumericalindex.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from ./libmaus2/bambam/BamHeader.hpp:35, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from test/testbamnumericalindex.cpp:19: ./libmaus2/hashing/ConstantStringHash.hpp: In constructor ‘libmaus2::hashing::ConstantStringHash::ConstantStringHash(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]’: ./libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 ConstantStringHash(iterator ita, iterator ite, uint64_t const maxn = 64*1024) ^~~~~~~~~~~~~~~~~~ ./libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from test/testbamnumericalindex.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::lz::BgzfThreadQueueElement&}; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector >::iterator’ {aka ‘__gnu_cxx::__normal_iterator > >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from test/testbamnumericalindex.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Compare = __gnu_cxx::__ops::_Iter_comp_val]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from test/testbamnumericalindex.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In member function ‘void libmaus2::parallel::TerminatableSynchronousHeap<_value_type, _compare>::enque(libmaus2::parallel::TerminatableSynchronousHeap<_value_type, _compare>::value_type) [with _value_type = libmaus2::lz::BgzfThreadQueueElement; _compare = libmaus2::lz::BgzfThreadQueueElementHeapComparator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from test/testbamnumericalindex.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::trie::LinearTrieStateBase}; _Tp = libmaus2::trie::LinearTrieStateBase; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from test/testbamnumericalindex.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from test/testbamnumericalindex.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Compare = __gnu_cxx::__ops::_Iter_comp_val]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from test/testbamnumericalindex.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In member function ‘virtual void* libmaus2::lz::BgzfInflateParallelThread::run()’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from test/testbamnumericalindex.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::ReadGroup&}; _Tp = libmaus2::bambam::ReadGroup; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from test/testbamnumericalindex.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In static member function ‘static std::vector libmaus2::bambam::BamHeader::getReadGroups(const string&)’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from test/testbamnumericalindex.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from test/testbamnumericalindex.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from test/testbamnumericalindex.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In member function ‘void libmaus2::trie::LinearHashTrie<_char_type, _id_type>::fillDepthParent() [with _char_type = char; _id_type = unsigned int]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from test/testbamnumericalindex.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from test/testbamnumericalindex.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘typename libmaus2::trie::LinearHashTrie<_char_type, id_type>::unique_ptr_type libmaus2::trie::Trie<_char_type>::toLinearHashTrie() const [with id_type = unsigned int; _char_type = char]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from test/testbamnumericalindex.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from ./libmaus2/bambam/BamHeader.hpp:35, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from test/testbamnumericalindex.cpp:19: ./libmaus2/hashing/ConstantStringHash.hpp: In member function ‘void libmaus2::bambam::BamHeader::initSetup()’: ./libmaus2/hashing/ConstantStringHash.hpp:86:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 shared_ptr_type s(new this_type(ita,ite,maxn)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from test/testbamnumericalindex.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void libmaus2::bambam::BamHeader::init(stream_type&) [with stream_type = libmaus2::lz::BgzfInflateStream]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testbamnumericalindex test/testbamnumericalindex-testbamnumericalindex.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -ldl -lrt -L/usr/lib/arm-linux-gnueabi -lz libtool: link: arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testbamnumericalindex test/testbamnumericalindex-testbamnumericalindex.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -ldl -lrt -L/usr/lib/arm-linux-gnueabi -lz -fopenmp -pthread arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testnpl-testnpl.o `test -f 'test/testnpl.cpp' || echo './'`test/testnpl.cpp In file included from test/testnpl.cpp:19: ./libmaus2/lcs/NPL.hpp: In instantiation of ‘libmaus2::lcs::NPL::index_type libmaus2::lcs::NPL::np(iter_a, iter_a, iter_b, iter_b, libmaus2::lcs::NPL::index_type) [with iter_a = const unsigned char*; iter_b = const unsigned char*; libmaus2::lcs::NPL::index_type = long long int]’: ./libmaus2/lcs/NPL.hpp:85:23: required from here ./libmaus2/lcs/NPL.hpp:503:46: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘long long int’ [-Wsign-compare] if ( AlignmentTraceContainer::capacity() <= std::min(an,bn)+ed ) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ In file included from ./libmaus2/lcs/NPLinMem.hpp:22, from test/testnpl.cpp:18: ./libmaus2/lcs/NP.hpp: In instantiation of ‘int64_t libmaus2::lcs::NP::npTemplate(iter_a, iter_a, iter_b, iter_b) [with iter_a = const unsigned char*; iter_b = const unsigned char*; bool self_check = true; int64_t = long long int]’: ./libmaus2/lcs/NP.hpp:116:53: required from ‘int64_t libmaus2::lcs::NP::np(iter_a, iter_a, iter_b, iter_b, bool) [with iter_a = const unsigned char*; iter_b = const unsigned char*; int64_t = long long int]’ ./libmaus2/lcs/NP.hpp:104:23: required from here ./libmaus2/lcs/NP.hpp:908:46: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘long long int’ [-Wsign-compare] if ( AlignmentTraceContainer::capacity() <= std::min(an,bn)+ed ) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ ./libmaus2/lcs/NP.hpp: In instantiation of ‘int64_t libmaus2::lcs::NP::npTemplate(iter_a, iter_a, iter_b, iter_b) [with iter_a = const unsigned char*; iter_b = const unsigned char*; bool self_check = false; int64_t = long long int]’: ./libmaus2/lcs/NP.hpp:118:54: required from ‘int64_t libmaus2::lcs::NP::np(iter_a, iter_a, iter_b, iter_b, bool) [with iter_a = const unsigned char*; iter_b = const unsigned char*; int64_t = long long int]’ ./libmaus2/lcs/NP.hpp:104:23: required from here ./libmaus2/lcs/NP.hpp:908:46: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘long long int’ [-Wsign-compare] ./libmaus2/lcs/NP.hpp: In instantiation of ‘int64_t libmaus2::lcs::NP::npTemplate(iter_a, iter_a, iter_b, iter_b) [with iter_a = __gnu_cxx::__normal_iterator >; iter_b = __gnu_cxx::__normal_iterator >; bool self_check = true; int64_t = long long int]’: ./libmaus2/lcs/NP.hpp:116:53: required from ‘int64_t libmaus2::lcs::NP::np(iter_a, iter_a, iter_b, iter_b, bool) [with iter_a = __gnu_cxx::__normal_iterator >; iter_b = __gnu_cxx::__normal_iterator >; int64_t = long long int]’ test/testnpl.cpp:53:4: required from here ./libmaus2/lcs/NP.hpp:908:46: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘long long int’ [-Wsign-compare] ./libmaus2/lcs/NP.hpp: In instantiation of ‘int64_t libmaus2::lcs::NP::npTemplate(iter_a, iter_a, iter_b, iter_b) [with iter_a = __gnu_cxx::__normal_iterator >; iter_b = __gnu_cxx::__normal_iterator >; bool self_check = false; int64_t = long long int]’: ./libmaus2/lcs/NP.hpp:118:54: required from ‘int64_t libmaus2::lcs::NP::np(iter_a, iter_a, iter_b, iter_b, bool) [with iter_a = __gnu_cxx::__normal_iterator >; iter_b = __gnu_cxx::__normal_iterator >; int64_t = long long int]’ test/testnpl.cpp:53:4: required from here ./libmaus2/lcs/NP.hpp:908:46: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘long long int’ [-Wsign-compare] /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testnpl test/testnpl-testnpl.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -ldl -lrt -L/usr/lib/arm-linux-gnueabi -lz libtool: link: arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testnpl test/testnpl-testnpl.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -ldl -lrt -L/usr/lib/arm-linux-gnueabi -lz -fopenmp -pthread arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testkcnt-testkcnt.o `test -f 'test/testkcnt.cpp' || echo './'`test/testkcnt.cpp In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/parallel/PosixSpinLock.hpp:23, from ./libmaus2/aio/StreamLock.hpp:21, from ./libmaus2/autoarray/GenericAlignedAllocation.hpp:23, from ./libmaus2/autoarray/AutoArray.hpp:26, from ./libmaus2/util/LineBuffer.hpp:23, from ./libmaus2/fastx/LineBufferFastAReader.hpp:23, from ./libmaus2/fastx/KmerCount.hpp:23, from test/testkcnt.cpp:18: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/parallel/PosixSpinLock.hpp:23, from ./libmaus2/aio/StreamLock.hpp:21, from ./libmaus2/autoarray/GenericAlignedAllocation.hpp:23, from ./libmaus2/autoarray/AutoArray.hpp:26, from ./libmaus2/util/LineBuffer.hpp:23, from ./libmaus2/fastx/LineBufferFastAReader.hpp:23, from ./libmaus2/fastx/KmerCount.hpp:23, from test/testkcnt.cpp:18: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In member function ‘uint64_t libmaus2::fastx::KmerCount::serialise(std::ostream&) const’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/fastx/acgtnMap.hpp:25, from ./libmaus2/fastx/LineBufferFastAReader.hpp:22, from ./libmaus2/fastx/KmerCount.hpp:23, from test/testkcnt.cpp:18: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_val >::HeapOrderAdapter>]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >::HeapOrderAdapter>]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/parallel/PosixSpinLock.hpp:23, from ./libmaus2/aio/StreamLock.hpp:21, from ./libmaus2/autoarray/GenericAlignedAllocation.hpp:23, from ./libmaus2/autoarray/AutoArray.hpp:26, from ./libmaus2/util/LineBuffer.hpp:23, from ./libmaus2/fastx/LineBufferFastAReader.hpp:23, from ./libmaus2/fastx/KmerCount.hpp:23, from test/testkcnt.cpp:18: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In constructor ‘libmaus2::sorting::SerialisingMergingReadBack<_data_type, _order_type>::SerialisingMergingReadBack(const string&, const std::vector::BlockDescriptor>&, libmaus2::sorting::SerialisingMergingReadBack<_data_type, _order_type>::order_type&, uint64_t) [with _data_type = libmaus2::fastx::KmerCount::KmerObject; _order_type = std::less]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In static member function ‘static std::vector::BlockDescriptor> libmaus2::sorting::SerialisingMergingReadBack<_data_type, _order_type>::mergeStep(const string&, const std::vector::BlockDescriptor>&, libmaus2::sorting::SerialisingMergingReadBack<_data_type, _order_type>::order_type&, uint64_t, uint64_t) [with _data_type = libmaus2::fastx::KmerCount::KmerObject; _order_type = std::less]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::aio::SerialisingSortingBufferedOutput >::BlockDescriptor}; _Tp = libmaus2::aio::SerialisingSortingBufferedOutput >::BlockDescriptor; _Alloc = std::allocator >::BlockDescriptor>]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector >::BlockDescriptor, std::allocator >::BlockDescriptor> >::iterator’ {aka ‘__gnu_cxx::__normal_iterator >::BlockDescriptor*, std::vector >::BlockDescriptor, std::allocator >::BlockDescriptor> > >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::sorting::InPlaceParallelSort::MergeStepRecSerialRequest, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>}; _Tp = libmaus2::sorting::InPlaceParallelSort::MergeStepRecSerialRequest, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>; _Alloc = std::allocator, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort> >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>, std::allocator, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort> > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>*, std::vector, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>, std::allocator, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort> > > >’} changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In static member function ‘static void libmaus2::sorting::InPlaceParallelSort::mergestepRecLevel(iterator, uint64_t, uint64_t, order_type, base_sort&, int, int, std::vector >&, uint64_t) [with iterator = libmaus2::fastx::KmerCount::KmerObject*; order_type = std::less; base_sort = libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>*, std::vector, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>, std::allocator, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort> > > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void libmaus2::aio::SerialisingSortingBufferedOutput<_data_type, _order_type>::writeBuffer() [with _data_type = libmaus2::fastx::KmerCount::KmerObject; _order_type = std::less]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::BlockDescriptor*, std::vector >::BlockDescriptor, std::allocator >::BlockDescriptor> > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In static member function ‘static void libmaus2::sorting::SerialisingSortingBufferedOutputFile<_data_type, _order_type>::reduce(const std::vector >&, const string&, uint64_t, uint64_t, uint64_t, uint64_t) [with _data_type = libmaus2::fastx::KmerCount::KmerObject; _order_type = std::less]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testkcnt test/testkcnt-testkcnt.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -ldl -lrt -L/usr/lib/arm-linux-gnueabi -lz libtool: link: arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testkcnt test/testkcnt-testkcnt.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -ldl -lrt -L/usr/lib/arm-linux-gnueabi -lz -fopenmp -pthread arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testintervaltree-testintervaltree.o `test -f 'test/testintervaltree.cpp' || echo './'`test/testintervaltree.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testintervaltree test/testintervaltree-testintervaltree.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -ldl -lrt -L/usr/lib/arm-linux-gnueabi -lz libtool: link: arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testintervaltree test/testintervaltree-testintervaltree.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -ldl -lrt -L/usr/lib/arm-linux-gnueabi -lz -fopenmp -pthread arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testbamgetrefreg-testbamgetrefreg.o `test -f 'test/testbamgetrefreg.cpp' || echo './'`test/testbamgetrefreg.cpp In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/ArgInfo.hpp:25, from test/testbamgetrefreg.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::ReadGroup&}; _Tp = libmaus2::bambam::ReadGroup; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 In file included from ./libmaus2/bambam/BamHeader.hpp:35, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from test/testbamgetrefreg.cpp:20: ./libmaus2/hashing/ConstantStringHash.hpp: In constructor ‘libmaus2::hashing::ConstantStringHash::ConstantStringHash(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]’: ./libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 ConstantStringHash(iterator ita, iterator ite, uint64_t const maxn = 64*1024) ^~~~~~~~~~~~~~~~~~ ./libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/ArgInfo.hpp:25, from test/testbamgetrefreg.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::trie::LinearTrieStateBase}; _Tp = libmaus2::trie::LinearTrieStateBase; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/util/ArgInfo.hpp:35, from test/testbamgetrefreg.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/ArgInfo.hpp:25, from test/testbamgetrefreg.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In static member function ‘static std::vector libmaus2::bambam::BamHeader::getReadGroups(const string&)’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/util/ArgInfo.hpp:35, from test/testbamgetrefreg.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/util/ArgInfo.hpp:35, from test/testbamgetrefreg.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/ArgInfo.hpp:25, from test/testbamgetrefreg.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘typename libmaus2::trie::LinearHashTrie<_char_type, id_type>::unique_ptr_type libmaus2::trie::Trie<_char_type>::toLinearHashTrie() const [with id_type = unsigned int; _char_type = char]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/ArgInfo.hpp:25, from test/testbamgetrefreg.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/util/ArgInfo.hpp:35, from test/testbamgetrefreg.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ./libmaus2/bambam/BamHeader.hpp:35, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from test/testbamgetrefreg.cpp:20: ./libmaus2/hashing/ConstantStringHash.hpp: In member function ‘void libmaus2::bambam::BamHeader::initSetup()’: ./libmaus2/hashing/ConstantStringHash.hpp:86:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 shared_ptr_type s(new this_type(ita,ite,maxn)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/ArgInfo.hpp:25, from test/testbamgetrefreg.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void libmaus2::bambam::BamHeader::init(stream_type&) [with stream_type = libmaus2::lz::BgzfInflateStream]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testbamgetrefreg test/testbamgetrefreg-testbamgetrefreg.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -ldl -lrt -L/usr/lib/arm-linux-gnueabi -lz libtool: link: arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testbamgetrefreg test/testbamgetrefreg-testbamgetrefreg.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -ldl -lrt -L/usr/lib/arm-linux-gnueabi -lz -fopenmp -pthread arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/teststringgraph-teststringgraph.o `test -f 'test/teststringgraph.cpp' || echo './'`test/teststringgraph.cpp In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/util/NumberSerialisation.hpp:28, from ./libmaus2/dazzler/stringgraph/OverlapNode.hpp:21, from ./libmaus2/dazzler/stringgraph/Edge.hpp:21, from ./libmaus2/dazzler/stringgraph/StringGraph.hpp:21, from test/teststringgraph.cpp:18: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::dazzler::stringgraph::OverlapNode}; _Tp = libmaus2::dazzler::stringgraph::OverlapNode; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::dazzler::db::FastaInfo}; _Tp = libmaus2::dazzler::db::FastaInfo; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector > >’} changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::dazzler::stringgraph::Edge}; _Tp = libmaus2::dazzler::stringgraph::Edge; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector > >’} changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In constructor ‘libmaus2::dazzler::db::DatabaseFile::DatabaseFile(const string&)’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/util/NumberSerialisation.hpp:28, from ./libmaus2/dazzler/stringgraph/OverlapNode.hpp:21, from ./libmaus2/dazzler/stringgraph/Edge.hpp:21, from ./libmaus2/dazzler/stringgraph/StringGraph.hpp:21, from test/teststringgraph.cpp:18: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/dazzler/db/TrackAnno.hpp:22, from ./libmaus2/dazzler/db/Track.hpp:21, from ./libmaus2/dazzler/db/DatabaseFile.hpp:23, from ./libmaus2/dazzler/stringgraph/StringGraph.hpp:22, from test/teststringgraph.cpp:18: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Val_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1880:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 __final_insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1880:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1880:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/dazzler/db/TrackAnno.hpp:22, from ./libmaus2/dazzler/db/Track.hpp:21, from ./libmaus2/dazzler/db/DatabaseFile.hpp:23, from ./libmaus2/dazzler/stringgraph/StringGraph.hpp:22, from test/teststringgraph.cpp:18: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/dazzler/db/TrackAnno.hpp:22, from ./libmaus2/dazzler/db/Track.hpp:21, from ./libmaus2/dazzler/db/DatabaseFile.hpp:23, from ./libmaus2/dazzler/stringgraph/StringGraph.hpp:22, from test/teststringgraph.cpp:18: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/util/NumberSerialisation.hpp:28, from ./libmaus2/dazzler/stringgraph/OverlapNode.hpp:21, from ./libmaus2/dazzler/stringgraph/Edge.hpp:21, from ./libmaus2/dazzler/stringgraph/StringGraph.hpp:21, from test/teststringgraph.cpp:18: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In constructor ‘libmaus2::dazzler::stringgraph::StringGraph::StringGraph(std::istream&)’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/dazzler/db/TrackAnno.hpp:22, from ./libmaus2/dazzler/db/Track.hpp:21, from ./libmaus2/dazzler/db/DatabaseFile.hpp:23, from ./libmaus2/dazzler/stringgraph/StringGraph.hpp:22, from test/teststringgraph.cpp:18: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1971:31: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 std::__final_insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1971:31: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 std::__final_insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o teststringgraph test/teststringgraph-teststringgraph.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -ldl -lrt -L/usr/lib/arm-linux-gnueabi -lz libtool: link: arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/teststringgraph test/teststringgraph-teststringgraph.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -ldl -lrt -L/usr/lib/arm-linux-gnueabi -lz -fopenmp -pthread arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testlognormal-testlognormal.o `test -f 'test/testlognormal.cpp' || echo './'`test/testlognormal.cpp In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/random/LogNormalRandom.hpp:25, from test/testlognormal.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In function ‘int main()’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testlognormal test/testlognormal-testlognormal.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -ldl -lrt -L/usr/lib/arm-linux-gnueabi -lz libtool: link: arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testlognormal test/testlognormal-testlognormal.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -ldl -lrt -L/usr/lib/arm-linux-gnueabi -lz -fopenmp -pthread arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testConstantSumCombinatorics-testConstantSumCombinatorics.o `test -f 'test/testConstantSumCombinatorics.cpp' || echo './'`test/testConstantSumCombinatorics.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testConstantSumCombinatorics test/testConstantSumCombinatorics-testConstantSumCombinatorics.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -ldl -lrt -L/usr/lib/arm-linux-gnueabi -lz libtool: link: arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testConstantSumCombinatorics test/testConstantSumCombinatorics-testConstantSumCombinatorics.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -ldl -lrt -L/usr/lib/arm-linux-gnueabi -lz -fopenmp -pthread arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testmatrix-testmatrix.o `test -f 'test/testmatrix.cpp' || echo './'`test/testmatrix.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testmatrix test/testmatrix-testmatrix.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -ldl -lrt -L/usr/lib/arm-linux-gnueabi -lz libtool: link: arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testmatrix test/testmatrix-testmatrix.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -ldl -lrt -L/usr/lib/arm-linux-gnueabi -lz -fopenmp -pthread arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testlibarchive-testlibarchive.o `test -f 'test/testlibarchive.cpp' || echo './'`test/testlibarchive.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testlibarchive test/testlibarchive-testlibarchive.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -ldl -lrt -L/usr/lib/arm-linux-gnueabi -lz libtool: link: arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testlibarchive test/testlibarchive-testlibarchive.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -ldl -lrt -L/usr/lib/arm-linux-gnueabi -lz -fopenmp -pthread arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testconvpowercache-testconvpowercache.o `test -f 'test/testconvpowercache.cpp' || echo './'`test/testconvpowercache.cpp In file included from test/testconvpowercache.cpp:19: ./libmaus2/math/Convolution.hpp: In static member function ‘static void libmaus2::math::Convolution::fft(iterator, uint64_t, bool) [with iterator = __gnu_cxx::__normal_iterator*, std::vector > >]’: ./libmaus2/math/Convolution.hpp:84:16: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 static void fft(iterator A, uint64_t const n, bool const reverse = false) ^~~ arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/math/libmaus2fftw_a-binom_fftw.o `test -f 'libmaus2/math/binom_fftw.cpp' || echo './'`libmaus2/math/binom_fftw.cpp arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/math/libmaus2fftw_a-Convolution_fftw.o `test -f 'libmaus2/math/Convolution_fftw.cpp' || echo './'`libmaus2/math/Convolution_fftw.cpp rm -f libmaus2fftw.a arm-linux-gnueabi-ar cru libmaus2fftw.a libmaus2/math/libmaus2fftw_a-binom_fftw.o libmaus2/math/libmaus2fftw_a-Convolution_fftw.o arm-linux-gnueabi-ar: `u' modifier ignored since `D' is the default (see `U') arm-linux-gnueabi-ranlib libmaus2fftw.a /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testconvpowercache test/testconvpowercache-testconvpowercache.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la libmaus2fftw.a -ldl -lrt -L/usr/lib/arm-linux-gnueabi -lz libtool: link: arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testconvpowercache test/testconvpowercache-testconvpowercache.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so libmaus2fftw.a -ldl -lrt -L/usr/lib/arm-linux-gnueabi -lz -fopenmp -pthread arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testlassort-testlassort.o `test -f 'test/testlassort.cpp' || echo './'`test/testlassort.cpp In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/util/ArgInfoParseBase.hpp:23, from ./libmaus2/util/ArgParser.hpp:23, from test/testlassort.cpp:18: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {BlockInfo}; _Tp = BlockInfo; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {BlockInfo}; _Tp = BlockInfo; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testlassort test/testlassort-testlassort.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -ldl -lrt -L/usr/lib/arm-linux-gnueabi -lz libtool: link: arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testlassort test/testlassort-testlassort.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -ldl -lrt -L/usr/lib/arm-linux-gnueabi -lz -fopenmp -pthread arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testthreadpoolbgzfdecode-testthreadpoolbgzfdecode.o `test -f 'test/testthreadpoolbgzfdecode.cpp' || echo './'`test/testthreadpoolbgzfdecode.cpp In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from test/testthreadpoolbgzfdecode.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from ./libmaus2/bambam/BamHeader.hpp:35, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from test/testthreadpoolbgzfdecode.cpp:19: ./libmaus2/hashing/ConstantStringHash.hpp: In constructor ‘libmaus2::hashing::ConstantStringHash::ConstantStringHash(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]’: ./libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 ConstantStringHash(iterator ita, iterator ite, uint64_t const maxn = 64*1024) ^~~~~~~~~~~~~~~~~~ ./libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/arm-linux-gnueabi/include/c++/8/map:60, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from test/testthreadpoolbgzfdecode.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/map:61, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from test/testthreadpoolbgzfdecode.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h: In member function ‘virtual void libmaus2::parallel::SimpleThreadPool::setTaskId(uint64_t, uint64_t)’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from test/testthreadpoolbgzfdecode.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::trie::LinearTrieStateBase}; _Tp = libmaus2::trie::LinearTrieStateBase; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from test/testthreadpoolbgzfdecode.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/arm-linux-gnueabi/include/c++/8/map:61, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:27, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from test/testthreadpoolbgzfdecode.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h: In member function ‘virtual void* libmaus2::parallel::SimpleThreadPoolThread::run()’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from test/testthreadpoolbgzfdecode.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::ReadGroup&}; _Tp = libmaus2::bambam::ReadGroup; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from test/testthreadpoolbgzfdecode.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In static member function ‘static std::vector libmaus2::bambam::BamHeader::getReadGroups(const string&)’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from test/testthreadpoolbgzfdecode.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from test/testthreadpoolbgzfdecode.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from test/testthreadpoolbgzfdecode.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In member function ‘void libmaus2::trie::LinearHashTrie<_char_type, _id_type>::fillDepthParent() [with _char_type = char; _id_type = unsigned int]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:24, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from test/testthreadpoolbgzfdecode.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from test/testthreadpoolbgzfdecode.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘typename libmaus2::trie::LinearHashTrie<_char_type, id_type>::unique_ptr_type libmaus2::trie::Trie<_char_type>::toLinearHashTrie() const [with id_type = unsigned int; _char_type = char]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from test/testthreadpoolbgzfdecode.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from ./libmaus2/bambam/BamHeader.hpp:35, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from test/testthreadpoolbgzfdecode.cpp:19: ./libmaus2/hashing/ConstantStringHash.hpp: In member function ‘void libmaus2::bambam::BamHeader::initSetup()’: ./libmaus2/hashing/ConstantStringHash.hpp:86:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 shared_ptr_type s(new this_type(ita,ite,maxn)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from test/testthreadpoolbgzfdecode.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void libmaus2::bambam::BamHeader::init(stream_type&) [with stream_type = libmaus2::lz::BgzfInflateThreadPoolReader]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testthreadpoolbgzfdecode test/testthreadpoolbgzfdecode-testthreadpoolbgzfdecode.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -ldl -lrt -L/usr/lib/arm-linux-gnueabi -lz libtool: link: arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testthreadpoolbgzfdecode test/testthreadpoolbgzfdecode-testthreadpoolbgzfdecode.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -ldl -lrt -L/usr/lib/arm-linux-gnueabi -lz -fopenmp -pthread arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testnnplocalaligner-testnnplocalaligner.o `test -f 'test/testnnplocalaligner.cpp' || echo './'`test/testnnplocalaligner.cpp In file included from ./libmaus2/lcs/NPLinMem.hpp:22, from ./libmaus2/lcs/NNPCor.hpp:24, from ./libmaus2/lcs/NNPCorLocalAligner.hpp:21, from test/testnnplocalaligner.cpp:22: ./libmaus2/lcs/NP.hpp: In instantiation of ‘int64_t libmaus2::lcs::NP::npTemplate(iter_a, iter_a, iter_b, iter_b) [with iter_a = const unsigned char*; iter_b = const unsigned char*; bool self_check = true; int64_t = long long int]’: ./libmaus2/lcs/NP.hpp:116:53: required from ‘int64_t libmaus2::lcs::NP::np(iter_a, iter_a, iter_b, iter_b, bool) [with iter_a = const unsigned char*; iter_b = const unsigned char*; int64_t = long long int]’ ./libmaus2/lcs/NP.hpp:104:23: required from here ./libmaus2/lcs/NP.hpp:908:46: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘long long int’ [-Wsign-compare] if ( AlignmentTraceContainer::capacity() <= std::min(an,bn)+ed ) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ ./libmaus2/lcs/NP.hpp: In instantiation of ‘int64_t libmaus2::lcs::NP::npTemplate(iter_a, iter_a, iter_b, iter_b) [with iter_a = const unsigned char*; iter_b = const unsigned char*; bool self_check = false; int64_t = long long int]’: ./libmaus2/lcs/NP.hpp:118:54: required from ‘int64_t libmaus2::lcs::NP::np(iter_a, iter_a, iter_b, iter_b, bool) [with iter_a = const unsigned char*; iter_b = const unsigned char*; int64_t = long long int]’ ./libmaus2/lcs/NP.hpp:104:23: required from here ./libmaus2/lcs/NP.hpp:908:46: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘long long int’ [-Wsign-compare] In file included from test/testnnplocalaligner.cpp:22: ./libmaus2/lcs/NNPCorLocalAligner.hpp: In instantiation of ‘static libmaus2::lcs::NNPCorLocalAligner::NNPCorLocalAlignerKmer* libmaus2::lcs::NNPCorLocalAligner::extractKmers(iterator, iterator, libmaus2::lcs::NNPCorLocalAligner::NNPCorLocalAlignerKmer*, unsigned int, uint64_t, int64_t, int64_t) [with iterator = __gnu_cxx::__normal_iterator >; uint64_t = long long unsigned int; int64_t = long long int]’: ./libmaus2/lcs/NNPCorLocalAligner.hpp:304:49: required from ‘static void libmaus2::lcs::NNPCorLocalAligner::extractKmers(iterator, iterator, int64_t, int64_t, iterator, iterator, int64_t, int64_t, unsigned int, uint64_t, libmaus2::autoarray::AutoArray&, uint64_t, libmaus2::autoarray::AutoArray >&, uint64_t, libmaus2::lcs::NNPCorLocalAligner::NNPCorLocalAlignerKmerMatches*&) [with iterator = __gnu_cxx::__normal_iterator >; int64_t = long long int; uint64_t = long long unsigned int]’ ./libmaus2/lcs/NNPCorLocalAligner.hpp:865:17: required from ‘std::vector > > libmaus2::lcs::NNPCorLocalAligner::align(iterator, iterator, iterator, iterator, int64_t, int64_t, int64_t, int64_t) [with iterator = __gnu_cxx::__normal_iterator >; int64_t = long long int]’ test/testnnplocalaligner.cpp:122:26: required from here ./libmaus2/lcs/NNPCorLocalAligner.hpp:227:16: warning: comparison of integer expressions of different signedness: ‘__gnu_cxx::__normal_iterator >::difference_type’ {aka ‘int’} and ‘const unsigned int’ [-Wsign-compare] if ( ae-aa >= anak ) ~~~~~~^~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/util/ArgInfoParseBase.hpp:23, from ./libmaus2/util/ArgParser.hpp:23, from test/testnnplocalaligner.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/util/ArgInfoParseBase.hpp:23, from ./libmaus2/util/ArgParser.hpp:23, from test/testnnplocalaligner.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/util/ArgInfoParseBase.hpp:23, from ./libmaus2/util/ArgParser.hpp:23, from test/testnnplocalaligner.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::dazzler::db::FastaInfo}; _Tp = libmaus2::dazzler::db::FastaInfo; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector > >’} changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::pair >&}; _Tp = std::pair >; _Alloc = std::allocator > >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator >*, std::vector > > >’} changed in GCC 7.1 In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/util/ArgInfoParseBase.hpp:23, from ./libmaus2/util/ArgParser.hpp:23, from test/testnnplocalaligner.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In member function ‘uint64_t libmaus2::index::ExternalMemoryIndexGenerator<_data_type, _base_level_log, _inner_level_log>::flush() [with _data_type = libmaus2::dazzler::align::OverlapMeta; unsigned int _base_level_log = 8; unsigned int _inner_level_log = 3]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from ./libmaus2/dazzler/db/TrackAnno.hpp:22, from ./libmaus2/dazzler/db/Track.hpp:21, from ./libmaus2/dazzler/db/DatabaseFile.hpp:23, from test/testnnplocalaligner.cpp:20: ./libmaus2/autoarray/AutoArray.hpp: In constructor ‘libmaus2::autoarray::AutoArray::AutoArray(uint64_t, bool) [with N = libmaus2::lcs::NNPCorLocalAligner::NNPCorLocalAlignerKmerMatches; libmaus2::autoarray::alloc_type atype = (libmaus2::autoarray::alloc_type)0; erase_type = libmaus2::autoarray::ArrayErase]’: ./libmaus2/autoarray/AutoArray.hpp:1801:5: warning: ‘’ may be used uninitialized in this function [-Wmaybe-uninitialized] array[i] = N(); ^~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/util/ArgInfoParseBase.hpp:23, from ./libmaus2/util/ArgParser.hpp:23, from test/testnnplocalaligner.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In constructor ‘libmaus2::dazzler::db::DatabaseFile::DatabaseFile(const string&)’: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from ./libmaus2/index/ExternalMemoryIndexGenerator.hpp:26, from ./libmaus2/dazzler/align/OverlapIndexer.hpp:24, from ./libmaus2/dazzler/align/AlignmentWriter.hpp:21, from test/testnnplocalaligner.cpp:24: ./libmaus2/index/ExternalMemoryIndexRecord.hpp: In constructor ‘libmaus2::autoarray::AutoArray::AutoArray(uint64_t, bool) [with N = libmaus2::index::ExternalMemoryIndexRecord; libmaus2::autoarray::alloc_type atype = (libmaus2::autoarray::alloc_type)0; erase_type = libmaus2::autoarray::ArrayErase >]’: ./libmaus2/index/ExternalMemoryIndexRecord.hpp:33:10: warning: ‘.libmaus2::index::ExternalMemoryIndexRecord::D’ may be used uninitialized in this function [-Wmaybe-uninitialized] struct ExternalMemoryIndexRecord ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ./libmaus2/lcs/NNPCor.hpp:22, from ./libmaus2/lcs/NNPCorLocalAligner.hpp:21, from test/testnnplocalaligner.cpp:22: ./libmaus2/lcs/NNPTraceContainer.hpp: In static member function ‘static uint64_t libmaus2::lcs::NNPTraceContainer::getCommonTracePoints(iterator, iterator, libmaus2::autoarray::AutoArray&, libmaus2::autoarray::AutoArray >&, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >*, std::vector > > >]’: ./libmaus2/lcs/NNPTraceContainer.hpp:1369:20: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >*, std::vector > > >’ changed in GCC 7.1 static uint64_t getCommonTracePoints( ^~~~~~~~~~~~~~~~~~~~ ./libmaus2/lcs/NNPTraceContainer.hpp:1369:20: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >*, std::vector > > >’ changed in GCC 7.1 In file included from test/testnnplocalaligner.cpp:22: ./libmaus2/lcs/NNPCorLocalAligner.hpp: In member function ‘void libmaus2::lcs::NNPCorLocalAligner::filterAlignments(std::vector > >&, iterator, iterator) [with iterator = __gnu_cxx::__normal_iterator >]’: ./libmaus2/lcs/NNPCorLocalAligner.hpp:674:85: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >*, std::vector > > >’ changed in GCC 7.1 uint64_t const ashareo = libmaus2::lcs::NNPTraceContainer::getCommonTracePoints(LLV.begin(),LLV.end(),AT,Ashare,64); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ./libmaus2/util/StackTrace.hpp:32, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/util/ArgInfoParseBase.hpp:23, from ./libmaus2/util/ArgParser.hpp:23, from test/testnnplocalaligner.cpp:19: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In member function ‘std::vector > > libmaus2::lcs::NNPCorLocalAligner::align(iterator, iterator, iterator, iterator, int64_t, int64_t, int64_t, int64_t) [with iterator = __gnu_cxx::__normal_iterator >]’: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >*, std::vector > > >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testnnplocalaligner test/testnnplocalaligner-testnnplocalaligner.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -ldl -lrt -L/usr/lib/arm-linux-gnueabi -lz libtool: link: arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testnnplocalaligner test/testnnplocalaligner-testnnplocalaligner.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -ldl -lrt -L/usr/lib/arm-linux-gnueabi -lz -fopenmp -pthread arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testsuffixtreenum-testsuffixtreenum.o `test -f 'test/testsuffixtreenum.cpp' || echo './'`test/testsuffixtreenum.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testsuffixtreenum test/testsuffixtreenum-testsuffixtreenum.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -ldl -lrt -L/usr/lib/arm-linux-gnueabi -lz libtool: link: arm-linux-gnueabi-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testsuffixtreenum test/testsuffixtreenum-testsuffixtreenum.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -ldl -lrt -L/usr/lib/arm-linux-gnueabi -lz -fopenmp -pthread /bin/bash ../libtool --tag=CC --mode=compile arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/bambam/scram_mod_la-Scram.lo `test -f 'libmaus2/bambam/Scram.c' || echo './'`libmaus2/bambam/Scram.c libtool: compile: arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/Scram.c -fPIC -DPIC -o libmaus2/bambam/.libs/scram_mod_la-Scram.o libtool: compile: arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/Scram.c -o libmaus2/bambam/scram_mod_la-Scram.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=link arm-linux-gnueabi-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -lrt -L/usr/lib/arm-linux-gnueabi -lz -module -shared -export-dynamic -avoid-version -Wl,-z,relro -o libmaus2_scram_mod.la -rpath /usr/lib/arm-linux-gnueabi/libmaus2/2.0.611 libmaus2/bambam/scram_mod_la-Scram.lo -lrt -L/usr/lib/arm-linux-gnueabi -lz -lrt -L/usr/lib/arm-linux-gnueabi -lz libtool: link: arm-linux-gnueabi-gcc -shared -fPIC -DPIC libmaus2/bambam/.libs/scram_mod_la-Scram.o -L/usr/lib/arm-linux-gnueabi -lrt -lz -g -O2 -fstack-protector-strong -pthread -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,relro -pthread -fopenmp -Wl,-soname -Wl,libmaus2_scram_mod.so -o .libs/libmaus2_scram_mod.so libtool: link: ( cd ".libs" && rm -f "libmaus2_scram_mod.la" && ln -s "../libmaus2_scram_mod.la" "libmaus2_scram_mod.la" ) make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>' make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' dh_auto_test -a create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh binary-arch dh_testroot -a dh_prep -a dh_auto_install -a make -j1 install DESTDIR=/<>/debian/tmp AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/<>' Making install in src make[2]: Entering directory '/<>/src' make[3]: Entering directory '/<>/src' /bin/mkdir -p '/<>/debian/tmp/usr/lib/arm-linux-gnueabi' /usr/bin/install -c -m 644 libmaus2digests.a libmaus2digests_sse4.a libmaus2_irods.a libmaus2seqchksumsfactory.a libmaus2fftw.a '/<>/debian/tmp/usr/lib/arm-linux-gnueabi' ( cd '/<>/debian/tmp/usr/lib/arm-linux-gnueabi' && arm-linux-gnueabi-ranlib libmaus2digests.a ) ( cd '/<>/debian/tmp/usr/lib/arm-linux-gnueabi' && arm-linux-gnueabi-ranlib libmaus2digests_sse4.a ) ( cd '/<>/debian/tmp/usr/lib/arm-linux-gnueabi' && arm-linux-gnueabi-ranlib libmaus2_irods.a ) ( cd '/<>/debian/tmp/usr/lib/arm-linux-gnueabi' && arm-linux-gnueabi-ranlib libmaus2seqchksumsfactory.a ) ( cd '/<>/debian/tmp/usr/lib/arm-linux-gnueabi' && arm-linux-gnueabi-ranlib libmaus2fftw.a ) /bin/mkdir -p '/<>/debian/tmp/usr/lib/arm-linux-gnueabi' /bin/bash ../libtool --mode=install /usr/bin/install -c libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la '/<>/debian/tmp/usr/lib/arm-linux-gnueabi' libtool: install: /usr/bin/install -c .libs/libmaus2.so.2.0.611 /<>/debian/tmp/usr/lib/arm-linux-gnueabi/libmaus2.so.2.0.611 libtool: install: (cd /<>/debian/tmp/usr/lib/arm-linux-gnueabi && { ln -s -f libmaus2.so.2.0.611 libmaus2.so.2 || { rm -f libmaus2.so.2 && ln -s libmaus2.so.2.0.611 libmaus2.so.2; }; }) libtool: install: (cd /<>/debian/tmp/usr/lib/arm-linux-gnueabi && { ln -s -f libmaus2.so.2.0.611 libmaus2.so || { rm -f libmaus2.so && ln -s libmaus2.so.2.0.611 libmaus2.so; }; }) libtool: install: /usr/bin/install -c .libs/libmaus2.lai /<>/debian/tmp/usr/lib/arm-linux-gnueabi/libmaus2.la libtool: install: /usr/bin/install -c .libs/libmaus2_simd_align_128.so.2.0.611 /<>/debian/tmp/usr/lib/arm-linux-gnueabi/libmaus2_simd_align_128.so.2.0.611 libtool: install: (cd /<>/debian/tmp/usr/lib/arm-linux-gnueabi && { ln -s -f libmaus2_simd_align_128.so.2.0.611 libmaus2_simd_align_128.so.2 || { rm -f libmaus2_simd_align_128.so.2 && ln -s libmaus2_simd_align_128.so.2.0.611 libmaus2_simd_align_128.so.2; }; }) libtool: install: (cd /<>/debian/tmp/usr/lib/arm-linux-gnueabi && { ln -s -f libmaus2_simd_align_128.so.2.0.611 libmaus2_simd_align_128.so || { rm -f libmaus2_simd_align_128.so && ln -s libmaus2_simd_align_128.so.2.0.611 libmaus2_simd_align_128.so; }; }) libtool: install: /usr/bin/install -c .libs/libmaus2_simd_align_128.lai /<>/debian/tmp/usr/lib/arm-linux-gnueabi/libmaus2_simd_align_128.la libtool: install: /usr/bin/install -c .libs/libmaus2_simd_align_256.so.2.0.611 /<>/debian/tmp/usr/lib/arm-linux-gnueabi/libmaus2_simd_align_256.so.2.0.611 libtool: install: (cd /<>/debian/tmp/usr/lib/arm-linux-gnueabi && { ln -s -f libmaus2_simd_align_256.so.2.0.611 libmaus2_simd_align_256.so.2 || { rm -f libmaus2_simd_align_256.so.2 && ln -s libmaus2_simd_align_256.so.2.0.611 libmaus2_simd_align_256.so.2; }; }) libtool: install: (cd /<>/debian/tmp/usr/lib/arm-linux-gnueabi && { ln -s -f libmaus2_simd_align_256.so.2.0.611 libmaus2_simd_align_256.so || { rm -f libmaus2_simd_align_256.so && ln -s libmaus2_simd_align_256.so.2.0.611 libmaus2_simd_align_256.so; }; }) libtool: install: /usr/bin/install -c .libs/libmaus2_simd_align_256.lai /<>/debian/tmp/usr/lib/arm-linux-gnueabi/libmaus2_simd_align_256.la libtool: install: /usr/bin/install -c .libs/libmaus2.a /<>/debian/tmp/usr/lib/arm-linux-gnueabi/libmaus2.a libtool: install: chmod 644 /<>/debian/tmp/usr/lib/arm-linux-gnueabi/libmaus2.a libtool: install: arm-linux-gnueabi-ranlib /<>/debian/tmp/usr/lib/arm-linux-gnueabi/libmaus2.a libtool: install: /usr/bin/install -c .libs/libmaus2_simd_align_128.a /<>/debian/tmp/usr/lib/arm-linux-gnueabi/libmaus2_simd_align_128.a libtool: install: chmod 644 /<>/debian/tmp/usr/lib/arm-linux-gnueabi/libmaus2_simd_align_128.a libtool: install: arm-linux-gnueabi-ranlib /<>/debian/tmp/usr/lib/arm-linux-gnueabi/libmaus2_simd_align_128.a libtool: install: /usr/bin/install -c .libs/libmaus2_simd_align_256.a /<>/debian/tmp/usr/lib/arm-linux-gnueabi/libmaus2_simd_align_256.a libtool: install: chmod 644 /<>/debian/tmp/usr/lib/arm-linux-gnueabi/libmaus2_simd_align_256.a libtool: install: arm-linux-gnueabi-ranlib /<>/debian/tmp/usr/lib/arm-linux-gnueabi/libmaus2_simd_align_256.a libtool: warning: remember to run 'libtool --finish /usr/lib/arm-linux-gnueabi' /bin/mkdir -p '/<>/debian/tmp/usr/include/libmaus2/' /usr/bin/install -c -m 644 libmaus2/LibMausConfig.hpp '/<>/debian/tmp/usr/include/libmaus2/' /bin/mkdir -p '/<>/debian/tmp/usr/lib/arm-linux-gnueabi/libmaus2/2.0.611' /bin/bash ../libtool --mode=install /usr/bin/install -c libmaus2_scram_mod.la '/<>/debian/tmp/usr/lib/arm-linux-gnueabi/libmaus2/2.0.611' libtool: install: /usr/bin/install -c .libs/libmaus2_scram_mod.so /<>/debian/tmp/usr/lib/arm-linux-gnueabi/libmaus2/2.0.611/libmaus2_scram_mod.so libtool: install: /usr/bin/install -c .libs/libmaus2_scram_mod.lai /<>/debian/tmp/usr/lib/arm-linux-gnueabi/libmaus2/2.0.611/libmaus2_scram_mod.la libtool: warning: remember to run 'libtool --finish /usr/lib/arm-linux-gnueabi/libmaus2/2.0.611' /bin/mkdir -p '/<>/debian/tmp/usr/include/libmaus2/aio' /usr/bin/install -c -m 644 libmaus2/aio/AsynchronousBufferReader.hpp libmaus2/aio/AsynchronousWriter.hpp libmaus2/aio/AsynchronousReader.hpp libmaus2/aio/OutputBuffer8.hpp libmaus2/aio/OutputBuffer84Bit.hpp libmaus2/aio/TerminatedOutputBuffer84Bit.hpp libmaus2/aio/OutputBuffer.hpp libmaus2/aio/OutputFile8Array.hpp libmaus2/aio/GenericInput.hpp libmaus2/aio/MetaOutputFile8Array.hpp libmaus2/aio/SynchronousOutputFile8Array.hpp libmaus2/aio/MetaOutputBuffer8.hpp libmaus2/aio/SynchronousOutputBuffer8.hpp libmaus2/aio/BlockSynchronousOutputBuffer8.hpp libmaus2/aio/GenericOutput.hpp libmaus2/aio/MemInBuffer.hpp libmaus2/aio/MemOutBuffer.hpp libmaus2/aio/BufferedOutput.hpp libmaus2/aio/FileFragment.hpp libmaus2/aio/AsynchronousFastReaderBase.hpp libmaus2/aio/SynchronousFastReaderBase.hpp libmaus2/aio/LimitedGenericInput.hpp libmaus2/aio/SynchronousGenericInput.hpp libmaus2/aio/LimitedSynchronousGenericInput.hpp libmaus2/aio/ReorderConcatGenericInput.hpp libmaus2/aio/GetLength.hpp libmaus2/aio/CompactDecoder4.hpp libmaus2/aio/CompactEncoder4.hpp libmaus2/aio/WriteCompactArray.hpp libmaus2/aio/SynchronousGenericOutput.hpp libmaus2/aio/SynchronousOutputBuffer8Posix.hpp libmaus2/aio/SynchronousGenericOutputPosix.hpp libmaus2/aio/PutOutputIterator.hpp libmaus2/aio/CheckedInputStream.hpp libmaus2/aio/CheckedOutputStream.hpp libmaus2/aio/CircularBuffer.hpp libmaus2/aio/CircularWrapper.hpp libmaus2/aio/IStreamWrapper.hpp libmaus2/aio/CheckedInputStreamAtOffset.hpp libmaus2/aio/Buffer.hpp '/<>/debian/tmp/usr/include/libmaus2/aio' /usr/bin/install -c -m 644 libmaus2/aio/SingleFileFragmentMerge.hpp libmaus2/aio/CheckedInputOutputStream.hpp libmaus2/aio/PosixFdInput.hpp libmaus2/aio/PosixFdInputWrapper.hpp libmaus2/aio/PosixFdInputStream.hpp libmaus2/aio/PosixFdOutputStreamBuffer.hpp libmaus2/aio/PosixFdOutputStream.hpp libmaus2/aio/PosixFdInputStreamBuffer.hpp libmaus2/aio/LinuxStreamingPosixFdOutputStreamBuffer.hpp libmaus2/aio/LinuxStreamingPosixFdOutputStream.hpp libmaus2/aio/IsKnownLocalFileSystem.hpp libmaus2/aio/LineSplittingPosixFdOutputStreamBuffer.hpp libmaus2/aio/LineSplittingPosixFdOutputStream.hpp libmaus2/aio/NamedTemporaryFile.hpp libmaus2/aio/NamedTemporaryFileTypeInfo.hpp libmaus2/aio/NamedTemporaryFileAllocator.hpp libmaus2/aio/InputStreamWrapper.hpp libmaus2/aio/InputStream.hpp libmaus2/aio/InputStreamFactory.hpp libmaus2/aio/PosixFdInputStreamFactory.hpp libmaus2/aio/InputStreamFactoryContainer.hpp libmaus2/aio/OutputStreamWrapper.hpp libmaus2/aio/OutputStream.hpp libmaus2/aio/OutputStreamFactory.hpp libmaus2/aio/OutputStreamFactoryContainer.hpp libmaus2/aio/PosixFdOutputStreamFactory.hpp libmaus2/aio/InputOutputStreamFactoryContainer.hpp libmaus2/aio/InputOutputStreamFactory.hpp libmaus2/aio/InputOutputStream.hpp libmaus2/aio/StdInputOutputStreamFactory.hpp libmaus2/aio/InputOutputStreamWrapper.hpp libmaus2/aio/PosixFdInputOutputStreamBuffer.hpp libmaus2/aio/PosixFdInputOutputStream.hpp libmaus2/aio/PosixFdInputOutputStreamFactory.hpp libmaus2/aio/MemoryFileAdapter.hpp libmaus2/aio/MemoryFileContainer.hpp libmaus2/aio/MemoryFile.hpp libmaus2/aio/MemoryInputOutputStreamBuffer.hpp libmaus2/aio/MemoryInputOutputStreamFactory.hpp libmaus2/aio/MemoryInputOutputStream.hpp '/<>/debian/tmp/usr/include/libmaus2/aio' /usr/bin/install -c -m 644 libmaus2/aio/MemoryInputStreamBuffer.hpp libmaus2/aio/MemoryInputStreamFactory.hpp libmaus2/aio/MemoryInputStream.hpp libmaus2/aio/MemoryOutputStreamBuffer.hpp libmaus2/aio/MemoryOutputStreamFactory.hpp libmaus2/aio/MemoryOutputStream.hpp libmaus2/aio/FileRemoval.hpp libmaus2/aio/InputStreamPointerWrapper.hpp libmaus2/aio/InputStreamInstance.hpp libmaus2/aio/InputStreamInstanceAtOffset.hpp libmaus2/aio/OutputStreamPointerWrapper.hpp libmaus2/aio/OutputStreamInstance.hpp libmaus2/aio/ConcatInputStreamBuffer.hpp libmaus2/aio/ConcatInputStream.hpp libmaus2/aio/SplitWriter.hpp libmaus2/aio/ArrayInputStreamBuffer.hpp libmaus2/aio/ArrayInputStream.hpp libmaus2/aio/ArrayFile.hpp libmaus2/aio/ArrayFileSet.hpp libmaus2/aio/StreamLock.hpp libmaus2/aio/ArrayFileContainer.hpp libmaus2/aio/ArrayInputStreamFactory.hpp libmaus2/aio/PairFileDecoder.hpp libmaus2/aio/SizeMonitorThread.hpp libmaus2/aio/DebugLineOutputStreamBuffer.hpp libmaus2/aio/DebugLineOutputStream.hpp libmaus2/aio/TempFileArray.hpp libmaus2/aio/SerialisedPeeker.hpp libmaus2/aio/GenericPeeker.hpp libmaus2/aio/InputOutputStreamPointerWrapper.hpp libmaus2/aio/InputOutputStreamInstance.hpp libmaus2/aio/InputStreamObject.hpp libmaus2/aio/InputStreamObjectTypeInfo.hpp libmaus2/aio/InputStreamObjectAllocator.hpp libmaus2/aio/CPPInputOutputStreamFactory.hpp libmaus2/aio/OutputStreamInstanceArray.hpp libmaus2/aio/MemoryBackedOutputStreamBuffer.hpp libmaus2/aio/MemoryBackedOutputStream.hpp libmaus2/aio/SkipConcatInputStream.hpp libmaus2/aio/SkipConcatInputStreamBuffer.hpp '/<>/debian/tmp/usr/include/libmaus2/aio' /bin/mkdir -p '/<>/debian/tmp/usr/include/libmaus2/alignment' /usr/bin/install -c -m 644 libmaus2/alignment/KmerTuple.hpp libmaus2/alignment/FactorMatchInfo.hpp libmaus2/alignment/KmerInfo.hpp libmaus2/alignment/FactorMatchInfoPosComparator.hpp libmaus2/alignment/FMIIntervalComparator.hpp libmaus2/alignment/BamLineInfo.hpp libmaus2/alignment/SimpleLocalAligner.hpp '/<>/debian/tmp/usr/include/libmaus2/alignment' /bin/mkdir -p '/<>/debian/tmp/usr/include/libmaus2/autoarray/' /usr/bin/install -c -m 644 libmaus2/autoarray/AutoArray.hpp libmaus2/autoarray/AutoArray2d.hpp libmaus2/autoarray/AutoArrayMultiMap.hpp libmaus2/autoarray/GenericAlignedAllocation.hpp '/<>/debian/tmp/usr/include/libmaus2/autoarray/' /bin/mkdir -p '/<>/debian/tmp/usr/include/libmaus2/bambam/' /usr/bin/install -c -m 644 libmaus2/bambam/DecoderBase.hpp libmaus2/bambam/Chromosome.hpp libmaus2/bambam/BamAlignmentDecoderBase.hpp libmaus2/bambam/BamFormatAuxiliary.hpp libmaus2/bambam/EncoderBase.hpp libmaus2/bambam/BamHeader.hpp libmaus2/bambam/BamAlignment.hpp libmaus2/bambam/BamDecoder.hpp libmaus2/bambam/BamAlignmentComparator.hpp libmaus2/bambam/MergeQueueElement.hpp libmaus2/bambam/CollatingBamDecoder.hpp libmaus2/bambam/CigarOperation.hpp libmaus2/bambam/CigarStringParser.hpp libmaus2/bambam/BamSeqEncodeTable.hpp libmaus2/bambam/BamAlignmentEncoderBase.hpp libmaus2/bambam/BamFlagBase.hpp libmaus2/bambam/BamWriter.hpp libmaus2/bambam/HeaderLine.hpp libmaus2/bambam/ProgramHeaderLineSet.hpp libmaus2/bambam/ReadEnds.hpp libmaus2/bambam/ReadEndsHeapPairComparator.hpp libmaus2/bambam/CompactReadEndsBase.hpp libmaus2/bambam/CompactReadEndsComparator.hpp libmaus2/bambam/SortedFragDecoder.hpp libmaus2/bambam/ReadEndsContainer.hpp libmaus2/bambam/DuplicationMetrics.hpp libmaus2/bambam/OpticalComparator.hpp libmaus2/bambam/BamAlignmentHeapComparator.hpp libmaus2/bambam/BamAlignmentNameComparator.hpp libmaus2/bambam/BamAlignmentNameHIComparator.hpp libmaus2/bambam/BamAlignmentPosComparator.hpp libmaus2/bambam/BamAlignmentTagComparator.hpp libmaus2/bambam/BamEntryContainer.hpp libmaus2/bambam/Scram.h libmaus2/bambam/AlignmentValidity.hpp libmaus2/bambam/ScramDecoder.hpp libmaus2/bambam/ScramEncoder.hpp libmaus2/bambam/SnappyAlignmentMergeInput.hpp libmaus2/bambam/BamAlignmentPrinter.hpp libmaus2/bambam/BamAlignmentSortingCircularHashEntryOverflow.hpp '/<>/debian/tmp/usr/include/libmaus2/bambam/' /usr/bin/install -c -m 644 libmaus2/bambam/CircularHashCollatingBamDecoder.hpp libmaus2/bambam/BamToFastqOutputFileSet.hpp libmaus2/bambam/BamAlignmentDecoder.hpp libmaus2/bambam/CollatingBamDecoderAlignmentInputCallback.hpp libmaus2/bambam/ReadGroup.hpp libmaus2/bambam/BamAuxFilterVector.hpp libmaus2/bambam/BamDefaultAdapters.hpp libmaus2/bambam/AdapterOffsetStrand.hpp libmaus2/bambam/AdapterFilter.hpp libmaus2/bambam/BamIndexBin.hpp libmaus2/bambam/BamIndexLinear.hpp libmaus2/bambam/BamIndexRef.hpp libmaus2/bambam/BamIndex.hpp libmaus2/bambam/BamRange.hpp libmaus2/bambam/BamRangeParser.hpp libmaus2/bambam/BamRangeDecoder.hpp libmaus2/bambam/BamParallelRewrite.hpp libmaus2/bambam/BamAlignmentExpungeCallback.hpp libmaus2/bambam/StrCmpNum.hpp libmaus2/bambam/BamCatHeader.hpp libmaus2/bambam/BamCat.hpp libmaus2/bambam/BamMergeCoordinate.hpp libmaus2/bambam/BamMergeTemplate.hpp libmaus2/bambam/BamMergeQueryName.hpp libmaus2/bambam/BamIndexBinChunk.hpp libmaus2/bambam/BamIndexLinearChunk.hpp libmaus2/bambam/BamIndexGenerator.hpp libmaus2/bambam/BgzfDeflateOutputCallbackBamIndex.hpp libmaus2/bambam/BamAlignmentInputCallbackBam.hpp libmaus2/bambam/BamAlignmentInputCallbackSnappy.hpp libmaus2/bambam/BamHeaderUpdate.hpp libmaus2/bambam/DupSetCallback.hpp libmaus2/bambam/DupSetCallbackSet.hpp libmaus2/bambam/DupSetCallbackStream.hpp libmaus2/bambam/DupSetCallbackVector.hpp libmaus2/bambam/BamAlignmentListNode.hpp libmaus2/bambam/BamAlignmentPairListNode.hpp libmaus2/bambam/ReadEndsListNode.hpp libmaus2/bambam/BamAlignmentFreeList.hpp libmaus2/bambam/BamAlignmentPairFreeList.hpp '/<>/debian/tmp/usr/include/libmaus2/bambam/' /usr/bin/install -c -m 644 libmaus2/bambam/ReadEndsFreeList.hpp libmaus2/bambam/DupMarkBase.hpp libmaus2/bambam/BamAlignmentSnappyInput.hpp libmaus2/bambam/BamAlignmentInputPositionUpdateCallback.hpp libmaus2/bambam/BamAlignmentInputPositionCallbackNull.hpp libmaus2/bambam/BamBlockWriterBase.hpp libmaus2/bambam/BamBlockWriterBaseFactory.hpp libmaus2/bambam/BamAlignmentDecoderInfo.hpp libmaus2/bambam/BamAlignmentDecoderFactory.hpp libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp libmaus2/bambam/BamIndexMetaInfo.hpp libmaus2/bambam/MdStringComputationContext.hpp libmaus2/bambam/BamAlignmentFilter.hpp libmaus2/bambam/BamAlignmentReadGroupFilter.hpp libmaus2/bambam/MdNmRecalculation.hpp libmaus2/bambam/CramRange.hpp libmaus2/bambam/ChromosomeVectorMerge.hpp libmaus2/bambam/BamHeaderLowMem.hpp libmaus2/bambam/GeneFlatFile.hpp libmaus2/bambam/GeneFlatFileEntry.hpp libmaus2/bambam/BamStreamingMarkDuplicatesSupport.hpp libmaus2/bambam/BamStreamingMarkDuplicates.hpp libmaus2/bambam/BamHeaderParserStateBase.hpp libmaus2/bambam/BamHeaderParserState.hpp libmaus2/bambam/BamAlignmentReg2Bin.hpp libmaus2/bambam/SamInfoBase.hpp libmaus2/bambam/SamInfo.hpp libmaus2/bambam/SamPrintableTable.hpp libmaus2/bambam/SamZPrintableTable.hpp libmaus2/bambam/SamDecoder.hpp libmaus2/bambam/SamDecoderWrapper.hpp libmaus2/bambam/BamAlignmentFixedSizeData.hpp libmaus2/bambam/BamAuxSortingBufferEntry.hpp libmaus2/bambam/BamAuxSortingBuffer.hpp libmaus2/bambam/ReadEndsContainerBase.hpp libmaus2/bambam/ReadEndsBlockDecoderBase.hpp libmaus2/bambam/ReadEndsBlockDecoderBaseCollection.hpp libmaus2/bambam/ReadEndsStreamDecoderBase.hpp libmaus2/bambam/ReadEndsStreamDecoderFileBase.hpp libmaus2/bambam/ReadEndsStreamDecoder.hpp '/<>/debian/tmp/usr/include/libmaus2/bambam/' /usr/bin/install -c -m 644 libmaus2/bambam/ReadEndsBasePointerComparator.hpp libmaus2/bambam/ReadEndsBase.hpp libmaus2/bambam/ReadEndsBaseLongHashAttributeComparator.hpp libmaus2/bambam/ReadEndsBaseShortHashAttributeComparator.hpp libmaus2/bambam/ScramInputContainer.hpp libmaus2/bambam/SamEncoder.hpp libmaus2/bambam/ReadEndsBlockDecoderBaseCollectionInfoBase.hpp libmaus2/bambam/ReadEndsBlockDecoderBaseCollectionInfo.hpp libmaus2/bambam/ReadEndsBlockIndexSet.hpp libmaus2/bambam/DupSetCallbackSharedVector.hpp libmaus2/bambam/SamInfoAllocator.hpp libmaus2/bambam/SamInfoTypeInfo.hpp libmaus2/bambam/RgInfo.hpp libmaus2/bambam/SeqChksumPrimeNumbers.hpp libmaus2/bambam/SeqChksumUpdateContext.hpp libmaus2/bambam/ChecksumsInterface.hpp libmaus2/bambam/ChecksumsFactory.hpp libmaus2/bambam/ChecksumsInterfaceAllocator.hpp libmaus2/bambam/ChecksumsInterfaceTypeInfo.hpp libmaus2/bambam/StrCmpNumRecode.hpp libmaus2/bambam/PileVectorElement.hpp libmaus2/bambam/CigarStringReader.hpp libmaus2/bambam/BamAlignmentHashComparator.hpp libmaus2/bambam/CigarRunLengthDecoder.hpp libmaus2/bambam/CigarDecoder.hpp libmaus2/bambam/BamNumericalIndexGenerator.hpp libmaus2/bambam/BamNumericalIndexDecoder.hpp libmaus2/bambam/BamNumericalIndexBase.hpp libmaus2/bambam/BamPeeker.hpp libmaus2/bambam/OptName.hpp libmaus2/bambam/OptNameReader.hpp libmaus2/bambam/BamAccessor.hpp '/<>/debian/tmp/usr/include/libmaus2/bambam/' /bin/mkdir -p '/<>/debian/tmp/usr/include/libmaus2/bambam/parallel/' /usr/bin/install -c -m 644 libmaus2/bambam/parallel/AddPendingCompressBufferWriteInterface.hpp libmaus2/bambam/parallel/AddWritePendingBgzfBlockInterface.hpp libmaus2/bambam/parallel/AlignmentBlockCompressPackage.hpp libmaus2/bambam/parallel/AlignmentBlockCompressPackageReturnInterface.hpp libmaus2/bambam/parallel/AlignmentBufferAllocator.hpp libmaus2/bambam/parallel/AlignmentBufferHeapComparator.hpp libmaus2/bambam/parallel/AlignmentBuffer.hpp libmaus2/bambam/parallel/AlignmentBufferReinsertInterface.hpp libmaus2/bambam/parallel/AlignmentBufferReturnInterface.hpp libmaus2/bambam/parallel/AlignmentBufferTypeInfo.hpp libmaus2/bambam/parallel/AlignmentRewriteBufferAddPendingInterface.hpp libmaus2/bambam/parallel/AlignmentRewriteBufferAllocator.hpp libmaus2/bambam/parallel/AlignmentRewriteBufferCoordinateComparator.hpp libmaus2/bambam/parallel/AlignmentRewriteBuffer.hpp libmaus2/bambam/parallel/AlignmentRewriteBufferPosComparator.hpp libmaus2/bambam/parallel/AlignmentRewriteBufferReinsertForFillingInterface.hpp libmaus2/bambam/parallel/AlignmentRewritePosMergeSortPackage.hpp libmaus2/bambam/parallel/AlignmentRewritePosSortBaseSortPackage.hpp libmaus2/bambam/parallel/AlignmentRewritePosSortContextBaseBlockSortedInterface.hpp libmaus2/bambam/parallel/AlignmentRewritePosSortContext.hpp libmaus2/bambam/parallel/AlignmentRewritePosSortContextMergePackageFinished.hpp libmaus2/bambam/parallel/BaseMergeSortWorkPackageReturnInterface.hpp libmaus2/bambam/parallel/BaseSortWorkPackageDispatcher.hpp libmaus2/bambam/parallel/BaseSortWorkPackageReturnInterface.hpp libmaus2/bambam/parallel/BgzfInflateZStreamBaseGetInterface.hpp libmaus2/bambam/parallel/BgzfInflateZStreamBaseReturnInterface.hpp libmaus2/bambam/parallel/BgzfLinearMemCompressWorkPackageDispatcher.hpp libmaus2/bambam/parallel/BgzfLinearMemCompressWorkPackage.hpp libmaus2/bambam/parallel/BgzfLinearMemCompressWorkPackageReturnInterface.hpp libmaus2/bambam/parallel/BgzfOutputBlockWrittenInterface.hpp libmaus2/bambam/parallel/BlockCompressPackageDispatcher.hpp libmaus2/bambam/parallel/CompressBufferAllocator.hpp libmaus2/bambam/parallel/CompressBufferHeapComparator.hpp libmaus2/bambam/parallel/CompressBuffer.hpp libmaus2/bambam/parallel/CompressionPendingElement.hpp libmaus2/bambam/parallel/ControlInputInfo.hpp libmaus2/bambam/parallel/DecompressBlocksWorkPackageDispatcher.hpp libmaus2/bambam/parallel/DecompressBlocksWorkPackage.hpp libmaus2/bambam/parallel/DecompressBlocksWorkPackageReturnInterface.hpp libmaus2/bambam/parallel/DecompressBlockWorkPackageDispatcher.hpp '/<>/debian/tmp/usr/include/libmaus2/bambam/parallel/' /usr/bin/install -c -m 644 libmaus2/bambam/parallel/DecompressBlockWorkPackage.hpp libmaus2/bambam/parallel/DecompressBlockWorkPackageReturnInterface.hpp libmaus2/bambam/parallel/DecompressedBlockAddPendingInterface.hpp libmaus2/bambam/parallel/DecompressedBlockAllocator.hpp libmaus2/bambam/parallel/DecompressedBlock.hpp libmaus2/bambam/parallel/DecompressedBlockReturnInterface.hpp libmaus2/bambam/parallel/DecompressedBlockTypeInfo.hpp libmaus2/bambam/parallel/DecompressedPendingObjectHeapComparator.hpp libmaus2/bambam/parallel/DecompressedPendingObject.hpp libmaus2/bambam/parallel/FragmentAlignmentBufferAllocator.hpp libmaus2/bambam/parallel/FragmentAlignmentBufferBaseSortPackage.hpp libmaus2/bambam/parallel/FragmentAlignmentBufferFragment.hpp libmaus2/bambam/parallel/FragmentAlignmentBufferHeapComparator.hpp libmaus2/bambam/parallel/FragmentAlignmentBuffer.hpp libmaus2/bambam/parallel/FragmentAlignmentBufferMergeSortPackage.hpp libmaus2/bambam/parallel/FragmentAlignmentBufferPointerTypeSwitchHelper.hpp libmaus2/bambam/parallel/FragmentAlignmentBufferPointerTypeSwitch.hpp libmaus2/bambam/parallel/FragmentAlignmentBufferRewriteFragmentCompleteInterface.hpp libmaus2/bambam/parallel/FragmentAlignmentBufferRewriteWorkPackageDispatcher.hpp libmaus2/bambam/parallel/FragmentAlignmentBufferRewriteWorkPackage.hpp libmaus2/bambam/parallel/FragmentAlignmentBufferRewriteWorkPackageReturnInterface.hpp libmaus2/bambam/parallel/FragmentAlignmentBufferSortContextBaseBlockSortedInterface.hpp libmaus2/bambam/parallel/FragmentAlignmentBufferSortContext.hpp libmaus2/bambam/parallel/FragmentAlignmentBufferSortContextMergePackageFinished.hpp libmaus2/bambam/parallel/FragmentAlignmentBufferSortFinishedInterface.hpp libmaus2/bambam/parallel/FragmentAlignmentBufferTypeInfo.hpp libmaus2/bambam/parallel/GetBgzfDeflateZStreamBaseInterface.hpp libmaus2/bambam/parallel/InputBlockAddPendingInterface.hpp libmaus2/bambam/parallel/InputBlockAllocator.hpp libmaus2/bambam/parallel/InputBlock.hpp libmaus2/bambam/parallel/InputBlockReturnInterface.hpp libmaus2/bambam/parallel/InputBlockTypeInfo.hpp libmaus2/bambam/parallel/InputBlockWorkPackageDispatcher.hpp libmaus2/bambam/parallel/InputBlockWorkPackage.hpp libmaus2/bambam/parallel/InputBlockWorkPackageReturnInterface.hpp libmaus2/bambam/parallel/MergeSortWorkPackageDispatcher.hpp libmaus2/bambam/parallel/ParseBlockWorkPackageDispatcher.hpp libmaus2/bambam/parallel/ParseBlockWorkPackage.hpp libmaus2/bambam/parallel/ParsedBlockAddPendingInterface.hpp libmaus2/bambam/parallel/ParsedBlockStallInterface.hpp '/<>/debian/tmp/usr/include/libmaus2/bambam/parallel/' /usr/bin/install -c -m 644 libmaus2/bambam/parallel/ParseInfoHeaderCompleteCallback.hpp libmaus2/bambam/parallel/ParseInfo.hpp libmaus2/bambam/parallel/ParsePackageReturnInterface.hpp libmaus2/bambam/parallel/PushBackSpace.hpp libmaus2/bambam/parallel/PutBgzfDeflateZStreamBaseInterface.hpp libmaus2/bambam/parallel/RequeReadInterface.hpp libmaus2/bambam/parallel/ReturnBgzfOutputBufferInterface.hpp libmaus2/bambam/parallel/ReturnCompressionPendingElementInterface.hpp libmaus2/bambam/parallel/ReturnRewriteBufferInterface.hpp libmaus2/bambam/parallel/RewriteBlockWorkPackageDispatcher.hpp libmaus2/bambam/parallel/RewriteBlockWorkPackage.hpp libmaus2/bambam/parallel/RewritePackageReturnInterface.hpp libmaus2/bambam/parallel/SmallLinearBlockCompressionPendingObjectFinishedInterface.hpp libmaus2/bambam/parallel/SmallLinearBlockCompressionPendingObjectHeapComparator.hpp libmaus2/bambam/parallel/SmallLinearBlockCompressionPendingObject.hpp libmaus2/bambam/parallel/SortControl.hpp libmaus2/bambam/parallel/SortFinishedInterface.hpp libmaus2/bambam/parallel/ValidateBlockAddPendingInterface.hpp libmaus2/bambam/parallel/ValidateBlockFragmentAddPendingInterface.hpp libmaus2/bambam/parallel/ValidateBlockFragmentPackageReturnInterface.hpp libmaus2/bambam/parallel/ValidateBlockFragmentWorkPackageDispatcher.hpp libmaus2/bambam/parallel/ValidateBlockFragmentWorkPackage.hpp libmaus2/bambam/parallel/ValidateBlockWorkPackageDispatcher.hpp libmaus2/bambam/parallel/ValidateBlockWorkPackage.hpp libmaus2/bambam/parallel/ValidatePackageReturnInterface.hpp libmaus2/bambam/parallel/ValidationFragment.hpp libmaus2/bambam/parallel/WriteBlockWorkPackageDispatcher.hpp libmaus2/bambam/parallel/WriteBlockWorkPackage.hpp libmaus2/bambam/parallel/WriteBlockWorkPackageReturnInterface.hpp libmaus2/bambam/parallel/WritePendingObjectHeapComparator.hpp libmaus2/bambam/parallel/WritePendingObject.hpp libmaus2/bambam/parallel/FragmentAlignmentBufferBaseSortWorkPackageDispatcher.hpp libmaus2/bambam/parallel/FragmentAlignmentBufferReorderWorkPackage.hpp libmaus2/bambam/parallel/FragmentAlignmentBufferReorderWorkPackageDispatcher.hpp libmaus2/bambam/parallel/FragmentAlignmentBufferReorderWorkPackageReturnInterface.hpp libmaus2/bambam/parallel/FragmentAlignmentBufferReorderWorkPackageFinishedInterface.hpp libmaus2/bambam/parallel/FragmentAlignmentBufferNameComparator.hpp libmaus2/bambam/parallel/FragmentAlignmentBufferRewriteUpdateInterval.hpp libmaus2/bambam/parallel/FragmentAlignmentBufferRewriteReadEndsWorkPackageDispatcher.hpp libmaus2/bambam/parallel/FragmentAlignmentBufferRewriteReadEndsWorkPackage.hpp '/<>/debian/tmp/usr/include/libmaus2/bambam/parallel/' /usr/bin/install -c -m 644 libmaus2/bambam/parallel/FragmentAlignmentBufferRewriteReadEndsWorkPackageReturnInterface.hpp libmaus2/bambam/parallel/ReadEndsContainerAllocator.hpp libmaus2/bambam/parallel/ReadEndsContainerTypeInfo.hpp libmaus2/bambam/parallel/ReadEndsContainerFreeListInterface.hpp libmaus2/bambam/parallel/AddDuplicationMetricsInterface.hpp libmaus2/bambam/parallel/PairReadEndsContainerFlushWorkPackage.hpp libmaus2/bambam/parallel/FragReadEndsContainerFlushWorkPackage.hpp libmaus2/bambam/parallel/FragReadEndsContainerFlushWorkPackageReturnInterface.hpp libmaus2/bambam/parallel/FragReadEndsContainerFlushFinishedInterface.hpp libmaus2/bambam/parallel/FragReadEndsContainerFlushWorkPackageDispatcher.hpp libmaus2/bambam/parallel/PairReadEndsContainerFlushWorkPackageReturnInterface.hpp libmaus2/bambam/parallel/PairReadEndsContainerFlushFinishedInterface.hpp libmaus2/bambam/parallel/ReadEndsMergeRequest.hpp libmaus2/bambam/parallel/FragReadEndsMergeWorkPackage.hpp libmaus2/bambam/parallel/FragReadEndsMergeWorkPackageReturnInterface.hpp libmaus2/bambam/parallel/FragReadEndsMergeWorkPackageFinishedInterface.hpp libmaus2/bambam/parallel/FragReadEndsMergeWorkPackageDispatcher.hpp libmaus2/bambam/parallel/PairReadEndsMergeWorkPackage.hpp libmaus2/bambam/parallel/PairReadEndsMergeWorkPackageReturnInterface.hpp libmaus2/bambam/parallel/PairReadEndsMergeWorkPackageFinishedInterface.hpp libmaus2/bambam/parallel/PairReadEndsMergeWorkPackageDispatcher.hpp libmaus2/bambam/parallel/MemInputBlock.hpp libmaus2/bambam/parallel/GenericInputBamParseObject.hpp libmaus2/bambam/parallel/GenericInputBamParseWorkPackageBlockParsedInterface.hpp libmaus2/bambam/parallel/GenericInputBamParseWorkPackageDispatcher.hpp libmaus2/bambam/parallel/GenericInputBamParseWorkPackage.hpp libmaus2/bambam/parallel/GenericInputBamParseWorkPackageReturnInterface.hpp libmaus2/bambam/parallel/GenericInputBase.hpp libmaus2/bambam/parallel/GenericInputBgzfDecompressionWorkPackageDecompressedBlockReturnInterface.hpp libmaus2/bambam/parallel/GenericInputBgzfDecompressionWorkPackageDispatcher.hpp libmaus2/bambam/parallel/GenericInputBgzfDecompressionWorkPackage.hpp libmaus2/bambam/parallel/GenericInputBgzfDecompressionWorkPackageMemInputBlockReturnInterface.hpp libmaus2/bambam/parallel/GenericInputBgzfDecompressionWorkPackageReturnInterface.hpp libmaus2/bambam/parallel/GenericInputBgzfDecompressionWorkSubBlockDecompressionFinishedInterface.hpp libmaus2/bambam/parallel/GenericInputBlock.hpp libmaus2/bambam/parallel/GenericInputControlMergeBlockFinishedInterface.hpp libmaus2/bambam/parallel/GenericInputControlMergeHeapEntry.hpp libmaus2/bambam/parallel/GenericInputControlMergeRequeue.hpp libmaus2/bambam/parallel/GenericInputControlReadAddPendingInterface.hpp libmaus2/bambam/parallel/GenericInputControlReadWorkPackageDispatcher.hpp '/<>/debian/tmp/usr/include/libmaus2/bambam/parallel/' /usr/bin/install -c -m 644 libmaus2/bambam/parallel/GenericInputControlReadWorkPackage.hpp libmaus2/bambam/parallel/GenericInputControlReadWorkPackageReturnInterface.hpp libmaus2/bambam/parallel/GenericInputControlSetMergeStallSlotInterface.hpp libmaus2/bambam/parallel/GenericInputControlStreamInfo.hpp libmaus2/bambam/parallel/GenericInputControlSubBlockPendingHeapComparator.hpp libmaus2/bambam/parallel/GenericInputControlSubBlockPending.hpp libmaus2/bambam/parallel/GenericInputHeapComparator.hpp libmaus2/bambam/parallel/GenericInputMergeDecompressedBlockReturnInterface.hpp libmaus2/bambam/parallel/GenericInputMergeWorkPackageDispatcher.hpp libmaus2/bambam/parallel/GenericInputMergeWorkPackage.hpp libmaus2/bambam/parallel/GenericInputMergeWorkPackageReturnInterface.hpp libmaus2/bambam/parallel/GenericInputMergeWorkRequest.hpp libmaus2/bambam/parallel/GenericInputSingleDataBamParseInfo.hpp libmaus2/bambam/parallel/GenericInputSingleData.hpp libmaus2/bambam/parallel/GenericInputControlBlockCompressionFinishedInterface.hpp libmaus2/bambam/parallel/GenericInputControlBlockCompressionWorkPackage.hpp libmaus2/bambam/parallel/GenericInputControlBlockCompressionWorkPackageDispatcher.hpp libmaus2/bambam/parallel/GenericInputControlBlockCompressionWorkPackageReturnInterface.hpp libmaus2/bambam/parallel/GenericInputControlCompressionPending.hpp libmaus2/bambam/parallel/GenericInputControlCompressionPendingHeapComparator.hpp libmaus2/bambam/parallel/GenericInputControlGetCompressorInterface.hpp libmaus2/bambam/parallel/GenericInputControlPutCompressorInterface.hpp libmaus2/bambam/parallel/GenericInputControlReorderWorkPackage.hpp libmaus2/bambam/parallel/GenericInputControlReorderWorkPackageDispatcher.hpp libmaus2/bambam/parallel/GenericInputControlReorderWorkPackageFinishedInterface.hpp libmaus2/bambam/parallel/GenericInputControlReorderWorkPackageReturnInterface.hpp libmaus2/bambam/parallel/GenericInputControlBlockWritePackageDispatcher.hpp libmaus2/bambam/parallel/GenericInputControlBlockWritePackageBlockWrittenInterface.hpp libmaus2/bambam/parallel/GenericInputControlBlockWritePackageReturnInterface.hpp libmaus2/bambam/parallel/GenericInputControlBlockWritePackage.hpp libmaus2/bambam/parallel/GenericInputBlockSubBlockInfo.hpp libmaus2/bambam/parallel/GenericInputBlockFillResult.hpp libmaus2/bambam/parallel/GenericInputBlockTypeInfo.hpp libmaus2/bambam/parallel/GenericInputBlockAllocator.hpp libmaus2/bambam/parallel/DecompressedBlockHeapComparator.hpp libmaus2/bambam/parallel/FragmentAlignmentBufferBaseSortWorkPackageReturnInterface.hpp libmaus2/bambam/parallel/FragmentAlignmentBufferMergeSortWorkPackage.hpp libmaus2/bambam/parallel/FragmentAlignmentBufferMergeSortWorkPackageDispatcher.hpp libmaus2/bambam/parallel/PairReadEndsContainerFlushWorkPackageDispatcher.hpp libmaus2/bambam/parallel/FragmentAlignmentBufferMergeSortWorkPackageReturnInterface.hpp '/<>/debian/tmp/usr/include/libmaus2/bambam/parallel/' /usr/bin/install -c -m 644 libmaus2/bambam/parallel/FragmentAlignmentBufferPosComparator.hpp libmaus2/bambam/parallel/SamParsePending.hpp libmaus2/bambam/parallel/SamParsePendingHeapComparator.hpp libmaus2/bambam/parallel/SamParseWorkPackage.hpp libmaus2/bambam/parallel/BlockSortControlBase.hpp libmaus2/bambam/parallel/SamParsePutSamInfoInterface.hpp libmaus2/bambam/parallel/SamParseGetSamInfoInterface.hpp libmaus2/bambam/parallel/SamParseFragmentParsedInterface.hpp libmaus2/bambam/parallel/SamParseDecompressedBlockFinishedInterface.hpp libmaus2/bambam/parallel/SamParseWorkPackageReturnInterface.hpp libmaus2/bambam/parallel/SamParseWorkPackageDispatcher.hpp libmaus2/bambam/parallel/BlockSortControl.hpp libmaus2/bambam/parallel/BlockMergeControl.hpp libmaus2/bambam/parallel/GenericInputControlBlocksWritePackage.hpp libmaus2/bambam/parallel/FastQInputDescBase.hpp libmaus2/bambam/parallel/FastqToBamControlInputBlockHeapComparator.hpp libmaus2/bambam/parallel/FastqToBamControlSubReadPending.hpp libmaus2/bambam/parallel/FastqToBamControlSubReadPendingHeapComparator.hpp libmaus2/bambam/parallel/DecompressedBlockReorderHeapComparator.hpp libmaus2/bambam/parallel/FastQInputDesc.hpp libmaus2/bambam/parallel/FastqInputPackage.hpp libmaus2/bambam/parallel/FastqInputPackageReturnInterface.hpp libmaus2/bambam/parallel/FastqInputPackageAddPendingInterface.hpp libmaus2/bambam/parallel/FastqInputPackageDispatcher.hpp libmaus2/bambam/parallel/FastqParsePackage.hpp libmaus2/bambam/parallel/FastqParsePackageReturnInterface.hpp libmaus2/bambam/parallel/FastqParsePackageFinishedInterface.hpp libmaus2/bambam/parallel/FastqParsePackageDispatcher.hpp libmaus2/bambam/parallel/FastqToBamControl.hpp libmaus2/bambam/parallel/GenericInputControlBlocksWritePackageDispatcher.hpp libmaus2/bambam/parallel/GenericInputControlBlocksWritePackageReturnInterface.hpp libmaus2/bambam/parallel/ChecksumsInterfaceGetInterface.hpp libmaus2/bambam/parallel/ChecksumsInterfacePutInterface.hpp libmaus2/bambam/parallel/FileChecksumBlockWorkPackage.hpp libmaus2/bambam/parallel/FileChecksumBlockWorkPackageReturnInterface.hpp libmaus2/bambam/parallel/FileChecksumBlockFinishedInterface.hpp libmaus2/bambam/parallel/FileChecksumBlockWorkPackageDispatcher.hpp libmaus2/bambam/parallel/BamBlockIndexingWorkPackage.hpp libmaus2/bambam/parallel/BamBlockIndexingWorkPackageReturnInterface.hpp libmaus2/bambam/parallel/BamBlockIndexingBlockFinishedInterface.hpp '/<>/debian/tmp/usr/include/libmaus2/bambam/parallel/' /usr/bin/install -c -m 644 libmaus2/bambam/parallel/BamBlockIndexingWorkPackageDispatcher.hpp libmaus2/bambam/parallel/CramInterface.h libmaus2/bambam/parallel/CramOutputBlock.hpp libmaus2/bambam/parallel/CramOutputBlockSizeComparator.hpp libmaus2/bambam/parallel/SamEncoderObject.hpp libmaus2/bambam/parallel/CramOutputBlockWritePackage.hpp libmaus2/bambam/parallel/CramOutputBlockWritePackageReturnInterface.hpp libmaus2/bambam/parallel/CramOutputBlockWritePackageFinishedInterface.hpp libmaus2/bambam/parallel/CramOutputBlockWritePackageDispatcher.hpp libmaus2/bambam/parallel/CramPassPointerObject.hpp libmaus2/bambam/parallel/CramPassPointerObjectComparator.hpp libmaus2/bambam/parallel/CramPassPointerObjectTypeInfo.hpp libmaus2/bambam/parallel/CramPassPointerObjectAllocator.hpp libmaus2/bambam/parallel/ScramCramEncoding.hpp libmaus2/bambam/parallel/CramOutputBlockIdComparator.hpp libmaus2/bambam/parallel/FragmentAlignmentBufferQueryNameComparator.hpp libmaus2/bambam/parallel/CramEncodingWorkPackage.hpp libmaus2/bambam/parallel/SamEncodingWorkPackage.hpp libmaus2/bambam/parallel/SamEncodingWorkPackageWrapper.hpp libmaus2/bambam/parallel/CramOutputBlockChecksumPackage.hpp libmaus2/bambam/parallel/CramOutputBlockChecksumPackageReturnInterface.hpp libmaus2/bambam/parallel/CramOutputBlockChecksumComputedInterface.hpp libmaus2/bambam/parallel/CramOutputBlockChecksumPackageDispatcher.hpp libmaus2/bambam/parallel/CramEncodingWorkPackageReturnInterface.hpp libmaus2/bambam/parallel/SamEncodingWorkPackageWrapperReturnInterface.hpp libmaus2/bambam/parallel/SamEncodingWorkPackageDispatcher.hpp libmaus2/bambam/parallel/BlockMergeControlTypeBase.hpp libmaus2/bambam/parallel/CramEncodingSupportData.hpp libmaus2/bambam/parallel/CramEncodingWorkPackageDispatcher.hpp libmaus2/bambam/parallel/RefIdInterval.hpp '/<>/debian/tmp/usr/include/libmaus2/bambam/parallel/' /bin/mkdir -p '/<>/debian/tmp/usr/include/libmaus2/bitbtree' /usr/bin/install -c -m 644 libmaus2/bitbtree/bitbtree.hpp '/<>/debian/tmp/usr/include/libmaus2/bitbtree' /bin/mkdir -p '/<>/debian/tmp/usr/include/libmaus2/bitio' /usr/bin/install -c -m 644 libmaus2/bitio/BitIO.hpp libmaus2/bitio/BitIOOutput.hpp libmaus2/bitio/CompactArray.hpp libmaus2/bitio/CompactArrayBase.hpp libmaus2/bitio/OutputBuffer.hpp libmaus2/bitio/BitIOInput.hpp libmaus2/bitio/getBits.hpp libmaus2/bitio/ReverseTable.hpp libmaus2/bitio/CompactQueue.hpp libmaus2/bitio/putBits.hpp libmaus2/bitio/SwapWordBitBlock.hpp libmaus2/bitio/swapBitBlocksByReversal.hpp libmaus2/bitio/putBit.hpp libmaus2/bitio/getBit.hpp libmaus2/bitio/readElias.hpp libmaus2/bitio/BitWriter.hpp libmaus2/bitio/CheckedBitWriter.hpp libmaus2/bitio/FastWriteBitWriter.hpp libmaus2/bitio/BitVector.hpp libmaus2/bitio/SignedCompactArray.hpp libmaus2/bitio/BufferIterator.hpp libmaus2/bitio/BitVectorConcat.hpp libmaus2/bitio/CompactSparseArray.hpp libmaus2/bitio/CompactOffsetArray.hpp libmaus2/bitio/CompactOffsetOneArray.hpp libmaus2/bitio/ArrayDecode.hpp libmaus2/bitio/BitStreamFileDecoder.hpp libmaus2/bitio/Clz.hpp libmaus2/bitio/CompactDecoderBuffer.hpp libmaus2/bitio/Ctz.hpp libmaus2/bitio/CompactArrayWriter.hpp libmaus2/bitio/CompactArrayWriterFile.hpp libmaus2/bitio/PacDecoderBuffer.hpp libmaus2/bitio/MarkerFastWriteBitWriter.hpp libmaus2/bitio/BitVectorInput.hpp libmaus2/bitio/BitVectorOutput.hpp libmaus2/bitio/BitSet.hpp '/<>/debian/tmp/usr/include/libmaus2/bitio' /bin/mkdir -p '/<>/debian/tmp/usr/include/libmaus2/bp' /usr/bin/install -c -m 644 libmaus2/bp/BalancedParenthesesBase.hpp libmaus2/bp/BalancedParentheses.hpp '/<>/debian/tmp/usr/include/libmaus2/bp' /bin/mkdir -p '/<>/debian/tmp/usr/include/libmaus2/btree' /usr/bin/install -c -m 644 libmaus2/btree/btree.hpp '/<>/debian/tmp/usr/include/libmaus2/btree' /bin/mkdir -p '/<>/debian/tmp/usr/include/libmaus2/clustering' /usr/bin/install -c -m 644 libmaus2/clustering/HashCreation.hpp libmaus2/clustering/HashCreationBase.hpp libmaus2/clustering/ProduceEdgeRequest.hpp libmaus2/clustering/KmerBase.hpp libmaus2/clustering/KMeans.hpp '/<>/debian/tmp/usr/include/libmaus2/clustering' /bin/mkdir -p '/<>/debian/tmp/usr/include/libmaus2/cumfreq' /usr/bin/install -c -m 644 libmaus2/cumfreq/DynamicCumulativeFrequencies.hpp libmaus2/cumfreq/SlowCumFreq.hpp '/<>/debian/tmp/usr/include/libmaus2/cumfreq' /bin/mkdir -p '/<>/debian/tmp/usr/include/libmaus2/dazzler/align' /usr/bin/install -c -m 644 libmaus2/dazzler/align/AlignmentFile.hpp libmaus2/dazzler/align/Path.hpp libmaus2/dazzler/align/Overlap.hpp libmaus2/dazzler/align/TraceBlock.hpp libmaus2/dazzler/align/TraceBlockVectorCache.hpp libmaus2/dazzler/align/ApproximateRun.hpp libmaus2/dazzler/align/ApproximateRunPartContainer.hpp libmaus2/dazzler/align/SortingOverlapOutputBuffer.hpp libmaus2/dazzler/align/OverlapHeapComparator.hpp libmaus2/dazzler/align/SortingOverlapBlockInput.hpp libmaus2/dazzler/align/SortingOverlapOutputBufferMerger.hpp libmaus2/dazzler/align/AlignmentSplitWriter.hpp libmaus2/dazzler/align/OverlapMeta.hpp libmaus2/dazzler/align/OverlapIndexerBase.hpp libmaus2/dazzler/align/OverlapIndexer.hpp libmaus2/dazzler/align/AlignmentWriter.hpp libmaus2/dazzler/align/OverlapMetaIteratorGet.hpp libmaus2/dazzler/align/AlignmentFileRegion.hpp libmaus2/dazzler/align/CompactRunPartContainer.hpp libmaus2/dazzler/align/Tandem.hpp libmaus2/dazzler/align/TandemVector.hpp libmaus2/dazzler/align/TandemVectorPartContainer.hpp libmaus2/dazzler/align/TracePoint.hpp libmaus2/dazzler/align/OverlapParser.hpp libmaus2/dazzler/align/OverlapData.hpp libmaus2/dazzler/align/SimpleOverlapParser.hpp libmaus2/dazzler/align/SimpleOverlapVectorParser.hpp libmaus2/dazzler/align/LASToBamConverterBase.hpp libmaus2/dazzler/align/RefMapEntry.hpp libmaus2/dazzler/align/RefMapEntryVector.hpp libmaus2/dazzler/align/TrueOverlapStats.hpp libmaus2/dazzler/align/TrueOverlap.hpp libmaus2/dazzler/align/AlignmentWriterArray.hpp libmaus2/dazzler/align/OverlapProperCheck.hpp libmaus2/dazzler/align/DalignerIndexDecoder.hpp libmaus2/dazzler/align/AlignmentFileDecoder.hpp libmaus2/dazzler/align/OverlapHeader.hpp libmaus2/dazzler/align/GraphDecoderContextAllocator.hpp libmaus2/dazzler/align/GraphDecoderContext.hpp libmaus2/dazzler/align/GraphDecoderContextTypeInfo.hpp '/<>/debian/tmp/usr/include/libmaus2/dazzler/align' /usr/bin/install -c -m 644 libmaus2/dazzler/align/GraphDecoder.hpp libmaus2/dazzler/align/GraphEncoder.hpp libmaus2/dazzler/align/OverlapInfo.hpp libmaus2/dazzler/align/OverlapInfoIndexer.hpp libmaus2/dazzler/align/AlignmentFileSymmetryCheck.hpp libmaus2/dazzler/align/AlignmentFileCat.hpp libmaus2/dazzler/align/LasIntervals.hpp libmaus2/dazzler/align/BinIndexDecoder.hpp libmaus2/dazzler/align/LasRangeDecoder.hpp libmaus2/dazzler/align/OverlapDataInterface.hpp libmaus2/dazzler/align/SortOrderCheck.hpp libmaus2/dazzler/align/GraphCheck.hpp libmaus2/dazzler/align/FilterUnique.hpp libmaus2/dazzler/align/LasFileRange.hpp libmaus2/dazzler/align/LasSort2.hpp libmaus2/dazzler/align/OverlapAdapter.hpp libmaus2/dazzler/align/GetTransitiveStrict.hpp libmaus2/dazzler/align/ReadIntervals.hpp libmaus2/dazzler/align/ReadIntervalsVector.hpp libmaus2/dazzler/align/SubIntervalResult.hpp libmaus2/dazzler/align/AlignmentFileConstants.hpp libmaus2/dazzler/align/LasSort2Cascade.hpp libmaus2/dazzler/align/LasMerge2.hpp '/<>/debian/tmp/usr/include/libmaus2/dazzler/align' /bin/mkdir -p '/<>/debian/tmp/usr/include/libmaus2/dazzler/db' /usr/bin/install -c -m 644 libmaus2/dazzler/db/IndexBase.hpp libmaus2/dazzler/db/FastaInfo.hpp libmaus2/dazzler/db/DatabaseFile.hpp libmaus2/dazzler/db/InputBase.hpp libmaus2/dazzler/db/GetByteCounter.hpp libmaus2/dazzler/db/Read.hpp libmaus2/dazzler/db/OutputBase.hpp libmaus2/dazzler/db/TrackAnnoInterface.hpp libmaus2/dazzler/db/TrackAnno.hpp libmaus2/dazzler/db/Track.hpp libmaus2/dazzler/db/InqualContainer.hpp libmaus2/dazzler/db/PartTrackContainer.hpp libmaus2/dazzler/db/ReadLRUContainer.hpp libmaus2/dazzler/db/SatsContainer.hpp libmaus2/dazzler/db/ReadContainer.hpp libmaus2/dazzler/db/StringTrackWriter.hpp libmaus2/dazzler/db/IQVDecoder.hpp libmaus2/dazzler/db/TrackExtra.hpp '/<>/debian/tmp/usr/include/libmaus2/dazzler/db' /bin/mkdir -p '/<>/debian/tmp/usr/include/libmaus2/dazzler/stringgraph' /usr/bin/install -c -m 644 libmaus2/dazzler/stringgraph/Edge.hpp libmaus2/dazzler/stringgraph/OverlapNode.hpp libmaus2/dazzler/stringgraph/StringGraph.hpp libmaus2/dazzler/stringgraph/ContainmentInfo.hpp libmaus2/dazzler/stringgraph/TraversalElement.hpp '/<>/debian/tmp/usr/include/libmaus2/dazzler/stringgraph' /bin/mkdir -p '/<>/debian/tmp/usr/include/libmaus2/deleter' /usr/bin/install -c -m 644 libmaus2/deleter/Deleter.hpp '/<>/debian/tmp/usr/include/libmaus2/deleter' /bin/mkdir -p '/<>/debian/tmp/usr/include/libmaus2/digest' /usr/bin/install -c -m 644 libmaus2/digest/DigestBase.hpp libmaus2/digest/SHA1.hpp libmaus2/digest/SHA2_224.hpp libmaus2/digest/SHA2_256.hpp libmaus2/digest/SHA2_384.hpp libmaus2/digest/SHA2_512.hpp libmaus2/digest/CRC32.hpp libmaus2/digest/Digests.hpp libmaus2/digest/Null.hpp libmaus2/digest/SHA2_256_sse4.hpp libmaus2/digest/sha256.h libmaus2/digest/sha512.h libmaus2/digest/SHA2_512_sse4.hpp libmaus2/digest/CRC32C_sse42.hpp libmaus2/digest/CRC32C_Core.hpp libmaus2/digest/CRC32C.hpp libmaus2/digest/CRC32_Core.hpp libmaus2/digest/DigestInterface.hpp libmaus2/digest/DigestFactory.hpp libmaus2/digest/DigestFactoryContainer.hpp libmaus2/digest/DigestFactory_SHA2_ASM.hpp libmaus2/digest/DigestFactory_CRC32C_SSE42.hpp libmaus2/digest/DigestFactoryInterface.hpp libmaus2/digest/md5.hpp libmaus2/digest/md5.h libmaus2/digest/MurmurHash3_x64_128.hpp libmaus2/digest/SHA3_256.hpp '/<>/debian/tmp/usr/include/libmaus2/digest' /bin/mkdir -p '/<>/debian/tmp/usr/include/libmaus2/eta' /usr/bin/install -c -m 644 libmaus2/eta/LinearETA.hpp '/<>/debian/tmp/usr/include/libmaus2/eta' /bin/mkdir -p '/<>/debian/tmp/usr/include/libmaus2/exception' /usr/bin/install -c -m 644 libmaus2/exception/LibMausException.hpp '/<>/debian/tmp/usr/include/libmaus2/exception' /bin/mkdir -p '/<>/debian/tmp/usr/include/libmaus2/fastx' /usr/bin/install -c -m 644 libmaus2/fastx/CharTermTable.hpp libmaus2/fastx/SpaceTable.hpp libmaus2/fastx/CharBuffer.hpp libmaus2/fastx/Pattern.hpp libmaus2/fastx/acgtnMap.hpp libmaus2/fastx/FastAReader.hpp libmaus2/fastx/PatternBlock.hpp libmaus2/fastx/FastIDBlock.hpp libmaus2/fastx/FastQReader.hpp libmaus2/fastx/FASTQEntry.hpp libmaus2/fastx/isFastQ.hpp libmaus2/fastx/MultiWordDNABitBuffer.hpp libmaus2/fastx/SingleWordDNABitBuffer.hpp libmaus2/fastx/FastInterval.hpp libmaus2/fastx/FastAReaderSplit.hpp libmaus2/fastx/FastQReaderSplit.hpp libmaus2/fastx/ConcatWriter.hpp libmaus2/fastx/FastFirstToLastReverseAdapter.hpp libmaus2/fastx/FastServer.hpp libmaus2/fastx/FastClient.hpp libmaus2/fastx/CompactFastDecoderBase.hpp libmaus2/fastx/CompactFastDecoder.hpp libmaus2/fastx/CompactFastEncoder.hpp libmaus2/fastx/CompactReadContainer.hpp libmaus2/fastx/SocketFastAReader.hpp libmaus2/fastx/SocketFastQReader.hpp libmaus2/fastx/SubSamplingFastReader.hpp libmaus2/fastx/SlashStrip.hpp libmaus2/fastx/FirstWhiteSpaceSlashStrip.hpp libmaus2/fastx/Phred.hpp libmaus2/fastx/FastQElement.hpp libmaus2/fastx/ComputeFastXIntervals.hpp libmaus2/fastx/FqWeightQuantiser.hpp libmaus2/fastx/CompactFastQHeader.hpp libmaus2/fastx/CompactFastQContext.hpp libmaus2/fastx/CompactFastQDecoderBase.hpp libmaus2/fastx/CompactFastQContainerDictionary.hpp libmaus2/fastx/CompactFastQContainer.hpp libmaus2/fastx/CompactFastQContainerDictionaryCreator.hpp libmaus2/fastx/CompactFastQBlockGenerator.hpp '/<>/debian/tmp/usr/include/libmaus2/fastx' /usr/bin/install -c -m 644 libmaus2/fastx/CompactFastQSingleBlockReader.hpp libmaus2/fastx/CompactFastQMultiBlockReader.hpp libmaus2/fastx/CompactFastTerminator.hpp libmaus2/fastx/CompactFastReplace.hpp libmaus2/fastx/QReorder.hpp libmaus2/fastx/StreamFastReaderBase.hpp libmaus2/fastx/StreamFastQReader.hpp libmaus2/fastx/GzipStreamFastQReader.hpp libmaus2/fastx/GzipFileFastQReader.hpp libmaus2/fastx/FastQBgzfWriter.hpp libmaus2/fastx/StreamFastAReader.hpp libmaus2/fastx/FastALineParserLineInfo.hpp libmaus2/fastx/FastADefinedBasesTable.hpp libmaus2/fastx/FastAMapTable.hpp libmaus2/fastx/FastAMatchTable.hpp libmaus2/fastx/FastALineParser.hpp libmaus2/fastx/FastAStreamWrapper.hpp libmaus2/fastx/FastAStream.hpp libmaus2/fastx/FastAStreamSet.hpp libmaus2/fastx/BgzfFastAIndexEntry.hpp libmaus2/fastx/BgzfFastAIndexEntryNameComparator.hpp libmaus2/fastx/BgzfFastAIndexEntryIdComparator.hpp libmaus2/fastx/FastABgzfIndexEntry.hpp libmaus2/fastx/FastABgzfIndex.hpp libmaus2/fastx/FastABgzfDecoder.hpp libmaus2/fastx/FastABgzfDecoderBuffer.hpp libmaus2/fastx/FastAIndexEntry.hpp libmaus2/fastx/FastAIndex.hpp libmaus2/fastx/FastAInfo.hpp libmaus2/fastx/FastATwoBitTable.hpp libmaus2/fastx/FastABPConstants.hpp libmaus2/fastx/FastABPGenerator.hpp libmaus2/fastx/FastaBPSequenceDecoder.hpp libmaus2/fastx/FastaBPDecoder.hpp libmaus2/fastx/NameInfoBase.hpp libmaus2/fastx/NameInfo.hpp libmaus2/fastx/RefPathToken.hpp libmaus2/fastx/RefPathTokenVector.hpp libmaus2/fastx/RefPathTokenVectorSequence.hpp libmaus2/fastx/RefPathLookup.hpp '/<>/debian/tmp/usr/include/libmaus2/fastx' /usr/bin/install -c -m 644 libmaus2/fastx/DNAIndexMetaDataSequence.hpp libmaus2/fastx/DNAIndexMetaData.hpp libmaus2/fastx/DNAIndexMetaDataBigBand.hpp libmaus2/fastx/DNAIndexMetaDataBigBandBiDir.hpp libmaus2/fastx/CoordinateCache.hpp libmaus2/fastx/LineBufferFastAReader.hpp libmaus2/fastx/FastAToCompact4BigBandBiDir.hpp libmaus2/fastx/FastAToCompact4BigBand.hpp libmaus2/fastx/FastAIndexGenerator.hpp libmaus2/fastx/CoordinateCacheBiDir.hpp libmaus2/fastx/KmerFreqInWindowStats.hpp libmaus2/fastx/ReadContainer.hpp libmaus2/fastx/KmerRepeatDetector.hpp libmaus2/fastx/FastaPeeker.hpp libmaus2/fastx/KmerCount.hpp '/<>/debian/tmp/usr/include/libmaus2/fastx' /bin/mkdir -p '/<>/debian/tmp/usr/include/libmaus2/fm' /usr/bin/install -c -m 644 libmaus2/fm/FM.hpp libmaus2/fm/SampledSA.hpp libmaus2/fm/SampledISA.hpp libmaus2/fm/MausFmToBwaConversion.hpp libmaus2/fm/BidirectionalIndexInterval.hpp libmaus2/fm/BidirectionalIndexIntervalSymbol.hpp libmaus2/fm/DictionaryInfo.hpp libmaus2/fm/DictionaryInfoImpCompactHuffmanWaveletTree.hpp libmaus2/fm/BidirectionalDnaIndexTemplate.hpp libmaus2/fm/KmerCache.hpp libmaus2/fm/FA4CompactSampledSuffixArray.hpp libmaus2/fm/BiIndex.hpp '/<>/debian/tmp/usr/include/libmaus2/fm' /bin/mkdir -p '/<>/debian/tmp/usr/include/libmaus2/gamma/' /usr/bin/install -c -m 644 libmaus2/gamma/GammaEncoder.hpp libmaus2/gamma/GammaDecoder.hpp libmaus2/gamma/GammaGapEncoder.hpp libmaus2/gamma/GammaGapDecoder.hpp libmaus2/gamma/GammaRLDecoder.hpp libmaus2/gamma/GammaRLEncoder.hpp libmaus2/gamma/SparseGammaGapEncoder.hpp libmaus2/gamma/SparseGammaGapDecoder.hpp libmaus2/gamma/SparseGammaGapMerge.hpp libmaus2/gamma/SparseGammaGapFile.hpp libmaus2/gamma/SparseGammaGapMultiFile.hpp libmaus2/gamma/SparseGammaGapFileSet.hpp libmaus2/gamma/SparseGammaGapFileLevelSet.hpp libmaus2/gamma/SparseGammaGapFileIndexDecoderEntry.hpp libmaus2/gamma/SparseGammaGapFileIndexDecoder.hpp libmaus2/gamma/SparseGammaGapFileIndexMultiDecoder.hpp libmaus2/gamma/SparseGammaGapConcatDecoder.hpp libmaus2/gamma/SparseGammaGapMultiFileSet.hpp libmaus2/gamma/SparseGammaGapMultiFileLevelSet.hpp libmaus2/gamma/SparseGammaGapBlockEncoder.hpp libmaus2/gamma/GammaDifferenceEncoder.hpp libmaus2/gamma/GammaDifferenceDecoder.hpp libmaus2/gamma/GammaDifferenceMerge.hpp libmaus2/gamma/GammaDifferenceOutputBuffer.hpp libmaus2/gamma/GammaEncoderBase.hpp libmaus2/gamma/SimpleGammaEncoderData.hpp libmaus2/gamma/SimpleGammaEncoder.hpp libmaus2/gamma/GammaDecoderBase.hpp libmaus2/gamma/SimpleGammaDecoderData.hpp libmaus2/gamma/SimpleGammaDecoder.hpp libmaus2/gamma/SimpleGammaEncoderArray.hpp libmaus2/gamma/GammaPartitionEncoder.hpp libmaus2/gamma/GammaIntervalEncoder.hpp libmaus2/gamma/GammaPartitionDecoder.hpp libmaus2/gamma/GammaIntervalDecoder.hpp libmaus2/gamma/GammaPDEncoder.hpp libmaus2/gamma/GammaPDDecoder.hpp libmaus2/gamma/GammaPDIndexDecoderBase.hpp libmaus2/gamma/GammaPDIndexDecoder.hpp libmaus2/gamma/Interval.hpp '/<>/debian/tmp/usr/include/libmaus2/gamma/' /usr/bin/install -c -m 644 libmaus2/gamma/FlaggedInterval.hpp libmaus2/gamma/GammaFlaggedPartitionDecoder.hpp libmaus2/gamma/GammaFlaggedPartitionEncoder.hpp libmaus2/gamma/GammaFlaggedIntervalDecoder.hpp libmaus2/gamma/GammaFlaggedIntervalEncoder.hpp '/<>/debian/tmp/usr/include/libmaus2/gamma/' /bin/mkdir -p '/<>/debian/tmp/usr/include/libmaus2/geometry' /usr/bin/install -c -m 644 libmaus2/geometry/RangeSet.hpp libmaus2/geometry/IntervalTree.hpp '/<>/debian/tmp/usr/include/libmaus2/geometry' /bin/mkdir -p '/<>/debian/tmp/usr/include/libmaus2/graph' /usr/bin/install -c -m 644 libmaus2/graph/TripleEdge.hpp libmaus2/graph/TripleEdgeInput.hpp libmaus2/graph/TripleEdgeOutput.hpp libmaus2/graph/TripleEdgeOutputMerge.hpp libmaus2/graph/TripleEdgeOperations.hpp libmaus2/graph/TripleEdgeBuffer.hpp libmaus2/graph/TripleEdgeBufferSet.hpp libmaus2/graph/TripleEdgeOutputSet.hpp libmaus2/graph/U64Buffer.hpp libmaus2/graph/TripleIOTest.hpp libmaus2/graph/EdgeList.hpp libmaus2/graph/EdgeBuffer.hpp libmaus2/graph/EdgeListLocalFlush.hpp libmaus2/graph/EdgeListLocalLockedFlush.hpp libmaus2/graph/EdgeListLocked.hpp libmaus2/graph/EdgeBufferLocal.hpp libmaus2/graph/EdgeBufferLocalLocked.hpp libmaus2/graph/EdgeListLockedSet.hpp libmaus2/graph/LocalEdgeSet.hpp libmaus2/graph/TripleEdgeCompact.hpp libmaus2/graph/FilteredGraphTypes.hpp libmaus2/graph/GraphEdge.hpp libmaus2/graph/GraphEdgeBuffer.hpp libmaus2/graph/GraphEdgeBlockBuffer.hpp libmaus2/graph/GraphEdgeHeapComparator.hpp libmaus2/graph/GraphEdgeMerge.hpp libmaus2/graph/StronglyConnectedComponents.hpp libmaus2/graph/IdentityTargetProjector.hpp libmaus2/graph/ReachableVertices.hpp libmaus2/graph/TopologicalSorting.hpp libmaus2/graph/POGraph.hpp '/<>/debian/tmp/usr/include/libmaus2/graph' /bin/mkdir -p '/<>/debian/tmp/usr/include/libmaus2/hashing' /usr/bin/install -c -m 644 libmaus2/hashing/hash.hpp libmaus2/hashing/CircularHash.hpp libmaus2/hashing/ConstantStringHash.hpp libmaus2/hashing/Crc32.hpp libmaus2/hashing/MurmurHash3.h '/<>/debian/tmp/usr/include/libmaus2/hashing' /bin/mkdir -p '/<>/debian/tmp/usr/include/libmaus2/hdf5' /usr/bin/install -c -m 644 libmaus2/hdf5/HDF5MuteErrorHandler.hpp libmaus2/hdf5/HDF5Handle.hpp '/<>/debian/tmp/usr/include/libmaus2/hdf5' /bin/mkdir -p '/<>/debian/tmp/usr/include/libmaus2/huffman' /usr/bin/install -c -m 644 libmaus2/huffman/CompressTable.hpp libmaus2/huffman/DecodeTable.hpp libmaus2/huffman/EncodeTable.hpp libmaus2/huffman/hufEncodeString.hpp libmaus2/huffman/HuffmanBase.hpp libmaus2/huffman/huffman.hpp libmaus2/huffman/HuffmanSorting.hpp libmaus2/huffman/HuffmanTreeInnerNode.hpp libmaus2/huffman/HuffmanTreeLeafComparator.hpp libmaus2/huffman/HuffmanTreeLeaf.hpp libmaus2/huffman/HuffmanTreeNode.hpp libmaus2/huffman/CanonicalEncoder.hpp libmaus2/huffman/RLDecoder.hpp libmaus2/huffman/RLEncoder.hpp libmaus2/huffman/HuffmanEncoderFile.hpp libmaus2/huffman/IndexLoader.hpp libmaus2/huffman/GapDecoder.hpp libmaus2/huffman/GapEncoder.hpp libmaus2/huffman/FileStreamBaseType.hpp libmaus2/huffman/BitInputBuffer.hpp libmaus2/huffman/PairAddSecond.hpp libmaus2/huffman/IndexEntry.hpp libmaus2/huffman/IndexLoaderBase.hpp libmaus2/huffman/RLDecoderIndexBase.hpp libmaus2/huffman/GapDecoderIndexBase.hpp libmaus2/huffman/IndexDecoderDataArray.hpp libmaus2/huffman/HuffmanInputFile.hpp libmaus2/huffman/KvInitResult.hpp libmaus2/huffman/HuffmanTree.hpp libmaus2/huffman/SymCountEncoder.hpp libmaus2/huffman/SymCountDecoder.hpp libmaus2/huffman/SymCount.hpp libmaus2/huffman/IndexWriter.hpp libmaus2/huffman/SymCountRun.hpp libmaus2/huffman/RLInitType.hpp libmaus2/huffman/RLRun.hpp libmaus2/huffman/LFInfo.hpp libmaus2/huffman/LFSupportDecoder.hpp libmaus2/huffman/LFSupportEncoder.hpp libmaus2/huffman/LFSupportBitDecoder.hpp '/<>/debian/tmp/usr/include/libmaus2/huffman' /usr/bin/install -c -m 644 libmaus2/huffman/LFSetBit.hpp libmaus2/huffman/LFSetBitDecoder.hpp libmaus2/huffman/LFSetBitEncoder.hpp libmaus2/huffman/LFValueEncoder.hpp libmaus2/huffman/LFValueDecoder.hpp libmaus2/huffman/LFValue.hpp libmaus2/huffman/LFPhiPairDecoder.hpp libmaus2/huffman/LFPhiPairEncoder.hpp libmaus2/huffman/LFPhiPair.hpp libmaus2/huffman/LFPhiPairLCP.hpp libmaus2/huffman/LFPhiPairLCPDecoder.hpp libmaus2/huffman/LFPhiPairLCPEncoder.hpp libmaus2/huffman/LFRankLCP.hpp libmaus2/huffman/LFRankLCPDecoder.hpp libmaus2/huffman/LFRankLCPEncoder.hpp libmaus2/huffman/SymBit.hpp libmaus2/huffman/SymBitDecoder.hpp libmaus2/huffman/SymBitEncoder.hpp libmaus2/huffman/SymBitRun.hpp libmaus2/huffman/LFRankPos.hpp libmaus2/huffman/LFRankPosEncoder.hpp libmaus2/huffman/LFRankPosDecoder.hpp libmaus2/huffman/LFSymRankPos.hpp libmaus2/huffman/LFSymRankPosDecoder.hpp libmaus2/huffman/LFSymRankPosEncoder.hpp libmaus2/huffman/InputAdapter.hpp libmaus2/huffman/OutputAdapter.hpp '/<>/debian/tmp/usr/include/libmaus2/huffman' /bin/mkdir -p '/<>/debian/tmp/usr/include/libmaus2/index/' /usr/bin/install -c -m 644 libmaus2/index/ExternalMemoryIndexGenerator.hpp libmaus2/index/ExternalMemoryIndexRecord.hpp libmaus2/index/ExternalMemoryIndexDecoder.hpp libmaus2/index/ExternalMemoryIndexDecoderFindLargestSmallerResult.hpp '/<>/debian/tmp/usr/include/libmaus2/index/' /bin/mkdir -p '/<>/debian/tmp/usr/include/libmaus2/irods' /usr/bin/install -c -m 644 libmaus2/irods/IRodsFileBase.hpp libmaus2/irods/IRodsSystem.hpp libmaus2/irods/IRodsCommProvider.hpp libmaus2/irods/IRodsInputStreamBuffer.hpp libmaus2/irods/IRodsInputStream.hpp libmaus2/irods/IRodsInputStreamFactory.hpp '/<>/debian/tmp/usr/include/libmaus2/irods' /bin/mkdir -p '/<>/debian/tmp/usr/include/libmaus2/lcp' /usr/bin/install -c -m 644 libmaus2/lcp/LCP.hpp libmaus2/lcp/OracleLCP.hpp libmaus2/lcp/SuccinctLCP.hpp libmaus2/lcp/WaveletLCPResult.hpp libmaus2/lcp/WaveletLCP.hpp libmaus2/lcp/ComputeSuccinctLCPResult.hpp libmaus2/lcp/PLCPBitDecoder.hpp '/<>/debian/tmp/usr/include/libmaus2/lcp' /bin/mkdir -p '/<>/debian/tmp/usr/include/libmaus2/lcs' /usr/bin/install -c -m 644 libmaus2/lcs/SuffixArrayLCS.hpp libmaus2/lcs/LCSRef.hpp libmaus2/lcs/LCSDynamic.hpp libmaus2/lcs/SuffixPrefix.hpp libmaus2/lcs/OverlapComputation.hpp libmaus2/lcs/LCS.hpp libmaus2/lcs/GenericEditDistance.hpp libmaus2/lcs/EditDistanceResult.hpp libmaus2/lcs/BaseConstants.hpp libmaus2/lcs/PenaltyConstants.hpp libmaus2/lcs/TraceContainer.hpp libmaus2/lcs/GenericAlignmentPrint.hpp libmaus2/lcs/SuffixPrefixResult.hpp libmaus2/lcs/SuffixPrefixAlignmentPrint.hpp libmaus2/lcs/OffsetElement.hpp libmaus2/lcs/HashContainer.hpp libmaus2/lcs/HashContainer2.hpp libmaus2/lcs/DistNodeType.hpp libmaus2/lcs/OverlapComputationBlockRequest.hpp libmaus2/lcs/OverlapOrientation.hpp libmaus2/lcs/OrientationWeightEncoding.hpp libmaus2/lcs/CheckOverlapResult.hpp libmaus2/lcs/CheckOverlapResultIdComparator.hpp libmaus2/lcs/CheckOverlapResultIdHeapComparator.hpp libmaus2/lcs/CheckOverlapResultInput.hpp libmaus2/lcs/CheckOverlapResultInputPushBack.hpp libmaus2/lcs/CheckOverlapResultMergeInput.hpp libmaus2/lcs/CheckOverlapScoreComparatorGreater.hpp libmaus2/lcs/CheckOverlapResultOperations.hpp libmaus2/lcs/HammingOverlapDetection.hpp libmaus2/lcs/AlignmentPrint.hpp libmaus2/lcs/AlignmentTraceContainer.hpp libmaus2/lcs/EditDistance.hpp libmaus2/lcs/BandedEditDistance.hpp libmaus2/lcs/MetaEditDistance.hpp libmaus2/lcs/EditDistanceTraceContainer.hpp libmaus2/lcs/EditDistancePriorityType.hpp libmaus2/lcs/LocalBaseConstants.hpp libmaus2/lcs/LocalPenaltyConstants.hpp libmaus2/lcs/LocalAlignmentTraceContainer.hpp '/<>/debian/tmp/usr/include/libmaus2/lcs' /usr/bin/install -c -m 644 libmaus2/lcs/LocalEditDistanceTraceContainer.hpp libmaus2/lcs/LocalAlignmentPrint.hpp libmaus2/lcs/LocalEditDistance.hpp libmaus2/lcs/LocalEditDistanceResult.hpp libmaus2/lcs/MetaLocalEditDistance.hpp libmaus2/lcs/BandedLocalEditDistance.hpp libmaus2/lcs/ND.hpp libmaus2/lcs/NDextend.hpp libmaus2/lcs/AlignmentStatistics.hpp libmaus2/lcs/NDextendAllPass.hpp libmaus2/lcs/NDextendACGTPass.hpp libmaus2/lcs/NDextend1234Pass.hpp libmaus2/lcs/BitVectorResultCallbackInterface.hpp libmaus2/lcs/BitVector.hpp libmaus2/lcs/SimdX86GlobalAlignmentConstants128.hpp libmaus2/lcs/SimdX86GlobalAlignmentConstants256.hpp libmaus2/lcs/SimdX86GlobalAlignmentTemplate.hpp libmaus2/lcs/SimdX86GlobalAlignmentX128_16_def.hpp libmaus2/lcs/SimdX86GlobalAlignmentX128_16.hpp libmaus2/lcs/SimdX86GlobalAlignmentX128_16_undef.hpp libmaus2/lcs/SimdX86GlobalAlignmentX128_8_def.hpp libmaus2/lcs/SimdX86GlobalAlignmentX128_8.hpp libmaus2/lcs/SimdX86GlobalAlignmentX128_8_undef.hpp libmaus2/lcs/SimdX86GlobalAlignmentY256_16_def.hpp libmaus2/lcs/SimdX86GlobalAlignmentY256_16.hpp libmaus2/lcs/SimdX86GlobalAlignmentY256_16_undef.hpp libmaus2/lcs/SimdX86GlobalAlignmentY256_8_def.hpp libmaus2/lcs/SimdX86GlobalAlignmentY256_8.hpp libmaus2/lcs/SimdX86GlobalAlignmentY256_8_undef.hpp libmaus2/lcs/Aligner.hpp libmaus2/lcs/AlignerFactory.hpp libmaus2/lcs/SimdX86BandedGlobalAlignmentTemplate.hpp libmaus2/lcs/SimdX86BandedGlobalAlignmentX128_16_def.hpp libmaus2/lcs/SimdX86BandedGlobalAlignmentX128_16.hpp libmaus2/lcs/SimdX86BandedGlobalAlignmentX128_16_undef.hpp libmaus2/lcs/SimdX86BandedGlobalAlignmentX128_8_def.hpp libmaus2/lcs/SimdX86BandedGlobalAlignmentX128_8.hpp libmaus2/lcs/SimdX86BandedGlobalAlignmentX128_8_undef.hpp libmaus2/lcs/SimdX86BandedGlobalAlignmentY256_16_def.hpp libmaus2/lcs/SimdX86BandedGlobalAlignmentY256_16.hpp '/<>/debian/tmp/usr/include/libmaus2/lcs' /usr/bin/install -c -m 644 libmaus2/lcs/SimdX86BandedGlobalAlignmentY256_16_undef.hpp libmaus2/lcs/SimdX86BandedGlobalAlignmentY256_8_def.hpp libmaus2/lcs/SimdX86BandedGlobalAlignmentY256_8.hpp libmaus2/lcs/SimdX86BandedGlobalAlignmentY256_8_undef.hpp libmaus2/lcs/BandedAligner.hpp libmaus2/lcs/BandedAlignerFactory.hpp libmaus2/lcs/NP.hpp libmaus2/lcs/NPL.hpp libmaus2/lcs/NNP.hpp libmaus2/lcs/NNPCor.hpp libmaus2/lcs/NNPTraceElement.hpp libmaus2/lcs/NNPTraceContainer.hpp libmaus2/lcs/NNPAlignResult.hpp libmaus2/lcs/DalignerNP.hpp libmaus2/lcs/DalignerLocalAlignment.hpp libmaus2/lcs/FragmentEnvelopeYScore.hpp libmaus2/lcs/FragmentEnvelopeFragment.hpp libmaus2/lcs/FragmentEnvelope.hpp libmaus2/lcs/EnvelopeFragment.hpp libmaus2/lcs/ScoreBandedAligner.hpp libmaus2/lcs/SimdX86BandedGlobalAlignmentScoreTemplate.hpp libmaus2/lcs/SimdX86BandedGlobalAlignmentScoreY256_16.hpp libmaus2/lcs/SimdX86BandedGlobalAlignmentScoreY256_16_def.hpp libmaus2/lcs/SimdX86BandedGlobalAlignmentScoreY256_16_undef.hpp libmaus2/lcs/SimdX86GlobalAlignmentScoreConstants256.hpp libmaus2/lcs/NNPLocalAligner.hpp libmaus2/lcs/NNPCorLocalAligner.hpp libmaus2/lcs/ChainAddQueueElementHeapComparator.hpp libmaus2/lcs/ChainNode.hpp libmaus2/lcs/ChainRemoveQueueElement.hpp libmaus2/lcs/ChainAddQueueElement.hpp libmaus2/lcs/ChainNodeInfo.hpp libmaus2/lcs/ChainSplayTreeNodeComparator.hpp libmaus2/lcs/ChainAlignment.hpp libmaus2/lcs/ChainNodeInfoSet.hpp libmaus2/lcs/ChainSplayTreeNode.hpp libmaus2/lcs/Chain.hpp libmaus2/lcs/ChainRemoveQueueElementComparator.hpp libmaus2/lcs/ChainLeftMostComparator.hpp libmaus2/lcs/SMEMProcessor.hpp '/<>/debian/tmp/usr/include/libmaus2/lcs' /usr/bin/install -c -m 644 libmaus2/lcs/AlignmentOneAgainstManyAVX2.hpp libmaus2/lcs/AlignmentOneAgainstManyInterface.hpp libmaus2/lcs/AlignmentOneAgainstManyGeneric.hpp libmaus2/lcs/AlignmentOneAgainstManyFactory.hpp libmaus2/lcs/NNPCorL.hpp libmaus2/lcs/NPLinMem.hpp libmaus2/lcs/NPNoTrace.hpp libmaus2/lcs/NPLNoTrace.hpp libmaus2/lcs/NPLLinMem.hpp '/<>/debian/tmp/usr/include/libmaus2/lcs' /bin/mkdir -p '/<>/debian/tmp/usr/include/libmaus2/lf' /usr/bin/install -c -m 644 libmaus2/lf/LF.hpp libmaus2/lf/HuffmanLF.hpp libmaus2/lf/LFZero.hpp libmaus2/lf/DArray.hpp libmaus2/lf/ImpCompactHuffmanWaveletLF.hpp libmaus2/lf/LFBase.hpp libmaus2/lf/QuickLF.hpp libmaus2/lf/MultiRankLF.hpp libmaus2/lf/MultiRankCacheLF.hpp libmaus2/lf/ImpCacheLineRankLF.hpp libmaus2/lf/ImpCacheLineRankLFNonZero.hpp libmaus2/lf/ImpHuffmanWaveletLF.hpp libmaus2/lf/ImpWTLF.hpp libmaus2/lf/RLIndexLF.hpp '/<>/debian/tmp/usr/include/libmaus2/lf' /bin/mkdir -p '/<>/debian/tmp/usr/include/libmaus2/lru' /usr/bin/install -c -m 644 libmaus2/lru/LRU.hpp libmaus2/lru/SparseLRU.hpp libmaus2/lru/SparseLRUFileBunch.hpp libmaus2/lru/FileBunchLRU.hpp '/<>/debian/tmp/usr/include/libmaus2/lru' /bin/mkdir -p '/<>/debian/tmp/usr/include/libmaus2/lz/' /usr/bin/install -c -m 644 libmaus2/lz/Inflate.hpp libmaus2/lz/Deflate.hpp libmaus2/lz/GzipHeader.hpp libmaus2/lz/StreamWrapper.hpp libmaus2/lz/GzipSingleStream.hpp libmaus2/lz/GzipStream.hpp libmaus2/lz/GzipStreamWrapper.hpp libmaus2/lz/BufferedGzipStream.hpp libmaus2/lz/StdOstreamSink.hpp libmaus2/lz/IstreamSource.hpp libmaus2/lz/SnappyCompress.hpp libmaus2/lz/BgzfInflate.hpp libmaus2/lz/BgzfInflateWrapper.hpp libmaus2/lz/BgzfInflateStream.hpp libmaus2/lz/BgzfDeflate.hpp libmaus2/lz/BgzfInflateBase.hpp libmaus2/lz/BgzfInflateBlock.hpp libmaus2/lz/BgzfInflateParallel.hpp libmaus2/lz/BgzfInflateParallelWrapper.hpp libmaus2/lz/BgzfInflateParallelStream.hpp libmaus2/lz/BgzfDeflateBase.hpp libmaus2/lz/BgzfInflateBlockIdComparator.hpp libmaus2/lz/BgzfInflateBlockIdInfo.hpp libmaus2/lz/BgzfInflateParallelContext.hpp libmaus2/lz/BgzfInflateParallelThread.hpp libmaus2/lz/BgzfDeflateBlockIdInfo.hpp libmaus2/lz/BgzfDeflateBlockIdComparator.hpp libmaus2/lz/BgzfDeflateParallelContext.hpp libmaus2/lz/BgzfDeflateParallelThread.hpp libmaus2/lz/BgzfConstants.hpp libmaus2/lz/BgzfDeflateHeaderFunctions.hpp libmaus2/lz/BgzfDeflateInputBufferBase.hpp libmaus2/lz/BgzfDeflateOutputBufferBase.hpp libmaus2/lz/BgzfDeflateZStreamBase.hpp libmaus2/lz/BgzfInflateHeaderBase.hpp libmaus2/lz/BgzfInflateZStreamBase.hpp libmaus2/lz/BgzfRecode.hpp libmaus2/lz/BgzfThreadOpBase.hpp libmaus2/lz/BgzfInflateDeflateParallel.hpp libmaus2/lz/BgzfInflateDeflateParallelThread.hpp '/<>/debian/tmp/usr/include/libmaus2/lz/' /usr/bin/install -c -m 644 libmaus2/lz/BgzfDeflateParallel.hpp libmaus2/lz/BgzfVirtualOffset.hpp libmaus2/lz/BgzfInflateDeflateParallelWrapper.hpp libmaus2/lz/BgzfInflateDeflateParallelInputStream.hpp libmaus2/lz/BgzfDeflateOutputCallback.hpp libmaus2/lz/BgzfDeflateOutputCallbackMD5.hpp libmaus2/lz/BgzfParallelRecodeDeflateBase.hpp libmaus2/lz/BgzfRecodeParallel.hpp libmaus2/lz/BgzfDeflateZStreamBaseFlushInfo.hpp libmaus2/lz/Lz4Base.hpp libmaus2/lz/Lz4CompressStreamBuffer.hpp libmaus2/lz/Lz4CompressWrapper.hpp libmaus2/lz/Lz4Decoder.hpp libmaus2/lz/Lz4Index.hpp libmaus2/lz/Lz4Compress.hpp libmaus2/lz/Lz4CompressStream.hpp libmaus2/lz/Lz4DecoderBuffer.hpp libmaus2/lz/GzipOutputStreamBuffer.hpp libmaus2/lz/GzipOutputStream.hpp libmaus2/lz/BgzfInflateInfo.hpp libmaus2/lz/BgzfStreamWrapper.hpp libmaus2/lz/CompressorObject.hpp libmaus2/lz/CompressorObjectFactory.hpp libmaus2/lz/SimpleCompressedOutputStream.hpp libmaus2/lz/SnappyCompressorObject.hpp libmaus2/lz/SnappyCompressorObjectFactory.hpp libmaus2/lz/DecompressorObject.hpp libmaus2/lz/DecompressorObjectFactory.hpp libmaus2/lz/SnappyDecompressorObject.hpp libmaus2/lz/SnappyDecompressorObjectFactory.hpp libmaus2/lz/SimpleCompressedInputStream.hpp libmaus2/lz/SimpleCompressedConcatInputStreamFragment.hpp libmaus2/lz/SimpleCompressedConcatInputStream.hpp libmaus2/lz/SnappyInputStreamArrayFile.hpp libmaus2/lz/SnappyInputStreamArray.hpp libmaus2/lz/SnappyStringInputStream.hpp libmaus2/lz/SnappyOffsetFileInputStream.hpp libmaus2/lz/SnappyFileInputStream.hpp libmaus2/lz/SnappyInputStream.hpp libmaus2/lz/SnappyFileOutputStream.hpp '/<>/debian/tmp/usr/include/libmaus2/lz/' /usr/bin/install -c -m 644 libmaus2/lz/SnappyOutputStream.hpp libmaus2/lz/SimpleCompressedStreamInterval.hpp libmaus2/lz/ZlibCompressorObjectFactory.hpp libmaus2/lz/ZlibDecompressorObjectFactory.hpp libmaus2/lz/ZlibCompressorObject.hpp libmaus2/lz/ZlibDecompressorObject.hpp libmaus2/lz/SimpleCompressedStreamNamedInterval.hpp libmaus2/lz/SimpleCompressedInputBlock.hpp libmaus2/lz/SimpleCompressedInputBlockConcat.hpp libmaus2/lz/SimpleCompressedInputBlockConcatBlock.hpp libmaus2/lz/RAZFConstants.hpp libmaus2/lz/RAZFDecoderBuffer.hpp libmaus2/lz/RAZFDecoder.hpp libmaus2/lz/RAZFIndex.hpp libmaus2/lz/IGzipDeflate.hpp libmaus2/lz/IsGzip.hpp libmaus2/lz/BufferedGzipStreamWrapper.hpp libmaus2/lz/StreamWrapperBuffer.hpp libmaus2/lz/BufferedGzipStreamBuffer.hpp libmaus2/lz/PlainOrGzipStreamBufferWrapper.hpp libmaus2/lz/PlainOrGzipStream.hpp libmaus2/lz/LineSplittingGzipOutputStreamBuffer.hpp libmaus2/lz/LineSplittingGzipOutputStream.hpp libmaus2/lz/CompressorObjectFreeListAllocator.hpp libmaus2/lz/SnappyCompressorObjectFreeListAllocator.hpp libmaus2/lz/SnappyCompressorObjectFactoryWrapper.hpp libmaus2/lz/ZlibCompressorObjectFactoryWrapper.hpp libmaus2/lz/ZlibCompressorObjectFreeListAllocator.hpp libmaus2/lz/CompressorObjectFreeListAllocatorFactory.hpp libmaus2/lz/BgzfDeflateOutputBufferBaseTypeInfo.hpp libmaus2/lz/BgzfDeflateOutputBufferBaseAllocator.hpp libmaus2/lz/BgzfDeflateZStreamBaseAllocator.hpp libmaus2/lz/BgzfDeflateZStreamBaseTypeInfo.hpp libmaus2/lz/BgzfInflateZStreamBaseAllocator.hpp libmaus2/lz/BgzfInflateZStreamBaseTypeInfo.hpp libmaus2/lz/XzDecoder.hpp libmaus2/lz/XzInputStreamBuffer.hpp libmaus2/lz/XzInputStream.hpp libmaus2/lz/BlockInflate.hpp libmaus2/lz/ConcatBlockInflate.hpp '/<>/debian/tmp/usr/include/libmaus2/lz/' /usr/bin/install -c -m 644 libmaus2/lz/ZlibInterface.hpp libmaus2/lz/BgzfInflateFile.hpp libmaus2/lz/BgzfInflateBaseTypeInfo.hpp libmaus2/lz/BgzfInflateBaseAllocator.hpp libmaus2/lz/BgzfInflateReadPackageDispatcher.hpp libmaus2/lz/BgzfInflateDecompressPackageDispatcher.hpp libmaus2/lz/BgzfInputContext.hpp libmaus2/lz/BgzfInflateThreadPoolReader.hpp '/<>/debian/tmp/usr/include/libmaus2/lz/' /bin/mkdir -p '/<>/debian/tmp/usr/include/libmaus2/math' /usr/bin/install -c -m 644 libmaus2/math/isqrt.hpp libmaus2/math/bitsPerNum.hpp libmaus2/math/MetaLog.hpp libmaus2/math/lowbits.hpp libmaus2/math/numbits.hpp libmaus2/math/gcd.hpp libmaus2/math/binom.hpp libmaus2/math/primes16.hpp libmaus2/math/ilog.hpp libmaus2/math/DoubleCode.hpp libmaus2/math/iabs.hpp libmaus2/math/IPower.hpp libmaus2/math/Log.hpp libmaus2/math/ipow.hpp libmaus2/math/IntegerInterval.hpp libmaus2/math/DecimalNumberParser.hpp libmaus2/math/UnsignedInteger.hpp libmaus2/math/Rational.hpp libmaus2/math/BernoulliNumber.hpp libmaus2/math/Faulhaber.hpp libmaus2/math/RepetetiveKmerFreqEstimate.hpp libmaus2/math/GmpInteger.hpp libmaus2/math/GmpFloat.hpp libmaus2/math/Convolution.hpp libmaus2/math/GeneralisedBernoulli.hpp libmaus2/math/GeneralisedClusterBernoulli.hpp libmaus2/math/ClusteredBernoulli.hpp libmaus2/math/RationalPolynomialSupport.hpp libmaus2/math/ConstantSumCombinatorics.hpp libmaus2/math/LGammaCache.hpp libmaus2/math/Bernoulli.hpp '/<>/debian/tmp/usr/include/libmaus2/math' /bin/mkdir -p '/<>/debian/tmp/usr/include/libmaus2/network' /usr/bin/install -c -m 644 libmaus2/network/Socket.hpp libmaus2/network/GetHostName.hpp libmaus2/network/SocketFastReaderBase.hpp libmaus2/network/Interface.hpp libmaus2/network/GetDottedAddress.hpp libmaus2/network/UDPSocket.hpp libmaus2/network/GenericServer.hpp libmaus2/network/SocketOutputBuffer8.hpp libmaus2/network/SocketOutputBuffer8Set.hpp libmaus2/network/sendReceiveFd.h libmaus2/network/SocketPair.hpp libmaus2/network/FileDescriptorPasser.hpp libmaus2/network/SocketInputStreamBuffer.hpp libmaus2/network/SocketInputStream.hpp libmaus2/network/HttpAbsoluteUrl.hpp libmaus2/network/SocketInputOutputInterface.hpp libmaus2/network/FtpUrl.hpp libmaus2/network/HttpBody.hpp libmaus2/network/HttpHeader.hpp libmaus2/network/FtpSocket.hpp libmaus2/network/UrlBase.hpp libmaus2/network/HttpHeaderWrapper.hpp libmaus2/network/HttpBodyWrapper.hpp libmaus2/network/FtpSocketWrapper.hpp libmaus2/network/HttpSocketInputStreamBuffer.hpp libmaus2/network/HttpSocketInputStream.hpp libmaus2/network/FtpSocketInputStreamBuffer.hpp libmaus2/network/FtpSocketInputStream.hpp libmaus2/network/FileUrl.hpp libmaus2/network/UrlInputStreamBufferWrapper.hpp libmaus2/network/UrlInputStream.hpp libmaus2/network/GnuTLSInit.hpp libmaus2/network/GnuTLSSocket.hpp libmaus2/network/SingleFileServer.hpp libmaus2/network/UrlInputStreamFactory.hpp '/<>/debian/tmp/usr/include/libmaus2/network' /bin/mkdir -p '/<>/debian/tmp/usr/include/libmaus2/parallel' /usr/bin/install -c -m 644 libmaus2/parallel/OMPLock.hpp libmaus2/parallel/PosixMutex.hpp libmaus2/parallel/PosixSpinLock.hpp libmaus2/parallel/PosixSemaphore.hpp libmaus2/parallel/SynchronousQueue.hpp libmaus2/parallel/TerminatableSynchronousQueue.hpp libmaus2/parallel/PosixMutexArray.hpp libmaus2/parallel/PosixThread.hpp libmaus2/parallel/Pipe.hpp libmaus2/parallel/SynchronousHeap.hpp libmaus2/parallel/TerminatableSynchronousHeap.hpp libmaus2/parallel/SynchronousReorderSet.hpp libmaus2/parallel/TerminatableSynchronousReorderSet.hpp libmaus2/parallel/SynchronousCounter.hpp libmaus2/parallel/PosixProcess.hpp libmaus2/parallel/OMPNumThreadsScope.hpp libmaus2/parallel/LockedBool.hpp libmaus2/parallel/ThreadWorkPackage.hpp libmaus2/parallel/ThreadWorkPackageComparator.hpp libmaus2/parallel/ThreadPoolInterfaceEnqueTermInterface.hpp libmaus2/parallel/ThreadWorkPackageDispatcher.hpp libmaus2/parallel/ThreadPoolInterface.hpp libmaus2/parallel/ThreadPoolThread.hpp libmaus2/parallel/ThreadPool.hpp libmaus2/parallel/SimpleThreadPool.hpp libmaus2/parallel/SimpleThreadPoolInterfaceEnqueTermInterface.hpp libmaus2/parallel/SimpleThreadPoolInterface.hpp libmaus2/parallel/SimpleThreadPoolThread.hpp libmaus2/parallel/SimpleThreadPoolWorkPackageFreeList.hpp libmaus2/parallel/SimpleThreadWorkPackageComparator.hpp libmaus2/parallel/SimpleThreadWorkPackageDispatcher.hpp libmaus2/parallel/SimpleThreadWorkPackage.hpp libmaus2/parallel/LockedQueue.hpp libmaus2/parallel/NumCpus.hpp libmaus2/parallel/LockedFreeList.hpp libmaus2/parallel/LockedHeap.hpp libmaus2/parallel/LockedCounter.hpp libmaus2/parallel/LockedGrowingFreeList.hpp libmaus2/parallel/PosixConditionSemaphore.hpp libmaus2/parallel/NamedPosixSemaphore.hpp '/<>/debian/tmp/usr/include/libmaus2/parallel' /usr/bin/install -c -m 644 libmaus2/parallel/SimpleSemaphoreInterface.hpp libmaus2/parallel/TimedSemaphoreInterface.hpp libmaus2/parallel/SynchronousConditionQueue.hpp '/<>/debian/tmp/usr/include/libmaus2/parallel' /bin/mkdir -p '/<>/debian/tmp/usr/include/libmaus2/quantisation/' /usr/bin/install -c -m 644 libmaus2/quantisation/Quantiser.hpp libmaus2/quantisation/ClusterComputation.hpp libmaus2/quantisation/KmeansDataType.hpp '/<>/debian/tmp/usr/include/libmaus2/quantisation/' /bin/mkdir -p '/<>/debian/tmp/usr/include/libmaus2/random' /usr/bin/install -c -m 644 libmaus2/random/Random.hpp libmaus2/random/UniformUnitRandom.hpp libmaus2/random/GaussianRandom.hpp libmaus2/random/DNABaseNoiseSpiker.hpp libmaus2/random/Poisson.hpp libmaus2/random/LogNormalRandom.hpp '/<>/debian/tmp/usr/include/libmaus2/random' /bin/mkdir -p '/<>/debian/tmp/usr/include/libmaus2/rank' /usr/bin/install -c -m 644 libmaus2/rank/ChooseCache.hpp libmaus2/rank/CodeBase.hpp libmaus2/rank/DecodeCache.hpp libmaus2/rank/ERank222BAppend.hpp libmaus2/rank/ERank222B.hpp libmaus2/rank/ERank222BP.hpp libmaus2/rank/ERank222.hpp libmaus2/rank/ERank22B.hpp libmaus2/rank/ERank22.hpp libmaus2/rank/ERank2.hpp libmaus2/rank/ERank3C.hpp libmaus2/rank/ERank3.hpp libmaus2/rank/ERankBase.hpp libmaus2/rank/ERank.hpp libmaus2/rank/log2table.hpp libmaus2/rank/popcnt.hpp libmaus2/rank/RankTable.hpp libmaus2/rank/Proc01.hpp libmaus2/rank/EncodeCache.hpp libmaus2/rank/CacheLineRank.hpp libmaus2/rank/ImpCacheLineRank.hpp libmaus2/rank/ERank222BBase.hpp libmaus2/rank/ERank222BAppendDynamic.hpp libmaus2/rank/RunLengthBitVectorBase.hpp libmaus2/rank/RunLengthBitVector.hpp libmaus2/rank/RunLengthBitVectorGenerator.hpp libmaus2/rank/RunLengthBitVectorStream.hpp libmaus2/rank/RunLengthBitVectorGeneratorBase.hpp libmaus2/rank/RunLengthBitVectorGeneratorGammaBase.hpp libmaus2/rank/FastRank.hpp libmaus2/rank/BSwapBase.hpp libmaus2/rank/DNARank.hpp libmaus2/rank/DNARankKmerCache.hpp libmaus2/rank/DNARankBiDir.hpp libmaus2/rank/DNARankBiDirRange.hpp libmaus2/rank/DNARankMEM.hpp libmaus2/rank/DNARankMEMPosComparator.hpp libmaus2/rank/DNARankSMEMContext.hpp libmaus2/rank/DNARankSMEMComputation.hpp libmaus2/rank/DNARankGetPosition.hpp '/<>/debian/tmp/usr/include/libmaus2/rank' /usr/bin/install -c -m 644 libmaus2/rank/DNARankBiDirRangeSizeComparator.hpp libmaus2/rank/DNARankSuffixTreeNodeEnumeratorQueueElement.hpp libmaus2/rank/DNARankSuffixTreeNodeEnumerator.hpp '/<>/debian/tmp/usr/include/libmaus2/rank' /bin/mkdir -p '/<>/debian/tmp/usr/include/libmaus2/regex/' /usr/bin/install -c -m 644 libmaus2/regex/PosixRegex.hpp '/<>/debian/tmp/usr/include/libmaus2/regex/' /bin/mkdir -p '/<>/debian/tmp/usr/include/libmaus2/rl' /usr/bin/install -c -m 644 libmaus2/rl/RLIndex.hpp '/<>/debian/tmp/usr/include/libmaus2/rl' /bin/mkdir -p '/<>/debian/tmp/usr/include/libmaus2/rmq' /usr/bin/install -c -m 644 libmaus2/rmq/FischerSystematicSuccinctRMQ.hpp libmaus2/rmq/QuickDynamicRMQ.hpp libmaus2/rmq/CartesianTree.hpp libmaus2/rmq/RMMTree.hpp '/<>/debian/tmp/usr/include/libmaus2/rmq' /bin/mkdir -p '/<>/debian/tmp/usr/include/libmaus2/select' /usr/bin/install -c -m 644 libmaus2/select/ESelect222B.hpp libmaus2/select/ESelectBase.hpp libmaus2/select/ESelectSimple.hpp libmaus2/select/ImpCacheLineSelectSupport.hpp '/<>/debian/tmp/usr/include/libmaus2/select' /bin/mkdir -p '/<>/debian/tmp/usr/include/libmaus2/serialize/' /usr/bin/install -c -m 644 libmaus2/serialize/Serialize.hpp '/<>/debian/tmp/usr/include/libmaus2/serialize/' /bin/mkdir -p '/<>/debian/tmp/usr/include/libmaus2/sorting' /usr/bin/install -c -m 644 libmaus2/sorting/sorting.hpp libmaus2/sorting/ParallelRadixSort.hpp libmaus2/sorting/SerialRadixSort64.hpp libmaus2/sorting/PairFileSorting.hpp libmaus2/sorting/InPlaceParallelSort.hpp libmaus2/sorting/MergingReadBack.hpp libmaus2/sorting/SortingBufferedOutputFile.hpp libmaus2/sorting/MergeStepBinSearchResult.hpp libmaus2/sorting/ParallelStableSort.hpp libmaus2/sorting/SemiExternalKeyTupleSort.hpp libmaus2/sorting/InterleavedRadixSort.hpp libmaus2/sorting/ParallelRunLengthRadixUnsort.hpp libmaus2/sorting/ParallelRunLengthRadixSort.hpp libmaus2/sorting/ParallelExternalRadixSort.hpp '/<>/debian/tmp/usr/include/libmaus2/sorting' /bin/mkdir -p '/<>/debian/tmp/usr/include/libmaus2/suffixsort' /usr/bin/install -c -m 644 libmaus2/suffixsort/SkewSuffixSort.hpp libmaus2/suffixsort/divsufsort.hpp libmaus2/suffixsort/SAIS_Mori.hpp libmaus2/suffixsort/SuccinctFactorList.hpp libmaus2/suffixsort/SAISUtils.hpp libmaus2/suffixsort/OSInduce.hpp libmaus2/suffixsort/CircularBwt.hpp libmaus2/suffixsort/CircularSuffixComparator.hpp libmaus2/suffixsort/BwtMergeTempFileNameSet.hpp libmaus2/suffixsort/BwtMergeZBlock.hpp libmaus2/suffixsort/BwtMergeTempFileNameSetVector.hpp libmaus2/suffixsort/BwtMergeBlockSortResult.hpp libmaus2/suffixsort/BwtMergeZBlockRequest.hpp libmaus2/suffixsort/BwtMergeZBlockRequestVector.hpp libmaus2/suffixsort/GapMergePacket.hpp libmaus2/suffixsort/BwtMergeEnumBase.hpp libmaus2/suffixsort/ByteInputTypes.hpp libmaus2/suffixsort/CompactInputTypes.hpp libmaus2/suffixsort/PacInputTypes.hpp libmaus2/suffixsort/PacTermInputTypes.hpp libmaus2/suffixsort/Utf8InputTypes.hpp libmaus2/suffixsort/Lz4InputTypes.hpp libmaus2/suffixsort/GapArrayByteDecoderBuffer.hpp libmaus2/suffixsort/GapArrayByte.hpp libmaus2/suffixsort/GapArrayByteDecoder.hpp libmaus2/suffixsort/GapArrayByteOverflowKeyAccessor.hpp libmaus2/suffixsort/BwtMergeBlockSortRequestBase.hpp libmaus2/suffixsort/BwtMergeBlockSortRequest.hpp libmaus2/suffixsort/SmallestRotation.hpp '/<>/debian/tmp/usr/include/libmaus2/suffixsort' /bin/mkdir -p '/<>/debian/tmp/usr/include/libmaus2/suffixsort/bwtb3m' /usr/bin/install -c -m 644 libmaus2/suffixsort/bwtb3m/MergeStrategyMergeGapRequestQueryObject.hpp libmaus2/suffixsort/bwtb3m/MergeStrategyBlock.hpp libmaus2/suffixsort/bwtb3m/MergeStrategyBaseBlock.hpp libmaus2/suffixsort/bwtb3m/MergeStrategyMergeGapRequest.hpp libmaus2/suffixsort/bwtb3m/MergeStrategyMergeBlock.hpp libmaus2/suffixsort/bwtb3m/MergeStrategyMergeInternalBlock.hpp libmaus2/suffixsort/bwtb3m/MergeStrategyMergeInternalSmallBlock.hpp libmaus2/suffixsort/bwtb3m/MergeStrategyMergeExternalBlock.hpp libmaus2/suffixsort/bwtb3m/MergeStrategyConstruction.hpp libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp libmaus2/suffixsort/bwtb3m/BaseBlockSortThread.hpp libmaus2/suffixsort/bwtb3m/BaseBlockSorting.hpp libmaus2/suffixsort/bwtb3m/BwtMergeSortOptions.hpp libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.hpp libmaus2/suffixsort/bwtb3m/BwtComputeSSA.hpp libmaus2/suffixsort/bwtb3m/BwtSelectSSA.hpp libmaus2/suffixsort/bwtb3m/MergeStrategyMergeInput.hpp '/<>/debian/tmp/usr/include/libmaus2/suffixsort/bwtb3m' /bin/mkdir -p '/<>/debian/tmp/usr/include/libmaus2/suffixtree' /usr/bin/install -c -m 644 libmaus2/suffixtree/CompressedSuffixTree.hpp '/<>/debian/tmp/usr/include/libmaus2/suffixtree' /bin/mkdir -p '/<>/debian/tmp/usr/include/libmaus2/sv' /usr/bin/install -c -m 644 libmaus2/sv/sv.hpp '/<>/debian/tmp/usr/include/libmaus2/sv' /bin/mkdir -p '/<>/debian/tmp/usr/include/libmaus2/timing' /usr/bin/install -c -m 644 libmaus2/timing/RealTimeClock.hpp '/<>/debian/tmp/usr/include/libmaus2/timing' /bin/mkdir -p '/<>/debian/tmp/usr/include/libmaus2/trie' /usr/bin/install -c -m 644 libmaus2/trie/TrieState.hpp libmaus2/trie/SimpleTrie.hpp '/<>/debian/tmp/usr/include/libmaus2/trie' /bin/mkdir -p '/<>/debian/tmp/usr/include/libmaus2/types/' /usr/bin/install -c -m 644 libmaus2/types/types.hpp '/<>/debian/tmp/usr/include/libmaus2/types/' /bin/mkdir -p '/<>/debian/tmp/usr/include/libmaus2/uint' /usr/bin/install -c -m 644 libmaus2/uint/uint.hpp '/<>/debian/tmp/usr/include/libmaus2/uint' /bin/mkdir -p '/<>/debian/tmp/usr/include/libmaus2/util' /usr/bin/install -c -m 644 libmaus2/util/stringFunctions.hpp libmaus2/util/BitList.hpp libmaus2/util/VarBitList.hpp libmaus2/util/VarList.hpp libmaus2/util/IntervalTree.hpp libmaus2/util/LookupIntervalTree.hpp libmaus2/util/StringSerialisation.hpp libmaus2/util/NumberSerialisation.hpp libmaus2/util/GetFileSize.hpp libmaus2/util/unique_ptr.hpp libmaus2/util/shared_ptr.hpp libmaus2/util/TempFileNameGenerator.hpp libmaus2/util/TempFileNameGeneratorState.hpp libmaus2/util/Demangle.hpp libmaus2/util/BitsPerNum.hpp libmaus2/util/ArgInfo.hpp libmaus2/util/Concat.hpp libmaus2/util/ConcatRequest.hpp libmaus2/util/PosixExecute.hpp libmaus2/util/StackTrace.hpp libmaus2/util/CompactNumberArray.hpp libmaus2/util/ArrayIterator.hpp libmaus2/util/OffsetArray.hpp libmaus2/util/Array832.hpp libmaus2/util/Array864.hpp libmaus2/util/NegativeDifferenceArray32.hpp libmaus2/util/NegativeDifferenceArray64.hpp libmaus2/util/PositiveDifferenceArray32.hpp libmaus2/util/PositiveDifferenceArray64.hpp libmaus2/util/UniqueIndex.hpp libmaus2/util/Terminal.hpp libmaus2/util/nstat.hpp libmaus2/util/WriteableString.hpp libmaus2/util/LogPipe.hpp libmaus2/util/MoveStack.hpp libmaus2/util/LongestIncreasingSubsequence.hpp libmaus2/util/utf8.hpp libmaus2/util/MemLimit.hpp libmaus2/util/Histogram.hpp libmaus2/util/IncreasingList.hpp '/<>/debian/tmp/usr/include/libmaus2/util' /usr/bin/install -c -m 644 libmaus2/util/GenericSerialisation.hpp libmaus2/util/ConsoleColor.hpp libmaus2/util/LogPipeMultiplex.hpp libmaus2/util/LogPipeMultiplexGeneric.hpp libmaus2/util/iterator.hpp libmaus2/util/SaturatingCounter.hpp libmaus2/util/I386CacheLineSize.hpp libmaus2/util/IncreasingStack.hpp libmaus2/util/NearestNeighbourDictionary.hpp libmaus2/util/MemUsage.hpp libmaus2/util/unordered_set.hpp libmaus2/util/unordered_map.hpp libmaus2/util/ReverseByteOrder.hpp libmaus2/util/SimpleBloomFilter.hpp libmaus2/util/SimpleCountingHash.hpp libmaus2/util/SimpleHashMap.hpp libmaus2/util/SimpleHashSet.hpp libmaus2/util/OutputFileNameTools.hpp libmaus2/util/LELoad.hpp libmaus2/util/GetObject.hpp libmaus2/util/PutObject.hpp libmaus2/util/PutObjectReverse.hpp libmaus2/util/CountPutObject.hpp libmaus2/util/CountPutIterator.hpp libmaus2/util/PosixFileDescriptor.hpp libmaus2/util/AlphaDigitTable.hpp libmaus2/util/AlphaTable.hpp libmaus2/util/DigitTable.hpp libmaus2/util/TempFileRemovalContainer.hpp libmaus2/util/DynamicLoading.hpp libmaus2/util/Object.hpp libmaus2/util/KMP.hpp libmaus2/util/NumberMapSerialisation.hpp libmaus2/util/Utf8BlockIndex.hpp libmaus2/util/Utf8DecoderBuffer.hpp libmaus2/util/Utf8String.hpp libmaus2/util/UnsignedCharVariant.hpp libmaus2/util/CountGetObject.hpp libmaus2/util/HistogramSet.hpp libmaus2/util/GenericIntervalTree.hpp '/<>/debian/tmp/usr/include/libmaus2/util' /usr/bin/install -c -m 644 libmaus2/util/PosixInputFile.hpp libmaus2/util/OctetString.hpp libmaus2/util/Utf8StringPairAdapter.hpp libmaus2/util/Utf8BlockIndexDecoder.hpp libmaus2/util/Utf8DecoderWrapper.hpp libmaus2/util/TempFileContainer.hpp libmaus2/util/FileTempFileContainer.hpp libmaus2/util/MemTempFileContainer.hpp libmaus2/util/ImpCompactNumberArray.hpp libmaus2/util/ContainerGetObject.hpp libmaus2/util/PushBuffer.hpp libmaus2/util/SuccinctBorderArray.hpp libmaus2/util/LineAccessor.hpp libmaus2/util/StringMapCompare.hpp libmaus2/util/FreeList.hpp libmaus2/util/ToUpperTable.hpp libmaus2/util/BorderArray.hpp libmaus2/util/SimpleHashMapConstants.hpp libmaus2/util/SimpleHashMapKeyPrint.hpp libmaus2/util/GrowingFreeList.hpp libmaus2/util/SimpleHashMapHashCompute.hpp libmaus2/util/SimpleHashMapInsDel.hpp libmaus2/util/SimpleHashMapNumberCast.hpp libmaus2/util/SimpleHashSetInsDel.hpp libmaus2/util/LineBuffer.hpp libmaus2/util/UnsignedIntegerIndexIterator.hpp libmaus2/util/FiniteSizeHeap.hpp libmaus2/util/UnitNum.hpp libmaus2/util/NotDigitOrTermTable.hpp libmaus2/util/ArgInfoParseBase.hpp libmaus2/util/ReverseAdapter.hpp libmaus2/util/MemoryStatistics.hpp libmaus2/util/LongestIncreasingSubsequenceExtendedResult.hpp libmaus2/util/ArgParser.hpp libmaus2/util/PrefixSums.hpp libmaus2/util/NumberToString.hpp libmaus2/util/SplayTree.hpp libmaus2/util/Queue.hpp libmaus2/util/ContainerElementFreeList.hpp libmaus2/util/HugePages.hpp '/<>/debian/tmp/usr/include/libmaus2/util' /usr/bin/install -c -m 644 libmaus2/util/HugePageAllocator.hpp libmaus2/util/StringAllocTypes.hpp libmaus2/util/Destructable.hpp libmaus2/util/SimpleQueue.hpp libmaus2/util/SimpleHashMapDisplaceMaskFunction.hpp libmaus2/util/Command.hpp libmaus2/util/CommandContainer.hpp libmaus2/util/Enumerator.hpp libmaus2/util/LocalTempContainer.hpp libmaus2/util/ContainerDescription.hpp libmaus2/util/ContainerDescriptionList.hpp libmaus2/util/TarWriter.hpp libmaus2/util/U.hpp libmaus2/util/AutoArrayCharBaseTypeInfo.hpp libmaus2/util/AutoArrayCharBaseAllocator.hpp libmaus2/util/FileEnumerator.hpp libmaus2/util/PathTools.hpp libmaus2/util/Base64.hpp libmaus2/util/AutoArrayUInt8TBaseAllocator.hpp libmaus2/util/AutoArrayUInt8TBaseTypeInfo.hpp libmaus2/util/DirectoryStructure.hpp '/<>/debian/tmp/usr/include/libmaus2/util' /bin/mkdir -p '/<>/debian/tmp/usr/include/libmaus2/wavelet' /usr/bin/install -c -m 644 libmaus2/wavelet/toWaveletTreeBits.hpp libmaus2/wavelet/WaveletTree.hpp libmaus2/wavelet/HuffmanWaveletTree.hpp libmaus2/wavelet/DynamicHuffmanWaveletTree.hpp libmaus2/wavelet/DynamicWaveletTree.hpp libmaus2/wavelet/ExternalWaveletGenerator.hpp libmaus2/wavelet/ImpWaveletTree.hpp libmaus2/wavelet/ImpExternalWaveletGenerator.hpp libmaus2/wavelet/ImpExternalWaveletGeneratorHuffmanParallel.hpp libmaus2/wavelet/ImpExternalWaveletGeneratorHuffman.hpp libmaus2/wavelet/ImpHuffmanWaveletTree.hpp libmaus2/wavelet/Utf8ToImpHuffmanWaveletTree.hpp libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp libmaus2/wavelet/ImpCompactHuffmanWaveletTree.hpp libmaus2/wavelet/ImpExternalWaveletGeneratorCompactHuffman.hpp libmaus2/wavelet/ImpExternalWaveletGeneratorCompactHuffmanParallel.hpp libmaus2/wavelet/RlToHwtBase.hpp libmaus2/wavelet/RlToHwtTermRequest.hpp '/<>/debian/tmp/usr/include/libmaus2/wavelet' make[3]: Leaving directory '/<>/src' make[2]: Leaving directory '/<>/src' make[2]: Entering directory '/<>' make[3]: Entering directory '/<>' make[3]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/<>/debian/tmp/usr/share/doc/libmaus2' /usr/bin/install -c -m 644 ChangeLog '/<>/debian/tmp/usr/share/doc/libmaus2' /bin/mkdir -p '/<>/debian/tmp/usr/lib/arm-linux-gnueabi/pkgconfig' /usr/bin/install -c -m 644 libmaus2.pc libmaus2digests.pc libmaus2seqchksumsfactory.pc libmaus2fftw.pc '/<>/debian/tmp/usr/lib/arm-linux-gnueabi/pkgconfig' make install-data-hook make[4]: Entering directory '/<>' cd /<>/debian/tmp/usr/share/doc/libmaus2 && mv ChangeLog changelog && gzip -f -n -9 changelog make[4]: Leaving directory '/<>' make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' debian/rules override_dh_install make[1]: Entering directory '/<>' dh_install d-shlibmove --commit \ --multiarch \ --devunversioned \ --exclude-la \ --movedev debian/tmp/usr/include/* usr/include \ --movedev "debian/tmp/usr/lib/*/pkgconfig/*.pc" usr/lib/arm-linux-gnueabi/pkgconfig \ debian/tmp/usr/lib/*/*.so Library package automatic movement utility --> zlib1g-dev package exists. set -e install -d -m 755 debian/libmaus2-dev/usr/lib/arm-linux-gnueabi install -d -m 755 debian/libmaus2-2/usr/lib/arm-linux-gnueabi mv debian/tmp/usr/lib/arm-linux-gnueabi/libmaus2.a debian/libmaus2-dev/usr/lib/arm-linux-gnueabi mv debian/tmp/usr/lib/arm-linux-gnueabi/libmaus2.so debian/libmaus2-dev/usr/lib/arm-linux-gnueabi mv /<>/debian/tmp/usr/lib/arm-linux-gnueabi/libmaus2.so.2 debian/libmaus2-2/usr/lib/arm-linux-gnueabi mv /<>/debian/tmp/usr/lib/arm-linux-gnueabi/libmaus2.so.2.0.611 debian/libmaus2-2/usr/lib/arm-linux-gnueabi PKGDEV=libmaus2-dev PKGSHL=libmaus2-2 install -d -m 755 debian/libmaus2-dev/usr/include mv debian/tmp/usr/include/libmaus2 debian/libmaus2-dev/usr/include install -d -m 755 debian/libmaus2-dev/usr/lib/arm-linux-gnueabi/pkgconfig mv debian/tmp/usr/lib/*/pkgconfig/*.pc debian/libmaus2-dev/usr/lib/arm-linux-gnueabi/pkgconfig # Remove unneeded options from *.pc files find debian -name "*.pc" -exec sed -i -e 's/-Wdate-time *//' -e 's/-D_FORTIFY_SOURCE=2 *//' \{\} \; # avoid noise from dh-missing by deleting unneeded files find debian/tmp -type f -name "*.la" -delete # Changelog is installed via dh_installchangelogs rm -f debian/tmp/usr/share/doc/libmaus2/changelog.gz make[1]: Leaving directory '/<>' dh_installdocs -a debian/rules override_dh_installchangelogs make[1]: Entering directory '/<>' dh_installchangelogs ChangeLog make[1]: Leaving directory '/<>' dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: symbol _ZTIN8libmaus24util10StackTraceE used by debian/libmaus2-2/usr/lib/arm-linux-gnueabi/libmaus2_simd_align_256.so.2.0.611 found in none of the libraries dpkg-shlibdeps: warning: symbol _ZN8libmaus24util8Demangle12demangleNameENSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE used by debian/libmaus2-2/usr/lib/arm-linux-gnueabi/libmaus2_simd_align_256.so.2.0.611 found in none of the libraries dpkg-shlibdeps: warning: symbol _ZNK8libmaus24util10StackTrace8toStringB5cxx11Eb used by debian/libmaus2-2/usr/lib/arm-linux-gnueabi/libmaus2_simd_align_256.so.2.0.611 found in none of the libraries dpkg-shlibdeps: warning: symbol _ZN8libmaus29autoarray22AutoArray_peakmemusageE used by debian/libmaus2-2/usr/lib/arm-linux-gnueabi/libmaus2_simd_align_256.so.2.0.611 found in none of the libraries dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/libmaus2-2/usr/lib/arm-linux-gnueabi/libmaus2_simd_align_256.so.2.0.611 found in none of the libraries dpkg-shlibdeps: warning: symbol pthread_spin_unlock used by debian/libmaus2-2/usr/lib/arm-linux-gnueabi/libmaus2_simd_align_256.so.2.0.611 found in none of the libraries dpkg-shlibdeps: warning: symbol pthread_spin_lock used by debian/libmaus2-2/usr/lib/arm-linux-gnueabi/libmaus2_simd_align_256.so.2.0.611 found in none of the libraries dpkg-shlibdeps: warning: symbol _ZN8libmaus23aio10StreamLock8cerrlockE used by debian/libmaus2-2/usr/lib/arm-linux-gnueabi/libmaus2_simd_align_256.so.2.0.611 found in none of the libraries dpkg-shlibdeps: warning: symbol _ZN8libmaus24util10StackTraceD2Ev used by debian/libmaus2-2/usr/lib/arm-linux-gnueabi/libmaus2_simd_align_256.so.2.0.611 found in none of the libraries dpkg-shlibdeps: warning: symbol _ZN8libmaus29autoarray16AutoArray_maxmemE used by debian/libmaus2-2/usr/lib/arm-linux-gnueabi/libmaus2_simd_align_256.so.2.0.611 found in none of the libraries dpkg-shlibdeps: warning: 2 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: symbol pthread_spin_init used by debian/libmaus2-2/usr/lib/arm-linux-gnueabi/libmaus2.so.2.0.611 found in none of the libraries dpkg-shlibdeps: warning: symbol sem_post used by debian/libmaus2-2/usr/lib/arm-linux-gnueabi/libmaus2.so.2.0.611 found in none of the libraries dpkg-shlibdeps: warning: symbol sem_destroy used by debian/libmaus2-2/usr/lib/arm-linux-gnueabi/libmaus2.so.2.0.611 found in none of the libraries dpkg-shlibdeps: warning: symbol pthread_spin_lock used by debian/libmaus2-2/usr/lib/arm-linux-gnueabi/libmaus2.so.2.0.611 found in none of the libraries dpkg-shlibdeps: warning: symbol sem_timedwait used by debian/libmaus2-2/usr/lib/arm-linux-gnueabi/libmaus2.so.2.0.611 found in none of the libraries dpkg-shlibdeps: warning: symbol pthread_create used by debian/libmaus2-2/usr/lib/arm-linux-gnueabi/libmaus2.so.2.0.611 found in none of the libraries dpkg-shlibdeps: warning: symbol pthread_spin_unlock used by debian/libmaus2-2/usr/lib/arm-linux-gnueabi/libmaus2.so.2.0.611 found in none of the libraries dpkg-shlibdeps: warning: symbol sem_trywait used by debian/libmaus2-2/usr/lib/arm-linux-gnueabi/libmaus2.so.2.0.611 found in none of the libraries dpkg-shlibdeps: warning: symbol pthread_spin_destroy used by debian/libmaus2-2/usr/lib/arm-linux-gnueabi/libmaus2.so.2.0.611 found in none of the libraries dpkg-shlibdeps: warning: symbol sem_wait used by debian/libmaus2-2/usr/lib/arm-linux-gnueabi/libmaus2.so.2.0.611 found in none of the libraries dpkg-shlibdeps: warning: 5 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/libmaus2-2/usr/lib/arm-linux-gnueabi/libmaus2/2.0.611/libmaus2_scram_mod.so was not linked against libpthread.so.0 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/libmaus2-2/usr/lib/arm-linux-gnueabi/libmaus2/2.0.611/libmaus2_scram_mod.so debian/libmaus2-2/usr/lib/arm-linux-gnueabi/libmaus2_simd_align_128.so.2.0.611 debian/libmaus2-2/usr/lib/arm-linux-gnueabi/libmaus2_simd_align_256.so.2.0.611 debian/libmaus2-2/usr/lib/arm-linux-gnueabi/libmaus2.so.2.0.611 were not linked against libz.so.1 (they use none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/libmaus2-2/usr/lib/arm-linux-gnueabi/libmaus2/2.0.611/libmaus2_scram_mod.so debian/libmaus2-2/usr/lib/arm-linux-gnueabi/libmaus2_simd_align_128.so.2.0.611 debian/libmaus2-2/usr/lib/arm-linux-gnueabi/libmaus2_simd_align_256.so.2.0.611 debian/libmaus2-2/usr/lib/arm-linux-gnueabi/libmaus2.so.2.0.611 were not linked against librt.so.1 (they use none of the library's symbols) dh_installdeb -a dh_gencontrol -a dpkg-gencontrol: warning: Depends field of package libmaus2-dev: substitution variable ${shlibs:Depends} used, but is not defined dpkg-gencontrol: warning: package libmaus2-dev: substitution variable ${devlibs:Depends} unused, but is defined dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'libmaus2-2' in '../libmaus2-2_2.0.611-1_armel.deb'. dpkg-deb: building package 'libmaus2-2-dbgsym' in '../libmaus2-2-dbgsym_2.0.611-1_armel.deb'. dpkg-deb: building package 'libmaus2-dev' in '../libmaus2-dev_2.0.611-1_armel.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any >../libmaus2_2.0.611-1_armel.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2019-08-04T20:20:00Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:amd64 Filtered Build-Depends: lintian:amd64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/resolver-9Qc95f/apt_archive/sbuild-build-depends-lintian-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-essential-dummy sbuild-build-depends-libmaus2-dummy sbuild-build-depends-lintian-dummy dpkg-scanpackages: info: Wrote 4 entries to output Packages file. Ign:1 copy:/<>/resolver-9Qc95f/apt_archive ./ InRelease Get:2 copy:/<>/resolver-9Qc95f/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-9Qc95f/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-9Qc95f/apt_archive ./ Sources [775 B] Get:5 copy:/<>/resolver-9Qc95f/apt_archive ./ Packages [854 B] Fetched 2592 B in 0s (137 kB/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: diffstat gpg gpgconf libapt-pkg-perl libassuan0 libb-hooks-op-check-perl libcapture-tiny-perl libcgi-pm-perl libclass-accessor-perl libclass-method-modifiers-perl libclone-perl libdevel-callchecker-perl libdevel-globaldestruction-perl libdigest-hmac-perl libdynaloader-functions-perl libemail-valid-perl libexporter-tiny-perl libfile-basedir-perl libfuture-perl libhtml-parser-perl libhtml-tagset-perl libimport-into-perl libio-async-perl libio-pty-perl libio-socket-ssl-perl libipc-run-perl libipc-system-simple-perl liblist-compare-perl liblist-moreutils-perl libmailtools-perl libmodule-runtime-perl libmoo-perl libnet-dns-perl libnet-domain-tld-perl libnet-ip-perl libnet-smtp-ssl-perl libnet-ssleay-perl libparams-classify-perl libparse-debianchangelog-perl libpath-tiny-perl libreadline8 librole-tiny-perl libsqlite3-0 libssl1.1 libstrictures-perl libstruct-dumb-perl libsub-exporter-progressive-perl libsub-name-perl libsub-quote-perl libtext-levenshtein-perl libtimedate-perl libtry-tiny-perl libtype-tiny-perl liburi-perl libyaml-0-2 libyaml-libyaml-perl lintian netbase patchutils perl-openssl-defaults readline-common t1utils Suggested packages: libdata-dump-perl ca-certificates libscalar-number-perl libhtml-template-perl libbareword-filehandles-perl libindirect-perl libmultidimensional-perl libdevel-lexalias-perl libdevel-stacktrace-perl libwww-perl binutils-multiarch libtext-template-perl readline-doc Recommended packages: gnupg libcgi-fast-perl libhttp-message-perl libasync-mergepoint-perl libsereal-perl libtest-fatal-perl libtest-refcount-perl libclass-xsaccessor-perl libdigest-bubblebabble-perl libnet-dns-sec-perl libnet-libidn-perl libauthen-sasl-perl libunicode-utf8-perl libref-util-perl libtype-tiny-xs-perl libperlio-gzip-perl The following NEW packages will be installed: diffstat gpg gpgconf libapt-pkg-perl libassuan0 libb-hooks-op-check-perl libcapture-tiny-perl libcgi-pm-perl libclass-accessor-perl libclass-method-modifiers-perl libclone-perl libdevel-callchecker-perl libdevel-globaldestruction-perl libdigest-hmac-perl libdynaloader-functions-perl libemail-valid-perl libexporter-tiny-perl libfile-basedir-perl libfuture-perl libhtml-parser-perl libhtml-tagset-perl libimport-into-perl libio-async-perl libio-pty-perl libio-socket-ssl-perl libipc-run-perl libipc-system-simple-perl liblist-compare-perl liblist-moreutils-perl libmailtools-perl libmodule-runtime-perl libmoo-perl libnet-dns-perl libnet-domain-tld-perl libnet-ip-perl libnet-smtp-ssl-perl libnet-ssleay-perl libparams-classify-perl libparse-debianchangelog-perl libpath-tiny-perl libreadline8 librole-tiny-perl libsqlite3-0 libssl1.1 libstrictures-perl libstruct-dumb-perl libsub-exporter-progressive-perl libsub-name-perl libsub-quote-perl libtext-levenshtein-perl libtimedate-perl libtry-tiny-perl libtype-tiny-perl liburi-perl libyaml-0-2 libyaml-libyaml-perl lintian netbase patchutils perl-openssl-defaults readline-common sbuild-build-depends-lintian-dummy:armel t1utils 0 upgraded, 63 newly installed, 0 to remove and 0 not upgraded. Need to get 8434 kB of archives. After this operation, 22.7 MB of additional disk space will be used. Get:1 copy:/<>/resolver-9Qc95f/apt_archive ./ sbuild-build-depends-lintian-dummy 0.invalid.0 [848 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 readline-common all 8.0-2 [72.4 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 libreadline8 amd64 8.0-2 [160 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 netbase all 5.6 [19.4 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 diffstat amd64 1.62-1 [33.4 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 libassuan0 amd64 2.5.3-7 [50.4 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 gpgconf amd64 2.2.17-3 [524 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 libsqlite3-0 amd64 3.29.0-1 [645 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 gpg amd64 2.2.17-3 [881 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 libapt-pkg-perl amd64 0.1.36+b1 [71.2 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 libb-hooks-op-check-perl amd64 0.22-1+b1 [11.4 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 libcapture-tiny-perl all 0.48-1 [26.0 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 libhtml-tagset-perl all 3.20-3 [12.7 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 liburi-perl all 1.76-1 [89.9 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libhtml-parser-perl amd64 3.72-3+b3 [105 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 libcgi-pm-perl all 4.44-1 [223 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-name-perl amd64 0.21-1+b3 [13.6 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libclass-accessor-perl all 0.51-1 [23.2 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 libclass-method-modifiers-perl all 2.12-1 [18.6 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 libclone-perl amd64 0.41-1+b1 [14.6 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 libdynaloader-functions-perl all 0.003-1 [12.6 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 libdevel-callchecker-perl amd64 0.008-1 [15.7 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-exporter-progressive-perl all 0.001013-1 [7588 B] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 libdevel-globaldestruction-perl all 0.14-1 [8084 B] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 libdigest-hmac-perl all 1.03+dfsg-2 [10.6 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 libssl1.1 amd64 1.1.1c-1 [1535 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 perl-openssl-defaults amd64 3 [6782 B] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-ssleay-perl amd64 1.88-1 [320 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 libio-socket-ssl-perl all 2.066-1 [210 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-smtp-ssl-perl all 1.04-1 [6184 B] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 libtimedate-perl all 2.3000-2 [42.2 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 libmailtools-perl all 2.21-1 [95.5 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-ip-perl all 1.26-2 [29.0 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-dns-perl all 1.20-1 [367 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-domain-tld-perl all 1.75-1 [33.3 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 libemail-valid-perl all 1.202-1 [23.0 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 libexporter-tiny-perl all 1.002001-1 [36.9 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 libipc-system-simple-perl all 1.25-4 [26.5 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-basedir-perl all 0.08-1 [17.7 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libfuture-perl all 0.41-1 [79.0 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libparams-classify-perl amd64 0.015-1+b1 [25.5 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libmodule-runtime-perl all 0.016-1 [19.4 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 libimport-into-perl all 1.002005-1 [11.6 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 libstruct-dumb-perl all 0.09-1 [11.1 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 libio-async-perl all 0.74-1 [268 kB] Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 libio-pty-perl amd64 1:1.08-1.1+b5 [33.7 kB] Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 libipc-run-perl all 20180523.0-1 [101 kB] Get:48 http://debian.oregonstate.edu/debian unstable/main amd64 liblist-compare-perl all 0.53-1 [68.9 kB] Get:49 http://debian.oregonstate.edu/debian unstable/main amd64 liblist-moreutils-perl amd64 0.416-1+b4 [64.2 kB] Get:50 http://debian.oregonstate.edu/debian unstable/main amd64 librole-tiny-perl all 2.000006-1 [19.4 kB] Get:51 http://debian.oregonstate.edu/debian unstable/main amd64 libstrictures-perl all 2.000006-1 [18.6 kB] Get:52 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-quote-perl all 2.006003-1 [19.7 kB] Get:53 http://debian.oregonstate.edu/debian unstable/main amd64 libmoo-perl all 2.003004-2 [57.4 kB] Get:54 http://debian.oregonstate.edu/debian unstable/main amd64 libparse-debianchangelog-perl all 1.2.0-13 [59.5 kB] Get:55 http://debian.oregonstate.edu/debian unstable/main amd64 libpath-tiny-perl all 0.108-1 [53.3 kB] Get:56 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-levenshtein-perl all 0.13-1 [11.1 kB] Get:57 http://debian.oregonstate.edu/debian unstable/main amd64 libtry-tiny-perl all 0.30-1 [23.3 kB] Get:58 http://debian.oregonstate.edu/debian unstable/main amd64 libtype-tiny-perl all 1.004004-1 [266 kB] Get:59 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-0-2 amd64 0.2.1-1 [47.2 kB] Get:60 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-libyaml-perl amd64 0.79+repack-2 [34.0 kB] Get:61 http://debian.oregonstate.edu/debian unstable/main amd64 patchutils amd64 0.3.4-2+b1 [91.4 kB] Get:62 http://debian.oregonstate.edu/debian unstable/main amd64 t1utils amd64 1.41-3 [62.3 kB] Get:63 http://debian.oregonstate.edu/debian unstable/main amd64 lintian all 2.16.0 [1189 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 8434 kB in 0s (32.3 MB/s) Selecting previously unselected package readline-common. (Reading database ... 17794 files and directories currently installed.) Preparing to unpack .../00-readline-common_8.0-2_all.deb ... Unpacking readline-common (8.0-2) ... Selecting previously unselected package libreadline8:amd64. Preparing to unpack .../01-libreadline8_8.0-2_amd64.deb ... Unpacking libreadline8:amd64 (8.0-2) ... Selecting previously unselected package netbase. Preparing to unpack .../02-netbase_5.6_all.deb ... Unpacking netbase (5.6) ... Selecting previously unselected package diffstat. Preparing to unpack .../03-diffstat_1.62-1_amd64.deb ... Unpacking diffstat (1.62-1) ... Selecting previously unselected package libassuan0:amd64. Preparing to unpack .../04-libassuan0_2.5.3-7_amd64.deb ... Unpacking libassuan0:amd64 (2.5.3-7) ... Selecting previously unselected package gpgconf. Preparing to unpack .../05-gpgconf_2.2.17-3_amd64.deb ... Unpacking gpgconf (2.2.17-3) ... Selecting previously unselected package libsqlite3-0:amd64. Preparing to unpack .../06-libsqlite3-0_3.29.0-1_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.29.0-1) ... Selecting previously unselected package gpg. Preparing to unpack .../07-gpg_2.2.17-3_amd64.deb ... Unpacking gpg (2.2.17-3) ... Selecting previously unselected package libapt-pkg-perl. Preparing to unpack .../08-libapt-pkg-perl_0.1.36+b1_amd64.deb ... Unpacking libapt-pkg-perl (0.1.36+b1) ... Selecting previously unselected package libb-hooks-op-check-perl. Preparing to unpack .../09-libb-hooks-op-check-perl_0.22-1+b1_amd64.deb ... Unpacking libb-hooks-op-check-perl (0.22-1+b1) ... Selecting previously unselected package libcapture-tiny-perl. Preparing to unpack .../10-libcapture-tiny-perl_0.48-1_all.deb ... Unpacking libcapture-tiny-perl (0.48-1) ... Selecting previously unselected package libhtml-tagset-perl. Preparing to unpack .../11-libhtml-tagset-perl_3.20-3_all.deb ... Unpacking libhtml-tagset-perl (3.20-3) ... Selecting previously unselected package liburi-perl. 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Selecting previously unselected package libclone-perl. Preparing to unpack .../18-libclone-perl_0.41-1+b1_amd64.deb ... Unpacking libclone-perl (0.41-1+b1) ... Selecting previously unselected package libdynaloader-functions-perl. Preparing to unpack .../19-libdynaloader-functions-perl_0.003-1_all.deb ... Unpacking libdynaloader-functions-perl (0.003-1) ... Selecting previously unselected package libdevel-callchecker-perl. Preparing to unpack .../20-libdevel-callchecker-perl_0.008-1_amd64.deb ... Unpacking libdevel-callchecker-perl (0.008-1) ... Selecting previously unselected package libsub-exporter-progressive-perl. Preparing to unpack .../21-libsub-exporter-progressive-perl_0.001013-1_all.deb ... Unpacking libsub-exporter-progressive-perl (0.001013-1) ... Selecting previously unselected package libdevel-globaldestruction-perl. Preparing to unpack .../22-libdevel-globaldestruction-perl_0.14-1_all.deb ... Unpacking libdevel-globaldestruction-perl (0.14-1) ... 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Unpacking libnet-smtp-ssl-perl (1.04-1) ... Selecting previously unselected package libtimedate-perl. Preparing to unpack .../29-libtimedate-perl_2.3000-2_all.deb ... Unpacking libtimedate-perl (2.3000-2) ... Selecting previously unselected package libmailtools-perl. Preparing to unpack .../30-libmailtools-perl_2.21-1_all.deb ... Unpacking libmailtools-perl (2.21-1) ... Selecting previously unselected package libnet-ip-perl. Preparing to unpack .../31-libnet-ip-perl_1.26-2_all.deb ... Unpacking libnet-ip-perl (1.26-2) ... Selecting previously unselected package libnet-dns-perl. Preparing to unpack .../32-libnet-dns-perl_1.20-1_all.deb ... Unpacking libnet-dns-perl (1.20-1) ... Selecting previously unselected package libnet-domain-tld-perl. Preparing to unpack .../33-libnet-domain-tld-perl_1.75-1_all.deb ... Unpacking libnet-domain-tld-perl (1.75-1) ... Selecting previously unselected package libemail-valid-perl. Preparing to unpack .../34-libemail-valid-perl_1.202-1_all.deb ... Unpacking libemail-valid-perl (1.202-1) ... Selecting previously unselected package libexporter-tiny-perl. Preparing to unpack .../35-libexporter-tiny-perl_1.002001-1_all.deb ... Unpacking libexporter-tiny-perl (1.002001-1) ... Selecting previously unselected package libipc-system-simple-perl. Preparing to unpack .../36-libipc-system-simple-perl_1.25-4_all.deb ... Unpacking libipc-system-simple-perl (1.25-4) ... Selecting previously unselected package libfile-basedir-perl. Preparing to unpack .../37-libfile-basedir-perl_0.08-1_all.deb ... Unpacking libfile-basedir-perl (0.08-1) ... Selecting previously unselected package libfuture-perl. Preparing to unpack .../38-libfuture-perl_0.41-1_all.deb ... Unpacking libfuture-perl (0.41-1) ... Selecting previously unselected package libparams-classify-perl. Preparing to unpack .../39-libparams-classify-perl_0.015-1+b1_amd64.deb ... Unpacking libparams-classify-perl (0.015-1+b1) ... Selecting previously unselected package libmodule-runtime-perl. 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Unpacking libmoo-perl (2.003004-2) ... Selecting previously unselected package libparse-debianchangelog-perl. Preparing to unpack .../52-libparse-debianchangelog-perl_1.2.0-13_all.deb ... Unpacking libparse-debianchangelog-perl (1.2.0-13) ... Selecting previously unselected package libpath-tiny-perl. Preparing to unpack .../53-libpath-tiny-perl_0.108-1_all.deb ... Unpacking libpath-tiny-perl (0.108-1) ... Selecting previously unselected package libtext-levenshtein-perl. Preparing to unpack .../54-libtext-levenshtein-perl_0.13-1_all.deb ... Unpacking libtext-levenshtein-perl (0.13-1) ... Selecting previously unselected package libtry-tiny-perl. Preparing to unpack .../55-libtry-tiny-perl_0.30-1_all.deb ... Unpacking libtry-tiny-perl (0.30-1) ... Selecting previously unselected package libtype-tiny-perl. Preparing to unpack .../56-libtype-tiny-perl_1.004004-1_all.deb ... Unpacking libtype-tiny-perl (1.004004-1) ... Selecting previously unselected package libyaml-0-2:amd64. Preparing to unpack .../57-libyaml-0-2_0.2.1-1_amd64.deb ... Unpacking libyaml-0-2:amd64 (0.2.1-1) ... Selecting previously unselected package libyaml-libyaml-perl. Preparing to unpack .../58-libyaml-libyaml-perl_0.79+repack-2_amd64.deb ... Unpacking libyaml-libyaml-perl (0.79+repack-2) ... Selecting previously unselected package patchutils. Preparing to unpack .../59-patchutils_0.3.4-2+b1_amd64.deb ... Unpacking patchutils (0.3.4-2+b1) ... Selecting previously unselected package t1utils. Preparing to unpack .../60-t1utils_1.41-3_amd64.deb ... Unpacking t1utils (1.41-3) ... Selecting previously unselected package lintian. Preparing to unpack .../61-lintian_2.16.0_all.deb ... Unpacking lintian (2.16.0) ... Selecting previously unselected package sbuild-build-depends-lintian-dummy:armel. Preparing to unpack .../62-sbuild-build-depends-lintian-dummy_0.invalid.0_armel.deb ... Unpacking sbuild-build-depends-lintian-dummy:armel (0.invalid.0) ... Setting up libapt-pkg-perl (0.1.36+b1) ... Setting up libstruct-dumb-perl (0.09-1) ... Setting up libdynaloader-functions-perl (0.003-1) ... Setting up libclass-method-modifiers-perl (2.12-1) ... Setting up liblist-compare-perl (0.53-1) ... Setting up libio-pty-perl (1:1.08-1.1+b5) ... Setting up libclone-perl (0.41-1+b1) ... Setting up libyaml-0-2:amd64 (0.2.1-1) ... Setting up libssl1.1:amd64 (1.1.1c-1) ... Setting up libhtml-tagset-perl (3.20-3) ... Setting up libsqlite3-0:amd64 (3.29.0-1) ... Setting up libfuture-perl (0.41-1) ... Setting up libyaml-libyaml-perl (0.79+repack-2) ... Setting up libtry-tiny-perl (0.30-1) ... Setting up perl-openssl-defaults:amd64 (3) ... Setting up libtext-levenshtein-perl (0.13-1) ... Setting up libassuan0:amd64 (2.5.3-7) ... Setting up libio-async-perl (0.74-1) ... Setting up patchutils (0.3.4-2+b1) ... Setting up libdigest-hmac-perl (1.03+dfsg-2) ... Setting up libipc-system-simple-perl (1.25-4) ... Setting up libnet-domain-tld-perl (1.75-1) ... Setting up t1utils (1.41-3) ... Setting up diffstat (1.62-1) ... Setting up libb-hooks-op-check-perl (0.22-1+b1) ... Setting up libipc-run-perl (20180523.0-1) ... Setting up libsub-exporter-progressive-perl (0.001013-1) ... Setting up libcapture-tiny-perl (0.48-1) ... Setting up libtimedate-perl (2.3000-2) ... Setting up libsub-name-perl (0.21-1+b3) ... Setting up libpath-tiny-perl (0.108-1) ... Setting up librole-tiny-perl (2.000006-1) ... Setting up libdevel-globaldestruction-perl (0.14-1) ... Setting up netbase (5.6) ... Setting up libstrictures-perl (2.000006-1) ... Setting up libsub-quote-perl (2.006003-1) ... Setting up libexporter-tiny-perl (1.002001-1) ... Setting up libclass-accessor-perl (0.51-1) ... Setting up libnet-ip-perl (1.26-2) ... Setting up readline-common (8.0-2) ... Setting up liburi-perl (1.76-1) ... Setting up libnet-ssleay-perl (1.88-1) ... Setting up libfile-basedir-perl (0.08-1) ... Setting up liblist-moreutils-perl (0.416-1+b4) ... Setting up libreadline8:amd64 (8.0-2) ... 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I: Lintian run was successful. +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ libmaus2_2.0.611-1_armel.changes: --------------------------------- Format: 1.8 Date: Fri, 12 Apr 2019 23:35:47 +0200 Source: libmaus2 Binary: libmaus2-2 libmaus2-2-dbgsym libmaus2-dev Built-For-Profiles: cross nocheck Architecture: armel Version: 2.0.611-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: libmaus2-2 - collection of data structures and algorithms for biobambam libmaus2-dev - collection of data structures and algorithms for biobambam (devel Closes: 926964 Changes: libmaus2 (2.0.611-1) unstable; urgency=medium . * Initial release (Closes: #926964) Checksums-Sha1: 4f55b502a3338d6b49a836cb16f8bd272a09109d 19854304 libmaus2-2-dbgsym_2.0.611-1_armel.deb ae9aba367e7f90dd3698e0662cb7b3152058a11f 1041312 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libmaus2_2.0.611-1_armel.buildinfo +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: libmaus2 Binary: libmaus2-2 libmaus2-dev Architecture: armel Version: 2.0.611-1 Checksums-Md5: 48126cc15c11149dd2eba186ee9de501 19854304 libmaus2-2-dbgsym_2.0.611-1_armel.deb f1c3b18515b39869e5aecbb75c68cfc2 1041312 libmaus2-2_2.0.611-1_armel.deb 1475cc0426733aa4bf552eb2e9c92da6 2801168 libmaus2-dev_2.0.611-1_armel.deb Checksums-Sha1: 4f55b502a3338d6b49a836cb16f8bd272a09109d 19854304 libmaus2-2-dbgsym_2.0.611-1_armel.deb ae9aba367e7f90dd3698e0662cb7b3152058a11f 1041312 libmaus2-2_2.0.611-1_armel.deb 6767035ac40efb4480955dcd929a30fd9fa17853 2801168 libmaus2-dev_2.0.611-1_armel.deb Checksums-Sha256: db715ddc0bfd1d66139f6fd6b697d37ceb9d230dbc71cffd2f2a2b73bc098ad1 19854304 libmaus2-2-dbgsym_2.0.611-1_armel.deb 0e381f1b7adbc1c7117bb580d19f0e98af535de895d1ca0a179cd91167b1f412 1041312 libmaus2-2_2.0.611-1_armel.deb ab4c2c0304411667e5ebb300916a1f9e9b30166209aa86d9826ad783273eb4e1 2801168 libmaus2-dev_2.0.611-1_armel.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Sun, 04 Aug 2019 20:19:59 +0000 Build-Path: /<> Installed-Build-Depends: adduser (= 3.118), apt (= 1.8.2), autoconf (= 2.69-11), automake (= 1:1.16.1-4), autopoint (= 0.19.8.1-9), autotools-dev (= 20180224.1), base-files (= 11), base-passwd (= 3.5.46), bash (= 5.0-4), binutils (= 2.32.51.20190727-1), binutils-common (= 2.32.51.20190727-1), binutils-x86-64-linux-gnu (= 2.32.51.20190727-1), bsdmainutils (= 11.1.2+b1), bsdutils (= 1:2.34-0.1), build-essential (= 12.6), bzip2 (= 1.0.6-9.2), coreutils (= 8.30-3), cpp (= 4:8.3.0-1), cpp-8 (= 8.3.0-19), d-shlibs (= 0.86), dash (= 0.5.10.2-6), debconf (= 1.5.73), debhelper (= 12.2.3), debian-archive-keyring (= 2019.1), debianutils (= 4.8.6.3), dh-autoreconf (= 19), 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Depends: libmaus2-2 (= 2.0.611-1) Section: debug Priority: optional Description: debug symbols for libmaus2-2 Build-Ids: 0a930bb3bc7b4a8044383d4b43a2442df407c92f aa90d08be6b173a28748152212b34514662fe758 c373055348a0ae07634e89d73651d1801e715753 cf800f54c21745e3b6a71f842c8275c75e955bc2 drwxr-xr-x root/root 0 2019-04-12 21:35 ./ drwxr-xr-x root/root 0 2019-04-12 21:35 ./usr/ drwxr-xr-x root/root 0 2019-04-12 21:35 ./usr/lib/ drwxr-xr-x root/root 0 2019-04-12 21:35 ./usr/lib/debug/ drwxr-xr-x root/root 0 2019-04-12 21:35 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2019-04-12 21:35 ./usr/lib/debug/.build-id/0a/ -rw-r--r-- root/root 3392 2019-04-12 21:35 ./usr/lib/debug/.build-id/0a/930bb3bc7b4a8044383d4b43a2442df407c92f.debug drwxr-xr-x root/root 0 2019-04-12 21:35 ./usr/lib/debug/.build-id/aa/ -rw-r--r-- root/root 20569536 2019-04-12 21:35 ./usr/lib/debug/.build-id/aa/90d08be6b173a28748152212b34514662fe758.debug drwxr-xr-x root/root 0 2019-04-12 21:35 ./usr/lib/debug/.build-id/c3/ -rw-r--r-- root/root 144776 2019-04-12 21:35 ./usr/lib/debug/.build-id/c3/73055348a0ae07634e89d73651d1801e715753.debug drwxr-xr-x root/root 0 2019-04-12 21:35 ./usr/lib/debug/.build-id/cf/ -rw-r--r-- root/root 4528 2019-04-12 21:35 ./usr/lib/debug/.build-id/cf/800f54c21745e3b6a71f842c8275c75e955bc2.debug drwxr-xr-x root/root 0 2019-04-12 21:35 ./usr/lib/debug/.dwz/ drwxr-xr-x root/root 0 2019-04-12 21:35 ./usr/lib/debug/.dwz/arm-linux-gnueabi/ -rw-r--r-- root/root 62064 2019-04-12 21:35 ./usr/lib/debug/.dwz/arm-linux-gnueabi/libmaus2-2.debug drwxr-xr-x root/root 0 2019-04-12 21:35 ./usr/share/ drwxr-xr-x root/root 0 2019-04-12 21:35 ./usr/share/doc/ lrwxrwxrwx root/root 0 2019-04-12 21:35 ./usr/share/doc/libmaus2-2-dbgsym -> libmaus2-2 libmaus2-2_2.0.611-1_armel.deb ------------------------------ new Debian package, version 2.0. size 1041312 bytes: control archive=1120 bytes. 832 bytes, 19 lines control 589 bytes, 7 lines md5sums 135 bytes, 3 lines shlibs 67 bytes, 2 lines triggers Package: libmaus2-2 Source: libmaus2 Version: 2.0.611-1 Architecture: armel Maintainer: Debian Med Packaging Team Installed-Size: 4243 Depends: libc6 (>= 2.28), libgcc1 (>= 1:3.5), libgomp1 (>= 4.9), libstdc++6 (>= 5.2), zlib1g (>= 1:1.1.4) Section: libs Priority: optional Homepage: https://gitlab.com/german.tischler/libmaus2 Description: collection of data structures and algorithms for biobambam Libmaus2 is a collection of data structures and algorithms. It contains . * I/O classes (single byte and UTF-8) * bitio classes (input, output and various forms of bit level manipulation) * text indexing classes (suffix and LCP array, fulltext and minute (FM), ...) * BAM sequence alignment files input/output (simple and collating) . and many lower level support classes. drwxr-xr-x root/root 0 2019-04-12 21:35 ./ drwxr-xr-x root/root 0 2019-04-12 21:35 ./usr/ drwxr-xr-x root/root 0 2019-04-12 21:35 ./usr/lib/ drwxr-xr-x root/root 0 2019-04-12 21:35 ./usr/lib/arm-linux-gnueabi/ lrwxrwxrwx root/root 0 2019-04-12 21:35 ./usr/lib/arm-linux-gnueabi/libmaus2.so.2 -> libmaus2.so.2.0.611 -rw-r--r-- root/root 4214364 2019-04-12 21:35 ./usr/lib/arm-linux-gnueabi/libmaus2.so.2.0.611 drwxr-xr-x root/root 0 2019-04-12 21:35 ./usr/lib/arm-linux-gnueabi/libmaus2/ drwxr-xr-x root/root 0 2019-04-12 21:35 ./usr/lib/arm-linux-gnueabi/libmaus2/2.0.611/ -rw-r--r-- root/root 5364 2019-04-12 21:35 ./usr/lib/arm-linux-gnueabi/libmaus2/2.0.611/libmaus2_scram_mod.so lrwxrwxrwx root/root 0 2019-04-12 21:35 ./usr/lib/arm-linux-gnueabi/libmaus2_simd_align_128.so.2 -> libmaus2_simd_align_128.so.2.0.611 -rw-r--r-- root/root 5492 2019-04-12 21:35 ./usr/lib/arm-linux-gnueabi/libmaus2_simd_align_128.so.2.0.611 lrwxrwxrwx root/root 0 2019-04-12 21:35 ./usr/lib/arm-linux-gnueabi/libmaus2_simd_align_256.so.2 -> libmaus2_simd_align_256.so.2.0.611 -rw-r--r-- root/root 55260 2019-04-12 21:35 ./usr/lib/arm-linux-gnueabi/libmaus2_simd_align_256.so.2.0.611 drwxr-xr-x root/root 0 2019-04-12 21:35 ./usr/share/ drwxr-xr-x root/root 0 2019-04-12 21:35 ./usr/share/doc/ drwxr-xr-x root/root 0 2019-04-12 21:35 ./usr/share/doc/libmaus2-2/ -rw-r--r-- root/root 158 2019-04-12 21:35 ./usr/share/doc/libmaus2-2/changelog.Debian.gz -rw-r--r-- root/root 35178 2019-04-08 09:26 ./usr/share/doc/libmaus2-2/changelog.gz -rw-r--r-- root/root 9816 2019-04-12 21:35 ./usr/share/doc/libmaus2-2/copyright libmaus2-dev_2.0.611-1_armel.deb -------------------------------- new Debian package, version 2.0. size 2801168 bytes: control archive=41644 bytes. 848 bytes, 21 lines control 149046 bytes, 1684 lines md5sums Package: libmaus2-dev Source: libmaus2 Version: 2.0.611-1 Architecture: armel Maintainer: Debian Med Packaging Team Installed-Size: 27164 Depends: libmaus2-2 (= 2.0.611-1), zlib1g-dev Section: libdevel Priority: optional Homepage: https://gitlab.com/german.tischler/libmaus2 Description: collection of data structures and algorithms for biobambam (devel) Libmaus2 is a collection of data structures and algorithms. It contains . * I/O classes (single byte and UTF-8) * bitio classes (input, output and various forms of bit level manipulation) * text indexing classes (suffix and LCP array, fulltext and minute (FM), ...) * BAM sequence alignment files input/output (simple and collating) . and many lower level support classes. . This package contains header files and static libraries. drwxr-xr-x root/root 0 2019-04-12 21:35 ./ drwxr-xr-x root/root 0 2019-04-12 21:35 ./usr/ drwxr-xr-x root/root 0 2019-04-12 21:35 ./usr/include/ drwxr-xr-x root/root 0 2019-04-12 21:35 ./usr/include/libmaus2/ -rw-r--r-- root/root 1613 2019-04-12 21:35 ./usr/include/libmaus2/LibMausConfig.hpp drwxr-xr-x root/root 0 2019-04-12 21:35 ./usr/include/libmaus2/aio/ -rw-r--r-- root/root 3007 2019-04-12 21:35 ./usr/include/libmaus2/aio/ArrayFile.hpp -rw-r--r-- root/root 4312 2019-04-12 21:35 ./usr/include/libmaus2/aio/ArrayFileContainer.hpp -rw-r--r-- root/root 3011 2019-04-12 21:35 ./usr/include/libmaus2/aio/ArrayFileSet.hpp -rw-r--r-- root/root 1582 2019-04-12 21:35 ./usr/include/libmaus2/aio/ArrayInputStream.hpp -rw-r--r-- root/root 6634 2019-04-12 21:35 ./usr/include/libmaus2/aio/ArrayInputStreamBuffer.hpp -rw-r--r-- root/root 2362 2019-04-12 21:35 ./usr/include/libmaus2/aio/ArrayInputStreamFactory.hpp -rw-r--r-- root/root 8996 2019-04-12 21:35 ./usr/include/libmaus2/aio/AsynchronousBufferReader.hpp -rw-r--r-- root/root 4318 2019-04-12 21:35 ./usr/include/libmaus2/aio/AsynchronousFastReaderBase.hpp -rw-r--r-- root/root 12350 2019-04-12 21:35 ./usr/include/libmaus2/aio/AsynchronousReader.hpp -rw-r--r-- root/root 5963 2019-04-12 21:35 ./usr/include/libmaus2/aio/AsynchronousWriter.hpp -rw-r--r-- root/root 17938 2019-04-12 21:35 ./usr/include/libmaus2/aio/BlockSynchronousOutputBuffer8.hpp -rw-r--r-- root/root 1801 2019-04-12 21:35 ./usr/include/libmaus2/aio/Buffer.hpp -rw-r--r-- root/root 11957 2019-04-12 21:35 ./usr/include/libmaus2/aio/BufferedOutput.hpp -rw-r--r-- root/root 2063 2019-04-12 21:35 ./usr/include/libmaus2/aio/CPPInputOutputStreamFactory.hpp -rw-r--r-- root/root 6776 2019-04-12 21:35 ./usr/include/libmaus2/aio/CheckedInputOutputStream.hpp -rw-r--r-- root/root 5739 2019-04-12 21:35 ./usr/include/libmaus2/aio/CheckedInputStream.hpp -rw-r--r-- root/root 2501 2019-04-12 21:35 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./usr/include/libmaus2/util/SuccinctBorderArray.hpp -rw-r--r-- root/root 8770 2019-04-12 21:35 ./usr/include/libmaus2/util/TarWriter.hpp -rw-r--r-- root/root 1342 2019-04-12 21:35 ./usr/include/libmaus2/util/TempFileContainer.hpp -rw-r--r-- root/root 2080 2019-04-12 21:35 ./usr/include/libmaus2/util/TempFileNameGenerator.hpp -rw-r--r-- root/root 1866 2019-04-12 21:35 ./usr/include/libmaus2/util/TempFileNameGeneratorState.hpp -rw-r--r-- root/root 9769 2019-04-12 21:35 ./usr/include/libmaus2/util/TempFileRemovalContainer.hpp -rw-r--r-- root/root 1191 2019-04-12 21:35 ./usr/include/libmaus2/util/Terminal.hpp -rw-r--r-- root/root 2529 2019-04-12 21:35 ./usr/include/libmaus2/util/ToUpperTable.hpp -rw-r--r-- root/root 1383 2019-04-12 21:35 ./usr/include/libmaus2/util/U.hpp -rw-r--r-- root/root 60945 2019-04-12 21:35 ./usr/include/libmaus2/util/UniqueIndex.hpp -rw-r--r-- root/root 1377 2019-04-12 21:35 ./usr/include/libmaus2/util/UnitNum.hpp -rw-r--r-- root/root 1157 2019-04-12 21:35 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./usr/include/libmaus2/wavelet/ExternalWaveletGenerator.hpp -rw-r--r-- root/root 38859 2019-04-12 21:35 ./usr/include/libmaus2/wavelet/HuffmanWaveletTree.hpp -rw-r--r-- root/root 36688 2019-04-12 21:35 ./usr/include/libmaus2/wavelet/ImpCompactHuffmanWaveletTree.hpp -rw-r--r-- root/root 4185 2019-04-12 21:35 ./usr/include/libmaus2/wavelet/ImpExternalWaveletGenerator.hpp -rw-r--r-- root/root 7601 2019-04-12 21:35 ./usr/include/libmaus2/wavelet/ImpExternalWaveletGeneratorCompactHuffman.hpp -rw-r--r-- root/root 13018 2019-04-12 21:35 ./usr/include/libmaus2/wavelet/ImpExternalWaveletGeneratorCompactHuffmanParallel.hpp -rw-r--r-- root/root 8304 2019-04-12 21:35 ./usr/include/libmaus2/wavelet/ImpExternalWaveletGeneratorHuffman.hpp -rw-r--r-- root/root 12349 2019-04-12 21:35 ./usr/include/libmaus2/wavelet/ImpExternalWaveletGeneratorHuffmanParallel.hpp -rw-r--r-- root/root 36574 2019-04-12 21:35 ./usr/include/libmaus2/wavelet/ImpHuffmanWaveletTree.hpp -rw-r--r-- root/root 5247 2019-04-12 21:35 ./usr/include/libmaus2/wavelet/ImpWaveletTree.hpp -rw-r--r-- root/root 51654 2019-04-12 21:35 ./usr/include/libmaus2/wavelet/RlToHwtBase.hpp -rw-r--r-- root/root 4892 2019-04-12 21:35 ./usr/include/libmaus2/wavelet/RlToHwtTermRequest.hpp -rw-r--r-- root/root 77261 2019-04-12 21:35 ./usr/include/libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp -rw-r--r-- root/root 74099 2019-04-12 21:35 ./usr/include/libmaus2/wavelet/Utf8ToImpHuffmanWaveletTree.hpp -rw-r--r-- root/root 89594 2019-04-12 21:35 ./usr/include/libmaus2/wavelet/WaveletTree.hpp -rw-r--r-- root/root 1251 2019-04-12 21:35 ./usr/include/libmaus2/wavelet/toWaveletTreeBits.hpp drwxr-xr-x root/root 0 2019-04-12 21:35 ./usr/lib/ drwxr-xr-x root/root 0 2019-04-12 21:35 ./usr/lib/arm-linux-gnueabi/ -rw-r--r-- root/root 13754528 2019-04-12 21:35 ./usr/lib/arm-linux-gnueabi/libmaus2.a lrwxrwxrwx root/root 0 2019-04-12 21:35 ./usr/lib/arm-linux-gnueabi/libmaus2.so -> libmaus2.so.2.0.611 -rw-r--r-- root/root 42814 2019-04-12 21:35 ./usr/lib/arm-linux-gnueabi/libmaus2_irods.a -rw-r--r-- root/root 2882 2019-04-12 21:35 ./usr/lib/arm-linux-gnueabi/libmaus2_simd_align_128.a lrwxrwxrwx root/root 0 2019-04-12 21:35 ./usr/lib/arm-linux-gnueabi/libmaus2_simd_align_128.so -> libmaus2_simd_align_128.so.2.0.611 -rw-r--r-- root/root 90044 2019-04-12 21:35 ./usr/lib/arm-linux-gnueabi/libmaus2_simd_align_256.a lrwxrwxrwx root/root 0 2019-04-12 21:35 ./usr/lib/arm-linux-gnueabi/libmaus2_simd_align_256.so -> libmaus2_simd_align_256.so.2.0.611 -rw-r--r-- root/root 149560 2019-04-12 21:35 ./usr/lib/arm-linux-gnueabi/libmaus2digests.a -rw-r--r-- root/root 72050 2019-04-12 21:35 ./usr/lib/arm-linux-gnueabi/libmaus2digests_sse4.a -rw-r--r-- root/root 46456 2019-04-12 21:35 ./usr/lib/arm-linux-gnueabi/libmaus2fftw.a -rw-r--r-- root/root 2567796 2019-04-12 21:35 ./usr/lib/arm-linux-gnueabi/libmaus2seqchksumsfactory.a drwxr-xr-x root/root 0 2019-04-12 21:35 ./usr/lib/arm-linux-gnueabi/pkgconfig/ -rw-r--r-- root/root 341 2019-04-12 21:35 ./usr/lib/arm-linux-gnueabi/pkgconfig/libmaus2.pc -rw-r--r-- root/root 309 2019-04-12 21:35 ./usr/lib/arm-linux-gnueabi/pkgconfig/libmaus2digests.pc -rw-r--r-- root/root 281 2019-04-12 21:35 ./usr/lib/arm-linux-gnueabi/pkgconfig/libmaus2fftw.pc -rw-r--r-- root/root 328 2019-04-12 21:35 ./usr/lib/arm-linux-gnueabi/pkgconfig/libmaus2seqchksumsfactory.pc drwxr-xr-x root/root 0 2019-04-12 21:35 ./usr/share/ drwxr-xr-x root/root 0 2019-04-12 21:35 ./usr/share/doc/ drwxr-xr-x root/root 0 2019-04-12 21:35 ./usr/share/doc/libmaus2-dev/ -rw-r--r-- root/root 158 2019-04-12 21:35 ./usr/share/doc/libmaus2-dev/changelog.Debian.gz -rw-r--r-- root/root 35178 2019-04-08 09:26 ./usr/share/doc/libmaus2-dev/changelog.gz -rw-r--r-- root/root 9816 2019-04-12 21:35 ./usr/share/doc/libmaus2-dev/copyright +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 1754944 Build-Time: 3079 Distribution: unstable Foreign Architectures: armel Host Architecture: armel Install-Time: 25 Job: libmaus2_2.0.611-1 Lintian: pass Machine Architecture: amd64 Package: libmaus2 Package-Time: 3116 Source-Version: 2.0.611-1 Space: 1754944 Status: successful Version: 2.0.611-1 -------------------------------------------------------------------------------- Finished at 2019-08-04T20:20:00Z Build needed 00:51:56, 1754944k disk space