sbuild (Debian sbuild) 0.73.0 (23 Dec 2016) on gcc131.bak.milne.osuosl.org +==============================================================================+ | libmaus2 2.0.611-1 (mipsel) Sun, 04 Aug 2019 13:38:13 +0000 | +==============================================================================+ Package: libmaus2 Version: 2.0.611-1 Source Version: 2.0.611-1 Distribution: unstable Machine Architecture: amd64 Host Architecture: mipsel Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/unstable-amd64-sbuild-8003ee9d-7be4-4a15-9ba4-6a3a06c88979' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://debian.oregonstate.edu/debian unstable InRelease [149 kB] Get:2 http://debian.oregonstate.edu/debian unstable/main Sources.diff/Index [27.9 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 Packages.diff/Index [27.9 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main Sources 2019-08-04-0831.20.pdiff [9188 B] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-08-04-0831.20.pdiff [25.2 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main Sources 2019-08-04-0831.20.pdiff [9188 B] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-08-04-0831.20.pdiff [25.2 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main mipsel Packages [8091 kB] Fetched 8330 kB in 2s (4114 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'libmaus2' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/libmaus2.git Please use: git clone https://salsa.debian.org/med-team/libmaus2.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 2965 kB of source archives. Get:1 http://debian.oregonstate.edu/debian unstable/main libmaus2 2.0.611-1 (dsc) [2054 B] Get:2 http://debian.oregonstate.edu/debian unstable/main libmaus2 2.0.611-1 (tar) [2958 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main libmaus2 2.0.611-1 (diff) [4628 B] Fetched 2965 kB in 0s (44.3 MB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/libmaus2-yXo5HI/libmaus2-2.0.611' with '<>' I: NOTICE: Log filtering will replace 'build/libmaus2-yXo5HI' with '<>' +------------------------------------------------------------------------------+ | Install crossbuild-essential | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: build-essential:amd64, fakeroot:amd64, crossbuild-essential-mipsel:amd64 Filtered Build-Depends: build-essential:amd64, fakeroot:amd64, crossbuild-essential-mipsel:amd64 dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-06Klqk/apt_archive/sbuild-build-depends-core-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy dpkg-scanpackages: info: Wrote 1 entries to output Packages file. Ign:1 copy:/<>/resolver-06Klqk/apt_archive ./ InRelease Get:2 copy:/<>/resolver-06Klqk/apt_archive ./ Release [957 B] Ign:3 copy:/<>/resolver-06Klqk/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-06Klqk/apt_archive ./ Sources [363 B] Get:5 copy:/<>/resolver-06Klqk/apt_archive ./ Packages [452 B] Fetched 1772 B in 0s (79.6 kB/s) Reading package lists... Reading package lists... Install core build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: binutils-mipsel-linux-gnu cpp-8-mipsel-linux-gnu cpp-mipsel-linux-gnu cross-config crossbuild-essential-mipsel dpkg-cross file g++-8-mipsel-linux-gnu g++-mipsel-linux-gnu gcc-8-cross-base gcc-8-mipsel-linux-gnu gcc-8-mipsel-linux-gnu-base gcc-9-cross-base gcc-mipsel-linux-gnu libatomic1-mipsel-cross libc6-dev-mipsel-cross libc6-mipsel-cross libconfig-auto-perl libconfig-inifiles-perl libdebian-dpkgcross-perl libfile-homedir-perl libfile-which-perl libgcc-8-dev-mipsel-cross libgcc1-mipsel-cross libgomp1-mipsel-cross libicu63 libio-string-perl liblocale-gettext-perl libmagic-mgc libmagic1 libstdc++-8-dev-mipsel-cross libstdc++6-mipsel-cross libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev-mipsel-cross sensible-utils ucf Suggested packages: binutils-doc gcc-8-locales cpp-doc binutils-multiarch g++-8-multilib-mipsel-linux-gnu gcc-8-doc libstdc++6-8-dbg-mipsel-cross gcc-8-multilib-mipsel-linux-gnu libgcc1-dbg-mipsel-cross libgomp1-dbg-mipsel-cross libitm1-dbg-mipsel-cross libatomic1-dbg-mipsel-cross libasan5-dbg-mipsel-cross liblsan0-dbg-mipsel-cross libtsan0-dbg-mipsel-cross libubsan1-dbg-mipsel-cross libmpx2-dbg-mipsel-cross libquadmath0-dbg-mipsel-cross manpages-dev autoconf automake libtool flex bison gdb-mipsel-linux-gnu gcc-doc libyaml-shell-perl Recommended packages: libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl The following NEW packages will be installed: binutils-mipsel-linux-gnu cpp-8-mipsel-linux-gnu cpp-mipsel-linux-gnu cross-config crossbuild-essential-mipsel dpkg-cross file g++-8-mipsel-linux-gnu g++-mipsel-linux-gnu gcc-8-cross-base gcc-8-mipsel-linux-gnu gcc-8-mipsel-linux-gnu-base gcc-9-cross-base gcc-mipsel-linux-gnu libatomic1-mipsel-cross libc6-dev-mipsel-cross libc6-mipsel-cross libconfig-auto-perl libconfig-inifiles-perl libdebian-dpkgcross-perl libfile-homedir-perl libfile-which-perl libgcc-8-dev-mipsel-cross libgcc1-mipsel-cross libgomp1-mipsel-cross libicu63 libio-string-perl liblocale-gettext-perl libmagic-mgc libmagic1 libstdc++-8-dev-mipsel-cross libstdc++6-mipsel-cross libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev-mipsel-cross sbuild-build-depends-core-dummy:mipsel sensible-utils ucf 0 upgraded, 43 newly installed, 0 to remove and 0 not upgraded. Need to get 40.4 MB of archives. After this operation, 147 MB of additional disk space will be used. Get:1 copy:/<>/resolver-06Klqk/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [872 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-3+b4 [18.9 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 sensible-utils all 0.0.12 [15.8 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic-mgc amd64 1:5.37-5 [253 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic1 amd64 1:5.37-5 [119 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 file amd64 1:5.37-5 [67.1 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 ucf all 3.0038+nmu1 [69.0 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 binutils-mipsel-linux-gnu amd64 2.32.51.20190727-1 [2533 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-8-mipsel-linux-gnu-base amd64 8.3.0-19cross1 [192 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-8-mipsel-linux-gnu amd64 8.3.0-19cross1 [6281 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-mipsel-linux-gnu amd64 4:8.3.0-1 [16.5 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 cross-config all 2.6.15-3 [39.9 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-8-cross-base all 8.3.0-19cross1 [187 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-cross-base all 9.1.0-8cross1 [185 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-mipsel-cross all 2.28-10cross3 [1229 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc1-mipsel-cross all 1:9.1.0-8cross1 [46.6 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 libgomp1-mipsel-cross all 9.1.0-8cross1 [79.5 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libatomic1-mipsel-cross all 9.1.0-8cross1 [6684 B] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-8-dev-mipsel-cross all 8.3.0-19cross1 [211 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-8-mipsel-linux-gnu amd64 8.3.0-19cross1 [6703 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-mipsel-linux-gnu amd64 4:8.3.0-1 [1452 B] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++6-mipsel-cross all 9.1.0-8cross1 [399 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 linux-libc-dev-mipsel-cross all 4.19.37-5cross3 [1266 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev-mipsel-cross all 2.28-10cross3 [2320 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-8-dev-mipsel-cross all 8.3.0-19cross1 [1543 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 g++-8-mipsel-linux-gnu amd64 8.3.0-19cross1 [6860 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 g++-mipsel-linux-gnu amd64 4:8.3.0-1 [1172 B] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-inifiles-perl all 3.000001-1 [51.9 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 libio-string-perl all 1.08-3 [12.3 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 libicu63 amd64 63.2-2 [8301 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 libxml2 amd64 2.9.4+dfsg1-7+b3 [687 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-1 [14.8 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-base-perl all 1.09-1 [20.4 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-perl all 1.02+dfsg-1 [59.0 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-libxml-perl amd64 2.0134+dfsg-1 [344 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-simple-perl all 2.25-1 [72.0 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-perl all 1.29-1 [67.4 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-auto-perl all 0.44-1 [19.5 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-which-perl all 1.23-1 [16.6 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-homedir-perl all 1.004-1 [42.7 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libdebian-dpkgcross-perl all 2.6.15-3 [38.7 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-cross all 2.6.15-3 [49.3 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 crossbuild-essential-mipsel all 12.6 [6564 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 40.4 MB in 1s (62.8 MB/s) Selecting previously unselected package liblocale-gettext-perl. (Reading database ... 11963 files and directories currently installed.) Preparing to unpack .../00-liblocale-gettext-perl_1.07-3+b4_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-3+b4) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.12_all.deb ... Unpacking sensible-utils (0.0.12) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../02-libmagic-mgc_1%3a5.37-5_amd64.deb ... Unpacking libmagic-mgc (1:5.37-5) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../03-libmagic1_1%3a5.37-5_amd64.deb ... Unpacking libmagic1:amd64 (1:5.37-5) ... Selecting previously unselected package file. Preparing to unpack .../04-file_1%3a5.37-5_amd64.deb ... Unpacking file (1:5.37-5) ... Selecting previously unselected package ucf. Preparing to unpack .../05-ucf_3.0038+nmu1_all.deb ... Moving old data out of the way Unpacking ucf (3.0038+nmu1) ... 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Setting up libconfig-inifiles-perl (3.000001-1) ... Setting up libfile-which-perl (1.23-1) ... Setting up libmagic-mgc (1:5.37-5) ... Setting up gcc-8-cross-base (8.3.0-19cross1) ... Setting up libmagic1:amd64 (1:5.37-5) ... Setting up libc6-mipsel-cross (2.28-10cross3) ... Setting up libxml-namespacesupport-perl (1.12-1) ... Setting up file (1:5.37-5) ... Setting up libyaml-perl (1.29-1) ... Setting up libicu63:amd64 (63.2-2) ... Setting up libxml-sax-base-perl (1.09-1) ... Setting up libio-string-perl (1.08-3) ... Setting up cross-config (2.6.15-3) ... Setting up binutils-mipsel-linux-gnu (2.32.51.20190727-1) ... Setting up gcc-9-cross-base (9.1.0-8cross1) ... Setting up gcc-8-mipsel-linux-gnu-base:amd64 (8.3.0-19cross1) ... Setting up linux-libc-dev-mipsel-cross (4.19.37-5cross3) ... Setting up sensible-utils (0.0.12) ... Setting up cpp-8-mipsel-linux-gnu (8.3.0-19cross1) ... Setting up libfile-homedir-perl (1.004-1) ... Setting up libxml2:amd64 (2.9.4+dfsg1-7+b3) ... Setting up liblocale-gettext-perl (1.07-3+b4) ... Setting up libc6-dev-mipsel-cross (2.28-10cross3) ... Setting up libatomic1-mipsel-cross (9.1.0-8cross1) ... Setting up libgcc1-mipsel-cross (1:9.1.0-8cross1) ... Setting up cpp-mipsel-linux-gnu (4:8.3.0-1) ... Setting up libgomp1-mipsel-cross (9.1.0-8cross1) ... Setting up ucf (3.0038+nmu1) ... Setting up libgcc-8-dev-mipsel-cross (8.3.0-19cross1) ... Setting up libstdc++6-mipsel-cross (9.1.0-8cross1) ... Setting up libxml-sax-perl (1.02+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libxml-libxml-perl (2.0134+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libstdc++-8-dev-mipsel-cross (8.3.0-19cross1) ... Setting up gcc-8-mipsel-linux-gnu (8.3.0-19cross1) ... Setting up gcc-mipsel-linux-gnu (4:8.3.0-1) ... Setting up libxml-simple-perl (2.25-1) ... Setting up g++-8-mipsel-linux-gnu (8.3.0-19cross1) ... Setting up libconfig-auto-perl (0.44-1) ... Setting up g++-mipsel-linux-gnu (4:8.3.0-1) ... Setting up libdebian-dpkgcross-perl (2.6.15-3) ... Setting up dpkg-cross (2.6.15-3) ... Setting up crossbuild-essential-mipsel (12.6) ... Setting up sbuild-build-depends-core-dummy:mipsel (0.invalid.0) ... Processing triggers for libc-bin (2.28-10) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (mipsel included in any) Setup apt archive ----------------- dpkg-deb: building package 'sbuild-build-depends-essential-dummy' in '/<>/resolver-06Klqk/apt_archive/sbuild-build-depends-essential-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-essential-dummy dpkg-scanpackages: info: Wrote 2 entries to output Packages file. Ign:1 copy:/<>/resolver-06Klqk/apt_archive ./ InRelease Get:2 copy:/<>/resolver-06Klqk/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-06Klqk/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-06Klqk/apt_archive ./ Sources [482 B] Get:5 copy:/<>/resolver-06Klqk/apt_archive ./ Packages [569 B] Fetched 2014 B in 0s (109 kB/s) Reading package lists... Reading package lists... Install essential build dependencies (apt-based resolver) --------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-essential-dummy:mipsel 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 840 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-06Klqk/apt_archive ./ sbuild-build-depends-essential-dummy 0.invalid.0 [840 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 840 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-essential-dummy:mipsel. (Reading database ... 15140 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-essential-dummy_0.invalid.0_mipsel.deb ... Unpacking sbuild-build-depends-essential-dummy:mipsel (0.invalid.0) ... Setting up sbuild-build-depends-essential-dummy:mipsel (0.invalid.0) ... +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: libc-dev, libstdc++-dev, debhelper (>= 12~), d-shlibs, pkg-config, zlib1g-dev Filtered Build-Depends: libc-dev, libstdc++-dev, debhelper (>= 12~), d-shlibs, pkg-config, zlib1g-dev dpkg-deb: building package 'sbuild-build-depends-libmaus2-dummy' in '/<>/resolver-06Klqk/apt_archive/sbuild-build-depends-libmaus2-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-essential-dummy sbuild-build-depends-libmaus2-dummy dpkg-scanpackages: info: Wrote 3 entries to output Packages file. Ign:1 copy:/<>/resolver-06Klqk/apt_archive ./ InRelease Get:2 copy:/<>/resolver-06Klqk/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-06Klqk/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-06Klqk/apt_archive ./ Sources [656 B] Get:5 copy:/<>/resolver-06Klqk/apt_archive ./ Packages [740 B] Fetched 2359 B in 0s (118 kB/s) Reading package lists... Reading package lists... Install libmaus2 build dependencies (apt-based resolver) -------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils d-shlibs debhelper dh-autoreconf dh-strip-nondeterminism dwz gcc-8-base:mipsel gcc-9-base:mipsel gettext gettext-base groff-base intltool-debian libarchive-zip-perl libatomic1:mipsel libbsd0 libc6:mipsel libc6-dev:mipsel libcroco3 libelf1 libfile-stripnondeterminism-perl libgcc-8-dev:mipsel libgcc1:mipsel libglib2.0-0 libgomp1:mipsel libncurses6 libpipeline1 libsigsegv2 libstdc++-8-dev:mipsel libstdc++6:mipsel libsub-override-perl libtool libuchardet0 linux-libc-dev:mipsel m4 man-db pkg-config po-debconf zlib1g:mipsel zlib1g-dev:mipsel Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff glibc-doc:mipsel libc-l10n:mipsel locales:mipsel manpages-dev:mipsel libstdc++-8-doc:mipsel libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libidn2-0:mipsel libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libgpm2 libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils d-shlibs debhelper dh-autoreconf dh-strip-nondeterminism dwz gcc-8-base:mipsel gcc-9-base:mipsel gettext gettext-base groff-base intltool-debian libarchive-zip-perl libatomic1:mipsel libbsd0 libc6:mipsel libc6-dev:mipsel libcroco3 libelf1 libfile-stripnondeterminism-perl libgcc-8-dev:mipsel libgcc1:mipsel libglib2.0-0 libgomp1:mipsel libncurses6 libpipeline1 libsigsegv2 libstdc++-8-dev:mipsel libstdc++6:mipsel libsub-override-perl libtool libuchardet0 linux-libc-dev:mipsel m4 man-db pkg-config po-debconf sbuild-build-depends-libmaus2-dummy:mipsel zlib1g:mipsel zlib1g-dev:mipsel 0 upgraded, 44 newly installed, 0 to remove and 0 not upgraded. Need to get 18.7 MB of archives. After this operation, 81.1 MB of additional disk space will be used. Get:1 copy:/<>/resolver-06Klqk/apt_archive ./ sbuild-build-depends-libmaus2-dummy 0.invalid.0 [900 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 libbsd0 amd64 0.9.1-2 [99.5 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 bsdmainutils amd64 11.1.2+b1 [191 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 libuchardet0 amd64 0.0.6-3 [64.9 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 groff-base amd64 1.22.4-3 [916 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 libpipeline1 amd64 1.5.1-2 [31.2 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 man-db amd64 2.8.6-1 [1294 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main mipsel gcc-9-base mipsel 9.1.0-10 [190 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 gettext-base amd64 0.19.8.1-9 [123 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 m4 amd64 1.4.18-2 [203 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 autoconf all 2.69-11 [341 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 automake all 1:1.16.1-4 [771 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 autopoint all 0.19.8.1-9 [434 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 d-shlibs all 0.86 [17.3 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 libtool all 2.4.6-10 [547 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 dh-autoreconf all 19 [16.9 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 libarchive-zip-perl all 1.64-1 [96.8 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-override-perl all 0.09-2 [10.2 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.4.0-1 [21.9 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 dh-strip-nondeterminism all 1.4.0-1 [14.0 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 libelf1 amd64 0.176-1.1 [161 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 dwz amd64 0.12.20190723-1 [80.6 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 libglib2.0-0 amd64 2.60.6-1 [1294 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 libcroco3 amd64 0.6.12-3 [145 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 libncurses6 amd64 6.1+20190713-2 [102 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 gettext amd64 0.19.8.1-9 [1303 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 po-debconf all 1.0.21 [248 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 debhelper all 12.2.3 [1026 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main mipsel gcc-8-base mipsel 8.3.0-19 [192 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main mipsel libgcc1 mipsel 1:9.1.0-10 [46.2 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main mipsel libc6 mipsel 2.28-10 [2429 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main mipsel libatomic1 mipsel 9.1.0-10 [6728 B] Get:36 http://debian.oregonstate.edu/debian unstable/main mipsel linux-libc-dev mipsel 4.19.37-6 [1180 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main mipsel libc6-dev mipsel 2.28-10 [2322 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main mipsel libgomp1 mipsel 9.1.0-10 [81.2 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main mipsel libgcc-8-dev mipsel 8.3.0-19 [210 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main mipsel libstdc++6 mipsel 9.1.0-10 [438 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main mipsel libstdc++-8-dev mipsel 8.3.0-19 [1539 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 pkg-config amd64 0.29-6 [63.5 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main mipsel zlib1g mipsel 1:1.2.11.dfsg-1 [90.3 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main mipsel zlib1g-dev mipsel 1:1.2.11.dfsg-1 [213 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 18.7 MB in 0s (49.9 MB/s) Selecting previously unselected package libbsd0:amd64. (Reading database ... 15140 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.9.1-2_amd64.deb ... Unpacking libbsd0:amd64 (0.9.1-2) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2+b1_amd64.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../02-libuchardet0_0.0.6-3_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../03-groff-base_1.22.4-3_amd64.deb ... Unpacking groff-base (1.22.4-3) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../04-libpipeline1_1.5.1-2_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../05-man-db_2.8.6-1_amd64.deb ... Unpacking man-db (2.8.6-1) ... Selecting previously unselected package gcc-9-base:mipsel. Preparing to unpack .../06-gcc-9-base_9.1.0-10_mipsel.deb ... Unpacking gcc-9-base:mipsel (9.1.0-10) ... Selecting previously unselected package gettext-base. Preparing to unpack .../07-gettext-base_0.19.8.1-9_amd64.deb ... Unpacking gettext-base (0.19.8.1-9) ... Selecting previously unselected package libsigsegv2:amd64. Preparing to unpack .../08-libsigsegv2_2.12-2_amd64.deb ... Unpacking libsigsegv2:amd64 (2.12-2) ... Selecting previously unselected package m4. Preparing to unpack .../09-m4_1.4.18-2_amd64.deb ... Unpacking m4 (1.4.18-2) ... Selecting previously unselected package autoconf. Preparing to unpack .../10-autoconf_2.69-11_all.deb ... Unpacking autoconf (2.69-11) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../11-autotools-dev_20180224.1_all.deb ... Unpacking autotools-dev (20180224.1) ... Selecting previously unselected package automake. Preparing to unpack .../12-automake_1%3a1.16.1-4_all.deb ... Unpacking automake (1:1.16.1-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../13-autopoint_0.19.8.1-9_all.deb ... Unpacking autopoint (0.19.8.1-9) ... Selecting previously unselected package d-shlibs. Preparing to unpack .../14-d-shlibs_0.86_all.deb ... Unpacking d-shlibs (0.86) ... Selecting previously unselected package libtool. Preparing to unpack .../15-libtool_2.4.6-10_all.deb ... Unpacking libtool (2.4.6-10) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../16-dh-autoreconf_19_all.deb ... Unpacking dh-autoreconf (19) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../17-libarchive-zip-perl_1.64-1_all.deb ... Unpacking libarchive-zip-perl (1.64-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../18-libsub-override-perl_0.09-2_all.deb ... Unpacking libsub-override-perl (0.09-2) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../19-libfile-stripnondeterminism-perl_1.4.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.4.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../20-dh-strip-nondeterminism_1.4.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.4.0-1) ... Selecting previously unselected package libelf1:amd64. Preparing to unpack .../21-libelf1_0.176-1.1_amd64.deb ... Unpacking libelf1:amd64 (0.176-1.1) ... Selecting previously unselected package dwz. Preparing to unpack .../22-dwz_0.12.20190723-1_amd64.deb ... Unpacking dwz (0.12.20190723-1) ... Selecting previously unselected package libglib2.0-0:amd64. Preparing to unpack .../23-libglib2.0-0_2.60.6-1_amd64.deb ... Unpacking libglib2.0-0:amd64 (2.60.6-1) ... Selecting previously unselected package libcroco3:amd64. Preparing to unpack .../24-libcroco3_0.6.12-3_amd64.deb ... Unpacking libcroco3:amd64 (0.6.12-3) ... Selecting previously unselected package libncurses6:amd64. Preparing to unpack .../25-libncurses6_6.1+20190713-2_amd64.deb ... Unpacking libncurses6:amd64 (6.1+20190713-2) ... Selecting previously unselected package gettext. Preparing to unpack .../26-gettext_0.19.8.1-9_amd64.deb ... Unpacking gettext (0.19.8.1-9) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../27-intltool-debian_0.35.0+20060710.5_all.deb ... Unpacking intltool-debian (0.35.0+20060710.5) ... Selecting previously unselected package po-debconf. Preparing to unpack .../28-po-debconf_1.0.21_all.deb ... Unpacking po-debconf (1.0.21) ... Selecting previously unselected package debhelper. Preparing to unpack .../29-debhelper_12.2.3_all.deb ... Unpacking debhelper (12.2.3) ... Selecting previously unselected package gcc-8-base:mipsel. Preparing to unpack .../30-gcc-8-base_8.3.0-19_mipsel.deb ... Unpacking gcc-8-base:mipsel (8.3.0-19) ... Selecting previously unselected package libgcc1:mipsel. Preparing to unpack .../31-libgcc1_1%3a9.1.0-10_mipsel.deb ... Unpacking libgcc1:mipsel (1:9.1.0-10) ... Selecting previously unselected package libc6:mipsel. Preparing to unpack .../32-libc6_2.28-10_mipsel.deb ... Unpacking libc6:mipsel (2.28-10) ... Selecting previously unselected package libatomic1:mipsel. Preparing to unpack .../33-libatomic1_9.1.0-10_mipsel.deb ... Unpacking libatomic1:mipsel (9.1.0-10) ... Selecting previously unselected package linux-libc-dev:mipsel. Preparing to unpack .../34-linux-libc-dev_4.19.37-6_mipsel.deb ... Unpacking linux-libc-dev:mipsel (4.19.37-6) ... Selecting previously unselected package libc6-dev:mipsel. Preparing to unpack .../35-libc6-dev_2.28-10_mipsel.deb ... Unpacking libc6-dev:mipsel (2.28-10) ... Selecting previously unselected package libgomp1:mipsel. Preparing to unpack .../36-libgomp1_9.1.0-10_mipsel.deb ... Unpacking libgomp1:mipsel (9.1.0-10) ... Selecting previously unselected package libgcc-8-dev:mipsel. Preparing to unpack .../37-libgcc-8-dev_8.3.0-19_mipsel.deb ... Unpacking libgcc-8-dev:mipsel (8.3.0-19) ... Selecting previously unselected package libstdc++6:mipsel. Preparing to unpack .../38-libstdc++6_9.1.0-10_mipsel.deb ... Unpacking libstdc++6:mipsel (9.1.0-10) ... Selecting previously unselected package libstdc++-8-dev:mipsel. Preparing to unpack .../39-libstdc++-8-dev_8.3.0-19_mipsel.deb ... Unpacking libstdc++-8-dev:mipsel (8.3.0-19) ... Selecting previously unselected package pkg-config. Preparing to unpack .../40-pkg-config_0.29-6_amd64.deb ... Unpacking pkg-config (0.29-6) ... Selecting previously unselected package zlib1g:mipsel. Preparing to unpack .../41-zlib1g_1%3a1.2.11.dfsg-1_mipsel.deb ... Unpacking zlib1g:mipsel (1:1.2.11.dfsg-1) ... Selecting previously unselected package zlib1g-dev:mipsel. Preparing to unpack .../42-zlib1g-dev_1%3a1.2.11.dfsg-1_mipsel.deb ... Unpacking zlib1g-dev:mipsel (1:1.2.11.dfsg-1) ... Selecting previously unselected package sbuild-build-depends-libmaus2-dummy:mipsel. Preparing to unpack .../43-sbuild-build-depends-libmaus2-dummy_0.invalid.0_mipsel.deb ... Unpacking sbuild-build-depends-libmaus2-dummy:mipsel (0.invalid.0) ... Setting up libpipeline1:amd64 (1.5.1-2) ... Setting up libarchive-zip-perl (1.64-1) ... Setting up libglib2.0-0:amd64 (2.60.6-1) ... No schema files found: doing nothing. Setting up linux-libc-dev:mipsel (4.19.37-6) ... Setting up gettext-base (0.19.8.1-9) ... Setting up autotools-dev (20180224.1) ... Setting up libncurses6:amd64 (6.1+20190713-2) ... Setting up libsigsegv2:amd64 (2.12-2) ... Setting up gcc-8-base:mipsel (8.3.0-19) ... Setting up autopoint (0.19.8.1-9) ... Setting up libcroco3:amd64 (0.6.12-3) ... Setting up pkg-config (0.29-6) ... Setting up d-shlibs (0.86) ... Setting up libuchardet0:amd64 (0.0.6-3) ... Setting up libsub-override-perl (0.09-2) ... Setting up libbsd0:amd64 (0.9.1-2) ... Setting up libelf1:amd64 (0.176-1.1) ... Setting up gcc-9-base:mipsel (9.1.0-10) ... Setting up libfile-stripnondeterminism-perl (1.4.0-1) ... Setting up gettext (0.19.8.1-9) ... Setting up libtool (2.4.6-10) ... Setting up m4 (1.4.18-2) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up autoconf (2.69-11) ... Setting up dwz (0.12.20190723-1) ... Setting up groff-base (1.22.4-3) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up po-debconf (1.0.21) ... Setting up man-db (2.8.6-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libc6:mipsel (2.28-10) ... Setting up libc6-dev:mipsel (2.28-10) ... Setting up libgcc1:mipsel (1:9.1.0-10) ... Setting up zlib1g:mipsel (1:1.2.11.dfsg-1) ... Setting up libgomp1:mipsel (9.1.0-10) ... Setting up dh-autoreconf (19) ... Setting up libatomic1:mipsel (9.1.0-10) ... Setting up libgcc-8-dev:mipsel (8.3.0-19) ... Setting up dh-strip-nondeterminism (1.4.0-1) ... Setting up zlib1g-dev:mipsel (1:1.2.11.dfsg-1) ... Setting up libstdc++6:mipsel (9.1.0-10) ... Setting up libstdc++-8-dev:mipsel (8.3.0-19) ... Setting up debhelper (12.2.3) ... Setting up sbuild-build-depends-libmaus2-dummy:mipsel (0.invalid.0) ... Processing triggers for libc-bin (2.28-10) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.9.0-8-amd64 amd64 (x86_64) Toolchain package versions: binutils_2.32.51.20190727-1 dpkg-dev_1.19.7 g++-8_8.3.0-19 gcc-8_8.3.0-19 libc6-dev_2.28-10 libstdc++-8-dev_8.3.0-19 libstdc++-8-dev-mipsel-cross_8.3.0-19cross1 libstdc++6_9.1.0-10 libstdc++6-mipsel-cross_9.1.0-8cross1 linux-libc-dev_4.19.37-6 Package versions: adduser_3.118 apt_1.8.2 autoconf_2.69-11 automake_1:1.16.1-4 autopoint_0.19.8.1-9 autotools-dev_20180224.1 base-files_11 base-passwd_3.5.46 bash_5.0-4 binutils_2.32.51.20190727-1 binutils-common_2.32.51.20190727-1 binutils-mipsel-linux-gnu_2.32.51.20190727-1 binutils-x86-64-linux-gnu_2.32.51.20190727-1 bsdmainutils_11.1.2+b1 bsdutils_1:2.34-0.1 build-essential_12.6 bzip2_1.0.6-9.2 coreutils_8.30-3 cpp_4:8.3.0-1 cpp-8_8.3.0-19 cpp-8-mipsel-linux-gnu_8.3.0-19cross1 cpp-mipsel-linux-gnu_4:8.3.0-1 cross-config_2.6.15-3 crossbuild-essential-mipsel_12.6 d-shlibs_0.86 dash_0.5.10.2-6 debconf_1.5.73 debhelper_12.2.3 debian-archive-keyring_2019.1 debianutils_4.8.6.3 dh-autoreconf_19 dh-strip-nondeterminism_1.4.0-1 diffutils_1:3.7-3 dpkg_1.19.7 dpkg-cross_2.6.15-3 dpkg-dev_1.19.7 dwz_0.12.20190723-1 e2fsprogs_1.45.3-3 fakeroot_1.23-1 fdisk_2.34-0.1 file_1:5.37-5 findutils_4.6.0+git+20190510-2 g++_4:8.3.0-1 g++-8_8.3.0-19 g++-8-mipsel-linux-gnu_8.3.0-19cross1 g++-mipsel-linux-gnu_4:8.3.0-1 gcc_4:8.3.0-1 gcc-8_8.3.0-19 gcc-8-base_8.3.0-19 gcc-8-cross-base_8.3.0-19cross1 gcc-8-mipsel-linux-gnu_8.3.0-19cross1 gcc-8-mipsel-linux-gnu-base_8.3.0-19cross1 gcc-9-base_9.1.0-10 gcc-9-cross-base_9.1.0-8cross1 gcc-mipsel-linux-gnu_4:8.3.0-1 gettext_0.19.8.1-9 gettext-base_0.19.8.1-9 gpgv_2.2.17-3 grep_3.3-1 groff-base_1.22.4-3 gzip_1.9-3 hostname_3.21 init-system-helpers_1.57 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-4 libapt-pkg5.0_1.8.2 libarchive-zip-perl_1.64-1 libasan5_9.1.0-10 libatomic1_9.1.0-10 libatomic1-mipsel-cross_9.1.0-8cross1 libattr1_1:2.4.48-4 libaudit-common_1:2.8.5-2 libaudit1_1:2.8.5-2 libbinutils_2.32.51.20190727-1 libblkid1_2.34-0.1 libbsd0_0.9.1-2 libbz2-1.0_1.0.6-9.2 libc-bin_2.28-10 libc-dev-bin_2.28-10 libc6_2.28-10 libc6-dev_2.28-10 libc6-dev-mipsel-cross_2.28-10cross3 libc6-mipsel-cross_2.28-10cross3 libcap-ng0_0.7.9-2 libcc1-0_9.1.0-10 libcom-err2_1.45.3-3 libconfig-auto-perl_0.44-1 libconfig-inifiles-perl_3.000001-1 libcroco3_0.6.12-3 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.249 libdebian-dpkgcross-perl_2.6.15-3 libdpkg-perl_1.19.7 libelf1_0.176-1.1 libext2fs2_1.45.3-3 libfakeroot_1.23-1 libfdisk1_2.34-0.1 libffi6_3.2.1-9 libfile-homedir-perl_1.004-1 libfile-stripnondeterminism-perl_1.4.0-1 libfile-which-perl_1.23-1 libgcc-8-dev_8.3.0-19 libgcc-8-dev-mipsel-cross_8.3.0-19cross1 libgcc1_1:9.1.0-10 libgcc1-mipsel-cross_1:9.1.0-8cross1 libgcrypt20_1.8.4-5 libgdbm-compat4_1.18.1-4+b1 libgdbm6_1.18.1-4+b1 libglib2.0-0_2.60.6-1 libgmp10_2:6.1.2+dfsg-4 libgnutls30_3.6.9-3 libgomp1_9.1.0-10 libgomp1-mipsel-cross_9.1.0-8cross1 libgpg-error0_1.36-7 libhogweed4_3.4.1-1 libicu63_63.2-2 libidn2-0_2.2.0-1 libio-string-perl_1.08-3 libisl19_0.20-2 libitm1_9.1.0-10 liblocale-gettext-perl_1.07-3+b4 liblsan0_9.1.0-10 liblz4-1_1.8.3-1 liblzma5_5.2.4-1 libmagic-mgc_1:5.37-5 libmagic1_1:5.37-5 libmount1_2.34-0.1 libmpc3_1.1.0-1 libmpfr6_4.0.2-1 libmpx2_8.3.0-19 libncurses6_6.1+20190713-2 libncursesw6_6.1+20190713-2 libnettle6_3.4.1-1 libp11-kit0_0.23.15-2 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpcre2-8-0_10.32-5 libpcre3_2:8.39-12 libperl5.28_5.28.1-6 libpipeline1_1.5.1-2 libquadmath0_9.1.0-10 libseccomp2_2.4.1-2 libselinux1_2.9-2 libsemanage-common_2.9-3 libsemanage1_2.9-3 libsepol1_2.9-2 libsigsegv2_2.12-2 libsmartcols1_2.34-0.1 libss2_1.45.3-3 libstdc++-8-dev_8.3.0-19 libstdc++-8-dev-mipsel-cross_8.3.0-19cross1 libstdc++6_9.1.0-10 libstdc++6-mipsel-cross_9.1.0-8cross1 libsub-override-perl_0.09-2 libsystemd0_241-7 libtasn1-6_4.14-2 libtinfo6_6.1+20190713-2 libtool_2.4.6-10 libtsan0_9.1.0-10 libubsan1_9.1.0-10 libuchardet0_0.0.6-3 libudev1_241-7 libunistring2_0.9.10-2 libuuid1_2.34-0.1 libxml-libxml-perl_2.0134+dfsg-1 libxml-namespacesupport-perl_1.12-1 libxml-sax-base-perl_1.09-1 libxml-sax-perl_1.02+dfsg-1 libxml-simple-perl_2.25-1 libxml2_2.9.4+dfsg1-7+b3 libyaml-perl_1.29-1 libzstd1_1.3.8+dfsg-3 linux-libc-dev_4.19.37-6 linux-libc-dev-mipsel-cross_4.19.37-5cross3 login_1:4.7-2 logsave_1.45.3-3 m4_1.4.18-2 make_4.2.1-1.2 man-db_2.8.6-1 mawk_1.3.3-17+b3 mount_2.34-0.1 ncurses-base_6.1+20190713-2 ncurses-bin_6.1+20190713-2 passwd_1:4.7-2 patch_2.7.6-6 perl_5.28.1-6 perl-base_5.28.1-6 perl-modules-5.28_5.28.1-6 pkg-config_0.29-6 po-debconf_1.0.21 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-essential-dummy_0.invalid.0 sbuild-build-depends-libmaus2-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12 sysvinit-utils_2.95-4 tar_1.30+dfsg-6 tzdata_2019b-1 ucf_3.0038+nmu1 util-linux_2.34-0.1 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-1 zlib1g-dev_1:1.2.11.dfsg-1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Fri Apr 12 22:22:01 2019 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./libmaus2_2.0.611-1.dsc dpkg-source: info: extracting libmaus2 in /<> dpkg-source: info: unpacking libmaus2_2.0.611.orig.tar.bz2 dpkg-source: info: unpacking libmaus2_2.0.611-1.debian.tar.xz Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.mipsel DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=POSIX LOGNAME=helmut PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1003 SCHROOT_GROUP=helmut SCHROOT_SESSION_ID=unstable-amd64-sbuild-8003ee9d-7be4-4a15-9ba4-6a3a06c88979 SCHROOT_UID=1003 SCHROOT_USER=helmut SHELL=/bin/sh USER=helmut dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package libmaus2 dpkg-buildpackage: info: source version 2.0.611-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-architecture: warning: specified GNU system type mipsel-linux-gnu does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture mipsel fakeroot debian/rules clean dh clean dh_clean debian/rules build-arch dh build-arch dh_update_autotools_config -a dh_autoreconf -a libtoolize: putting auxiliary files in '.'. libtoolize: copying file './ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'. libtoolize: copying file 'm4/libtool.m4' libtoolize: copying file 'm4/ltoptions.m4' libtoolize: copying file 'm4/ltsugar.m4' libtoolize: copying file 'm4/ltversion.m4' libtoolize: copying file 'm4/lt~obsolete.m4' configure.ac:6: installing './compile' configure.ac:8: installing './missing' src/Makefile.am: installing './depcomp' parallel-tests: installing './test-driver' dh_auto_configure -a ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/mipsel-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --host=mipsel-linux-gnu configure: WARNING: unrecognized options: --disable-maintainer-mode configure: loading site script /etc/dpkg-cross/cross-config.mipsel configure: Configuring for source in directory . checking build system type... x86_64-pc-linux-gnu checking host system type... mipsel-unknown-linux-gnu checking target system type... mipsel-unknown-linux-gnu checking how to print strings... printf checking for mipsel-linux-gnu-gcc... mipsel-linux-gnu-gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... yes checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether mipsel-linux-gnu-gcc accepts -g... yes checking for mipsel-linux-gnu-gcc option to accept ISO C89... none needed checking whether mipsel-linux-gnu-gcc understands -c and -o together... yes checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by mipsel-linux-gnu-gcc... /usr/mipsel-linux-gnu/bin/ld checking if the linker (/usr/mipsel-linux-gnu/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/mipsel-linux-gnu-nm -B checking the name lister (/usr/bin/mipsel-linux-gnu-nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-pc-linux-gnu file names to mipsel-unknown-linux-gnu format... func_convert_file_noop checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/mipsel-linux-gnu/bin/ld option to reload object files... -r checking for mipsel-linux-gnu-objdump... mipsel-linux-gnu-objdump checking how to recognize dependent libraries... pass_all checking for mipsel-linux-gnu-dlltool... no checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for mipsel-linux-gnu-ar... mipsel-linux-gnu-ar checking for archiver @FILE support... @ checking for mipsel-linux-gnu-strip... mipsel-linux-gnu-strip checking for mipsel-linux-gnu-ranlib... mipsel-linux-gnu-ranlib checking for gawk... no checking for mawk... mawk checking command to parse /usr/bin/mipsel-linux-gnu-nm -B output from mipsel-linux-gnu-gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mipsel-linux-gnu-mt... no checking for mt... no checking if : is a manifest tool... no checking how to run the C preprocessor... mipsel-linux-gnu-gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if mipsel-linux-gnu-gcc supports -fno-rtti -fno-exceptions... no checking for mipsel-linux-gnu-gcc option to produce PIC... -fPIC -DPIC checking if mipsel-linux-gnu-gcc PIC flag -fPIC -DPIC works... yes checking if mipsel-linux-gnu-gcc static flag -static works... yes checking if mipsel-linux-gnu-gcc supports -c -o file.o... yes checking if mipsel-linux-gnu-gcc supports -c -o file.o... (cached) yes checking whether the mipsel-linux-gnu-gcc linker (/usr/mipsel-linux-gnu/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for mipsel-linux-gnu-strip... (cached) mipsel-linux-gnu-strip checking for a thread-safe mkdir -p... /bin/mkdir -p checking whether make sets $(MAKE)... yes checking whether make supports the include directive... yes (GNU style) checking whether make supports nested variables... yes checking how to create a pax tar archive... gnutar checking dependency style of mipsel-linux-gnu-gcc... none checking whether we are cross compiling... yes checking for bash... /bin/bash checking for base64... /usr/bin/base64 checking for mipsel-linux-gnu-gcc... (cached) mipsel-linux-gnu-gcc checking whether we are using the GNU C compiler... (cached) yes checking whether mipsel-linux-gnu-gcc accepts -g... (cached) yes checking for mipsel-linux-gnu-gcc option to accept ISO C89... (cached) none needed checking whether mipsel-linux-gnu-gcc understands -c and -o together... (cached) yes checking for mipsel-linux-gnu-g++... mipsel-linux-gnu-g++ checking whether we are using the GNU C++ compiler... yes checking whether mipsel-linux-gnu-g++ accepts -g... yes checking how to run the C++ preprocessor... mipsel-linux-gnu-g++ -E checking for ld used by mipsel-linux-gnu-g++... /usr/mipsel-linux-gnu/bin/ld checking if the linker (/usr/mipsel-linux-gnu/bin/ld) is GNU ld... yes checking whether the mipsel-linux-gnu-g++ linker (/usr/mipsel-linux-gnu/bin/ld) supports shared libraries... yes checking for mipsel-linux-gnu-g++ option to produce PIC... -fPIC -DPIC checking if mipsel-linux-gnu-g++ PIC flag -fPIC -DPIC works... yes checking if mipsel-linux-gnu-g++ static flag -static works... yes checking if mipsel-linux-gnu-g++ supports -c -o file.o... yes checking if mipsel-linux-gnu-g++ supports -c -o file.o... (cached) yes checking whether the mipsel-linux-gnu-g++ linker (/usr/mipsel-linux-gnu/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking dependency style of mipsel-linux-gnu-g++... none checking whether host cpu is x86_64... no checking whether host os is GNU/Linux... yes checking whether we are compiling for x86_64 CPU on GNU/Linux OS ... no checking size of unsigned long... (cached) 4 checking for mipsel-linux-gnu-pkg-config... /usr/bin/mipsel-linux-gnu-pkg-config checking pkg-config is at least version 0.9.0... yes checking for zlib... yes checking for zlib... yes checking whether we can compile a zlib program... yes checking snappy.h usability... no checking snappy.h presence... no checking for snappy.h... no checking for ANSI C header files... (cached) yes checking aio.h usability... yes checking aio.h presence... yes checking for aio.h... yes checking execinfo.h usability... yes checking execinfo.h presence... yes checking for execinfo.h... yes checking windows.h usability... no checking windows.h presence... no checking for windows.h... no checking for unistd.h... (cached) yes checking linux/sysctl.h usability... yes checking linux/sysctl.h presence... yes checking for linux/sysctl.h... yes checking features.h usability... yes checking features.h presence... yes checking for features.h... yes checking for stdint.h... (cached) yes checking for dlfcn.h... (cached) yes checking for dlopen... no checking for dlerror... no checking for dlsym... no checking for dlclose... no checking for dlopen in -ldl... yes checking for dlerror in -ldl... yes checking for dlsym in -ldl... yes checking for dlclose in -ldl... yes checking whether we found the dlopen function anywhere... yes checking whether we found the dlerror function anywhere... yes checking whether we found the dlsym function anywhere... yes checking whether we found the dlclose function anywhere... yes checking whether we found all the functions required for dynamic modules somewhere... yes checking whether we need the dl library for any of the dl functions... yes checking for aio_suspend in -lrt... yes checking for backtrace... yes checking for setrlimit... yes checking for fcntl... yes checking whether the C++ compiler supports the -std=gnu++0x flag... yes checking whether the C++ compiler supports the -msse4 flag... no checking whether the C++ compiler supports the -msse2 flag... no checking whether the C++ compiler supports the -mssse3 flag... no checking whether the C++ compiler supports the -msse4.1 flag... no checking whether the C++ compiler supports the -mavx flag... no checking whether the C++ compiler supports the -mavx2 flag... no checking smmintrin.h usability... no checking smmintrin.h presence... no checking for smmintrin.h... no checking immintrin.h usability... no checking immintrin.h presence... no checking for immintrin.h... no checking whether the C++ compiler supports all intrinsics required for SIMD global alignment (X128/8 variant)... no checking whether the C++ compiler supports all intrinsics required for SIMD global alignment (X128/16 variant)... no checking whether the C++ compiler supports all intrinsics required for SIMD global alignment (Y256/8 variant)... no checking whether the C++ compiler supports all intrinsics required for SIMD global alignment (Y256/16 variant)... no checking whether the C++ compiler supports all intrinsics required for one to many global alignment using AVX2... no checking cstdint usability... yes checking cstdint presence... yes checking for cstdint... yes checking whether the C++ compiler supports the -msse4 flag... no checking for mmap... yes checking for mmap flag MAP_HUGETLB... yes checking whether the C++ compiler supports the -W flag... yes checking whether the C++ compiler supports the -Wall flag... yes checking whether the C++ compiler supports the -Wnon-virtual-dtor flag... yes checking for OpenMP flag of C++ compiler... -fopenmp checking whether std::unique_ptr exists... yes checking whether std::shared_ptr exists... yes checking whether std::unordered_map exists... yes checking whether std::unordered_set exists... yes checking whether std::move exists... yes checking for sys/types.h... (cached) yes checking sys/vfs.h usability... yes checking sys/vfs.h presence... yes checking for sys/vfs.h... yes checking for windows.h... (cached) no checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking regex.h usability... yes checking regex.h presence... yes checking for regex.h... yes checking whether byte ordering is bigendian... (cached) no checking whether we can compile a program using posix regex... yes checking whether we can compile a program using statfs... yes checking whether struct statfs has field f_iosize... no checking whether struct statfs has field f_bsize... yes checking whether the C++ compiler supports the -pthread flag... yes checking for pthread spin lock support... yes checking for sem_post... yes checking for sem_wait... yes checking for sem_init... yes checking for sem_destroy... yes checking for sem_timedwait... yes checking for pthread_setname_np... yes checking for pthread_set_name_np... no checking for pthread_getname_np... yes checking for pthread_get_name_np... no checking for pthread_setaffinity_np... yes checking for pthread_attr_setaffinity_np... yes checking for prctl... yes checking for pthread_setaffinity_np support... checking whether the C++ compiler supports __sync_fetch_and_add... no checking whether the C++ compiler supports synchronous lock operations... yes checking whether posix_memalign is present... yes checking whether getpagesize is present... yes checking whether MSG_CMSG_CLOEXEC is defined... yes checking for libarchive... no checking libkern/OSAtomic.h usability... no checking libkern/OSAtomic.h presence... no checking for libkern/OSAtomic.h... no checking for unsigned __int128... no checking whether we can compile a program using the gmp library... no checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... 64 checking for _LARGEFILE_SOURCE value needed for large files... no checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating libmaus2.pc config.status: creating libmaus2digests.pc config.status: creating libmaus2irods.pc config.status: creating libmaus2seqchksumsfactory.pc config.status: creating libmaus2fftw.pc config.status: creating ubuntu.sh config.status: creating src/libmaus2/LibMausConfig.hpp config.status: creating test/Makefile config.status: creating config.h config.status: executing libtool commands config.status: executing depfiles commands configure: WARNING: unrecognized options: --disable-maintainer-mode dh_auto_build -a make -j1 make[1]: Entering directory '/<>' make all-recursive make[2]: Entering directory '/<>' Making all in src make[3]: Entering directory '/<>/src' mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testAIO-testAIO.o `test -f 'test/testAIO.cpp' || echo './'`test/testAIO.cpp /bin/bash ../libtool --tag=CXX --mode=compile mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/la-StaticInitialization.lo `test -f 'libmaus2/StaticInitialization.cpp' || echo './'`libmaus2/StaticInitialization.cpp libtool: compile: mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/StaticInitialization.cpp -fPIC -DPIC -o libmaus2/.libs/la-StaticInitialization.o libtool: compile: mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall 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-D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/lcs/la-AlignerFactory.lo `test -f 'libmaus2/lcs/AlignerFactory.cpp' || echo './'`libmaus2/lcs/AlignerFactory.cpp libtool: compile: mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/lcs/AlignerFactory.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/la-AlignerFactory.o In file included from libmaus2/lcs/AlignerFactory.cpp:29: ./libmaus2/lcs/NP.hpp: In instantiation of ‘int64_t libmaus2::lcs::NP::npTemplate(iter_a, iter_a, iter_b, iter_b) [with iter_a = const unsigned char*; iter_b = const unsigned char*; bool self_check = true; int64_t = long long int]’: ./libmaus2/lcs/NP.hpp:116:53: required from ‘int64_t libmaus2::lcs::NP::np(iter_a, iter_a, iter_b, iter_b, bool) [with iter_a = const unsigned char*; iter_b = const unsigned char*; int64_t = long long int]’ ./libmaus2/lcs/NP.hpp:104:23: required from here ./libmaus2/lcs/NP.hpp:908:46: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘long long int’ [-Wsign-compare] if ( AlignmentTraceContainer::capacity() <= std::min(an,bn)+ed ) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ ./libmaus2/lcs/NP.hpp: In instantiation of ‘int64_t libmaus2::lcs::NP::npTemplate(iter_a, iter_a, iter_b, iter_b) [with iter_a = const unsigned char*; iter_b = const unsigned char*; bool self_check = false; int64_t = long long int]’: ./libmaus2/lcs/NP.hpp:118:54: required from ‘int64_t libmaus2::lcs::NP::np(iter_a, iter_a, iter_b, iter_b, bool) [with iter_a = const unsigned char*; iter_b = const unsigned char*; int64_t = long long int]’ ./libmaus2/lcs/NP.hpp:104:23: required from here ./libmaus2/lcs/NP.hpp:908:46: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘long long int’ [-Wsign-compare] libtool: compile: mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/lcs/AlignerFactory.cpp -o libmaus2/lcs/la-AlignerFactory.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall 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-fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/lcs/BandedAlignerFactory.cpp -o libmaus2/lcs/la-BandedAlignerFactory.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/aio/la-InputStreamInstance.lo `test -f 'libmaus2/aio/InputStreamInstance.cpp' || echo './'`libmaus2/aio/InputStreamInstance.cpp libtool: compile: mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong 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libmaus2/lcs/la-DalignerNP.lo `test -f 'libmaus2/lcs/DalignerNP.cpp' || echo './'`libmaus2/lcs/DalignerNP.cpp libtool: compile: mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/lcs/DalignerNP.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/la-DalignerNP.o libtool: compile: mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/lcs/DalignerNP.cpp -o libmaus2/lcs/la-DalignerNP.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/aio/la-OutputStreamInstance.lo `test -f 'libmaus2/aio/OutputStreamInstance.cpp' || echo './'`libmaus2/aio/OutputStreamInstance.cpp libtool: compile: mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/aio/OutputStreamInstance.cpp -fPIC -DPIC -o libmaus2/aio/.libs/la-OutputStreamInstance.o libtool: compile: mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/aio/OutputStreamInstance.cpp -o libmaus2/aio/la-OutputStreamInstance.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/aio/la-OutputStreamFactoryContainer.lo `test -f 'libmaus2/aio/OutputStreamFactoryContainer.cpp' || echo './'`libmaus2/aio/OutputStreamFactoryContainer.cpp libtool: compile: mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/aio/OutputStreamFactoryContainer.cpp -fPIC -DPIC -o libmaus2/aio/.libs/la-OutputStreamFactoryContainer.o libtool: compile: mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/aio/OutputStreamFactoryContainer.cpp -o libmaus2/aio/la-OutputStreamFactoryContainer.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/dazzler/align/la-TraceBlock.lo `test -f 'libmaus2/dazzler/align/TraceBlock.cpp' || echo './'`libmaus2/dazzler/align/TraceBlock.cpp libtool: compile: mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/dazzler/align/TraceBlock.cpp -fPIC -DPIC -o libmaus2/dazzler/align/.libs/la-TraceBlock.o libtool: compile: mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/dazzler/align/TraceBlock.cpp -o libmaus2/dazzler/align/la-TraceBlock.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/dazzler/align/la-ApproximateRun.lo `test -f 'libmaus2/dazzler/align/ApproximateRun.cpp' || echo './'`libmaus2/dazzler/align/ApproximateRun.cpp libtool: compile: mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/dazzler/align/ApproximateRun.cpp -fPIC -DPIC -o libmaus2/dazzler/align/.libs/la-ApproximateRun.o libtool: compile: mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/dazzler/align/ApproximateRun.cpp -o libmaus2/dazzler/align/la-ApproximateRun.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W 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libmaus2/digest/.libs/la-SHA3_256.o libtool: compile: mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/digest/SHA3_256.cpp -o libmaus2/digest/la-SHA3_256.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/fastx/la-DNAIndexMetaDataBigBand.lo `test -f 'libmaus2/fastx/DNAIndexMetaDataBigBand.cpp' || echo './'`libmaus2/fastx/DNAIndexMetaDataBigBand.cpp libtool: compile: mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/fastx/DNAIndexMetaDataBigBand.cpp -fPIC -DPIC -o libmaus2/fastx/.libs/la-DNAIndexMetaDataBigBand.o libtool: compile: mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/fastx/DNAIndexMetaDataBigBand.cpp -o libmaus2/fastx/la-DNAIndexMetaDataBigBand.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/fastx/la-DNAIndexMetaDataBigBandBiDir.lo `test -f 'libmaus2/fastx/DNAIndexMetaDataBigBandBiDir.cpp' || echo './'`libmaus2/fastx/DNAIndexMetaDataBigBandBiDir.cpp libtool: compile: mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/fastx/DNAIndexMetaDataBigBandBiDir.cpp -fPIC -DPIC -o libmaus2/fastx/.libs/la-DNAIndexMetaDataBigBandBiDir.o libtool: compile: mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/fastx/DNAIndexMetaDataBigBandBiDir.cpp -o libmaus2/fastx/la-DNAIndexMetaDataBigBandBiDir.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/lcs/la-EnvelopeFragment.lo `test -f 'libmaus2/lcs/EnvelopeFragment.cpp' || echo './'`libmaus2/lcs/EnvelopeFragment.cpp libtool: compile: 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-D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/rank/la-DNARankBiDirRange.lo `test -f 'libmaus2/rank/DNARankBiDirRange.cpp' || echo './'`libmaus2/rank/DNARankBiDirRange.cpp libtool: compile: mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/rank/DNARankBiDirRange.cpp -fPIC -DPIC -o libmaus2/rank/.libs/la-DNARankBiDirRange.o libtool: compile: mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x 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-pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/lcs/la-NNPTraceContainer.lo `test -f 'libmaus2/lcs/NNPTraceContainer.cpp' || echo './'`libmaus2/lcs/NNPTraceContainer.cpp libtool: compile: mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/lcs/NNPTraceContainer.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/la-NNPTraceContainer.o libtool: compile: mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/lcs/NNPTraceContainer.cpp -o libmaus2/lcs/la-NNPTraceContainer.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/lcs/la-NNPAlignResult.lo `test -f 'libmaus2/lcs/NNPAlignResult.cpp' || echo './'`libmaus2/lcs/NNPAlignResult.cpp libtool: compile: mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/lcs/NNPAlignResult.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/la-NNPAlignResult.o libtool: compile: mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/lcs/NNPAlignResult.cpp -o libmaus2/lcs/la-NNPAlignResult.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/suffixsort/bwtb3m/la-MergeStrategyMergeGapRequest.lo `test -f 'libmaus2/suffixsort/bwtb3m/MergeStrategyMergeGapRequest.cpp' || echo './'`libmaus2/suffixsort/bwtb3m/MergeStrategyMergeGapRequest.cpp libtool: compile: mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/MergeStrategyMergeGapRequest.cpp -fPIC -DPIC -o libmaus2/suffixsort/bwtb3m/.libs/la-MergeStrategyMergeGapRequest.o libtool: compile: mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/MergeStrategyMergeGapRequest.cpp -o libmaus2/suffixsort/bwtb3m/la-MergeStrategyMergeGapRequest.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/suffixsort/bwtb3m/la-BwtMergeSort.lo `test -f 'libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp' || echo './'`libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp libtool: compile: mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp -fPIC -DPIC -o libmaus2/suffixsort/bwtb3m/.libs/la-BwtMergeSort.o In file included from /usr/mipsel-linux-gnu/include/c++/8/cassert:44, from ./libmaus2/suffixsort/divsufsort.hpp:32, from ./libmaus2/util/Utf8String.hpp:27, from ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:25, from ./libmaus2/wavelet/RlToHwtBase.hpp:30, from ./libmaus2/wavelet/RlToHwtTermRequest.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:37, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: ./libmaus2/wavelet/RlToHwtBase.hpp: In instantiation of ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtSmallAlphabet(const string&, const libmaus2::huffman::HuffmanTree&, uint64_t) [with entity_type = unsigned char; bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::__cxx11::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1398:105: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwt(const string&, const string&, std::__cxx11::string, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::__cxx11::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:5104:65: required from ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeBwt(const libmaus2::suffixsort::bwtb3m::BwtMergeSortOptions&, std::ostream*) [with input_types_type = libmaus2::suffixsort::ByteInputTypes; std::ostream = std::basic_ostream]’ libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:45:71: required from here ./libmaus2/wavelet/RlToHwtBase.hpp:809:46: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] assert ( symtonodesp-symtonodes.begin() == symtonodevecoffsets[sym] ); ./libmaus2/wavelet/RlToHwtBase.hpp: In instantiation of ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtSmallAlphabet(const string&, const libmaus2::huffman::HuffmanTree&, uint64_t) [with entity_type = short unsigned int; bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::__cxx11::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1407:106: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwt(const string&, const string&, std::__cxx11::string, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::__cxx11::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:5104:65: required from ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeBwt(const libmaus2::suffixsort::bwtb3m::BwtMergeSortOptions&, std::ostream*) [with input_types_type = libmaus2::suffixsort::ByteInputTypes; std::ostream = std::basic_ostream]’ libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:45:71: required from here ./libmaus2/wavelet/RlToHwtBase.hpp:809:46: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] ./libmaus2/wavelet/RlToHwtBase.hpp: In instantiation of ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtSmallAlphabet(const string&, const libmaus2::huffman::HuffmanTree&, uint64_t) [with entity_type = unsigned int; bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::__cxx11::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1416:106: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwt(const string&, const string&, std::__cxx11::string, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::__cxx11::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:5104:65: required from ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeBwt(const libmaus2::suffixsort::bwtb3m::BwtMergeSortOptions&, std::ostream*) [with input_types_type = libmaus2::suffixsort::ByteInputTypes; std::ostream = std::basic_ostream]’ libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:45:71: required from here ./libmaus2/wavelet/RlToHwtBase.hpp:809:46: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] ./libmaus2/wavelet/RlToHwtBase.hpp: In instantiation of ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtSmallAlphabet(const string&, const libmaus2::huffman::HuffmanTree&, uint64_t) [with entity_type = long long unsigned int; bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::__cxx11::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1425:106: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwt(const string&, const string&, std::__cxx11::string, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::__cxx11::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:5104:65: required from ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeBwt(const libmaus2::suffixsort::bwtb3m::BwtMergeSortOptions&, std::ostream*) [with input_types_type = libmaus2::suffixsort::ByteInputTypes; std::ostream = std::basic_ostream]’ libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:45:71: required from here ./libmaus2/wavelet/RlToHwtBase.hpp:809:46: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] ./libmaus2/wavelet/RlToHwtBase.hpp: In instantiation of ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtSmallAlphabet(const string&, const libmaus2::huffman::HuffmanTree&, uint64_t) [with entity_type = unsigned char; bool _utf8_input_type = false; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::__cxx11::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1398:105: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwt(const string&, const string&, std::__cxx11::string, uint64_t) [with bool _utf8_input_type = false; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::__cxx11::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:5111:66: required from ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeBwt(const libmaus2::suffixsort::bwtb3m::BwtMergeSortOptions&, std::ostream*) [with input_types_type = libmaus2::suffixsort::ByteInputTypes; std::ostream = std::basic_ostream]’ libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:45:71: required from here ./libmaus2/wavelet/RlToHwtBase.hpp:809:46: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] ./libmaus2/wavelet/RlToHwtBase.hpp: In instantiation of ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtSmallAlphabet(const string&, const libmaus2::huffman::HuffmanTree&, uint64_t) [with entity_type = short unsigned int; bool _utf8_input_type = false; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::__cxx11::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1407:106: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwt(const string&, const string&, std::__cxx11::string, uint64_t) [with bool _utf8_input_type = false; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::__cxx11::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:5111:66: required from ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeBwt(const libmaus2::suffixsort::bwtb3m::BwtMergeSortOptions&, std::ostream*) [with input_types_type = libmaus2::suffixsort::ByteInputTypes; std::ostream = std::basic_ostream]’ libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:45:71: required from here ./libmaus2/wavelet/RlToHwtBase.hpp:809:46: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] ./libmaus2/wavelet/RlToHwtBase.hpp: In instantiation of ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtSmallAlphabet(const string&, const libmaus2::huffman::HuffmanTree&, uint64_t) [with entity_type = unsigned int; bool _utf8_input_type = false; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::__cxx11::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1416:106: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwt(const string&, const string&, std::__cxx11::string, uint64_t) [with bool _utf8_input_type = false; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::__cxx11::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:5111:66: required from ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeBwt(const libmaus2::suffixsort::bwtb3m::BwtMergeSortOptions&, std::ostream*) [with input_types_type = libmaus2::suffixsort::ByteInputTypes; std::ostream = std::basic_ostream]’ libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:45:71: required from here ./libmaus2/wavelet/RlToHwtBase.hpp:809:46: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] ./libmaus2/wavelet/RlToHwtBase.hpp: In instantiation of ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtSmallAlphabet(const string&, const libmaus2::huffman::HuffmanTree&, uint64_t) [with entity_type = long long unsigned int; bool _utf8_input_type = false; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::__cxx11::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1425:106: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwt(const string&, const string&, std::__cxx11::string, uint64_t) [with bool _utf8_input_type = false; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::__cxx11::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:5111:66: required from ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeBwt(const libmaus2::suffixsort::bwtb3m::BwtMergeSortOptions&, std::ostream*) [with input_types_type = libmaus2::suffixsort::ByteInputTypes; std::ostream = std::basic_ostream]’ libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:45:71: required from here ./libmaus2/wavelet/RlToHwtBase.hpp:809:46: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] ./libmaus2/wavelet/RlToHwtBase.hpp: In instantiation of ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtTermSmallAlphabet(const std::vector >&, const string&, uint64_t, uint64_t, uint64_t) [with entity_type = unsigned char; bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::__cxx11::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1656:111: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtTerm(const std::vector >&, const string&, std::__cxx11::string, std::__cxx11::string, uint64_t, uint64_t, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::__cxx11::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’ ./libmaus2/wavelet/RlToHwtTermRequest.hpp:118:67: required from ‘libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtTermRequest::dispatch() [with rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >]’ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:1225:102: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::ensureWaveletTreeGenerated(const libmaus2::suffixsort::BwtMergeBlockSortResult&, std::ostream*) [with input_types_type = libmaus2::suffixsort::ByteInputTypes; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::ostream = std::basic_ostream]’ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:1289:105: required from ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::GapArrayComputationResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeGapArray(libmaus2::util::TempFileNameGenerator&, const string&, uint64_t, uint64_t, uint64_t, uint64_t, uint64_t, const libmaus2::suffixsort::BwtMergeBlockSortResult&, const std::vector >&, libmaus2::lf::DArray*, const std::vector&, uint64_t, std::ostream*, int) [with input_types_type = libmaus2::suffixsort::ByteInputTypes; std::__cxx11::string = std::__cxx11::basic_string; uint64_t = long long unsigned int; std::ostream = std::basic_ostream]’ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:1460:28: required from ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::GapArrayComputationResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeGapArray(libmaus2::util::TempFileNameGenerator&, const string&, uint64_t, const libmaus2::suffixsort::bwtb3m::MergeStrategyMergeGapRequest&, const std::vector >&, libmaus2::lf::DArray*, uint64_t, std::ostream*, int) [with input_types_type = libmaus2::suffixsort::ByteInputTypes; std::__cxx11::string = std::__cxx11::basic_string; uint64_t = long long unsigned int; std::ostream = std::basic_ostream]’ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:2244:61: required from ‘static void libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::mergeBlocks(libmaus2::util::TempFileNameGenerator&, libmaus2::suffixsort::bwtb3m::MergeStrategyMergeInternalBlock&, std::__cxx11::string, uint64_t, uint64_t, uint64_t, uint64_t, const std::map&, uint64_t, const string&, std::ostream*, int) [with input_types_type = libmaus2::suffixsort::ByteInputTypes; std::__cxx11::string = std::__cxx11::basic_string; uint64_t = long long unsigned int; std::ostream = std::basic_ostream]’ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:4964:19: required from ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeBwt(const libmaus2::suffixsort::bwtb3m::BwtMergeSortOptions&, std::ostream*) [with input_types_type = libmaus2::suffixsort::ByteInputTypes; std::ostream = std::basic_ostream]’ libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:45:71: required from here ./libmaus2/wavelet/RlToHwtBase.hpp:234:46: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] assert ( symtonodesp-symtonodes.begin() == symtonodevecoffsets[sym] ); ./libmaus2/wavelet/RlToHwtBase.hpp: In instantiation of ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtTermSmallAlphabet(const std::vector >&, const string&, uint64_t, uint64_t, uint64_t) [with entity_type = short unsigned int; bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::__cxx11::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1662:112: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtTerm(const std::vector >&, const string&, std::__cxx11::string, std::__cxx11::string, uint64_t, uint64_t, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::__cxx11::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’ ./libmaus2/wavelet/RlToHwtTermRequest.hpp:118:67: required from ‘libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtTermRequest::dispatch() [with rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >]’ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:1225:102: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::ensureWaveletTreeGenerated(const libmaus2::suffixsort::BwtMergeBlockSortResult&, std::ostream*) [with input_types_type = libmaus2::suffixsort::ByteInputTypes; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::ostream = std::basic_ostream]’ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:1289:105: required from ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::GapArrayComputationResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeGapArray(libmaus2::util::TempFileNameGenerator&, const string&, uint64_t, uint64_t, uint64_t, uint64_t, uint64_t, const libmaus2::suffixsort::BwtMergeBlockSortResult&, const std::vector >&, libmaus2::lf::DArray*, const std::vector&, uint64_t, std::ostream*, int) [with input_types_type = libmaus2::suffixsort::ByteInputTypes; std::__cxx11::string = std::__cxx11::basic_string; uint64_t = long long unsigned int; std::ostream = std::basic_ostream]’ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:1460:28: required from ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::GapArrayComputationResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeGapArray(libmaus2::util::TempFileNameGenerator&, const string&, uint64_t, const libmaus2::suffixsort::bwtb3m::MergeStrategyMergeGapRequest&, const std::vector >&, libmaus2::lf::DArray*, uint64_t, std::ostream*, int) [with input_types_type = libmaus2::suffixsort::ByteInputTypes; std::__cxx11::string = std::__cxx11::basic_string; uint64_t = long long unsigned int; std::ostream = std::basic_ostream]’ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:2244:61: required from ‘static void libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::mergeBlocks(libmaus2::util::TempFileNameGenerator&, libmaus2::suffixsort::bwtb3m::MergeStrategyMergeInternalBlock&, std::__cxx11::string, uint64_t, uint64_t, uint64_t, uint64_t, const std::map&, uint64_t, const string&, std::ostream*, int) [with input_types_type = libmaus2::suffixsort::ByteInputTypes; std::__cxx11::string = std::__cxx11::basic_string; uint64_t = long long unsigned int; std::ostream = std::basic_ostream]’ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:4964:19: required from ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeBwt(const libmaus2::suffixsort::bwtb3m::BwtMergeSortOptions&, std::ostream*) [with input_types_type = libmaus2::suffixsort::ByteInputTypes; std::ostream = std::basic_ostream]’ libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:45:71: required from here ./libmaus2/wavelet/RlToHwtBase.hpp:234:46: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] ./libmaus2/wavelet/RlToHwtBase.hpp: In instantiation of ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtTermSmallAlphabet(const std::vector >&, const string&, uint64_t, uint64_t, uint64_t) [with entity_type = unsigned int; bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::__cxx11::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1668:112: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtTerm(const std::vector >&, const string&, std::__cxx11::string, std::__cxx11::string, uint64_t, uint64_t, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::__cxx11::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’ ./libmaus2/wavelet/RlToHwtTermRequest.hpp:118:67: required from ‘libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtTermRequest::dispatch() [with rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >]’ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:1225:102: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::ensureWaveletTreeGenerated(const libmaus2::suffixsort::BwtMergeBlockSortResult&, std::ostream*) [with input_types_type = libmaus2::suffixsort::ByteInputTypes; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::ostream = std::basic_ostream]’ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:1289:105: required from ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::GapArrayComputationResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeGapArray(libmaus2::util::TempFileNameGenerator&, const string&, uint64_t, uint64_t, uint64_t, uint64_t, uint64_t, const libmaus2::suffixsort::BwtMergeBlockSortResult&, const std::vector >&, libmaus2::lf::DArray*, const std::vector&, uint64_t, std::ostream*, int) [with input_types_type = libmaus2::suffixsort::ByteInputTypes; std::__cxx11::string = std::__cxx11::basic_string; uint64_t = long long unsigned int; std::ostream = std::basic_ostream]’ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:1460:28: required from ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::GapArrayComputationResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeGapArray(libmaus2::util::TempFileNameGenerator&, const string&, uint64_t, const libmaus2::suffixsort::bwtb3m::MergeStrategyMergeGapRequest&, const std::vector >&, libmaus2::lf::DArray*, uint64_t, std::ostream*, int) [with input_types_type = libmaus2::suffixsort::ByteInputTypes; std::__cxx11::string = std::__cxx11::basic_string; uint64_t = long long unsigned int; std::ostream = std::basic_ostream]’ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:2244:61: required from ‘static void libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::mergeBlocks(libmaus2::util::TempFileNameGenerator&, libmaus2::suffixsort::bwtb3m::MergeStrategyMergeInternalBlock&, std::__cxx11::string, uint64_t, uint64_t, uint64_t, uint64_t, const std::map&, uint64_t, const string&, std::ostream*, int) [with input_types_type = libmaus2::suffixsort::ByteInputTypes; std::__cxx11::string = std::__cxx11::basic_string; uint64_t = long long unsigned int; std::ostream = std::basic_ostream]’ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:4964:19: required from ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeBwt(const libmaus2::suffixsort::bwtb3m::BwtMergeSortOptions&, std::ostream*) [with input_types_type = libmaus2::suffixsort::ByteInputTypes; std::ostream = std::basic_ostream]’ libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:45:71: required from here ./libmaus2/wavelet/RlToHwtBase.hpp:234:46: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] ./libmaus2/wavelet/RlToHwtBase.hpp: In instantiation of ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtTermSmallAlphabet(const std::vector >&, const string&, uint64_t, uint64_t, uint64_t) [with entity_type = long long unsigned int; bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::__cxx11::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1674:112: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtTerm(const std::vector >&, const string&, std::__cxx11::string, std::__cxx11::string, uint64_t, uint64_t, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::__cxx11::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’ ./libmaus2/wavelet/RlToHwtTermRequest.hpp:118:67: required from ‘libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtTermRequest::dispatch() [with rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >]’ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:1225:102: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::ensureWaveletTreeGenerated(const libmaus2::suffixsort::BwtMergeBlockSortResult&, std::ostream*) [with input_types_type = libmaus2::suffixsort::ByteInputTypes; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::ostream = std::basic_ostream]’ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:1289:105: required from ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::GapArrayComputationResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeGapArray(libmaus2::util::TempFileNameGenerator&, const string&, uint64_t, uint64_t, uint64_t, uint64_t, uint64_t, const libmaus2::suffixsort::BwtMergeBlockSortResult&, const std::vector >&, libmaus2::lf::DArray*, const std::vector&, uint64_t, std::ostream*, int) [with input_types_type = libmaus2::suffixsort::ByteInputTypes; std::__cxx11::string = std::__cxx11::basic_string; uint64_t = long long unsigned int; std::ostream = std::basic_ostream]’ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:1460:28: required from ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::GapArrayComputationResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeGapArray(libmaus2::util::TempFileNameGenerator&, const string&, uint64_t, const libmaus2::suffixsort::bwtb3m::MergeStrategyMergeGapRequest&, const std::vector >&, libmaus2::lf::DArray*, uint64_t, std::ostream*, int) [with input_types_type = libmaus2::suffixsort::ByteInputTypes; std::__cxx11::string = std::__cxx11::basic_string; uint64_t = long long unsigned int; std::ostream = std::basic_ostream]’ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:2244:61: required from ‘static void libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::mergeBlocks(libmaus2::util::TempFileNameGenerator&, libmaus2::suffixsort::bwtb3m::MergeStrategyMergeInternalBlock&, std::__cxx11::string, uint64_t, uint64_t, uint64_t, uint64_t, const std::map&, uint64_t, const string&, std::ostream*, int) [with input_types_type = libmaus2::suffixsort::ByteInputTypes; std::__cxx11::string = std::__cxx11::basic_string; uint64_t = long long unsigned int; std::ostream = std::basic_ostream]’ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:4964:19: required from ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeBwt(const libmaus2::suffixsort::bwtb3m::BwtMergeSortOptions&, std::ostream*) [with input_types_type = libmaus2::suffixsort::ByteInputTypes; std::ostream = std::basic_ostream]’ libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:45:71: required from here ./libmaus2/wavelet/RlToHwtBase.hpp:234:46: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] ./libmaus2/wavelet/RlToHwtBase.hpp: In instantiation of ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtTermSmallAlphabet(const std::vector >&, const string&, uint64_t, uint64_t, uint64_t) [with entity_type = unsigned char; bool _utf8_input_type = false; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::__cxx11::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1656:111: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtTerm(const std::vector >&, const string&, std::__cxx11::string, std::__cxx11::string, uint64_t, uint64_t, uint64_t) [with bool _utf8_input_type = false; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::__cxx11::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’ ./libmaus2/wavelet/RlToHwtTermRequest.hpp:125:68: required from ‘libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtTermRequest::dispatch() [with rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >]’ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:1225:102: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::ensureWaveletTreeGenerated(const libmaus2::suffixsort::BwtMergeBlockSortResult&, std::ostream*) [with input_types_type = libmaus2::suffixsort::ByteInputTypes; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::ostream = std::basic_ostream]’ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:1289:105: required from ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::GapArrayComputationResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeGapArray(libmaus2::util::TempFileNameGenerator&, const string&, uint64_t, uint64_t, uint64_t, uint64_t, uint64_t, const libmaus2::suffixsort::BwtMergeBlockSortResult&, const std::vector >&, libmaus2::lf::DArray*, const std::vector&, uint64_t, std::ostream*, int) [with input_types_type = libmaus2::suffixsort::ByteInputTypes; std::__cxx11::string = std::__cxx11::basic_string; uint64_t = long long unsigned int; std::ostream = std::basic_ostream]’ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:1460:28: required from ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::GapArrayComputationResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeGapArray(libmaus2::util::TempFileNameGenerator&, const string&, uint64_t, const libmaus2::suffixsort::bwtb3m::MergeStrategyMergeGapRequest&, const std::vector >&, libmaus2::lf::DArray*, uint64_t, std::ostream*, int) [with input_types_type = libmaus2::suffixsort::ByteInputTypes; std::__cxx11::string = std::__cxx11::basic_string; uint64_t = long long unsigned int; std::ostream = std::basic_ostream]’ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:2244:61: required from ‘static void libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::mergeBlocks(libmaus2::util::TempFileNameGenerator&, libmaus2::suffixsort::bwtb3m::MergeStrategyMergeInternalBlock&, std::__cxx11::string, uint64_t, uint64_t, uint64_t, uint64_t, const std::map&, uint64_t, const string&, std::ostream*, int) [with input_types_type = libmaus2::suffixsort::ByteInputTypes; std::__cxx11::string = std::__cxx11::basic_string; uint64_t = long long unsigned int; std::ostream = std::basic_ostream]’ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:4964:19: required from ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeBwt(const libmaus2::suffixsort::bwtb3m::BwtMergeSortOptions&, std::ostream*) [with input_types_type = libmaus2::suffixsort::ByteInputTypes; std::ostream = std::basic_ostream]’ libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:45:71: required from here ./libmaus2/wavelet/RlToHwtBase.hpp:234:46: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] ./libmaus2/wavelet/RlToHwtBase.hpp: In instantiation of ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtTermSmallAlphabet(const std::vector >&, const string&, uint64_t, uint64_t, uint64_t) [with entity_type = short unsigned int; bool _utf8_input_type = false; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::__cxx11::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1662:112: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtTerm(const std::vector >&, const string&, std::__cxx11::string, std::__cxx11::string, uint64_t, uint64_t, uint64_t) [with bool _utf8_input_type = false; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::__cxx11::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’ ./libmaus2/wavelet/RlToHwtTermRequest.hpp:125:68: required from ‘libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtTermRequest::dispatch() [with rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >]’ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:1225:102: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::ensureWaveletTreeGenerated(const libmaus2::suffixsort::BwtMergeBlockSortResult&, std::ostream*) [with input_types_type = libmaus2::suffixsort::ByteInputTypes; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::ostream = std::basic_ostream]’ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:1289:105: required from ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::GapArrayComputationResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeGapArray(libmaus2::util::TempFileNameGenerator&, const string&, uint64_t, uint64_t, uint64_t, uint64_t, uint64_t, const libmaus2::suffixsort::BwtMergeBlockSortResult&, const std::vector >&, libmaus2::lf::DArray*, const std::vector&, uint64_t, std::ostream*, int) [with input_types_type = libmaus2::suffixsort::ByteInputTypes; std::__cxx11::string = std::__cxx11::basic_string; uint64_t = long long unsigned int; std::ostream = std::basic_ostream]’ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:1460:28: required from ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::GapArrayComputationResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeGapArray(libmaus2::util::TempFileNameGenerator&, const string&, uint64_t, const libmaus2::suffixsort::bwtb3m::MergeStrategyMergeGapRequest&, const std::vector >&, libmaus2::lf::DArray*, uint64_t, std::ostream*, int) [with input_types_type = libmaus2::suffixsort::ByteInputTypes; std::__cxx11::string = std::__cxx11::basic_string; uint64_t = long long unsigned int; std::ostream = std::basic_ostream]’ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:2244:61: required from ‘static void libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::mergeBlocks(libmaus2::util::TempFileNameGenerator&, libmaus2::suffixsort::bwtb3m::MergeStrategyMergeInternalBlock&, std::__cxx11::string, uint64_t, uint64_t, uint64_t, uint64_t, const std::map&, uint64_t, const string&, std::ostream*, int) [with input_types_type = libmaus2::suffixsort::ByteInputTypes; std::__cxx11::string = std::__cxx11::basic_string; uint64_t = long long unsigned int; std::ostream = std::basic_ostream]’ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:4964:19: required from ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeBwt(const libmaus2::suffixsort::bwtb3m::BwtMergeSortOptions&, std::ostream*) [with input_types_type = libmaus2::suffixsort::ByteInputTypes; std::ostream = std::basic_ostream]’ libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:45:71: required from here ./libmaus2/wavelet/RlToHwtBase.hpp:234:46: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] ./libmaus2/wavelet/RlToHwtBase.hpp: In instantiation of ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtTermSmallAlphabet(const std::vector >&, const string&, uint64_t, uint64_t, uint64_t) [with entity_type = unsigned int; bool _utf8_input_type = false; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::__cxx11::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1668:112: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtTerm(const std::vector >&, const string&, std::__cxx11::string, std::__cxx11::string, uint64_t, uint64_t, uint64_t) [with bool _utf8_input_type = false; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::__cxx11::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’ ./libmaus2/wavelet/RlToHwtTermRequest.hpp:125:68: required from ‘libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtTermRequest::dispatch() [with rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >]’ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:1225:102: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::ensureWaveletTreeGenerated(const libmaus2::suffixsort::BwtMergeBlockSortResult&, std::ostream*) [with input_types_type = libmaus2::suffixsort::ByteInputTypes; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::ostream = std::basic_ostream]’ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:1289:105: required from ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::GapArrayComputationResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeGapArray(libmaus2::util::TempFileNameGenerator&, const string&, uint64_t, uint64_t, uint64_t, uint64_t, uint64_t, const libmaus2::suffixsort::BwtMergeBlockSortResult&, const std::vector >&, libmaus2::lf::DArray*, const std::vector&, uint64_t, std::ostream*, int) [with input_types_type = libmaus2::suffixsort::ByteInputTypes; std::__cxx11::string = std::__cxx11::basic_string; uint64_t = long long unsigned int; std::ostream = std::basic_ostream]’ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:1460:28: required from ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::GapArrayComputationResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeGapArray(libmaus2::util::TempFileNameGenerator&, const string&, uint64_t, const libmaus2::suffixsort::bwtb3m::MergeStrategyMergeGapRequest&, const std::vector >&, libmaus2::lf::DArray*, uint64_t, std::ostream*, int) [with input_types_type = libmaus2::suffixsort::ByteInputTypes; std::__cxx11::string = std::__cxx11::basic_string; uint64_t = long long unsigned int; std::ostream = std::basic_ostream]’ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:2244:61: required from ‘static void libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::mergeBlocks(libmaus2::util::TempFileNameGenerator&, libmaus2::suffixsort::bwtb3m::MergeStrategyMergeInternalBlock&, std::__cxx11::string, uint64_t, uint64_t, uint64_t, uint64_t, const std::map&, uint64_t, const string&, std::ostream*, int) [with input_types_type = libmaus2::suffixsort::ByteInputTypes; std::__cxx11::string = std::__cxx11::basic_string; uint64_t = long long unsigned int; std::ostream = std::basic_ostream]’ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:4964:19: required from ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeBwt(const libmaus2::suffixsort::bwtb3m::BwtMergeSortOptions&, std::ostream*) [with input_types_type = libmaus2::suffixsort::ByteInputTypes; std::ostream = std::basic_ostream]’ libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:45:71: required from here ./libmaus2/wavelet/RlToHwtBase.hpp:234:46: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] ./libmaus2/wavelet/RlToHwtBase.hpp: In instantiation of ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtTermSmallAlphabet(const std::vector >&, const string&, uint64_t, uint64_t, uint64_t) [with entity_type = long long unsigned int; bool _utf8_input_type = false; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::__cxx11::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1674:112: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtTerm(const std::vector >&, const string&, std::__cxx11::string, std::__cxx11::string, uint64_t, uint64_t, uint64_t) [with bool _utf8_input_type = false; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::__cxx11::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’ ./libmaus2/wavelet/RlToHwtTermRequest.hpp:125:68: required from ‘libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtTermRequest::dispatch() [with rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >]’ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:1225:102: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::ensureWaveletTreeGenerated(const libmaus2::suffixsort::BwtMergeBlockSortResult&, std::ostream*) [with input_types_type = libmaus2::suffixsort::ByteInputTypes; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::ostream = std::basic_ostream]’ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:1289:105: required from ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::GapArrayComputationResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeGapArray(libmaus2::util::TempFileNameGenerator&, const string&, uint64_t, uint64_t, uint64_t, uint64_t, uint64_t, const libmaus2::suffixsort::BwtMergeBlockSortResult&, const std::vector >&, libmaus2::lf::DArray*, const std::vector&, uint64_t, std::ostream*, int) [with input_types_type = libmaus2::suffixsort::ByteInputTypes; std::__cxx11::string = std::__cxx11::basic_string; uint64_t = long long unsigned int; std::ostream = std::basic_ostream]’ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:1460:28: required from ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::GapArrayComputationResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeGapArray(libmaus2::util::TempFileNameGenerator&, const string&, uint64_t, const libmaus2::suffixsort::bwtb3m::MergeStrategyMergeGapRequest&, const std::vector >&, libmaus2::lf::DArray*, uint64_t, std::ostream*, int) [with input_types_type = libmaus2::suffixsort::ByteInputTypes; std::__cxx11::string = std::__cxx11::basic_string; uint64_t = long long unsigned int; std::ostream = std::basic_ostream]’ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:2244:61: required from ‘static void libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::mergeBlocks(libmaus2::util::TempFileNameGenerator&, libmaus2::suffixsort::bwtb3m::MergeStrategyMergeInternalBlock&, std::__cxx11::string, uint64_t, uint64_t, uint64_t, uint64_t, const std::map&, uint64_t, const string&, std::ostream*, int) [with input_types_type = libmaus2::suffixsort::ByteInputTypes; std::__cxx11::string = std::__cxx11::basic_string; uint64_t = long long unsigned int; std::ostream = std::basic_ostream]’ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:4964:19: required from ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeBwt(const libmaus2::suffixsort::bwtb3m::BwtMergeSortOptions&, std::ostream*) [with input_types_type = libmaus2::suffixsort::ByteInputTypes; std::ostream = std::basic_ostream]’ libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:45:71: required from here ./libmaus2/wavelet/RlToHwtBase.hpp:234:46: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] libtool: compile: mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp -o libmaus2/suffixsort/bwtb3m/la-BwtMergeSort.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/suffixsort/bwtb3m/la-BwtComputeSSA.lo `test -f 'libmaus2/suffixsort/bwtb3m/BwtComputeSSA.cpp' || echo './'`libmaus2/suffixsort/bwtb3m/BwtComputeSSA.cpp libtool: compile: mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtComputeSSA.cpp -fPIC -DPIC -o libmaus2/suffixsort/bwtb3m/.libs/la-BwtComputeSSA.o libtool: compile: mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtComputeSSA.cpp -o libmaus2/suffixsort/bwtb3m/la-BwtComputeSSA.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/fastx/la-FastAToCompact4BigBand.lo `test -f 'libmaus2/fastx/FastAToCompact4BigBand.cpp' || echo './'`libmaus2/fastx/FastAToCompact4BigBand.cpp libtool: compile: mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/fastx/FastAToCompact4BigBand.cpp -fPIC -DPIC -o libmaus2/fastx/.libs/la-FastAToCompact4BigBand.o libtool: compile: mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/fastx/FastAToCompact4BigBand.cpp -o libmaus2/fastx/la-FastAToCompact4BigBand.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/suffixsort/bwtb3m/la-BwtMergeSortResult.lo `test -f 'libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.cpp' || echo './'`libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.cpp libtool: compile: mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.cpp -fPIC -DPIC -o libmaus2/suffixsort/bwtb3m/.libs/la-BwtMergeSortResult.o In file included from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.hpp:31, from libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.cpp:18: ./libmaus2/lcp/WaveletLCP.hpp: In instantiation of ‘static libmaus2::lcp::WaveletLCPResult::unique_ptr_type libmaus2::lcp::WaveletLCP::computeLCP(const lf_type*, uint64_t, bool, std::ostream*) [with lf_type = libmaus2::lf::ImpCompactHuffmanWaveletLFTemplate >; libmaus2::lcp::WaveletLCPResult::unique_ptr_type = std::unique_ptr >; uint64_t = long long unsigned int; std::ostream = std::basic_ostream]’: libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.cpp:265:131: required from here ./libmaus2/lcp/WaveletLCP.hpp:44:20: warning: unused parameter ‘rnumthreads’ [-Wunused-parameter] uint64_t const rnumthreads, ~~~~~~~~~~~~~~~^~~~~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/cassert:44, from ./libmaus2/suffixsort/divsufsort.hpp:32, from ./libmaus2/util/Utf8String.hpp:27, from ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:25, from ./libmaus2/wavelet/RlToHwtBase.hpp:30, from libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.cpp:19: ./libmaus2/wavelet/RlToHwtBase.hpp: In instantiation of ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtSmallAlphabet(const string&, const libmaus2::huffman::HuffmanTree&, uint64_t) [with entity_type = unsigned char; bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::__cxx11::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1398:105: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwt(const string&, const string&, std::__cxx11::string, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::__cxx11::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’ libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.cpp:136:53: required from here ./libmaus2/wavelet/RlToHwtBase.hpp:809:46: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] assert ( symtonodesp-symtonodes.begin() == symtonodevecoffsets[sym] ); ./libmaus2/wavelet/RlToHwtBase.hpp: In instantiation of ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtSmallAlphabet(const string&, const libmaus2::huffman::HuffmanTree&, uint64_t) [with entity_type = short unsigned int; bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::__cxx11::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1407:106: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwt(const string&, const string&, std::__cxx11::string, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::__cxx11::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’ libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.cpp:136:53: required from here ./libmaus2/wavelet/RlToHwtBase.hpp:809:46: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] ./libmaus2/wavelet/RlToHwtBase.hpp: In instantiation of ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtSmallAlphabet(const string&, const libmaus2::huffman::HuffmanTree&, uint64_t) [with entity_type = unsigned int; bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::__cxx11::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1416:106: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwt(const string&, const string&, std::__cxx11::string, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::__cxx11::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’ libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.cpp:136:53: required from here ./libmaus2/wavelet/RlToHwtBase.hpp:809:46: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] ./libmaus2/wavelet/RlToHwtBase.hpp: In instantiation of ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtSmallAlphabet(const string&, const libmaus2::huffman::HuffmanTree&, uint64_t) [with entity_type = long long unsigned int; bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::__cxx11::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1425:106: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwt(const string&, const string&, std::__cxx11::string, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::__cxx11::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’ libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.cpp:136:53: required from here ./libmaus2/wavelet/RlToHwtBase.hpp:809:46: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] ./libmaus2/wavelet/RlToHwtBase.hpp: In instantiation of ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtSmallAlphabet(const string&, const libmaus2::huffman::HuffmanTree&, uint64_t) [with entity_type = unsigned char; bool _utf8_input_type = false; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::__cxx11::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1398:105: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwt(const string&, const string&, std::__cxx11::string, uint64_t) [with bool _utf8_input_type = false; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::__cxx11::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’ libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.cpp:143:54: required from here ./libmaus2/wavelet/RlToHwtBase.hpp:809:46: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] ./libmaus2/wavelet/RlToHwtBase.hpp: In instantiation of ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtSmallAlphabet(const string&, const libmaus2::huffman::HuffmanTree&, uint64_t) [with entity_type = short unsigned int; bool _utf8_input_type = false; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::__cxx11::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1407:106: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwt(const string&, const string&, std::__cxx11::string, uint64_t) [with bool _utf8_input_type = false; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::__cxx11::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’ libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.cpp:143:54: required from here ./libmaus2/wavelet/RlToHwtBase.hpp:809:46: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] ./libmaus2/wavelet/RlToHwtBase.hpp: In instantiation of ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtSmallAlphabet(const string&, const libmaus2::huffman::HuffmanTree&, uint64_t) [with entity_type = unsigned int; bool _utf8_input_type = false; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::__cxx11::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1416:106: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwt(const string&, const string&, std::__cxx11::string, uint64_t) [with bool _utf8_input_type = false; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::__cxx11::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’ libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.cpp:143:54: required from here ./libmaus2/wavelet/RlToHwtBase.hpp:809:46: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] ./libmaus2/wavelet/RlToHwtBase.hpp: In instantiation of ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtSmallAlphabet(const string&, const libmaus2::huffman::HuffmanTree&, uint64_t) [with entity_type = long long unsigned int; bool _utf8_input_type = false; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::__cxx11::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1425:106: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwt(const string&, const string&, std::__cxx11::string, uint64_t) [with bool _utf8_input_type = false; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::__cxx11::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’ libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.cpp:143:54: required from here ./libmaus2/wavelet/RlToHwtBase.hpp:809:46: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] libtool: compile: mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.cpp -o libmaus2/suffixsort/bwtb3m/la-BwtMergeSortResult.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/util/la-HugePages.lo `test -f 'libmaus2/util/HugePages.cpp' || echo './'`libmaus2/util/HugePages.cpp libtool: compile: mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/util/HugePages.cpp -fPIC -DPIC -o libmaus2/util/.libs/la-HugePages.o libtool: compile: mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/util/HugePages.cpp -o libmaus2/util/la-HugePages.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/lz/la-ZlibInterface.lo `test -f 'libmaus2/lz/ZlibInterface.cpp' || echo './'`libmaus2/lz/ZlibInterface.cpp libtool: compile: mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/lz/ZlibInterface.cpp -fPIC -DPIC -o libmaus2/lz/.libs/la-ZlibInterface.o libtool: compile: mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/lz/ZlibInterface.cpp -o libmaus2/lz/la-ZlibInterface.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/suffixsort/bwtb3m/la-BwtSelectSSA.lo `test -f 'libmaus2/suffixsort/bwtb3m/BwtSelectSSA.cpp' || echo './'`libmaus2/suffixsort/bwtb3m/BwtSelectSSA.cpp libtool: compile: mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtSelectSSA.cpp -fPIC -DPIC -o libmaus2/suffixsort/bwtb3m/.libs/la-BwtSelectSSA.o libtool: compile: mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtSelectSSA.cpp -o libmaus2/suffixsort/bwtb3m/la-BwtSelectSSA.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/aio/la-FileRemoval.lo `test -f 'libmaus2/aio/FileRemoval.cpp' || echo './'`libmaus2/aio/FileRemoval.cpp libtool: compile: mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/aio/FileRemoval.cpp -fPIC -DPIC -o libmaus2/aio/.libs/la-FileRemoval.o libtool: compile: mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/aio/FileRemoval.cpp -o libmaus2/aio/la-FileRemoval.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/rank/la-DNARankMEM.lo `test -f 'libmaus2/rank/DNARankMEM.cpp' || echo './'`libmaus2/rank/DNARankMEM.cpp libtool: compile: mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/rank/DNARankMEM.cpp -fPIC -DPIC -o libmaus2/rank/.libs/la-DNARankMEM.o libtool: compile: mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/rank/DNARankMEM.cpp -o libmaus2/rank/la-DNARankMEM.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/lcs/la-ChainAddQueueElement.lo `test -f 'libmaus2/lcs/ChainAddQueueElement.cpp' || echo './'`libmaus2/lcs/ChainAddQueueElement.cpp libtool: compile: mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/lcs/ChainAddQueueElement.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/la-ChainAddQueueElement.o libtool: compile: mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/lcs/ChainAddQueueElement.cpp -o libmaus2/lcs/la-ChainAddQueueElement.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/lcs/la-Chain.lo `test -f 'libmaus2/lcs/Chain.cpp' || echo './'`libmaus2/lcs/Chain.cpp libtool: compile: mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/lcs/Chain.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/la-Chain.o libtool: compile: mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/lcs/Chain.cpp -o libmaus2/lcs/la-Chain.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/lcs/la-ChainNode.lo `test -f 'libmaus2/lcs/ChainNode.cpp' || echo './'`libmaus2/lcs/ChainNode.cpp libtool: compile: mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/lcs/ChainNode.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/la-ChainNode.o libtool: compile: mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/lcs/ChainNode.cpp -o libmaus2/lcs/la-ChainNode.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat 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-I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/util/PathTools.cpp -fPIC -DPIC -o libmaus2/util/.libs/la-PathTools.o libtool: compile: mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/util/PathTools.cpp -o libmaus2/util/la-PathTools.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/exception/la-LibMausException.lo `test -f 'libmaus2/exception/LibMausException.cpp' || echo './'`libmaus2/exception/LibMausException.cpp libtool: compile: mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/exception/LibMausException.cpp -fPIC -DPIC -o libmaus2/exception/.libs/la-LibMausException.o libtool: compile: mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/exception/LibMausException.cpp -o libmaus2/exception/la-LibMausException.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=link mipsel-linux-gnu-g++ -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -version-info 2:611:0 -Wl,-z,relro -o libmaus2.la -rpath /usr/lib/mipsel-linux-gnu libmaus2/la-StaticInitialization.lo libmaus2/autoarray/la-AutoArray.lo libmaus2/bitio/la-CompactArray.lo libmaus2/rank/la-RankTable.lo libmaus2/rank/la-log2table.lo libmaus2/fastx/la-isFastQ.lo libmaus2/wavelet/la-toWaveletTreeBits.lo libmaus2/suffixsort/la-divsufsort.lo libmaus2/rmq/la-FischerSystematicSuccinctRMQ.lo libmaus2/lcp/la-OracleLCP.lo libmaus2/util/la-StackTrace.lo 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-Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/lcs/SimdX86GlobalAlignmentX128_8.cpp -o libmaus2/lcs/simd_align_128_la-SimdX86GlobalAlignmentX128_8.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/lcs/simd_align_128_la-SimdX86GlobalAlignmentX128_16.lo `test -f 'libmaus2/lcs/SimdX86GlobalAlignmentX128_16.cpp' || echo './'`libmaus2/lcs/SimdX86GlobalAlignmentX128_16.cpp libtool: compile: mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/lcs/SimdX86GlobalAlignmentX128_16.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/simd_align_128_la-SimdX86GlobalAlignmentX128_16.o libtool: compile: mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/lcs/SimdX86GlobalAlignmentX128_16.cpp -o libmaus2/lcs/simd_align_128_la-SimdX86GlobalAlignmentX128_16.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=link mipsel-linux-gnu-g++ -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -version-info 2:611:0 -Wl,-z,relro -o libmaus2_simd_align_128.la -rpath /usr/lib/mipsel-linux-gnu libmaus2/lcs/simd_align_128_la-SimdX86GlobalAlignmentConstants128.lo libmaus2/lcs/simd_align_128_la-SimdX86BandedGlobalAlignmentX128_8.lo libmaus2/lcs/simd_align_128_la-SimdX86BandedGlobalAlignmentX128_16.lo libmaus2/lcs/simd_align_128_la-SimdX86GlobalAlignmentX128_8.lo libmaus2/lcs/simd_align_128_la-SimdX86GlobalAlignmentX128_16.lo -lrt -L/usr/lib/mipsel-linux-gnu -lz libtool: link: mipsel-linux-gnu-g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc-cross/mipsel-linux-gnu/8/../../../../mipsel-linux-gnu/lib/../lib/crti.o /usr/lib/gcc-cross/mipsel-linux-gnu/8/crtbeginS.o libmaus2/lcs/.libs/simd_align_128_la-SimdX86GlobalAlignmentConstants128.o libmaus2/lcs/.libs/simd_align_128_la-SimdX86BandedGlobalAlignmentX128_8.o libmaus2/lcs/.libs/simd_align_128_la-SimdX86BandedGlobalAlignmentX128_16.o libmaus2/lcs/.libs/simd_align_128_la-SimdX86GlobalAlignmentX128_8.o libmaus2/lcs/.libs/simd_align_128_la-SimdX86GlobalAlignmentX128_16.o -lrt -L/usr/lib/mipsel-linux-gnu -lz -L/usr/lib/gcc-cross/mipsel-linux-gnu/8 -L/usr/lib/gcc-cross/mipsel-linux-gnu/8/../../../../mipsel-linux-gnu/lib/../lib -L/lib/mipsel-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc-cross/mipsel-linux-gnu/8/../../../../mipsel-linux-gnu/lib -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc-cross/mipsel-linux-gnu/8/crtendS.o /usr/lib/gcc-cross/mipsel-linux-gnu/8/../../../../mipsel-linux-gnu/lib/../lib/crtn.o -pthread -fopenmp -g -O2 -fstack-protector-strong -pthread -pthread -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,relro -pthread -fopenmp -Wl,-soname -Wl,libmaus2_simd_align_128.so.2 -o .libs/libmaus2_simd_align_128.so.2.0.611 libtool: link: (cd ".libs" && rm -f "libmaus2_simd_align_128.so.2" && ln -s "libmaus2_simd_align_128.so.2.0.611" "libmaus2_simd_align_128.so.2") libtool: link: (cd ".libs" && rm -f "libmaus2_simd_align_128.so" && ln -s "libmaus2_simd_align_128.so.2.0.611" "libmaus2_simd_align_128.so") libtool: link: mipsel-linux-gnu-ar cru .libs/libmaus2_simd_align_128.a libmaus2/lcs/simd_align_128_la-SimdX86GlobalAlignmentConstants128.o libmaus2/lcs/simd_align_128_la-SimdX86BandedGlobalAlignmentX128_8.o libmaus2/lcs/simd_align_128_la-SimdX86BandedGlobalAlignmentX128_16.o libmaus2/lcs/simd_align_128_la-SimdX86GlobalAlignmentX128_8.o libmaus2/lcs/simd_align_128_la-SimdX86GlobalAlignmentX128_16.o mipsel-linux-gnu-ar: `u' modifier ignored since `D' is the default (see `U') libtool: link: mipsel-linux-gnu-ranlib .libs/libmaus2_simd_align_128.a libtool: link: ( cd ".libs" && rm -f "libmaus2_simd_align_128.la" && ln -s "../libmaus2_simd_align_128.la" "libmaus2_simd_align_128.la" ) /bin/bash ../libtool --tag=CXX --mode=compile mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/lcs/simd_align_256_la-SimdX86GlobalAlignmentConstants256.lo `test -f 'libmaus2/lcs/SimdX86GlobalAlignmentConstants256.cpp' || echo './'`libmaus2/lcs/SimdX86GlobalAlignmentConstants256.cpp libtool: compile: mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/lcs/SimdX86GlobalAlignmentConstants256.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/simd_align_256_la-SimdX86GlobalAlignmentConstants256.o libtool: compile: mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/lcs/SimdX86GlobalAlignmentConstants256.cpp -o libmaus2/lcs/simd_align_256_la-SimdX86GlobalAlignmentConstants256.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/lcs/simd_align_256_la-SimdX86BandedGlobalAlignmentY256_8.lo `test -f 'libmaus2/lcs/SimdX86BandedGlobalAlignmentY256_8.cpp' || echo './'`libmaus2/lcs/SimdX86BandedGlobalAlignmentY256_8.cpp libtool: compile: mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/lcs/SimdX86BandedGlobalAlignmentY256_8.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/simd_align_256_la-SimdX86BandedGlobalAlignmentY256_8.o libtool: compile: mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/lcs/SimdX86BandedGlobalAlignmentY256_8.cpp -o libmaus2/lcs/simd_align_256_la-SimdX86BandedGlobalAlignmentY256_8.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/lcs/simd_align_256_la-SimdX86BandedGlobalAlignmentY256_16.lo `test -f 'libmaus2/lcs/SimdX86BandedGlobalAlignmentY256_16.cpp' || echo './'`libmaus2/lcs/SimdX86BandedGlobalAlignmentY256_16.cpp libtool: compile: mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/lcs/SimdX86BandedGlobalAlignmentY256_16.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/simd_align_256_la-SimdX86BandedGlobalAlignmentY256_16.o libtool: compile: mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/lcs/SimdX86BandedGlobalAlignmentY256_16.cpp -o libmaus2/lcs/simd_align_256_la-SimdX86BandedGlobalAlignmentY256_16.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/lcs/simd_align_256_la-SimdX86BandedGlobalAlignmentScoreY256_16.lo `test -f 'libmaus2/lcs/SimdX86BandedGlobalAlignmentScoreY256_16.cpp' || echo './'`libmaus2/lcs/SimdX86BandedGlobalAlignmentScoreY256_16.cpp libtool: compile: mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/lcs/SimdX86BandedGlobalAlignmentScoreY256_16.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/simd_align_256_la-SimdX86BandedGlobalAlignmentScoreY256_16.o libtool: compile: mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/lcs/SimdX86BandedGlobalAlignmentScoreY256_16.cpp -o libmaus2/lcs/simd_align_256_la-SimdX86BandedGlobalAlignmentScoreY256_16.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/lcs/simd_align_256_la-SimdX86GlobalAlignmentY256_8.lo `test -f 'libmaus2/lcs/SimdX86GlobalAlignmentY256_8.cpp' || echo './'`libmaus2/lcs/SimdX86GlobalAlignmentY256_8.cpp libtool: compile: mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/lcs/SimdX86GlobalAlignmentY256_8.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/simd_align_256_la-SimdX86GlobalAlignmentY256_8.o libtool: compile: mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/lcs/SimdX86GlobalAlignmentY256_8.cpp -o libmaus2/lcs/simd_align_256_la-SimdX86GlobalAlignmentY256_8.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/lcs/simd_align_256_la-SimdX86GlobalAlignmentY256_16.lo `test -f 'libmaus2/lcs/SimdX86GlobalAlignmentY256_16.cpp' || echo './'`libmaus2/lcs/SimdX86GlobalAlignmentY256_16.cpp libtool: compile: mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/lcs/SimdX86GlobalAlignmentY256_16.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/simd_align_256_la-SimdX86GlobalAlignmentY256_16.o libtool: compile: mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/lcs/SimdX86GlobalAlignmentY256_16.cpp -o libmaus2/lcs/simd_align_256_la-SimdX86GlobalAlignmentY256_16.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/lcs/simd_align_256_la-AlignmentOneAgainstManyAVX2.lo `test -f 'libmaus2/lcs/AlignmentOneAgainstManyAVX2.cpp' || echo './'`libmaus2/lcs/AlignmentOneAgainstManyAVX2.cpp libtool: compile: mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/lcs/AlignmentOneAgainstManyAVX2.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/simd_align_256_la-AlignmentOneAgainstManyAVX2.o libmaus2/lcs/AlignmentOneAgainstManyAVX2.cpp: In member function ‘virtual void libmaus2::lcs::AlignmentOneAgainstManyAVX2::process(const uint8_t*, const uint8_t*, const std::pair*, uint64_t, libmaus2::autoarray::AutoArray&)’: libmaus2/lcs/AlignmentOneAgainstManyAVX2.cpp:344:18: warning: unused parameter ‘qa’ [-Wunused-parameter] uint8_t const * qa, ~~~~~~~~~~~~~~~~^~ libmaus2/lcs/AlignmentOneAgainstManyAVX2.cpp:345:18: warning: unused parameter ‘qe’ [-Wunused-parameter] uint8_t const * qe, ~~~~~~~~~~~~~~~~^~ libmaus2/lcs/AlignmentOneAgainstManyAVX2.cpp:346:46: warning: unused parameter ‘MA’ [-Wunused-parameter] std::pair const * MA, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from ./libmaus2/lcs/AlignmentOneAgainstManyAVX2.hpp:24, from libmaus2/lcs/AlignmentOneAgainstManyAVX2.cpp:19: ./libmaus2/lcs/NP.hpp: In instantiation of ‘int64_t libmaus2::lcs::NP::npTemplate(iter_a, iter_a, iter_b, iter_b) [with iter_a = const unsigned char*; iter_b = const unsigned char*; bool self_check = true; int64_t = long long int]’: ./libmaus2/lcs/NP.hpp:116:53: required from ‘int64_t libmaus2::lcs::NP::np(iter_a, iter_a, iter_b, iter_b, bool) [with iter_a = const unsigned char*; iter_b = const unsigned char*; int64_t = long long int]’ ./libmaus2/lcs/NP.hpp:104:23: required from here ./libmaus2/lcs/NP.hpp:908:46: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘long long int’ [-Wsign-compare] if ( AlignmentTraceContainer::capacity() <= std::min(an,bn)+ed ) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ ./libmaus2/lcs/NP.hpp: In instantiation of ‘int64_t libmaus2::lcs::NP::npTemplate(iter_a, iter_a, iter_b, iter_b) [with iter_a = const unsigned char*; iter_b = const unsigned char*; bool self_check = false; int64_t = long long int]’: ./libmaus2/lcs/NP.hpp:118:54: required from ‘int64_t libmaus2::lcs::NP::np(iter_a, iter_a, iter_b, iter_b, bool) [with iter_a = const unsigned char*; iter_b = const unsigned char*; int64_t = long long int]’ ./libmaus2/lcs/NP.hpp:104:23: required from here ./libmaus2/lcs/NP.hpp:908:46: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘long long int’ [-Wsign-compare] libtool: compile: mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/lcs/AlignmentOneAgainstManyAVX2.cpp -o libmaus2/lcs/simd_align_256_la-AlignmentOneAgainstManyAVX2.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=link mipsel-linux-gnu-g++ -std=gnu++0x -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -version-info 2:611:0 -Wl,-z,relro -o libmaus2_simd_align_256.la -rpath /usr/lib/mipsel-linux-gnu libmaus2/lcs/simd_align_256_la-SimdX86GlobalAlignmentConstants256.lo libmaus2/lcs/simd_align_256_la-SimdX86BandedGlobalAlignmentY256_8.lo libmaus2/lcs/simd_align_256_la-SimdX86BandedGlobalAlignmentY256_16.lo libmaus2/lcs/simd_align_256_la-SimdX86BandedGlobalAlignmentScoreY256_16.lo libmaus2/lcs/simd_align_256_la-SimdX86GlobalAlignmentY256_8.lo 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libmaus2/lcs/simd_align_256_la-SimdX86GlobalAlignmentConstants256.o libmaus2/lcs/simd_align_256_la-SimdX86BandedGlobalAlignmentY256_8.o libmaus2/lcs/simd_align_256_la-SimdX86BandedGlobalAlignmentY256_16.o libmaus2/lcs/simd_align_256_la-SimdX86BandedGlobalAlignmentScoreY256_16.o libmaus2/lcs/simd_align_256_la-SimdX86GlobalAlignmentY256_8.o libmaus2/lcs/simd_align_256_la-SimdX86GlobalAlignmentY256_16.o libmaus2/lcs/simd_align_256_la-AlignmentOneAgainstManyAVX2.o mipsel-linux-gnu-ar: `u' modifier ignored since `D' is the default (see `U') libtool: link: mipsel-linux-gnu-ranlib .libs/libmaus2_simd_align_256.a libtool: link: ( cd ".libs" && rm -f "libmaus2_simd_align_256.la" && ln -s "../libmaus2_simd_align_256.la" "libmaus2_simd_align_256.la" ) /bin/bash ../libtool --tag=CXX --mode=link mipsel-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testAIO test/testAIO-testAIO.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/mipsel-linux-gnu -lz libtool: link: mipsel-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testAIO test/testAIO-testAIO.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/mipsel-linux-gnu -lz -fopenmp -pthread mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testbitbtree-testbitbtree.o `test -f 'test/testbitbtree.cpp' || echo './'`test/testbitbtree.cpp /bin/bash ../libtool --tag=CXX --mode=link mipsel-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 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`test -f 'test/testBitIO.cpp' || echo './'`test/testBitIO.cpp /bin/bash ../libtool --tag=CXX --mode=link mipsel-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testBitIO test/testBitIO-testBitIO.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/mipsel-linux-gnu -lz libtool: link: mipsel-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testBitIO test/testBitIO-testBitIO.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/mipsel-linux-gnu -lz -fopenmp -pthread mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 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test/testBWTDyn-testBWTDyn.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/mipsel-linux-gnu -lz -fopenmp -pthread mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testBWTHufDyn-testBWTHufDyn.o `test -f 'test/testBWTHufDyn.cpp' || echo './'`test/testBWTHufDyn.cpp /bin/bash ../libtool --tag=CXX --mode=link mipsel-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testBWTHufDyn test/testBWTHufDyn-testBWTHufDyn.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/mipsel-linux-gnu -lz libtool: link: mipsel-linux-gnu-g++ -W -Wall 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testDivSufSort test/testDivSufSort-testDivSufSort.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/mipsel-linux-gnu -lz libtool: link: mipsel-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testDivSufSort test/testDivSufSort-testDivSufSort.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/mipsel-linux-gnu -lz -fopenmp -pthread mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testDNABitWords-testDNABitWords.o `test -f 'test/testDNABitWords.cpp' || echo './'`test/testDNABitWords.cpp /bin/bash ../libtool --tag=CXX 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-Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testFastRead-testFastRead.o `test -f 'test/testFastRead.cpp' || echo './'`test/testFastRead.cpp /bin/bash ../libtool --tag=CXX --mode=link mipsel-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testFastRead test/testFastRead-testFastRead.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/mipsel-linux-gnu -lz libtool: link: mipsel-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testFastRead test/testFastRead-testFastRead.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/mipsel-linux-gnu -lz -fopenmp -pthread mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testHuffman-testHuffman.o `test -f 'test/testHuffman.cpp' || echo './'`test/testHuffman.cpp /bin/bash ../libtool --tag=CXX --mode=link mipsel-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testHuffman test/testHuffman-testHuffman.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/mipsel-linux-gnu -lz libtool: link: mipsel-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testHuffman test/testHuffman-testHuffman.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/mipsel-linux-gnu -lz -fopenmp -pthread mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testIsa-testIsa.o `test -f 'test/testIsa.cpp' || echo './'`test/testIsa.cpp /bin/bash ../libtool --tag=CXX --mode=link mipsel-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testIsa test/testIsa-testIsa.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/mipsel-linux-gnu -lz libtool: link: mipsel-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testIsa test/testIsa-testIsa.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/mipsel-linux-gnu -lz -fopenmp -pthread mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testkmp-testkmp.o `test -f 'test/testkmp.cpp' || echo './'`test/testkmp.cpp /bin/bash ../libtool --tag=CXX --mode=link mipsel-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testkmp test/testkmp-testkmp.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/mipsel-linux-gnu -lz libtool: link: mipsel-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testkmp test/testkmp-testkmp.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/mipsel-linux-gnu -lz -fopenmp -pthread mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testlz-testlz.o `test -f 'test/testlz.cpp' || echo './'`test/testlz.cpp /bin/bash ../libtool --tag=CXX --mode=link mipsel-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testlz test/testlz-testlz.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/mipsel-linux-gnu -lz libtool: link: mipsel-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testlz test/testlz-testlz.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/mipsel-linux-gnu -lz -fopenmp -pthread mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testOS-testOS.o `test -f 'test/testOS.cpp' || echo './'`test/testOS.cpp /bin/bash ../libtool --tag=CXX --mode=link mipsel-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testOS test/testOS-testOS.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/mipsel-linux-gnu -lz libtool: link: mipsel-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testOS test/testOS-testOS.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/mipsel-linux-gnu -lz -fopenmp -pthread mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testRank-testRank.o `test -f 'test/testRank.cpp' || echo './'`test/testRank.cpp /bin/bash ../libtool --tag=CXX --mode=link mipsel-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testRank test/testRank-testRank.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/mipsel-linux-gnu -lz libtool: link: mipsel-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testRank test/testRank-testRank.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/mipsel-linux-gnu -lz -fopenmp -pthread mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testToWaveletTreeBits-testToWaveletTreeBits.o `test -f 'test/testToWaveletTreeBits.cpp' || echo './'`test/testToWaveletTreeBits.cpp /bin/bash ../libtool --tag=CXX --mode=link mipsel-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testToWaveletTreeBits test/testToWaveletTreeBits-testToWaveletTreeBits.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/mipsel-linux-gnu -lz libtool: link: mipsel-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testToWaveletTreeBits test/testToWaveletTreeBits-testToWaveletTreeBits.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/mipsel-linux-gnu -lz -fopenmp -pthread mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testWaveletExternal-testWaveletExternal.o `test -f 'test/testWaveletExternal.cpp' || echo './'`test/testWaveletExternal.cpp /bin/bash ../libtool --tag=CXX --mode=link mipsel-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testWaveletExternal test/testWaveletExternal-testWaveletExternal.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/mipsel-linux-gnu -lz libtool: link: mipsel-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testWaveletExternal test/testWaveletExternal-testWaveletExternal.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/mipsel-linux-gnu -lz -fopenmp -pthread mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testTrie-testTrie.o `test -f 'test/testTrie.cpp' || echo './'`test/testTrie.cpp /bin/bash ../libtool --tag=CXX --mode=link mipsel-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testTrie test/testTrie-testTrie.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/mipsel-linux-gnu -lz libtool: link: mipsel-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testTrie test/testTrie-testTrie.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/mipsel-linux-gnu -lz -fopenmp -pthread mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testbandedlcs-testbandedlcs.o `test -f 'test/testbandedlcs.cpp' || echo './'`test/testbandedlcs.cpp /bin/bash ../libtool --tag=CXX --mode=link mipsel-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testbandedlcs test/testbandedlcs-testbandedlcs.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/mipsel-linux-gnu -lz libtool: link: mipsel-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testbandedlcs test/testbandedlcs-testbandedlcs.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/mipsel-linux-gnu -lz -fopenmp -pthread mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testbamwriter-testbamwriter.o `test -f 'test/testbamwriter.cpp' || echo './'`test/testbamwriter.cpp In file included from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from ./libmaus2/bambam/BamWriter.hpp:22, from test/testbamwriter.cpp:19: ./libmaus2/autoarray/AutoArray.hpp: In constructor ‘libmaus2::autoarray::AutoArray::AutoArray(uint64_t, bool) [with N = libmaus2::bambam::BamIndexBinChunk; libmaus2::autoarray::alloc_type atype = (libmaus2::autoarray::alloc_type)0; erase_type = libmaus2::autoarray::ArrayErase]’: ./libmaus2/autoarray/AutoArray.hpp:1801:5: warning: ‘’ may be used uninitialized in this function [-Wmaybe-uninitialized] array[i] = N(); ^~~~~ /bin/bash ../libtool --tag=CXX --mode=link mipsel-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testbamwriter test/testbamwriter-testbamwriter.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/mipsel-linux-gnu -lz libtool: link: mipsel-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testbamwriter test/testbamwriter-testbamwriter.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/mipsel-linux-gnu -lz -fopenmp -pthread mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testhashlcs-testhashlcs.o `test -f 'test/testhashlcs.cpp' || echo './'`test/testhashlcs.cpp In file included from test/testhashlcs.cpp:27: ./libmaus2/lcs/NP.hpp: In instantiation of ‘int64_t libmaus2::lcs::NP::npTemplate(iter_a, iter_a, iter_b, iter_b) [with iter_a = const unsigned char*; iter_b = const unsigned char*; bool self_check = true; int64_t = long long int]’: ./libmaus2/lcs/NP.hpp:116:53: required from ‘int64_t libmaus2::lcs::NP::np(iter_a, iter_a, iter_b, iter_b, bool) [with iter_a = const unsigned char*; iter_b = const unsigned char*; int64_t = long long int]’ ./libmaus2/lcs/NP.hpp:104:23: required from here ./libmaus2/lcs/NP.hpp:908:46: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘long long int’ [-Wsign-compare] if ( AlignmentTraceContainer::capacity() <= std::min(an,bn)+ed ) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ ./libmaus2/lcs/NP.hpp: In instantiation of ‘int64_t libmaus2::lcs::NP::npTemplate(iter_a, iter_a, iter_b, iter_b) [with iter_a = const unsigned char*; iter_b = const unsigned char*; bool self_check = false; int64_t = long long int]’: ./libmaus2/lcs/NP.hpp:118:54: required from ‘int64_t libmaus2::lcs::NP::np(iter_a, iter_a, iter_b, iter_b, bool) [with iter_a = const unsigned char*; iter_b = const unsigned char*; int64_t = long long int]’ ./libmaus2/lcs/NP.hpp:104:23: required from here ./libmaus2/lcs/NP.hpp:908:46: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘long long int’ [-Wsign-compare] ./libmaus2/lcs/NP.hpp: In instantiation of ‘int64_t libmaus2::lcs::NP::npTemplate(iter_a, iter_a, iter_b, iter_b) [with iter_a = __gnu_cxx::__normal_iterator >; iter_b = __gnu_cxx::__normal_iterator >; bool self_check = true; int64_t = long long int]’: ./libmaus2/lcs/NP.hpp:116:53: required from ‘int64_t libmaus2::lcs::NP::np(iter_a, iter_a, iter_b, iter_b, bool) [with iter_a = __gnu_cxx::__normal_iterator >; iter_b = __gnu_cxx::__normal_iterator >; int64_t = long long int]’ test/testhashlcs.cpp:159:44: required from here ./libmaus2/lcs/NP.hpp:908:46: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘long long int’ [-Wsign-compare] ./libmaus2/lcs/NP.hpp: In instantiation of ‘int64_t libmaus2::lcs::NP::npTemplate(iter_a, iter_a, iter_b, iter_b) [with iter_a = __gnu_cxx::__normal_iterator >; iter_b = __gnu_cxx::__normal_iterator >; bool self_check = false; int64_t = long long int]’: ./libmaus2/lcs/NP.hpp:118:54: required from ‘int64_t libmaus2::lcs::NP::np(iter_a, iter_a, iter_b, iter_b, bool) [with iter_a = __gnu_cxx::__normal_iterator >; iter_b = __gnu_cxx::__normal_iterator >; int64_t = long long int]’ test/testhashlcs.cpp:159:44: required from here ./libmaus2/lcs/NP.hpp:908:46: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘long long int’ [-Wsign-compare] ./libmaus2/lcs/NP.hpp: In instantiation of ‘int64_t libmaus2::lcs::NP::npTemplate(iter_a, iter_a, iter_b, iter_b) [with iter_a = __gnu_cxx::__normal_iterator >; iter_b = __gnu_cxx::__normal_iterator >; bool self_check = true; int64_t = long long int]’: ./libmaus2/lcs/NP.hpp:116:53: required from ‘int64_t libmaus2::lcs::NP::np(iter_a, iter_a, iter_b, iter_b, bool) [with iter_a = __gnu_cxx::__normal_iterator >; iter_b = __gnu_cxx::__normal_iterator >; int64_t = long long int]’ test/testhashlcs.cpp:182:57: required from here ./libmaus2/lcs/NP.hpp:908:46: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘long long int’ [-Wsign-compare] ./libmaus2/lcs/NP.hpp: In instantiation of ‘int64_t libmaus2::lcs::NP::npTemplate(iter_a, iter_a, iter_b, iter_b) [with iter_a = __gnu_cxx::__normal_iterator >; iter_b = __gnu_cxx::__normal_iterator >; bool self_check = false; int64_t = long long int]’: ./libmaus2/lcs/NP.hpp:118:54: required from ‘int64_t libmaus2::lcs::NP::np(iter_a, iter_a, iter_b, iter_b, bool) [with iter_a = __gnu_cxx::__normal_iterator >; iter_b = __gnu_cxx::__normal_iterator >; int64_t = long long int]’ test/testhashlcs.cpp:182:57: required from here ./libmaus2/lcs/NP.hpp:908:46: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘long long int’ [-Wsign-compare] ./libmaus2/lcs/NP.hpp: In instantiation of ‘int64_t libmaus2::lcs::NP::npTemplate(iter_a, iter_a, iter_b, iter_b) [with iter_a = const char*; iter_b = const char*; bool self_check = true; int64_t = long long int]’: ./libmaus2/lcs/NP.hpp:116:53: required from ‘int64_t libmaus2::lcs::NP::np(iter_a, iter_a, iter_b, iter_b, bool) [with iter_a = const char*; iter_b = const char*; int64_t = long long int]’ test/testhashlcs.cpp:201:26: required from here ./libmaus2/lcs/NP.hpp:908:46: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘long long int’ [-Wsign-compare] ./libmaus2/lcs/NP.hpp: In instantiation of ‘int64_t libmaus2::lcs::NP::npTemplate(iter_a, iter_a, iter_b, iter_b) [with iter_a = const char*; iter_b = const char*; bool self_check = false; int64_t = long long int]’: ./libmaus2/lcs/NP.hpp:118:54: required from ‘int64_t libmaus2::lcs::NP::np(iter_a, iter_a, iter_b, iter_b, bool) [with iter_a = const char*; iter_b = const char*; int64_t = long long int]’ test/testhashlcs.cpp:201:26: required from here ./libmaus2/lcs/NP.hpp:908:46: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘long long int’ [-Wsign-compare] /bin/bash ../libtool --tag=CXX --mode=link mipsel-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testhashlcs test/testhashlcs-testhashlcs.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/mipsel-linux-gnu -lz libtool: link: mipsel-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testhashlcs test/testhashlcs-testhashlcs.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/mipsel-linux-gnu -lz -fopenmp -pthread mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testarraydecode-testarraydecode.o `test -f 'test/testarraydecode.cpp' || echo './'`test/testarraydecode.cpp /bin/bash ../libtool --tag=CXX --mode=link mipsel-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testarraydecode test/testarraydecode-testarraydecode.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/mipsel-linux-gnu -lz libtool: link: mipsel-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testarraydecode test/testarraydecode-testarraydecode.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/mipsel-linux-gnu -lz -fopenmp -pthread mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testsnappy-testsnappy.o `test -f 'test/testsnappy.cpp' || echo './'`test/testsnappy.cpp /bin/bash ../libtool --tag=CXX --mode=link mipsel-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testsnappy test/testsnappy-testsnappy.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/mipsel-linux-gnu -lz libtool: link: mipsel-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testsnappy test/testsnappy-testsnappy.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/mipsel-linux-gnu -lz -fopenmp -pthread mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testsnappyconcat-testsnappyconcat.o `test -f 'test/testsnappyconcat.cpp' || echo './'`test/testsnappyconcat.cpp /bin/bash ../libtool --tag=CXX --mode=link mipsel-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testsnappyconcat test/testsnappyconcat-testsnappyconcat.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/mipsel-linux-gnu -lz libtool: link: mipsel-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testsnappyconcat test/testsnappyconcat-testsnappyconcat.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/mipsel-linux-gnu -lz -fopenmp -pthread mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testgunzip-testgunzip.o `test -f 'test/testgunzip.cpp' || echo './'`test/testgunzip.cpp /bin/bash ../libtool --tag=CXX --mode=link mipsel-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testgunzip test/testgunzip-testgunzip.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/mipsel-linux-gnu -lz libtool: link: mipsel-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testgunzip test/testgunzip-testgunzip.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/mipsel-linux-gnu -lz -fopenmp -pthread mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testregex-testregex.o `test -f 'test/testregex.cpp' || echo './'`test/testregex.cpp /bin/bash ../libtool --tag=CXX --mode=link mipsel-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testregex test/testregex-testregex.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/mipsel-linux-gnu -lz libtool: link: mipsel-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testregex test/testregex-testregex.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/mipsel-linux-gnu -lz -fopenmp -pthread mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testhashcollisions-testhashcollisions.o `test -f 'test/testhashcollisions.cpp' || echo './'`test/testhashcollisions.cpp /bin/bash ../libtool --tag=CXX --mode=link mipsel-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testhashcollisions test/testhashcollisions-testhashcollisions.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/mipsel-linux-gnu -lz libtool: link: mipsel-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testhashcollisions test/testhashcollisions-testhashcollisions.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/mipsel-linux-gnu -lz -fopenmp -pthread mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testsimplebloomcollisions-testsimplebloomcollisions.o `test -f 'test/testsimplebloomcollisions.cpp' || echo './'`test/testsimplebloomcollisions.cpp In file included from ./libmaus2/util/SimpleBloomFilter.hpp:25, from test/testsimplebloomcollisions.cpp:20: ./libmaus2/bitio/BitVector.hpp: In instantiation of ‘bool libmaus2::bitio::BitVectorTemplate<_data_type>::setSync(uint64_t) [with _data_type = long long unsigned int; uint64_t = long long unsigned int]’: ./libmaus2/util/SimpleBloomFilter.hpp:180:56: required from here ./libmaus2/bitio/BitVector.hpp:143:32: warning: unused parameter ‘i’ [-Wunused-parameter] bool setSync(uint64_t const i) ~~~~~~~~~~~~~~~^ In file included from test/testsimplebloomcollisions.cpp:20: ./libmaus2/util/SimpleBloomFilter.hpp: In instantiation of ‘void libmaus2::util::SimpleBloomFilterLockBase<_lockblocksize>::lockBlock(uint64_t) [with long long unsigned int _lockblocksize = 64; uint64_t = long long unsigned int]’: ./libmaus2/util/SimpleBloomFilter.hpp:90:5: required from ‘void libmaus2::util::SimpleBloomFilterLockBase<_lockblocksize>::lockForIndex(uint64_t) [with long long unsigned int _lockblocksize = 64; uint64_t = long long unsigned int]’ ./libmaus2/util/SimpleBloomFilter.hpp:189:29: required from here ./libmaus2/util/SimpleBloomFilter.hpp:47:34: warning: unused parameter ‘i’ [-Wunused-parameter] void lockBlock(uint64_t const i) ~~~~~~~~~~~~~~~^ In file included from test/testsimplebloomcollisions.cpp:20: ./libmaus2/util/SimpleBloomFilter.hpp: In instantiation of ‘void libmaus2::util::SimpleBloomFilterLockBase<_lockblocksize>::unlockBlock(uint64_t) [with long long unsigned int _lockblocksize = 64; uint64_t = long long unsigned int]’: ./libmaus2/util/SimpleBloomFilter.hpp:94:5: required from ‘void libmaus2::util::SimpleBloomFilterLockBase<_lockblocksize>::unlockForIndex(uint64_t) [with long long unsigned int _lockblocksize = 64; uint64_t = long long unsigned int]’ ./libmaus2/util/SimpleBloomFilter.hpp:197:31: required from here ./libmaus2/util/SimpleBloomFilter.hpp:71:36: warning: unused parameter ‘i’ [-Wunused-parameter] void unlockBlock(uint64_t const i) ~~~~~~~~~~~~~~~^ /bin/bash ../libtool --tag=CXX --mode=link mipsel-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testsimplebloomcollisions test/testsimplebloomcollisions-testsimplebloomcollisions.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/mipsel-linux-gnu -lz libtool: link: mipsel-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testsimplebloomcollisions test/testsimplebloomcollisions-testsimplebloomcollisions.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/mipsel-linux-gnu -lz -fopenmp -pthread mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testsimplehash-testsimplehash.o `test -f 'test/testsimplehash.cpp' || echo './'`test/testsimplehash.cpp /bin/bash ../libtool --tag=CXX --mode=link mipsel-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testsimplehash test/testsimplehash-testsimplehash.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/mipsel-linux-gnu -lz libtool: link: mipsel-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testsimplehash test/testsimplehash-testsimplehash.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/mipsel-linux-gnu -lz -fopenmp -pthread mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testsimplecountinghash-testsimplecountinghash.o `test -f 'test/testsimplecountinghash.cpp' || echo './'`test/testsimplecountinghash.cpp /bin/bash ../libtool --tag=CXX --mode=link mipsel-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testsimplecountinghash test/testsimplecountinghash-testsimplecountinghash.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/mipsel-linux-gnu -lz libtool: link: mipsel-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testsimplecountinghash test/testsimplecountinghash-testsimplecountinghash.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/mipsel-linux-gnu -lz -fopenmp -pthread mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testsyncreorderset-testsyncreorderset.o `test -f 'test/testsyncreorderset.cpp' || echo './'`test/testsyncreorderset.cpp /bin/bash ../libtool --tag=CXX --mode=link mipsel-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testsyncreorderset test/testsyncreorderset-testsyncreorderset.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/mipsel-linux-gnu -lz libtool: link: mipsel-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testsyncreorderset test/testsyncreorderset-testsyncreorderset.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/mipsel-linux-gnu -lz -fopenmp -pthread mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testcachealignedalloc-testcachealignedalloc.o `test -f 'test/testcachealignedalloc.cpp' || echo './'`test/testcachealignedalloc.cpp /bin/bash ../libtool --tag=CXX --mode=link mipsel-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testcachealignedalloc test/testcachealignedalloc-testcachealignedalloc.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/mipsel-linux-gnu -lz libtool: link: mipsel-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testcachealignedalloc test/testcachealignedalloc-testcachealignedalloc.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/mipsel-linux-gnu -lz -fopenmp -pthread mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testblocksynchronous-testblocksynchronous.o `test -f 'test/testblocksynchronous.cpp' || echo './'`test/testblocksynchronous.cpp /bin/bash ../libtool --tag=CXX --mode=link mipsel-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testblocksynchronous test/testblocksynchronous-testblocksynchronous.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/mipsel-linux-gnu -lz libtool: link: mipsel-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testblocksynchronous test/testblocksynchronous-testblocksynchronous.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/mipsel-linux-gnu -lz -fopenmp -pthread mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testsyncfastreaderbase-testsyncfastreaderbase.o `test -f 'test/testsyncfastreaderbase.cpp' || echo './'`test/testsyncfastreaderbase.cpp /bin/bash ../libtool --tag=CXX --mode=link mipsel-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testsyncfastreaderbase test/testsyncfastreaderbase-testsyncfastreaderbase.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/mipsel-linux-gnu -lz libtool: link: mipsel-linux-gnu-g++ -W 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testcollatespeed test/testcollatespeed-testcollatespeed.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -ldl -lrt -L/usr/lib/mipsel-linux-gnu -lz libtool: link: mipsel-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testcollatespeed test/testcollatespeed-testcollatespeed.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -ldl -lrt -L/usr/lib/mipsel-linux-gnu -lz -fopenmp -pthread mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testbamheaderparser-testbamheaderparser.o `test -f 'test/testbamheaderparser.cpp' || echo './'`test/testbamheaderparser.cpp 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test/testbamcat-testbamcat.o `test -f 'test/testbamcat.cpp' || echo './'`test/testbamcat.cpp /bin/bash ../libtool --tag=CXX --mode=link mipsel-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testbamcat test/testbamcat-testbamcat.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -ldl -lrt -L/usr/lib/mipsel-linux-gnu -lz libtool: link: mipsel-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testbamcat test/testbamcat-testbamcat.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -ldl -lrt -L/usr/lib/mipsel-linux-gnu -lz -fopenmp -pthread mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 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./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/mipsel-linux-gnu -lz -fopenmp -pthread mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testhist-testhist.o `test -f 'test/testhist.cpp' || echo './'`test/testhist.cpp /bin/bash ../libtool --tag=CXX --mode=link mipsel-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testhist test/testhist-testhist.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/mipsel-linux-gnu -lz libtool: link: mipsel-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat 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libmaus2_simd_align_256.la -lrt -L/usr/lib/mipsel-linux-gnu -lz libtool: link: mipsel-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testfastaparse test/testfastaparse-testfastaparse.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/mipsel-linux-gnu -lz -fopenmp -pthread mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testvalidatebamindex-testvalidatebamindex.o `test -f 'test/testvalidatebamindex.cpp' || echo './'`test/testvalidatebamindex.cpp /bin/bash ../libtool --tag=CXX --mode=link mipsel-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 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-I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testthreadpool-testthreadpool.o `test -f 'test/testthreadpool.cpp' || echo './'`test/testthreadpool.cpp /bin/bash ../libtool --tag=CXX --mode=link mipsel-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testthreadpool test/testthreadpool-testthreadpool.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/mipsel-linux-gnu -lz libtool: link: mipsel-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testthreadpool test/testthreadpool-testthreadpool.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/mipsel-linux-gnu -lz -fopenmp -pthread mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testsimplethreadpool-testsimplethreadpool.o `test -f 'test/testsimplethreadpool.cpp' || echo './'`test/testsimplethreadpool.cpp /bin/bash ../libtool --tag=CXX --mode=link mipsel-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testsimplethreadpool test/testsimplethreadpool-testsimplethreadpool.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/mipsel-linux-gnu -lz libtool: link: mipsel-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testsimplethreadpool test/testsimplethreadpool-testsimplethreadpool.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/mipsel-linux-gnu -lz -fopenmp -pthread mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testthreadpoolbamdecode-testthreadpoolbamdecode.o `test -f 'test/testthreadpoolbamdecode.cpp' || echo './'`test/testthreadpoolbamdecode.cpp test/testthreadpoolbamdecode.cpp: In member function ‘virtual void BamThreadPoolDecodeBamParsePackageDispatcher::dispatch(libmaus2::parallel::ThreadWorkPackage*, libmaus2::parallel::ThreadPoolInterfaceEnqueTermInterface&)’: test/testthreadpoolbamdecode.cpp:694:40: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] while ( (pc-pa >= 4) && ((pc-pa) >= (4+(lblocksize=decodeLittleEndianInteger<4>(pa)) )) ) ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link mipsel-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testthreadpoolbamdecode test/testthreadpoolbamdecode-testthreadpoolbamdecode.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/mipsel-linux-gnu -lz libtool: link: mipsel-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testthreadpoolbamdecode test/testthreadpoolbamdecode-testthreadpoolbamdecode.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/mipsel-linux-gnu -lz -fopenmp -pthread mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testsimplethreadpoolbamdecode-testsimplethreadpoolbamdecode.o `test -f 'test/testsimplethreadpoolbamdecode.cpp' || echo './'`test/testsimplethreadpoolbamdecode.cpp test/testsimplethreadpoolbamdecode.cpp: In instantiation of ‘void BamThreadPoolDecodeBamParsePackageDispatcher<_order_type>::dispatch(libmaus2::parallel::SimpleThreadWorkPackage*, libmaus2::parallel::SimpleThreadPoolInterfaceEnqueTermInterface&) [with _order_type = libmaus2::bambam::BamAlignmentNameComparator]’: test/testsimplethreadpoolbamdecode.cpp:921:15: required from here test/testsimplethreadpoolbamdecode.cpp:979:40: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] while ( (pc-pa >= 4) && ((pc-pa) >= (4+(lblocksize=decodeLittleEndianInteger<4>(pa)) )) ) ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ test/testsimplethreadpoolbamdecode.cpp: In instantiation of ‘void BamThreadPoolDecodeBamParsePackageDispatcher<_order_type>::dispatch(libmaus2::parallel::SimpleThreadWorkPackage*, libmaus2::parallel::SimpleThreadPoolInterfaceEnqueTermInterface&) [with _order_type = libmaus2::bambam::BamAlignmentPosComparator]’: test/testsimplethreadpoolbamdecode.cpp:921:15: required from here test/testsimplethreadpoolbamdecode.cpp:979:40: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] test/testsimplethreadpoolbamdecode.cpp: In instantiation of ‘void BamThreadPoolMergeProcessPackageDispatcher<_order_type>::dispatch(libmaus2::parallel::SimpleThreadWorkPackage*, libmaus2::parallel::SimpleThreadPoolInterfaceEnqueTermInterface&) [with _order_type = libmaus2::bambam::BamAlignmentNameComparator]’: test/testsimplethreadpoolbamdecode.cpp:2712:15: required from here test/testsimplethreadpoolbamdecode.cpp:2771:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] (pe-pc) >= (4+(parserState.blocklen=decodeLEInteger4(pc))) ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ test/testsimplethreadpoolbamdecode.cpp:2779:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] (pe-pc) >= (4+(parserState.blocklen=decodeLEInteger4(pc))) ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ test/testsimplethreadpoolbamdecode.cpp: In instantiation of ‘void BamThreadPoolMergeProcessPackageDispatcher<_order_type>::dispatch(libmaus2::parallel::SimpleThreadWorkPackage*, libmaus2::parallel::SimpleThreadPoolInterfaceEnqueTermInterface&) [with _order_type = libmaus2::bambam::BamAlignmentPosComparator]’: test/testsimplethreadpoolbamdecode.cpp:2712:15: required from here test/testsimplethreadpoolbamdecode.cpp:2771:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] (pe-pc) >= (4+(parserState.blocklen=decodeLEInteger4(pc))) ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ test/testsimplethreadpoolbamdecode.cpp:2779:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] (pe-pc) >= (4+(parserState.blocklen=decodeLEInteger4(pc))) ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ./libmaus2/bambam/BamAuxFilterVector.hpp:22, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:27, from ./libmaus2/bambam/BamAlignment.hpp:24, from test/testsimplethreadpoolbamdecode.cpp:19: ./libmaus2/bitio/BitVector.hpp: In instantiation of ‘void libmaus2::bitio::BitVectorTemplate<_data_type>::setSync(uint64_t, bool) [with _data_type = long long unsigned int; uint64_t = long long unsigned int]’: test/testsimplethreadpoolbamdecode.cpp:2613:6: required from ‘void BamThreadPoolMergeReadPackageDispatcher<_order_type>::dispatch(libmaus2::parallel::SimpleThreadWorkPackage*, libmaus2::parallel::SimpleThreadPoolInterfaceEnqueTermInterface&) [with _order_type = libmaus2::bambam::BamAlignmentNameComparator]’ test/testsimplethreadpoolbamdecode.cpp:2570:15: required from here ./libmaus2/bitio/BitVector.hpp:132:32: warning: unused parameter ‘i’ [-Wunused-parameter] void setSync(uint64_t const i, bool b) ~~~~~~~~~~~~~~~^ ./libmaus2/bitio/BitVector.hpp:132:40: warning: unused parameter ‘b’ [-Wunused-parameter] void setSync(uint64_t const i, bool b) ~~~~~^ /bin/bash ../libtool --tag=CXX --mode=link mipsel-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testsimplethreadpoolbamdecode test/testsimplethreadpoolbamdecode-testsimplethreadpoolbamdecode.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/mipsel-linux-gnu -lz libtool: link: mipsel-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testsimplethreadpoolbamdecode test/testsimplethreadpoolbamdecode-testsimplethreadpoolbamdecode.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/mipsel-linux-gnu -lz -fopenmp -pthread mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testgaparraybyte-testgaparraybyte.o `test -f 'test/testgaparraybyte.cpp' || echo './'`test/testgaparraybyte.cpp /bin/bash ../libtool --tag=CXX --mode=link mipsel-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testgaparraybyte test/testgaparraybyte-testgaparraybyte.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/mipsel-linux-gnu -lz libtool: link: mipsel-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testgaparraybyte test/testgaparraybyte-testgaparraybyte.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/mipsel-linux-gnu -lz -fopenmp -pthread mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testzlibconcat-testzlibconcat.o `test -f 'test/testzlibconcat.cpp' || echo './'`test/testzlibconcat.cpp /bin/bash ../libtool --tag=CXX --mode=link mipsel-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testzlibconcat test/testzlibconcat-testzlibconcat.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/mipsel-linux-gnu -lz libtool: link: mipsel-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testzlibconcat test/testzlibconcat-testzlibconcat.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/mipsel-linux-gnu -lz -fopenmp -pthread mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testsimplecompressblock-testsimplecompressblock.o `test -f 'test/testsimplecompressblock.cpp' || echo './'`test/testsimplecompressblock.cpp /bin/bash ../libtool --tag=CXX --mode=link mipsel-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testsimplecompressblock test/testsimplecompressblock-testsimplecompressblock.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -ldl -lrt -L/usr/lib/mipsel-linux-gnu -lz libtool: link: mipsel-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testsimplecompressblock test/testsimplecompressblock-testsimplecompressblock.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -ldl -lrt -L/usr/lib/mipsel-linux-gnu -lz -fopenmp -pthread mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testrazdec-testrazdec.o `test -f 'test/testrazdec.cpp' || echo './'`test/testrazdec.cpp /bin/bash ../libtool --tag=CXX --mode=link mipsel-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testrazdec test/testrazdec-testrazdec.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/mipsel-linux-gnu -lz libtool: link: mipsel-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testrazdec test/testrazdec-testrazdec.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/mipsel-linux-gnu -lz -fopenmp -pthread mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testfaindex-testfaindex.o `test -f 'test/testfaindex.cpp' || echo './'`test/testfaindex.cpp /bin/bash ../libtool --tag=CXX --mode=link mipsel-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testfaindex test/testfaindex-testfaindex.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/mipsel-linux-gnu -lz libtool: link: mipsel-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testfaindex test/testfaindex-testfaindex.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/mipsel-linux-gnu -lz -fopenmp -pthread mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testfastablockrecode-testfastablockrecode.o `test -f 'test/testfastablockrecode.cpp' || echo './'`test/testfastablockrecode.cpp /bin/bash ../libtool --tag=CXX --mode=link mipsel-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testfastablockrecode test/testfastablockrecode-testfastablockrecode.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/mipsel-linux-gnu -lz libtool: link: mipsel-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testfastablockrecode test/testfastablockrecode-testfastablockrecode.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/mipsel-linux-gnu -lz -fopenmp -pthread mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testhttp-testhttp.o `test -f 'test/testhttp.cpp' || echo './'`test/testhttp.cpp /bin/bash ../libtool --tag=CXX --mode=link mipsel-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testhttp test/testhttp-testhttp.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/mipsel-linux-gnu -lz libtool: link: mipsel-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testhttp test/testhttp-testhttp.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/mipsel-linux-gnu -lz -fopenmp -pthread mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testftp-testftp.o `test -f 'test/testftp.cpp' || echo './'`test/testftp.cpp /bin/bash ../libtool --tag=CXX --mode=link mipsel-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 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mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testdecimalnumberparser-testdecimalnumberparser.o `test -f 'test/testdecimalnumberparser.cpp' || echo './'`test/testdecimalnumberparser.cpp /bin/bash ../libtool --tag=CXX --mode=link mipsel-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testdecimalnumberparser test/testdecimalnumberparser-testdecimalnumberparser.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/mipsel-linux-gnu -lz libtool: link: mipsel-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testdecimalnumberparser test/testdecimalnumberparser-testdecimalnumberparser.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/mipsel-linux-gnu -lz -fopenmp -pthread mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testunsignedinteger-testunsignedinteger.o `test -f 'test/testunsignedinteger.cpp' || echo './'`test/testunsignedinteger.cpp /bin/bash ../libtool --tag=CXX --mode=link mipsel-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testunsignedinteger test/testunsignedinteger-testunsignedinteger.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/mipsel-linux-gnu -lz libtool: link: mipsel-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testunsignedinteger test/testunsignedinteger-testunsignedinteger.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/mipsel-linux-gnu -lz -fopenmp -pthread mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testmd5-testmd5.o `test -f 'test/testmd5.cpp' || echo './'`test/testmd5.cpp /bin/bash ../libtool --tag=CXX --mode=link mipsel-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testmd5 test/testmd5-testmd5.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/mipsel-linux-gnu -lz libtool: link: mipsel-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testmd5 test/testmd5-testmd5.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/mipsel-linux-gnu -lz -fopenmp -pthread mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testsha-testsha.o `test -f 'test/testsha.cpp' || echo './'`test/testsha.cpp mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/digest/libmaus2digests_a-SHA2_256_sse4.o `test -f 'libmaus2/digest/SHA2_256_sse4.cpp' || echo './'`libmaus2/digest/SHA2_256_sse4.cpp mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/digest/libmaus2digests_a-SHA2_512_sse4.o `test -f 'libmaus2/digest/SHA2_512_sse4.cpp' || echo './'`libmaus2/digest/SHA2_512_sse4.cpp mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/digest/libmaus2digests_a-DigestFactory_SHA2_ASM.o `test -f 'libmaus2/digest/DigestFactory_SHA2_ASM.cpp' || echo './'`libmaus2/digest/DigestFactory_SHA2_ASM.cpp rm -f libmaus2digests.a mipsel-linux-gnu-ar cru libmaus2digests.a libmaus2/digest/libmaus2digests_a-SHA2_256_sse4.o libmaus2/digest/libmaus2digests_a-SHA2_512_sse4.o libmaus2/digest/libmaus2digests_a-DigestFactory_SHA2_ASM.o mipsel-linux-gnu-ar: `u' modifier ignored since `D' is the default (see `U') mipsel-linux-gnu-ranlib libmaus2digests.a mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/digest/libmaus2digests_sse4_a-CRC32C_sse42.o `test -f 'libmaus2/digest/CRC32C_sse42.cpp' || echo './'`libmaus2/digest/CRC32C_sse42.cpp libmaus2/digest/CRC32C_sse42.cpp: In member function ‘void libmaus2::digest::CRC32C_sse42::update(const uint8_t*, size_t)’: libmaus2/digest/CRC32C_sse42.cpp:70:61: warning: unused parameter ‘t’ [-Wunused-parameter] void libmaus2::digest::CRC32C_sse42::update(uint8_t const * t, size_t l) ~~~~~~~~~~~~~~~~^ libmaus2/digest/CRC32C_sse42.cpp:70:71: warning: unused parameter ‘l’ [-Wunused-parameter] void libmaus2::digest::CRC32C_sse42::update(uint8_t const * t, size_t l) ~~~~~~~^ mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/digest/libmaus2digests_sse4_a-DigestFactory_CRC32C_SSE42.o `test -f 'libmaus2/digest/DigestFactory_CRC32C_SSE42.cpp' || echo './'`libmaus2/digest/DigestFactory_CRC32C_SSE42.cpp rm -f libmaus2digests_sse4.a mipsel-linux-gnu-ar cru libmaus2digests_sse4.a libmaus2/digest/libmaus2digests_sse4_a-CRC32C_sse42.o libmaus2/digest/libmaus2digests_sse4_a-DigestFactory_CRC32C_SSE42.o mipsel-linux-gnu-ar: `u' modifier ignored since `D' is the default (see `U') mipsel-linux-gnu-ranlib libmaus2digests_sse4.a /bin/bash ../libtool --tag=CXX --mode=link mipsel-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testsha test/testsha-testsha.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la libmaus2digests.a libmaus2digests_sse4.a -lrt -L/usr/lib/mipsel-linux-gnu -lz libtool: link: mipsel-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testsha test/testsha-testsha.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so libmaus2digests.a libmaus2digests_sse4.a -lrt -L/usr/lib/mipsel-linux-gnu -lz -fopenmp -pthread mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testsinglefileserver-testsinglefileserver.o `test -f 'test/testsinglefileserver.cpp' || echo './'`test/testsinglefileserver.cpp /bin/bash ../libtool --tag=CXX --mode=link mipsel-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testsinglefileserver test/testsinglefileserver-testsinglefileserver.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/mipsel-linux-gnu -lz libtool: link: mipsel-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testsinglefileserver test/testsinglefileserver-testsinglefileserver.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/mipsel-linux-gnu -lz -fopenmp -pthread mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testparallelbamvalidation-testparallelbamvalidation.o `test -f 'test/testparallelbamvalidation.cpp' || echo './'`test/testparallelbamvalidation.cpp /bin/bash ../libtool --tag=CXX --mode=link mipsel-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testparallelbamvalidation test/testparallelbamvalidation-testparallelbamvalidation.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -ldl -lrt -L/usr/lib/mipsel-linux-gnu -lz libtool: link: mipsel-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testparallelbamvalidation test/testparallelbamvalidation-testparallelbamvalidation.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -ldl -lrt -L/usr/lib/mipsel-linux-gnu -lz -fopenmp -pthread mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testparallelbamrewrite-testparallelbamrewrite.o `test -f 'test/testparallelbamrewrite.cpp' || echo './'`test/testparallelbamrewrite.cpp /bin/bash ../libtool --tag=CXX --mode=link mipsel-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testparallelbamrewrite test/testparallelbamrewrite-testparallelbamrewrite.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/mipsel-linux-gnu -lz libtool: link: mipsel-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testparallelbamrewrite test/testparallelbamrewrite-testparallelbamrewrite.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/mipsel-linux-gnu -lz -fopenmp -pthread mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testbammateerase-testbammateerase.o `test -f 'test/testbammateerase.cpp' || echo './'`test/testbammateerase.cpp /bin/bash ../libtool --tag=CXX --mode=link mipsel-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testbammateerase test/testbammateerase-testbammateerase.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/mipsel-linux-gnu -lz libtool: link: mipsel-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testbammateerase test/testbammateerase-testbammateerase.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/mipsel-linux-gnu -lz -fopenmp -pthread mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testparallelbamblocksort-testparallelbamblocksort.o `test -f 'test/testparallelbamblocksort.cpp' || echo './'`test/testparallelbamblocksort.cpp In file included from test/testparallelbamblocksort.cpp:19: ./libmaus2/bambam/parallel/BlockMergeControl.hpp: In member function ‘void libmaus2::bambam::parallel::BlockMergeControl<_heap_element_type>::samCheckWritePendingQueue()’: ./libmaus2/bambam/parallel/BlockMergeControl.hpp:1122:49: warning: left shift count >= width of type [-Wshift-count-overflow] package->subid = ((block->blockid + 1) << 32) | block->subblockid; ^~ ./libmaus2/bambam/parallel/BlockMergeControl.hpp:1127:50: warning: left shift count >= width of type [-Wshift-count-overflow] cpackage->subid = ((block->blockid + 1) << 32) | block->subblockid; ^~ In file included from ./libmaus2/bambam/BamAuxFilterVector.hpp:22, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:27, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/ChecksumsInterface.hpp:22, from ./libmaus2/bambam/ChecksumsFactory.hpp:22, from ./libmaus2/bambam/ChecksumsInterfaceAllocator.hpp:22, from ./libmaus2/bambam/parallel/BlockMergeControl.hpp:27, from test/testparallelbamblocksort.cpp:19: ./libmaus2/bitio/BitVector.hpp: In instantiation of ‘void libmaus2::bitio::BitVectorTemplate<_data_type>::setSync(uint64_t, bool) [with _data_type = long long unsigned int; uint64_t = long long unsigned int]’: ./libmaus2/bambam/DupSetCallbackSharedVector.hpp:44:43: required from here ./libmaus2/bitio/BitVector.hpp:132:32: warning: unused parameter ‘i’ [-Wunused-parameter] void setSync(uint64_t const i, bool b) ~~~~~~~~~~~~~~~^ ./libmaus2/bitio/BitVector.hpp:132:40: warning: unused parameter ‘b’ [-Wunused-parameter] void setSync(uint64_t const i, bool b) ~~~~~^ In file included from test/testparallelbamblocksort.cpp:19: ./libmaus2/bambam/parallel/BlockMergeControl.hpp: In instantiation of ‘void libmaus2::bambam::parallel::BlockMergeControl<_heap_element_type>::samCheckWritePendingQueue() [with _heap_element_type = libmaus2::bambam::parallel::GenericInputControlMergeHeapEntryQueryName]’: ./libmaus2/bambam/parallel/BlockMergeControl.hpp:1193:6: required from ‘void libmaus2::bambam::parallel::BlockMergeControl<_heap_element_type>::sam_data_write_function(ssize_t, size_t, const char*, size_t, cram_data_write_block_type) [with _heap_element_type = libmaus2::bambam::parallel::GenericInputControlMergeHeapEntryQueryName; ssize_t = int; size_t = unsigned int; cram_data_write_block_type = _cram_data_write_block_type]’ ./libmaus2/bambam/parallel/BlockMergeControl.hpp:1249:6: required from ‘static void libmaus2::bambam::parallel::BlockMergeControl<_heap_element_type>::sam_data_write_function(void*, ssize_t, size_t, const char*, size_t, cram_data_write_block_type) [with _heap_element_type = libmaus2::bambam::parallel::GenericInputControlMergeHeapEntryQueryName; ssize_t = int; size_t = unsigned int; cram_data_write_block_type = _cram_data_write_block_type]’ ./libmaus2/bambam/parallel/BlockMergeControl.hpp:339:49: required from ‘void libmaus2::bambam::parallel::BlockMergeControl<_heap_element_type>::enqueHeader() [with _heap_element_type = libmaus2::bambam::parallel::GenericInputControlMergeHeapEntryQueryName]’ ./libmaus2/bambam/parallel/BlockMergeControl.hpp:556:6: required from ‘libmaus2::bambam::parallel::BlockMergeControl<_heap_element_type>::BlockMergeControl(libmaus2::parallel::SimpleThreadPool&, std::ostream&, libmaus2::autoarray::AutoArray&, const std::vector&, libmaus2::bitio::BitVector*, int, uint64_t, uint64_t, uint64_t, uint64_t, uint64_t, const string&, const string&, libmaus2::digest::DigestInterface*, libmaus2::bambam::parallel::BlockMergeControlTypeBase::block_merge_output_format_t, bool, bool) [with _heap_element_type = libmaus2::bambam::parallel::GenericInputControlMergeHeapEntryQueryName; std::ostream = std::basic_ostream; libmaus2::bitio::BitVector = libmaus2::bitio::BitVectorTemplate; uint64_t = long long unsigned int; std::__cxx11::string = std::__cxx11::basic_string]’ test/testparallelbamblocksort.cpp:221:68: required from ‘int parallelbamblocksort(const libmaus2::util::ArgInfo&, bool, bool, const string&, bool) [with order_type = libmaus2::bambam::parallel::FragmentAlignmentBufferQueryNameComparator; heap_element_type = libmaus2::bambam::parallel::GenericInputControlMergeHeapEntryQueryName; bool create_dup_mark_info = false; std::__cxx11::string = std::__cxx11::basic_string]’ test/testparallelbamblocksort.cpp:267:4: required from here ./libmaus2/bambam/parallel/BlockMergeControl.hpp:1122:46: warning: left shift count >= width of type [-Wshift-count-overflow] package->subid = ((block->blockid + 1) << 32) | block->subblockid; ~~~~~~~~~~~~~~~~~~~~~~^~~~~~ ./libmaus2/bambam/parallel/BlockMergeControl.hpp:1127:47: warning: left shift count >= width of type [-Wshift-count-overflow] cpackage->subid = ((block->blockid + 1) << 32) | block->subblockid; ~~~~~~~~~~~~~~~~~~~~~~^~~~~~ ./libmaus2/bambam/parallel/BlockMergeControl.hpp: In instantiation of ‘void libmaus2::bambam::parallel::BlockMergeControl<_heap_element_type>::samCheckWritePendingQueue() [with _heap_element_type = libmaus2::bambam::parallel::GenericInputControlMergeHeapEntryCoordinate]’: ./libmaus2/bambam/parallel/BlockMergeControl.hpp:1193:6: required from ‘void libmaus2::bambam::parallel::BlockMergeControl<_heap_element_type>::sam_data_write_function(ssize_t, size_t, const char*, size_t, cram_data_write_block_type) [with _heap_element_type = libmaus2::bambam::parallel::GenericInputControlMergeHeapEntryCoordinate; ssize_t = int; size_t = unsigned int; cram_data_write_block_type = _cram_data_write_block_type]’ ./libmaus2/bambam/parallel/BlockMergeControl.hpp:1249:6: required from ‘static void libmaus2::bambam::parallel::BlockMergeControl<_heap_element_type>::sam_data_write_function(void*, ssize_t, size_t, const char*, size_t, cram_data_write_block_type) [with _heap_element_type = libmaus2::bambam::parallel::GenericInputControlMergeHeapEntryCoordinate; ssize_t = int; size_t = unsigned int; cram_data_write_block_type = _cram_data_write_block_type]’ ./libmaus2/bambam/parallel/BlockMergeControl.hpp:339:49: required from ‘void libmaus2::bambam::parallel::BlockMergeControl<_heap_element_type>::enqueHeader() [with _heap_element_type = libmaus2::bambam::parallel::GenericInputControlMergeHeapEntryCoordinate]’ ./libmaus2/bambam/parallel/BlockMergeControl.hpp:556:6: required from ‘libmaus2::bambam::parallel::BlockMergeControl<_heap_element_type>::BlockMergeControl(libmaus2::parallel::SimpleThreadPool&, std::ostream&, libmaus2::autoarray::AutoArray&, const std::vector&, libmaus2::bitio::BitVector*, int, uint64_t, uint64_t, uint64_t, uint64_t, uint64_t, const string&, const string&, libmaus2::digest::DigestInterface*, libmaus2::bambam::parallel::BlockMergeControlTypeBase::block_merge_output_format_t, bool, bool) [with _heap_element_type = libmaus2::bambam::parallel::GenericInputControlMergeHeapEntryCoordinate; std::ostream = std::basic_ostream; libmaus2::bitio::BitVector = libmaus2::bitio::BitVectorTemplate; uint64_t = long long unsigned int; std::__cxx11::string = std::__cxx11::basic_string]’ test/testparallelbamblocksort.cpp:221:68: required from ‘int parallelbamblocksort(const libmaus2::util::ArgInfo&, bool, bool, const string&, bool) [with order_type = libmaus2::bambam::parallel::FragmentAlignmentBufferPosComparator; heap_element_type = libmaus2::bambam::parallel::GenericInputControlMergeHeapEntryCoordinate; bool create_dup_mark_info = true; std::__cxx11::string = std::__cxx11::basic_string]’ test/testparallelbamblocksort.cpp:277:4: required from here ./libmaus2/bambam/parallel/BlockMergeControl.hpp:1122:46: warning: left shift count >= width of type [-Wshift-count-overflow] package->subid = ((block->blockid + 1) << 32) | block->subblockid; ~~~~~~~~~~~~~~~~~~~~~~^~~~~~ ./libmaus2/bambam/parallel/BlockMergeControl.hpp:1127:47: warning: left shift count >= width of type [-Wshift-count-overflow] cpackage->subid = ((block->blockid + 1) << 32) | block->subblockid; ~~~~~~~~~~~~~~~~~~~~~~^~~~~~ In file included from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/ChecksumsInterface.hpp:22, from ./libmaus2/bambam/ChecksumsFactory.hpp:22, from ./libmaus2/bambam/ChecksumsInterfaceAllocator.hpp:22, from ./libmaus2/bambam/parallel/BlockMergeControl.hpp:27, from test/testparallelbamblocksort.cpp:19: ./libmaus2/autoarray/AutoArray.hpp: In constructor ‘libmaus2::autoarray::AutoArray::AutoArray(uint64_t, bool) [with N = libmaus2::bambam::BamIndexBinChunk; libmaus2::autoarray::alloc_type atype = (libmaus2::autoarray::alloc_type)0; erase_type = libmaus2::autoarray::ArrayErase]’: ./libmaus2/autoarray/AutoArray.hpp:1801:5: warning: ‘’ may be used uninitialized in this function [-Wmaybe-uninitialized] array[i] = N(); ^~~~~ mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/bambam/libmaus2seqchksumsfactory_a-ChecksumsFactory.o `test -f 'libmaus2/bambam/ChecksumsFactory.cpp' || echo './'`libmaus2/bambam/ChecksumsFactory.cpp rm -f libmaus2seqchksumsfactory.a mipsel-linux-gnu-ar cru libmaus2seqchksumsfactory.a libmaus2/bambam/libmaus2seqchksumsfactory_a-ChecksumsFactory.o mipsel-linux-gnu-ar: `u' modifier ignored since `D' is the default (see `U') mipsel-linux-gnu-ranlib libmaus2seqchksumsfactory.a /bin/bash ../libtool --tag=CXX --mode=link mipsel-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -Wl,-z,relro -o testparallelbamblocksort test/testparallelbamblocksort-testparallelbamblocksort.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -ldl libmaus2seqchksumsfactory.a libmaus2digests.a libmaus2digests_sse4.a -lrt -L/usr/lib/mipsel-linux-gnu -lz libtool: link: mipsel-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,relro -o .libs/testparallelbamblocksort test/testparallelbamblocksort-testparallelbamblocksort.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -ldl libmaus2seqchksumsfactory.a libmaus2digests.a libmaus2digests_sse4.a -lrt -L/usr/lib/mipsel-linux-gnu -lz -fopenmp -pthread mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testmapperm-testmapperm.o `test -f 'test/testmapperm.cpp' || echo './'`test/testmapperm.cpp /bin/bash ../libtool --tag=CXX --mode=link mipsel-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testmapperm test/testmapperm-testmapperm.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/mipsel-linux-gnu -lz libtool: link: mipsel-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testmapperm test/testmapperm-testmapperm.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/mipsel-linux-gnu -lz -fopenmp -pthread mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testexternalmemoryindex-testexternalmemoryindex.o `test -f 'test/testexternalmemoryindex.cpp' || echo './'`test/testexternalmemoryindex.cpp /bin/bash ../libtool --tag=CXX --mode=link mipsel-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testexternalmemoryindex test/testexternalmemoryindex-testexternalmemoryindex.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/mipsel-linux-gnu -lz libtool: link: mipsel-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testexternalmemoryindex test/testexternalmemoryindex-testexternalmemoryindex.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/mipsel-linux-gnu -lz -fopenmp -pthread mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testfastqtobam-testfastqtobam.o `test -f 'test/testfastqtobam.cpp' || echo './'`test/testfastqtobam.cpp /bin/bash ../libtool --tag=CXX --mode=link mipsel-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testfastqtobam test/testfastqtobam-testfastqtobam.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/mipsel-linux-gnu -lz libtool: link: mipsel-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testfastqtobam test/testfastqtobam-testfastqtobam.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/mipsel-linux-gnu -lz -fopenmp -pthread mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testsamrecoding-testsamrecoding.o `test -f 'test/testsamrecoding.cpp' || echo './'`test/testsamrecoding.cpp /bin/bash ../libtool --tag=CXX --mode=link mipsel-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testsamrecoding test/testsamrecoding-testsamrecoding.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -ldl -lrt -L/usr/lib/mipsel-linux-gnu -lz libtool: link: mipsel-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testsamrecoding test/testsamrecoding-testsamrecoding.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -ldl -lrt -L/usr/lib/mipsel-linux-gnu -lz -fopenmp -pthread mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testdazzlerdb-testdazzlerdb.o `test -f 'test/testdazzlerdb.cpp' || echo './'`test/testdazzlerdb.cpp In file included from test/testdazzlerdb.cpp:29: ./libmaus2/lcs/NP.hpp: In instantiation of ‘int64_t libmaus2::lcs::NP::npTemplate(iter_a, iter_a, iter_b, iter_b) [with iter_a = const unsigned char*; iter_b = const unsigned char*; bool self_check = true; int64_t = long long int]’: ./libmaus2/lcs/NP.hpp:116:53: required from ‘int64_t libmaus2::lcs::NP::np(iter_a, iter_a, iter_b, iter_b, bool) [with iter_a = const unsigned char*; iter_b = const unsigned char*; int64_t = long long int]’ ./libmaus2/lcs/NP.hpp:104:23: required from here ./libmaus2/lcs/NP.hpp:908:46: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘long long int’ [-Wsign-compare] if ( AlignmentTraceContainer::capacity() <= std::min(an,bn)+ed ) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ ./libmaus2/lcs/NP.hpp: In instantiation of ‘int64_t libmaus2::lcs::NP::npTemplate(iter_a, iter_a, iter_b, iter_b) [with iter_a = const unsigned char*; iter_b = const unsigned char*; bool self_check = false; int64_t = long long int]’: ./libmaus2/lcs/NP.hpp:118:54: required from ‘int64_t libmaus2::lcs::NP::np(iter_a, iter_a, iter_b, iter_b, bool) [with iter_a = const unsigned char*; iter_b = const unsigned char*; int64_t = long long int]’ ./libmaus2/lcs/NP.hpp:104:23: required from here ./libmaus2/lcs/NP.hpp:908:46: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘long long int’ [-Wsign-compare] /bin/bash ../libtool --tag=CXX --mode=link mipsel-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testdazzlerdb test/testdazzlerdb-testdazzlerdb.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -ldl -lrt -L/usr/lib/mipsel-linux-gnu -lz libtool: link: mipsel-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testdazzlerdb test/testdazzlerdb-testdazzlerdb.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -ldl -lrt -L/usr/lib/mipsel-linux-gnu -lz -fopenmp -pthread mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testnd-testnd.o `test -f 'test/testnd.cpp' || echo './'`test/testnd.cpp /bin/bash ../libtool --tag=CXX --mode=link mipsel-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testnd test/testnd-testnd.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -ldl -lrt -L/usr/lib/mipsel-linux-gnu -lz libtool: link: mipsel-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testnd test/testnd-testnd.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -ldl -lrt -L/usr/lib/mipsel-linux-gnu -lz -fopenmp -pthread mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testfastashred-testfastashred.o `test -f 'test/testfastashred.cpp' || echo './'`test/testfastashred.cpp /bin/bash ../libtool --tag=CXX --mode=link mipsel-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testfastashred test/testfastashred-testfastashred.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -ldl -lrt -L/usr/lib/mipsel-linux-gnu -lz libtool: link: mipsel-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testfastashred test/testfastashred-testfastashred.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -ldl -lrt -L/usr/lib/mipsel-linux-gnu -lz -fopenmp -pthread mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testalignerspeed-testalignerspeed.o `test -f 'test/testalignerspeed.cpp' || echo './'`test/testalignerspeed.cpp In file included from ./libmaus2/lcs/NPLinMem.hpp:22, from ./libmaus2/lcs/NNPCor.hpp:24, from test/testalignerspeed.cpp:18: ./libmaus2/lcs/NP.hpp: In instantiation of ‘int64_t libmaus2::lcs::NP::npTemplate(iter_a, iter_a, iter_b, iter_b) [with iter_a = const unsigned char*; iter_b = const unsigned char*; bool self_check = true; int64_t = long long int]’: ./libmaus2/lcs/NP.hpp:116:53: required from ‘int64_t libmaus2::lcs::NP::np(iter_a, iter_a, iter_b, iter_b, bool) [with iter_a = const unsigned char*; iter_b = const unsigned char*; int64_t = long long int]’ ./libmaus2/lcs/NP.hpp:104:23: required from here ./libmaus2/lcs/NP.hpp:908:46: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘long long int’ [-Wsign-compare] if ( AlignmentTraceContainer::capacity() <= std::min(an,bn)+ed ) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ ./libmaus2/lcs/NP.hpp: In instantiation of ‘int64_t libmaus2::lcs::NP::npTemplate(iter_a, iter_a, iter_b, iter_b) [with iter_a = const unsigned char*; iter_b = const unsigned char*; bool self_check = false; int64_t = long long int]’: ./libmaus2/lcs/NP.hpp:118:54: required from ‘int64_t libmaus2::lcs::NP::np(iter_a, iter_a, iter_b, iter_b, bool) [with iter_a = const unsigned char*; iter_b = const unsigned char*; int64_t = long long int]’ ./libmaus2/lcs/NP.hpp:104:23: required from here ./libmaus2/lcs/NP.hpp:908:46: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘long long int’ [-Wsign-compare] /bin/bash ../libtool --tag=CXX --mode=link mipsel-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testalignerspeed test/testalignerspeed-testalignerspeed.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -ldl -lrt -L/usr/lib/mipsel-linux-gnu -lz libtool: link: mipsel-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testalignerspeed test/testalignerspeed-testalignerspeed.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -ldl -lrt -L/usr/lib/mipsel-linux-gnu -lz -fopenmp -pthread mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testfastasingleline-testfastasingleline.o `test -f 'test/testfastasingleline.cpp' || echo './'`test/testfastasingleline.cpp /bin/bash ../libtool --tag=CXX --mode=link mipsel-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testfastasingleline test/testfastasingleline-testfastasingleline.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -ldl -lrt -L/usr/lib/mipsel-linux-gnu -lz libtool: link: mipsel-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testfastasingleline test/testfastasingleline-testfastasingleline.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -ldl -lrt -L/usr/lib/mipsel-linux-gnu -lz -fopenmp -pthread mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testdazzleralignmentrewrite-testdazzleralignmentrewrite.o `test -f 'test/testdazzleralignmentrewrite.cpp' || echo './'`test/testdazzleralignmentrewrite.cpp /bin/bash ../libtool --tag=CXX --mode=link mipsel-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testdazzleralignmentrewrite test/testdazzleralignmentrewrite-testdazzleralignmentrewrite.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -ldl -lrt -L/usr/lib/mipsel-linux-gnu -lz libtool: link: mipsel-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testdazzleralignmentrewrite test/testdazzleralignmentrewrite-testdazzleralignmentrewrite.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -ldl -lrt -L/usr/lib/mipsel-linux-gnu -lz -fopenmp -pthread mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testxz-testxz.o `test -f 'test/testxz.cpp' || echo './'`test/testxz.cpp /bin/bash ../libtool --tag=CXX --mode=link mipsel-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testxz test/testxz-testxz.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -ldl -lrt -L/usr/lib/mipsel-linux-gnu -lz libtool: link: mipsel-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testxz test/testxz-testxz.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -ldl -lrt -L/usr/lib/mipsel-linux-gnu -lz -fopenmp -pthread mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testdazzlerindex-testdazzlerindex.o `test -f 'test/testdazzlerindex.cpp' || echo './'`test/testdazzlerindex.cpp /bin/bash ../libtool --tag=CXX --mode=link mipsel-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testdazzlerindex test/testdazzlerindex-testdazzlerindex.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -ldl -lrt -L/usr/lib/mipsel-linux-gnu -lz libtool: link: mipsel-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testdazzlerindex test/testdazzlerindex-testdazzlerindex.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -ldl -lrt -L/usr/lib/mipsel-linux-gnu -lz -fopenmp -pthread mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testargparser-testargparser.o `test -f 'test/testargparser.cpp' || echo './'`test/testargparser.cpp /bin/bash ../libtool --tag=CXX --mode=link mipsel-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testargparser test/testargparser-testargparser.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -ldl -lrt -L/usr/lib/mipsel-linux-gnu -lz libtool: link: mipsel-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testargparser test/testargparser-testargparser.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -ldl -lrt -L/usr/lib/mipsel-linux-gnu -lz -fopenmp -pthread mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testfragmentenvelope-testfragmentenvelope.o `test -f 'test/testfragmentenvelope.cpp' || echo './'`test/testfragmentenvelope.cpp /bin/bash ../libtool --tag=CXX --mode=link mipsel-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testfragmentenvelope test/testfragmentenvelope-testfragmentenvelope.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -ldl -lrt -L/usr/lib/mipsel-linux-gnu -lz libtool: link: mipsel-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testfragmentenvelope test/testfragmentenvelope-testfragmentenvelope.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -ldl -lrt -L/usr/lib/mipsel-linux-gnu -lz -fopenmp -pthread mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testdnarank-testdnarank.o `test -f 'test/testdnarank.cpp' || echo './'`test/testdnarank.cpp In file included from /usr/mipsel-linux-gnu/include/c++/8/cassert:44, from ./libmaus2/util/IntervalTree.hpp:28, from ./libmaus2/gamma/GammaRLDecoder.hpp:28, from ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:28, from ./libmaus2/wavelet/RlToHwtBase.hpp:30, from test/testdnarank.cpp:29: ./libmaus2/wavelet/RlToHwtBase.hpp: In instantiation of ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtSmallAlphabet(const string&, const libmaus2::huffman::HuffmanTree&, uint64_t) [with entity_type = unsigned char; bool _utf8_input_type = false; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::__cxx11::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’: test/testdnarank.cpp:76:169: required from ‘void testLong(const string&, uint64_t) [with rank_type = libmaus2::rank::DNARankTemplate<64>; std::__cxx11::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’ test/testdnarank.cpp:213:51: required from here ./libmaus2/wavelet/RlToHwtBase.hpp:809:46: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] assert ( symtonodesp-symtonodes.begin() == symtonodevecoffsets[sym] ); /bin/bash ../libtool --tag=CXX --mode=link mipsel-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testdnarank test/testdnarank-testdnarank.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -ldl -lrt -L/usr/lib/mipsel-linux-gnu -lz libtool: link: mipsel-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testdnarank test/testdnarank-testdnarank.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -ldl -lrt -L/usr/lib/mipsel-linux-gnu -lz -fopenmp -pthread mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testlowbits-testlowbits.o `test -f 'test/testlowbits.cpp' || echo './'`test/testlowbits.cpp /bin/bash ../libtool --tag=CXX --mode=link mipsel-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testlowbits test/testlowbits-testlowbits.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -ldl -lrt -L/usr/lib/mipsel-linux-gnu -lz libtool: link: mipsel-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testlowbits test/testlowbits-testlowbits.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -ldl -lrt -L/usr/lib/mipsel-linux-gnu -lz -fopenmp -pthread mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testfastaexplode-testfastaexplode.o `test -f 'test/testfastaexplode.cpp' || echo './'`test/testfastaexplode.cpp /bin/bash ../libtool --tag=CXX --mode=link mipsel-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testfastaexplode test/testfastaexplode-testfastaexplode.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -ldl -lrt -L/usr/lib/mipsel-linux-gnu -lz libtool: link: mipsel-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testfastaexplode test/testfastaexplode-testfastaexplode.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -ldl -lrt -L/usr/lib/mipsel-linux-gnu -lz -fopenmp -pthread mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testfaextract-testfaextract.o `test -f 'test/testfaextract.cpp' || echo './'`test/testfaextract.cpp /bin/bash ../libtool --tag=CXX --mode=link mipsel-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testfaextract test/testfaextract-testfaextract.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -ldl -lrt -L/usr/lib/mipsel-linux-gnu -lz libtool: link: mipsel-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testfaextract test/testfaextract-testfaextract.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -ldl -lrt -L/usr/lib/mipsel-linux-gnu -lz -fopenmp -pthread mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testmurmur3-testmurmur3.o `test -f 'test/testmurmur3.cpp' || echo './'`test/testmurmur3.cpp /bin/bash ../libtool --tag=CXX --mode=link mipsel-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testmurmur3 test/testmurmur3-testmurmur3.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -ldl -lrt -L/usr/lib/mipsel-linux-gnu -lz libtool: link: mipsel-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testmurmur3 test/testmurmur3-testmurmur3.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -ldl -lrt -L/usr/lib/mipsel-linux-gnu -lz -fopenmp -pthread mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testpairalign-testpairalign.o `test -f 'test/testpairalign.cpp' || echo './'`test/testpairalign.cpp In file included from test/testpairalign.cpp:20: ./libmaus2/lcs/NP.hpp: In instantiation of ‘int64_t libmaus2::lcs::NP::npTemplate(iter_a, iter_a, iter_b, iter_b) [with iter_a = const unsigned char*; iter_b = const unsigned char*; bool self_check = true; int64_t = long long int]’: ./libmaus2/lcs/NP.hpp:116:53: required from ‘int64_t libmaus2::lcs::NP::np(iter_a, iter_a, iter_b, iter_b, bool) [with iter_a = const unsigned char*; iter_b = const unsigned char*; int64_t = long long int]’ ./libmaus2/lcs/NP.hpp:104:23: required from here ./libmaus2/lcs/NP.hpp:908:46: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘long long int’ [-Wsign-compare] if ( AlignmentTraceContainer::capacity() <= std::min(an,bn)+ed ) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ ./libmaus2/lcs/NP.hpp: In instantiation of ‘int64_t libmaus2::lcs::NP::npTemplate(iter_a, iter_a, iter_b, iter_b) [with iter_a = const unsigned char*; iter_b = const unsigned char*; bool self_check = false; int64_t = long long int]’: ./libmaus2/lcs/NP.hpp:118:54: required from ‘int64_t libmaus2::lcs::NP::np(iter_a, iter_a, iter_b, iter_b, bool) [with iter_a = const unsigned char*; iter_b = const unsigned char*; int64_t = long long int]’ ./libmaus2/lcs/NP.hpp:104:23: required from here ./libmaus2/lcs/NP.hpp:908:46: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘long long int’ [-Wsign-compare] ./libmaus2/lcs/NP.hpp: In instantiation of ‘int64_t libmaus2::lcs::NP::npTemplate(iter_a, iter_a, iter_b, iter_b) [with iter_a = __gnu_cxx::__normal_iterator >; iter_b = __gnu_cxx::__normal_iterator >; bool self_check = true; int64_t = long long int]’: ./libmaus2/lcs/NP.hpp:116:53: required from ‘int64_t libmaus2::lcs::NP::np(iter_a, iter_a, iter_b, iter_b, bool) [with iter_a = __gnu_cxx::__normal_iterator >; iter_b = __gnu_cxx::__normal_iterator >; int64_t = long long int]’ test/testpairalign.cpp:124:7: required from here ./libmaus2/lcs/NP.hpp:908:46: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘long long int’ [-Wsign-compare] ./libmaus2/lcs/NP.hpp: In instantiation of ‘int64_t libmaus2::lcs::NP::npTemplate(iter_a, iter_a, iter_b, iter_b) [with iter_a = __gnu_cxx::__normal_iterator >; iter_b = __gnu_cxx::__normal_iterator >; bool self_check = false; int64_t = long long int]’: ./libmaus2/lcs/NP.hpp:118:54: required from ‘int64_t libmaus2::lcs::NP::np(iter_a, iter_a, iter_b, iter_b, bool) [with iter_a = __gnu_cxx::__normal_iterator >; iter_b = __gnu_cxx::__normal_iterator >; int64_t = long long int]’ test/testpairalign.cpp:124:7: required from here ./libmaus2/lcs/NP.hpp:908:46: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘long long int’ [-Wsign-compare] In file included from ./libmaus2/index/ExternalMemoryIndexGenerator.hpp:26, from ./libmaus2/dazzler/align/OverlapIndexer.hpp:24, from ./libmaus2/dazzler/align/AlignmentWriter.hpp:21, from test/testpairalign.cpp:24: ./libmaus2/index/ExternalMemoryIndexRecord.hpp: In constructor ‘libmaus2::autoarray::AutoArray::AutoArray(uint64_t, bool) [with N = libmaus2::index::ExternalMemoryIndexRecord; libmaus2::autoarray::alloc_type atype = (libmaus2::autoarray::alloc_type)0; erase_type = libmaus2::autoarray::ArrayErase >]’: ./libmaus2/index/ExternalMemoryIndexRecord.hpp:33:10: warning: ‘.libmaus2::index::ExternalMemoryIndexRecord::D’ may be used uninitialized in this function [-Wmaybe-uninitialized] struct ExternalMemoryIndexRecord ^~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link mipsel-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testpairalign test/testpairalign-testpairalign.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -ldl -lrt -L/usr/lib/mipsel-linux-gnu -lz libtool: link: mipsel-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testpairalign test/testpairalign-testpairalign.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -ldl -lrt -L/usr/lib/mipsel-linux-gnu -lz -fopenmp -pthread mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testsplaytree-testsplaytree.o `test -f 'test/testsplaytree.cpp' || echo './'`test/testsplaytree.cpp /bin/bash ../libtool --tag=CXX --mode=link mipsel-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testsplaytree test/testsplaytree-testsplaytree.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -ldl -lrt -L/usr/lib/mipsel-linux-gnu -lz libtool: link: mipsel-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testsplaytree test/testsplaytree-testsplaytree.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -ldl -lrt -L/usr/lib/mipsel-linux-gnu -lz -fopenmp -pthread mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testbwtconstruction-testbwtconstruction.o `test -f 'test/testbwtconstruction.cpp' || echo './'`test/testbwtconstruction.cpp /bin/bash ../libtool --tag=CXX --mode=link mipsel-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testbwtconstruction test/testbwtconstruction-testbwtconstruction.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -ldl -lrt -L/usr/lib/mipsel-linux-gnu -lz libtool: link: mipsel-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testbwtconstruction test/testbwtconstruction-testbwtconstruction.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -ldl -lrt -L/usr/lib/mipsel-linux-gnu -lz -fopenmp -pthread mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testbwtconstructionfasta-testbwtconstructionfasta.o `test -f 'test/testbwtconstructionfasta.cpp' || echo './'`test/testbwtconstructionfasta.cpp In file included from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.hpp:31, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:47, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from test/testbwtconstructionfasta.cpp:22: ./libmaus2/lcp/WaveletLCP.hpp: In instantiation of ‘static libmaus2::lcp::WaveletLCPResult::unique_ptr_type libmaus2::lcp::WaveletLCP::computeLCP(const lf_type*, uint64_t, bool, std::ostream*) [with lf_type = libmaus2::rank::DNARankTemplate<64>; libmaus2::lcp::WaveletLCPResult::unique_ptr_type = std::unique_ptr >; uint64_t = long long unsigned int; std::ostream = std::basic_ostream]’: test/testbwtconstructionfasta.cpp:57:146: required from here ./libmaus2/lcp/WaveletLCP.hpp:44:20: warning: unused parameter ‘rnumthreads’ [-Wunused-parameter] uint64_t const rnumthreads, ~~~~~~~~~~~~~~~^~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link mipsel-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testbwtconstructionfasta test/testbwtconstructionfasta-testbwtconstructionfasta.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -ldl -lrt -L/usr/lib/mipsel-linux-gnu -lz libtool: link: mipsel-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testbwtconstructionfasta test/testbwtconstructionfasta-testbwtconstructionfasta.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -ldl -lrt -L/usr/lib/mipsel-linux-gnu -lz -fopenmp -pthread mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testarrayinput-testarrayinput.o `test -f 'test/testarrayinput.cpp' || echo './'`test/testarrayinput.cpp /bin/bash ../libtool --tag=CXX --mode=link mipsel-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testarrayinput test/testarrayinput-testarrayinput.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -ldl -lrt -L/usr/lib/mipsel-linux-gnu -lz libtool: link: mipsel-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testarrayinput test/testarrayinput-testarrayinput.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -ldl -lrt -L/usr/lib/mipsel-linux-gnu -lz -fopenmp -pthread mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testhugepages-testhugepages.o `test -f 'test/testhugepages.cpp' || echo './'`test/testhugepages.cpp /bin/bash ../libtool --tag=CXX --mode=link mipsel-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testhugepages test/testhugepages-testhugepages.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -ldl -lrt -L/usr/lib/mipsel-linux-gnu -lz libtool: link: mipsel-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testhugepages test/testhugepages-testhugepages.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -ldl -lrt -L/usr/lib/mipsel-linux-gnu -lz -fopenmp -pthread mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testsymcnt-testsymcnt.o `test -f 'test/testsymcnt.cpp' || echo './'`test/testsymcnt.cpp /bin/bash ../libtool --tag=CXX --mode=link mipsel-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testsymcnt test/testsymcnt-testsymcnt.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -ldl -lrt -L/usr/lib/mipsel-linux-gnu -lz libtool: link: mipsel-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testsymcnt test/testsymcnt-testsymcnt.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -ldl -lrt -L/usr/lib/mipsel-linux-gnu -lz -fopenmp -pthread mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testgammapd-testgammapd.o `test -f 'test/testgammapd.cpp' || echo './'`test/testgammapd.cpp /bin/bash ../libtool --tag=CXX --mode=link mipsel-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testgammapd test/testgammapd-testgammapd.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -ldl -lrt -L/usr/lib/mipsel-linux-gnu -lz libtool: link: mipsel-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testgammapd test/testgammapd-testgammapd.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -ldl -lrt -L/usr/lib/mipsel-linux-gnu -lz -fopenmp -pthread mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testpo-testpo.o `test -f 'test/testpo.cpp' || echo './'`test/testpo.cpp /bin/bash ../libtool --tag=CXX --mode=link mipsel-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testpo test/testpo-testpo.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -ldl -lrt -L/usr/lib/mipsel-linux-gnu -lz libtool: link: mipsel-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testpo test/testpo-testpo.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -ldl -lrt -L/usr/lib/mipsel-linux-gnu -lz -fopenmp -pthread mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testdnasuffixtrav-testdnasuffixtrav.o `test -f 'test/testdnasuffixtrav.cpp' || echo './'`test/testdnasuffixtrav.cpp /bin/bash ../libtool --tag=CXX --mode=link mipsel-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testdnasuffixtrav test/testdnasuffixtrav-testdnasuffixtrav.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -ldl -lrt -L/usr/lib/mipsel-linux-gnu -lz libtool: link: mipsel-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testdnasuffixtrav test/testdnasuffixtrav-testdnasuffixtrav.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -ldl -lrt -L/usr/lib/mipsel-linux-gnu -lz -fopenmp -pthread mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testserialisedsorting-testserialisedsorting.o `test -f 'test/testserialisedsorting.cpp' || echo './'`test/testserialisedsorting.cpp /bin/bash ../libtool --tag=CXX --mode=link mipsel-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testserialisedsorting test/testserialisedsorting-testserialisedsorting.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -ldl -lrt -L/usr/lib/mipsel-linux-gnu -lz libtool: link: mipsel-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testserialisedsorting test/testserialisedsorting-testserialisedsorting.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -ldl -lrt -L/usr/lib/mipsel-linux-gnu -lz -fopenmp -pthread mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testbamnumericalindex-testbamnumericalindex.o `test -f 'test/testbamnumericalindex.cpp' || echo './'`test/testbamnumericalindex.cpp /bin/bash ../libtool --tag=CXX --mode=link mipsel-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testbamnumericalindex test/testbamnumericalindex-testbamnumericalindex.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -ldl -lrt -L/usr/lib/mipsel-linux-gnu -lz libtool: link: mipsel-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testbamnumericalindex test/testbamnumericalindex-testbamnumericalindex.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -ldl -lrt -L/usr/lib/mipsel-linux-gnu -lz -fopenmp -pthread mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testnpl-testnpl.o `test -f 'test/testnpl.cpp' || echo './'`test/testnpl.cpp In file included from test/testnpl.cpp:19: ./libmaus2/lcs/NPL.hpp: In instantiation of ‘libmaus2::lcs::NPL::index_type libmaus2::lcs::NPL::np(iter_a, iter_a, iter_b, iter_b, libmaus2::lcs::NPL::index_type) [with iter_a = const unsigned char*; iter_b = const unsigned char*; libmaus2::lcs::NPL::index_type = long long int]’: ./libmaus2/lcs/NPL.hpp:85:23: required from here ./libmaus2/lcs/NPL.hpp:503:46: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘long long int’ [-Wsign-compare] if ( AlignmentTraceContainer::capacity() <= std::min(an,bn)+ed ) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ In file included from ./libmaus2/lcs/NPLinMem.hpp:22, from test/testnpl.cpp:18: ./libmaus2/lcs/NP.hpp: In instantiation of ‘int64_t libmaus2::lcs::NP::npTemplate(iter_a, iter_a, iter_b, iter_b) [with iter_a = const unsigned char*; iter_b = const unsigned char*; bool self_check = true; int64_t = long long int]’: ./libmaus2/lcs/NP.hpp:116:53: required from ‘int64_t libmaus2::lcs::NP::np(iter_a, iter_a, iter_b, iter_b, bool) [with iter_a = const unsigned char*; iter_b = const unsigned char*; int64_t = long long int]’ ./libmaus2/lcs/NP.hpp:104:23: required from here ./libmaus2/lcs/NP.hpp:908:46: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘long long int’ [-Wsign-compare] if ( AlignmentTraceContainer::capacity() <= std::min(an,bn)+ed ) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ ./libmaus2/lcs/NP.hpp: In instantiation of ‘int64_t libmaus2::lcs::NP::npTemplate(iter_a, iter_a, iter_b, iter_b) [with iter_a = const unsigned char*; iter_b = const unsigned char*; bool self_check = false; int64_t = long long int]’: ./libmaus2/lcs/NP.hpp:118:54: required from ‘int64_t libmaus2::lcs::NP::np(iter_a, iter_a, iter_b, iter_b, bool) [with iter_a = const unsigned char*; iter_b = const unsigned char*; int64_t = long long int]’ ./libmaus2/lcs/NP.hpp:104:23: required from here ./libmaus2/lcs/NP.hpp:908:46: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘long long int’ [-Wsign-compare] ./libmaus2/lcs/NP.hpp: In instantiation of ‘int64_t libmaus2::lcs::NP::npTemplate(iter_a, iter_a, iter_b, iter_b) [with iter_a = __gnu_cxx::__normal_iterator >; iter_b = __gnu_cxx::__normal_iterator >; bool self_check = true; int64_t = long long int]’: ./libmaus2/lcs/NP.hpp:116:53: required from ‘int64_t libmaus2::lcs::NP::np(iter_a, iter_a, iter_b, iter_b, bool) [with iter_a = __gnu_cxx::__normal_iterator >; iter_b = __gnu_cxx::__normal_iterator >; int64_t = long long int]’ test/testnpl.cpp:53:4: required from here ./libmaus2/lcs/NP.hpp:908:46: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘long long int’ [-Wsign-compare] ./libmaus2/lcs/NP.hpp: In instantiation of ‘int64_t libmaus2::lcs::NP::npTemplate(iter_a, iter_a, iter_b, iter_b) [with iter_a = __gnu_cxx::__normal_iterator >; iter_b = __gnu_cxx::__normal_iterator >; bool self_check = false; int64_t = long long int]’: ./libmaus2/lcs/NP.hpp:118:54: required from ‘int64_t libmaus2::lcs::NP::np(iter_a, iter_a, iter_b, iter_b, bool) [with iter_a = __gnu_cxx::__normal_iterator >; iter_b = __gnu_cxx::__normal_iterator >; int64_t = long long int]’ test/testnpl.cpp:53:4: required from here ./libmaus2/lcs/NP.hpp:908:46: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘long long int’ [-Wsign-compare] /bin/bash ../libtool --tag=CXX --mode=link mipsel-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z,relro -o testnpl test/testnpl-testnpl.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -ldl -lrt -L/usr/lib/mipsel-linux-gnu -lz libtool: link: mipsel-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -Wl,-z -Wl,relro -o .libs/testnpl test/testnpl-testnpl.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -ldl -lrt -L/usr/lib/mipsel-linux-gnu -lz -fopenmp -pthread mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testkcnt-testkcnt.o `test -f 'test/testkcnt.cpp' || echo './'`test/testkcnt.cpp In file included from test/testkcnt.cpp:18: ./libmaus2/fastx/KmerCount.hpp: In member function ‘void libmaus2::fastx::KmerCount::fill8(const string&, unsigned int, std::__cxx11::string)’: ./libmaus2/fastx/KmerCount.hpp:555:26: error: ‘setBitSync’ is not a member of ‘libmaus2::bitio’ libmaus2::bitio::setBitSync(O8.begin(),SWDBf.buffer); ^~~~~~~~~~ ./libmaus2/fastx/KmerCount.hpp:555:26: note: suggested alternative: ‘setBit’ libmaus2::bitio::setBitSync(O8.begin(),SWDBf.buffer); ^~~~~~~~~~ setBit ./libmaus2/fastx/KmerCount.hpp:560:26: error: ‘setBitSync’ is not a member of ‘libmaus2::bitio’ libmaus2::bitio::setBitSync(O8.begin(),SWDBr.buffer); ^~~~~~~~~~ ./libmaus2/fastx/KmerCount.hpp:560:26: note: suggested alternative: ‘setBit’ libmaus2::bitio::setBitSync(O8.begin(),SWDBr.buffer); ^~~~~~~~~~ setBit make[3]: *** [Makefile:10853: test/testkcnt-testkcnt.o] Error 1 make[3]: Leaving directory '/<>/src' make[2]: *** [Makefile:680: all-recursive] Error 1 make[2]: Leaving directory '/<>' make[1]: *** [Makefile:556: all] Error 2 make[1]: Leaving directory '/<>' dh_auto_build: make -j1 returned exit code 2 make: *** [debian/rules:12: build-arch] Error 255 dpkg-buildpackage: error: debian/rules build-arch subprocess returned exit status 2 -------------------------------------------------------------------------------- Build finished at 2019-08-04T14:32:10Z Finished -------- +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use E: Build failure (dpkg-buildpackage died) +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 1641420 Build-Time: 3200 Distribution: unstable Fail-Stage: build Foreign Architectures: mipsel Host Architecture: mipsel Install-Time: 25 Job: libmaus2_2.0.611-1 Machine Architecture: amd64 Package: libmaus2 Package-Time: 3237 Source-Version: 2.0.611-1 Space: 1641420 Status: attempted Version: 2.0.611-1 -------------------------------------------------------------------------------- Finished at 2019-08-04T14:32:10Z Build needed 00:53:57, 1641420k disk space