sbuild (Debian sbuild) 0.89.3+deb13u4 (28 December 2025) on debian-ci-siliconvalley +==============================================================================+ | libmaus2 2.0.813+ds-6 (armhf) Thu, 10 Sep 2026 10:34:51 +0000 | +==============================================================================+ Package: libmaus2 Version: 2.0.813+ds-6 Source Version: 2.0.813+ds-6 Distribution: unstable Machine Architecture: amd64 Host Architecture: armhf Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: Unpacking /home/crossqa/.cache/sbuild/unstable-amd64-sbuild.tar.zst to /tmp/tmp.sbuild.zbzb4hYulq... I: Setting up the chroot... I: Creating chroot session... I: Setting up log color... I: Setting up apt archive... +------------------------------------------------------------------------------+ | Update chroot Thu, 10 Sep 2026 10:34:56 +0000 | +------------------------------------------------------------------------------+ Get:1 http://localhost:3142/debian unstable InRelease [193 kB] Get:2 http://localhost:3142/debian unstable/main Sources [11.9 MB] Get:3 http://localhost:3142/debian unstable/main amd64 Packages [10.8 MB] Get:4 http://localhost:3142/debian unstable/main armhf Packages [10.1 MB] Fetched 33.0 MB in 3s (12.3 MB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: dpkg dpkg-dev libdpkg-perl 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 2869 kB of archives. After this operation, 2048 B disk space will be freed. Get:1 http://localhost:3142/debian unstable/main amd64 dpkg amd64 1.23.11 [1214 kB] Get:2 http://localhost:3142/debian unstable/main amd64 dpkg-dev all 1.23.11 [1005 kB] Get:3 http://localhost:3142/debian unstable/main amd64 libdpkg-perl all 1.23.11 [650 kB] Fetched 2869 kB in 0s (138 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12038 files and directories currently installed.) Preparing to unpack .../dpkg_1.23.11_amd64.deb ... Unpacking dpkg (1.23.11) over (1.23.10) ... Setting up dpkg (1.23.11) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12038 files and directories currently installed.) Preparing to unpack .../dpkg-dev_1.23.11_all.deb ... Unpacking dpkg-dev (1.23.11) over (1.23.10) ... Preparing to unpack .../libdpkg-perl_1.23.11_all.deb ... Unpacking libdpkg-perl (1.23.11) over (1.23.10) ... Setting up libdpkg-perl (1.23.11) ... Setting up dpkg-dev (1.23.11) ... +------------------------------------------------------------------------------+ | Fetch source files Thu, 10 Sep 2026 10:35:01 +0000 | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'libmaus2' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/libmaus2.git Please use: git clone https://salsa.debian.org/med-team/libmaus2.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 1669 kB of source archives. Get:1 http://localhost:3142/debian unstable/main libmaus2 2.0.813+ds-6 (dsc) [2315 B] Get:2 http://localhost:3142/debian unstable/main libmaus2 2.0.813+ds-6 (tar) [1656 kB] Get:3 http://localhost:3142/debian unstable/main libmaus2 2.0.813+ds-6 (diff) [10.3 kB] Fetched 1669 kB in 1s (2470 kB/s) Download complete and in download only mode +------------------------------------------------------------------------------+ | Install package build dependencies Thu, 10 Sep 2026 10:35:02 +0000 | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 14), d-shlibs, libboost-atomic-dev, libsecrecy-dev, pkgconf, zlib1g-dev, libc-dev, libstdc++-dev, build-essential:amd64, crossbuild-essential-armhf:amd64, apt-utils:amd64, libc-dev:armhf, libstdc++-dev:armhf Filtered Build-Depends: debhelper-compat (= 14), d-shlibs, libboost-atomic-dev, libsecrecy-dev, pkgconf, zlib1g-dev, libc-dev, libstdc++-dev, build-essential:amd64, crossbuild-essential-armhf:amd64, apt-utils:amd64, libc-dev:armhf, libstdc++-dev:armhf dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/build/reproducible-path/resolver-3OEMi9/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/build/reproducible-path/resolver-3OEMi9/apt_archive ./ InRelease Get:2 copy:/build/reproducible-path/resolver-3OEMi9/apt_archive ./ Release [609 B] Ign:3 copy:/build/reproducible-path/resolver-3OEMi9/apt_archive ./ Release.gpg Get:4 copy:/build/reproducible-path/resolver-3OEMi9/apt_archive ./ Sources [783 B] Get:5 copy:/build/reproducible-path/resolver-3OEMi9/apt_archive ./ Packages [826 B] Fetched 2218 B in 0s (0 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Execute external solver... The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-arm-linux-gnueabihf bsdextrautils cpp-16-arm-linux-gnueabihf cpp-arm-linux-gnueabihf crossbuild-essential-armhf d-shlibs debhelper dh-autoreconf dh-strip-nondeterminism dirmngr dwz file g++-16-arm-linux-gnueabihf g++-arm-linux-gnueabihf gcc-16-arm-linux-gnueabihf gcc-16-arm-linux-gnueabihf-base gcc-16-base:armhf gcc-16-cross-base gcc-arm-linux-gnueabihf gettext gettext-base gnupg gnupg-l10n gpg gpg-agent gpgconf gpgsm groff-base intltool-debian libarchive-zip-perl libasan8:armhf libasan8-armhf-cross libassuan-dev:armhf libassuan9 libassuan9:armhf libatomic1:armhf libatomic1-armhf-cross libboost-atomic-dev:armhf libboost-atomic1.90-dev:armhf libboost-atomic1.90.0:armhf libboost1.90-dev:armhf libc-gconv-modules-extra:armhf libc6:armhf libc6-armhf-cross libc6-dev:armhf libc6-dev-armhf-cross libdebhelper-perl libelf1t64 libffi8 libfile-stripnondeterminism-perl libgcc-16-dev:armhf libgcc-16-dev-armhf-cross libgcc-s1:armhf libgcc-s1-armhf-cross libgcrypt20 libgmp-dev:armhf libgmp10:armhf libgmpxx4ldbl:armhf libgnutls30t64 libgomp1:armhf libgomp1-armhf-cross libgpg-error-dev:armhf libgpg-error0 libgpg-error0:armhf libgpgme-dev:armhf libgpgme45:armhf libhogweed6t64:armhf libidn2-0 libksba8 libldap2 libmagic-mgc libmagic1t64 libncursesw6 libnettle8t64:armhf libnpth0t64 libp11-kit0 libpipeline1 libpkgconf7 libreadline8t64 libsasl2-2 libsasl2-modules-db libsecrecy-dev:armhf libsqlite3-0 libstdc++-16-dev:armhf libstdc++-16-dev-armhf-cross libstdc++6:armhf libstdc++6-armhf-cross libtasn1-6 libtool libubsan1:armhf libubsan1-armhf-cross libuchardet0 libunistring5 libxml2-16 linux-libc-dev-armhf-cross m4 man-db nettle-dev:armhf pinentry-curses pkgconf:armhf pkgconf-bin po-debconf readline-common sensible-utils zlib1g:armhf zlib1g-dev:armhf Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc gcc-16-locales cpp-16-doc cpp-doc dh-make dbus-user-session libpam-systemd pinentry-gnome3 tor gcc-16-doc manpages-dev flex bison gdb-arm-linux-gnueabihf gcc-doc gettext-doc libasprintf-dev libgettextpo-dev gnulib-l10n gpg-wks-server parcimonie xloadimage scdaemon tpm2daemon groff libboost1.90-doc:armhf libboost-chrono1.90-dev:armhf libboost-container1.90-dev:armhf libboost-context1.90-dev:armhf libboost-contract1.90-dev:armhf libboost-coroutine1.90-dev:armhf libboost-date-time1.90-dev:armhf libboost-exception1.90-dev:armhf libboost-fiber1.90-dev:armhf libboost-filesystem1.90-dev:armhf libboost-graph-parallel1.90-dev:armhf libboost-graph1.90-dev:armhf libboost-iostreams1.90-dev:armhf libboost-json1.90-dev:armhf libboost-locale1.90-dev:armhf libboost-log1.90-dev:armhf libboost-math1.90-dev:armhf libboost-mpi-python1.90-dev:armhf libboost-mpi1.90-dev:armhf libboost-nowide1.90-dev:armhf libboost-numpy1.90-dev:armhf libboost-program-options1.90-dev:armhf libboost-python1.90-dev:armhf libboost-random1.90-dev:armhf libboost-regex1.90-dev:armhf libboost-serialization1.90-dev:armhf libboost-stacktrace1.90-dev:armhf libboost-test1.90-dev:armhf libboost-thread1.90-dev:armhf libboost-timer1.90-dev:armhf libboost-type-erasure1.90-dev:armhf libboost-url1.90-dev:armhf libboost-wave1.90-dev:armhf libboost1.90-tools-dev:armhf libmpfrc++-dev:armhf libntl-dev:armhf glibc-doc:armhf libc-l10n:armhf locales:armhf libnss-nis:armhf manpages-dev:armhf rng-tools gmp-doc:armhf libgmp10-doc:armhf libmpfr-dev:armhf gnutls-bin libstdc++-16-doc:armhf libtool-doc gfortran | fortran95-compiler m4-doc apparmor less www-browser pinentry-doc libmail-box-perl readline-doc Recommended packages: curl | wget | lynx python3:any python3-requests gnupg-utils gpg-wks-client gpgv libidn2-0:armhf libarchive-cpio-perl libgpg-error-l10n libgpg-error-l10n:armhf gpg-wks-client:armhf libldap-common libgpm2 libsasl2-modules libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-arm-linux-gnueabihf bsdextrautils cpp-16-arm-linux-gnueabihf cpp-arm-linux-gnueabihf crossbuild-essential-armhf d-shlibs debhelper dh-autoreconf dh-strip-nondeterminism dirmngr dwz file g++-16-arm-linux-gnueabihf g++-arm-linux-gnueabihf gcc-16-arm-linux-gnueabihf gcc-16-arm-linux-gnueabihf-base gcc-16-base:armhf gcc-16-cross-base gcc-arm-linux-gnueabihf gettext gettext-base gnupg gnupg-l10n gpg gpg-agent gpgconf gpgsm groff-base intltool-debian libarchive-zip-perl libasan8:armhf libasan8-armhf-cross libassuan-dev:armhf libassuan9 libassuan9:armhf libatomic1:armhf libatomic1-armhf-cross libboost-atomic-dev:armhf libboost-atomic1.90-dev:armhf libboost-atomic1.90.0:armhf libboost1.90-dev:armhf libc-gconv-modules-extra:armhf libc6:armhf libc6-armhf-cross libc6-dev:armhf libc6-dev-armhf-cross libdebhelper-perl libelf1t64 libffi8 libfile-stripnondeterminism-perl libgcc-16-dev:armhf libgcc-16-dev-armhf-cross libgcc-s1:armhf libgcc-s1-armhf-cross libgcrypt20 libgmp-dev:armhf libgmp10:armhf libgmpxx4ldbl:armhf libgnutls30t64 libgomp1:armhf libgomp1-armhf-cross libgpg-error-dev:armhf libgpg-error0 libgpg-error0:armhf libgpgme-dev:armhf libgpgme45:armhf libhogweed6t64:armhf libidn2-0 libksba8 libldap2 libmagic-mgc libmagic1t64 libncursesw6 libnettle8t64:armhf libnpth0t64 libp11-kit0 libpipeline1 libpkgconf7 libreadline8t64 libsasl2-2 libsasl2-modules-db libsecrecy-dev:armhf libsqlite3-0 libstdc++-16-dev:armhf libstdc++-16-dev-armhf-cross libstdc++6:armhf libstdc++6-armhf-cross libtasn1-6 libtool libubsan1:armhf libubsan1-armhf-cross libuchardet0 libunistring5 libxml2-16 linux-libc-dev-armhf-cross m4 man-db nettle-dev:armhf pinentry-curses pkgconf:armhf pkgconf-bin po-debconf readline-common sbuild-build-depends-main-dummy:armhf sensible-utils zlib1g:armhf zlib1g-dev:armhf 0 upgraded, 111 newly installed, 0 to remove and 0 not upgraded. Need to get 314 MB of archives. After this operation, 1271 MB of additional disk space will be used. Get:1 copy:/build/reproducible-path/resolver-3OEMi9/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [940 B] Get:2 http://localhost:3142/debian unstable/main amd64 readline-common all 8.3-4 [74.8 kB] Get:3 http://localhost:3142/debian unstable/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get:4 http://localhost:3142/debian unstable/main amd64 libmagic-mgc amd64 1:5.47-4 [345 kB] Get:5 http://localhost:3142/debian unstable/main amd64 libmagic1t64 amd64 1:5.47-4 [111 kB] Get:6 http://localhost:3142/debian unstable/main amd64 file amd64 1:5.47-4 [43.0 kB] Get:7 http://localhost:3142/debian unstable/main amd64 gettext-base amd64 1.0-4 [333 kB] Get:8 http://localhost:3142/debian unstable/main amd64 libuchardet0 amd64 0.0.8-2+b2 [69.0 kB] Get:9 http://localhost:3142/debian unstable/main amd64 groff-base amd64 1.24.1-1 [1336 kB] Get:10 http://localhost:3142/debian unstable/main amd64 bsdextrautils amd64 2.42.3-1 [102 kB] Get:11 http://localhost:3142/debian unstable/main amd64 libpipeline1 amd64 1.5.8-3 [49.2 kB] Get:12 http://localhost:3142/debian unstable/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get:13 http://localhost:3142/debian unstable/main amd64 m4 amd64 1.4.21-1 [332 kB] Get:14 http://localhost:3142/debian unstable/main amd64 autoconf all 2.73-2 [516 kB] Get:15 http://localhost:3142/debian unstable/main amd64 autotools-dev all 20240727.1+nmu1 [60.0 kB] Get:16 http://localhost:3142/debian unstable/main amd64 automake all 1:1.18.1-4 [877 kB] Get:17 http://localhost:3142/debian unstable/main amd64 autopoint all 1.0-4 [820 kB] Get:18 http://localhost:3142/debian unstable/main amd64 binutils-arm-linux-gnueabihf amd64 2.47-4 [1620 kB] Get:19 http://localhost:3142/debian unstable/main amd64 gcc-16-arm-linux-gnueabihf-base amd64 16.2.0-2cross1 [38.6 kB] Get:20 http://localhost:3142/debian unstable/main amd64 cpp-16-arm-linux-gnueabihf amd64 16.2.0-2cross1 [78.6 MB] Get:21 http://localhost:3142/debian unstable/main amd64 cpp-arm-linux-gnueabihf amd64 4:16.1.0-3 [4476 B] Get:22 http://localhost:3142/debian unstable/main amd64 gcc-16-cross-base all 16.2.0-2cross1 [34.1 kB] Get:23 http://localhost:3142/debian unstable/main amd64 libc6-armhf-cross all 2.43-3cross8 [1305 kB] Get:24 http://localhost:3142/debian unstable/main amd64 libgcc-s1-armhf-cross all 16.2.0-2cross1 [45.1 kB] Get:25 http://localhost:3142/debian unstable/main amd64 libgomp1-armhf-cross all 16.2.0-2cross1 [119 kB] Get:26 http://localhost:3142/debian unstable/main amd64 libatomic1-armhf-cross all 16.2.0-2cross1 [7252 B] Get:27 http://localhost:3142/debian unstable/main amd64 libasan8-armhf-cross all 16.2.0-2cross1 [2688 kB] Get:28 http://localhost:3142/debian unstable/main amd64 libstdc++6-armhf-cross all 16.2.0-2cross1 [638 kB] Get:29 http://localhost:3142/debian unstable/main amd64 libubsan1-armhf-cross all 16.2.0-2cross1 [1089 kB] Get:30 http://localhost:3142/debian unstable/main amd64 libgcc-16-dev-armhf-cross all 16.2.0-2cross1 [783 kB] Get:31 http://localhost:3142/debian unstable/main amd64 gcc-16-arm-linux-gnueabihf amd64 16.2.0-2cross1 [87.8 MB] Get:32 http://localhost:3142/debian unstable/main amd64 gcc-arm-linux-gnueabihf amd64 4:16.1.0-3 [1448 B] Get:33 http://localhost:3142/debian unstable/main amd64 linux-libc-dev-armhf-cross all 7.1.13-1 [12.1 kB] Get:34 http://localhost:3142/debian unstable/main amd64 libc6-dev-armhf-cross all 2.43-3cross8 [1396 kB] Get:35 http://localhost:3142/debian unstable/main amd64 libstdc++-16-dev-armhf-cross all 16.2.0-2cross1 [2624 kB] Get:36 http://localhost:3142/debian unstable/main amd64 g++-16-arm-linux-gnueabihf amd64 16.2.0-2cross1 [84.5 MB] Get:37 http://localhost:3142/debian unstable/main amd64 g++-arm-linux-gnueabihf amd64 4:16.1.0-3 [1204 B] Get:38 http://localhost:3142/debian unstable/main amd64 crossbuild-essential-armhf all 12.12 [3548 B] Get:39 http://localhost:3142/debian unstable/main amd64 d-shlibs all 0.110 [10.1 kB] Get:40 http://localhost:3142/debian unstable/main amd64 libdebhelper-perl all 14.3 [77.3 kB] Get:41 http://localhost:3142/debian unstable/main amd64 libtool all 2.6.2-2 [553 kB] Get:42 http://localhost:3142/debian unstable/main amd64 dh-autoreconf all 23 [12.7 kB] Get:43 http://localhost:3142/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:44 http://localhost:3142/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.15.1-1 [17.1 kB] Get:45 http://localhost:3142/debian unstable/main amd64 dh-strip-nondeterminism all 1.15.1-1 [6020 B] Get:46 http://localhost:3142/debian unstable/main amd64 libelf1t64 amd64 0.196-1 [61.2 kB] Get:47 http://localhost:3142/debian unstable/main amd64 dwz amd64 0.17-1 [109 kB] Get:48 http://localhost:3142/debian unstable/main amd64 libunistring5 amd64 1.4.2-1 [480 kB] Get:49 http://localhost:3142/debian unstable/main amd64 libxml2-16 amd64 2.15.4+dfsg-1 [683 kB] Get:50 http://localhost:3142/debian unstable/main amd64 gettext amd64 1.0-4 [2702 kB] Get:51 http://localhost:3142/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get:52 http://localhost:3142/debian unstable/main amd64 po-debconf all 1.0.22 [216 kB] Get:53 http://localhost:3142/debian unstable/main amd64 debhelper all 14.3 [934 kB] Get:54 http://localhost:3142/debian unstable/main amd64 libgpg-error0 amd64 1.61-5 [93.1 kB] Get:55 http://localhost:3142/debian unstable/main amd64 libassuan9 amd64 3.0.2-2+b2 [60.7 kB] Get:56 http://localhost:3142/debian unstable/main amd64 libgcrypt20 amd64 1.12.3-2 [934 kB] Get:57 http://localhost:3142/debian unstable/main amd64 libreadline8t64 amd64 8.3-4 [181 kB] Get:58 http://localhost:3142/debian unstable/main amd64 gpgconf amd64 2.4.9-7+b1 [130 kB] Get:59 http://localhost:3142/debian unstable/main amd64 libidn2-0 amd64 2.3.8-5 [109 kB] Get:60 http://localhost:3142/debian unstable/main amd64 libffi8 amd64 3.8.0-2 [32.5 kB] Get:61 http://localhost:3142/debian unstable/main amd64 libp11-kit0 amd64 0.26.5-1 [482 kB] Get:62 http://localhost:3142/debian unstable/main amd64 libtasn1-6 amd64 4.21.0-2+b1 [49.3 kB] Get:63 http://localhost:3142/debian unstable/main amd64 libgnutls30t64 amd64 3.8.13-1 [1546 kB] Get:64 http://localhost:3142/debian unstable/main amd64 libksba8 amd64 1.8.1-1 [147 kB] Get:65 http://localhost:3142/debian unstable/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-11 [17.2 kB] Get:66 http://localhost:3142/debian unstable/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-11 [55.2 kB] Get:67 http://localhost:3142/debian unstable/main amd64 libldap2 amd64 2.6.14+dfsg-2 [200 kB] Get:68 http://localhost:3142/debian unstable/main amd64 libnpth0t64 amd64 1.8-3+b2 [23.2 kB] Get:69 http://localhost:3142/debian unstable/main amd64 dirmngr amd64 2.4.9-7+b1 [397 kB] Get:70 http://localhost:3142/debian unstable/main armhf gcc-16-base armhf 16.2.0-2 [38.4 kB] Get:71 http://localhost:3142/debian unstable/main amd64 gnupg-l10n all 2.4.9-7 [748 kB] Get:72 http://localhost:3142/debian unstable/main amd64 libsqlite3-0 amd64 3.53.4-2 [974 kB] Get:73 http://localhost:3142/debian unstable/main amd64 gpg amd64 2.4.9-7+b1 [665 kB] Get:74 http://localhost:3142/debian unstable/main amd64 libncursesw6 amd64 6.6+20260608-2 [137 kB] Get:75 http://localhost:3142/debian unstable/main amd64 pinentry-curses amd64 1.3.3-3 [91.8 kB] Get:76 http://localhost:3142/debian unstable/main amd64 gpg-agent amd64 2.4.9-7+b1 [282 kB] Get:77 http://localhost:3142/debian unstable/main amd64 gpgsm amd64 2.4.9-7+b1 [285 kB] Get:78 http://localhost:3142/debian unstable/main amd64 gnupg all 2.4.9-7 [415 kB] Get:79 http://localhost:3142/debian unstable/main armhf libgcc-s1 armhf 16.2.0-2 [45.1 kB] Get:80 http://localhost:3142/debian unstable/main armhf libc-gconv-modules-extra armhf 2.43-5 [1139 kB] Get:81 http://localhost:3142/debian unstable/main armhf libc6 armhf 2.43-5 [1540 kB] Get:82 http://localhost:3142/debian unstable/main armhf libasan8 armhf 16.2.0-2 [2699 kB] Get:83 http://localhost:3142/debian unstable/main armhf libgpg-error0 armhf 1.61-5 [77.5 kB] Get:84 http://localhost:3142/debian unstable/main armhf libassuan9 armhf 3.0.2-2+b2 [54.0 kB] Get:85 http://localhost:3142/debian unstable/main armhf libgpg-error-dev armhf 1.61-5 [139 kB] Get:86 http://localhost:3142/debian unstable/main armhf libassuan-dev armhf 3.0.2-2+b2 [113 kB] Get:87 http://localhost:3142/debian unstable/main armhf libatomic1 armhf 16.2.0-2 [7116 B] Get:88 http://localhost:3142/debian unstable/main armhf libgomp1 armhf 16.2.0-2 [119 kB] Get:89 http://localhost:3142/debian unstable/main armhf libstdc++6 armhf 16.2.0-2 [662 kB] Get:90 http://localhost:3142/debian unstable/main armhf libubsan1 armhf 16.2.0-2 [1090 kB] Get:91 http://localhost:3142/debian unstable/main armhf libgcc-16-dev armhf 16.2.0-2 [791 kB] Get:92 http://localhost:3142/debian unstable/main armhf libc6-dev armhf 2.43-5 [1402 kB] Get:93 http://localhost:3142/debian unstable/main armhf libstdc++-16-dev armhf 16.2.0-2 [2658 kB] Get:94 http://localhost:3142/debian unstable/main armhf libboost1.90-dev armhf 1.90.0-6.1+b1 [11.3 MB] Get:95 http://localhost:3142/debian unstable/main armhf libboost-atomic1.90.0 armhf 1.90.0-6.1+b1 [226 kB] Get:96 http://localhost:3142/debian unstable/main armhf libboost-atomic1.90-dev armhf 1.90.0-6.1+b1 [227 kB] Get:97 http://localhost:3142/debian unstable/main armhf libboost-atomic-dev armhf 1.90.0.2+nmu1 [3296 B] Get:98 http://localhost:3142/debian unstable/main armhf libgmp10 armhf 2:6.3.0+dfsg-5+b2 [513 kB] Get:99 http://localhost:3142/debian unstable/main armhf libgmpxx4ldbl armhf 2:6.3.0+dfsg-5+b2 [327 kB] Get:100 http://localhost:3142/debian unstable/main armhf libgmp-dev armhf 2:6.3.0+dfsg-5+b2 [593 kB] Get:101 http://localhost:3142/debian unstable/main armhf libgpgme45 armhf 2.2.0-2 [331 kB] Get:102 http://localhost:3142/debian unstable/main armhf libgpgme-dev armhf 2.2.0-2 [555 kB] Get:103 http://localhost:3142/debian unstable/main armhf libnettle8t64 armhf 3.10.2-1+b1 [311 kB] Get:104 http://localhost:3142/debian unstable/main armhf libhogweed6t64 armhf 3.10.2-1+b1 [322 kB] Get:105 http://localhost:3142/debian unstable/main amd64 libpkgconf7 amd64 2.5.1-4 [47.8 kB] Get:106 http://localhost:3142/debian unstable/main amd64 pkgconf-bin amd64 2.5.1-4 [35.9 kB] Get:107 http://localhost:3142/debian unstable/main armhf pkgconf armhf 2.5.1-4 [33.6 kB] Get:108 http://localhost:3142/debian unstable/main armhf nettle-dev armhf 3.10.2-1+b1 [1314 kB] Get:109 http://localhost:3142/debian unstable/main armhf libsecrecy-dev armhf 0.0.5+ds-5 [21.3 kB] Get:110 http://localhost:3142/debian unstable/main armhf zlib1g armhf 1:1.3.dfsg+really1.3.2-3 [77.0 kB] Get:111 http://localhost:3142/debian unstable/main armhf zlib1g-dev armhf 1:1.3.dfsg+really1.3.2-3 [904 kB] Preconfiguring packages ... Fetched 314 MB in 2s (190 MB/s) Selecting previously unselected package readline-common. (Reading database ... 12038 files and directories currently installed.) Preparing to unpack .../000-readline-common_8.3-4_all.deb ... Unpacking readline-common (8.3-4) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../001-sensible-utils_0.0.26_all.deb ... Unpacking sensible-utils (0.0.26) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../002-libmagic-mgc_1%3a5.47-4_amd64.deb ... Unpacking libmagic-mgc (1:5.47-4) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../003-libmagic1t64_1%3a5.47-4_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.47-4) ... Selecting previously unselected package file. Preparing to unpack .../004-file_1%3a5.47-4_amd64.deb ... Unpacking file (1:5.47-4) ... Selecting previously unselected package gettext-base. Preparing to unpack .../005-gettext-base_1.0-4_amd64.deb ... 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Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.3-4) ... Selecting previously unselected package gpgconf. Preparing to unpack .../056-gpgconf_2.4.9-7+b1_amd64.deb ... Unpacking gpgconf (2.4.9-7+b1) ... Selecting previously unselected package libidn2-0:amd64. Preparing to unpack .../057-libidn2-0_2.3.8-5_amd64.deb ... Unpacking libidn2-0:amd64 (2.3.8-5) ... Selecting previously unselected package libffi8:amd64. 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Setting up libldap2:amd64 (2.6.14+dfsg-2) ... Setting up automake (1:1.18.1-4) ... update-alternatives: using /usr/bin/automake-1.18 to provide /usr/bin/automake (automake) in auto mode Setting up libksba8:amd64 (1.8.1-1) ... Setting up pinentry-curses (1.3.3-3) ... Setting up libgomp1-armhf-cross (16.2.0-2cross1) ... Setting up libfile-stripnondeterminism-perl (1.15.1-1) ... Setting up gettext (1.0-4) ... Setting up libtool (2.6.2-2) ... Setting up libgcc-s1-armhf-cross (16.2.0-2cross1) ... Setting up libc6-dev-armhf-cross (2.43-3cross8) ... Setting up libidn2-0:amd64 (2.3.8-5) ... Setting up libatomic1-armhf-cross (16.2.0-2cross1) ... Setting up pkgconf:armhf (2.5.1-4) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (23) ... Setting up libstdc++6-armhf-cross (16.2.0-2cross1) ... Setting up cpp-16-arm-linux-gnueabihf (16.2.0-2cross1) ... Setting up libp11-kit0:amd64 (0.26.5-1) ... Setting up libubsan1-armhf-cross (16.2.0-2cross1) ... Setting up libreadline8t64:amd64 (8.3-4) ... Setting up dh-strip-nondeterminism (1.15.1-1) ... Setting up groff-base (1.24.1-1) ... Setting up gpgconf (2.4.9-7+b1) ... Setting up gpg (2.4.9-7+b1) ... Setting up cpp-arm-linux-gnueabihf (4:16.1.0-3) ... Setting up libgnutls30t64:amd64 (3.8.13-1) ... Setting up libasan8-armhf-cross (16.2.0-2cross1) ... Setting up gpg-agent (2.4.9-7+b1) ... Setting up po-debconf (1.0.22) ... Setting up gpgsm (2.4.9-7+b1) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up dirmngr (2.4.9-7+b1) ... Setting up libgcc-16-dev-armhf-cross (16.2.0-2cross1) ... Setting up gnupg (2.4.9-7) ... Setting up gcc-16-arm-linux-gnueabihf (16.2.0-2cross1) ... Setting up debhelper (14.3) ... Setting up libstdc++-16-dev-armhf-cross (16.2.0-2cross1) ... Setting up gcc-arm-linux-gnueabihf (4:16.1.0-3) ... Setting up g++-16-arm-linux-gnueabihf (16.2.0-2cross1) ... Setting up g++-arm-linux-gnueabihf (4:16.1.0-3) ... Setting up crossbuild-essential-armhf (12.12) ... Setting up libgcc-s1:armhf (16.2.0-2) ... Setting up libc6:armhf (2.43-5) ... Setting up libasan8:armhf (16.2.0-2) ... Setting up libc6-dev:armhf (2.43-5) ... Setting up libstdc++6:armhf (16.2.0-2) ... Setting up libgpg-error0:armhf (1.61-5) ... Setting up zlib1g:armhf (1:1.3.dfsg+really1.3.2-3) ... Setting up libgomp1:armhf (16.2.0-2) ... Setting up libnettle8t64:armhf (3.10.2-1+b1) ... Setting up libgpg-error-dev:armhf (1.61-5) ... Setting up libgmp10:armhf (2:6.3.0+dfsg-5+b2) ... Setting up libatomic1:armhf (16.2.0-2) ... Setting up libubsan1:armhf (16.2.0-2) ... Setting up zlib1g-dev:armhf (1:1.3.dfsg+really1.3.2-3) ... Setting up libhogweed6t64:armhf (3.10.2-1+b1) ... Setting up libassuan9:armhf (3.0.2-2+b2) ... Setting up libboost-atomic1.90.0:armhf (1.90.0-6.1+b1) ... Setting up libgpgme45:armhf (2.2.0-2) ... Setting up libgcc-16-dev:armhf (16.2.0-2) ... Setting up libgmpxx4ldbl:armhf (2:6.3.0+dfsg-5+b2) ... Setting up libstdc++-16-dev:armhf (16.2.0-2) ... Setting up libassuan-dev:armhf (3.0.2-2+b2) ... Setting up libgpgme-dev:armhf (2.2.0-2) ... Setting up libboost1.90-dev:armhf (1.90.0-6.1+b1) ... Setting up libboost-atomic1.90-dev:armhf (1.90.0-6.1+b1) ... Setting up libgmp-dev:armhf (2:6.3.0+dfsg-5+b2) ... Setting up nettle-dev:armhf (3.10.2-1+b1) ... Setting up libboost-atomic-dev:armhf (1.90.0.2+nmu1) ... Setting up libsecrecy-dev:armhf (0.0.5+ds-5) ... Setting up sbuild-build-depends-main-dummy:armhf (0.invalid.0) ... Processing triggers for libc-bin (2.43-5) ... +------------------------------------------------------------------------------+ | Check architectures Thu, 10 Sep 2026 10:35:20 +0000 | +------------------------------------------------------------------------------+ Arch check ok (armhf included in any) +------------------------------------------------------------------------------+ | Build environment Thu, 10 Sep 2026 10:35:20 +0000 | +------------------------------------------------------------------------------+ Kernel: Linux 6.12.107+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.107-1 (2026-08-29) amd64 (x86_64) Toolchain package versions: binutils_2.47-4 dpkg-dev_1.23.11 g++-16_16.2.0-2 gcc-16_16.2.0-2 libc6-dev_2.43-5 libstdc++-16-dev_16.2.0-2 libstdc++-16-dev-armhf-cross_16.2.0-2cross1 libstdc++6_16.2.0-2 libstdc++6-armhf-cross_16.2.0-2cross1 linux-libc-dev_7.1.13-1 Package versions: apt_3.3.3 apt-utils_3.3.3 autoconf_2.73-2 automake_1:1.18.1-4 autopoint_1.0-4 autotools-dev_20240727.1+nmu1 base-files_14.2 base-passwd_3.6.8 bash_5.3-4 binutils_2.47-4 binutils-arm-linux-gnueabihf_2.47-4 binutils-common_2.47-4 binutils-x86-64-linux-gnu_2.47-4 bsdextrautils_2.42.3-1 build-essential_12.12 bzip2_1.0.8-6+b2 coreutils_9.10-1 cpp_4:16.1.0-3 cpp-16_16.2.0-2 cpp-16-arm-linux-gnueabihf_16.2.0-2cross1 cpp-16-x86-64-linux-gnu_16.2.0-2 cpp-arm-linux-gnueabihf_4:16.1.0-3 cpp-x86-64-linux-gnu_4:16.1.0-3 crossbuild-essential-armhf_12.12 d-shlibs_0.110 dash_0.5.12-12 debconf_1.5.92 debhelper_14.3 debian-archive-keyring_2025.1 debianutils_5.24 dh-autoreconf_23 dh-strip-nondeterminism_1.15.1-1 diffutils_1:3.12-1 dirmngr_2.4.9-7+b1 dpkg_1.23.11 dpkg-dev_1.23.11 dwz_0.17-1 file_1:5.47-4 findutils_4.11.0-2 g++_4:16.1.0-3 g++-16_16.2.0-2 g++-16-arm-linux-gnueabihf_16.2.0-2cross1 g++-16-x86-64-linux-gnu_16.2.0-2 g++-arm-linux-gnueabihf_4:16.1.0-3 g++-x86-64-linux-gnu_4:16.1.0-3 gcc_4:16.1.0-3 gcc-16_16.2.0-2 gcc-16-arm-linux-gnueabihf_16.2.0-2cross1 gcc-16-arm-linux-gnueabihf-base_16.2.0-2cross1 gcc-16-base_16.2.0-2 gcc-16-cross-base_16.2.0-2cross1 gcc-16-x86-64-linux-gnu_16.2.0-2 gcc-arm-linux-gnueabihf_4:16.1.0-3 gcc-x86-64-linux-gnu_4:16.1.0-3 gettext_1.0-4 gettext-base_1.0-4 gnupg_2.4.9-7 gnupg-l10n_2.4.9-7 gpg_2.4.9-7+b1 gpg-agent_2.4.9-7+b1 gpgconf_2.4.9-7+b1 gpgsm_2.4.9-7+b1 grep_3.12-1 groff-base_1.24.1-1 gzip_1.14-1 hostname_3.25 init-system-helpers_1.69+nmu1 intltool-debian_0.35.0+20060710.6 libacl1_2.4.0-1 libapt-pkg7.0_3.3.3 libarchive-zip-perl_1.68-1 libasan8_16.2.0-2 libasan8-armhf-cross_16.2.0-2cross1 libassuan-dev_3.0.2-2+b2 libassuan9_3.0.2-2+b2 libatomic1_16.2.0-2 libatomic1-armhf-cross_16.2.0-2cross1 libattr1_1:2.6.0-1 libaudit-common_1:4.1.2-1 libaudit1_1:4.1.2-1+b2 libbinutils_2.47-4 libblkid1_2.42.3-1 libboost-atomic-dev_1.90.0.2+nmu1 libboost-atomic1.90-dev_1.90.0-6.1+b1 libboost-atomic1.90.0_1.90.0-6.1+b1 libboost1.90-dev_1.90.0-6.1+b1 libbz2-1.0_1.0.8-6+b2 libc-bin_2.43-5 libc-dev-bin_2.43-5 libc-gconv-modules-extra_2.43-5 libc6_2.43-5 libc6-armhf-cross_2.43-3cross8 libc6-dev_2.43-5 libc6-dev-armhf-cross_2.43-3cross8 libcap-ng0_0.9.5-2 libcc1-0_16.2.0-2 libcrypt1_1:4.5.2+20251210-1 libctf-nobfd0_2.47-4 libctf0_2.47-4 libdb5.3t64_5.3.28+dfsg2-11+b1 libdebconfclient0_0.283 libdebhelper-perl_14.3 libdpkg-perl_1.23.11 libelf1t64_0.196-1 libffi8_3.8.0-2 libfile-stripnondeterminism-perl_1.15.1-1 libgcc-16-dev_16.2.0-2 libgcc-16-dev-armhf-cross_16.2.0-2cross1 libgcc-s1_16.2.0-2 libgcc-s1-armhf-cross_16.2.0-2cross1 libgcrypt20_1.12.3-2 libgdbm-compat4t64_1.26-1+b2 libgdbm6t64_1.26-1+b2 libgmp-dev_2:6.3.0+dfsg-5+b2 libgmp10_2:6.3.0+dfsg-5+b2 libgmpxx4ldbl_2:6.3.0+dfsg-5+b2 libgnutls30t64_3.8.13-1 libgomp1_16.2.0-2 libgomp1-armhf-cross_16.2.0-2cross1 libgpg-error-dev_1.61-5 libgpg-error0_1.61-5 libgpgme-dev_2.2.0-2 libgpgme45_2.2.0-2 libgprofng0_2.47-4 libhogweed6t64_3.10.2-1+b1 libhwasan0_16.2.0-2 libidn2-0_2.3.8-5 libisl23_0.28-1 libitm1_16.2.0-2 libjansson4_2.15.1-1 libksba8_1.8.1-1 libldap2_2.6.14+dfsg-2 liblsan0_16.2.0-2 liblz4-1_1.10.0-10 liblzma5_5.8.3-1 libmagic-mgc_1:5.47-4 libmagic1t64_1:5.47-4 libmd0_1.2.0-2 libmount1_2.42.3-1 libmpc3_1.3.1-3 libmpfr6_4.2.2-3 libncursesw6_6.6+20260608-2 libnettle8t64_3.10.2-1+b1 libnpth0t64_1.8-3+b2 libp11-kit0_0.26.5-1 libpam-modules_1.7.0-8 libpam-modules-bin_1.7.0-8 libpam-runtime_1.7.0-8 libpam0g_1.7.0-8 libpcre2-8-0_10.48-2 libperl5.42_5.42.3-1 libpipeline1_1.5.8-3 libpkgconf7_2.5.1-4 libquadmath0_16.2.0-2 libreadline8t64_8.3-4 libsasl2-2_2.1.28+dfsg1-11 libsasl2-modules-db_2.1.28+dfsg1-11 libseccomp2_2.6.1-1+b1 libsecrecy-dev_0.0.5+ds-5 libselinux1_3.11-2 libsframe3_2.47-4 libsmartcols1_2.42.3-1 libsqlite3-0_3.53.4-2 libssl3t64_3.6.4-1 libstdc++-16-dev_16.2.0-2 libstdc++-16-dev-armhf-cross_16.2.0-2cross1 libstdc++6_16.2.0-2 libstdc++6-armhf-cross_16.2.0-2cross1 libsystemd0_262~rc2-1 libtasn1-6_4.21.0-2+b1 libtinfo6_6.6+20260608-2 libtool_2.6.2-2 libtsan2_16.2.0-2 libubsan1_16.2.0-2 libubsan1-armhf-cross_16.2.0-2cross1 libuchardet0_0.0.8-2+b2 libudev1_262~rc2-1 libunistring5_1.4.2-1 libuuid1_2.42.3-1 libxml2-16_2.15.4+dfsg-1 libxxhash0_0.8.3-2+b2 libzstd1_1.5.7+dfsg-4 linux-libc-dev_7.1.13-1 linux-libc-dev-armhf-cross_7.1.13-1 login_1:4.16.0-2+really2.42.3-1 login.defs_1:4.19.3-2 m4_1.4.21-1 make_4.4.1-3 man-db_2.13.1-1 mawk_1.3.4.20260302-1 ncurses-base_6.6+20260608-2 ncurses-bin_6.6+20260608-2 nettle-dev_3.10.2-1+b1 openssl-provider-legacy_3.6.4-1 patch_2.8-2 perl_5.42.3-1 perl-base_5.42.3-1 perl-modules-5.42_5.42.3-1 pinentry-curses_1.3.3-3 pkgconf_2.5.1-4 pkgconf-bin_2.5.1-4 po-debconf_1.0.22 readline-common_8.3-4 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-3 sensible-utils_0.0.26 sqv_1.5.0-1 sysvinit-utils_3.18-1 tar_1.35+dfsg-5 util-linux_2.42.3-1 xz-utils_5.8.3-1 zlib1g_1:1.3.dfsg+really1.3.2-3 zlib1g-dev_1:1.3.dfsg+really1.3.2-3 +------------------------------------------------------------------------------+ | Build Thu, 10 Sep 2026 10:35:20 +0000 | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: libmaus2 Binary: libmaus2-2, libmaus2-dev Architecture: any Version: 2.0.813+ds-6 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , Steffen Moeller , Étienne Mollier Homepage: https://gitlab.com/german.tischler/libmaus2 Standards-Version: 4.7.4 Vcs-Browser: https://salsa.debian.org/med-team/libmaus2 Vcs-Git: https://salsa.debian.org/med-team/libmaus2.git Build-Depends: debhelper-compat (= 14), d-shlibs, libboost-atomic-dev, libsecrecy-dev, pkgconf, zlib1g-dev Package-List: libmaus2-2 deb libs optional arch=any libmaus2-dev deb libdevel optional arch=any Checksums-Sha1: 4ad42d0c76fc0e3cc06d9067049dd5acfd986984 1655972 libmaus2_2.0.813+ds.orig.tar.xz bdbdb6aff13e41a83105800ad3d3d126a98015a0 10260 libmaus2_2.0.813+ds-6.debian.tar.xz Checksums-Sha256: 8ad66707ad0881638e67f51ba5b2182fd0ad194601025f319c87af77d933b7c9 1655972 libmaus2_2.0.813+ds.orig.tar.xz fe6a03965722fb86ebf12b39b888a17e22bd47400644273833f56d0e1a0fad70 10260 libmaus2_2.0.813+ds-6.debian.tar.xz Files: fd8774f8aa644f77bfdca25fe33348e1 1655972 libmaus2_2.0.813+ds.orig.tar.xz 8bc079315adcddd3ad6c0ca13292ad29 10260 libmaus2_2.0.813+ds-6.debian.tar.xz Dgit: c1fe707985fbeeae20dc119c0f10d5859b640823 debian archive/debian/2.0.813+ds-6 https://git.dgit.debian.org/libmaus2 -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmpzoqQUHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdrPuQ//TrZ/sTYoK9aDwdN1iazLehlrKDOt 3PZ8a7CtM3Nt4rHp3//pOwo8jicrf14pjFivOgltZpQXCdSjNVu8KaxS84qT0Qko dNC0kPrQ7+ddHtg5/v7l4l/Ea9fHkUl4FOmIKHk+fGmvvbR/iUxrpq36iUY3ePiv wNKQKjf/KIKzv87QCFJUHXHn3BBQb+oTZybb3m1vIk2d3it55Np9fQbB78BvTS0f SrA83vqIoIN3cNzYwadzsf3mqba1hI5e5wcNYZt5ifFHED/7LF/japPovykHNEpe XVXxlkI5UtMH/5xDgFSwcrxLfLo28qA26gbe/RBdTYzDU/QEPDJuIhBwfIeQQ+R9 wd1Pc0aAcF9yb/osPmwAGsjYIQrojzNxQyQqpPHKN/K0c9HiaJzj0txJJxjnfMXZ kcZijga3NrTppO8aCxLtX+mGa+c2jHA0T7Il9igU6tcrBem3Rmd93kFc5NF8ew0i L+MzXWvMfHR63ynQ9StnZAL2GeEfXxtiQC8kbOzvJICWputNjXZ1HDi/sxPOrfiO l9QruR88311210dBa4ZoWfJrigB80iVOFJfy2B8r7/YS02pQYMSTLJKPih/RmyT9 CFcxg49B2pJ2QYSHVa8TeU+v0S6CVgcfEaObkqGj9lLjf2qJ7LeCLrVkHRbCYNWv DWBCoHhFmXM8jbQ= =66m6 -----END PGP SIGNATURE----- dpkg-source: warning: cannot verify inline signature for ./libmaus2_2.0.813+ds-6.dsc: missing OpenPGP keyrings dpkg-source: info: verifying ./libmaus2_2.0.813+ds-6.dsc dpkg-source: info: skipping absent keyring /usr/share/keyrings/debian-keyring.pgp dpkg-source: info: skipping absent keyring /usr/share/keyrings/debian-tag2upload.pgp dpkg-source: info: skipping absent keyring /usr/share/keyrings/debian-nonupload.pgp dpkg-source: info: skipping absent keyring /usr/share/keyrings/debian-maintainers.pgp dpkg-source: info: extracting libmaus2 in /build/reproducible-path/libmaus2-2.0.813+ds dpkg-source: info: unpacking libmaus2_2.0.813+ds.orig.tar.xz dpkg-source: info: unpacking libmaus2_2.0.813+ds-6.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying add-support-for-loong64.patch dpkg-source: info: applying gcc-15.patch dpkg-source: info: applying unlock-stdc++.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.armhf DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LOGNAME=sbuild OLDPWD=/home/crossqa PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SBUILD_CONFIG=/tmp/tmp.3muX6z2lPT/sbuild.conf SHELL=/bin/sh USER=sbuild XDG_SESSION_CLASS=user dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -aarmhf -Pcross,nocheck -us -uc -B --jobs-try=1 dpkg-buildpackage: info: source package libmaus2 dpkg-buildpackage: info: source version 2.0.813+ds-6 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-architecture: warning: specified GNU system type arm-linux-gnueabihf does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean dh clean dh_clean debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a autoreconf: export WARNINGS= autoreconf: Entering directory '.' autoreconf: configure.ac: no obvious need to run autopoint autoreconf: running: aclocal --force -I m4 autoreconf: configure.ac: tracing autoreconf: running: libtoolize --copy --force libtoolize: putting auxiliary files in '.'. libtoolize: copying file './ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'. libtoolize: copying file 'm4/libtool.m4' libtoolize: copying file 'm4/ltoptions.m4' libtoolize: copying file 'm4/ltsugar.m4' libtoolize: copying file 'm4/ltversion.m4' libtoolize: copying file 'm4/lt~obsolete.m4' autoreconf: configure.ac: not using Intltool autoreconf: configure.ac: not using Gtkdoc autoreconf: configure.ac: no need to run autopoint (confirmed) autoreconf: running: aclocal --force -I m4 autoreconf: running: /usr/bin/autoconf --force configure.ac:4: warning: The macro 'AC_CANONICAL_SYSTEM' is obsolete. configure.ac:4: You should run autoupdate. ./lib/autoconf/general.m4:2137: AC_CANONICAL_SYSTEM is expanded from... configure.ac:4: the top level configure.ac:6: warning: The macro 'AC_PROG_LIBTOOL' is obsolete. configure.ac:6: You should run autoupdate. m4/libtool.m4:100: AC_PROG_LIBTOOL is expanded from... configure.ac:6: the top level configure.ac:9: warning: 'AM_CONFIG_HEADER': this macro is obsolete. configure.ac:9: You should use the 'AC_CONFIG_HEADERS' macro instead. aclocal.m4:1059: AM_CONFIG_HEADER is expanded from... configure.ac:9: the top level configure.ac:77: warning: The macro 'AC_TRY_LINK' is obsolete. configure.ac:77: You should run autoupdate. ./lib/autoconf/general.m4:2976: AC_TRY_LINK is expanded from... configure.ac:77: the top level configure.ac:153: warning: The macro 'AC_TRY_LINK' is obsolete. configure.ac:153: You should run autoupdate. ./lib/autoconf/general.m4:2976: AC_TRY_LINK is expanded from... configure.ac:153: the top level configure.ac:211: warning: The macro 'AC_TRY_LINK' is obsolete. configure.ac:211: You should run autoupdate. ./lib/autoconf/general.m4:2976: AC_TRY_LINK is expanded from... configure.ac:211: the top level configure.ac:247: warning: The macro 'AC_TRY_LINK' is obsolete. configure.ac:247: You should run autoupdate. ./lib/autoconf/general.m4:2976: AC_TRY_LINK is expanded from... configure.ac:247: the top level configure.ac:276: warning: The macro 'AC_TRY_LINK' is obsolete. configure.ac:276: You should run autoupdate. ./lib/autoconf/general.m4:2976: AC_TRY_LINK is expanded from... configure.ac:276: the top level configure.ac:331: warning: The macro 'AC_TRY_LINK' is obsolete. configure.ac:331: You should run autoupdate. ./lib/autoconf/general.m4:2976: AC_TRY_LINK is expanded from... configure.ac:331: the top level configure.ac:386: warning: The macro 'AC_TRY_LINK' is obsolete. configure.ac:386: You should run autoupdate. ./lib/autoconf/general.m4:2976: AC_TRY_LINK is expanded from... configure.ac:386: the top level configure.ac:565: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:565: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:565: the top level configure.ac:577: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:577: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:577: the top level configure.ac:589: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:589: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:589: the top level configure.ac:601: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:601: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:601: the top level configure.ac:613: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:613: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:613: the top level configure.ac:627: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:627: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:627: the top level configure.ac:641: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:641: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:641: the top level configure.ac:655: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:655: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:655: the top level configure.ac:669: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:669: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:669: the top level configure.ac:683: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:683: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:683: the top level configure.ac:696: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:696: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:696: the top level configure.ac:713: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:713: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:713: the top level configure.ac:727: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:727: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:727: the top level configure.ac:743: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:743: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:743: the top level configure.ac:759: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:759: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:759: the top level configure.ac:773: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:773: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:773: the top level configure.ac:786: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:786: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:786: the top level configure.ac:800: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:800: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:800: the top level configure.ac:813: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:813: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:813: the top level configure.ac:829: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:829: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:829: the top level configure.ac:842: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:842: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:842: the top level configure.ac:856: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:856: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:856: the top level configure.ac:870: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:870: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:870: the top level configure.ac:884: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:884: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:884: the top level configure.ac:900: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:900: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:900: the top level configure.ac:941: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:941: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:941: the top level configure.ac:958: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:958: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:958: the top level configure.ac:977: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:977: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:977: the top level configure.ac:992: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:992: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:992: the top level configure.ac:1009: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:1009: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:1009: the top level configure.ac:1027: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:1027: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:1027: the top level configure.ac:1045: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:1045: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:1045: the top level configure.ac:1062: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:1062: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:1062: the top level configure.ac:1079: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:1079: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:1079: the top level configure.ac:1096: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:1096: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:1096: the top level configure.ac:1113: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:1113: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:1113: the top level configure.ac:1146: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:1146: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:1146: the top level configure.ac:1163: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:1163: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:1163: the top level configure.ac:1180: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:1180: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:1180: the top level configure.ac:1213: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:1213: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:1213: the top level configure.ac:1231: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:1231: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:1231: the top level configure.ac:1249: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:1249: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:1249: the top level configure.ac:1269: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:1269: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:1269: the top level configure.ac:1289: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:1289: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:1289: the top level configure.ac:1309: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:1309: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:1309: the top level configure.ac:1329: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:1329: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:1329: the top level configure.ac:1349: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:1349: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:1349: the top level configure.ac:1369: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:1369: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:1369: the top level configure.ac:1389: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:1389: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:1389: the top level configure.ac:1426: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:1426: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:1426: the top level configure.ac:1446: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:1446: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:1446: the top level configure.ac:1466: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:1466: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:1466: the top level configure.ac:1486: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:1486: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:1486: the top level configure.ac:1525: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:1525: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:1525: the top level configure.ac:1545: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:1545: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:1545: the top level configure.ac:1566: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:1566: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:1566: the top level configure.ac:1586: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:1586: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:1586: the top level configure.ac:1601: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:1601: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:1601: the top level configure.ac:1677: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:1677: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:1677: the top level configure.ac:1686: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:1686: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:1686: the top level configure.ac:1702: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:1702: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:1702: the top level configure.ac:1718: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:1718: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:1718: the top level configure.ac:1731: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:1731: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:1731: the top level configure.ac:1746: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:1746: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:1746: the top level configure.ac:1760: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:1760: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:1760: the top level configure.ac:1774: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:1774: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:1774: the top level configure.ac:1787: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:1787: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:1787: the top level configure.ac:1806: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:1806: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:1806: the top level configure.ac:1887: warning: The macro 'AC_TRY_LINK' is obsolete. configure.ac:1887: You should run autoupdate. ./lib/autoconf/general.m4:2976: AC_TRY_LINK is expanded from... lib/m4sugar/m4sh.m4:689: _AS_IF_ELSE is expanded from... lib/m4sugar/m4sh.m4:696: AS_IF is expanded from... ./lib/autoconf/general.m4:2305: AC_CACHE_VAL is expanded from... ./lib/autoconf/general.m4:2326: AC_CACHE_CHECK is expanded from... m4/ax_openmp.m4:68: AX_OPENMP is expanded from... configure.ac:1887: the top level configure.ac:1897: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:1897: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:1897: the top level configure.ac:1913: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:1913: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:1913: the top level configure.ac:1933: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:1933: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:1933: the top level configure.ac:2315: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:2315: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:2315: the top level configure.ac:2354: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:2354: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:2354: the top level configure.ac:2711: warning: The macro 'AC_TRY_LINK' is obsolete. configure.ac:2711: You should run autoupdate. ./lib/autoconf/general.m4:2976: AC_TRY_LINK is expanded from... configure.ac:2711: the top level configure.ac:2779: warning: The macro 'AC_TRY_LINK' is obsolete. configure.ac:2779: You should run autoupdate. ./lib/autoconf/general.m4:2976: AC_TRY_LINK is expanded from... configure.ac:2779: the top level configure.ac:2808: warning: The macro 'AC_TRY_LINK' is obsolete. configure.ac:2808: You should run autoupdate. ./lib/autoconf/general.m4:2976: AC_TRY_LINK is expanded from... configure.ac:2808: the top level configure.ac:2824: warning: The macro 'AC_TRY_LINK' is obsolete. configure.ac:2824: You should run autoupdate. ./lib/autoconf/general.m4:2976: AC_TRY_LINK is expanded from... configure.ac:2824: the top level configure.ac:2990: warning: The macro 'AC_TRY_LINK' is obsolete. configure.ac:2990: You should run autoupdate. ./lib/autoconf/general.m4:2976: AC_TRY_LINK is expanded from... configure.ac:2990: the top level configure.ac:3215: warning: AC_OUTPUT should be used without arguments. configure.ac:3215: You should run autoupdate. autoreconf: running: /usr/bin/autoheader --force autoreconf: running: automake --add-missing --copy --force-missing configure.ac:6: installing './compile' configure.ac:4: installing './config.guess' configure.ac:4: installing './config.sub' configure.ac:8: installing './install-sh' configure.ac:8: installing './missing' Makefile.am: installing './INSTALL' src/Makefile.am: installing './depcomp' parallel-tests: installing './test-driver' autoreconf: configure.ac: not running make: --make not given autoreconf: Leaving directory '.' dh_auto_configure -a ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/arm-linux-gnueabihf --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --host=arm-linux-gnueabihf configure: Configuring for source in directory . checking build system type... x86_64-pc-linux-gnu checking host system type... arm-unknown-linux-gnueabihf checking target system type... arm-unknown-linux-gnueabihf checking how to print strings... printf checking for arm-linux-gnueabihf-gcc... arm-linux-gnueabihf-gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... yes checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether arm-linux-gnueabihf-gcc accepts -g... yes checking for arm-linux-gnueabihf-gcc option to enable C23 features... none needed checking whether arm-linux-gnueabihf-gcc understands -c and -o together... yes checking for a sed that does not truncate output... /usr/bin/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking for ld used by arm-linux-gnueabihf-gcc... /usr/arm-linux-gnueabihf/bin/ld checking if the linker (/usr/arm-linux-gnueabihf/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/arm-linux-gnueabihf-nm -B checking the name lister (/usr/bin/arm-linux-gnueabihf-nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-pc-linux-gnu file names to arm-unknown-linux-gnueabihf format... func_convert_file_noop checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/arm-linux-gnueabihf/bin/ld option to reload object files... -r checking for file... file checking for arm-linux-gnueabihf-objdump... arm-linux-gnueabihf-objdump checking how to recognize dependent libraries... pass_all checking for arm-linux-gnueabihf-dlltool... no checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for arm-linux-gnueabihf-ranlib... arm-linux-gnueabihf-ranlib checking for arm-linux-gnueabihf-ar... arm-linux-gnueabihf-ar checking for archiver @FILE support... @ checking for arm-linux-gnueabihf-strip... arm-linux-gnueabihf-strip checking for gawk... no checking for mawk... mawk checking command to parse /usr/bin/arm-linux-gnueabihf-nm -B output from arm-linux-gnueabihf-gcc object... ok checking for sysroot... no checking for a working dd... /usr/bin/dd checking how to truncate binary pipes... /usr/bin/dd bs=4096 count=1 checking for arm-linux-gnueabihf-mt... no checking for mt... no checking if : is a manifest tool... no checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking which variant of shared library versioning to provide... (default) aix checking for objdir... .libs checking if arm-linux-gnueabihf-gcc supports -fno-rtti -fno-exceptions... no checking for arm-linux-gnueabihf-gcc option to produce PIC... -fPIC -DPIC checking if arm-linux-gnueabihf-gcc PIC flag -fPIC -DPIC works... yes checking if arm-linux-gnueabihf-gcc static flag -static works... yes checking if arm-linux-gnueabihf-gcc supports -c -o file.o... yes checking if arm-linux-gnueabihf-gcc supports -c -o file.o... (cached) yes checking whether the arm-linux-gnueabihf-gcc linker (/usr/arm-linux-gnueabihf/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for a BSD-compatible install... /usr/bin/install -c checking whether sleep supports fractional seconds... yes checking filesystem timestamp resolution... 0.01 checking whether build environment is sane... yes checking for arm-linux-gnueabihf-strip... (cached) arm-linux-gnueabihf-strip checking for a race-free mkdir -p... /usr/bin/mkdir -p checking whether make sets $(MAKE)... yes checking whether make supports the include directive... yes (GNU style) checking whether make supports nested variables... yes checking xargs -n works... yes checking how to create a pax tar archive... gnutar checking dependency style of arm-linux-gnueabihf-gcc... none checking whether we are cross compiling... yes checking for bash... /usr/bin/bash checking for base64... /usr/bin/base64 checking for arm-linux-gnueabihf-gcc... (cached) arm-linux-gnueabihf-gcc checking whether the compiler supports GNU C... (cached) yes checking whether arm-linux-gnueabihf-gcc accepts -g... (cached) yes checking for arm-linux-gnueabihf-gcc option to enable C23 features... (cached) none needed checking whether arm-linux-gnueabihf-gcc understands -c and -o together... (cached) yes checking whether the compiler supports GNU C++... yes checking whether arm-linux-gnueabihf-g++ accepts -g... yes checking how to run the C++ preprocessor... arm-linux-gnueabihf-g++ -E checking for ld used by arm-linux-gnueabihf-g++... /usr/arm-linux-gnueabihf/bin/ld checking if the linker (/usr/arm-linux-gnueabihf/bin/ld) is GNU ld... yes checking whether the arm-linux-gnueabihf-g++ linker (/usr/arm-linux-gnueabihf/bin/ld) supports shared libraries... yes checking for arm-linux-gnueabihf-g++ option to produce PIC... -fPIC -DPIC checking if arm-linux-gnueabihf-g++ PIC flag -fPIC -DPIC works... yes checking if arm-linux-gnueabihf-g++ static flag -static works... yes checking if arm-linux-gnueabihf-g++ supports -c -o file.o... yes checking if arm-linux-gnueabihf-g++ supports -c -o file.o... (cached) yes checking whether the arm-linux-gnueabihf-g++ linker (/usr/arm-linux-gnueabihf/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking dependency style of arm-linux-gnueabihf-g++... none checking whether host cpu is x86_64... no checking whether host os is GNU/Linux... no checking whether we are compiling for x86_64 CPU on GNU/Linux OS ... no checking size of unsigned long... 4 checking for winsock2.h... no checking for ws2tcpip.h... no checking for sys/wait.h... yes checking for sys/ioctl.h... yes checking for execinfo.h... yes checking for windows.h... no checking for unistd.h... (cached) yes checking for linux/sysctl.h... yes checking for features.h... yes checking for dlfcn.h... (cached) yes checking for sys/prctl.h... yes checking for libunwind.h... no checking for unw_backtrace in -lunwind... no checking for arm-linux-gnueabihf-pkg-config... /usr/bin/arm-linux-gnueabihf-pkg-config checking pkg-config is at least version 0.9.0... yes checking for zlib >= 0... yes checking for libcurl >= 7.47.0... no checking for parasail-1 >= 2.4.3... no checking for zlib >= 0... yes checking whether we can compile a zlib program... yes checking for snappy.h... no checking for libdeflate.h... no checking for GetProcessMemoryInfo... no checking for dlopen... yes checking for dlerror... yes checking for dlsym... yes checking for dlclose... yes checking for dlopen in -ldl... yes checking for dlerror in -ldl... yes checking for dlsym in -ldl... yes checking for dlclose in -ldl... yes checking whether we found the dlopen function anywhere... yes checking whether we found the dlerror function anywhere... yes checking whether we found the dlsym function anywhere... yes checking whether we found the dlclose function anywhere... yes checking whether we found all the functions required for dynamic modules somewhere... yes checking whether we need the dl library for any of the dl functions... no checking for backtrace... yes checking for gethostname... yes checking for fsync... yes checking for dup2... yes checking for execv... yes checking for mkstemp... yes checking for fcntl... yes checking for pipe... yes checking for fork... yes checking for symlink... yes checking for waitpid... yes checking for gethostbyname... yes checking for gethostbyname2... yes checking for prctl... yes checking whether SIGPIPE exists... yes checking whether SIGHUP exists... yes checking whether pid_t exists... yes checking whether getpid exists... yes checking whether O_RDONLY... yes checking whether O_WRONLY... yes checking whether O_RDWR... yes checking whether O_CREAT... yes checking whether O_TRUNC... yes checking whether OFF_T... yes checking whether lseek function exists... yes checking whether read function exists... yes checking whether fstat function exists... yes checking whether stat function exists... yes checking whether fstatfs function exists... yes checking whether sysconf function exists... yes checking whether write function exists... yes checking whether WIFEXITED exists... yes checking whether WEXITSTATUS exists... yes checking whether the C++ compiler supports the -msse4 flag... no checking whether the C++ compiler supports the -msse2 flag... no checking whether the C++ compiler supports the -mssse3 flag... no checking whether the C++ compiler supports the -msse4.1 flag... no checking whether the C++ compiler supports the -mavx flag... no checking whether the C++ compiler supports the -mavx2 flag... no checking for smmintrin.h... no checking for immintrin.h... no checking whether the C++ compiler supports all intrinsics required for SIMD global alignment (X128/8 variant)... no checking whether the C++ compiler supports all intrinsics required for SIMD global alignment (X128/16 variant)... no checking whether the C++ compiler supports all intrinsics required for SIMD global alignment (Y256/8 variant)... no checking whether the C++ compiler supports all intrinsics required for SIMD global alignment (Y256/16 variant)... no checking whether the C++ compiler supports all intrinsics required for one to many global alignment using AVX2... no checking whether the C++ compiler supports the -msse4 flag... no checking for open with 2 arguments... yes checking for open with 3 arguments... yes checking for close... yes checking for O_NONBLOCK... yes checking for O_LARGEFILE... yes checking for O_BINARY... no checking for ssize_t... yes checking for socklen_t... yes checking whether the C++ compiler supports the -W flag... yes checking whether the C++ compiler supports the -Wall flag... yes checking whether the C++ compiler supports the -Wnon-virtual-dtor flag... yes checking for OpenMP flag of C++ compiler... -fopenmp checking whether the C++ compiler supports the -rdynamic flag... yes checking whether std::unique_ptr exists... yes checking whether std::shared_ptr exists... yes checking whether std::unordered_map exists... yes checking whether std::unordered_set exists... yes checking whether std::move exists... yes checking whether std::filesystem exists... yes checking whether byte ordering is bigendian... no checking for psapi.h... no checking for fcntl.h... yes checking for libgen.h... yes checking for sys/stat.h... (cached) yes checking for sys/types.h... (cached) yes checking for sys/vfs.h... yes checking for boost/smart_ptr/atomic_shared_ptr.hpp... yes checking whether std::atomic< std::shared_ptr<> > is supported... yes checking whether boost::atomic_shared_ptr< > is supported... yes configure: Using atomic from std libray checking whether we can compile a program using statfs... yes checking whether struct statfs has field f_iosize... no checking whether struct statfs has field f_bsize... yes checking whether the C++ compiler supports the -pthread flag... yes checking whether getpagesize is present... yes checking for unsigned __int128... no checking whether we can compile a program using the gmp library... yes checking for libsecrecy >= 0.0.0... yes checking whether we can compile a libsecrecy program... yes checking for arm-linux-gnueabihf-gcc option to support large files... none needed checking for declarations of fseeko and ftello... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating libmaus2.pc config.status: creating ubuntu.sh config.status: creating src/libmaus2/LibMausConfig.hpp config.status: creating test/Makefile config.status: creating config.h config.status: executing libtool commands config.status: executing depfiles commands dh_auto_build -a make -j1 make[1]: Entering directory '/build/reproducible-path/libmaus2-2.0.813+ds' make all-recursive make[2]: Entering directory '/build/reproducible-path/libmaus2-2.0.813+ds' Making all in src make[3]: Entering directory '/build/reproducible-path/libmaus2-2.0.813+ds/src' arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testThreadPool-testThreadPool.o `test -f 'test/testThreadPool.cpp' || echo './'`test/testThreadPool.cpp /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/la-StaticInitialization.lo `test -f 'libmaus2/StaticInitialization.cpp' || echo './'`libmaus2/StaticInitialization.cpp libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/StaticInitialization.cpp -fPIC -DPIC -o libmaus2/.libs/la-StaticInitialization.o In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/util/IntervalTree.hpp:25, from ./libmaus2/aio/FileFragment.hpp:27, from ./libmaus2/sorting/PairFileSorting.hpp:27, from libmaus2/StaticInitialization.cpp:499: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/bambam/CigarStringParser.hpp:25, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from ./libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from libmaus2/StaticInitialization.cpp:560: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ In file included from ./libmaus2/bambam/BamAlignmentDecoder.hpp:24: ./libmaus2/bambam/BamHeaderLowMem.hpp: In member function ‘void libmaus2::bambam::BamHeaderLowMem::setupFromText()’: ./libmaus2/bambam/BamHeaderLowMem.hpp:366:58: warning: variable ‘ln’ set but not used [-Wunused-but-set-variable=] 366 | uint64_t ln = 0; | ^~ libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/StaticInitialization.cpp -o libmaus2/la-StaticInitialization.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/bitio/la-CompactArray.lo `test -f 'libmaus2/bitio/CompactArray.cpp' || echo './'`libmaus2/bitio/CompactArray.cpp libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bitio/CompactArray.cpp -fPIC -DPIC -o libmaus2/bitio/.libs/la-CompactArray.o libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 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-fPIC -DPIC -o libmaus2/suffixsort/.libs/la-divsufsort.o libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/divsufsort.cpp -o libmaus2/suffixsort/la-divsufsort.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE 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arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/math/la-primes16.lo `test -f 'libmaus2/math/primes16.cpp' || echo './'`libmaus2/math/primes16.cpp libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/math/primes16.cpp -fPIC -DPIC -o libmaus2/math/.libs/la-primes16.o libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/math/primes16.cpp -o libmaus2/math/la-primes16.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/util/la-OutputFileNameTools.lo `test -f 'libmaus2/util/OutputFileNameTools.cpp' || echo './'`libmaus2/util/OutputFileNameTools.cpp libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/util/OutputFileNameTools.cpp -fPIC -DPIC -o libmaus2/util/.libs/la-OutputFileNameTools.o libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/util/OutputFileNameTools.cpp -o libmaus2/util/la-OutputFileNameTools.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/select/la-ESelectBase.lo `test -f 'libmaus2/select/ESelectBase.cpp' || echo './'`libmaus2/select/ESelectBase.cpp libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/select/ESelectBase.cpp -fPIC -DPIC -o libmaus2/select/.libs/la-ESelectBase.o libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/select/ESelectBase.cpp -o libmaus2/select/la-ESelectBase.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/bambam/la-CigarStringParser.lo `test -f 'libmaus2/bambam/CigarStringParser.cpp' || echo './'`libmaus2/bambam/CigarStringParser.cpp libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/CigarStringParser.cpp -fPIC -DPIC -o libmaus2/bambam/.libs/la-CigarStringParser.o In file included from ./libmaus2/bambam/CigarStringParser.hpp:25, from libmaus2/bambam/CigarStringParser.cpp:20: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/CigarStringParser.cpp -o libmaus2/bambam/la-CigarStringParser.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/fastx/la-Phred.lo `test -f 'libmaus2/fastx/Phred.cpp' || echo './'`libmaus2/fastx/Phred.cpp libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/fastx/Phred.cpp -fPIC -DPIC -o libmaus2/fastx/.libs/la-Phred.o libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/fastx/Phred.cpp -o libmaus2/fastx/la-Phred.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/lz/la-SnappyCompress.lo `test -f 'libmaus2/lz/SnappyCompress.cpp' || echo './'`libmaus2/lz/SnappyCompress.cpp libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lz/SnappyCompress.cpp -fPIC -DPIC -o libmaus2/lz/.libs/la-SnappyCompress.o libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lz/SnappyCompress.cpp -o libmaus2/lz/la-SnappyCompress.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/bambam/la-ReadEndsContainer.lo `test -f 'libmaus2/bambam/ReadEndsContainer.cpp' || echo './'`libmaus2/bambam/ReadEndsContainer.cpp libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/ReadEndsContainer.cpp -fPIC -DPIC -o libmaus2/bambam/.libs/la-ReadEndsContainer.o In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/bambam/BamAuxFilterVector.hpp:22, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:27, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/ReadEndsContainer.hpp:23, from libmaus2/bambam/ReadEndsContainer.cpp:19: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/bambam/CigarStringParser.hpp:25, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ In file included from ./libmaus2/bambam/ReadEndsBlockDecoderBase.hpp:31, from ./libmaus2/bambam/ReadEndsContainer.hpp:34: ./libmaus2/index/ExternalMemoryIndexDecoder.hpp: In instantiation of ‘void libmaus2::index::ExternalMemoryIndexDecoder<_data_type, _base_level_log, _inner_level_log, _comparator>::setup(uint64_t) [with _data_type = libmaus2::bambam::ReadEndsBase; unsigned int _base_level_log = 9; unsigned int _inner_level_log = 2; _comparator = std::less; uint64_t = long long unsigned int]’: ./libmaus2/index/ExternalMemoryIndexDecoder.hpp:189:5: required from ‘libmaus2::index::ExternalMemoryIndexDecoder<_data_type, _base_level_log, _inner_level_log, _comparator>::ExternalMemoryIndexDecoder(std::istream&, uint64_t) [with _data_type = libmaus2::bambam::ReadEndsBase; unsigned int _base_level_log = 9; unsigned int _inner_level_log = 2; _comparator = std::less; std::istream = std::basic_istream; uint64_t = long long unsigned int]’ 189 | setup(rcache_thres); | ^~~~~ ./libmaus2/bambam/ReadEndsBlockDecoderBase.hpp:76:6: required from ‘libmaus2::index::ExternalMemoryIndexDecoder::unique_ptr_type libmaus2::bambam::ReadEndsBlockDecoderBase<_proxy>::openIndex() [with bool _proxy = true; libmaus2::index::ExternalMemoryIndexDecoder::unique_ptr_type = std::unique_ptr, std::default_delete > >]’ 76 | new libmaus2::index::ExternalMemoryIndexDecoder(index) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/bambam/ReadEndsBlockDecoderBase.hpp:140:15: required from ‘libmaus2::bambam::ReadEndsBlockDecoderBase<_proxy>::ReadEndsBlockDecoderBase(libmaus2::bambam::ReadEndsBlockDecoderBaseCollectionInfoDataStreamProvider&, libmaus2::bambam::ReadEndsBlockDecoderBaseCollectionInfoIndexStreamProvider&, std::istream&, std::istream&, uint64_t, uint64_t) [with bool _proxy = true; std::istream = std::basic_istream; uint64_t = long long unsigned int]’ 140 | Pindex(openIndex()), | ^~~~~~~~~ ./libmaus2/bambam/ReadEndsBlockDecoderBaseCollection.hpp:140:8: required from ‘libmaus2::bambam::ReadEndsBlockDecoderBaseCollection<_proxy>::ReadEndsBlockDecoderBaseCollection(const std::vector&, bool, uint64_t) [with bool _proxy = true; uint64_t = long long unsigned int]’ 140 | new libmaus2::bambam::ReadEndsBlockDecoderBase( | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 | subinfo, | ~~~~~~~~ 142 | subinfo, | ~~~~~~~~ 143 | *(subinfo.datastr), | ~~~~~~~~~~~~~~~~~~~ 144 | *(subinfo.indexstr), | ~~~~~~~~~~~~~~~~~~~~ 145 | subinfo.indexoffset.at(i), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 | subinfo.blockelcnt.at(i) | ~~~~~~~~~~~~~~~~~~~~~~~~ 147 | ) | ~ ./libmaus2/bambam/ReadEndsContainer.hpp:590:6: required from here 590 | ) | ^ ./libmaus2/index/ExternalMemoryIndexDecoder.hpp:99:46: warning: variable ‘numcache’ set but not used [-Wunused-but-set-variable=] 99 | unsigned int numcache = 0; | ^~~~~~~~ libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/ReadEndsContainer.cpp -o libmaus2/bambam/la-ReadEndsContainer.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/bambam/la-ReadEnds.lo `test -f 'libmaus2/bambam/ReadEnds.cpp' || echo './'`libmaus2/bambam/ReadEnds.cpp libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/ReadEnds.cpp -fPIC -DPIC -o libmaus2/bambam/.libs/la-ReadEnds.o In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/bambam/BamAuxFilterVector.hpp:22, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:27, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/ReadEndsBase.hpp:22, from ./libmaus2/bambam/ReadEnds.hpp:22, from libmaus2/bambam/ReadEnds.cpp:19: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/bambam/CigarStringParser.hpp:25, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/ReadEnds.cpp -o libmaus2/bambam/la-ReadEnds.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/huffman/la-IndexLoaderBase.lo `test -f 'libmaus2/huffman/IndexLoaderBase.cpp' || echo './'`libmaus2/huffman/IndexLoaderBase.cpp libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/huffman/IndexLoaderBase.cpp -fPIC -DPIC -o libmaus2/huffman/.libs/la-IndexLoaderBase.o libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/huffman/IndexLoaderBase.cpp -o libmaus2/huffman/la-IndexLoaderBase.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/bambam/la-BamAlignmentDecoderBase.lo `test -f 'libmaus2/bambam/BamAlignmentDecoderBase.cpp' || echo './'`libmaus2/bambam/BamAlignmentDecoderBase.cpp libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/BamAlignmentDecoderBase.cpp -fPIC -DPIC -o libmaus2/bambam/.libs/la-BamAlignmentDecoderBase.o In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/bambam/BamAuxFilterVector.hpp:22, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:27, from libmaus2/bambam/BamAlignmentDecoderBase.cpp:19: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/bambam/CigarStringParser.hpp:25, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/BamAlignmentDecoderBase.cpp -o libmaus2/bambam/la-BamAlignmentDecoderBase.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/bambam/la-StrCmpNum.lo `test -f 'libmaus2/bambam/StrCmpNum.cpp' || echo './'`libmaus2/bambam/StrCmpNum.cpp libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/StrCmpNum.cpp -fPIC -DPIC -o libmaus2/bambam/.libs/la-StrCmpNum.o libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/StrCmpNum.cpp -o libmaus2/bambam/la-StrCmpNum.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/huffman/la-KvInitResult.lo `test -f 'libmaus2/huffman/KvInitResult.cpp' || echo './'`libmaus2/huffman/KvInitResult.cpp libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/huffman/KvInitResult.cpp -fPIC -DPIC -o libmaus2/huffman/.libs/la-KvInitResult.o libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/huffman/KvInitResult.cpp -o libmaus2/huffman/la-KvInitResult.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/fm/la-MausFmToBwaConversion.lo `test -f 'libmaus2/fm/MausFmToBwaConversion.cpp' || echo './'`libmaus2/fm/MausFmToBwaConversion.cpp libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/fm/MausFmToBwaConversion.cpp -fPIC -DPIC -o libmaus2/fm/.libs/la-MausFmToBwaConversion.o In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/util/IntervalTree.hpp:25, from ./libmaus2/gamma/GammaRLDecoder.hpp:28, from libmaus2/fm/MausFmToBwaConversion.cpp:24: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/huffman/huffman.hpp:183, from ./libmaus2/huffman/CanonicalEncoder.hpp:26, from ./libmaus2/gamma/GammaRLDecoder.hpp:26: ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 2]’: ./libmaus2/huffman/HuffmanSorting.hpp:860:55: required from here 860 | huffman::EncodeTable enctable ( root ); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:188: ./libmaus2/huffman/HuffmanSorting.hpp: In instantiation of ‘static void libmaus2::huffman::HuffmanSorting::uncompressHuffmanCoded(uint64_t*, uint64_t, uint64_t, uint64_t, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::HuffmanTreeNode*, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::EncodeTable&) [with unsigned int lookupwords = 2; uint64_t = long long unsigned int]’: ./libmaus2/huffman/HuffmanSorting.hpp:1091:27: required from here 1091 | uncompressHuffmanCoded(acode.get(), 0 /* bit offset */, lowhalf /* syms */, firsthighsym, enctable,dectable,root.get(),dectable0,dectable1,enctable0,enctable1); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/huffman/HuffmanSorting.hpp:534:42: warning: variable ‘alldecoffset’ set but not used [-Wunused-but-set-variable=] 534 | uint64_t alldecoffset = highdecoffset; | ^~~~~~~~~~~~ ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 1]’: ./libmaus2/huffman/CanonicalEncoder.hpp:219:116: required from here 219 | return ::libmaus2::huffman::EncodeTable<1>::unique_ptr_type(new ::libmaus2::huffman::EncodeTable<1>(Ptree.get())); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/fm/MausFmToBwaConversion.cpp -o libmaus2/fm/la-MausFmToBwaConversion.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/util/la-TempFileNameGenerator.lo `test -f 'libmaus2/util/TempFileNameGenerator.cpp' || echo './'`libmaus2/util/TempFileNameGenerator.cpp libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/util/TempFileNameGenerator.cpp -fPIC -DPIC -o libmaus2/util/.libs/la-TempFileNameGenerator.o libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/util/TempFileNameGenerator.cpp -o libmaus2/util/la-TempFileNameGenerator.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/util/la-TempFileNameGeneratorState.lo `test -f 'libmaus2/util/TempFileNameGeneratorState.cpp' || echo './'`libmaus2/util/TempFileNameGeneratorState.cpp libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/util/TempFileNameGeneratorState.cpp -fPIC -DPIC -o libmaus2/util/.libs/la-TempFileNameGeneratorState.o libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/util/TempFileNameGeneratorState.cpp -o libmaus2/util/la-TempFileNameGeneratorState.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/util/la-ArgInfo.lo `test -f 'libmaus2/util/ArgInfo.cpp' || echo './'`libmaus2/util/ArgInfo.cpp libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/util/ArgInfo.cpp -fPIC -DPIC -o libmaus2/util/.libs/la-ArgInfo.o libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/util/ArgInfo.cpp -o libmaus2/util/la-ArgInfo.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/util/la-BitList.lo `test -f 'libmaus2/util/BitList.cpp' || echo './'`libmaus2/util/BitList.cpp libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/util/BitList.cpp -fPIC -DPIC -o libmaus2/util/.libs/la-BitList.o libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/util/BitList.cpp -o libmaus2/util/la-BitList.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/util/la-VarBitList.lo `test -f 'libmaus2/util/VarBitList.cpp' || echo './'`libmaus2/util/VarBitList.cpp libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/util/VarBitList.cpp -fPIC -DPIC -o libmaus2/util/.libs/la-VarBitList.o libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 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-D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/util/Concat.cpp -o libmaus2/util/la-Concat.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 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libmaus2/util/.libs/la-ConcatRequest.o libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/util/ConcatRequest.cpp -o libmaus2/util/la-ConcatRequest.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/util/la-ConsoleColor.lo `test -f 'libmaus2/util/ConsoleColor.cpp' || echo './'`libmaus2/util/ConsoleColor.cpp libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/util/ConsoleColor.cpp -fPIC -DPIC -o libmaus2/util/.libs/la-ConsoleColor.o libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/util/ConsoleColor.cpp -o libmaus2/util/la-ConsoleColor.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/util/la-DynamicLoading.lo `test -f 'libmaus2/util/DynamicLoading.cpp' || echo './'`libmaus2/util/DynamicLoading.cpp libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/util/DynamicLoading.cpp -fPIC -DPIC -o libmaus2/util/.libs/la-DynamicLoading.o libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/util/DynamicLoading.cpp -o libmaus2/util/la-DynamicLoading.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/util/la-GetFileSize.lo `test -f 'libmaus2/util/GetFileSize.cpp' || echo './'`libmaus2/util/GetFileSize.cpp libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/util/GetFileSize.cpp -fPIC -DPIC -o libmaus2/util/.libs/la-GetFileSize.o libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/util/GetFileSize.cpp -o libmaus2/util/la-GetFileSize.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/util/la-Histogram.lo `test -f 'libmaus2/util/Histogram.cpp' || echo './'`libmaus2/util/Histogram.cpp libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/util/Histogram.cpp -fPIC -DPIC -o libmaus2/util/.libs/la-Histogram.o In file included from /usr/arm-linux-gnueabihf/include/c++/16/algorithm:63, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/util/Histogram.hpp:23, from libmaus2/util/Histogram.cpp:20: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h: In function ‘constexpr void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = less]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1770:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1770 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1770:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:61: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h: In function ‘constexpr void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Distance = int; _Tp = pair; _Compare = less]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:229:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 229 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h: In function ‘constexpr void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Size = int; _Compare = less]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1884:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1884 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1884:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1898:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1898 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘constexpr void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = less]’, inlined from ‘constexpr void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator*, vector > >]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:4817:18, inlined from ‘std::vector > libmaus2::util::Histogram::getFreqSymVector()’ at libmaus2/util/Histogram.cpp:145:12: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1913:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1913 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1914 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1915 | __comp); | ~~~~~~~ In function ‘constexpr void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = less]’, inlined from ‘constexpr void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = less]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1916:31, inlined from ‘constexpr void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator*, vector > >]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:4817:18, inlined from ‘std::vector > libmaus2::util::Histogram::getFreqSymVector()’ at libmaus2/util/Histogram.cpp:145:12: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1821:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1821 | std::__insertion_sort(__first, __first + __threshold, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1826:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1826 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/util/Histogram.cpp -o libmaus2/util/la-Histogram.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/util/la-HistogramSet.lo `test -f 'libmaus2/util/HistogramSet.cpp' || echo './'`libmaus2/util/HistogramSet.cpp libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/util/HistogramSet.cpp -fPIC -DPIC -o libmaus2/util/.libs/la-HistogramSet.o libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/util/HistogramSet.cpp -o libmaus2/util/la-HistogramSet.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/util/la-IncreasingList.lo `test -f 'libmaus2/util/IncreasingList.cpp' || echo './'`libmaus2/util/IncreasingList.cpp libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/util/IncreasingList.cpp -fPIC -DPIC -o libmaus2/util/.libs/la-IncreasingList.o In file included from /usr/arm-linux-gnueabihf/include/c++/16/algorithm:63, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/util/IncreasingList.hpp:23, from libmaus2/util/IncreasingList.cpp:20: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h: In function ‘constexpr void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = less]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1884:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1884 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1884:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1898:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1898 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘constexpr void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = less]’, inlined from ‘constexpr void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:4817:18, inlined from ‘static void libmaus2::util::IncreasingList::test(const std::vector&)’ at libmaus2/util/IncreasingList.cpp:44:12: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1913:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1913 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1914 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1915 | __comp); | ~~~~~~~ libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/util/IncreasingList.cpp -o libmaus2/util/la-IncreasingList.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/util/la-IntervalTree.lo `test -f 'libmaus2/util/IntervalTree.cpp' || echo './'`libmaus2/util/IntervalTree.cpp libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/util/IntervalTree.cpp -fPIC -DPIC -o libmaus2/util/.libs/la-IntervalTree.o In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/util/IntervalTree.hpp:25, from libmaus2/util/IntervalTree.cpp:20: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/util/IntervalTree.cpp -o libmaus2/util/la-IntervalTree.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/util/la-GenericIntervalTree.lo `test -f 'libmaus2/util/GenericIntervalTree.cpp' || echo './'`libmaus2/util/GenericIntervalTree.cpp libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/util/GenericIntervalTree.cpp -fPIC -DPIC -o libmaus2/util/.libs/la-GenericIntervalTree.o In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/util/IntervalTree.hpp:25, from ./libmaus2/util/GenericIntervalTree.hpp:23, from libmaus2/util/GenericIntervalTree.cpp:20: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/util/GenericIntervalTree.cpp -o libmaus2/util/la-GenericIntervalTree.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/util/la-LookupIntervalTree.lo `test -f 'libmaus2/util/LookupIntervalTree.cpp' || echo './'`libmaus2/util/LookupIntervalTree.cpp libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/util/LookupIntervalTree.cpp -fPIC -DPIC -o libmaus2/util/.libs/la-LookupIntervalTree.o In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/util/IntervalTree.hpp:25, from ./libmaus2/util/LookupIntervalTree.hpp:22, from libmaus2/util/LookupIntervalTree.cpp:20: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/util/LookupIntervalTree.cpp -o libmaus2/util/la-LookupIntervalTree.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/digest/la-md5_interface.lo `test -f 'libmaus2/digest/md5_interface.cpp' || echo './'`libmaus2/digest/md5_interface.cpp libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/digest/md5_interface.cpp -fPIC -DPIC -o libmaus2/digest/.libs/la-md5_interface.o libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE 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--mode=compile arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/util/la-Utf8String.lo `test -f 'libmaus2/util/Utf8String.cpp' || echo './'`libmaus2/util/Utf8String.cpp libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/util/Utf8String.cpp -fPIC -DPIC -o libmaus2/util/.libs/la-Utf8String.o libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/util/Utf8String.cpp -o libmaus2/util/la-Utf8String.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/util/la-Utf8BlockIndexDecoder.lo `test -f 'libmaus2/util/Utf8BlockIndexDecoder.cpp' || echo './'`libmaus2/util/Utf8BlockIndexDecoder.cpp libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/util/Utf8BlockIndexDecoder.cpp -fPIC -DPIC -o libmaus2/util/.libs/la-Utf8BlockIndexDecoder.o libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/util/Utf8BlockIndexDecoder.cpp -o libmaus2/util/la-Utf8BlockIndexDecoder.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/util/la-Utf8BlockIndex.lo `test -f 'libmaus2/util/Utf8BlockIndex.cpp' || echo './'`libmaus2/util/Utf8BlockIndex.cpp libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/util/Utf8BlockIndex.cpp -fPIC -DPIC -o libmaus2/util/.libs/la-Utf8BlockIndex.o libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/util/Utf8BlockIndex.cpp -o libmaus2/util/la-Utf8BlockIndex.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/util/la-Utf8DecoderBuffer.lo `test -f 'libmaus2/util/Utf8DecoderBuffer.cpp' || echo './'`libmaus2/util/Utf8DecoderBuffer.cpp libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/util/Utf8DecoderBuffer.cpp -fPIC -DPIC -o libmaus2/util/.libs/la-Utf8DecoderBuffer.o libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/util/Utf8DecoderBuffer.cpp -o libmaus2/util/la-Utf8DecoderBuffer.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/util/la-Utf8DecoderWrapper.lo `test -f 'libmaus2/util/Utf8DecoderWrapper.cpp' || echo './'`libmaus2/util/Utf8DecoderWrapper.cpp libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/util/Utf8DecoderWrapper.cpp -fPIC -DPIC -o libmaus2/util/.libs/la-Utf8DecoderWrapper.o libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/util/Utf8DecoderWrapper.cpp -o libmaus2/util/la-Utf8DecoderWrapper.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/suffixtree/la-CompressedSuffixTree.lo `test -f 'libmaus2/suffixtree/CompressedSuffixTree.cpp' || echo './'`libmaus2/suffixtree/CompressedSuffixTree.cpp libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixtree/CompressedSuffixTree.cpp -fPIC -DPIC -o libmaus2/suffixtree/.libs/la-CompressedSuffixTree.o In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/huffman/HuffmanTree.hpp:25, from ./libmaus2/wavelet/ImpCompactHuffmanWaveletTree.hpp:26, from ./libmaus2/lf/ImpCompactHuffmanWaveletLF.hpp:23, from ./libmaus2/suffixtree/CompressedSuffixTree.hpp:22, from libmaus2/suffixtree/CompressedSuffixTree.cpp:19: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/huffman/huffman.hpp:183, from ./libmaus2/util/ImpCompactNumberArray.hpp:26, from ./libmaus2/rmq/RMMTree.hpp:22, from ./libmaus2/suffixtree/CompressedSuffixTree.hpp:26: ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 2]’: ./libmaus2/huffman/HuffmanSorting.hpp:860:55: required from here 860 | huffman::EncodeTable enctable ( root ); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:188: ./libmaus2/huffman/HuffmanSorting.hpp: In instantiation of ‘static void libmaus2::huffman::HuffmanSorting::uncompressHuffmanCoded(uint64_t*, uint64_t, uint64_t, uint64_t, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::HuffmanTreeNode*, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::EncodeTable&) [with unsigned int lookupwords = 2; uint64_t = long long unsigned int]’: ./libmaus2/huffman/HuffmanSorting.hpp:1091:27: required from here 1091 | uncompressHuffmanCoded(acode.get(), 0 /* bit offset */, lowhalf /* syms */, firsthighsym, enctable,dectable,root.get(),dectable0,dectable1,enctable0,enctable1); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/huffman/HuffmanSorting.hpp:534:42: warning: variable ‘alldecoffset’ set but not used [-Wunused-but-set-variable=] 534 | uint64_t alldecoffset = highdecoffset; | ^~~~~~~~~~~~ ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 1]’: ./libmaus2/wavelet/ImpHuffmanWaveletTree.hpp:302:54: required from here 302 | : n(rn), sroot(rsroot), dicts(numnodes), root(0), enctable(sroot.get()), maxdepth(0), nodepos(rnodepos) | ^~~~~~~~~~~~~~~~~~~~~ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixtree/CompressedSuffixTree.cpp -o libmaus2/suffixtree/la-CompressedSuffixTree.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/bambam/la-AlignmentValidity.lo `test -f 'libmaus2/bambam/AlignmentValidity.cpp' || echo './'`libmaus2/bambam/AlignmentValidity.cpp libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/AlignmentValidity.cpp -fPIC -DPIC -o libmaus2/bambam/.libs/la-AlignmentValidity.o libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/AlignmentValidity.cpp -o libmaus2/bambam/la-AlignmentValidity.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/bambam/la-BamFlagBase.lo `test -f 'libmaus2/bambam/BamFlagBase.cpp' || echo './'`libmaus2/bambam/BamFlagBase.cpp libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/BamFlagBase.cpp -fPIC -DPIC -o libmaus2/bambam/.libs/la-BamFlagBase.o libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/BamFlagBase.cpp -o libmaus2/bambam/la-BamFlagBase.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/bambam/la-ReadGroup.lo `test -f 'libmaus2/bambam/ReadGroup.cpp' || echo './'`libmaus2/bambam/ReadGroup.cpp libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/ReadGroup.cpp -fPIC -DPIC -o libmaus2/bambam/.libs/la-ReadGroup.o libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/ReadGroup.cpp -o libmaus2/bambam/la-ReadGroup.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/bambam/la-DuplicationMetrics.lo `test -f 'libmaus2/bambam/DuplicationMetrics.cpp' || echo './'`libmaus2/bambam/DuplicationMetrics.cpp libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/DuplicationMetrics.cpp -fPIC -DPIC -o libmaus2/bambam/.libs/la-DuplicationMetrics.o libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/DuplicationMetrics.cpp -o libmaus2/bambam/la-DuplicationMetrics.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/bambam/la-BamDefaultAdapters.lo `test -f 'libmaus2/bambam/BamDefaultAdapters.cpp' || echo './'`libmaus2/bambam/BamDefaultAdapters.cpp libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/BamDefaultAdapters.cpp -fPIC -DPIC -o libmaus2/bambam/.libs/la-BamDefaultAdapters.o libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/BamDefaultAdapters.cpp -o libmaus2/bambam/la-BamDefaultAdapters.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/bambam/la-BamRange.lo `test -f 'libmaus2/bambam/BamRange.cpp' || echo './'`libmaus2/bambam/BamRange.cpp libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/BamRange.cpp -fPIC -DPIC -o libmaus2/bambam/.libs/la-BamRange.o In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/bambam/BamAuxFilterVector.hpp:22, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:27, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamRange.hpp:22, from libmaus2/bambam/BamRange.cpp:20: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/bambam/CigarStringParser.hpp:25, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/BamRange.cpp -o libmaus2/bambam/la-BamRange.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/bambam/la-BamIndexBinChunk.lo `test -f 'libmaus2/bambam/BamIndexBinChunk.cpp' || echo './'`libmaus2/bambam/BamIndexBinChunk.cpp libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/BamIndexBinChunk.cpp -fPIC -DPIC -o libmaus2/bambam/.libs/la-BamIndexBinChunk.o libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/BamIndexBinChunk.cpp -o libmaus2/bambam/la-BamIndexBinChunk.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/bambam/la-BamIndexLinearChunk.lo `test -f 'libmaus2/bambam/BamIndexLinearChunk.cpp' || echo './'`libmaus2/bambam/BamIndexLinearChunk.cpp libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/BamIndexLinearChunk.cpp -fPIC -DPIC -o libmaus2/bambam/.libs/la-BamIndexLinearChunk.o libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/BamIndexLinearChunk.cpp -o libmaus2/bambam/la-BamIndexLinearChunk.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/huffman/la-HuffmanTree.lo `test -f 'libmaus2/huffman/HuffmanTree.cpp' || echo './'`libmaus2/huffman/HuffmanTree.cpp libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/huffman/HuffmanTree.cpp -fPIC -DPIC -o libmaus2/huffman/.libs/la-HuffmanTree.o In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/huffman/HuffmanTree.hpp:25, from libmaus2/huffman/HuffmanTree.cpp:19: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/huffman/HuffmanTree.cpp -o libmaus2/huffman/la-HuffmanTree.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/bambam/la-BamAlignmentDecoderInfo.lo `test -f 'libmaus2/bambam/BamAlignmentDecoderInfo.cpp' || echo './'`libmaus2/bambam/BamAlignmentDecoderInfo.cpp libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/BamAlignmentDecoderInfo.cpp -fPIC -DPIC -o libmaus2/bambam/.libs/la-BamAlignmentDecoderInfo.o libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/BamAlignmentDecoderInfo.cpp -o libmaus2/bambam/la-BamAlignmentDecoderInfo.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/lz/la-Lz4Base.lo `test -f 'libmaus2/lz/Lz4Base.cpp' || echo './'`libmaus2/lz/Lz4Base.cpp libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lz/Lz4Base.cpp -fPIC -DPIC -o libmaus2/lz/.libs/la-Lz4Base.o libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lz/Lz4Base.cpp -o libmaus2/lz/la-Lz4Base.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/lz/la-Lz4Compress.lo `test -f 'libmaus2/lz/Lz4Compress.cpp' || echo './'`libmaus2/lz/Lz4Compress.cpp libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lz/Lz4Compress.cpp -fPIC -DPIC -o libmaus2/lz/.libs/la-Lz4Compress.o libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lz/Lz4Compress.cpp -o libmaus2/lz/la-Lz4Compress.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/lz/la-Lz4DecoderBuffer.lo `test -f 'libmaus2/lz/Lz4DecoderBuffer.cpp' || echo './'`libmaus2/lz/Lz4DecoderBuffer.cpp libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lz/Lz4DecoderBuffer.cpp -fPIC -DPIC -o libmaus2/lz/.libs/la-Lz4DecoderBuffer.o libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lz/Lz4DecoderBuffer.cpp -o libmaus2/lz/la-Lz4DecoderBuffer.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=compile arm-linux-gnueabihf-gcc -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/lz/la-lz4.lo `test -f 'libmaus2/lz/lz4.c' || echo './'`libmaus2/lz/lz4.c libtool: compile: arm-linux-gnueabihf-gcc -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration 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-pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/lcs/la-LocalEditDistanceResult.lo `test -f 'libmaus2/lcs/LocalEditDistanceResult.cpp' || echo './'`libmaus2/lcs/LocalEditDistanceResult.cpp libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread 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-D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/bambam/la-BamHeaderParserStateBase.lo `test -f 'libmaus2/bambam/BamHeaderParserStateBase.cpp' || echo './'`libmaus2/bambam/BamHeaderParserStateBase.cpp libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/BamHeaderParserStateBase.cpp -fPIC -DPIC -o libmaus2/bambam/.libs/la-BamHeaderParserStateBase.o libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/BamHeaderParserStateBase.cpp -o libmaus2/bambam/la-BamHeaderParserStateBase.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/bambam/la-GeneFlatFile.lo `test -f 'libmaus2/bambam/GeneFlatFile.cpp' || echo './'`libmaus2/bambam/GeneFlatFile.cpp libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/GeneFlatFile.cpp -fPIC -DPIC -o libmaus2/bambam/.libs/la-GeneFlatFile.o libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/GeneFlatFile.cpp -o libmaus2/bambam/la-GeneFlatFile.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/bambam/la-GeneFlatFileEntry.lo `test -f 'libmaus2/bambam/GeneFlatFileEntry.cpp' || echo './'`libmaus2/bambam/GeneFlatFileEntry.cpp libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/GeneFlatFileEntry.cpp -fPIC -DPIC -o libmaus2/bambam/.libs/la-GeneFlatFileEntry.o libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/GeneFlatFileEntry.cpp -o libmaus2/bambam/la-GeneFlatFileEntry.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/trie/la-SimpleTrie.lo `test -f 'libmaus2/trie/SimpleTrie.cpp' || echo './'`libmaus2/trie/SimpleTrie.cpp libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/trie/SimpleTrie.cpp -fPIC -DPIC -o libmaus2/trie/.libs/la-SimpleTrie.o libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/trie/SimpleTrie.cpp -o libmaus2/trie/la-SimpleTrie.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/bambam/la-BamStreamingMarkDuplicatesSupport.lo `test -f 'libmaus2/bambam/BamStreamingMarkDuplicatesSupport.cpp' || echo './'`libmaus2/bambam/BamStreamingMarkDuplicatesSupport.cpp libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/BamStreamingMarkDuplicatesSupport.cpp -fPIC -DPIC -o libmaus2/bambam/.libs/la-BamStreamingMarkDuplicatesSupport.o In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/bambam/BamAuxFilterVector.hpp:22, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:27, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamStreamingMarkDuplicatesSupport.hpp:22, from libmaus2/bambam/BamStreamingMarkDuplicatesSupport.cpp:19: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/bambam/CigarStringParser.hpp:25, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ In file included from ./libmaus2/bambam/BamAlignmentDecoder.hpp:24, from ./libmaus2/bambam/BamStreamingMarkDuplicatesSupport.hpp:23: ./libmaus2/bambam/BamHeaderLowMem.hpp: In member function ‘void libmaus2::bambam::BamHeaderLowMem::setupFromText()’: ./libmaus2/bambam/BamHeaderLowMem.hpp:366:58: warning: variable ‘ln’ set but not used [-Wunused-but-set-variable=] 366 | uint64_t ln = 0; | ^~ libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/BamStreamingMarkDuplicatesSupport.cpp -o libmaus2/bambam/la-BamStreamingMarkDuplicatesSupport.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/alignment/la-FactorMatchInfo.lo `test -f 'libmaus2/alignment/FactorMatchInfo.cpp' || echo './'`libmaus2/alignment/FactorMatchInfo.cpp libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/alignment/FactorMatchInfo.cpp -fPIC -DPIC -o libmaus2/alignment/.libs/la-FactorMatchInfo.o libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/alignment/FactorMatchInfo.cpp -o libmaus2/alignment/la-FactorMatchInfo.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong 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libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/digest/SHA2_384.cpp -o libmaus2/digest/la-SHA2_384.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/digest/la-SHA2_512.lo `test -f 'libmaus2/digest/SHA2_512.cpp' || echo './'`libmaus2/digest/SHA2_512.cpp libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 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--mode=compile arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/digest/la-CRC32.lo `test -f 'libmaus2/digest/CRC32.cpp' || echo './'`libmaus2/digest/CRC32.cpp libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/digest/CRC32.cpp -fPIC -DPIC -o libmaus2/digest/.libs/la-CRC32.o libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/digest/CRC32.cpp -o libmaus2/digest/la-CRC32.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/digest/la-CRC32C_Core.lo `test -f 'libmaus2/digest/CRC32C_Core.cpp' || echo './'`libmaus2/digest/CRC32C_Core.cpp libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/digest/CRC32C_Core.cpp -fPIC -DPIC -o libmaus2/digest/.libs/la-CRC32C_Core.o libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/digest/CRC32C_Core.cpp -o libmaus2/digest/la-CRC32C_Core.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/digest/la-CRC32C.lo `test -f 'libmaus2/digest/CRC32C.cpp' || echo './'`libmaus2/digest/CRC32C.cpp libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/digest/CRC32C.cpp -fPIC -DPIC -o libmaus2/digest/.libs/la-CRC32C.o libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/digest/CRC32C.cpp -o libmaus2/digest/la-CRC32C.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/digest/la-CRC32_Core.lo `test -f 'libmaus2/digest/CRC32_Core.cpp' || echo './'`libmaus2/digest/CRC32_Core.cpp libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/digest/CRC32_Core.cpp -fPIC -DPIC -o libmaus2/digest/.libs/la-CRC32_Core.o libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/digest/CRC32_Core.cpp -o libmaus2/digest/la-CRC32_Core.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/bambam/parallel/la-ValidationFragment.lo `test -f 'libmaus2/bambam/parallel/ValidationFragment.cpp' || echo './'`libmaus2/bambam/parallel/ValidationFragment.cpp libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/parallel/ValidationFragment.cpp -fPIC -DPIC -o libmaus2/bambam/parallel/.libs/la-ValidationFragment.o In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/bambam/BamAuxFilterVector.hpp:22, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:27, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/parallel/PushBackSpace.hpp:22, from ./libmaus2/bambam/parallel/AlignmentBuffer.hpp:22, from ./libmaus2/bambam/parallel/ValidationFragment.hpp:22, from libmaus2/bambam/parallel/ValidationFragment.cpp:19: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/bambam/CigarStringParser.hpp:25, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/parallel/ValidationFragment.cpp -o libmaus2/bambam/parallel/la-ValidationFragment.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/bambam/parallel/la-GenericInputControlStreamInfo.lo `test -f 'libmaus2/bambam/parallel/GenericInputControlStreamInfo.cpp' || echo './'`libmaus2/bambam/parallel/GenericInputControlStreamInfo.cpp libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/parallel/GenericInputControlStreamInfo.cpp -fPIC -DPIC -o libmaus2/bambam/parallel/.libs/la-GenericInputControlStreamInfo.o libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c 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-D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/fastx/NameInfoBase.cpp -fPIC -DPIC -o libmaus2/fastx/.libs/la-NameInfoBase.o libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE 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../libtool --tag=CXX --mode=compile arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/dazzler/db/la-Read.lo `test -f 'libmaus2/dazzler/db/Read.cpp' || echo './'`libmaus2/dazzler/db/Read.cpp libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/dazzler/db/Read.cpp -fPIC -DPIC -o libmaus2/dazzler/db/.libs/la-Read.o libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/dazzler/db/Read.cpp -o libmaus2/dazzler/db/la-Read.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/dazzler/align/la-Path.lo `test -f 'libmaus2/dazzler/align/Path.cpp' || echo './'`libmaus2/dazzler/align/Path.cpp libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/dazzler/align/Path.cpp -fPIC -DPIC -o libmaus2/dazzler/align/.libs/la-Path.o libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/dazzler/align/Path.cpp -o libmaus2/dazzler/align/la-Path.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/dazzler/align/la-Overlap.lo `test -f 'libmaus2/dazzler/align/Overlap.cpp' || echo './'`libmaus2/dazzler/align/Overlap.cpp libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/dazzler/align/Overlap.cpp -fPIC -DPIC -o libmaus2/dazzler/align/.libs/la-Overlap.o In file included from ./libmaus2/lcs/Aligner.hpp:21, from ./libmaus2/dazzler/align/Overlap.hpp:22, from libmaus2/dazzler/align/Overlap.cpp:18: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/dazzler/align/Overlap.cpp -o libmaus2/dazzler/align/la-Overlap.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/lcs/la-AlignmentStatistics.lo `test -f 'libmaus2/lcs/AlignmentStatistics.cpp' || echo './'`libmaus2/lcs/AlignmentStatistics.cpp libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lcs/AlignmentStatistics.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/la-AlignmentStatistics.o libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lcs/AlignmentStatistics.cpp -o libmaus2/lcs/la-AlignmentStatistics.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/fastx/la-SingleWordDNABitBuffer.lo `test -f 'libmaus2/fastx/SingleWordDNABitBuffer.cpp' || echo './'`libmaus2/fastx/SingleWordDNABitBuffer.cpp libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/fastx/SingleWordDNABitBuffer.cpp -fPIC -DPIC -o libmaus2/fastx/.libs/la-SingleWordDNABitBuffer.o libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/fastx/SingleWordDNABitBuffer.cpp -o libmaus2/fastx/la-SingleWordDNABitBuffer.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/util/la-LongestIncreasingSubsequenceExtendedResult.lo `test -f 'libmaus2/util/LongestIncreasingSubsequenceExtendedResult.cpp' || echo './'`libmaus2/util/LongestIncreasingSubsequenceExtendedResult.cpp libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/util/LongestIncreasingSubsequenceExtendedResult.cpp -fPIC -DPIC -o libmaus2/util/.libs/la-LongestIncreasingSubsequenceExtendedResult.o libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/util/LongestIncreasingSubsequenceExtendedResult.cpp -o libmaus2/util/la-LongestIncreasingSubsequenceExtendedResult.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/lcs/la-AlignerFactory.lo `test -f 'libmaus2/lcs/AlignerFactory.cpp' || echo './'`libmaus2/lcs/AlignerFactory.cpp libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lcs/AlignerFactory.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/la-AlignerFactory.o In file included from ./libmaus2/lcs/Aligner.hpp:21, from ./libmaus2/lcs/AlignerFactory.hpp:21, from libmaus2/lcs/AlignerFactory.cpp:19: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lcs/AlignerFactory.cpp -o libmaus2/lcs/la-AlignerFactory.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/lcs/la-BandedAlignerFactory.lo `test -f 'libmaus2/lcs/BandedAlignerFactory.cpp' || echo './'`libmaus2/lcs/BandedAlignerFactory.cpp libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lcs/BandedAlignerFactory.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/la-BandedAlignerFactory.o In file included from ./libmaus2/lcs/BandedAligner.hpp:21, from ./libmaus2/lcs/BandedAlignerFactory.hpp:21, from libmaus2/lcs/BandedAlignerFactory.cpp:19: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lcs/BandedAlignerFactory.cpp -o libmaus2/lcs/la-BandedAlignerFactory.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/aio/la-InputStreamInstance.lo `test -f 'libmaus2/aio/InputStreamInstance.cpp' || echo './'`libmaus2/aio/InputStreamInstance.cpp libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/aio/InputStreamInstance.cpp -fPIC -DPIC -o libmaus2/aio/.libs/la-InputStreamInstance.o libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/aio/InputStreamInstance.cpp -o libmaus2/aio/la-InputStreamInstance.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/aio/la-OutputStreamInstance.lo `test -f 'libmaus2/aio/OutputStreamInstance.cpp' || echo './'`libmaus2/aio/OutputStreamInstance.cpp libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/aio/OutputStreamInstance.cpp -fPIC -DPIC -o libmaus2/aio/.libs/la-OutputStreamInstance.o libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/aio/OutputStreamInstance.cpp -o libmaus2/aio/la-OutputStreamInstance.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/aio/la-OutputStreamFactoryContainer.lo `test -f 'libmaus2/aio/OutputStreamFactoryContainer.cpp' || echo './'`libmaus2/aio/OutputStreamFactoryContainer.cpp libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/aio/OutputStreamFactoryContainer.cpp -fPIC -DPIC -o libmaus2/aio/.libs/la-OutputStreamFactoryContainer.o libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/aio/OutputStreamFactoryContainer.cpp -o libmaus2/aio/la-OutputStreamFactoryContainer.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/dazzler/align/la-TraceBlock.lo `test -f 'libmaus2/dazzler/align/TraceBlock.cpp' || echo './'`libmaus2/dazzler/align/TraceBlock.cpp libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/dazzler/align/TraceBlock.cpp -fPIC -DPIC -o libmaus2/dazzler/align/.libs/la-TraceBlock.o libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/dazzler/align/TraceBlock.cpp -o libmaus2/dazzler/align/la-TraceBlock.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/dazzler/align/la-ApproximateRun.lo `test -f 'libmaus2/dazzler/align/ApproximateRun.cpp' || echo './'`libmaus2/dazzler/align/ApproximateRun.cpp libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/dazzler/align/ApproximateRun.cpp -fPIC -DPIC -o libmaus2/dazzler/align/.libs/la-ApproximateRun.o libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/dazzler/align/ApproximateRun.cpp -o libmaus2/dazzler/align/la-ApproximateRun.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/suffixsort/la-BwtMergeBlockSortRequest.lo `test -f 'libmaus2/suffixsort/BwtMergeBlockSortRequest.cpp' || echo './'`libmaus2/suffixsort/BwtMergeBlockSortRequest.cpp libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/BwtMergeBlockSortRequest.cpp -fPIC -DPIC -o libmaus2/suffixsort/.libs/la-BwtMergeBlockSortRequest.o In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/huffman/HuffmanTree.hpp:25, from ./libmaus2/suffixsort/BwtMergeBlockSortRequest.hpp:23, from libmaus2/suffixsort/BwtMergeBlockSortRequest.cpp:19: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/suffixsort/BwtMergeTempFileNameSet.hpp:27, from ./libmaus2/suffixsort/BwtMergeBlockSortResult.hpp:22, from ./libmaus2/suffixsort/BwtMergeBlockSortRequest.hpp:30: ./libmaus2/util/DirectoryStructure.hpp: In member function ‘std::string libmaus2::util::DirectoryStructure::printGenerate(std::ostream&, std::string, uint64_t) const’: ./libmaus2/util/DirectoryStructure.hpp:207:58: warning: variable ‘batchcnt’ set but not used [-Wunused-but-set-variable=] 207 | uint64_t batchcnt = 0; | ^~~~~~~~ ./libmaus2/util/DirectoryStructure.hpp: In member function ‘std::string libmaus2::util::DirectoryStructure::printRemove(std::ostream&, std::string, uint64_t) const’: ./libmaus2/util/DirectoryStructure.hpp:282:58: warning: variable ‘batchcnt’ set but not used [-Wunused-but-set-variable=] 282 | uint64_t batchcnt = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:183, from ./libmaus2/suffixsort/BwtMergeBlockSortRequest.hpp:24: ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 2]’: ./libmaus2/huffman/HuffmanSorting.hpp:860:55: required from here 860 | huffman::EncodeTable enctable ( root ); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:188: ./libmaus2/huffman/HuffmanSorting.hpp: In instantiation of ‘static void libmaus2::huffman::HuffmanSorting::uncompressHuffmanCoded(uint64_t*, uint64_t, uint64_t, uint64_t, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::HuffmanTreeNode*, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::EncodeTable&) [with unsigned int lookupwords = 2; uint64_t = long long unsigned int]’: ./libmaus2/huffman/HuffmanSorting.hpp:1091:27: required from here 1091 | uncompressHuffmanCoded(acode.get(), 0 /* bit offset */, lowhalf /* syms */, firsthighsym, enctable,dectable,root.get(),dectable0,dectable1,enctable0,enctable1); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/huffman/HuffmanSorting.hpp:534:42: warning: variable ‘alldecoffset’ set but not used [-Wunused-but-set-variable=] 534 | uint64_t alldecoffset = highdecoffset; | ^~~~~~~~~~~~ ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 1]’: ./libmaus2/huffman/CanonicalEncoder.hpp:219:116: required from here 219 | return ::libmaus2::huffman::EncodeTable<1>::unique_ptr_type(new ::libmaus2::huffman::EncodeTable<1>(Ptree.get())); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/BwtMergeBlockSortRequest.cpp -o libmaus2/suffixsort/la-BwtMergeBlockSortRequest.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/dazzler/align/la-OverlapMeta.lo `test -f 'libmaus2/dazzler/align/OverlapMeta.cpp' || echo './'`libmaus2/dazzler/align/OverlapMeta.cpp libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/dazzler/align/OverlapMeta.cpp -fPIC -DPIC -o libmaus2/dazzler/align/.libs/la-OverlapMeta.o In file included from ./libmaus2/lcs/Aligner.hpp:21, from ./libmaus2/dazzler/align/Overlap.hpp:22, from ./libmaus2/dazzler/align/OverlapMeta.hpp:21, from libmaus2/dazzler/align/OverlapMeta.cpp:18: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/dazzler/align/OverlapMeta.cpp -o libmaus2/dazzler/align/la-OverlapMeta.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/dazzler/align/la-Tandem.lo `test -f 'libmaus2/dazzler/align/Tandem.cpp' || echo './'`libmaus2/dazzler/align/Tandem.cpp libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/dazzler/align/Tandem.cpp -fPIC -DPIC -o libmaus2/dazzler/align/.libs/la-Tandem.o In file included from ./libmaus2/lcs/Aligner.hpp:21, from ./libmaus2/dazzler/align/Overlap.hpp:22, from ./libmaus2/dazzler/align/OverlapMeta.hpp:21, from ./libmaus2/dazzler/align/Tandem.hpp:21, from libmaus2/dazzler/align/Tandem.cpp:19: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/dazzler/align/Tandem.cpp -o libmaus2/dazzler/align/la-Tandem.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/dazzler/align/la-TandemVector.lo `test -f 'libmaus2/dazzler/align/TandemVector.cpp' || echo './'`libmaus2/dazzler/align/TandemVector.cpp libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/dazzler/align/TandemVector.cpp -fPIC -DPIC -o libmaus2/dazzler/align/.libs/la-TandemVector.o In file included from ./libmaus2/lcs/Aligner.hpp:21, from ./libmaus2/dazzler/align/Overlap.hpp:22, from ./libmaus2/dazzler/align/OverlapMeta.hpp:21, from ./libmaus2/dazzler/align/Tandem.hpp:21, from ./libmaus2/dazzler/align/TandemVector.hpp:21, from libmaus2/dazzler/align/TandemVector.cpp:18: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/dazzler/align/TandemVector.cpp -o libmaus2/dazzler/align/la-TandemVector.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/math/la-GmpInteger.lo `test -f 'libmaus2/math/GmpInteger.cpp' || echo './'`libmaus2/math/GmpInteger.cpp libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 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-D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/fastx/DNAIndexMetaDataSequence.cpp -fPIC -DPIC -o libmaus2/fastx/.libs/la-DNAIndexMetaDataSequence.o libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/fastx/DNAIndexMetaDataSequence.cpp -o libmaus2/fastx/la-DNAIndexMetaDataSequence.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/fastx/la-DNAIndexMetaData.lo `test -f 'libmaus2/fastx/DNAIndexMetaData.cpp' || echo './'`libmaus2/fastx/DNAIndexMetaData.cpp libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/fastx/DNAIndexMetaData.cpp -fPIC -DPIC -o libmaus2/fastx/.libs/la-DNAIndexMetaData.o libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/fastx/DNAIndexMetaData.cpp -o libmaus2/fastx/la-DNAIndexMetaData.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/bambam/la-PileVectorElement.lo `test -f 'libmaus2/bambam/PileVectorElement.cpp' || echo './'`libmaus2/bambam/PileVectorElement.cpp libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/PileVectorElement.cpp -fPIC -DPIC -o libmaus2/bambam/.libs/la-PileVectorElement.o libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/PileVectorElement.cpp -o libmaus2/bambam/la-PileVectorElement.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/bambam/la-PileQualityVectorElement.lo `test -f 'libmaus2/bambam/PileQualityVectorElement.cpp' || echo './'`libmaus2/bambam/PileQualityVectorElement.cpp libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/PileQualityVectorElement.cpp -fPIC -DPIC -o libmaus2/bambam/.libs/la-PileQualityVectorElement.o libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/PileQualityVectorElement.cpp -o libmaus2/bambam/la-PileQualityVectorElement.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/digest/la-SHA3_256.lo `test -f 'libmaus2/digest/SHA3_256.cpp' || echo './'`libmaus2/digest/SHA3_256.cpp libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/digest/SHA3_256.cpp -fPIC -DPIC -o libmaus2/digest/.libs/la-SHA3_256.o libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/digest/SHA3_256.cpp -o libmaus2/digest/la-SHA3_256.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/fastx/la-DNAIndexMetaDataBigBand.lo `test -f 'libmaus2/fastx/DNAIndexMetaDataBigBand.cpp' || echo './'`libmaus2/fastx/DNAIndexMetaDataBigBand.cpp libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/fastx/DNAIndexMetaDataBigBand.cpp -fPIC -DPIC -o libmaus2/fastx/.libs/la-DNAIndexMetaDataBigBand.o libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/fastx/DNAIndexMetaDataBigBand.cpp -o libmaus2/fastx/la-DNAIndexMetaDataBigBand.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/fastx/la-DNAIndexMetaDataBigBandBiDir.lo `test -f 'libmaus2/fastx/DNAIndexMetaDataBigBandBiDir.cpp' || echo './'`libmaus2/fastx/DNAIndexMetaDataBigBandBiDir.cpp libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/fastx/DNAIndexMetaDataBigBandBiDir.cpp -fPIC -DPIC -o libmaus2/fastx/.libs/la-DNAIndexMetaDataBigBandBiDir.o libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/fastx/DNAIndexMetaDataBigBandBiDir.cpp -o libmaus2/fastx/la-DNAIndexMetaDataBigBandBiDir.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/rank/la-DNARankBiDirRange.lo `test -f 'libmaus2/rank/DNARankBiDirRange.cpp' || echo './'`libmaus2/rank/DNARankBiDirRange.cpp libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/rank/DNARankBiDirRange.cpp -fPIC -DPIC -o libmaus2/rank/.libs/la-DNARankBiDirRange.o libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/rank/DNARankBiDirRange.cpp -o libmaus2/rank/la-DNARankBiDirRange.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/lcs/la-NNPTraceElement.lo `test -f 'libmaus2/lcs/NNPTraceElement.cpp' || echo './'`libmaus2/lcs/NNPTraceElement.cpp libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lcs/NNPTraceElement.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/la-NNPTraceElement.o libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lcs/NNPTraceElement.cpp -o libmaus2/lcs/la-NNPTraceElement.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/lcs/la-NNPTraceContainer.lo `test -f 'libmaus2/lcs/NNPTraceContainer.cpp' || echo './'`libmaus2/lcs/NNPTraceContainer.cpp libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lcs/NNPTraceContainer.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/la-NNPTraceContainer.o In file included from ./libmaus2/lcs/NNPTraceContainer.hpp:23, from libmaus2/lcs/NNPTraceContainer.cpp:18: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lcs/NNPTraceContainer.cpp -o libmaus2/lcs/la-NNPTraceContainer.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/lcs/la-NNPAlignResult.lo `test -f 'libmaus2/lcs/NNPAlignResult.cpp' || echo './'`libmaus2/lcs/NNPAlignResult.cpp libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lcs/NNPAlignResult.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/la-NNPAlignResult.o libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lcs/NNPAlignResult.cpp -o libmaus2/lcs/la-NNPAlignResult.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/suffixsort/bwtb3m/la-MergeStrategyMergeGapRequest.lo `test -f 'libmaus2/suffixsort/bwtb3m/MergeStrategyMergeGapRequest.cpp' || echo './'`libmaus2/suffixsort/bwtb3m/MergeStrategyMergeGapRequest.cpp libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/MergeStrategyMergeGapRequest.cpp -fPIC -DPIC -o libmaus2/suffixsort/bwtb3m/.libs/la-MergeStrategyMergeGapRequest.o In file included from ./libmaus2/suffixsort/BwtMergeTempFileNameSet.hpp:27, from ./libmaus2/suffixsort/BwtMergeBlockSortResult.hpp:22, from ./libmaus2/suffixsort/bwtb3m/MergeStrategyBlock.hpp:23, from ./libmaus2/suffixsort/bwtb3m/MergeStrategyMergeGapRequest.hpp:23, from libmaus2/suffixsort/bwtb3m/MergeStrategyMergeGapRequest.cpp:18: ./libmaus2/util/DirectoryStructure.hpp: In member function ‘std::string libmaus2::util::DirectoryStructure::printGenerate(std::ostream&, std::string, uint64_t) const’: ./libmaus2/util/DirectoryStructure.hpp:207:58: warning: variable ‘batchcnt’ set but not used [-Wunused-but-set-variable=] 207 | uint64_t batchcnt = 0; | ^~~~~~~~ ./libmaus2/util/DirectoryStructure.hpp: In member function ‘std::string libmaus2::util::DirectoryStructure::printRemove(std::ostream&, std::string, uint64_t) const’: ./libmaus2/util/DirectoryStructure.hpp:282:58: warning: variable ‘batchcnt’ set but not used [-Wunused-but-set-variable=] 282 | uint64_t batchcnt = 0; | ^~~~~~~~ libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/MergeStrategyMergeGapRequest.cpp -o libmaus2/suffixsort/bwtb3m/la-MergeStrategyMergeGapRequest.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/suffixsort/bwtb3m/la-BwtMergeSort.lo `test -f 'libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp' || echo './'`libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp -fPIC -DPIC -o libmaus2/suffixsort/bwtb3m/.libs/la-BwtMergeSort.o In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/util/IntervalTree.hpp:25, from ./libmaus2/gamma/GammaRLDecoder.hpp:28, from ./libmaus2/gamma/GammaRLEncoder.hpp:29, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:24, from ./libmaus2/suffixsort/bwtb3m/BwtMergeComputeSampledSA.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/suffixsort/bwtb3m/GapArrayWrapper.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeIsaParallelBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:24: ./libmaus2/util/AtomicArray.hpp: At global scope: ./libmaus2/util/AtomicArray.hpp:45:43: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 45 | AtomicArray(AtomicArray const & O) = delete; | ^~~~~~~~~~~~~~~~~ ./libmaus2/util/AtomicArray.hpp:45:43: note: remove the ‘< >’ In file included from ./libmaus2/suffixsort/bwtb3m/BwtMergeIsaParallelBase.hpp:24: ./libmaus2/suffixsort/GapArrayByte.hpp: In member function ‘void libmaus2::suffixsort::GapArrayByte::flush()’: ./libmaus2/suffixsort/GapArrayByte.hpp:134:42: warning: variable ‘overflowcnt’ set but not used [-Wunused-but-set-variable=] 134 | uint64_t overflowcnt = 0; | ^~~~~~~~~~~ In file included from ./libmaus2/suffixsort/BwtMergeTempFileNameSet.hpp:27, from ./libmaus2/suffixsort/BwtMergeBlockSortResult.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:33: ./libmaus2/util/DirectoryStructure.hpp: In member function ‘std::string libmaus2::util::DirectoryStructure::printGenerate(std::ostream&, std::string, uint64_t) const’: ./libmaus2/util/DirectoryStructure.hpp:207:58: warning: variable ‘batchcnt’ set but not used [-Wunused-but-set-variable=] 207 | uint64_t batchcnt = 0; | ^~~~~~~~ ./libmaus2/util/DirectoryStructure.hpp: In member function ‘std::string libmaus2::util::DirectoryStructure::printRemove(std::ostream&, std::string, uint64_t) const’: ./libmaus2/util/DirectoryStructure.hpp:282:58: warning: variable ‘batchcnt’ set but not used [-Wunused-but-set-variable=] 282 | uint64_t batchcnt = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:183, from ./libmaus2/huffman/CanonicalEncoder.hpp:26, from ./libmaus2/huffman/RLEncoder.hpp:25, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22: ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 2]’: ./libmaus2/huffman/HuffmanSorting.hpp:860:55: required from here 860 | huffman::EncodeTable enctable ( root ); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:188: ./libmaus2/huffman/HuffmanSorting.hpp: In instantiation of ‘static void libmaus2::huffman::HuffmanSorting::uncompressHuffmanCoded(uint64_t*, uint64_t, uint64_t, uint64_t, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::HuffmanTreeNode*, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::EncodeTable&) [with unsigned int lookupwords = 2; uint64_t = long long unsigned int]’: ./libmaus2/huffman/HuffmanSorting.hpp:1091:27: required from here 1091 | uncompressHuffmanCoded(acode.get(), 0 /* bit offset */, lowhalf /* syms */, firsthighsym, enctable,dectable,root.get(),dectable0,dectable1,enctable0,enctable1); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/huffman/HuffmanSorting.hpp:534:42: warning: variable ‘alldecoffset’ set but not used [-Wunused-but-set-variable=] 534 | uint64_t alldecoffset = highdecoffset; | ^~~~~~~~~~~~ ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 1]’: ./libmaus2/huffman/CanonicalEncoder.hpp:219:116: required from here 219 | return ::libmaus2::huffman::EncodeTable<1>::unique_ptr_type(new ::libmaus2::huffman::EncodeTable<1>(Ptree.get())); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/wavelet/RlToHwtBase.hpp:30, from ./libmaus2/wavelet/RlToHwtTermRequest.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:44: ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp: In instantiation of ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTree(libmaus2::autoarray::AutoArray&, const std::string&, const std::string&, const libmaus2::huffman::HuffmanTree*, uint64_t) [with bool radixsort = true; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’: ./libmaus2/suffixsort/BwtMergeBlockSortRequest.hpp:862:90: required from ‘libmaus2::suffixsort::BwtMergeBlockSortResult libmaus2::suffixsort::BwtMergeBlockSortRequest::sortBlock(std::ostream*) const [with input_types_type = libmaus2::suffixsort::ByteInputTypes<32>; rl_encoder = libmaus2::huffman::RLEncoderTemplate, libmaus2::bitio::FastWriteBitWriterTemplate >, 128, 255, false> > >; std::ostream = std::basic_ostream]’ 862 | ::libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTree( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 863 | UT,tmpfilenames.getHWT(),tmpfileprefix,uhnode.get(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 864 | 1/* num threads */ | ~~~~~~~~~~~~~~~~~~ 865 | ); | ~ ./libmaus2/suffixsort/BwtMergeBlockSortRequest.hpp:979:79: required from ‘std::string libmaus2::suffixsort::BwtMergeBlockSortRequest::dispatch(std::ostream*) const [with rl_encoder = libmaus2::huffman::RLEncoderTemplate, libmaus2::bitio::FastWriteBitWriterTemplate >, 128, 255, false> > >; std::string = std::__cxx11::basic_string; std::ostream = std::basic_ostream]’ 979 | result = sortBlock,rl_encoder>(logstr); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BaseBlockSortThread.hpp:128:118: required from here 128 | block->sortresult = ::libmaus2::suffixsort::BwtMergeBlockSortResult::load(block->sortreq.dispatch(logstr)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:874:90: warning: variable ‘l_numsyms0’ set but not used [-Wunused-but-set-variable=] 874 | uint64_t l_numsyms0 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:879:90: warning: variable ‘r_numsyms1’ set but not used [-Wunused-but-set-variable=] 879 | uint64_t r_numsyms1 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:755:66: warning: variable ‘numsyms1’ set but not used [-Wunused-but-set-variable=] 755 | uint64_t numsyms1 = 0; | ^~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp: In instantiation of ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRl(const std::string&, const std::string&, const std::string&, const libmaus2::huffman::HuffmanTree&, uint64_t, uint64_t) [with rl_decoder = libmaus2::huffman::RLDecoder; bool radixsort = true; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1368:123: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwt(const std::string&, const std::string&, std::string, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’ 1368 | ::libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRl( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 1369 | bwt,hwt,tmpprefix,H, | ~~~~~~~~~~~~~~~~~~~~ 1370 | utf8WaveletMaxPartMem() /* part size maximum */, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1371 | utf8WaveletMaxThreads()); | ~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:4191:65: required from ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeBwt(const libmaus2::suffixsort::bwtb3m::BwtMergeSortOptions&, std::ostream*) [with input_types_type = libmaus2::suffixsort::ByteInputTypes<32>; std::ostream = std::basic_ostream]’ 4191 | libmaus2::wavelet::RlToHwtBase::rlToHwt(options.outfn, outhwt, options.tmpfilenamebase+"_finalhwttmp",options.numthreads) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:27:122: required from ‘libmaus2::suffixsort::bwtb3m::BwtMergeSortResult computeBwtTemplate(const libmaus2::suffixsort::bwtb3m::BwtMergeSortOptions&, std::ostream*) [with unsigned int wordsize = 32; std::ostream = std::basic_ostream]’ 27 | return libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate >::computeBwt(options,logstr); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:71:32: required from here 71 | return computeBwtTemplate<32>(options,logstr); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1419:90: warning: variable ‘l_numsyms0’ set but not used [-Wunused-but-set-variable=] 1419 | uint64_t l_numsyms0 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1424:90: warning: variable ‘r_numsyms1’ set but not used [-Wunused-but-set-variable=] 1424 | uint64_t r_numsyms1 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1299:66: warning: variable ‘numsyms1’ set but not used [-Wunused-but-set-variable=] 1299 | uint64_t numsyms1 = 0; | ^~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp: In instantiation of ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRlWithTerm(const std::vector >&, const std::string&, const std::string&, const libmaus2::huffman::HuffmanTree&, uint64_t, uint64_t, uint64_t, uint64_t) [with rl_decoder = libmaus2::huffman::RLDecoder; bool radixsort = true; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1500:131: required from ‘static void libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtTerm(const std::vector >&, const std::string&, std::string, libmaus2::huffman::HuffmanTree&, uint64_t, uint64_t, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’ 1500 | ::libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRlWithTerm( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 1501 | bwt,hwt,tmpprefix,H,p0r,bwtterm, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1502 | utf8WaveletMaxPartMem() /* maximum part size */, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1503 | utf8WaveletMaxThreads() | ~~~~~~~~~~~~~~~~~~~~~~~ 1504 | ); | ~ ./libmaus2/wavelet/RlToHwtBase.hpp:1687:17: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtTerm(const std::vector >&, const std::string&, std::string, std::string, uint64_t, uint64_t, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’ 1687 | rlToHwtTerm(bwt,hwt,tmpprefix,H,bwtterm,p0r,numthreads); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/wavelet/RlToHwtTermRequest.hpp:118:67: required from ‘libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtTermRequest::dispatch() [with rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >]’ 118 | libmaus2::wavelet::RlToHwtBase::rlToHwtTerm(bwt,hwt,tmpprefix,huftreefilename,bwtterm,p0r,numthreads) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:926:102: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::ensureWaveletTreeGenerated(const libmaus2::suffixsort::BwtMergeBlockSortResult&, std::ostream*) [with input_types_type = libmaus2::suffixsort::ByteInputTypes<32>; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::ostream = std::basic_ostream]’ 926 | libmaus2::wavelet::ImpCompactHuffmanWaveletTree::unique_ptr_type ptr(ureq->dispatch()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:997:105: required from ‘static libmaus2::suffixsort::bwtb3m::GapArrayComputationResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeGapArray(libmaus2::util::TempFileNameGenerator&, const std::string&, uint64_t, uint64_t, uint64_t, uint64_t, uint64_t, const libmaus2::suffixsort::BwtMergeBlockSortResult&, const std::vector >&, libmaus2::lf::DArray*, const std::vector&, uint64_t, std::ostream*, int) [with input_types_type = libmaus2::suffixsort::ByteInputTypes<32>; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int; std::ostream = std::basic_ostream]’ 997 | ::libmaus2::wavelet::ImpCompactHuffmanWaveletTree::unique_ptr_type ICHWL(ensureWaveletTreeGenerated(blockresults,logstr)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:1161:28: required from ‘static libmaus2::suffixsort::bwtb3m::GapArrayComputationResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeGapArray(libmaus2::util::TempFileNameGenerator&, const std::string&, uint64_t, const libmaus2::suffixsort::bwtb3m::MergeStrategyMergeGapRequest&, const std::vector >&, libmaus2::lf::DArray*, uint64_t, std::ostream*, int) [with input_types_type = libmaus2::suffixsort::ByteInputTypes<32>; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int; std::ostream = std::basic_ostream]’ 1161 | return computeGapArray(gtmpgen,fn,fs,blockstart,cblocksize,nextblockstart,mergeprocrightend, | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1162 | blockresults,mergedgtname,accD,zblocks,numthreads,logstr,verbose); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:1960:61: required from ‘static void libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::mergeBlocks(libmaus2::util::TempFileNameGenerator&, libmaus2::suffixsort::bwtb3m::MergeStrategyMergeInternalBlock&, std::string, uint64_t, uint64_t, uint64_t, uint64_t, const std::map&, uint64_t, const std::string&, std::ostream*, int) [with input_types_type = libmaus2::suffixsort::ByteInputTypes<32>; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int; std::ostream = std::basic_ostream]’ 1960 | GapArrayComputationResult const GACR = computeGapArray( | ~~~~~~~~~~~~~~~^ 1961 | gtmpgen, | ~~~~~~~~ 1962 | fn,fs,*(mergereq.gaprequests[0]), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1963 | mergereq.children[1]->sortresult.getFiles().getGT(), // previous gt files | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1964 | // tmpfilenamebase + "_gparts", // new gt files | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1965 | accD.get(), | ~~~~~~~~~~~ 1966 | numthreads, | ~~~~~~~~~~~ 1967 | logstr, | ~~~~~~~ 1968 | verbose | ~~~~~~~ 1969 | ); | ~ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:4049:19: required from ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeBwt(const libmaus2::suffixsort::bwtb3m::BwtMergeSortOptions&, std::ostream*) [with input_types_type = libmaus2::suffixsort::ByteInputTypes<32>; std::ostream = std::basic_ostream]’ 4049 | mergeBlocks( | ~~~~~~~~~~~^ 4050 | *gtmpgen, | ~~~~~~~~~ 4051 | *(dynamic_cast(p)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 4052 | fn,state.getFS(), | ~~~~~~~~~~~~~~~~~ 4053 | rlencoderblocksize, | ~~~~~~~~~~~~~~~~~~~ 4054 | lfblockmult, | ~~~~~~~~~~~~ 4055 | options.numthreads, | ~~~~~~~~~~~~~~~~~~~ 4056 | chist,bwtterm, | ~~~~~~~~~~~~~~ 4057 | huftreefilename, | ~~~~~~~~~~~~~~~~ 4058 | logstr, | ~~~~~~~ 4059 | options.verbose | ~~~~~~~~~~~~~~~ 4060 | ); | ~ libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:27:122: required from ‘libmaus2::suffixsort::bwtb3m::BwtMergeSortResult computeBwtTemplate(const libmaus2::suffixsort::bwtb3m::BwtMergeSortOptions&, std::ostream*) [with unsigned int wordsize = 32; std::ostream = std::basic_ostream]’ 27 | return libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate >::computeBwt(options,logstr); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:71:32: required from here 71 | return computeBwtTemplate<32>(options,logstr); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:2048:90: warning: variable ‘l_numsyms0’ set but not used [-Wunused-but-set-variable=] 2048 | uint64_t l_numsyms0 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:2053:90: warning: variable ‘r_numsyms1’ set but not used [-Wunused-but-set-variable=] 2053 | uint64_t r_numsyms1 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1929:66: warning: variable ‘numsyms1’ set but not used [-Wunused-but-set-variable=] 1929 | uint64_t numsyms1 = 0; | ^~~~~~~~ libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp -o libmaus2/suffixsort/bwtb3m/la-BwtMergeSort.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/suffixsort/bwtb3m/la-BwtComputeSSA.lo `test -f 'libmaus2/suffixsort/bwtb3m/BwtComputeSSA.cpp' || echo './'`libmaus2/suffixsort/bwtb3m/BwtComputeSSA.cpp libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtComputeSSA.cpp -fPIC -DPIC -o libmaus2/suffixsort/bwtb3m/.libs/la-BwtComputeSSA.o libmaus2/suffixsort/bwtb3m/BwtComputeSSA.cpp: In static member function ‘static void libmaus2::suffixsort::bwtb3m::BwtComputeSSA::computeSSA(std::string, uint64_t, uint64_t, std::string, bool, uint64_t, uint64_t, uint64_t, std::ostream*, std::string, std::string)’: libmaus2/suffixsort/bwtb3m/BwtComputeSSA.cpp:576:26: warning: variable ‘bc’ set but not used [-Wunused-but-set-variable=] 576 | uint64_t bc = 0; | ^~ In file included from ./libmaus2/huffman/huffman.hpp:183, from ./libmaus2/huffman/CanonicalEncoder.hpp:26, from ./libmaus2/huffman/RLDecoder.hpp:27, from ./libmaus2/suffixsort/bwtb3m/BwtComputeSSA.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtComputeSSA.cpp:18: ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 2]’: ./libmaus2/huffman/HuffmanSorting.hpp:860:55: required from here 860 | huffman::EncodeTable enctable ( root ); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:188: ./libmaus2/huffman/HuffmanSorting.hpp: In instantiation of ‘static void libmaus2::huffman::HuffmanSorting::uncompressHuffmanCoded(uint64_t*, uint64_t, uint64_t, uint64_t, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::HuffmanTreeNode*, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::EncodeTable&) [with unsigned int lookupwords = 2; uint64_t = long long unsigned int]’: ./libmaus2/huffman/HuffmanSorting.hpp:1091:27: required from here 1091 | uncompressHuffmanCoded(acode.get(), 0 /* bit offset */, lowhalf /* syms */, firsthighsym, enctable,dectable,root.get(),dectable0,dectable1,enctable0,enctable1); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/huffman/HuffmanSorting.hpp:534:42: warning: variable ‘alldecoffset’ set but not used [-Wunused-but-set-variable=] 534 | uint64_t alldecoffset = highdecoffset; | ^~~~~~~~~~~~ ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 1]’: ./libmaus2/huffman/CanonicalEncoder.hpp:219:116: required from here 219 | return ::libmaus2::huffman::EncodeTable<1>::unique_ptr_type(new ::libmaus2::huffman::EncodeTable<1>(Ptree.get())); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/16/algorithm:63, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/lz/StreamWrapperBuffer.hpp:23, from ./libmaus2/lz/StreamWrapper.hpp:22, from ./libmaus2/aio/PosixFdInput.hpp:26, from ./libmaus2/aio/PosixFdInputWrapper.hpp:22, from ./libmaus2/aio/PosixFdInputStream.hpp:22, from ./libmaus2/aio/PosixFdInputStreamFactory.hpp:23, from ./libmaus2/aio/InputStreamFactoryContainer.hpp:23, from ./libmaus2/suffixsort/bwtb3m/BwtComputeSSA.hpp:21: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h: In function ‘constexpr void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Distance = int; _Tp = pair; _Compare = libmaus2::sorting::MergingReadBack >::HeapOrderAdapter]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:229:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 229 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtComputeSSA.cpp -o libmaus2/suffixsort/bwtb3m/la-BwtComputeSSA.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/fastx/la-FastAToCompact4BigBand.lo `test -f 'libmaus2/fastx/FastAToCompact4BigBand.cpp' || echo './'`libmaus2/fastx/FastAToCompact4BigBand.cpp libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/fastx/FastAToCompact4BigBand.cpp -fPIC -DPIC -o libmaus2/fastx/.libs/la-FastAToCompact4BigBand.o In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/util/IntervalTree.hpp:25, from ./libmaus2/fastx/FastInterval.hpp:25, from ./libmaus2/fastx/FastAReader.hpp:31, from ./libmaus2/fastx/StreamFastAReader.hpp:23, from libmaus2/fastx/FastAToCompact4BigBand.cpp:23: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/fastx/FastAToCompact4BigBand.cpp -o libmaus2/fastx/la-FastAToCompact4BigBand.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/suffixsort/bwtb3m/la-BwtMergeSortResult.lo `test -f 'libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.cpp' || echo './'`libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.cpp libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.cpp -fPIC -DPIC -o libmaus2/suffixsort/bwtb3m/.libs/la-BwtMergeSortResult.o In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/huffman/HuffmanTree.hpp:25, from ./libmaus2/wavelet/ImpCompactHuffmanWaveletTree.hpp:26, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.cpp:18: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/huffman/huffman.hpp:183, from ./libmaus2/huffman/CanonicalEncoder.hpp:26, from ./libmaus2/huffman/RLEncoder.hpp:25, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.hpp:25: ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 2]’: ./libmaus2/huffman/HuffmanSorting.hpp:860:55: required from here 860 | huffman::EncodeTable enctable ( root ); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:188: ./libmaus2/huffman/HuffmanSorting.hpp: In instantiation of ‘static void libmaus2::huffman::HuffmanSorting::uncompressHuffmanCoded(uint64_t*, uint64_t, uint64_t, uint64_t, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::HuffmanTreeNode*, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::EncodeTable&) [with unsigned int lookupwords = 2; uint64_t = long long unsigned int]’: ./libmaus2/huffman/HuffmanSorting.hpp:1091:27: required from here 1091 | uncompressHuffmanCoded(acode.get(), 0 /* bit offset */, lowhalf /* syms */, firsthighsym, enctable,dectable,root.get(),dectable0,dectable1,enctable0,enctable1); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/huffman/HuffmanSorting.hpp:534:42: warning: variable ‘alldecoffset’ set but not used [-Wunused-but-set-variable=] 534 | uint64_t alldecoffset = highdecoffset; | ^~~~~~~~~~~~ ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 1]’: ./libmaus2/huffman/CanonicalEncoder.hpp:219:116: required from here 219 | return ::libmaus2::huffman::EncodeTable<1>::unique_ptr_type(new ::libmaus2::huffman::EncodeTable<1>(Ptree.get())); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/wavelet/RlToHwtBase.hpp:30, from libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.cpp:19: ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp: In instantiation of ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRl(const std::string&, const std::string&, const std::string&, const libmaus2::huffman::HuffmanTree&, uint64_t, uint64_t) [with rl_decoder = libmaus2::huffman::RLDecoder; bool radixsort = true; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1368:123: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwt(const std::string&, const std::string&, std::string, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’ 1368 | ::libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRl( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 1369 | bwt,hwt,tmpprefix,H, | ~~~~~~~~~~~~~~~~~~~~ 1370 | utf8WaveletMaxPartMem() /* part size maximum */, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1371 | utf8WaveletMaxThreads()); | ~~~~~~~~~~~~~~~~~~~~~~~~ libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.cpp:136:60: required from here 136 | libmaus2::wavelet::RlToHwtBase::rlToHwt(bwtfn, outhwt, tmpfilenamebase+"_finalhwttmp",numthreads) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1419:90: warning: variable ‘l_numsyms0’ set but not used [-Wunused-but-set-variable=] 1419 | uint64_t l_numsyms0 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1424:90: warning: variable ‘r_numsyms1’ set but not used [-Wunused-but-set-variable=] 1424 | uint64_t r_numsyms1 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1299:66: warning: variable ‘numsyms1’ set but not used [-Wunused-but-set-variable=] 1299 | uint64_t numsyms1 = 0; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/16/map:64, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:51, from ./libmaus2/rank/ChooseCache.hpp:23, from ./libmaus2/rank/CodeBase.hpp:23, from ./libmaus2/rank/EncodeCache.hpp:23, from ./libmaus2/rank/ERankBase.hpp:24, from ./libmaus2/rank/ImpCacheLineRank.hpp:24, from ./libmaus2/wavelet/ImpCompactHuffmanWaveletTree.hpp:23: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h:3250:7: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 3250 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = const libmaus2::huffman::HuffmanTreeInnerNode*; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h:3250:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h:3250:7: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h:3250:7: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/16/map:65: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘virtual std::ostream& libmaus2::util::FileTempFileContainer::getOutputTempFile(uint64_t)’ at ./libmaus2/util/FileTempFileContainer.hpp:93:27: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair > >; _KeyOfValue = std::_Select1st > > >; _Compare = std::less; _Alloc = std::allocator > > >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h:3250:7: note: parameter passing for argument of type ‘std::_Rb_tree > >, std::_Select1st > > >, std::less, std::allocator > > > >::const_iterator’ changed in GCC 7.1 3250 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair > >; _KeyOfValue = std::_Select1st > > >; _Compare = std::less; _Alloc = std::allocator > > >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h:3250:7: note: parameter passing for argument of type ‘std::_Rb_tree > >, std::_Select1st > > >, std::less, std::allocator > > > >::const_iterator’ changed in GCC 7.1 In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr >; _Compare = std::less; _Alloc = std::allocator > > >]’, inlined from ‘virtual std::ostream& libmaus2::util::MemTempFileContainer::getOutputTempFile(uint64_t)’ at ./libmaus2/util/MemTempFileContainer.hpp:52:27: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree > >, std::_Select1st > > >, std::less, std::allocator > > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::__cxx11::basic_string; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘virtual void libmaus2::util::MemTempFileContainer::closeOutputTempFile(uint64_t)’ at ./libmaus2/util/MemTempFileContainer.hpp:59:13: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘virtual std::istream& libmaus2::util::FileTempFileContainer::openInputTempFile(uint64_t)’ at ./libmaus2/util/FileTempFileContainer.hpp:121:17: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘virtual std::istream& libmaus2::util::FileTempFileContainer::openInputTempFile(uint64_t)’ at ./libmaus2/util/FileTempFileContainer.hpp:123:26: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr >; _Compare = std::less; _Alloc = std::allocator > > >]’, inlined from ‘virtual std::istream& libmaus2::util::MemTempFileContainer::openInputTempFile(uint64_t)’ at ./libmaus2/util/MemTempFileContainer.hpp:68:18: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree > >, std::_Select1st > > >, std::less, std::allocator > > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr >; _Compare = std::less; _Alloc = std::allocator > > >]’, inlined from ‘virtual std::istream& libmaus2::util::MemTempFileContainer::openInputTempFile(uint64_t)’ at ./libmaus2/util/MemTempFileContainer.hpp:70:18: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree > >, std::_Select1st > > >, std::less, std::allocator > > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr >; _Compare = std::less; _Alloc = std::allocator > > >]’, inlined from ‘virtual std::istream& libmaus2::util::MemTempFileContainer::openInputTempFile(uint64_t)’ at ./libmaus2/util/MemTempFileContainer.hpp:72:26: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree > >, std::_Select1st > > >, std::less, std::allocator > > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr >; _Compare = std::less; _Alloc = std::allocator > > >]’, inlined from ‘virtual std::ostream& libmaus2::util::MemTempFileContainer::openOutputTempFile(uint64_t)’ at ./libmaus2/util/MemTempFileContainer.hpp:46:18: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree > >, std::_Select1st > > >, std::less, std::allocator > > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr >; _Compare = std::less; _Alloc = std::allocator > > >]’, inlined from ‘virtual std::ostream& libmaus2::util::MemTempFileContainer::openOutputTempFile(uint64_t)’ at ./libmaus2/util/MemTempFileContainer.hpp:47:27: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree > >, std::_Select1st > > >, std::less, std::allocator > > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::__cxx11::basic_string; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘virtual std::ostream& libmaus2::util::FileTempFileContainer::openOutputTempFile(uint64_t)’ at ./libmaus2/util/FileTempFileContainer.hpp:79:17: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::__cxx11::basic_string; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘virtual std::ostream& libmaus2::util::FileTempFileContainer::openOutputTempFile(uint64_t)’ at ./libmaus2/util/FileTempFileContainer.hpp:80:71: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::__cxx11::basic_string; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘virtual std::ostream& libmaus2::util::FileTempFileContainer::openOutputTempFile(uint64_t)’ at ./libmaus2/util/FileTempFileContainer.hpp:81:80: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘virtual std::ostream& libmaus2::util::FileTempFileContainer::openOutputTempFile(uint64_t)’ at ./libmaus2/util/FileTempFileContainer.hpp:81:18: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘virtual std::ostream& libmaus2::util::FileTempFileContainer::openOutputTempFile(uint64_t)’ at ./libmaus2/util/FileTempFileContainer.hpp:82:27: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘virtual std::ostream& libmaus2::util::FileTempFileContainer::getOutputTempFile(uint64_t)’ at ./libmaus2/util/FileTempFileContainer.hpp:93:27, inlined from ‘_ZN8libmaus23lcp11SuccinctLCPINS_2lf34ImpCompactHuffmanWaveletLFTemplateINS_7wavelet36ImpCompactHuffmanWaveletTreeTemplateINS_4rank16ImpCacheLineRankEEEEENS_2fm15SimpleSampledSAIS9_EENSA_10SampledISAIS9_EEE16writeSuccinctLCPIS9_SE_NS0_16WaveletLCPResultEEEvRT_RT0_RT1_RSoRNS_4util17TempFileContainerEyPSo._omp_fn.0’ at ./libmaus2/lcp/SuccinctLCP.hpp:207:58: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr >; _Compare = std::less; _Alloc = std::allocator > > >]’, inlined from ‘virtual std::ostream& libmaus2::util::MemTempFileContainer::getOutputTempFile(uint64_t)’ at ./libmaus2/util/MemTempFileContainer.hpp:52:27, inlined from ‘_ZN8libmaus23lcp11SuccinctLCPINS_2lf34ImpCompactHuffmanWaveletLFTemplateINS_7wavelet36ImpCompactHuffmanWaveletTreeTemplateINS_4rank16ImpCacheLineRankEEEEENS_2fm15SimpleSampledSAIS9_EENSA_10SampledISAIS9_EEE16writeSuccinctLCPIS9_SE_NS0_16WaveletLCPResultEEEvRT_RT0_RT1_RSoRNS_4util17TempFileContainerEyPSo._omp_fn.0’ at ./libmaus2/lcp/SuccinctLCP.hpp:207:58: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree > >, std::_Select1st > > >, std::less, std::allocator > > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘virtual std::ostream& libmaus2::util::FileTempFileContainer::getOutputTempFile(uint64_t)’ at ./libmaus2/util/FileTempFileContainer.hpp:93:27, inlined from ‘_ZN8libmaus23lcp11SuccinctLCPINS_2lf34ImpCompactHuffmanWaveletLFTemplateINS_7wavelet36ImpCompactHuffmanWaveletTreeTemplateINS_4rank16ImpCacheLineRankEEEEENS_2fm15SimpleSampledSAIS9_EENSA_10SampledISAIS9_EEE16writeSuccinctLCPIKS9_KSE_NS0_16WaveletLCPResultEEEvRT_RT0_RT1_RSoRNS_4util17TempFileContainerEyPSo._omp_fn.0’ at ./libmaus2/lcp/SuccinctLCP.hpp:207:58: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr >; _Compare = std::less; _Alloc = std::allocator > > >]’, inlined from ‘virtual std::ostream& libmaus2::util::MemTempFileContainer::getOutputTempFile(uint64_t)’ at ./libmaus2/util/MemTempFileContainer.hpp:52:27, inlined from ‘_ZN8libmaus23lcp11SuccinctLCPINS_2lf34ImpCompactHuffmanWaveletLFTemplateINS_7wavelet36ImpCompactHuffmanWaveletTreeTemplateINS_4rank16ImpCacheLineRankEEEEENS_2fm15SimpleSampledSAIS9_EENSA_10SampledISAIS9_EEE16writeSuccinctLCPIKS9_KSE_NS0_16WaveletLCPResultEEEvRT_RT0_RT1_RSoRNS_4util17TempFileContainerEyPSo._omp_fn.0’ at ./libmaus2/lcp/SuccinctLCP.hpp:207:58: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree > >, std::_Select1st > > >, std::less, std::allocator > > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = const libmaus2::huffman::HuffmanTreeInnerNode*; _Tp = long long unsigned int; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘libmaus2::wavelet::ImpExternalWaveletGeneratorHuffman::ImpExternalWaveletGeneratorHuffman(const libmaus2::huffman::HuffmanTreeNode*, libmaus2::util::TempFileContainer&)’ at ./libmaus2/wavelet/ImpExternalWaveletGeneratorHuffman.hpp:117:23: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = const libmaus2::huffman::HuffmanTreeInnerNode*; _Tp = long long unsigned int; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘void libmaus2::wavelet::ImpHuffmanWaveletTree::init()’ at ./libmaus2/wavelet/ImpHuffmanWaveletTree.hpp:168:23: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = const libmaus2::huffman::HuffmanTreeInnerNode*; _Tp = long long unsigned int; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void libmaus2::huffman::HuffmanTreeInnerNode::toDot(std::ostream&) const’ at ./libmaus2/huffman/HuffmanTreeInnerNode.hpp:193:71: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.cpp -o libmaus2/suffixsort/bwtb3m/la-BwtMergeSortResult.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/lz/la-ZlibInterface.lo `test -f 'libmaus2/lz/ZlibInterface.cpp' || echo './'`libmaus2/lz/ZlibInterface.cpp libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lz/ZlibInterface.cpp -fPIC -DPIC -o libmaus2/lz/.libs/la-ZlibInterface.o libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lz/ZlibInterface.cpp -o libmaus2/lz/la-ZlibInterface.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/suffixsort/bwtb3m/la-BwtSelectSSA.lo `test -f 'libmaus2/suffixsort/bwtb3m/BwtSelectSSA.cpp' || echo './'`libmaus2/suffixsort/bwtb3m/BwtSelectSSA.cpp libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtSelectSSA.cpp -fPIC -DPIC -o libmaus2/suffixsort/bwtb3m/.libs/la-BwtSelectSSA.o In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/util/IntervalTree.hpp:25, from ./libmaus2/aio/FileFragment.hpp:27, from ./libmaus2/sorting/PairFileSorting.hpp:27, from libmaus2/suffixsort/bwtb3m/BwtSelectSSA.cpp:21: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ libmaus2/suffixsort/bwtb3m/BwtSelectSSA.cpp: In static member function ‘static void libmaus2::suffixsort::bwtb3m::BwtSelectSSA::computeSSA(std::vector >, const std::string&, const std::string&, const std::string&, const std::vector >&, std::string, bool, uint64_t, uint64_t, uint64_t, uint64_t, std::ostream*)’: libmaus2/suffixsort/bwtb3m/BwtSelectSSA.cpp:639:26: warning: variable ‘bc’ set but not used [-Wunused-but-set-variable=] 639 | uint64_t bc = 0; | ^~ In file included from ./libmaus2/huffman/huffman.hpp:183, from ./libmaus2/huffman/CanonicalEncoder.hpp:26, from ./libmaus2/huffman/RLDecoder.hpp:27, from ./libmaus2/suffixsort/bwtb3m/BwtSelectSSA.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtSelectSSA.cpp:18: ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 2]’: ./libmaus2/huffman/HuffmanSorting.hpp:860:55: required from here 860 | huffman::EncodeTable enctable ( root ); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:188: ./libmaus2/huffman/HuffmanSorting.hpp: In instantiation of ‘static void libmaus2::huffman::HuffmanSorting::uncompressHuffmanCoded(uint64_t*, uint64_t, uint64_t, uint64_t, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::HuffmanTreeNode*, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::EncodeTable&) [with unsigned int lookupwords = 2; uint64_t = long long unsigned int]’: ./libmaus2/huffman/HuffmanSorting.hpp:1091:27: required from here 1091 | uncompressHuffmanCoded(acode.get(), 0 /* bit offset */, lowhalf /* syms */, firsthighsym, enctable,dectable,root.get(),dectable0,dectable1,enctable0,enctable1); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/huffman/HuffmanSorting.hpp:534:42: warning: variable ‘alldecoffset’ set but not used [-Wunused-but-set-variable=] 534 | uint64_t alldecoffset = highdecoffset; | ^~~~~~~~~~~~ ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 1]’: ./libmaus2/huffman/CanonicalEncoder.hpp:219:116: required from here 219 | return ::libmaus2::huffman::EncodeTable<1>::unique_ptr_type(new ::libmaus2::huffman::EncodeTable<1>(Ptree.get())); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/16/algorithm:63, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/lz/StreamWrapperBuffer.hpp:23, from ./libmaus2/lz/StreamWrapper.hpp:22, from ./libmaus2/aio/PosixFdInput.hpp:26, from ./libmaus2/aio/PosixFdInputWrapper.hpp:22, from ./libmaus2/aio/PosixFdInputStream.hpp:22, from ./libmaus2/aio/PosixFdInputStreamFactory.hpp:23, from ./libmaus2/aio/InputStreamFactoryContainer.hpp:23, from ./libmaus2/suffixsort/bwtb3m/BwtSelectSSA.hpp:21: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h: In function ‘constexpr void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Distance = int; _Tp = pair; _Compare = libmaus2::sorting::MergingReadBack >::HeapOrderAdapter]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:229:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 229 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtSelectSSA.cpp -o libmaus2/suffixsort/bwtb3m/la-BwtSelectSSA.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/aio/la-FileRemoval.lo `test -f 'libmaus2/aio/FileRemoval.cpp' || echo './'`libmaus2/aio/FileRemoval.cpp libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/aio/FileRemoval.cpp -fPIC -DPIC -o libmaus2/aio/.libs/la-FileRemoval.o libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/aio/FileRemoval.cpp -o libmaus2/aio/la-FileRemoval.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/rank/la-DNARankMEM.lo `test -f 'libmaus2/rank/DNARankMEM.cpp' || echo './'`libmaus2/rank/DNARankMEM.cpp libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/rank/DNARankMEM.cpp -fPIC -DPIC -o libmaus2/rank/.libs/la-DNARankMEM.o libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/rank/DNARankMEM.cpp -o libmaus2/rank/la-DNARankMEM.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/lcs/la-ChainAddQueueElement.lo `test -f 'libmaus2/lcs/ChainAddQueueElement.cpp' || echo './'`libmaus2/lcs/ChainAddQueueElement.cpp libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lcs/ChainAddQueueElement.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/la-ChainAddQueueElement.o libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lcs/ChainAddQueueElement.cpp -o libmaus2/lcs/la-ChainAddQueueElement.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/lcs/la-Chain.lo `test -f 'libmaus2/lcs/Chain.cpp' || echo './'`libmaus2/lcs/Chain.cpp libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lcs/Chain.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/la-Chain.o libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lcs/Chain.cpp -o libmaus2/lcs/la-Chain.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/lcs/la-ChainNode.lo `test -f 'libmaus2/lcs/ChainNode.cpp' || echo './'`libmaus2/lcs/ChainNode.cpp libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lcs/ChainNode.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/la-ChainNode.o libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lcs/ChainNode.cpp -o libmaus2/lcs/la-ChainNode.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/lcs/la-ChainNodeInfo.lo `test -f 'libmaus2/lcs/ChainNodeInfo.cpp' || echo './'`libmaus2/lcs/ChainNodeInfo.cpp libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lcs/ChainNodeInfo.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/la-ChainNodeInfo.o libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lcs/ChainNodeInfo.cpp -o libmaus2/lcs/la-ChainNodeInfo.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/lcs/la-ChainRemoveQueueElement.lo `test -f 'libmaus2/lcs/ChainRemoveQueueElement.cpp' || echo './'`libmaus2/lcs/ChainRemoveQueueElement.cpp libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lcs/ChainRemoveQueueElement.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/la-ChainRemoveQueueElement.o libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lcs/ChainRemoveQueueElement.cpp -o libmaus2/lcs/la-ChainRemoveQueueElement.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/lcs/la-ChainSplayTreeNode.lo `test -f 'libmaus2/lcs/ChainSplayTreeNode.cpp' || echo './'`libmaus2/lcs/ChainSplayTreeNode.cpp libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lcs/ChainSplayTreeNode.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/la-ChainSplayTreeNode.o libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lcs/ChainSplayTreeNode.cpp -o libmaus2/lcs/la-ChainSplayTreeNode.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/timing/la-RealTimeClock.lo `test -f 'libmaus2/timing/RealTimeClock.cpp' || echo './'`libmaus2/timing/RealTimeClock.cpp libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/timing/RealTimeClock.cpp -fPIC -DPIC -o libmaus2/timing/.libs/la-RealTimeClock.o libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/timing/RealTimeClock.cpp -o libmaus2/timing/la-RealTimeClock.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/aio/la-PosixFdOutputStreamFactory.lo `test -f 'libmaus2/aio/PosixFdOutputStreamFactory.cpp' || echo './'`libmaus2/aio/PosixFdOutputStreamFactory.cpp libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/aio/PosixFdOutputStreamFactory.cpp -fPIC -DPIC -o libmaus2/aio/.libs/la-PosixFdOutputStreamFactory.o libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/aio/PosixFdOutputStreamFactory.cpp -o libmaus2/aio/la-PosixFdOutputStreamFactory.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/dazzler/align/la-OverlapHeader.lo `test -f 'libmaus2/dazzler/align/OverlapHeader.cpp' || echo './'`libmaus2/dazzler/align/OverlapHeader.cpp libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/dazzler/align/OverlapHeader.cpp -fPIC -DPIC -o libmaus2/dazzler/align/.libs/la-OverlapHeader.o libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/dazzler/align/OverlapHeader.cpp -o libmaus2/dazzler/align/la-OverlapHeader.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/bambam/la-BamAlignment.lo `test -f 'libmaus2/bambam/BamAlignment.cpp' || echo './'`libmaus2/bambam/BamAlignment.cpp libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/BamAlignment.cpp -fPIC -DPIC -o libmaus2/bambam/.libs/la-BamAlignment.o In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/bambam/BamAuxFilterVector.hpp:22, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:27, from ./libmaus2/bambam/BamAlignment.hpp:24, from libmaus2/bambam/BamAlignment.cpp:18: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/bambam/CigarStringParser.hpp:25, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ libmaus2/bambam/BamAlignment.cpp: In member function ‘std::string libmaus2::bambam::BamAlignment::getReferenceRegionViaMd() const’: libmaus2/bambam/BamAlignment.cpp:98:17: warning: variable ‘refpos’ set but not used [-Wunused-but-set-variable=] 98 | int64_t refpos = 0; | ^~~~~~ libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/BamAlignment.cpp -o libmaus2/bambam/la-BamAlignment.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/suffixsort/bwtb3m/la-MergeStrategyMergeInput.lo `test -f 'libmaus2/suffixsort/bwtb3m/MergeStrategyMergeInput.cpp' || echo './'`libmaus2/suffixsort/bwtb3m/MergeStrategyMergeInput.cpp libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/MergeStrategyMergeInput.cpp -fPIC -DPIC -o libmaus2/suffixsort/bwtb3m/.libs/la-MergeStrategyMergeInput.o In file included from ./libmaus2/suffixsort/BwtMergeTempFileNameSet.hpp:27, from ./libmaus2/suffixsort/BwtMergeBlockSortResult.hpp:22, from ./libmaus2/suffixsort/bwtb3m/MergeStrategyBlock.hpp:23, from ./libmaus2/suffixsort/bwtb3m/MergeStrategyMergeInput.hpp:21, from libmaus2/suffixsort/bwtb3m/MergeStrategyMergeInput.cpp:18: ./libmaus2/util/DirectoryStructure.hpp: In member function ‘std::string libmaus2::util::DirectoryStructure::printGenerate(std::ostream&, std::string, uint64_t) const’: ./libmaus2/util/DirectoryStructure.hpp:207:58: warning: variable ‘batchcnt’ set but not used [-Wunused-but-set-variable=] 207 | uint64_t batchcnt = 0; | ^~~~~~~~ ./libmaus2/util/DirectoryStructure.hpp: In member function ‘std::string libmaus2::util::DirectoryStructure::printRemove(std::ostream&, std::string, uint64_t) const’: ./libmaus2/util/DirectoryStructure.hpp:282:58: warning: variable ‘batchcnt’ set but not used [-Wunused-but-set-variable=] 282 | uint64_t batchcnt = 0; | ^~~~~~~~ In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/huffman/HuffmanTree.hpp:25, from ./libmaus2/suffixsort/BwtMergeBlockSortRequest.hpp:23, from ./libmaus2/suffixsort/bwtb3m/MergeStrategyBaseBlock.hpp:22, from libmaus2/suffixsort/bwtb3m/MergeStrategyMergeInput.cpp:22: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/huffman/huffman.hpp:183, from ./libmaus2/suffixsort/BwtMergeBlockSortRequest.hpp:24: ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 2]’: ./libmaus2/huffman/HuffmanSorting.hpp:860:55: required from here 860 | huffman::EncodeTable enctable ( root ); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:188: ./libmaus2/huffman/HuffmanSorting.hpp: In instantiation of ‘static void libmaus2::huffman::HuffmanSorting::uncompressHuffmanCoded(uint64_t*, uint64_t, uint64_t, uint64_t, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::HuffmanTreeNode*, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::EncodeTable&) [with unsigned int lookupwords = 2; uint64_t = long long unsigned int]’: ./libmaus2/huffman/HuffmanSorting.hpp:1091:27: required from here 1091 | uncompressHuffmanCoded(acode.get(), 0 /* bit offset */, lowhalf /* syms */, firsthighsym, enctable,dectable,root.get(),dectable0,dectable1,enctable0,enctable1); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/huffman/HuffmanSorting.hpp:534:42: warning: variable ‘alldecoffset’ set but not used [-Wunused-but-set-variable=] 534 | uint64_t alldecoffset = highdecoffset; | ^~~~~~~~~~~~ ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 1]’: ./libmaus2/huffman/CanonicalEncoder.hpp:219:116: required from here 219 | return ::libmaus2::huffman::EncodeTable<1>::unique_ptr_type(new ::libmaus2::huffman::EncodeTable<1>(Ptree.get())); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/16/map:64, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:51, from ./libmaus2/util/StringSerialisation.hpp:30, from ./libmaus2/suffixsort/BwtMergeTempFileNameSet.hpp:26: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h:3250:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 3250 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/16/map:65: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = libmaus2::suffixsort::bwtb3m::MergeStrategyBlock*; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void libmaus2::suffixsort::bwtb3m::MergeStrategyBaseBlock::fillNodeMap(std::map&)’ at ./libmaus2/suffixsort/bwtb3m/MergeStrategyBaseBlock.hpp:198:14: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = libmaus2::suffixsort::bwtb3m::MergeStrategyBlock*; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void libmaus2::suffixsort::bwtb3m::MergeStrategyMergeBlock::fillNodeMap(std::map&)’ at ./libmaus2/suffixsort/bwtb3m/MergeStrategyMergeBlock.hpp:55:14: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = libmaus2::suffixsort::bwtb3m::MergeStrategyBlock*; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void libmaus2::suffixsort::bwtb3m::MergeStrategyBaseBlock::fillNodeMap(std::map&)’ at ./libmaus2/suffixsort/bwtb3m/MergeStrategyBaseBlock.hpp:198:14, inlined from ‘virtual void libmaus2::suffixsort::bwtb3m::MergeStrategyMergeBlock::fillNodeMap(std::map&)’ at ./libmaus2/suffixsort/bwtb3m/MergeStrategyMergeBlock.hpp:58:21: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/MergeStrategyMergeInput.cpp -o libmaus2/suffixsort/bwtb3m/la-MergeStrategyMergeInput.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/aio/la-InputOutputStreamInstance.lo `test -f 'libmaus2/aio/InputOutputStreamInstance.cpp' || echo './'`libmaus2/aio/InputOutputStreamInstance.cpp libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/aio/InputOutputStreamInstance.cpp -fPIC -DPIC -o libmaus2/aio/.libs/la-InputOutputStreamInstance.o libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/aio/InputOutputStreamInstance.cpp -o libmaus2/aio/la-InputOutputStreamInstance.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/dazzler/align/la-OverlapInfo.lo `test -f 'libmaus2/dazzler/align/OverlapInfo.cpp' || echo './'`libmaus2/dazzler/align/OverlapInfo.cpp libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/dazzler/align/OverlapInfo.cpp -fPIC -DPIC -o libmaus2/dazzler/align/.libs/la-OverlapInfo.o libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/dazzler/align/OverlapInfo.cpp -o libmaus2/dazzler/align/la-OverlapInfo.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/dazzler/align/la-OverlapDataInterface.lo `test -f 'libmaus2/dazzler/align/OverlapDataInterface.cpp' || echo './'`libmaus2/dazzler/align/OverlapDataInterface.cpp libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/dazzler/align/OverlapDataInterface.cpp -fPIC -DPIC -o libmaus2/dazzler/align/.libs/la-OverlapDataInterface.o In file included from ./libmaus2/lcs/Aligner.hpp:21, from ./libmaus2/dazzler/align/Overlap.hpp:22, from ./libmaus2/dazzler/align/OverlapData.hpp:23, from ./libmaus2/dazzler/align/OverlapDataInterface.hpp:21, from libmaus2/dazzler/align/OverlapDataInterface.cpp:18: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/dazzler/align/OverlapDataInterface.cpp -o libmaus2/dazzler/align/la-OverlapDataInterface.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/util/la-PathTools.lo `test -f 'libmaus2/util/PathTools.cpp' || echo './'`libmaus2/util/PathTools.cpp libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/util/PathTools.cpp -fPIC -DPIC -o libmaus2/util/.libs/la-PathTools.o libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/util/PathTools.cpp -o libmaus2/util/la-PathTools.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 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-D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/gtf/ExonInfo.cpp -fPIC -DPIC -o libmaus2/gtf/.libs/la-ExonInfo.o libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 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'./'`libmaus2/gtf/ExonInterval.cpp libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/gtf/ExonInterval.cpp -fPIC -DPIC -o libmaus2/gtf/.libs/la-ExonInterval.o libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/gtf/ExonInterval.cpp -o libmaus2/gtf/la-ExonInterval.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/gtf/la-ExonSubInfo.lo `test -f 'libmaus2/gtf/ExonSubInfo.cpp' || echo './'`libmaus2/gtf/ExonSubInfo.cpp libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/gtf/ExonSubInfo.cpp -fPIC -DPIC -o libmaus2/gtf/.libs/la-ExonSubInfo.o libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/gtf/ExonSubInfo.cpp -o libmaus2/gtf/la-ExonSubInfo.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/protein/la-Blosum62.lo `test -f 'libmaus2/protein/Blosum62.cpp' || echo './'`libmaus2/protein/Blosum62.cpp libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/protein/Blosum62.cpp -fPIC -DPIC -o libmaus2/protein/.libs/la-Blosum62.o libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/protein/Blosum62.cpp -o libmaus2/protein/la-Blosum62.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/protein/la-CodonMapper.lo `test -f 'libmaus2/protein/CodonMapper.cpp' || echo './'`libmaus2/protein/CodonMapper.cpp libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/protein/CodonMapper.cpp -fPIC -DPIC -o libmaus2/protein/.libs/la-CodonMapper.o libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/protein/CodonMapper.cpp -o libmaus2/protein/la-CodonMapper.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/bambam/la-ChecksumsFactory.lo `test -f 'libmaus2/bambam/ChecksumsFactory.cpp' || echo './'`libmaus2/bambam/ChecksumsFactory.cpp libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/ChecksumsFactory.cpp -fPIC -DPIC -o libmaus2/bambam/.libs/la-ChecksumsFactory.o In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/bambam/BamAuxFilterVector.hpp:22, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:27, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/ChecksumsInterface.hpp:22, from ./libmaus2/bambam/ChecksumsFactory.hpp:22, from libmaus2/bambam/ChecksumsFactory.cpp:20: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/bambam/CigarStringParser.hpp:25, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/ChecksumsFactory.cpp -o libmaus2/bambam/la-ChecksumsFactory.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/vcf/la-VCFSortEntry.lo `test -f 'libmaus2/vcf/VCFSortEntry.cpp' || echo './'`libmaus2/vcf/VCFSortEntry.cpp libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/vcf/VCFSortEntry.cpp -fPIC -DPIC -o libmaus2/vcf/.libs/la-VCFSortEntry.o libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/vcf/VCFSortEntry.cpp -o libmaus2/vcf/la-VCFSortEntry.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/network/la-CurlInitObject.lo `test -f 'libmaus2/network/CurlInitObject.cpp' || echo './'`libmaus2/network/CurlInitObject.cpp libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/network/CurlInitObject.cpp -fPIC -DPIC -o libmaus2/network/.libs/la-CurlInitObject.o libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 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-ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/network/CurlInputStreamBuffer.cpp -fPIC -DPIC -o libmaus2/network/.libs/la-CurlInputStreamBuffer.o libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/network/CurlInputStreamBuffer.cpp -o libmaus2/network/la-CurlInputStreamBuffer.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/network/la-CurlInputStream.lo `test -f 'libmaus2/network/CurlInputStream.cpp' || echo './'`libmaus2/network/CurlInputStream.cpp libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/network/CurlInputStream.cpp -fPIC -DPIC -o libmaus2/network/.libs/la-CurlInputStream.o libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/network/CurlInputStream.cpp -o libmaus2/network/la-CurlInputStream.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/network/la-GetHostName.lo `test -f 'libmaus2/network/GetHostName.cpp' || echo './'`libmaus2/network/GetHostName.cpp libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/network/GetHostName.cpp -fPIC -DPIC -o libmaus2/network/.libs/la-GetHostName.o libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/network/GetHostName.cpp -o libmaus2/network/la-GetHostName.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/aio/la-SecrecyInputStreamFactory.lo `test -f 'libmaus2/aio/SecrecyInputStreamFactory.cpp' || echo './'`libmaus2/aio/SecrecyInputStreamFactory.cpp libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/aio/SecrecyInputStreamFactory.cpp -fPIC -DPIC -o libmaus2/aio/.libs/la-SecrecyInputStreamFactory.o libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/aio/SecrecyInputStreamFactory.cpp -o libmaus2/aio/la-SecrecyInputStreamFactory.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/aio/la-SecrecyOutputStreamFactory.lo `test -f 'libmaus2/aio/SecrecyOutputStreamFactory.cpp' || echo './'`libmaus2/aio/SecrecyOutputStreamFactory.cpp libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/aio/SecrecyOutputStreamFactory.cpp -fPIC -DPIC -o libmaus2/aio/.libs/la-SecrecyOutputStreamFactory.o libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/aio/SecrecyOutputStreamFactory.cpp -o libmaus2/aio/la-SecrecyOutputStreamFactory.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=compile arm-linux-gnueabihf-gcc -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/bambam/la-Scram.lo `test -f 'libmaus2/bambam/Scram.c' || echo './'`libmaus2/bambam/Scram.c libtool: compile: arm-linux-gnueabihf-gcc -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/Scram.c -fPIC -DPIC -o libmaus2/bambam/.libs/la-Scram.o libtool: compile: arm-linux-gnueabihf-gcc -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/Scram.c -o libmaus2/bambam/la-Scram.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/bambam/parallel/la-ScramCramEncoding.lo `test -f 'libmaus2/bambam/parallel/ScramCramEncoding.cpp' || echo './'`libmaus2/bambam/parallel/ScramCramEncoding.cpp libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/parallel/ScramCramEncoding.cpp -fPIC -DPIC -o libmaus2/bambam/parallel/.libs/la-ScramCramEncoding.o libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/parallel/ScramCramEncoding.cpp -o libmaus2/bambam/parallel/la-ScramCramEncoding.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/parallel/threadpool/bgzf/la-BgzfDecompressContext.lo `test -f 'libmaus2/parallel/threadpool/bgzf/BgzfDecompressContext.cpp' || echo './'`libmaus2/parallel/threadpool/bgzf/BgzfDecompressContext.cpp libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/parallel/threadpool/bgzf/BgzfDecompressContext.cpp -fPIC -DPIC -o libmaus2/parallel/threadpool/bgzf/.libs/la-BgzfDecompressContext.o libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/parallel/threadpool/bgzf/BgzfDecompressContext.cpp -o libmaus2/parallel/threadpool/bgzf/la-BgzfDecompressContext.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/parallel/threadpool/bgzf/la-BgzfCompressContext.lo `test -f 'libmaus2/parallel/threadpool/bgzf/BgzfCompressContext.cpp' || echo './'`libmaus2/parallel/threadpool/bgzf/BgzfCompressContext.cpp libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/parallel/threadpool/bgzf/BgzfCompressContext.cpp -fPIC -DPIC -o libmaus2/parallel/threadpool/bgzf/.libs/la-BgzfCompressContext.o libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/parallel/threadpool/bgzf/BgzfCompressContext.cpp -o libmaus2/parallel/threadpool/bgzf/la-BgzfCompressContext.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/suffixsort/bwtb3m/la-BwtMergeIsaBase.lo `test -f 'libmaus2/suffixsort/bwtb3m/BwtMergeIsaBase.cpp' || echo './'`libmaus2/suffixsort/bwtb3m/BwtMergeIsaBase.cpp libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtMergeIsaBase.cpp -fPIC -DPIC -o libmaus2/suffixsort/bwtb3m/.libs/la-BwtMergeIsaBase.o libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtMergeIsaBase.cpp -o libmaus2/suffixsort/bwtb3m/la-BwtMergeIsaBase.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/suffixsort/bwtb3m/la-BwtMergeIsaParallelBase.lo `test -f 'libmaus2/suffixsort/bwtb3m/BwtMergeIsaParallelBase.cpp' || echo './'`libmaus2/suffixsort/bwtb3m/BwtMergeIsaParallelBase.cpp libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtMergeIsaParallelBase.cpp -fPIC -DPIC -o libmaus2/suffixsort/bwtb3m/.libs/la-BwtMergeIsaParallelBase.o In file included from ./libmaus2/suffixsort/bwtb3m/GapArrayWrapper.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeIsaParallelBase.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeIsaParallelBase.cpp:19: ./libmaus2/util/AtomicArray.hpp:45:43: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 45 | AtomicArray(AtomicArray const & O) = delete; | ^~~~~~~~~~~~~~~~~ ./libmaus2/util/AtomicArray.hpp:45:43: note: remove the ‘< >’ In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/util/IntervalTree.hpp:25, from ./libmaus2/huffman/GapDecoder.hpp:26, from ./libmaus2/huffman/GapEncoder.hpp:25, from ./libmaus2/suffixsort/GapArrayByte.hpp:25, from ./libmaus2/suffixsort/bwtb3m/BwtMergeIsaParallelBase.hpp:24: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ ./libmaus2/suffixsort/GapArrayByte.hpp: In member function ‘void libmaus2::suffixsort::GapArrayByte::flush()’: ./libmaus2/suffixsort/GapArrayByte.hpp:134:42: warning: variable ‘overflowcnt’ set but not used [-Wunused-but-set-variable=] 134 | uint64_t overflowcnt = 0; | ^~~~~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:183, from ./libmaus2/huffman/CanonicalEncoder.hpp:26, from ./libmaus2/huffman/GapEncoder.hpp:23: ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 2]’: ./libmaus2/huffman/HuffmanSorting.hpp:860:55: required from here 860 | huffman::EncodeTable enctable ( root ); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:188: ./libmaus2/huffman/HuffmanSorting.hpp: In instantiation of ‘static void libmaus2::huffman::HuffmanSorting::uncompressHuffmanCoded(uint64_t*, uint64_t, uint64_t, uint64_t, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::HuffmanTreeNode*, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::EncodeTable&) [with unsigned int lookupwords = 2; uint64_t = long long unsigned int]’: ./libmaus2/huffman/HuffmanSorting.hpp:1091:27: required from here 1091 | uncompressHuffmanCoded(acode.get(), 0 /* bit offset */, lowhalf /* syms */, firsthighsym, enctable,dectable,root.get(),dectable0,dectable1,enctable0,enctable1); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/huffman/HuffmanSorting.hpp:534:42: warning: variable ‘alldecoffset’ set but not used [-Wunused-but-set-variable=] 534 | uint64_t alldecoffset = highdecoffset; | ^~~~~~~~~~~~ ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 1]’: ./libmaus2/huffman/CanonicalEncoder.hpp:219:116: required from here 219 | return ::libmaus2::huffman::EncodeTable<1>::unique_ptr_type(new ::libmaus2::huffman::EncodeTable<1>(Ptree.get())); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtMergeIsaParallelBase.cpp -o libmaus2/suffixsort/bwtb3m/la-BwtMergeIsaParallelBase.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/suffixsort/bwtb3m/la-BwtMergeParallelGapFragMerge.lo `test -f 'libmaus2/suffixsort/bwtb3m/BwtMergeParallelGapFragMerge.cpp' || echo './'`libmaus2/suffixsort/bwtb3m/BwtMergeParallelGapFragMerge.cpp libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtMergeParallelGapFragMerge.cpp -fPIC -DPIC -o libmaus2/suffixsort/bwtb3m/.libs/la-BwtMergeParallelGapFragMerge.o In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/util/IntervalTree.hpp:25, from ./libmaus2/gamma/GammaRLDecoder.hpp:28, from ./libmaus2/gamma/GammaRLEncoder.hpp:29, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:24, from ./libmaus2/suffixsort/bwtb3m/BwtMergeParallelGapFragMerge.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeParallelGapFragMerge.cpp:19: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/huffman/huffman.hpp:183, from ./libmaus2/huffman/CanonicalEncoder.hpp:26, from ./libmaus2/huffman/RLEncoder.hpp:25, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22: ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 2]’: ./libmaus2/huffman/HuffmanSorting.hpp:860:55: required from here 860 | huffman::EncodeTable enctable ( root ); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:188: ./libmaus2/huffman/HuffmanSorting.hpp: In instantiation of ‘static void libmaus2::huffman::HuffmanSorting::uncompressHuffmanCoded(uint64_t*, uint64_t, uint64_t, uint64_t, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::HuffmanTreeNode*, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::EncodeTable&) [with unsigned int lookupwords = 2; uint64_t = long long unsigned int]’: ./libmaus2/huffman/HuffmanSorting.hpp:1091:27: required from here 1091 | uncompressHuffmanCoded(acode.get(), 0 /* bit offset */, lowhalf /* syms */, firsthighsym, enctable,dectable,root.get(),dectable0,dectable1,enctable0,enctable1); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/huffman/HuffmanSorting.hpp:534:42: warning: variable ‘alldecoffset’ set but not used [-Wunused-but-set-variable=] 534 | uint64_t alldecoffset = highdecoffset; | ^~~~~~~~~~~~ ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 1]’: ./libmaus2/huffman/CanonicalEncoder.hpp:219:116: required from here 219 | return ::libmaus2::huffman::EncodeTable<1>::unique_ptr_type(new ::libmaus2::huffman::EncodeTable<1>(Ptree.get())); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtMergeParallelGapFragMerge.cpp -o libmaus2/suffixsort/bwtb3m/la-BwtMergeParallelGapFragMerge.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplateByte32.lo `test -f 'libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateByte32.cpp' || echo './'`libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateByte32.cpp libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateByte32.cpp -fPIC -DPIC -o libmaus2/suffixsort/bwtb3m/.libs/la-BwtMergeSortTemplateByte32.o In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/util/IntervalTree.hpp:25, from ./libmaus2/gamma/GammaRLDecoder.hpp:28, from ./libmaus2/gamma/GammaRLEncoder.hpp:29, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:24, from ./libmaus2/suffixsort/bwtb3m/BwtMergeComputeSampledSA.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateByte32.cpp:20: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/suffixsort/bwtb3m/GapArrayWrapper.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeIsaParallelBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:24: ./libmaus2/util/AtomicArray.hpp: At global scope: ./libmaus2/util/AtomicArray.hpp:45:43: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 45 | AtomicArray(AtomicArray const & O) = delete; | ^~~~~~~~~~~~~~~~~ ./libmaus2/util/AtomicArray.hpp:45:43: note: remove the ‘< >’ In file included from ./libmaus2/suffixsort/bwtb3m/BwtMergeIsaParallelBase.hpp:24: ./libmaus2/suffixsort/GapArrayByte.hpp: In member function ‘void libmaus2::suffixsort::GapArrayByte::flush()’: ./libmaus2/suffixsort/GapArrayByte.hpp:134:42: warning: variable ‘overflowcnt’ set but not used [-Wunused-but-set-variable=] 134 | uint64_t overflowcnt = 0; | ^~~~~~~~~~~ In file included from ./libmaus2/suffixsort/BwtMergeTempFileNameSet.hpp:27, from ./libmaus2/suffixsort/BwtMergeBlockSortResult.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:33: ./libmaus2/util/DirectoryStructure.hpp: In member function ‘std::string libmaus2::util::DirectoryStructure::printGenerate(std::ostream&, std::string, uint64_t) const’: ./libmaus2/util/DirectoryStructure.hpp:207:58: warning: variable ‘batchcnt’ set but not used [-Wunused-but-set-variable=] 207 | uint64_t batchcnt = 0; | ^~~~~~~~ ./libmaus2/util/DirectoryStructure.hpp: In member function ‘std::string libmaus2::util::DirectoryStructure::printRemove(std::ostream&, std::string, uint64_t) const’: ./libmaus2/util/DirectoryStructure.hpp:282:58: warning: variable ‘batchcnt’ set but not used [-Wunused-but-set-variable=] 282 | uint64_t batchcnt = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:183, from ./libmaus2/huffman/CanonicalEncoder.hpp:26, from ./libmaus2/huffman/RLEncoder.hpp:25, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22: ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 2]’: ./libmaus2/huffman/HuffmanSorting.hpp:860:55: required from here 860 | huffman::EncodeTable enctable ( root ); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:188: ./libmaus2/huffman/HuffmanSorting.hpp: In instantiation of ‘static void libmaus2::huffman::HuffmanSorting::uncompressHuffmanCoded(uint64_t*, uint64_t, uint64_t, uint64_t, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::HuffmanTreeNode*, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::EncodeTable&) [with unsigned int lookupwords = 2; uint64_t = long long unsigned int]’: ./libmaus2/huffman/HuffmanSorting.hpp:1091:27: required from here 1091 | uncompressHuffmanCoded(acode.get(), 0 /* bit offset */, lowhalf /* syms */, firsthighsym, enctable,dectable,root.get(),dectable0,dectable1,enctable0,enctable1); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/huffman/HuffmanSorting.hpp:534:42: warning: variable ‘alldecoffset’ set but not used [-Wunused-but-set-variable=] 534 | uint64_t alldecoffset = highdecoffset; | ^~~~~~~~~~~~ ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 1]’: ./libmaus2/huffman/CanonicalEncoder.hpp:219:116: required from here 219 | return ::libmaus2::huffman::EncodeTable<1>::unique_ptr_type(new ::libmaus2::huffman::EncodeTable<1>(Ptree.get())); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/wavelet/RlToHwtBase.hpp:30, from ./libmaus2/wavelet/RlToHwtTermRequest.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:44: ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp: In instantiation of ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTree(libmaus2::autoarray::AutoArray&, const std::string&, const std::string&, const libmaus2::huffman::HuffmanTree*, uint64_t) [with bool radixsort = true; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’: ./libmaus2/suffixsort/BwtMergeBlockSortRequest.hpp:862:90: required from ‘libmaus2::suffixsort::BwtMergeBlockSortResult libmaus2::suffixsort::BwtMergeBlockSortRequest::sortBlock(std::ostream*) const [with input_types_type = libmaus2::suffixsort::ByteInputTypes<32>; rl_encoder = libmaus2::huffman::RLEncoderTemplate, libmaus2::bitio::FastWriteBitWriterTemplate >, 128, 255, false> > >; std::ostream = std::basic_ostream]’ 862 | ::libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTree( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 863 | UT,tmpfilenames.getHWT(),tmpfileprefix,uhnode.get(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 864 | 1/* num threads */ | ~~~~~~~~~~~~~~~~~~ 865 | ); | ~ ./libmaus2/suffixsort/BwtMergeBlockSortRequest.hpp:979:79: required from ‘std::string libmaus2::suffixsort::BwtMergeBlockSortRequest::dispatch(std::ostream*) const [with rl_encoder = libmaus2::huffman::RLEncoderTemplate, libmaus2::bitio::FastWriteBitWriterTemplate >, 128, 255, false> > >; std::string = std::__cxx11::basic_string; std::ostream = std::basic_ostream]’ 979 | result = sortBlock,rl_encoder>(logstr); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BaseBlockSortThread.hpp:128:118: required from here 128 | block->sortresult = ::libmaus2::suffixsort::BwtMergeBlockSortResult::load(block->sortreq.dispatch(logstr)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:874:90: warning: variable ‘l_numsyms0’ set but not used [-Wunused-but-set-variable=] 874 | uint64_t l_numsyms0 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:879:90: warning: variable ‘r_numsyms1’ set but not used [-Wunused-but-set-variable=] 879 | uint64_t r_numsyms1 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:755:66: warning: variable ‘numsyms1’ set but not used [-Wunused-but-set-variable=] 755 | uint64_t numsyms1 = 0; | ^~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp: In instantiation of ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRl(const std::string&, const std::string&, const std::string&, const libmaus2::huffman::HuffmanTree&, uint64_t, uint64_t) [with rl_decoder = libmaus2::huffman::RLDecoder; bool radixsort = true; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1368:123: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwt(const std::string&, const std::string&, std::string, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’ 1368 | ::libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRl( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 1369 | bwt,hwt,tmpprefix,H, | ~~~~~~~~~~~~~~~~~~~~ 1370 | utf8WaveletMaxPartMem() /* part size maximum */, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1371 | utf8WaveletMaxThreads()); | ~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:4191:65: required from ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeBwt(const libmaus2::suffixsort::bwtb3m::BwtMergeSortOptions&, std::ostream*) [with input_types_type = libmaus2::suffixsort::ByteInputTypes<32>; std::ostream = std::basic_ostream]’ 4191 | libmaus2::wavelet::RlToHwtBase::rlToHwt(options.outfn, outhwt, options.tmpfilenamebase+"_finalhwttmp",options.numthreads) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateByte32.cpp:22:47: required from here 22 | template struct libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate< libmaus2::suffixsort::ByteInputTypes<32> >; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1419:90: warning: variable ‘l_numsyms0’ set but not used [-Wunused-but-set-variable=] 1419 | uint64_t l_numsyms0 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1424:90: warning: variable ‘r_numsyms1’ set but not used [-Wunused-but-set-variable=] 1424 | uint64_t r_numsyms1 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1299:66: warning: variable ‘numsyms1’ set but not used [-Wunused-but-set-variable=] 1299 | uint64_t numsyms1 = 0; | ^~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp: In instantiation of ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRlWithTerm(const std::vector >&, const std::string&, const std::string&, const libmaus2::huffman::HuffmanTree&, uint64_t, uint64_t, uint64_t, uint64_t) [with rl_decoder = libmaus2::huffman::RLDecoder; bool radixsort = true; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1500:131: required from ‘static void libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtTerm(const std::vector >&, const std::string&, std::string, libmaus2::huffman::HuffmanTree&, uint64_t, uint64_t, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’ 1500 | ::libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRlWithTerm( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 1501 | bwt,hwt,tmpprefix,H,p0r,bwtterm, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1502 | utf8WaveletMaxPartMem() /* maximum part size */, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1503 | utf8WaveletMaxThreads() | ~~~~~~~~~~~~~~~~~~~~~~~ 1504 | ); | ~ ./libmaus2/wavelet/RlToHwtBase.hpp:1687:17: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtTerm(const std::vector >&, const std::string&, std::string, std::string, uint64_t, uint64_t, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’ 1687 | rlToHwtTerm(bwt,hwt,tmpprefix,H,bwtterm,p0r,numthreads); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/wavelet/RlToHwtTermRequest.hpp:118:67: required from ‘libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtTermRequest::dispatch() [with rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >]’ 118 | libmaus2::wavelet::RlToHwtBase::rlToHwtTerm(bwt,hwt,tmpprefix,huftreefilename,bwtterm,p0r,numthreads) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:926:102: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::ensureWaveletTreeGenerated(const libmaus2::suffixsort::BwtMergeBlockSortResult&, std::ostream*) [with input_types_type = libmaus2::suffixsort::ByteInputTypes<32>; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::ostream = std::basic_ostream]’ 926 | libmaus2::wavelet::ImpCompactHuffmanWaveletTree::unique_ptr_type ptr(ureq->dispatch()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~ libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateByte32.cpp:22:47: required from here 22 | template struct libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate< libmaus2::suffixsort::ByteInputTypes<32> >; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:2048:90: warning: variable ‘l_numsyms0’ set but not used [-Wunused-but-set-variable=] 2048 | uint64_t l_numsyms0 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:2053:90: warning: variable ‘r_numsyms1’ set but not used [-Wunused-but-set-variable=] 2053 | uint64_t r_numsyms1 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1929:66: warning: variable ‘numsyms1’ set but not used [-Wunused-but-set-variable=] 1929 | uint64_t numsyms1 = 0; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/16/map:64, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:51, from ./libmaus2/math/numbits.hpp:24, from ./libmaus2/huffman/IndexWriter.hpp:24, from ./libmaus2/huffman/RLEncoder.hpp:22: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h: In function ‘std::pair::rebind<_Val>::other>::pointer>::_Base_ptr, typename std::__rb_tree::_Node_traits<_Val, typename __gnu_cxx::__alloc_traits::rebind<_Val>::other>::pointer>::_Base_ptr> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(const_iterator, const key_type&) [with _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h:2952:5: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 2952 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h:3250:7: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 3250 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair::SparseGammaGapMergeInfo> >; _KeyOfValue = std::_Select1st::SparseGammaGapMergeInfo> > >; _Compare = std::less; _Alloc = std::allocator::SparseGammaGapMergeInfo> > >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h:3250:7: note: parameter passing for argument of type ‘std::_Rb_tree::SparseGammaGapMergeInfo> >, std::_Select1st::SparseGammaGapMergeInfo> > >, std::less, std::allocator::SparseGammaGapMergeInfo> > > >::const_iterator’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h:3250:7: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h:3250:7: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/16/map:65: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘virtual std::ostream& libmaus2::util::FileTempFileContainer::getOutputTempFile(uint64_t)’ at ./libmaus2/util/FileTempFileContainer.hpp:93:27: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘virtual std::istream& libmaus2::util::FileTempFileContainer::openInputTempFile(uint64_t)’ at ./libmaus2/util/FileTempFileContainer.hpp:121:17: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘virtual std::istream& libmaus2::util::FileTempFileContainer::openInputTempFile(uint64_t)’ at ./libmaus2/util/FileTempFileContainer.hpp:123:26: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/16/algorithm:63, from ./libmaus2/autoarray/AutoArray.hpp:35: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h: In function ‘constexpr void std::__pop_heap(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Compare = less]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:257:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 257 | __pop_heap(_RandomAccessIterator __first, _RandomAccessIterator __last, | ^~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:257:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:257:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::__cxx11::basic_string; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘virtual std::ostream& libmaus2::util::FileTempFileContainer::openOutputTempFile(uint64_t)’ at ./libmaus2/util/FileTempFileContainer.hpp:79:17: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::__cxx11::basic_string; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘virtual std::ostream& libmaus2::util::FileTempFileContainer::openOutputTempFile(uint64_t)’ at ./libmaus2/util/FileTempFileContainer.hpp:80:71: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::__cxx11::basic_string; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘virtual std::ostream& libmaus2::util::FileTempFileContainer::openOutputTempFile(uint64_t)’ at ./libmaus2/util/FileTempFileContainer.hpp:81:80: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘virtual std::ostream& libmaus2::util::FileTempFileContainer::openOutputTempFile(uint64_t)’ at ./libmaus2/util/FileTempFileContainer.hpp:81:18: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘virtual std::ostream& libmaus2::util::FileTempFileContainer::openOutputTempFile(uint64_t)’ at ./libmaus2/util/FileTempFileContainer.hpp:82:27: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h:3250:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 3250 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = libmaus2::suffixsort::bwtb3m::MergeStrategyBlock*; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void libmaus2::suffixsort::bwtb3m::MergeStrategyBaseBlock::fillNodeMap(std::map&)’ at ./libmaus2/suffixsort/bwtb3m/MergeStrategyBaseBlock.hpp:198:14: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = libmaus2::suffixsort::bwtb3m::MergeStrategyBlock*; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void libmaus2::suffixsort::bwtb3m::MergeStrategyMergeBlock::fillNodeMap(std::map&)’ at ./libmaus2/suffixsort/bwtb3m/MergeStrategyMergeBlock.hpp:55:14: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = libmaus2::suffixsort::bwtb3m::MergeStrategyBlock*; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void libmaus2::suffixsort::bwtb3m::MergeStrategyBaseBlock::fillNodeMap(std::map&)’ at ./libmaus2/suffixsort/bwtb3m/MergeStrategyBaseBlock.hpp:198:14, inlined from ‘virtual void libmaus2::suffixsort::bwtb3m::MergeStrategyMergeBlock::fillNodeMap(std::map&)’ at ./libmaus2/suffixsort/bwtb3m/MergeStrategyMergeBlock.hpp:58:21: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = libmaus2::suffixsort::bwtb3m::MergeStrategyBlock*; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void libmaus2::suffixsort::bwtb3m::MergeStrategyBaseBlock::fillNodeMap(std::map&)’ at ./libmaus2/suffixsort/bwtb3m/MergeStrategyBaseBlock.hpp:198:14, inlined from ‘libmaus2::suffixsort::bwtb3m::MergeTree::MergeTree(std::istream&)’ at ./libmaus2/suffixsort/bwtb3m/MergeTree.hpp:58:28, inlined from ‘bool libmaus2::suffixsort::bwtb3m::MergeTree::checkSerialisation() const’ at ./libmaus2/suffixsort/bwtb3m/MergeTree.hpp:135:32: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = libmaus2::suffixsort::bwtb3m::MergeStrategyBlock*; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void libmaus2::suffixsort::bwtb3m::MergeStrategyBaseBlock::fillNodeMap(std::map&)’ at ./libmaus2/suffixsort/bwtb3m/MergeStrategyBaseBlock.hpp:198:14, inlined from ‘libmaus2::suffixsort::bwtb3m::MergeTree::MergeTree(libmaus2::suffixsort::bwtb3m::MergeStrategyBlock::shared_ptr_type)’ at ./libmaus2/suffixsort/bwtb3m/MergeTree.hpp:49:28, inlined from ‘static std::shared_ptr libmaus2::suffixsort::bwtb3m::MergeStrategyConstruction::constructMergeTree(std::vector >, uint64_t, uint64_t, uint64_t, std::ostream*)’ at ./libmaus2/suffixsort/bwtb3m/MergeStrategyConstruction.hpp:165:54: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr::SparseGammaGapMergeInfo>; _Compare = std::less; _Alloc = std::allocator::SparseGammaGapMergeInfo> > >]’, inlined from ‘bool libmaus2::gamma::SparseGammaGapMultiFileLevelSetTemplate<_data_type>::checkMergePacket(uint64_t&, uint64_t&) [with _data_type = long long unsigned int]’ at ./libmaus2/gamma/SparseGammaGapMultiFileLevelSet.hpp:167:18: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree::SparseGammaGapMergeInfo> >, std::_Select1st::SparseGammaGapMergeInfo> > >, std::less, std::allocator::SparseGammaGapMergeInfo> > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h: In function ‘constexpr void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Distance = int; _Tp = pair; _Compare = libmaus2::sorting::MergingReadBack::HeapOrderAdapter]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:229:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 229 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr::SparseGammaGapMergeInfo>; _Compare = std::less; _Alloc = std::allocator::SparseGammaGapMergeInfo> > >]’, inlined from ‘typename libmaus2::gamma::SparseGammaGapMergeTemplate<_data_type>::SparseGammaGapMergeInfo* libmaus2::gamma::SparseGammaGapMultiFileLevelSetTemplate<_data_type>::queueMergeInfo(const libmaus2::gamma::SparseGammaGapMultiFile&, const libmaus2::gamma::SparseGammaGapMultiFile&) [with _data_type = long long unsigned int]’ at ./libmaus2/gamma/SparseGammaGapMultiFileLevelSet.hpp:197:18: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree::SparseGammaGapMergeInfo> >, std::_Select1st::SparseGammaGapMergeInfo> > >, std::less, std::allocator::SparseGammaGapMergeInfo> > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr::SparseGammaGapMergeInfo>; _Compare = std::less; _Alloc = std::allocator::SparseGammaGapMergeInfo> > >]’, inlined from ‘typename libmaus2::gamma::SparseGammaGapMergeTemplate<_data_type>::SparseGammaGapMergeInfo* libmaus2::gamma::SparseGammaGapMultiFileLevelSetTemplate<_data_type>::queueMergeInfo(const libmaus2::gamma::SparseGammaGapMultiFile&, const libmaus2::gamma::SparseGammaGapMultiFile&) [with _data_type = long long unsigned int]’ at ./libmaus2/gamma/SparseGammaGapMultiFileLevelSet.hpp:198:14: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree::SparseGammaGapMergeInfo> >, std::_Select1st::SparseGammaGapMergeInfo> > >, std::less, std::allocator::SparseGammaGapMergeInfo> > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h: In function ‘constexpr void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Distance = int; _Tp = pair; _Compare = libmaus2::sorting::SerialisingMergingReadBack >::HeapOrderAdapter]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:229:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 229 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h: In function ‘constexpr void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Distance = int; _Tp = pair; _Compare = libmaus2::sorting::SerialisingMergingReadBack::HeapOrderAdapter]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:229:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 In file included from ./libmaus2/wavelet/ImpCompactHuffmanWaveletTree.hpp:26, from ./libmaus2/lf/ImpCompactHuffmanWaveletLF.hpp:23, from ./libmaus2/suffixsort/bwtb3m/BwtMergeComputeSampledSA.hpp:24: ./libmaus2/huffman/HuffmanTree.hpp: In constructor ‘libmaus2::huffman::HuffmanTree::HuffmanTree(iterator, uint64_t, bool, bool, bool) [with iterator = std::_Rb_tree_iterator >]’: ./libmaus2/huffman/HuffmanTree.hpp:643:25: note: parameter passing for argument of type ‘std::_Rb_tree_iterator >’ changed in GCC 7.1 643 | HuffmanTree(iterator F, uint64_t const s, bool const sortbydepth = false, bool const rsetcode = false, bool const rdfsorder = false) | ^~~~~~~~~~~ In function ‘constexpr void std::pop_heap(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator > >; _Compare = less]’, inlined from ‘void std::priority_queue<_Tp, _Sequence, _Compare>::pop() [with _Tp = libmaus2::gamma::SparseGammaGapMultiFile; _Sequence = std::vector >; _Compare = std::less]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_queue.h:894:15, inlined from ‘std::vector > libmaus2::gamma::SparseGammaGapMultiFileLevelSetTemplate<_data_type>::merge(const std::string&, uint64_t) [with _data_type = long long unsigned int]’ at ./libmaus2/gamma/SparseGammaGapMultiFileLevelSet.hpp:387:30: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:334:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 334 | std::__pop_heap(__first, __last, __last, __comp); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘constexpr void std::pop_heap(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator > >; _Compare = less]’, inlined from ‘void std::priority_queue<_Tp, _Sequence, _Compare>::pop() [with _Tp = libmaus2::gamma::SparseGammaGapMultiFile; _Sequence = std::vector >; _Compare = std::less]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_queue.h:894:15, inlined from ‘std::vector > libmaus2::gamma::SparseGammaGapMultiFileLevelSetTemplate<_data_type>::merge(const std::string&, uint64_t) [with _data_type = long long unsigned int]’ at ./libmaus2/gamma/SparseGammaGapMultiFileLevelSet.hpp:388:31: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:334:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 334 | std::__pop_heap(__first, __last, __last, __comp); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘void libmaus2::suffixsort::bwtb3m::BwtMergeSortState::computeHuffmanTree()’, inlined from ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeBwt(const libmaus2::suffixsort::bwtb3m::BwtMergeSortOptions&, std::ostream*) [with input_types_type = libmaus2::suffixsort::ByteInputTypes<32>]’ at ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:3936:30: ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:552:49: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::iterator’ changed in GCC 7.1 552 | ) | ^ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h:3250:7: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 3250 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = long long unsigned int; _Tp = std::deque; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘void libmaus2::gamma::SparseGammaGapMultiFileLevelSetTemplate<_data_type>::putFile(const std::vector >&) [with _data_type = long long unsigned int]’ at ./libmaus2/gamma/SparseGammaGapMultiFileLevelSet.hpp:225:20: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:559:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 559 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = long long unsigned int; _Tp = std::deque; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘void libmaus2::gamma::SparseGammaGapMultiFileLevelSetTemplate<_data_type>::putFile(const std::vector >&) [with _data_type = long long unsigned int]’ at ./libmaus2/gamma/SparseGammaGapMultiFileLevelSet.hpp:227:22: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:559:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 559 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = long long unsigned int; _Tp = std::deque; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘void libmaus2::gamma::SparseGammaGapMultiFileLevelSetTemplate<_data_type>::putFile(const std::vector >&) [with _data_type = long long unsigned int]’ at ./libmaus2/gamma/SparseGammaGapMultiFileLevelSet.hpp:228:21: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:559:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 559 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = long long unsigned int; _Tp = std::deque; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘void libmaus2::gamma::SparseGammaGapMultiFileLevelSetTemplate<_data_type>::putFile(const std::vector >&) [with _data_type = long long unsigned int]’ at ./libmaus2/gamma/SparseGammaGapMultiFileLevelSet.hpp:232:21: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:559:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 559 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 | std::tuple<>()); | ~~~~~~~~~~~~~~~ libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateByte32.cpp -o libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplateByte32.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplateLz432.lo `test -f 'libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateLz432.cpp' || echo './'`libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateLz432.cpp libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateLz432.cpp -fPIC -DPIC -o libmaus2/suffixsort/bwtb3m/.libs/la-BwtMergeSortTemplateLz432.o In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/util/IntervalTree.hpp:25, from ./libmaus2/gamma/GammaRLDecoder.hpp:28, from ./libmaus2/gamma/GammaRLEncoder.hpp:29, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:24, from ./libmaus2/suffixsort/bwtb3m/BwtMergeComputeSampledSA.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateLz432.cpp:20: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/suffixsort/bwtb3m/GapArrayWrapper.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeIsaParallelBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:24: ./libmaus2/util/AtomicArray.hpp: At global scope: ./libmaus2/util/AtomicArray.hpp:45:43: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 45 | AtomicArray(AtomicArray const & O) = delete; | ^~~~~~~~~~~~~~~~~ ./libmaus2/util/AtomicArray.hpp:45:43: note: remove the ‘< >’ In file included from ./libmaus2/suffixsort/bwtb3m/BwtMergeIsaParallelBase.hpp:24: ./libmaus2/suffixsort/GapArrayByte.hpp: In member function ‘void libmaus2::suffixsort::GapArrayByte::flush()’: ./libmaus2/suffixsort/GapArrayByte.hpp:134:42: warning: variable ‘overflowcnt’ set but not used [-Wunused-but-set-variable=] 134 | uint64_t overflowcnt = 0; | ^~~~~~~~~~~ In file included from ./libmaus2/suffixsort/BwtMergeTempFileNameSet.hpp:27, from ./libmaus2/suffixsort/BwtMergeBlockSortResult.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:33: ./libmaus2/util/DirectoryStructure.hpp: In member function ‘std::string libmaus2::util::DirectoryStructure::printGenerate(std::ostream&, std::string, uint64_t) const’: ./libmaus2/util/DirectoryStructure.hpp:207:58: warning: variable ‘batchcnt’ set but not used [-Wunused-but-set-variable=] 207 | uint64_t batchcnt = 0; | ^~~~~~~~ ./libmaus2/util/DirectoryStructure.hpp: In member function ‘std::string libmaus2::util::DirectoryStructure::printRemove(std::ostream&, std::string, uint64_t) const’: ./libmaus2/util/DirectoryStructure.hpp:282:58: warning: variable ‘batchcnt’ set but not used [-Wunused-but-set-variable=] 282 | uint64_t batchcnt = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:183, from ./libmaus2/huffman/CanonicalEncoder.hpp:26, from ./libmaus2/huffman/RLEncoder.hpp:25, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22: ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 2]’: ./libmaus2/huffman/HuffmanSorting.hpp:860:55: required from here 860 | huffman::EncodeTable enctable ( root ); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:188: ./libmaus2/huffman/HuffmanSorting.hpp: In instantiation of ‘static void libmaus2::huffman::HuffmanSorting::uncompressHuffmanCoded(uint64_t*, uint64_t, uint64_t, uint64_t, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::HuffmanTreeNode*, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::EncodeTable&) [with unsigned int lookupwords = 2; uint64_t = long long unsigned int]’: ./libmaus2/huffman/HuffmanSorting.hpp:1091:27: required from here 1091 | uncompressHuffmanCoded(acode.get(), 0 /* bit offset */, lowhalf /* syms */, firsthighsym, enctable,dectable,root.get(),dectable0,dectable1,enctable0,enctable1); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/huffman/HuffmanSorting.hpp:534:42: warning: variable ‘alldecoffset’ set but not used [-Wunused-but-set-variable=] 534 | uint64_t alldecoffset = highdecoffset; | ^~~~~~~~~~~~ ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 1]’: ./libmaus2/huffman/CanonicalEncoder.hpp:219:116: required from here 219 | return ::libmaus2::huffman::EncodeTable<1>::unique_ptr_type(new ::libmaus2::huffman::EncodeTable<1>(Ptree.get())); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/wavelet/RlToHwtBase.hpp:30, from ./libmaus2/wavelet/RlToHwtTermRequest.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:44: ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp: In instantiation of ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTree(libmaus2::autoarray::AutoArray&, const std::string&, const std::string&, const libmaus2::huffman::HuffmanTree*, uint64_t) [with bool radixsort = true; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’: ./libmaus2/suffixsort/BwtMergeBlockSortRequest.hpp:862:90: required from ‘libmaus2::suffixsort::BwtMergeBlockSortResult libmaus2::suffixsort::BwtMergeBlockSortRequest::sortBlock(std::ostream*) const [with input_types_type = libmaus2::suffixsort::ByteInputTypes<32>; rl_encoder = libmaus2::huffman::RLEncoderTemplate, libmaus2::bitio::FastWriteBitWriterTemplate >, 128, 255, false> > >; std::ostream = std::basic_ostream]’ 862 | ::libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTree( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 863 | UT,tmpfilenames.getHWT(),tmpfileprefix,uhnode.get(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 864 | 1/* num threads */ | ~~~~~~~~~~~~~~~~~~ 865 | ); | ~ ./libmaus2/suffixsort/BwtMergeBlockSortRequest.hpp:979:79: required from ‘std::string libmaus2::suffixsort::BwtMergeBlockSortRequest::dispatch(std::ostream*) const [with rl_encoder = libmaus2::huffman::RLEncoderTemplate, libmaus2::bitio::FastWriteBitWriterTemplate >, 128, 255, false> > >; std::string = std::__cxx11::basic_string; std::ostream = std::basic_ostream]’ 979 | result = sortBlock,rl_encoder>(logstr); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BaseBlockSortThread.hpp:128:118: required from here 128 | block->sortresult = ::libmaus2::suffixsort::BwtMergeBlockSortResult::load(block->sortreq.dispatch(logstr)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:874:90: warning: variable ‘l_numsyms0’ set but not used [-Wunused-but-set-variable=] 874 | uint64_t l_numsyms0 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:879:90: warning: variable ‘r_numsyms1’ set but not used [-Wunused-but-set-variable=] 879 | uint64_t r_numsyms1 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:755:66: warning: variable ‘numsyms1’ set but not used [-Wunused-but-set-variable=] 755 | uint64_t numsyms1 = 0; | ^~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp: In instantiation of ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRl(const std::string&, const std::string&, const std::string&, const libmaus2::huffman::HuffmanTree&, uint64_t, uint64_t) [with rl_decoder = libmaus2::huffman::RLDecoder; bool radixsort = true; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1368:123: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwt(const std::string&, const std::string&, std::string, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’ 1368 | ::libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRl( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 1369 | bwt,hwt,tmpprefix,H, | ~~~~~~~~~~~~~~~~~~~~ 1370 | utf8WaveletMaxPartMem() /* part size maximum */, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1371 | utf8WaveletMaxThreads()); | ~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:4191:65: required from ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeBwt(const libmaus2::suffixsort::bwtb3m::BwtMergeSortOptions&, std::ostream*) [with input_types_type = libmaus2::suffixsort::Lz4InputTypes<32>; std::ostream = std::basic_ostream]’ 4191 | libmaus2::wavelet::RlToHwtBase::rlToHwt(options.outfn, outhwt, options.tmpfilenamebase+"_finalhwttmp",options.numthreads) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateLz432.cpp:22:47: required from here 22 | template struct libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate< libmaus2::suffixsort::Lz4InputTypes<32> >; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1419:90: warning: variable ‘l_numsyms0’ set but not used [-Wunused-but-set-variable=] 1419 | uint64_t l_numsyms0 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1424:90: warning: variable ‘r_numsyms1’ set but not used [-Wunused-but-set-variable=] 1424 | uint64_t r_numsyms1 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1299:66: warning: variable ‘numsyms1’ set but not used [-Wunused-but-set-variable=] 1299 | uint64_t numsyms1 = 0; | ^~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp: In instantiation of ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRlWithTerm(const std::vector >&, const std::string&, const std::string&, const libmaus2::huffman::HuffmanTree&, uint64_t, uint64_t, uint64_t, uint64_t) [with rl_decoder = libmaus2::huffman::RLDecoder; bool radixsort = true; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1500:131: required from ‘static void libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtTerm(const std::vector >&, const std::string&, std::string, libmaus2::huffman::HuffmanTree&, uint64_t, uint64_t, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’ 1500 | ::libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRlWithTerm( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 1501 | bwt,hwt,tmpprefix,H,p0r,bwtterm, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1502 | utf8WaveletMaxPartMem() /* maximum part size */, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1503 | utf8WaveletMaxThreads() | ~~~~~~~~~~~~~~~~~~~~~~~ 1504 | ); | ~ ./libmaus2/wavelet/RlToHwtBase.hpp:1687:17: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtTerm(const std::vector >&, const std::string&, std::string, std::string, uint64_t, uint64_t, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’ 1687 | rlToHwtTerm(bwt,hwt,tmpprefix,H,bwtterm,p0r,numthreads); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/wavelet/RlToHwtTermRequest.hpp:118:67: required from ‘libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtTermRequest::dispatch() [with rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >]’ 118 | libmaus2::wavelet::RlToHwtBase::rlToHwtTerm(bwt,hwt,tmpprefix,huftreefilename,bwtterm,p0r,numthreads) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:926:102: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::ensureWaveletTreeGenerated(const libmaus2::suffixsort::BwtMergeBlockSortResult&, std::ostream*) [with input_types_type = libmaus2::suffixsort::Lz4InputTypes<32>; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::ostream = std::basic_ostream]’ 926 | libmaus2::wavelet::ImpCompactHuffmanWaveletTree::unique_ptr_type ptr(ureq->dispatch()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~ libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateLz432.cpp:22:47: required from here 22 | template struct libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate< libmaus2::suffixsort::Lz4InputTypes<32> >; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:2048:90: warning: variable ‘l_numsyms0’ set but not used [-Wunused-but-set-variable=] 2048 | uint64_t l_numsyms0 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:2053:90: warning: variable ‘r_numsyms1’ set but not used [-Wunused-but-set-variable=] 2053 | uint64_t r_numsyms1 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1929:66: warning: variable ‘numsyms1’ set but not used [-Wunused-but-set-variable=] 1929 | uint64_t numsyms1 = 0; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/16/map:64, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:51, from ./libmaus2/math/numbits.hpp:24, from ./libmaus2/huffman/IndexWriter.hpp:24, from ./libmaus2/huffman/RLEncoder.hpp:22: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h: In function ‘std::pair::rebind<_Val>::other>::pointer>::_Base_ptr, typename std::__rb_tree::_Node_traits<_Val, typename __gnu_cxx::__alloc_traits::rebind<_Val>::other>::pointer>::_Base_ptr> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(const_iterator, const key_type&) [with _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h:2952:5: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 2952 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h:3250:7: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 3250 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair::SparseGammaGapMergeInfo> >; _KeyOfValue = std::_Select1st::SparseGammaGapMergeInfo> > >; _Compare = std::less; _Alloc = std::allocator::SparseGammaGapMergeInfo> > >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h:3250:7: note: parameter passing for argument of type ‘std::_Rb_tree::SparseGammaGapMergeInfo> >, std::_Select1st::SparseGammaGapMergeInfo> > >, std::less, std::allocator::SparseGammaGapMergeInfo> > > >::const_iterator’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h:3250:7: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h:3250:7: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/16/map:65: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘virtual std::ostream& libmaus2::util::FileTempFileContainer::getOutputTempFile(uint64_t)’ at ./libmaus2/util/FileTempFileContainer.hpp:93:27: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘virtual std::istream& libmaus2::util::FileTempFileContainer::openInputTempFile(uint64_t)’ at ./libmaus2/util/FileTempFileContainer.hpp:121:17: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘virtual std::istream& libmaus2::util::FileTempFileContainer::openInputTempFile(uint64_t)’ at ./libmaus2/util/FileTempFileContainer.hpp:123:26: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/16/algorithm:63, from ./libmaus2/autoarray/AutoArray.hpp:35: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h: In function ‘constexpr void std::__pop_heap(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Compare = less]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:257:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 257 | __pop_heap(_RandomAccessIterator __first, _RandomAccessIterator __last, | ^~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:257:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:257:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::__cxx11::basic_string; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘virtual std::ostream& libmaus2::util::FileTempFileContainer::openOutputTempFile(uint64_t)’ at ./libmaus2/util/FileTempFileContainer.hpp:79:17: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::__cxx11::basic_string; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘virtual std::ostream& libmaus2::util::FileTempFileContainer::openOutputTempFile(uint64_t)’ at ./libmaus2/util/FileTempFileContainer.hpp:80:71: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::__cxx11::basic_string; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘virtual std::ostream& libmaus2::util::FileTempFileContainer::openOutputTempFile(uint64_t)’ at ./libmaus2/util/FileTempFileContainer.hpp:81:80: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘virtual std::ostream& libmaus2::util::FileTempFileContainer::openOutputTempFile(uint64_t)’ at ./libmaus2/util/FileTempFileContainer.hpp:81:18: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘virtual std::ostream& libmaus2::util::FileTempFileContainer::openOutputTempFile(uint64_t)’ at ./libmaus2/util/FileTempFileContainer.hpp:82:27: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h:3250:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 3250 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = libmaus2::suffixsort::bwtb3m::MergeStrategyBlock*; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void libmaus2::suffixsort::bwtb3m::MergeStrategyBaseBlock::fillNodeMap(std::map&)’ at ./libmaus2/suffixsort/bwtb3m/MergeStrategyBaseBlock.hpp:198:14: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = libmaus2::suffixsort::bwtb3m::MergeStrategyBlock*; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void libmaus2::suffixsort::bwtb3m::MergeStrategyMergeBlock::fillNodeMap(std::map&)’ at ./libmaus2/suffixsort/bwtb3m/MergeStrategyMergeBlock.hpp:55:14: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = libmaus2::suffixsort::bwtb3m::MergeStrategyBlock*; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void libmaus2::suffixsort::bwtb3m::MergeStrategyBaseBlock::fillNodeMap(std::map&)’ at ./libmaus2/suffixsort/bwtb3m/MergeStrategyBaseBlock.hpp:198:14, inlined from ‘virtual void libmaus2::suffixsort::bwtb3m::MergeStrategyMergeBlock::fillNodeMap(std::map&)’ at ./libmaus2/suffixsort/bwtb3m/MergeStrategyMergeBlock.hpp:58:21: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = libmaus2::suffixsort::bwtb3m::MergeStrategyBlock*; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void libmaus2::suffixsort::bwtb3m::MergeStrategyBaseBlock::fillNodeMap(std::map&)’ at ./libmaus2/suffixsort/bwtb3m/MergeStrategyBaseBlock.hpp:198:14, inlined from ‘libmaus2::suffixsort::bwtb3m::MergeTree::MergeTree(std::istream&)’ at ./libmaus2/suffixsort/bwtb3m/MergeTree.hpp:58:28, inlined from ‘bool libmaus2::suffixsort::bwtb3m::MergeTree::checkSerialisation() const’ at ./libmaus2/suffixsort/bwtb3m/MergeTree.hpp:135:32: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = libmaus2::suffixsort::bwtb3m::MergeStrategyBlock*; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void libmaus2::suffixsort::bwtb3m::MergeStrategyBaseBlock::fillNodeMap(std::map&)’ at ./libmaus2/suffixsort/bwtb3m/MergeStrategyBaseBlock.hpp:198:14, inlined from ‘libmaus2::suffixsort::bwtb3m::MergeTree::MergeTree(libmaus2::suffixsort::bwtb3m::MergeStrategyBlock::shared_ptr_type)’ at ./libmaus2/suffixsort/bwtb3m/MergeTree.hpp:49:28, inlined from ‘static std::shared_ptr libmaus2::suffixsort::bwtb3m::MergeStrategyConstruction::constructMergeTree(std::vector >, uint64_t, uint64_t, uint64_t, std::ostream*)’ at ./libmaus2/suffixsort/bwtb3m/MergeStrategyConstruction.hpp:165:54: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr::SparseGammaGapMergeInfo>; _Compare = std::less; _Alloc = std::allocator::SparseGammaGapMergeInfo> > >]’, inlined from ‘bool libmaus2::gamma::SparseGammaGapMultiFileLevelSetTemplate<_data_type>::checkMergePacket(uint64_t&, uint64_t&) [with _data_type = long long unsigned int]’ at ./libmaus2/gamma/SparseGammaGapMultiFileLevelSet.hpp:167:18: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree::SparseGammaGapMergeInfo> >, std::_Select1st::SparseGammaGapMergeInfo> > >, std::less, std::allocator::SparseGammaGapMergeInfo> > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h: In function ‘constexpr void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Distance = int; _Tp = pair; _Compare = libmaus2::sorting::MergingReadBack::HeapOrderAdapter]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:229:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 229 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr::SparseGammaGapMergeInfo>; _Compare = std::less; _Alloc = std::allocator::SparseGammaGapMergeInfo> > >]’, inlined from ‘typename libmaus2::gamma::SparseGammaGapMergeTemplate<_data_type>::SparseGammaGapMergeInfo* libmaus2::gamma::SparseGammaGapMultiFileLevelSetTemplate<_data_type>::queueMergeInfo(const libmaus2::gamma::SparseGammaGapMultiFile&, const libmaus2::gamma::SparseGammaGapMultiFile&) [with _data_type = long long unsigned int]’ at ./libmaus2/gamma/SparseGammaGapMultiFileLevelSet.hpp:197:18: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree::SparseGammaGapMergeInfo> >, std::_Select1st::SparseGammaGapMergeInfo> > >, std::less, std::allocator::SparseGammaGapMergeInfo> > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr::SparseGammaGapMergeInfo>; _Compare = std::less; _Alloc = std::allocator::SparseGammaGapMergeInfo> > >]’, inlined from ‘typename libmaus2::gamma::SparseGammaGapMergeTemplate<_data_type>::SparseGammaGapMergeInfo* libmaus2::gamma::SparseGammaGapMultiFileLevelSetTemplate<_data_type>::queueMergeInfo(const libmaus2::gamma::SparseGammaGapMultiFile&, const libmaus2::gamma::SparseGammaGapMultiFile&) [with _data_type = long long unsigned int]’ at ./libmaus2/gamma/SparseGammaGapMultiFileLevelSet.hpp:198:14: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree::SparseGammaGapMergeInfo> >, std::_Select1st::SparseGammaGapMergeInfo> > >, std::less, std::allocator::SparseGammaGapMergeInfo> > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h: In function ‘constexpr void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Distance = int; _Tp = pair; _Compare = libmaus2::sorting::SerialisingMergingReadBack >::HeapOrderAdapter]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:229:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 229 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h: In function ‘constexpr void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Distance = int; _Tp = pair; _Compare = libmaus2::sorting::SerialisingMergingReadBack::HeapOrderAdapter]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:229:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 In file included from ./libmaus2/wavelet/ImpCompactHuffmanWaveletTree.hpp:26, from ./libmaus2/lf/ImpCompactHuffmanWaveletLF.hpp:23, from ./libmaus2/suffixsort/bwtb3m/BwtMergeComputeSampledSA.hpp:24: ./libmaus2/huffman/HuffmanTree.hpp: In constructor ‘libmaus2::huffman::HuffmanTree::HuffmanTree(iterator, uint64_t, bool, bool, bool) [with iterator = std::_Rb_tree_iterator >]’: ./libmaus2/huffman/HuffmanTree.hpp:643:25: note: parameter passing for argument of type ‘std::_Rb_tree_iterator >’ changed in GCC 7.1 643 | HuffmanTree(iterator F, uint64_t const s, bool const sortbydepth = false, bool const rsetcode = false, bool const rdfsorder = false) | ^~~~~~~~~~~ In function ‘constexpr void std::pop_heap(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator > >; _Compare = less]’, inlined from ‘void std::priority_queue<_Tp, _Sequence, _Compare>::pop() [with _Tp = libmaus2::gamma::SparseGammaGapMultiFile; _Sequence = std::vector >; _Compare = std::less]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_queue.h:894:15, inlined from ‘std::vector > libmaus2::gamma::SparseGammaGapMultiFileLevelSetTemplate<_data_type>::merge(const std::string&, uint64_t) [with _data_type = long long unsigned int]’ at ./libmaus2/gamma/SparseGammaGapMultiFileLevelSet.hpp:387:30: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:334:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 334 | std::__pop_heap(__first, __last, __last, __comp); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘constexpr void std::pop_heap(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator > >; _Compare = less]’, inlined from ‘void std::priority_queue<_Tp, _Sequence, _Compare>::pop() [with _Tp = libmaus2::gamma::SparseGammaGapMultiFile; _Sequence = std::vector >; _Compare = std::less]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_queue.h:894:15, inlined from ‘std::vector > libmaus2::gamma::SparseGammaGapMultiFileLevelSetTemplate<_data_type>::merge(const std::string&, uint64_t) [with _data_type = long long unsigned int]’ at ./libmaus2/gamma/SparseGammaGapMultiFileLevelSet.hpp:388:31: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:334:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 334 | std::__pop_heap(__first, __last, __last, __comp); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘void libmaus2::suffixsort::bwtb3m::BwtMergeSortState::computeHuffmanTree()’, inlined from ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeBwt(const libmaus2::suffixsort::bwtb3m::BwtMergeSortOptions&, std::ostream*) [with input_types_type = libmaus2::suffixsort::Lz4InputTypes<32>]’ at ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:3936:30: ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:552:49: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::iterator’ changed in GCC 7.1 552 | ) | ^ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h:3250:7: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 3250 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = long long unsigned int; _Tp = std::deque; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘void libmaus2::gamma::SparseGammaGapMultiFileLevelSetTemplate<_data_type>::putFile(const std::vector >&) [with _data_type = long long unsigned int]’ at ./libmaus2/gamma/SparseGammaGapMultiFileLevelSet.hpp:225:20: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:559:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 559 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = long long unsigned int; _Tp = std::deque; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘void libmaus2::gamma::SparseGammaGapMultiFileLevelSetTemplate<_data_type>::putFile(const std::vector >&) [with _data_type = long long unsigned int]’ at ./libmaus2/gamma/SparseGammaGapMultiFileLevelSet.hpp:227:22: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:559:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 559 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = long long unsigned int; _Tp = std::deque; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘void libmaus2::gamma::SparseGammaGapMultiFileLevelSetTemplate<_data_type>::putFile(const std::vector >&) [with _data_type = long long unsigned int]’ at ./libmaus2/gamma/SparseGammaGapMultiFileLevelSet.hpp:228:21: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:559:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 559 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = long long unsigned int; _Tp = std::deque; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘void libmaus2::gamma::SparseGammaGapMultiFileLevelSetTemplate<_data_type>::putFile(const std::vector >&) [with _data_type = long long unsigned int]’ at ./libmaus2/gamma/SparseGammaGapMultiFileLevelSet.hpp:232:21: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:559:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 559 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 | std::tuple<>()); | ~~~~~~~~~~~~~~~ libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateLz432.cpp -o libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplateLz432.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplatePacTerm32.lo `test -f 'libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplatePacTerm32.cpp' || echo './'`libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplatePacTerm32.cpp libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplatePacTerm32.cpp -fPIC -DPIC -o libmaus2/suffixsort/bwtb3m/.libs/la-BwtMergeSortTemplatePacTerm32.o In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/util/IntervalTree.hpp:25, from ./libmaus2/gamma/GammaRLDecoder.hpp:28, from ./libmaus2/gamma/GammaRLEncoder.hpp:29, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:24, from ./libmaus2/suffixsort/bwtb3m/BwtMergeComputeSampledSA.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplatePacTerm32.cpp:20: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/suffixsort/bwtb3m/GapArrayWrapper.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeIsaParallelBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:24: ./libmaus2/util/AtomicArray.hpp: At global scope: ./libmaus2/util/AtomicArray.hpp:45:43: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 45 | AtomicArray(AtomicArray const & O) = delete; | ^~~~~~~~~~~~~~~~~ ./libmaus2/util/AtomicArray.hpp:45:43: note: remove the ‘< >’ In file included from ./libmaus2/suffixsort/bwtb3m/BwtMergeIsaParallelBase.hpp:24: ./libmaus2/suffixsort/GapArrayByte.hpp: In member function ‘void libmaus2::suffixsort::GapArrayByte::flush()’: ./libmaus2/suffixsort/GapArrayByte.hpp:134:42: warning: variable ‘overflowcnt’ set but not used [-Wunused-but-set-variable=] 134 | uint64_t overflowcnt = 0; | ^~~~~~~~~~~ In file included from ./libmaus2/suffixsort/BwtMergeTempFileNameSet.hpp:27, from ./libmaus2/suffixsort/BwtMergeBlockSortResult.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:33: ./libmaus2/util/DirectoryStructure.hpp: In member function ‘std::string libmaus2::util::DirectoryStructure::printGenerate(std::ostream&, std::string, uint64_t) const’: ./libmaus2/util/DirectoryStructure.hpp:207:58: warning: variable ‘batchcnt’ set but not used [-Wunused-but-set-variable=] 207 | uint64_t batchcnt = 0; | ^~~~~~~~ ./libmaus2/util/DirectoryStructure.hpp: In member function ‘std::string libmaus2::util::DirectoryStructure::printRemove(std::ostream&, std::string, uint64_t) const’: ./libmaus2/util/DirectoryStructure.hpp:282:58: warning: variable ‘batchcnt’ set but not used [-Wunused-but-set-variable=] 282 | uint64_t batchcnt = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:183, from ./libmaus2/huffman/CanonicalEncoder.hpp:26, from ./libmaus2/huffman/RLEncoder.hpp:25, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22: ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 2]’: ./libmaus2/huffman/HuffmanSorting.hpp:860:55: required from here 860 | huffman::EncodeTable enctable ( root ); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:188: ./libmaus2/huffman/HuffmanSorting.hpp: In instantiation of ‘static void libmaus2::huffman::HuffmanSorting::uncompressHuffmanCoded(uint64_t*, uint64_t, uint64_t, uint64_t, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::HuffmanTreeNode*, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::EncodeTable&) [with unsigned int lookupwords = 2; uint64_t = long long unsigned int]’: ./libmaus2/huffman/HuffmanSorting.hpp:1091:27: required from here 1091 | uncompressHuffmanCoded(acode.get(), 0 /* bit offset */, lowhalf /* syms */, firsthighsym, enctable,dectable,root.get(),dectable0,dectable1,enctable0,enctable1); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/huffman/HuffmanSorting.hpp:534:42: warning: variable ‘alldecoffset’ set but not used [-Wunused-but-set-variable=] 534 | uint64_t alldecoffset = highdecoffset; | ^~~~~~~~~~~~ ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 1]’: ./libmaus2/huffman/CanonicalEncoder.hpp:219:116: required from here 219 | return ::libmaus2::huffman::EncodeTable<1>::unique_ptr_type(new ::libmaus2::huffman::EncodeTable<1>(Ptree.get())); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/wavelet/RlToHwtBase.hpp:30, from ./libmaus2/wavelet/RlToHwtTermRequest.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:44: ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp: In instantiation of ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTree(libmaus2::autoarray::AutoArray&, const std::string&, const std::string&, const libmaus2::huffman::HuffmanTree*, uint64_t) [with bool radixsort = true; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’: ./libmaus2/suffixsort/BwtMergeBlockSortRequest.hpp:862:90: required from ‘libmaus2::suffixsort::BwtMergeBlockSortResult libmaus2::suffixsort::BwtMergeBlockSortRequest::sortBlock(std::ostream*) const [with input_types_type = libmaus2::suffixsort::ByteInputTypes<32>; rl_encoder = libmaus2::huffman::RLEncoderTemplate, libmaus2::bitio::FastWriteBitWriterTemplate >, 128, 255, false> > >; std::ostream = std::basic_ostream]’ 862 | ::libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTree( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 863 | UT,tmpfilenames.getHWT(),tmpfileprefix,uhnode.get(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 864 | 1/* num threads */ | ~~~~~~~~~~~~~~~~~~ 865 | ); | ~ ./libmaus2/suffixsort/BwtMergeBlockSortRequest.hpp:979:79: required from ‘std::string libmaus2::suffixsort::BwtMergeBlockSortRequest::dispatch(std::ostream*) const [with rl_encoder = libmaus2::huffman::RLEncoderTemplate, libmaus2::bitio::FastWriteBitWriterTemplate >, 128, 255, false> > >; std::string = std::__cxx11::basic_string; std::ostream = std::basic_ostream]’ 979 | result = sortBlock,rl_encoder>(logstr); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BaseBlockSortThread.hpp:128:118: required from here 128 | block->sortresult = ::libmaus2::suffixsort::BwtMergeBlockSortResult::load(block->sortreq.dispatch(logstr)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:874:90: warning: variable ‘l_numsyms0’ set but not used [-Wunused-but-set-variable=] 874 | uint64_t l_numsyms0 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:879:90: warning: variable ‘r_numsyms1’ set but not used [-Wunused-but-set-variable=] 879 | uint64_t r_numsyms1 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:755:66: warning: variable ‘numsyms1’ set but not used [-Wunused-but-set-variable=] 755 | uint64_t numsyms1 = 0; | ^~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp: In instantiation of ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRl(const std::string&, const std::string&, const std::string&, const libmaus2::huffman::HuffmanTree&, uint64_t, uint64_t) [with rl_decoder = libmaus2::huffman::RLDecoder; bool radixsort = true; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1368:123: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwt(const std::string&, const std::string&, std::string, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’ 1368 | ::libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRl( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 1369 | bwt,hwt,tmpprefix,H, | ~~~~~~~~~~~~~~~~~~~~ 1370 | utf8WaveletMaxPartMem() /* part size maximum */, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1371 | utf8WaveletMaxThreads()); | ~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:4191:65: required from ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeBwt(const libmaus2::suffixsort::bwtb3m::BwtMergeSortOptions&, std::ostream*) [with input_types_type = libmaus2::suffixsort::PacTermInputTypes<32>; std::ostream = std::basic_ostream]’ 4191 | libmaus2::wavelet::RlToHwtBase::rlToHwt(options.outfn, outhwt, options.tmpfilenamebase+"_finalhwttmp",options.numthreads) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplatePacTerm32.cpp:22:47: required from here 22 | template struct libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate< libmaus2::suffixsort::PacTermInputTypes<32> >; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1419:90: warning: variable ‘l_numsyms0’ set but not used [-Wunused-but-set-variable=] 1419 | uint64_t l_numsyms0 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1424:90: warning: variable ‘r_numsyms1’ set but not used [-Wunused-but-set-variable=] 1424 | uint64_t r_numsyms1 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1299:66: warning: variable ‘numsyms1’ set but not used [-Wunused-but-set-variable=] 1299 | uint64_t numsyms1 = 0; | ^~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp: In instantiation of ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRlWithTerm(const std::vector >&, const std::string&, const std::string&, const libmaus2::huffman::HuffmanTree&, uint64_t, uint64_t, uint64_t, uint64_t) [with rl_decoder = libmaus2::huffman::RLDecoder; bool radixsort = true; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1500:131: required from ‘static void libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtTerm(const std::vector >&, const std::string&, std::string, libmaus2::huffman::HuffmanTree&, uint64_t, uint64_t, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’ 1500 | ::libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRlWithTerm( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 1501 | bwt,hwt,tmpprefix,H,p0r,bwtterm, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1502 | utf8WaveletMaxPartMem() /* maximum part size */, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1503 | utf8WaveletMaxThreads() | ~~~~~~~~~~~~~~~~~~~~~~~ 1504 | ); | ~ ./libmaus2/wavelet/RlToHwtBase.hpp:1687:17: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtTerm(const std::vector >&, const std::string&, std::string, std::string, uint64_t, uint64_t, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’ 1687 | rlToHwtTerm(bwt,hwt,tmpprefix,H,bwtterm,p0r,numthreads); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/wavelet/RlToHwtTermRequest.hpp:118:67: required from ‘libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtTermRequest::dispatch() [with rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >]’ 118 | libmaus2::wavelet::RlToHwtBase::rlToHwtTerm(bwt,hwt,tmpprefix,huftreefilename,bwtterm,p0r,numthreads) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:926:102: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::ensureWaveletTreeGenerated(const libmaus2::suffixsort::BwtMergeBlockSortResult&, std::ostream*) [with input_types_type = libmaus2::suffixsort::PacTermInputTypes<32>; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::ostream = std::basic_ostream]’ 926 | libmaus2::wavelet::ImpCompactHuffmanWaveletTree::unique_ptr_type ptr(ureq->dispatch()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~ libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplatePacTerm32.cpp:22:47: required from here 22 | template struct libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate< libmaus2::suffixsort::PacTermInputTypes<32> >; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:2048:90: warning: variable ‘l_numsyms0’ set but not used [-Wunused-but-set-variable=] 2048 | uint64_t l_numsyms0 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:2053:90: warning: variable ‘r_numsyms1’ set but not used [-Wunused-but-set-variable=] 2053 | uint64_t r_numsyms1 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1929:66: warning: variable ‘numsyms1’ set but not used [-Wunused-but-set-variable=] 1929 | uint64_t numsyms1 = 0; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/16/map:64, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:51, from ./libmaus2/math/numbits.hpp:24, from ./libmaus2/huffman/IndexWriter.hpp:24, from ./libmaus2/huffman/RLEncoder.hpp:22: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h: In function ‘std::pair::rebind<_Val>::other>::pointer>::_Base_ptr, typename std::__rb_tree::_Node_traits<_Val, typename __gnu_cxx::__alloc_traits::rebind<_Val>::other>::pointer>::_Base_ptr> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(const_iterator, const key_type&) [with _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h:2952:5: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 2952 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h:3250:7: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 3250 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair::SparseGammaGapMergeInfo> >; _KeyOfValue = std::_Select1st::SparseGammaGapMergeInfo> > >; _Compare = std::less; _Alloc = std::allocator::SparseGammaGapMergeInfo> > >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h:3250:7: note: parameter passing for argument of type ‘std::_Rb_tree::SparseGammaGapMergeInfo> >, std::_Select1st::SparseGammaGapMergeInfo> > >, std::less, std::allocator::SparseGammaGapMergeInfo> > > >::const_iterator’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h:3250:7: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h:3250:7: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/16/map:65: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘virtual std::ostream& libmaus2::util::FileTempFileContainer::getOutputTempFile(uint64_t)’ at ./libmaus2/util/FileTempFileContainer.hpp:93:27: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘virtual std::istream& libmaus2::util::FileTempFileContainer::openInputTempFile(uint64_t)’ at ./libmaus2/util/FileTempFileContainer.hpp:121:17: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘virtual std::istream& libmaus2::util::FileTempFileContainer::openInputTempFile(uint64_t)’ at ./libmaus2/util/FileTempFileContainer.hpp:123:26: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/16/algorithm:63, from ./libmaus2/autoarray/AutoArray.hpp:35: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h: In function ‘constexpr void std::__pop_heap(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Compare = less]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:257:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 257 | __pop_heap(_RandomAccessIterator __first, _RandomAccessIterator __last, | ^~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:257:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:257:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::__cxx11::basic_string; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘virtual std::ostream& libmaus2::util::FileTempFileContainer::openOutputTempFile(uint64_t)’ at ./libmaus2/util/FileTempFileContainer.hpp:79:17: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::__cxx11::basic_string; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘virtual std::ostream& libmaus2::util::FileTempFileContainer::openOutputTempFile(uint64_t)’ at ./libmaus2/util/FileTempFileContainer.hpp:80:71: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::__cxx11::basic_string; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘virtual std::ostream& libmaus2::util::FileTempFileContainer::openOutputTempFile(uint64_t)’ at ./libmaus2/util/FileTempFileContainer.hpp:81:80: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘virtual std::ostream& libmaus2::util::FileTempFileContainer::openOutputTempFile(uint64_t)’ at ./libmaus2/util/FileTempFileContainer.hpp:81:18: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘virtual std::ostream& libmaus2::util::FileTempFileContainer::openOutputTempFile(uint64_t)’ at ./libmaus2/util/FileTempFileContainer.hpp:82:27: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h:3250:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 3250 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = libmaus2::suffixsort::bwtb3m::MergeStrategyBlock*; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void libmaus2::suffixsort::bwtb3m::MergeStrategyBaseBlock::fillNodeMap(std::map&)’ at ./libmaus2/suffixsort/bwtb3m/MergeStrategyBaseBlock.hpp:198:14: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = libmaus2::suffixsort::bwtb3m::MergeStrategyBlock*; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void libmaus2::suffixsort::bwtb3m::MergeStrategyMergeBlock::fillNodeMap(std::map&)’ at ./libmaus2/suffixsort/bwtb3m/MergeStrategyMergeBlock.hpp:55:14: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = libmaus2::suffixsort::bwtb3m::MergeStrategyBlock*; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void libmaus2::suffixsort::bwtb3m::MergeStrategyBaseBlock::fillNodeMap(std::map&)’ at ./libmaus2/suffixsort/bwtb3m/MergeStrategyBaseBlock.hpp:198:14, inlined from ‘virtual void libmaus2::suffixsort::bwtb3m::MergeStrategyMergeBlock::fillNodeMap(std::map&)’ at ./libmaus2/suffixsort/bwtb3m/MergeStrategyMergeBlock.hpp:58:21: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = libmaus2::suffixsort::bwtb3m::MergeStrategyBlock*; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void libmaus2::suffixsort::bwtb3m::MergeStrategyBaseBlock::fillNodeMap(std::map&)’ at ./libmaus2/suffixsort/bwtb3m/MergeStrategyBaseBlock.hpp:198:14, inlined from ‘libmaus2::suffixsort::bwtb3m::MergeTree::MergeTree(std::istream&)’ at ./libmaus2/suffixsort/bwtb3m/MergeTree.hpp:58:28, inlined from ‘bool libmaus2::suffixsort::bwtb3m::MergeTree::checkSerialisation() const’ at ./libmaus2/suffixsort/bwtb3m/MergeTree.hpp:135:32: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = libmaus2::suffixsort::bwtb3m::MergeStrategyBlock*; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void libmaus2::suffixsort::bwtb3m::MergeStrategyBaseBlock::fillNodeMap(std::map&)’ at ./libmaus2/suffixsort/bwtb3m/MergeStrategyBaseBlock.hpp:198:14, inlined from ‘libmaus2::suffixsort::bwtb3m::MergeTree::MergeTree(libmaus2::suffixsort::bwtb3m::MergeStrategyBlock::shared_ptr_type)’ at ./libmaus2/suffixsort/bwtb3m/MergeTree.hpp:49:28, inlined from ‘static std::shared_ptr libmaus2::suffixsort::bwtb3m::MergeStrategyConstruction::constructMergeTree(std::vector >, uint64_t, uint64_t, uint64_t, std::ostream*)’ at ./libmaus2/suffixsort/bwtb3m/MergeStrategyConstruction.hpp:165:54: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr::SparseGammaGapMergeInfo>; _Compare = std::less; _Alloc = std::allocator::SparseGammaGapMergeInfo> > >]’, inlined from ‘bool libmaus2::gamma::SparseGammaGapMultiFileLevelSetTemplate<_data_type>::checkMergePacket(uint64_t&, uint64_t&) [with _data_type = long long unsigned int]’ at ./libmaus2/gamma/SparseGammaGapMultiFileLevelSet.hpp:167:18: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree::SparseGammaGapMergeInfo> >, std::_Select1st::SparseGammaGapMergeInfo> > >, std::less, std::allocator::SparseGammaGapMergeInfo> > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h: In function ‘constexpr void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Distance = int; _Tp = pair; _Compare = libmaus2::sorting::MergingReadBack::HeapOrderAdapter]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:229:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 229 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr::SparseGammaGapMergeInfo>; _Compare = std::less; _Alloc = std::allocator::SparseGammaGapMergeInfo> > >]’, inlined from ‘typename libmaus2::gamma::SparseGammaGapMergeTemplate<_data_type>::SparseGammaGapMergeInfo* libmaus2::gamma::SparseGammaGapMultiFileLevelSetTemplate<_data_type>::queueMergeInfo(const libmaus2::gamma::SparseGammaGapMultiFile&, const libmaus2::gamma::SparseGammaGapMultiFile&) [with _data_type = long long unsigned int]’ at ./libmaus2/gamma/SparseGammaGapMultiFileLevelSet.hpp:197:18: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree::SparseGammaGapMergeInfo> >, std::_Select1st::SparseGammaGapMergeInfo> > >, std::less, std::allocator::SparseGammaGapMergeInfo> > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr::SparseGammaGapMergeInfo>; _Compare = std::less; _Alloc = std::allocator::SparseGammaGapMergeInfo> > >]’, inlined from ‘typename libmaus2::gamma::SparseGammaGapMergeTemplate<_data_type>::SparseGammaGapMergeInfo* libmaus2::gamma::SparseGammaGapMultiFileLevelSetTemplate<_data_type>::queueMergeInfo(const libmaus2::gamma::SparseGammaGapMultiFile&, const libmaus2::gamma::SparseGammaGapMultiFile&) [with _data_type = long long unsigned int]’ at ./libmaus2/gamma/SparseGammaGapMultiFileLevelSet.hpp:198:14: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree::SparseGammaGapMergeInfo> >, std::_Select1st::SparseGammaGapMergeInfo> > >, std::less, std::allocator::SparseGammaGapMergeInfo> > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h: In function ‘constexpr void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Distance = int; _Tp = pair; _Compare = libmaus2::sorting::SerialisingMergingReadBack >::HeapOrderAdapter]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:229:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 229 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h: In function ‘constexpr void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Distance = int; _Tp = pair; _Compare = libmaus2::sorting::SerialisingMergingReadBack::HeapOrderAdapter]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:229:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 In file included from ./libmaus2/wavelet/ImpCompactHuffmanWaveletTree.hpp:26, from ./libmaus2/lf/ImpCompactHuffmanWaveletLF.hpp:23, from ./libmaus2/suffixsort/bwtb3m/BwtMergeComputeSampledSA.hpp:24: ./libmaus2/huffman/HuffmanTree.hpp: In constructor ‘libmaus2::huffman::HuffmanTree::HuffmanTree(iterator, uint64_t, bool, bool, bool) [with iterator = std::_Rb_tree_iterator >]’: ./libmaus2/huffman/HuffmanTree.hpp:643:25: note: parameter passing for argument of type ‘std::_Rb_tree_iterator >’ changed in GCC 7.1 643 | HuffmanTree(iterator F, uint64_t const s, bool const sortbydepth = false, bool const rsetcode = false, bool const rdfsorder = false) | ^~~~~~~~~~~ In function ‘constexpr void std::pop_heap(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator > >; _Compare = less]’, inlined from ‘void std::priority_queue<_Tp, _Sequence, _Compare>::pop() [with _Tp = libmaus2::gamma::SparseGammaGapMultiFile; _Sequence = std::vector >; _Compare = std::less]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_queue.h:894:15, inlined from ‘std::vector > libmaus2::gamma::SparseGammaGapMultiFileLevelSetTemplate<_data_type>::merge(const std::string&, uint64_t) [with _data_type = long long unsigned int]’ at ./libmaus2/gamma/SparseGammaGapMultiFileLevelSet.hpp:387:30: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:334:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 334 | std::__pop_heap(__first, __last, __last, __comp); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘constexpr void std::pop_heap(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator > >; _Compare = less]’, inlined from ‘void std::priority_queue<_Tp, _Sequence, _Compare>::pop() [with _Tp = libmaus2::gamma::SparseGammaGapMultiFile; _Sequence = std::vector >; _Compare = std::less]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_queue.h:894:15, inlined from ‘std::vector > libmaus2::gamma::SparseGammaGapMultiFileLevelSetTemplate<_data_type>::merge(const std::string&, uint64_t) [with _data_type = long long unsigned int]’ at ./libmaus2/gamma/SparseGammaGapMultiFileLevelSet.hpp:388:31: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:334:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 334 | std::__pop_heap(__first, __last, __last, __comp); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘void libmaus2::suffixsort::bwtb3m::BwtMergeSortState::computeHuffmanTree()’, inlined from ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeBwt(const libmaus2::suffixsort::bwtb3m::BwtMergeSortOptions&, std::ostream*) [with input_types_type = libmaus2::suffixsort::PacTermInputTypes<32>]’ at ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:3936:30: ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:552:49: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::iterator’ changed in GCC 7.1 552 | ) | ^ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h:3250:7: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 3250 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = long long unsigned int; _Tp = std::deque; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘void libmaus2::gamma::SparseGammaGapMultiFileLevelSetTemplate<_data_type>::putFile(const std::vector >&) [with _data_type = long long unsigned int]’ at ./libmaus2/gamma/SparseGammaGapMultiFileLevelSet.hpp:225:20: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:559:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 559 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = long long unsigned int; _Tp = std::deque; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘void libmaus2::gamma::SparseGammaGapMultiFileLevelSetTemplate<_data_type>::putFile(const std::vector >&) [with _data_type = long long unsigned int]’ at ./libmaus2/gamma/SparseGammaGapMultiFileLevelSet.hpp:227:22: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:559:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 559 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = long long unsigned int; _Tp = std::deque; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘void libmaus2::gamma::SparseGammaGapMultiFileLevelSetTemplate<_data_type>::putFile(const std::vector >&) [with _data_type = long long unsigned int]’ at ./libmaus2/gamma/SparseGammaGapMultiFileLevelSet.hpp:228:21: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:559:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 559 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = long long unsigned int; _Tp = std::deque; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘void libmaus2::gamma::SparseGammaGapMultiFileLevelSetTemplate<_data_type>::putFile(const std::vector >&) [with _data_type = long long unsigned int]’ at ./libmaus2/gamma/SparseGammaGapMultiFileLevelSet.hpp:232:21: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:559:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 559 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 | std::tuple<>()); | ~~~~~~~~~~~~~~~ libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplatePacTerm32.cpp -o libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplatePacTerm32.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplateCompact32.lo `test -f 'libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateCompact32.cpp' || echo './'`libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateCompact32.cpp libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateCompact32.cpp -fPIC -DPIC -o libmaus2/suffixsort/bwtb3m/.libs/la-BwtMergeSortTemplateCompact32.o In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/util/IntervalTree.hpp:25, from ./libmaus2/gamma/GammaRLDecoder.hpp:28, from ./libmaus2/gamma/GammaRLEncoder.hpp:29, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:24, from ./libmaus2/suffixsort/bwtb3m/BwtMergeComputeSampledSA.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateCompact32.cpp:20: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/suffixsort/bwtb3m/GapArrayWrapper.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeIsaParallelBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:24: ./libmaus2/util/AtomicArray.hpp: At global scope: ./libmaus2/util/AtomicArray.hpp:45:43: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 45 | AtomicArray(AtomicArray const & O) = delete; | ^~~~~~~~~~~~~~~~~ ./libmaus2/util/AtomicArray.hpp:45:43: note: remove the ‘< >’ In file included from ./libmaus2/suffixsort/bwtb3m/BwtMergeIsaParallelBase.hpp:24: ./libmaus2/suffixsort/GapArrayByte.hpp: In member function ‘void libmaus2::suffixsort::GapArrayByte::flush()’: ./libmaus2/suffixsort/GapArrayByte.hpp:134:42: warning: variable ‘overflowcnt’ set but not used [-Wunused-but-set-variable=] 134 | uint64_t overflowcnt = 0; | ^~~~~~~~~~~ In file included from ./libmaus2/suffixsort/BwtMergeTempFileNameSet.hpp:27, from ./libmaus2/suffixsort/BwtMergeBlockSortResult.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:33: ./libmaus2/util/DirectoryStructure.hpp: In member function ‘std::string libmaus2::util::DirectoryStructure::printGenerate(std::ostream&, std::string, uint64_t) const’: ./libmaus2/util/DirectoryStructure.hpp:207:58: warning: variable ‘batchcnt’ set but not used [-Wunused-but-set-variable=] 207 | uint64_t batchcnt = 0; | ^~~~~~~~ ./libmaus2/util/DirectoryStructure.hpp: In member function ‘std::string libmaus2::util::DirectoryStructure::printRemove(std::ostream&, std::string, uint64_t) const’: ./libmaus2/util/DirectoryStructure.hpp:282:58: warning: variable ‘batchcnt’ set but not used [-Wunused-but-set-variable=] 282 | uint64_t batchcnt = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:183, from ./libmaus2/huffman/CanonicalEncoder.hpp:26, from ./libmaus2/huffman/RLEncoder.hpp:25, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22: ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 2]’: ./libmaus2/huffman/HuffmanSorting.hpp:860:55: required from here 860 | huffman::EncodeTable enctable ( root ); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:188: ./libmaus2/huffman/HuffmanSorting.hpp: In instantiation of ‘static void libmaus2::huffman::HuffmanSorting::uncompressHuffmanCoded(uint64_t*, uint64_t, uint64_t, uint64_t, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::HuffmanTreeNode*, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::EncodeTable&) [with unsigned int lookupwords = 2; uint64_t = long long unsigned int]’: ./libmaus2/huffman/HuffmanSorting.hpp:1091:27: required from here 1091 | uncompressHuffmanCoded(acode.get(), 0 /* bit offset */, lowhalf /* syms */, firsthighsym, enctable,dectable,root.get(),dectable0,dectable1,enctable0,enctable1); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/huffman/HuffmanSorting.hpp:534:42: warning: variable ‘alldecoffset’ set but not used [-Wunused-but-set-variable=] 534 | uint64_t alldecoffset = highdecoffset; | ^~~~~~~~~~~~ ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 1]’: ./libmaus2/huffman/CanonicalEncoder.hpp:219:116: required from here 219 | return ::libmaus2::huffman::EncodeTable<1>::unique_ptr_type(new ::libmaus2::huffman::EncodeTable<1>(Ptree.get())); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/wavelet/RlToHwtBase.hpp:30, from ./libmaus2/wavelet/RlToHwtTermRequest.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:44: ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp: In instantiation of ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTree(libmaus2::autoarray::AutoArray&, const std::string&, const std::string&, const libmaus2::huffman::HuffmanTree*, uint64_t) [with bool radixsort = true; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’: ./libmaus2/suffixsort/BwtMergeBlockSortRequest.hpp:862:90: required from ‘libmaus2::suffixsort::BwtMergeBlockSortResult libmaus2::suffixsort::BwtMergeBlockSortRequest::sortBlock(std::ostream*) const [with input_types_type = libmaus2::suffixsort::ByteInputTypes<32>; rl_encoder = libmaus2::huffman::RLEncoderTemplate, libmaus2::bitio::FastWriteBitWriterTemplate >, 128, 255, false> > >; std::ostream = std::basic_ostream]’ 862 | ::libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTree( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 863 | UT,tmpfilenames.getHWT(),tmpfileprefix,uhnode.get(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 864 | 1/* num threads */ | ~~~~~~~~~~~~~~~~~~ 865 | ); | ~ ./libmaus2/suffixsort/BwtMergeBlockSortRequest.hpp:979:79: required from ‘std::string libmaus2::suffixsort::BwtMergeBlockSortRequest::dispatch(std::ostream*) const [with rl_encoder = libmaus2::huffman::RLEncoderTemplate, libmaus2::bitio::FastWriteBitWriterTemplate >, 128, 255, false> > >; std::string = std::__cxx11::basic_string; std::ostream = std::basic_ostream]’ 979 | result = sortBlock,rl_encoder>(logstr); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BaseBlockSortThread.hpp:128:118: required from here 128 | block->sortresult = ::libmaus2::suffixsort::BwtMergeBlockSortResult::load(block->sortreq.dispatch(logstr)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:874:90: warning: variable ‘l_numsyms0’ set but not used [-Wunused-but-set-variable=] 874 | uint64_t l_numsyms0 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:879:90: warning: variable ‘r_numsyms1’ set but not used [-Wunused-but-set-variable=] 879 | uint64_t r_numsyms1 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:755:66: warning: variable ‘numsyms1’ set but not used [-Wunused-but-set-variable=] 755 | uint64_t numsyms1 = 0; | ^~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp: In instantiation of ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRl(const std::string&, const std::string&, const std::string&, const libmaus2::huffman::HuffmanTree&, uint64_t, uint64_t) [with rl_decoder = libmaus2::huffman::RLDecoder; bool radixsort = true; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1368:123: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwt(const std::string&, const std::string&, std::string, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’ 1368 | ::libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRl( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 1369 | bwt,hwt,tmpprefix,H, | ~~~~~~~~~~~~~~~~~~~~ 1370 | utf8WaveletMaxPartMem() /* part size maximum */, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1371 | utf8WaveletMaxThreads()); | ~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:4191:65: required from ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeBwt(const libmaus2::suffixsort::bwtb3m::BwtMergeSortOptions&, std::ostream*) [with input_types_type = libmaus2::suffixsort::CompactInputTypes<32>; std::ostream = std::basic_ostream]’ 4191 | libmaus2::wavelet::RlToHwtBase::rlToHwt(options.outfn, outhwt, options.tmpfilenamebase+"_finalhwttmp",options.numthreads) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateCompact32.cpp:22:47: required from here 22 | template struct libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate< libmaus2::suffixsort::CompactInputTypes<32> >; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1419:90: warning: variable ‘l_numsyms0’ set but not used [-Wunused-but-set-variable=] 1419 | uint64_t l_numsyms0 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1424:90: warning: variable ‘r_numsyms1’ set but not used [-Wunused-but-set-variable=] 1424 | uint64_t r_numsyms1 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1299:66: warning: variable ‘numsyms1’ set but not used [-Wunused-but-set-variable=] 1299 | uint64_t numsyms1 = 0; | ^~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp: In instantiation of ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRlWithTerm(const std::vector >&, const std::string&, const std::string&, const libmaus2::huffman::HuffmanTree&, uint64_t, uint64_t, uint64_t, uint64_t) [with rl_decoder = libmaus2::huffman::RLDecoder; bool radixsort = true; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1500:131: required from ‘static void libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtTerm(const std::vector >&, const std::string&, std::string, libmaus2::huffman::HuffmanTree&, uint64_t, uint64_t, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’ 1500 | ::libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRlWithTerm( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 1501 | bwt,hwt,tmpprefix,H,p0r,bwtterm, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1502 | utf8WaveletMaxPartMem() /* maximum part size */, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1503 | utf8WaveletMaxThreads() | ~~~~~~~~~~~~~~~~~~~~~~~ 1504 | ); | ~ ./libmaus2/wavelet/RlToHwtBase.hpp:1687:17: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtTerm(const std::vector >&, const std::string&, std::string, std::string, uint64_t, uint64_t, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’ 1687 | rlToHwtTerm(bwt,hwt,tmpprefix,H,bwtterm,p0r,numthreads); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/wavelet/RlToHwtTermRequest.hpp:118:67: required from ‘libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtTermRequest::dispatch() [with rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >]’ 118 | libmaus2::wavelet::RlToHwtBase::rlToHwtTerm(bwt,hwt,tmpprefix,huftreefilename,bwtterm,p0r,numthreads) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:926:102: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::ensureWaveletTreeGenerated(const libmaus2::suffixsort::BwtMergeBlockSortResult&, std::ostream*) [with input_types_type = libmaus2::suffixsort::CompactInputTypes<32>; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::ostream = std::basic_ostream]’ 926 | libmaus2::wavelet::ImpCompactHuffmanWaveletTree::unique_ptr_type ptr(ureq->dispatch()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~ libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateCompact32.cpp:22:47: required from here 22 | template struct libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate< libmaus2::suffixsort::CompactInputTypes<32> >; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:2048:90: warning: variable ‘l_numsyms0’ set but not used [-Wunused-but-set-variable=] 2048 | uint64_t l_numsyms0 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:2053:90: warning: variable ‘r_numsyms1’ set but not used [-Wunused-but-set-variable=] 2053 | uint64_t r_numsyms1 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1929:66: warning: variable ‘numsyms1’ set but not used [-Wunused-but-set-variable=] 1929 | uint64_t numsyms1 = 0; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/16/map:64, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:51, from ./libmaus2/math/numbits.hpp:24, from ./libmaus2/huffman/IndexWriter.hpp:24, from ./libmaus2/huffman/RLEncoder.hpp:22: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h: In function ‘std::pair::rebind<_Val>::other>::pointer>::_Base_ptr, typename std::__rb_tree::_Node_traits<_Val, typename __gnu_cxx::__alloc_traits::rebind<_Val>::other>::pointer>::_Base_ptr> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(const_iterator, const key_type&) [with _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h:2952:5: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 2952 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h:3250:7: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 3250 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair::SparseGammaGapMergeInfo> >; _KeyOfValue = std::_Select1st::SparseGammaGapMergeInfo> > >; _Compare = std::less; _Alloc = std::allocator::SparseGammaGapMergeInfo> > >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h:3250:7: note: parameter passing for argument of type ‘std::_Rb_tree::SparseGammaGapMergeInfo> >, std::_Select1st::SparseGammaGapMergeInfo> > >, std::less, std::allocator::SparseGammaGapMergeInfo> > > >::const_iterator’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h:3250:7: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h:3250:7: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/16/map:65: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘virtual std::ostream& libmaus2::util::FileTempFileContainer::getOutputTempFile(uint64_t)’ at ./libmaus2/util/FileTempFileContainer.hpp:93:27: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘virtual std::istream& libmaus2::util::FileTempFileContainer::openInputTempFile(uint64_t)’ at ./libmaus2/util/FileTempFileContainer.hpp:121:17: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘virtual std::istream& libmaus2::util::FileTempFileContainer::openInputTempFile(uint64_t)’ at ./libmaus2/util/FileTempFileContainer.hpp:123:26: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/16/algorithm:63, from ./libmaus2/autoarray/AutoArray.hpp:35: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h: In function ‘constexpr void std::__pop_heap(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Compare = less]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:257:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 257 | __pop_heap(_RandomAccessIterator __first, _RandomAccessIterator __last, | ^~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:257:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:257:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::__cxx11::basic_string; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘virtual std::ostream& libmaus2::util::FileTempFileContainer::openOutputTempFile(uint64_t)’ at ./libmaus2/util/FileTempFileContainer.hpp:79:17: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::__cxx11::basic_string; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘virtual std::ostream& libmaus2::util::FileTempFileContainer::openOutputTempFile(uint64_t)’ at ./libmaus2/util/FileTempFileContainer.hpp:80:71: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::__cxx11::basic_string; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘virtual std::ostream& libmaus2::util::FileTempFileContainer::openOutputTempFile(uint64_t)’ at ./libmaus2/util/FileTempFileContainer.hpp:81:80: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘virtual std::ostream& libmaus2::util::FileTempFileContainer::openOutputTempFile(uint64_t)’ at ./libmaus2/util/FileTempFileContainer.hpp:81:18: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘virtual std::ostream& libmaus2::util::FileTempFileContainer::openOutputTempFile(uint64_t)’ at ./libmaus2/util/FileTempFileContainer.hpp:82:27: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h:3250:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 3250 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = libmaus2::suffixsort::bwtb3m::MergeStrategyBlock*; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void libmaus2::suffixsort::bwtb3m::MergeStrategyBaseBlock::fillNodeMap(std::map&)’ at ./libmaus2/suffixsort/bwtb3m/MergeStrategyBaseBlock.hpp:198:14: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = libmaus2::suffixsort::bwtb3m::MergeStrategyBlock*; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void libmaus2::suffixsort::bwtb3m::MergeStrategyMergeBlock::fillNodeMap(std::map&)’ at ./libmaus2/suffixsort/bwtb3m/MergeStrategyMergeBlock.hpp:55:14: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = libmaus2::suffixsort::bwtb3m::MergeStrategyBlock*; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void libmaus2::suffixsort::bwtb3m::MergeStrategyBaseBlock::fillNodeMap(std::map&)’ at ./libmaus2/suffixsort/bwtb3m/MergeStrategyBaseBlock.hpp:198:14, inlined from ‘virtual void libmaus2::suffixsort::bwtb3m::MergeStrategyMergeBlock::fillNodeMap(std::map&)’ at ./libmaus2/suffixsort/bwtb3m/MergeStrategyMergeBlock.hpp:58:21: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = libmaus2::suffixsort::bwtb3m::MergeStrategyBlock*; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void libmaus2::suffixsort::bwtb3m::MergeStrategyBaseBlock::fillNodeMap(std::map&)’ at ./libmaus2/suffixsort/bwtb3m/MergeStrategyBaseBlock.hpp:198:14, inlined from ‘libmaus2::suffixsort::bwtb3m::MergeTree::MergeTree(std::istream&)’ at ./libmaus2/suffixsort/bwtb3m/MergeTree.hpp:58:28, inlined from ‘bool libmaus2::suffixsort::bwtb3m::MergeTree::checkSerialisation() const’ at ./libmaus2/suffixsort/bwtb3m/MergeTree.hpp:135:32: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = libmaus2::suffixsort::bwtb3m::MergeStrategyBlock*; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void libmaus2::suffixsort::bwtb3m::MergeStrategyBaseBlock::fillNodeMap(std::map&)’ at ./libmaus2/suffixsort/bwtb3m/MergeStrategyBaseBlock.hpp:198:14, inlined from ‘libmaus2::suffixsort::bwtb3m::MergeTree::MergeTree(libmaus2::suffixsort::bwtb3m::MergeStrategyBlock::shared_ptr_type)’ at ./libmaus2/suffixsort/bwtb3m/MergeTree.hpp:49:28, inlined from ‘static std::shared_ptr libmaus2::suffixsort::bwtb3m::MergeStrategyConstruction::constructMergeTree(std::vector >, uint64_t, uint64_t, uint64_t, std::ostream*)’ at ./libmaus2/suffixsort/bwtb3m/MergeStrategyConstruction.hpp:165:54: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr::SparseGammaGapMergeInfo>; _Compare = std::less; _Alloc = std::allocator::SparseGammaGapMergeInfo> > >]’, inlined from ‘bool libmaus2::gamma::SparseGammaGapMultiFileLevelSetTemplate<_data_type>::checkMergePacket(uint64_t&, uint64_t&) [with _data_type = long long unsigned int]’ at ./libmaus2/gamma/SparseGammaGapMultiFileLevelSet.hpp:167:18: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree::SparseGammaGapMergeInfo> >, std::_Select1st::SparseGammaGapMergeInfo> > >, std::less, std::allocator::SparseGammaGapMergeInfo> > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h: In function ‘constexpr void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Distance = int; _Tp = pair; _Compare = libmaus2::sorting::MergingReadBack::HeapOrderAdapter]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:229:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 229 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr::SparseGammaGapMergeInfo>; _Compare = std::less; _Alloc = std::allocator::SparseGammaGapMergeInfo> > >]’, inlined from ‘typename libmaus2::gamma::SparseGammaGapMergeTemplate<_data_type>::SparseGammaGapMergeInfo* libmaus2::gamma::SparseGammaGapMultiFileLevelSetTemplate<_data_type>::queueMergeInfo(const libmaus2::gamma::SparseGammaGapMultiFile&, const libmaus2::gamma::SparseGammaGapMultiFile&) [with _data_type = long long unsigned int]’ at ./libmaus2/gamma/SparseGammaGapMultiFileLevelSet.hpp:197:18: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree::SparseGammaGapMergeInfo> >, std::_Select1st::SparseGammaGapMergeInfo> > >, std::less, std::allocator::SparseGammaGapMergeInfo> > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr::SparseGammaGapMergeInfo>; _Compare = std::less; _Alloc = std::allocator::SparseGammaGapMergeInfo> > >]’, inlined from ‘typename libmaus2::gamma::SparseGammaGapMergeTemplate<_data_type>::SparseGammaGapMergeInfo* libmaus2::gamma::SparseGammaGapMultiFileLevelSetTemplate<_data_type>::queueMergeInfo(const libmaus2::gamma::SparseGammaGapMultiFile&, const libmaus2::gamma::SparseGammaGapMultiFile&) [with _data_type = long long unsigned int]’ at ./libmaus2/gamma/SparseGammaGapMultiFileLevelSet.hpp:198:14: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree::SparseGammaGapMergeInfo> >, std::_Select1st::SparseGammaGapMergeInfo> > >, std::less, std::allocator::SparseGammaGapMergeInfo> > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h: In function ‘constexpr void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Distance = int; _Tp = pair; _Compare = libmaus2::sorting::SerialisingMergingReadBack >::HeapOrderAdapter]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:229:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 229 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h: In function ‘constexpr void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Distance = int; _Tp = pair; _Compare = libmaus2::sorting::SerialisingMergingReadBack::HeapOrderAdapter]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:229:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 In file included from ./libmaus2/wavelet/ImpCompactHuffmanWaveletTree.hpp:26, from ./libmaus2/lf/ImpCompactHuffmanWaveletLF.hpp:23, from ./libmaus2/suffixsort/bwtb3m/BwtMergeComputeSampledSA.hpp:24: ./libmaus2/huffman/HuffmanTree.hpp: In constructor ‘libmaus2::huffman::HuffmanTree::HuffmanTree(iterator, uint64_t, bool, bool, bool) [with iterator = std::_Rb_tree_iterator >]’: ./libmaus2/huffman/HuffmanTree.hpp:643:25: note: parameter passing for argument of type ‘std::_Rb_tree_iterator >’ changed in GCC 7.1 643 | HuffmanTree(iterator F, uint64_t const s, bool const sortbydepth = false, bool const rsetcode = false, bool const rdfsorder = false) | ^~~~~~~~~~~ In function ‘constexpr void std::pop_heap(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator > >; _Compare = less]’, inlined from ‘void std::priority_queue<_Tp, _Sequence, _Compare>::pop() [with _Tp = libmaus2::gamma::SparseGammaGapMultiFile; _Sequence = std::vector >; _Compare = std::less]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_queue.h:894:15, inlined from ‘std::vector > libmaus2::gamma::SparseGammaGapMultiFileLevelSetTemplate<_data_type>::merge(const std::string&, uint64_t) [with _data_type = long long unsigned int]’ at ./libmaus2/gamma/SparseGammaGapMultiFileLevelSet.hpp:387:30: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:334:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 334 | std::__pop_heap(__first, __last, __last, __comp); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘constexpr void std::pop_heap(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator > >; _Compare = less]’, inlined from ‘void std::priority_queue<_Tp, _Sequence, _Compare>::pop() [with _Tp = libmaus2::gamma::SparseGammaGapMultiFile; _Sequence = std::vector >; _Compare = std::less]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_queue.h:894:15, inlined from ‘std::vector > libmaus2::gamma::SparseGammaGapMultiFileLevelSetTemplate<_data_type>::merge(const std::string&, uint64_t) [with _data_type = long long unsigned int]’ at ./libmaus2/gamma/SparseGammaGapMultiFileLevelSet.hpp:388:31: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:334:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 334 | std::__pop_heap(__first, __last, __last, __comp); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘void libmaus2::suffixsort::bwtb3m::BwtMergeSortState::computeHuffmanTree()’, inlined from ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeBwt(const libmaus2::suffixsort::bwtb3m::BwtMergeSortOptions&, std::ostream*) [with input_types_type = libmaus2::suffixsort::CompactInputTypes<32>]’ at ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:3936:30: ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:552:49: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::iterator’ changed in GCC 7.1 552 | ) | ^ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h:3250:7: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 3250 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = long long unsigned int; _Tp = std::deque; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘void libmaus2::gamma::SparseGammaGapMultiFileLevelSetTemplate<_data_type>::putFile(const std::vector >&) [with _data_type = long long unsigned int]’ at ./libmaus2/gamma/SparseGammaGapMultiFileLevelSet.hpp:225:20: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:559:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 559 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = long long unsigned int; _Tp = std::deque; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘void libmaus2::gamma::SparseGammaGapMultiFileLevelSetTemplate<_data_type>::putFile(const std::vector >&) [with _data_type = long long unsigned int]’ at ./libmaus2/gamma/SparseGammaGapMultiFileLevelSet.hpp:227:22: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:559:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 559 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = long long unsigned int; _Tp = std::deque; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘void libmaus2::gamma::SparseGammaGapMultiFileLevelSetTemplate<_data_type>::putFile(const std::vector >&) [with _data_type = long long unsigned int]’ at ./libmaus2/gamma/SparseGammaGapMultiFileLevelSet.hpp:228:21: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:559:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 559 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = long long unsigned int; _Tp = std::deque; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘void libmaus2::gamma::SparseGammaGapMultiFileLevelSetTemplate<_data_type>::putFile(const std::vector >&) [with _data_type = long long unsigned int]’ at ./libmaus2/gamma/SparseGammaGapMultiFileLevelSet.hpp:232:21: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:559:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 559 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 | std::tuple<>()); | ~~~~~~~~~~~~~~~ libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateCompact32.cpp -o libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplateCompact32.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplatePac32.lo `test -f 'libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplatePac32.cpp' || echo './'`libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplatePac32.cpp libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplatePac32.cpp -fPIC -DPIC -o libmaus2/suffixsort/bwtb3m/.libs/la-BwtMergeSortTemplatePac32.o In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/util/IntervalTree.hpp:25, from ./libmaus2/gamma/GammaRLDecoder.hpp:28, from ./libmaus2/gamma/GammaRLEncoder.hpp:29, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:24, from ./libmaus2/suffixsort/bwtb3m/BwtMergeComputeSampledSA.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplatePac32.cpp:20: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/suffixsort/bwtb3m/GapArrayWrapper.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeIsaParallelBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:24: ./libmaus2/util/AtomicArray.hpp: At global scope: ./libmaus2/util/AtomicArray.hpp:45:43: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 45 | AtomicArray(AtomicArray const & O) = delete; | ^~~~~~~~~~~~~~~~~ ./libmaus2/util/AtomicArray.hpp:45:43: note: remove the ‘< >’ In file included from ./libmaus2/suffixsort/bwtb3m/BwtMergeIsaParallelBase.hpp:24: ./libmaus2/suffixsort/GapArrayByte.hpp: In member function ‘void libmaus2::suffixsort::GapArrayByte::flush()’: ./libmaus2/suffixsort/GapArrayByte.hpp:134:42: warning: variable ‘overflowcnt’ set but not used [-Wunused-but-set-variable=] 134 | uint64_t overflowcnt = 0; | ^~~~~~~~~~~ In file included from ./libmaus2/suffixsort/BwtMergeTempFileNameSet.hpp:27, from ./libmaus2/suffixsort/BwtMergeBlockSortResult.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:33: ./libmaus2/util/DirectoryStructure.hpp: In member function ‘std::string libmaus2::util::DirectoryStructure::printGenerate(std::ostream&, std::string, uint64_t) const’: ./libmaus2/util/DirectoryStructure.hpp:207:58: warning: variable ‘batchcnt’ set but not used [-Wunused-but-set-variable=] 207 | uint64_t batchcnt = 0; | ^~~~~~~~ ./libmaus2/util/DirectoryStructure.hpp: In member function ‘std::string libmaus2::util::DirectoryStructure::printRemove(std::ostream&, std::string, uint64_t) const’: ./libmaus2/util/DirectoryStructure.hpp:282:58: warning: variable ‘batchcnt’ set but not used [-Wunused-but-set-variable=] 282 | uint64_t batchcnt = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:183, from ./libmaus2/huffman/CanonicalEncoder.hpp:26, from ./libmaus2/huffman/RLEncoder.hpp:25, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22: ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 2]’: ./libmaus2/huffman/HuffmanSorting.hpp:860:55: required from here 860 | huffman::EncodeTable enctable ( root ); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:188: ./libmaus2/huffman/HuffmanSorting.hpp: In instantiation of ‘static void libmaus2::huffman::HuffmanSorting::uncompressHuffmanCoded(uint64_t*, uint64_t, uint64_t, uint64_t, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::HuffmanTreeNode*, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::EncodeTable&) [with unsigned int lookupwords = 2; uint64_t = long long unsigned int]’: ./libmaus2/huffman/HuffmanSorting.hpp:1091:27: required from here 1091 | uncompressHuffmanCoded(acode.get(), 0 /* bit offset */, lowhalf /* syms */, firsthighsym, enctable,dectable,root.get(),dectable0,dectable1,enctable0,enctable1); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/huffman/HuffmanSorting.hpp:534:42: warning: variable ‘alldecoffset’ set but not used [-Wunused-but-set-variable=] 534 | uint64_t alldecoffset = highdecoffset; | ^~~~~~~~~~~~ ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 1]’: ./libmaus2/huffman/CanonicalEncoder.hpp:219:116: required from here 219 | return ::libmaus2::huffman::EncodeTable<1>::unique_ptr_type(new ::libmaus2::huffman::EncodeTable<1>(Ptree.get())); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/wavelet/RlToHwtBase.hpp:30, from ./libmaus2/wavelet/RlToHwtTermRequest.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:44: ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp: In instantiation of ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTree(libmaus2::autoarray::AutoArray&, const std::string&, const std::string&, const libmaus2::huffman::HuffmanTree*, uint64_t) [with bool radixsort = true; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’: ./libmaus2/suffixsort/BwtMergeBlockSortRequest.hpp:862:90: required from ‘libmaus2::suffixsort::BwtMergeBlockSortResult libmaus2::suffixsort::BwtMergeBlockSortRequest::sortBlock(std::ostream*) const [with input_types_type = libmaus2::suffixsort::ByteInputTypes<32>; rl_encoder = libmaus2::huffman::RLEncoderTemplate, libmaus2::bitio::FastWriteBitWriterTemplate >, 128, 255, false> > >; std::ostream = std::basic_ostream]’ 862 | ::libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTree( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 863 | UT,tmpfilenames.getHWT(),tmpfileprefix,uhnode.get(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 864 | 1/* num threads */ | ~~~~~~~~~~~~~~~~~~ 865 | ); | ~ ./libmaus2/suffixsort/BwtMergeBlockSortRequest.hpp:979:79: required from ‘std::string libmaus2::suffixsort::BwtMergeBlockSortRequest::dispatch(std::ostream*) const [with rl_encoder = libmaus2::huffman::RLEncoderTemplate, libmaus2::bitio::FastWriteBitWriterTemplate >, 128, 255, false> > >; std::string = std::__cxx11::basic_string; std::ostream = std::basic_ostream]’ 979 | result = sortBlock,rl_encoder>(logstr); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BaseBlockSortThread.hpp:128:118: required from here 128 | block->sortresult = ::libmaus2::suffixsort::BwtMergeBlockSortResult::load(block->sortreq.dispatch(logstr)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:874:90: warning: variable ‘l_numsyms0’ set but not used [-Wunused-but-set-variable=] 874 | uint64_t l_numsyms0 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:879:90: warning: variable ‘r_numsyms1’ set but not used [-Wunused-but-set-variable=] 879 | uint64_t r_numsyms1 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:755:66: warning: variable ‘numsyms1’ set but not used [-Wunused-but-set-variable=] 755 | uint64_t numsyms1 = 0; | ^~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp: In instantiation of ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRl(const std::string&, const std::string&, const std::string&, const libmaus2::huffman::HuffmanTree&, uint64_t, uint64_t) [with rl_decoder = libmaus2::huffman::RLDecoder; bool radixsort = true; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1368:123: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwt(const std::string&, const std::string&, std::string, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’ 1368 | ::libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRl( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 1369 | bwt,hwt,tmpprefix,H, | ~~~~~~~~~~~~~~~~~~~~ 1370 | utf8WaveletMaxPartMem() /* part size maximum */, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1371 | utf8WaveletMaxThreads()); | ~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:4191:65: required from ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeBwt(const libmaus2::suffixsort::bwtb3m::BwtMergeSortOptions&, std::ostream*) [with input_types_type = libmaus2::suffixsort::PacInputTypes<32>; std::ostream = std::basic_ostream]’ 4191 | libmaus2::wavelet::RlToHwtBase::rlToHwt(options.outfn, outhwt, options.tmpfilenamebase+"_finalhwttmp",options.numthreads) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplatePac32.cpp:22:47: required from here 22 | template struct libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate< libmaus2::suffixsort::PacInputTypes<32> >; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1419:90: warning: variable ‘l_numsyms0’ set but not used [-Wunused-but-set-variable=] 1419 | uint64_t l_numsyms0 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1424:90: warning: variable ‘r_numsyms1’ set but not used [-Wunused-but-set-variable=] 1424 | uint64_t r_numsyms1 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1299:66: warning: variable ‘numsyms1’ set but not used [-Wunused-but-set-variable=] 1299 | uint64_t numsyms1 = 0; | ^~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp: In instantiation of ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRlWithTerm(const std::vector >&, const std::string&, const std::string&, const libmaus2::huffman::HuffmanTree&, uint64_t, uint64_t, uint64_t, uint64_t) [with rl_decoder = libmaus2::huffman::RLDecoder; bool radixsort = true; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1500:131: required from ‘static void libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtTerm(const std::vector >&, const std::string&, std::string, libmaus2::huffman::HuffmanTree&, uint64_t, uint64_t, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’ 1500 | ::libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRlWithTerm( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 1501 | bwt,hwt,tmpprefix,H,p0r,bwtterm, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1502 | utf8WaveletMaxPartMem() /* maximum part size */, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1503 | utf8WaveletMaxThreads() | ~~~~~~~~~~~~~~~~~~~~~~~ 1504 | ); | ~ ./libmaus2/wavelet/RlToHwtBase.hpp:1687:17: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtTerm(const std::vector >&, const std::string&, std::string, std::string, uint64_t, uint64_t, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’ 1687 | rlToHwtTerm(bwt,hwt,tmpprefix,H,bwtterm,p0r,numthreads); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/wavelet/RlToHwtTermRequest.hpp:118:67: required from ‘libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtTermRequest::dispatch() [with rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >]’ 118 | libmaus2::wavelet::RlToHwtBase::rlToHwtTerm(bwt,hwt,tmpprefix,huftreefilename,bwtterm,p0r,numthreads) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:926:102: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::ensureWaveletTreeGenerated(const libmaus2::suffixsort::BwtMergeBlockSortResult&, std::ostream*) [with input_types_type = libmaus2::suffixsort::PacInputTypes<32>; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::ostream = std::basic_ostream]’ 926 | libmaus2::wavelet::ImpCompactHuffmanWaveletTree::unique_ptr_type ptr(ureq->dispatch()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~ libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplatePac32.cpp:22:47: required from here 22 | template struct libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate< libmaus2::suffixsort::PacInputTypes<32> >; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:2048:90: warning: variable ‘l_numsyms0’ set but not used [-Wunused-but-set-variable=] 2048 | uint64_t l_numsyms0 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:2053:90: warning: variable ‘r_numsyms1’ set but not used [-Wunused-but-set-variable=] 2053 | uint64_t r_numsyms1 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1929:66: warning: variable ‘numsyms1’ set but not used [-Wunused-but-set-variable=] 1929 | uint64_t numsyms1 = 0; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/16/map:64, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:51, from ./libmaus2/math/numbits.hpp:24, from ./libmaus2/huffman/IndexWriter.hpp:24, from ./libmaus2/huffman/RLEncoder.hpp:22: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h: In function ‘std::pair::rebind<_Val>::other>::pointer>::_Base_ptr, typename std::__rb_tree::_Node_traits<_Val, typename __gnu_cxx::__alloc_traits::rebind<_Val>::other>::pointer>::_Base_ptr> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(const_iterator, const key_type&) [with _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h:2952:5: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 2952 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h:3250:7: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 3250 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair::SparseGammaGapMergeInfo> >; _KeyOfValue = std::_Select1st::SparseGammaGapMergeInfo> > >; _Compare = std::less; _Alloc = std::allocator::SparseGammaGapMergeInfo> > >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h:3250:7: note: parameter passing for argument of type ‘std::_Rb_tree::SparseGammaGapMergeInfo> >, std::_Select1st::SparseGammaGapMergeInfo> > >, std::less, std::allocator::SparseGammaGapMergeInfo> > > >::const_iterator’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h:3250:7: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h:3250:7: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/16/map:65: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘virtual std::ostream& libmaus2::util::FileTempFileContainer::getOutputTempFile(uint64_t)’ at ./libmaus2/util/FileTempFileContainer.hpp:93:27: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘virtual std::istream& libmaus2::util::FileTempFileContainer::openInputTempFile(uint64_t)’ at ./libmaus2/util/FileTempFileContainer.hpp:121:17: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘virtual std::istream& libmaus2::util::FileTempFileContainer::openInputTempFile(uint64_t)’ at ./libmaus2/util/FileTempFileContainer.hpp:123:26: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/16/algorithm:63, from ./libmaus2/autoarray/AutoArray.hpp:35: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h: In function ‘constexpr void std::__pop_heap(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Compare = less]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:257:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 257 | __pop_heap(_RandomAccessIterator __first, _RandomAccessIterator __last, | ^~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:257:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:257:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::__cxx11::basic_string; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘virtual std::ostream& libmaus2::util::FileTempFileContainer::openOutputTempFile(uint64_t)’ at ./libmaus2/util/FileTempFileContainer.hpp:79:17: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::__cxx11::basic_string; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘virtual std::ostream& libmaus2::util::FileTempFileContainer::openOutputTempFile(uint64_t)’ at ./libmaus2/util/FileTempFileContainer.hpp:80:71: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::__cxx11::basic_string; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘virtual std::ostream& libmaus2::util::FileTempFileContainer::openOutputTempFile(uint64_t)’ at ./libmaus2/util/FileTempFileContainer.hpp:81:80: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘virtual std::ostream& libmaus2::util::FileTempFileContainer::openOutputTempFile(uint64_t)’ at ./libmaus2/util/FileTempFileContainer.hpp:81:18: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘virtual std::ostream& libmaus2::util::FileTempFileContainer::openOutputTempFile(uint64_t)’ at ./libmaus2/util/FileTempFileContainer.hpp:82:27: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h:3250:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 3250 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = libmaus2::suffixsort::bwtb3m::MergeStrategyBlock*; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void libmaus2::suffixsort::bwtb3m::MergeStrategyBaseBlock::fillNodeMap(std::map&)’ at ./libmaus2/suffixsort/bwtb3m/MergeStrategyBaseBlock.hpp:198:14: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = libmaus2::suffixsort::bwtb3m::MergeStrategyBlock*; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void libmaus2::suffixsort::bwtb3m::MergeStrategyMergeBlock::fillNodeMap(std::map&)’ at ./libmaus2/suffixsort/bwtb3m/MergeStrategyMergeBlock.hpp:55:14: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = libmaus2::suffixsort::bwtb3m::MergeStrategyBlock*; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void libmaus2::suffixsort::bwtb3m::MergeStrategyBaseBlock::fillNodeMap(std::map&)’ at ./libmaus2/suffixsort/bwtb3m/MergeStrategyBaseBlock.hpp:198:14, inlined from ‘virtual void libmaus2::suffixsort::bwtb3m::MergeStrategyMergeBlock::fillNodeMap(std::map&)’ at ./libmaus2/suffixsort/bwtb3m/MergeStrategyMergeBlock.hpp:58:21: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = libmaus2::suffixsort::bwtb3m::MergeStrategyBlock*; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void libmaus2::suffixsort::bwtb3m::MergeStrategyBaseBlock::fillNodeMap(std::map&)’ at ./libmaus2/suffixsort/bwtb3m/MergeStrategyBaseBlock.hpp:198:14, inlined from ‘libmaus2::suffixsort::bwtb3m::MergeTree::MergeTree(std::istream&)’ at ./libmaus2/suffixsort/bwtb3m/MergeTree.hpp:58:28, inlined from ‘bool libmaus2::suffixsort::bwtb3m::MergeTree::checkSerialisation() const’ at ./libmaus2/suffixsort/bwtb3m/MergeTree.hpp:135:32: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = libmaus2::suffixsort::bwtb3m::MergeStrategyBlock*; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void libmaus2::suffixsort::bwtb3m::MergeStrategyBaseBlock::fillNodeMap(std::map&)’ at ./libmaus2/suffixsort/bwtb3m/MergeStrategyBaseBlock.hpp:198:14, inlined from ‘libmaus2::suffixsort::bwtb3m::MergeTree::MergeTree(libmaus2::suffixsort::bwtb3m::MergeStrategyBlock::shared_ptr_type)’ at ./libmaus2/suffixsort/bwtb3m/MergeTree.hpp:49:28, inlined from ‘static std::shared_ptr libmaus2::suffixsort::bwtb3m::MergeStrategyConstruction::constructMergeTree(std::vector >, uint64_t, uint64_t, uint64_t, std::ostream*)’ at ./libmaus2/suffixsort/bwtb3m/MergeStrategyConstruction.hpp:165:54: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr::SparseGammaGapMergeInfo>; _Compare = std::less; _Alloc = std::allocator::SparseGammaGapMergeInfo> > >]’, inlined from ‘bool libmaus2::gamma::SparseGammaGapMultiFileLevelSetTemplate<_data_type>::checkMergePacket(uint64_t&, uint64_t&) [with _data_type = long long unsigned int]’ at ./libmaus2/gamma/SparseGammaGapMultiFileLevelSet.hpp:167:18: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree::SparseGammaGapMergeInfo> >, std::_Select1st::SparseGammaGapMergeInfo> > >, std::less, std::allocator::SparseGammaGapMergeInfo> > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h: In function ‘constexpr void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Distance = int; _Tp = pair; _Compare = libmaus2::sorting::MergingReadBack::HeapOrderAdapter]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:229:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 229 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr::SparseGammaGapMergeInfo>; _Compare = std::less; _Alloc = std::allocator::SparseGammaGapMergeInfo> > >]’, inlined from ‘typename libmaus2::gamma::SparseGammaGapMergeTemplate<_data_type>::SparseGammaGapMergeInfo* libmaus2::gamma::SparseGammaGapMultiFileLevelSetTemplate<_data_type>::queueMergeInfo(const libmaus2::gamma::SparseGammaGapMultiFile&, const libmaus2::gamma::SparseGammaGapMultiFile&) [with _data_type = long long unsigned int]’ at ./libmaus2/gamma/SparseGammaGapMultiFileLevelSet.hpp:197:18: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree::SparseGammaGapMergeInfo> >, std::_Select1st::SparseGammaGapMergeInfo> > >, std::less, std::allocator::SparseGammaGapMergeInfo> > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr::SparseGammaGapMergeInfo>; _Compare = std::less; _Alloc = std::allocator::SparseGammaGapMergeInfo> > >]’, inlined from ‘typename libmaus2::gamma::SparseGammaGapMergeTemplate<_data_type>::SparseGammaGapMergeInfo* libmaus2::gamma::SparseGammaGapMultiFileLevelSetTemplate<_data_type>::queueMergeInfo(const libmaus2::gamma::SparseGammaGapMultiFile&, const libmaus2::gamma::SparseGammaGapMultiFile&) [with _data_type = long long unsigned int]’ at ./libmaus2/gamma/SparseGammaGapMultiFileLevelSet.hpp:198:14: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree::SparseGammaGapMergeInfo> >, std::_Select1st::SparseGammaGapMergeInfo> > >, std::less, std::allocator::SparseGammaGapMergeInfo> > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h: In function ‘constexpr void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Distance = int; _Tp = pair; _Compare = libmaus2::sorting::SerialisingMergingReadBack >::HeapOrderAdapter]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:229:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 229 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h: In function ‘constexpr void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Distance = int; _Tp = pair; _Compare = libmaus2::sorting::SerialisingMergingReadBack::HeapOrderAdapter]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:229:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 In file included from ./libmaus2/wavelet/ImpCompactHuffmanWaveletTree.hpp:26, from ./libmaus2/lf/ImpCompactHuffmanWaveletLF.hpp:23, from ./libmaus2/suffixsort/bwtb3m/BwtMergeComputeSampledSA.hpp:24: ./libmaus2/huffman/HuffmanTree.hpp: In constructor ‘libmaus2::huffman::HuffmanTree::HuffmanTree(iterator, uint64_t, bool, bool, bool) [with iterator = std::_Rb_tree_iterator >]’: ./libmaus2/huffman/HuffmanTree.hpp:643:25: note: parameter passing for argument of type ‘std::_Rb_tree_iterator >’ changed in GCC 7.1 643 | HuffmanTree(iterator F, uint64_t const s, bool const sortbydepth = false, bool const rsetcode = false, bool const rdfsorder = false) | ^~~~~~~~~~~ In function ‘constexpr void std::pop_heap(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator > >; _Compare = less]’, inlined from ‘void std::priority_queue<_Tp, _Sequence, _Compare>::pop() [with _Tp = libmaus2::gamma::SparseGammaGapMultiFile; _Sequence = std::vector >; _Compare = std::less]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_queue.h:894:15, inlined from ‘std::vector > libmaus2::gamma::SparseGammaGapMultiFileLevelSetTemplate<_data_type>::merge(const std::string&, uint64_t) [with _data_type = long long unsigned int]’ at ./libmaus2/gamma/SparseGammaGapMultiFileLevelSet.hpp:387:30: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:334:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 334 | std::__pop_heap(__first, __last, __last, __comp); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘constexpr void std::pop_heap(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator > >; _Compare = less]’, inlined from ‘void std::priority_queue<_Tp, _Sequence, _Compare>::pop() [with _Tp = libmaus2::gamma::SparseGammaGapMultiFile; _Sequence = std::vector >; _Compare = std::less]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_queue.h:894:15, inlined from ‘std::vector > libmaus2::gamma::SparseGammaGapMultiFileLevelSetTemplate<_data_type>::merge(const std::string&, uint64_t) [with _data_type = long long unsigned int]’ at ./libmaus2/gamma/SparseGammaGapMultiFileLevelSet.hpp:388:31: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:334:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 334 | std::__pop_heap(__first, __last, __last, __comp); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘void libmaus2::suffixsort::bwtb3m::BwtMergeSortState::computeHuffmanTree()’, inlined from ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeBwt(const libmaus2::suffixsort::bwtb3m::BwtMergeSortOptions&, std::ostream*) [with input_types_type = libmaus2::suffixsort::PacInputTypes<32>]’ at ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:3936:30: ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:552:49: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::iterator’ changed in GCC 7.1 552 | ) | ^ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h:3250:7: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 3250 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = long long unsigned int; _Tp = std::deque; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘void libmaus2::gamma::SparseGammaGapMultiFileLevelSetTemplate<_data_type>::putFile(const std::vector >&) [with _data_type = long long unsigned int]’ at ./libmaus2/gamma/SparseGammaGapMultiFileLevelSet.hpp:225:20: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:559:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 559 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = long long unsigned int; _Tp = std::deque; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘void libmaus2::gamma::SparseGammaGapMultiFileLevelSetTemplate<_data_type>::putFile(const std::vector >&) [with _data_type = long long unsigned int]’ at ./libmaus2/gamma/SparseGammaGapMultiFileLevelSet.hpp:227:22: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:559:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 559 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = long long unsigned int; _Tp = std::deque; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘void libmaus2::gamma::SparseGammaGapMultiFileLevelSetTemplate<_data_type>::putFile(const std::vector >&) [with _data_type = long long unsigned int]’ at ./libmaus2/gamma/SparseGammaGapMultiFileLevelSet.hpp:228:21: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:559:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 559 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = long long unsigned int; _Tp = std::deque; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘void libmaus2::gamma::SparseGammaGapMultiFileLevelSetTemplate<_data_type>::putFile(const std::vector >&) [with _data_type = long long unsigned int]’ at ./libmaus2/gamma/SparseGammaGapMultiFileLevelSet.hpp:232:21: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:559:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 559 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 | std::tuple<>()); | ~~~~~~~~~~~~~~~ libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplatePac32.cpp -o libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplatePac32.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplateUtf832.lo `test -f 'libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateUtf832.cpp' || echo './'`libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateUtf832.cpp libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateUtf832.cpp -fPIC -DPIC -o libmaus2/suffixsort/bwtb3m/.libs/la-BwtMergeSortTemplateUtf832.o In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/util/IntervalTree.hpp:25, from ./libmaus2/gamma/GammaRLDecoder.hpp:28, from ./libmaus2/gamma/GammaRLEncoder.hpp:29, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:24, from ./libmaus2/suffixsort/bwtb3m/BwtMergeComputeSampledSA.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateUtf832.cpp:20: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/suffixsort/bwtb3m/GapArrayWrapper.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeIsaParallelBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:24: ./libmaus2/util/AtomicArray.hpp: At global scope: ./libmaus2/util/AtomicArray.hpp:45:43: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 45 | AtomicArray(AtomicArray const & O) = delete; | ^~~~~~~~~~~~~~~~~ ./libmaus2/util/AtomicArray.hpp:45:43: note: remove the ‘< >’ In file included from ./libmaus2/suffixsort/bwtb3m/BwtMergeIsaParallelBase.hpp:24: ./libmaus2/suffixsort/GapArrayByte.hpp: In member function ‘void libmaus2::suffixsort::GapArrayByte::flush()’: ./libmaus2/suffixsort/GapArrayByte.hpp:134:42: warning: variable ‘overflowcnt’ set but not used [-Wunused-but-set-variable=] 134 | uint64_t overflowcnt = 0; | ^~~~~~~~~~~ In file included from ./libmaus2/suffixsort/BwtMergeTempFileNameSet.hpp:27, from ./libmaus2/suffixsort/BwtMergeBlockSortResult.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:33: ./libmaus2/util/DirectoryStructure.hpp: In member function ‘std::string libmaus2::util::DirectoryStructure::printGenerate(std::ostream&, std::string, uint64_t) const’: ./libmaus2/util/DirectoryStructure.hpp:207:58: warning: variable ‘batchcnt’ set but not used [-Wunused-but-set-variable=] 207 | uint64_t batchcnt = 0; | ^~~~~~~~ ./libmaus2/util/DirectoryStructure.hpp: In member function ‘std::string libmaus2::util::DirectoryStructure::printRemove(std::ostream&, std::string, uint64_t) const’: ./libmaus2/util/DirectoryStructure.hpp:282:58: warning: variable ‘batchcnt’ set but not used [-Wunused-but-set-variable=] 282 | uint64_t batchcnt = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:183, from ./libmaus2/huffman/CanonicalEncoder.hpp:26, from ./libmaus2/huffman/RLEncoder.hpp:25, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22: ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 2]’: ./libmaus2/huffman/HuffmanSorting.hpp:860:55: required from here 860 | huffman::EncodeTable enctable ( root ); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:188: ./libmaus2/huffman/HuffmanSorting.hpp: In instantiation of ‘static void libmaus2::huffman::HuffmanSorting::uncompressHuffmanCoded(uint64_t*, uint64_t, uint64_t, uint64_t, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::HuffmanTreeNode*, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::EncodeTable&) [with unsigned int lookupwords = 2; uint64_t = long long unsigned int]’: ./libmaus2/huffman/HuffmanSorting.hpp:1091:27: required from here 1091 | uncompressHuffmanCoded(acode.get(), 0 /* bit offset */, lowhalf /* syms */, firsthighsym, enctable,dectable,root.get(),dectable0,dectable1,enctable0,enctable1); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/huffman/HuffmanSorting.hpp:534:42: warning: variable ‘alldecoffset’ set but not used [-Wunused-but-set-variable=] 534 | uint64_t alldecoffset = highdecoffset; | ^~~~~~~~~~~~ ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 1]’: ./libmaus2/huffman/CanonicalEncoder.hpp:219:116: required from here 219 | return ::libmaus2::huffman::EncodeTable<1>::unique_ptr_type(new ::libmaus2::huffman::EncodeTable<1>(Ptree.get())); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/wavelet/RlToHwtBase.hpp:30, from ./libmaus2/wavelet/RlToHwtTermRequest.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:44: ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp: In instantiation of ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTree(libmaus2::autoarray::AutoArray&, const std::string&, const std::string&, const libmaus2::huffman::HuffmanTree*, uint64_t) [with bool radixsort = true; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’: ./libmaus2/suffixsort/BwtMergeBlockSortRequest.hpp:862:90: required from ‘libmaus2::suffixsort::BwtMergeBlockSortResult libmaus2::suffixsort::BwtMergeBlockSortRequest::sortBlock(std::ostream*) const [with input_types_type = libmaus2::suffixsort::ByteInputTypes<32>; rl_encoder = libmaus2::huffman::RLEncoderTemplate, libmaus2::bitio::FastWriteBitWriterTemplate >, 128, 255, false> > >; std::ostream = std::basic_ostream]’ 862 | ::libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTree( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 863 | UT,tmpfilenames.getHWT(),tmpfileprefix,uhnode.get(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 864 | 1/* num threads */ | ~~~~~~~~~~~~~~~~~~ 865 | ); | ~ ./libmaus2/suffixsort/BwtMergeBlockSortRequest.hpp:979:79: required from ‘std::string libmaus2::suffixsort::BwtMergeBlockSortRequest::dispatch(std::ostream*) const [with rl_encoder = libmaus2::huffman::RLEncoderTemplate, libmaus2::bitio::FastWriteBitWriterTemplate >, 128, 255, false> > >; std::string = std::__cxx11::basic_string; std::ostream = std::basic_ostream]’ 979 | result = sortBlock,rl_encoder>(logstr); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BaseBlockSortThread.hpp:128:118: required from here 128 | block->sortresult = ::libmaus2::suffixsort::BwtMergeBlockSortResult::load(block->sortreq.dispatch(logstr)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:874:90: warning: variable ‘l_numsyms0’ set but not used [-Wunused-but-set-variable=] 874 | uint64_t l_numsyms0 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:879:90: warning: variable ‘r_numsyms1’ set but not used [-Wunused-but-set-variable=] 879 | uint64_t r_numsyms1 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:755:66: warning: variable ‘numsyms1’ set but not used [-Wunused-but-set-variable=] 755 | uint64_t numsyms1 = 0; | ^~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp: In instantiation of ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRl(const std::string&, const std::string&, const std::string&, const libmaus2::huffman::HuffmanTree&, uint64_t, uint64_t) [with rl_decoder = libmaus2::huffman::RLDecoder; bool radixsort = true; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1368:123: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwt(const std::string&, const std::string&, std::string, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’ 1368 | ::libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRl( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 1369 | bwt,hwt,tmpprefix,H, | ~~~~~~~~~~~~~~~~~~~~ 1370 | utf8WaveletMaxPartMem() /* part size maximum */, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1371 | utf8WaveletMaxThreads()); | ~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:4191:65: required from ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeBwt(const libmaus2::suffixsort::bwtb3m::BwtMergeSortOptions&, std::ostream*) [with input_types_type = libmaus2::suffixsort::Utf8InputTypes<32>; std::ostream = std::basic_ostream]’ 4191 | libmaus2::wavelet::RlToHwtBase::rlToHwt(options.outfn, outhwt, options.tmpfilenamebase+"_finalhwttmp",options.numthreads) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateUtf832.cpp:22:47: required from here 22 | template struct libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate< libmaus2::suffixsort::Utf8InputTypes<32> >; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1419:90: warning: variable ‘l_numsyms0’ set but not used [-Wunused-but-set-variable=] 1419 | uint64_t l_numsyms0 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1424:90: warning: variable ‘r_numsyms1’ set but not used [-Wunused-but-set-variable=] 1424 | uint64_t r_numsyms1 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1299:66: warning: variable ‘numsyms1’ set but not used [-Wunused-but-set-variable=] 1299 | uint64_t numsyms1 = 0; | ^~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp: In instantiation of ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRlWithTerm(const std::vector >&, const std::string&, const std::string&, const libmaus2::huffman::HuffmanTree&, uint64_t, uint64_t, uint64_t, uint64_t) [with rl_decoder = libmaus2::huffman::RLDecoder; bool radixsort = true; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1500:131: required from ‘static void libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtTerm(const std::vector >&, const std::string&, std::string, libmaus2::huffman::HuffmanTree&, uint64_t, uint64_t, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’ 1500 | ::libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRlWithTerm( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 1501 | bwt,hwt,tmpprefix,H,p0r,bwtterm, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1502 | utf8WaveletMaxPartMem() /* maximum part size */, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1503 | utf8WaveletMaxThreads() | ~~~~~~~~~~~~~~~~~~~~~~~ 1504 | ); | ~ ./libmaus2/wavelet/RlToHwtBase.hpp:1687:17: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtTerm(const std::vector >&, const std::string&, std::string, std::string, uint64_t, uint64_t, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’ 1687 | rlToHwtTerm(bwt,hwt,tmpprefix,H,bwtterm,p0r,numthreads); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/wavelet/RlToHwtTermRequest.hpp:118:67: required from ‘libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtTermRequest::dispatch() [with rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >]’ 118 | libmaus2::wavelet::RlToHwtBase::rlToHwtTerm(bwt,hwt,tmpprefix,huftreefilename,bwtterm,p0r,numthreads) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:926:102: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::ensureWaveletTreeGenerated(const libmaus2::suffixsort::BwtMergeBlockSortResult&, std::ostream*) [with input_types_type = libmaus2::suffixsort::Utf8InputTypes<32>; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::ostream = std::basic_ostream]’ 926 | libmaus2::wavelet::ImpCompactHuffmanWaveletTree::unique_ptr_type ptr(ureq->dispatch()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~ libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateUtf832.cpp:22:47: required from here 22 | template struct libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate< libmaus2::suffixsort::Utf8InputTypes<32> >; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:2048:90: warning: variable ‘l_numsyms0’ set but not used [-Wunused-but-set-variable=] 2048 | uint64_t l_numsyms0 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:2053:90: warning: variable ‘r_numsyms1’ set but not used [-Wunused-but-set-variable=] 2053 | uint64_t r_numsyms1 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1929:66: warning: variable ‘numsyms1’ set but not used [-Wunused-but-set-variable=] 1929 | uint64_t numsyms1 = 0; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/16/map:64, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:51, from ./libmaus2/math/numbits.hpp:24, from ./libmaus2/huffman/IndexWriter.hpp:24, from ./libmaus2/huffman/RLEncoder.hpp:22: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h: In function ‘std::pair::rebind<_Val>::other>::pointer>::_Base_ptr, typename std::__rb_tree::_Node_traits<_Val, typename __gnu_cxx::__alloc_traits::rebind<_Val>::other>::pointer>::_Base_ptr> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(const_iterator, const key_type&) [with _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h:2952:5: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 2952 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h:3250:7: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 3250 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair::SparseGammaGapMergeInfo> >; _KeyOfValue = std::_Select1st::SparseGammaGapMergeInfo> > >; _Compare = std::less; _Alloc = std::allocator::SparseGammaGapMergeInfo> > >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h:3250:7: note: parameter passing for argument of type ‘std::_Rb_tree::SparseGammaGapMergeInfo> >, std::_Select1st::SparseGammaGapMergeInfo> > >, std::less, std::allocator::SparseGammaGapMergeInfo> > > >::const_iterator’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h:3250:7: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h:3250:7: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/16/map:65: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘virtual std::ostream& libmaus2::util::FileTempFileContainer::getOutputTempFile(uint64_t)’ at ./libmaus2/util/FileTempFileContainer.hpp:93:27: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘virtual std::istream& libmaus2::util::FileTempFileContainer::openInputTempFile(uint64_t)’ at ./libmaus2/util/FileTempFileContainer.hpp:121:17: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘virtual std::istream& libmaus2::util::FileTempFileContainer::openInputTempFile(uint64_t)’ at ./libmaus2/util/FileTempFileContainer.hpp:123:26: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/16/algorithm:63, from ./libmaus2/autoarray/AutoArray.hpp:35: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h: In function ‘constexpr void std::__pop_heap(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Compare = less]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:257:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 257 | __pop_heap(_RandomAccessIterator __first, _RandomAccessIterator __last, | ^~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:257:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:257:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::__cxx11::basic_string; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘virtual std::ostream& libmaus2::util::FileTempFileContainer::openOutputTempFile(uint64_t)’ at ./libmaus2/util/FileTempFileContainer.hpp:79:17: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::__cxx11::basic_string; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘virtual std::ostream& libmaus2::util::FileTempFileContainer::openOutputTempFile(uint64_t)’ at ./libmaus2/util/FileTempFileContainer.hpp:80:71: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::__cxx11::basic_string; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘virtual std::ostream& libmaus2::util::FileTempFileContainer::openOutputTempFile(uint64_t)’ at ./libmaus2/util/FileTempFileContainer.hpp:81:80: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘virtual std::ostream& libmaus2::util::FileTempFileContainer::openOutputTempFile(uint64_t)’ at ./libmaus2/util/FileTempFileContainer.hpp:81:18: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘virtual std::ostream& libmaus2::util::FileTempFileContainer::openOutputTempFile(uint64_t)’ at ./libmaus2/util/FileTempFileContainer.hpp:82:27: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h:3250:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 3250 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = libmaus2::suffixsort::bwtb3m::MergeStrategyBlock*; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void libmaus2::suffixsort::bwtb3m::MergeStrategyBaseBlock::fillNodeMap(std::map&)’ at ./libmaus2/suffixsort/bwtb3m/MergeStrategyBaseBlock.hpp:198:14: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = libmaus2::suffixsort::bwtb3m::MergeStrategyBlock*; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void libmaus2::suffixsort::bwtb3m::MergeStrategyMergeBlock::fillNodeMap(std::map&)’ at ./libmaus2/suffixsort/bwtb3m/MergeStrategyMergeBlock.hpp:55:14: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = libmaus2::suffixsort::bwtb3m::MergeStrategyBlock*; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void libmaus2::suffixsort::bwtb3m::MergeStrategyBaseBlock::fillNodeMap(std::map&)’ at ./libmaus2/suffixsort/bwtb3m/MergeStrategyBaseBlock.hpp:198:14, inlined from ‘virtual void libmaus2::suffixsort::bwtb3m::MergeStrategyMergeBlock::fillNodeMap(std::map&)’ at ./libmaus2/suffixsort/bwtb3m/MergeStrategyMergeBlock.hpp:58:21: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = libmaus2::suffixsort::bwtb3m::MergeStrategyBlock*; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void libmaus2::suffixsort::bwtb3m::MergeStrategyBaseBlock::fillNodeMap(std::map&)’ at ./libmaus2/suffixsort/bwtb3m/MergeStrategyBaseBlock.hpp:198:14, inlined from ‘libmaus2::suffixsort::bwtb3m::MergeTree::MergeTree(std::istream&)’ at ./libmaus2/suffixsort/bwtb3m/MergeTree.hpp:58:28, inlined from ‘bool libmaus2::suffixsort::bwtb3m::MergeTree::checkSerialisation() const’ at ./libmaus2/suffixsort/bwtb3m/MergeTree.hpp:135:32: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = libmaus2::suffixsort::bwtb3m::MergeStrategyBlock*; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void libmaus2::suffixsort::bwtb3m::MergeStrategyBaseBlock::fillNodeMap(std::map&)’ at ./libmaus2/suffixsort/bwtb3m/MergeStrategyBaseBlock.hpp:198:14, inlined from ‘libmaus2::suffixsort::bwtb3m::MergeTree::MergeTree(libmaus2::suffixsort::bwtb3m::MergeStrategyBlock::shared_ptr_type)’ at ./libmaus2/suffixsort/bwtb3m/MergeTree.hpp:49:28, inlined from ‘static std::shared_ptr libmaus2::suffixsort::bwtb3m::MergeStrategyConstruction::constructMergeTree(std::vector >, uint64_t, uint64_t, uint64_t, std::ostream*)’ at ./libmaus2/suffixsort/bwtb3m/MergeStrategyConstruction.hpp:165:54: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr::SparseGammaGapMergeInfo>; _Compare = std::less; _Alloc = std::allocator::SparseGammaGapMergeInfo> > >]’, inlined from ‘bool libmaus2::gamma::SparseGammaGapMultiFileLevelSetTemplate<_data_type>::checkMergePacket(uint64_t&, uint64_t&) [with _data_type = long long unsigned int]’ at ./libmaus2/gamma/SparseGammaGapMultiFileLevelSet.hpp:167:18: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree::SparseGammaGapMergeInfo> >, std::_Select1st::SparseGammaGapMergeInfo> > >, std::less, std::allocator::SparseGammaGapMergeInfo> > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h: In function ‘constexpr void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Distance = int; _Tp = pair; _Compare = libmaus2::sorting::MergingReadBack::HeapOrderAdapter]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:229:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 229 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr::SparseGammaGapMergeInfo>; _Compare = std::less; _Alloc = std::allocator::SparseGammaGapMergeInfo> > >]’, inlined from ‘typename libmaus2::gamma::SparseGammaGapMergeTemplate<_data_type>::SparseGammaGapMergeInfo* libmaus2::gamma::SparseGammaGapMultiFileLevelSetTemplate<_data_type>::queueMergeInfo(const libmaus2::gamma::SparseGammaGapMultiFile&, const libmaus2::gamma::SparseGammaGapMultiFile&) [with _data_type = long long unsigned int]’ at ./libmaus2/gamma/SparseGammaGapMultiFileLevelSet.hpp:197:18: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree::SparseGammaGapMergeInfo> >, std::_Select1st::SparseGammaGapMergeInfo> > >, std::less, std::allocator::SparseGammaGapMergeInfo> > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr::SparseGammaGapMergeInfo>; _Compare = std::less; _Alloc = std::allocator::SparseGammaGapMergeInfo> > >]’, inlined from ‘typename libmaus2::gamma::SparseGammaGapMergeTemplate<_data_type>::SparseGammaGapMergeInfo* libmaus2::gamma::SparseGammaGapMultiFileLevelSetTemplate<_data_type>::queueMergeInfo(const libmaus2::gamma::SparseGammaGapMultiFile&, const libmaus2::gamma::SparseGammaGapMultiFile&) [with _data_type = long long unsigned int]’ at ./libmaus2/gamma/SparseGammaGapMultiFileLevelSet.hpp:198:14: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree::SparseGammaGapMergeInfo> >, std::_Select1st::SparseGammaGapMergeInfo> > >, std::less, std::allocator::SparseGammaGapMergeInfo> > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h: In function ‘constexpr void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Distance = int; _Tp = pair; _Compare = libmaus2::sorting::SerialisingMergingReadBack >::HeapOrderAdapter]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:229:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 229 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h: In function ‘constexpr void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Distance = int; _Tp = pair; _Compare = libmaus2::sorting::SerialisingMergingReadBack::HeapOrderAdapter]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:229:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 In file included from ./libmaus2/wavelet/ImpCompactHuffmanWaveletTree.hpp:26, from ./libmaus2/lf/ImpCompactHuffmanWaveletLF.hpp:23, from ./libmaus2/suffixsort/bwtb3m/BwtMergeComputeSampledSA.hpp:24: ./libmaus2/huffman/HuffmanTree.hpp: In constructor ‘libmaus2::huffman::HuffmanTree::HuffmanTree(iterator, uint64_t, bool, bool, bool) [with iterator = std::_Rb_tree_iterator >]’: ./libmaus2/huffman/HuffmanTree.hpp:643:25: note: parameter passing for argument of type ‘std::_Rb_tree_iterator >’ changed in GCC 7.1 643 | HuffmanTree(iterator F, uint64_t const s, bool const sortbydepth = false, bool const rsetcode = false, bool const rdfsorder = false) | ^~~~~~~~~~~ In function ‘constexpr void std::pop_heap(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator > >; _Compare = less]’, inlined from ‘void std::priority_queue<_Tp, _Sequence, _Compare>::pop() [with _Tp = libmaus2::gamma::SparseGammaGapMultiFile; _Sequence = std::vector >; _Compare = std::less]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_queue.h:894:15, inlined from ‘std::vector > libmaus2::gamma::SparseGammaGapMultiFileLevelSetTemplate<_data_type>::merge(const std::string&, uint64_t) [with _data_type = long long unsigned int]’ at ./libmaus2/gamma/SparseGammaGapMultiFileLevelSet.hpp:387:30: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:334:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 334 | std::__pop_heap(__first, __last, __last, __comp); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘constexpr void std::pop_heap(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator > >; _Compare = less]’, inlined from ‘void std::priority_queue<_Tp, _Sequence, _Compare>::pop() [with _Tp = libmaus2::gamma::SparseGammaGapMultiFile; _Sequence = std::vector >; _Compare = std::less]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_queue.h:894:15, inlined from ‘std::vector > libmaus2::gamma::SparseGammaGapMultiFileLevelSetTemplate<_data_type>::merge(const std::string&, uint64_t) [with _data_type = long long unsigned int]’ at ./libmaus2/gamma/SparseGammaGapMultiFileLevelSet.hpp:388:31: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:334:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 334 | std::__pop_heap(__first, __last, __last, __comp); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘void libmaus2::suffixsort::bwtb3m::BwtMergeSortState::computeHuffmanTree()’, inlined from ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeBwt(const libmaus2::suffixsort::bwtb3m::BwtMergeSortOptions&, std::ostream*) [with input_types_type = libmaus2::suffixsort::Utf8InputTypes<32>]’ at ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:3936:30: ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:552:49: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::iterator’ changed in GCC 7.1 552 | ) | ^ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h:3250:7: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 3250 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = long long unsigned int; _Tp = std::deque; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘void libmaus2::gamma::SparseGammaGapMultiFileLevelSetTemplate<_data_type>::putFile(const std::vector >&) [with _data_type = long long unsigned int]’ at ./libmaus2/gamma/SparseGammaGapMultiFileLevelSet.hpp:225:20: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:559:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 559 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = long long unsigned int; _Tp = std::deque; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘void libmaus2::gamma::SparseGammaGapMultiFileLevelSetTemplate<_data_type>::putFile(const std::vector >&) [with _data_type = long long unsigned int]’ at ./libmaus2/gamma/SparseGammaGapMultiFileLevelSet.hpp:227:22: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:559:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 559 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = long long unsigned int; _Tp = std::deque; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘void libmaus2::gamma::SparseGammaGapMultiFileLevelSetTemplate<_data_type>::putFile(const std::vector >&) [with _data_type = long long unsigned int]’ at ./libmaus2/gamma/SparseGammaGapMultiFileLevelSet.hpp:228:21: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:559:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 559 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = long long unsigned int; _Tp = std::deque; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘void libmaus2::gamma::SparseGammaGapMultiFileLevelSetTemplate<_data_type>::putFile(const std::vector >&) [with _data_type = long long unsigned int]’ at ./libmaus2/gamma/SparseGammaGapMultiFileLevelSet.hpp:232:21: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:559:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 559 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 | std::tuple<>()); | ~~~~~~~~~~~~~~~ libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateUtf832.cpp -o libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplateUtf832.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplateByte64.lo `test -f 'libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateByte64.cpp' || echo './'`libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateByte64.cpp libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateByte64.cpp -fPIC -DPIC -o libmaus2/suffixsort/bwtb3m/.libs/la-BwtMergeSortTemplateByte64.o In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/util/IntervalTree.hpp:25, from ./libmaus2/gamma/GammaRLDecoder.hpp:28, from ./libmaus2/gamma/GammaRLEncoder.hpp:29, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:24, from ./libmaus2/suffixsort/bwtb3m/BwtMergeComputeSampledSA.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateByte64.cpp:20: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/suffixsort/bwtb3m/GapArrayWrapper.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeIsaParallelBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:24: ./libmaus2/util/AtomicArray.hpp: At global scope: ./libmaus2/util/AtomicArray.hpp:45:43: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 45 | AtomicArray(AtomicArray const & O) = delete; | ^~~~~~~~~~~~~~~~~ ./libmaus2/util/AtomicArray.hpp:45:43: note: remove the ‘< >’ In file included from ./libmaus2/suffixsort/bwtb3m/BwtMergeIsaParallelBase.hpp:24: ./libmaus2/suffixsort/GapArrayByte.hpp: In member function ‘void libmaus2::suffixsort::GapArrayByte::flush()’: ./libmaus2/suffixsort/GapArrayByte.hpp:134:42: warning: variable ‘overflowcnt’ set but not used [-Wunused-but-set-variable=] 134 | uint64_t overflowcnt = 0; | ^~~~~~~~~~~ In file included from ./libmaus2/suffixsort/BwtMergeTempFileNameSet.hpp:27, from ./libmaus2/suffixsort/BwtMergeBlockSortResult.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:33: ./libmaus2/util/DirectoryStructure.hpp: In member function ‘std::string libmaus2::util::DirectoryStructure::printGenerate(std::ostream&, std::string, uint64_t) const’: ./libmaus2/util/DirectoryStructure.hpp:207:58: warning: variable ‘batchcnt’ set but not used [-Wunused-but-set-variable=] 207 | uint64_t batchcnt = 0; | ^~~~~~~~ ./libmaus2/util/DirectoryStructure.hpp: In member function ‘std::string libmaus2::util::DirectoryStructure::printRemove(std::ostream&, std::string, uint64_t) const’: ./libmaus2/util/DirectoryStructure.hpp:282:58: warning: variable ‘batchcnt’ set but not used [-Wunused-but-set-variable=] 282 | uint64_t batchcnt = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:183, from ./libmaus2/huffman/CanonicalEncoder.hpp:26, from ./libmaus2/huffman/RLEncoder.hpp:25, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22: ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 2]’: ./libmaus2/huffman/HuffmanSorting.hpp:860:55: required from here 860 | huffman::EncodeTable enctable ( root ); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:188: ./libmaus2/huffman/HuffmanSorting.hpp: In instantiation of ‘static void libmaus2::huffman::HuffmanSorting::uncompressHuffmanCoded(uint64_t*, uint64_t, uint64_t, uint64_t, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::HuffmanTreeNode*, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::EncodeTable&) [with unsigned int lookupwords = 2; uint64_t = long long unsigned int]’: ./libmaus2/huffman/HuffmanSorting.hpp:1091:27: required from here 1091 | uncompressHuffmanCoded(acode.get(), 0 /* bit offset */, lowhalf /* syms */, firsthighsym, enctable,dectable,root.get(),dectable0,dectable1,enctable0,enctable1); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/huffman/HuffmanSorting.hpp:534:42: warning: variable ‘alldecoffset’ set but not used [-Wunused-but-set-variable=] 534 | uint64_t alldecoffset = highdecoffset; | ^~~~~~~~~~~~ ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 1]’: ./libmaus2/huffman/CanonicalEncoder.hpp:219:116: required from here 219 | return ::libmaus2::huffman::EncodeTable<1>::unique_ptr_type(new ::libmaus2::huffman::EncodeTable<1>(Ptree.get())); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/wavelet/RlToHwtBase.hpp:30, from ./libmaus2/wavelet/RlToHwtTermRequest.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:44: ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp: In instantiation of ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTree(libmaus2::autoarray::AutoArray&, const std::string&, const std::string&, const libmaus2::huffman::HuffmanTree*, uint64_t) [with bool radixsort = true; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’: ./libmaus2/suffixsort/BwtMergeBlockSortRequest.hpp:862:90: required from ‘libmaus2::suffixsort::BwtMergeBlockSortResult libmaus2::suffixsort::BwtMergeBlockSortRequest::sortBlock(std::ostream*) const [with input_types_type = libmaus2::suffixsort::ByteInputTypes<32>; rl_encoder = libmaus2::huffman::RLEncoderTemplate, libmaus2::bitio::FastWriteBitWriterTemplate >, 128, 255, false> > >; std::ostream = std::basic_ostream]’ 862 | ::libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTree( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 863 | UT,tmpfilenames.getHWT(),tmpfileprefix,uhnode.get(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 864 | 1/* num threads */ | ~~~~~~~~~~~~~~~~~~ 865 | ); | ~ ./libmaus2/suffixsort/BwtMergeBlockSortRequest.hpp:979:79: required from ‘std::string libmaus2::suffixsort::BwtMergeBlockSortRequest::dispatch(std::ostream*) const [with rl_encoder = libmaus2::huffman::RLEncoderTemplate, libmaus2::bitio::FastWriteBitWriterTemplate >, 128, 255, false> > >; std::string = std::__cxx11::basic_string; std::ostream = std::basic_ostream]’ 979 | result = sortBlock,rl_encoder>(logstr); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BaseBlockSortThread.hpp:128:118: required from here 128 | block->sortresult = ::libmaus2::suffixsort::BwtMergeBlockSortResult::load(block->sortreq.dispatch(logstr)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:874:90: warning: variable ‘l_numsyms0’ set but not used [-Wunused-but-set-variable=] 874 | uint64_t l_numsyms0 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:879:90: warning: variable ‘r_numsyms1’ set but not used [-Wunused-but-set-variable=] 879 | uint64_t r_numsyms1 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:755:66: warning: variable ‘numsyms1’ set but not used [-Wunused-but-set-variable=] 755 | uint64_t numsyms1 = 0; | ^~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp: In instantiation of ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRl(const std::string&, const std::string&, const std::string&, const libmaus2::huffman::HuffmanTree&, uint64_t, uint64_t) [with rl_decoder = libmaus2::huffman::RLDecoder; bool radixsort = true; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1368:123: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwt(const std::string&, const std::string&, std::string, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’ 1368 | ::libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRl( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 1369 | bwt,hwt,tmpprefix,H, | ~~~~~~~~~~~~~~~~~~~~ 1370 | utf8WaveletMaxPartMem() /* part size maximum */, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1371 | utf8WaveletMaxThreads()); | ~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:4191:65: required from ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeBwt(const libmaus2::suffixsort::bwtb3m::BwtMergeSortOptions&, std::ostream*) [with input_types_type = libmaus2::suffixsort::ByteInputTypes<64>; std::ostream = std::basic_ostream]’ 4191 | libmaus2::wavelet::RlToHwtBase::rlToHwt(options.outfn, outhwt, options.tmpfilenamebase+"_finalhwttmp",options.numthreads) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateByte64.cpp:22:47: required from here 22 | template struct libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate< libmaus2::suffixsort::ByteInputTypes<64> >; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1419:90: warning: variable ‘l_numsyms0’ set but not used [-Wunused-but-set-variable=] 1419 | uint64_t l_numsyms0 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1424:90: warning: variable ‘r_numsyms1’ set but not used [-Wunused-but-set-variable=] 1424 | uint64_t r_numsyms1 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1299:66: warning: variable ‘numsyms1’ set but not used [-Wunused-but-set-variable=] 1299 | uint64_t numsyms1 = 0; | ^~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp: In instantiation of ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRlWithTerm(const std::vector >&, const std::string&, const std::string&, const libmaus2::huffman::HuffmanTree&, uint64_t, uint64_t, uint64_t, uint64_t) [with rl_decoder = libmaus2::huffman::RLDecoder; bool radixsort = true; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1500:131: required from ‘static void libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtTerm(const std::vector >&, const std::string&, std::string, libmaus2::huffman::HuffmanTree&, uint64_t, uint64_t, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’ 1500 | ::libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRlWithTerm( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 1501 | bwt,hwt,tmpprefix,H,p0r,bwtterm, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1502 | utf8WaveletMaxPartMem() /* maximum part size */, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1503 | utf8WaveletMaxThreads() | ~~~~~~~~~~~~~~~~~~~~~~~ 1504 | ); | ~ ./libmaus2/wavelet/RlToHwtBase.hpp:1687:17: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtTerm(const std::vector >&, const std::string&, std::string, std::string, uint64_t, uint64_t, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’ 1687 | rlToHwtTerm(bwt,hwt,tmpprefix,H,bwtterm,p0r,numthreads); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/wavelet/RlToHwtTermRequest.hpp:118:67: required from ‘libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtTermRequest::dispatch() [with rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >]’ 118 | libmaus2::wavelet::RlToHwtBase::rlToHwtTerm(bwt,hwt,tmpprefix,huftreefilename,bwtterm,p0r,numthreads) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:926:102: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::ensureWaveletTreeGenerated(const libmaus2::suffixsort::BwtMergeBlockSortResult&, std::ostream*) [with input_types_type = libmaus2::suffixsort::ByteInputTypes<64>; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::ostream = std::basic_ostream]’ 926 | libmaus2::wavelet::ImpCompactHuffmanWaveletTree::unique_ptr_type ptr(ureq->dispatch()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~ libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateByte64.cpp:22:47: required from here 22 | template struct libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate< libmaus2::suffixsort::ByteInputTypes<64> >; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:2048:90: warning: variable ‘l_numsyms0’ set but not used [-Wunused-but-set-variable=] 2048 | uint64_t l_numsyms0 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:2053:90: warning: variable ‘r_numsyms1’ set but not used [-Wunused-but-set-variable=] 2053 | uint64_t r_numsyms1 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1929:66: warning: variable ‘numsyms1’ set but not used [-Wunused-but-set-variable=] 1929 | uint64_t numsyms1 = 0; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/16/map:64, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:51, from ./libmaus2/math/numbits.hpp:24, from ./libmaus2/huffman/IndexWriter.hpp:24, from ./libmaus2/huffman/RLEncoder.hpp:22: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h: In function ‘std::pair::rebind<_Val>::other>::pointer>::_Base_ptr, typename std::__rb_tree::_Node_traits<_Val, typename __gnu_cxx::__alloc_traits::rebind<_Val>::other>::pointer>::_Base_ptr> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(const_iterator, const key_type&) [with _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h:2952:5: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 2952 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h:3250:7: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 3250 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair::SparseGammaGapMergeInfo> >; _KeyOfValue = std::_Select1st::SparseGammaGapMergeInfo> > >; _Compare = std::less; _Alloc = std::allocator::SparseGammaGapMergeInfo> > >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h:3250:7: note: parameter passing for argument of type ‘std::_Rb_tree::SparseGammaGapMergeInfo> >, std::_Select1st::SparseGammaGapMergeInfo> > >, std::less, std::allocator::SparseGammaGapMergeInfo> > > >::const_iterator’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h:3250:7: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h:3250:7: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/16/map:65: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘virtual std::ostream& libmaus2::util::FileTempFileContainer::getOutputTempFile(uint64_t)’ at ./libmaus2/util/FileTempFileContainer.hpp:93:27: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘virtual std::istream& libmaus2::util::FileTempFileContainer::openInputTempFile(uint64_t)’ at ./libmaus2/util/FileTempFileContainer.hpp:121:17: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘virtual std::istream& libmaus2::util::FileTempFileContainer::openInputTempFile(uint64_t)’ at ./libmaus2/util/FileTempFileContainer.hpp:123:26: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/16/algorithm:63, from ./libmaus2/autoarray/AutoArray.hpp:35: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h: In function ‘constexpr void std::__pop_heap(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Compare = less]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:257:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 257 | __pop_heap(_RandomAccessIterator __first, _RandomAccessIterator __last, | ^~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:257:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:257:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::__cxx11::basic_string; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘virtual std::ostream& libmaus2::util::FileTempFileContainer::openOutputTempFile(uint64_t)’ at ./libmaus2/util/FileTempFileContainer.hpp:79:17: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::__cxx11::basic_string; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘virtual std::ostream& libmaus2::util::FileTempFileContainer::openOutputTempFile(uint64_t)’ at ./libmaus2/util/FileTempFileContainer.hpp:80:71: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::__cxx11::basic_string; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘virtual std::ostream& libmaus2::util::FileTempFileContainer::openOutputTempFile(uint64_t)’ at ./libmaus2/util/FileTempFileContainer.hpp:81:80: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘virtual std::ostream& libmaus2::util::FileTempFileContainer::openOutputTempFile(uint64_t)’ at ./libmaus2/util/FileTempFileContainer.hpp:81:18: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘virtual std::ostream& libmaus2::util::FileTempFileContainer::openOutputTempFile(uint64_t)’ at ./libmaus2/util/FileTempFileContainer.hpp:82:27: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h:3250:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 3250 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = libmaus2::suffixsort::bwtb3m::MergeStrategyBlock*; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void libmaus2::suffixsort::bwtb3m::MergeStrategyBaseBlock::fillNodeMap(std::map&)’ at ./libmaus2/suffixsort/bwtb3m/MergeStrategyBaseBlock.hpp:198:14: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = libmaus2::suffixsort::bwtb3m::MergeStrategyBlock*; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void libmaus2::suffixsort::bwtb3m::MergeStrategyMergeBlock::fillNodeMap(std::map&)’ at ./libmaus2/suffixsort/bwtb3m/MergeStrategyMergeBlock.hpp:55:14: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = libmaus2::suffixsort::bwtb3m::MergeStrategyBlock*; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void libmaus2::suffixsort::bwtb3m::MergeStrategyBaseBlock::fillNodeMap(std::map&)’ at ./libmaus2/suffixsort/bwtb3m/MergeStrategyBaseBlock.hpp:198:14, inlined from ‘virtual void libmaus2::suffixsort::bwtb3m::MergeStrategyMergeBlock::fillNodeMap(std::map&)’ at ./libmaus2/suffixsort/bwtb3m/MergeStrategyMergeBlock.hpp:58:21: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = libmaus2::suffixsort::bwtb3m::MergeStrategyBlock*; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void libmaus2::suffixsort::bwtb3m::MergeStrategyBaseBlock::fillNodeMap(std::map&)’ at ./libmaus2/suffixsort/bwtb3m/MergeStrategyBaseBlock.hpp:198:14, inlined from ‘libmaus2::suffixsort::bwtb3m::MergeTree::MergeTree(std::istream&)’ at ./libmaus2/suffixsort/bwtb3m/MergeTree.hpp:58:28, inlined from ‘bool libmaus2::suffixsort::bwtb3m::MergeTree::checkSerialisation() const’ at ./libmaus2/suffixsort/bwtb3m/MergeTree.hpp:135:32: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = libmaus2::suffixsort::bwtb3m::MergeStrategyBlock*; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void libmaus2::suffixsort::bwtb3m::MergeStrategyBaseBlock::fillNodeMap(std::map&)’ at ./libmaus2/suffixsort/bwtb3m/MergeStrategyBaseBlock.hpp:198:14, inlined from ‘libmaus2::suffixsort::bwtb3m::MergeTree::MergeTree(libmaus2::suffixsort::bwtb3m::MergeStrategyBlock::shared_ptr_type)’ at ./libmaus2/suffixsort/bwtb3m/MergeTree.hpp:49:28, inlined from ‘static std::shared_ptr libmaus2::suffixsort::bwtb3m::MergeStrategyConstruction::constructMergeTree(std::vector >, uint64_t, uint64_t, uint64_t, std::ostream*)’ at ./libmaus2/suffixsort/bwtb3m/MergeStrategyConstruction.hpp:165:54: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr::SparseGammaGapMergeInfo>; _Compare = std::less; _Alloc = std::allocator::SparseGammaGapMergeInfo> > >]’, inlined from ‘bool libmaus2::gamma::SparseGammaGapMultiFileLevelSetTemplate<_data_type>::checkMergePacket(uint64_t&, uint64_t&) [with _data_type = long long unsigned int]’ at ./libmaus2/gamma/SparseGammaGapMultiFileLevelSet.hpp:167:18: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree::SparseGammaGapMergeInfo> >, std::_Select1st::SparseGammaGapMergeInfo> > >, std::less, std::allocator::SparseGammaGapMergeInfo> > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h: In function ‘constexpr void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Distance = int; _Tp = pair; _Compare = libmaus2::sorting::MergingReadBack::HeapOrderAdapter]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:229:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 229 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr::SparseGammaGapMergeInfo>; _Compare = std::less; _Alloc = std::allocator::SparseGammaGapMergeInfo> > >]’, inlined from ‘typename libmaus2::gamma::SparseGammaGapMergeTemplate<_data_type>::SparseGammaGapMergeInfo* libmaus2::gamma::SparseGammaGapMultiFileLevelSetTemplate<_data_type>::queueMergeInfo(const libmaus2::gamma::SparseGammaGapMultiFile&, const libmaus2::gamma::SparseGammaGapMultiFile&) [with _data_type = long long unsigned int]’ at ./libmaus2/gamma/SparseGammaGapMultiFileLevelSet.hpp:197:18: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree::SparseGammaGapMergeInfo> >, std::_Select1st::SparseGammaGapMergeInfo> > >, std::less, std::allocator::SparseGammaGapMergeInfo> > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr::SparseGammaGapMergeInfo>; _Compare = std::less; _Alloc = std::allocator::SparseGammaGapMergeInfo> > >]’, inlined from ‘typename libmaus2::gamma::SparseGammaGapMergeTemplate<_data_type>::SparseGammaGapMergeInfo* libmaus2::gamma::SparseGammaGapMultiFileLevelSetTemplate<_data_type>::queueMergeInfo(const libmaus2::gamma::SparseGammaGapMultiFile&, const libmaus2::gamma::SparseGammaGapMultiFile&) [with _data_type = long long unsigned int]’ at ./libmaus2/gamma/SparseGammaGapMultiFileLevelSet.hpp:198:14: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree::SparseGammaGapMergeInfo> >, std::_Select1st::SparseGammaGapMergeInfo> > >, std::less, std::allocator::SparseGammaGapMergeInfo> > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h: In function ‘constexpr void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Distance = int; _Tp = pair; _Compare = libmaus2::sorting::SerialisingMergingReadBack >::HeapOrderAdapter]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:229:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 229 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h: In function ‘constexpr void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Distance = int; _Tp = pair; _Compare = libmaus2::sorting::SerialisingMergingReadBack::HeapOrderAdapter]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:229:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 In file included from ./libmaus2/wavelet/ImpCompactHuffmanWaveletTree.hpp:26, from ./libmaus2/lf/ImpCompactHuffmanWaveletLF.hpp:23, from ./libmaus2/suffixsort/bwtb3m/BwtMergeComputeSampledSA.hpp:24: ./libmaus2/huffman/HuffmanTree.hpp: In constructor ‘libmaus2::huffman::HuffmanTree::HuffmanTree(iterator, uint64_t, bool, bool, bool) [with iterator = std::_Rb_tree_iterator >]’: ./libmaus2/huffman/HuffmanTree.hpp:643:25: note: parameter passing for argument of type ‘std::_Rb_tree_iterator >’ changed in GCC 7.1 643 | HuffmanTree(iterator F, uint64_t const s, bool const sortbydepth = false, bool const rsetcode = false, bool const rdfsorder = false) | ^~~~~~~~~~~ In function ‘constexpr void std::pop_heap(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator > >; _Compare = less]’, inlined from ‘void std::priority_queue<_Tp, _Sequence, _Compare>::pop() [with _Tp = libmaus2::gamma::SparseGammaGapMultiFile; _Sequence = std::vector >; _Compare = std::less]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_queue.h:894:15, inlined from ‘std::vector > libmaus2::gamma::SparseGammaGapMultiFileLevelSetTemplate<_data_type>::merge(const std::string&, uint64_t) [with _data_type = long long unsigned int]’ at ./libmaus2/gamma/SparseGammaGapMultiFileLevelSet.hpp:387:30: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:334:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 334 | std::__pop_heap(__first, __last, __last, __comp); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘constexpr void std::pop_heap(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator > >; _Compare = less]’, inlined from ‘void std::priority_queue<_Tp, _Sequence, _Compare>::pop() [with _Tp = libmaus2::gamma::SparseGammaGapMultiFile; _Sequence = std::vector >; _Compare = std::less]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_queue.h:894:15, inlined from ‘std::vector > libmaus2::gamma::SparseGammaGapMultiFileLevelSetTemplate<_data_type>::merge(const std::string&, uint64_t) [with _data_type = long long unsigned int]’ at ./libmaus2/gamma/SparseGammaGapMultiFileLevelSet.hpp:388:31: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:334:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 334 | std::__pop_heap(__first, __last, __last, __comp); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘void libmaus2::suffixsort::bwtb3m::BwtMergeSortState::computeHuffmanTree()’, inlined from ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeBwt(const libmaus2::suffixsort::bwtb3m::BwtMergeSortOptions&, std::ostream*) [with input_types_type = libmaus2::suffixsort::ByteInputTypes<64>]’ at ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:3936:30: ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:552:49: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::iterator’ changed in GCC 7.1 552 | ) | ^ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h:3250:7: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 3250 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = long long unsigned int; _Tp = std::deque; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘void libmaus2::gamma::SparseGammaGapMultiFileLevelSetTemplate<_data_type>::putFile(const std::vector >&) [with _data_type = long long unsigned int]’ at ./libmaus2/gamma/SparseGammaGapMultiFileLevelSet.hpp:225:20: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:559:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 559 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = long long unsigned int; _Tp = std::deque; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘void libmaus2::gamma::SparseGammaGapMultiFileLevelSetTemplate<_data_type>::putFile(const std::vector >&) [with _data_type = long long unsigned int]’ at ./libmaus2/gamma/SparseGammaGapMultiFileLevelSet.hpp:227:22: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:559:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 559 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = long long unsigned int; _Tp = std::deque; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘void libmaus2::gamma::SparseGammaGapMultiFileLevelSetTemplate<_data_type>::putFile(const std::vector >&) [with _data_type = long long unsigned int]’ at ./libmaus2/gamma/SparseGammaGapMultiFileLevelSet.hpp:228:21: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:559:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 559 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = long long unsigned int; _Tp = std::deque; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘void libmaus2::gamma::SparseGammaGapMultiFileLevelSetTemplate<_data_type>::putFile(const std::vector >&) [with _data_type = long long unsigned int]’ at ./libmaus2/gamma/SparseGammaGapMultiFileLevelSet.hpp:232:21: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:559:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 559 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 | std::tuple<>()); | ~~~~~~~~~~~~~~~ libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateByte64.cpp -o libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplateByte64.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplateLz464.lo `test -f 'libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateLz464.cpp' || echo './'`libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateLz464.cpp libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateLz464.cpp -fPIC -DPIC -o libmaus2/suffixsort/bwtb3m/.libs/la-BwtMergeSortTemplateLz464.o In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/util/IntervalTree.hpp:25, from ./libmaus2/gamma/GammaRLDecoder.hpp:28, from ./libmaus2/gamma/GammaRLEncoder.hpp:29, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:24, from ./libmaus2/suffixsort/bwtb3m/BwtMergeComputeSampledSA.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateLz464.cpp:20: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/suffixsort/bwtb3m/GapArrayWrapper.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeIsaParallelBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:24: ./libmaus2/util/AtomicArray.hpp: At global scope: ./libmaus2/util/AtomicArray.hpp:45:43: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 45 | AtomicArray(AtomicArray const & O) = delete; | ^~~~~~~~~~~~~~~~~ ./libmaus2/util/AtomicArray.hpp:45:43: note: remove the ‘< >’ In file included from ./libmaus2/suffixsort/bwtb3m/BwtMergeIsaParallelBase.hpp:24: ./libmaus2/suffixsort/GapArrayByte.hpp: In member function ‘void libmaus2::suffixsort::GapArrayByte::flush()’: ./libmaus2/suffixsort/GapArrayByte.hpp:134:42: warning: variable ‘overflowcnt’ set but not used [-Wunused-but-set-variable=] 134 | uint64_t overflowcnt = 0; | ^~~~~~~~~~~ In file included from ./libmaus2/suffixsort/BwtMergeTempFileNameSet.hpp:27, from ./libmaus2/suffixsort/BwtMergeBlockSortResult.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:33: ./libmaus2/util/DirectoryStructure.hpp: In member function ‘std::string libmaus2::util::DirectoryStructure::printGenerate(std::ostream&, std::string, uint64_t) const’: ./libmaus2/util/DirectoryStructure.hpp:207:58: warning: variable ‘batchcnt’ set but not used [-Wunused-but-set-variable=] 207 | uint64_t batchcnt = 0; | ^~~~~~~~ ./libmaus2/util/DirectoryStructure.hpp: In member function ‘std::string libmaus2::util::DirectoryStructure::printRemove(std::ostream&, std::string, uint64_t) const’: ./libmaus2/util/DirectoryStructure.hpp:282:58: warning: variable ‘batchcnt’ set but not used [-Wunused-but-set-variable=] 282 | uint64_t batchcnt = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:183, from ./libmaus2/huffman/CanonicalEncoder.hpp:26, from ./libmaus2/huffman/RLEncoder.hpp:25, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22: ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 2]’: ./libmaus2/huffman/HuffmanSorting.hpp:860:55: required from here 860 | huffman::EncodeTable enctable ( root ); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:188: ./libmaus2/huffman/HuffmanSorting.hpp: In instantiation of ‘static void libmaus2::huffman::HuffmanSorting::uncompressHuffmanCoded(uint64_t*, uint64_t, uint64_t, uint64_t, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::HuffmanTreeNode*, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::EncodeTable&) [with unsigned int lookupwords = 2; uint64_t = long long unsigned int]’: ./libmaus2/huffman/HuffmanSorting.hpp:1091:27: required from here 1091 | uncompressHuffmanCoded(acode.get(), 0 /* bit offset */, lowhalf /* syms */, firsthighsym, enctable,dectable,root.get(),dectable0,dectable1,enctable0,enctable1); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/huffman/HuffmanSorting.hpp:534:42: warning: variable ‘alldecoffset’ set but not used [-Wunused-but-set-variable=] 534 | uint64_t alldecoffset = highdecoffset; | ^~~~~~~~~~~~ ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 1]’: ./libmaus2/huffman/CanonicalEncoder.hpp:219:116: required from here 219 | return ::libmaus2::huffman::EncodeTable<1>::unique_ptr_type(new ::libmaus2::huffman::EncodeTable<1>(Ptree.get())); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/wavelet/RlToHwtBase.hpp:30, from ./libmaus2/wavelet/RlToHwtTermRequest.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:44: ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp: In instantiation of ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTree(libmaus2::autoarray::AutoArray&, const std::string&, const std::string&, const libmaus2::huffman::HuffmanTree*, uint64_t) [with bool radixsort = true; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’: ./libmaus2/suffixsort/BwtMergeBlockSortRequest.hpp:862:90: required from ‘libmaus2::suffixsort::BwtMergeBlockSortResult libmaus2::suffixsort::BwtMergeBlockSortRequest::sortBlock(std::ostream*) const [with input_types_type = libmaus2::suffixsort::ByteInputTypes<32>; rl_encoder = libmaus2::huffman::RLEncoderTemplate, libmaus2::bitio::FastWriteBitWriterTemplate >, 128, 255, false> > >; std::ostream = std::basic_ostream]’ 862 | ::libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTree( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 863 | UT,tmpfilenames.getHWT(),tmpfileprefix,uhnode.get(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 864 | 1/* num threads */ | ~~~~~~~~~~~~~~~~~~ 865 | ); | ~ ./libmaus2/suffixsort/BwtMergeBlockSortRequest.hpp:979:79: required from ‘std::string libmaus2::suffixsort::BwtMergeBlockSortRequest::dispatch(std::ostream*) const [with rl_encoder = libmaus2::huffman::RLEncoderTemplate, libmaus2::bitio::FastWriteBitWriterTemplate >, 128, 255, false> > >; std::string = std::__cxx11::basic_string; std::ostream = std::basic_ostream]’ 979 | result = sortBlock,rl_encoder>(logstr); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BaseBlockSortThread.hpp:128:118: required from here 128 | block->sortresult = ::libmaus2::suffixsort::BwtMergeBlockSortResult::load(block->sortreq.dispatch(logstr)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:874:90: warning: variable ‘l_numsyms0’ set but not used [-Wunused-but-set-variable=] 874 | uint64_t l_numsyms0 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:879:90: warning: variable ‘r_numsyms1’ set but not used [-Wunused-but-set-variable=] 879 | uint64_t r_numsyms1 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:755:66: warning: variable ‘numsyms1’ set but not used [-Wunused-but-set-variable=] 755 | uint64_t numsyms1 = 0; | ^~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp: In instantiation of ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRl(const std::string&, const std::string&, const std::string&, const libmaus2::huffman::HuffmanTree&, uint64_t, uint64_t) [with rl_decoder = libmaus2::huffman::RLDecoder; bool radixsort = true; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1368:123: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwt(const std::string&, const std::string&, std::string, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’ 1368 | ::libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRl( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 1369 | bwt,hwt,tmpprefix,H, | ~~~~~~~~~~~~~~~~~~~~ 1370 | utf8WaveletMaxPartMem() /* part size maximum */, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1371 | utf8WaveletMaxThreads()); | ~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:4191:65: required from ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeBwt(const libmaus2::suffixsort::bwtb3m::BwtMergeSortOptions&, std::ostream*) [with input_types_type = libmaus2::suffixsort::Lz4InputTypes<64>; std::ostream = std::basic_ostream]’ 4191 | libmaus2::wavelet::RlToHwtBase::rlToHwt(options.outfn, outhwt, options.tmpfilenamebase+"_finalhwttmp",options.numthreads) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateLz464.cpp:22:47: required from here 22 | template struct libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate< libmaus2::suffixsort::Lz4InputTypes<64> >; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1419:90: warning: variable ‘l_numsyms0’ set but not used [-Wunused-but-set-variable=] 1419 | uint64_t l_numsyms0 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1424:90: warning: variable ‘r_numsyms1’ set but not used [-Wunused-but-set-variable=] 1424 | uint64_t r_numsyms1 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1299:66: warning: variable ‘numsyms1’ set but not used [-Wunused-but-set-variable=] 1299 | uint64_t numsyms1 = 0; | ^~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp: In instantiation of ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRlWithTerm(const std::vector >&, const std::string&, const std::string&, const libmaus2::huffman::HuffmanTree&, uint64_t, uint64_t, uint64_t, uint64_t) [with rl_decoder = libmaus2::huffman::RLDecoder; bool radixsort = true; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1500:131: required from ‘static void libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtTerm(const std::vector >&, const std::string&, std::string, libmaus2::huffman::HuffmanTree&, uint64_t, uint64_t, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’ 1500 | ::libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRlWithTerm( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 1501 | bwt,hwt,tmpprefix,H,p0r,bwtterm, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1502 | utf8WaveletMaxPartMem() /* maximum part size */, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1503 | utf8WaveletMaxThreads() | ~~~~~~~~~~~~~~~~~~~~~~~ 1504 | ); | ~ ./libmaus2/wavelet/RlToHwtBase.hpp:1687:17: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtTerm(const std::vector >&, const std::string&, std::string, std::string, uint64_t, uint64_t, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’ 1687 | rlToHwtTerm(bwt,hwt,tmpprefix,H,bwtterm,p0r,numthreads); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/wavelet/RlToHwtTermRequest.hpp:118:67: required from ‘libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtTermRequest::dispatch() [with rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >]’ 118 | libmaus2::wavelet::RlToHwtBase::rlToHwtTerm(bwt,hwt,tmpprefix,huftreefilename,bwtterm,p0r,numthreads) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:926:102: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::ensureWaveletTreeGenerated(const libmaus2::suffixsort::BwtMergeBlockSortResult&, std::ostream*) [with input_types_type = libmaus2::suffixsort::Lz4InputTypes<64>; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::ostream = std::basic_ostream]’ 926 | libmaus2::wavelet::ImpCompactHuffmanWaveletTree::unique_ptr_type ptr(ureq->dispatch()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~ libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateLz464.cpp:22:47: required from here 22 | template struct libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate< libmaus2::suffixsort::Lz4InputTypes<64> >; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:2048:90: warning: variable ‘l_numsyms0’ set but not used [-Wunused-but-set-variable=] 2048 | uint64_t l_numsyms0 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:2053:90: warning: variable ‘r_numsyms1’ set but not used [-Wunused-but-set-variable=] 2053 | uint64_t r_numsyms1 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1929:66: warning: variable ‘numsyms1’ set but not used [-Wunused-but-set-variable=] 1929 | uint64_t numsyms1 = 0; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/16/map:64, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:51, from ./libmaus2/math/numbits.hpp:24, from ./libmaus2/huffman/IndexWriter.hpp:24, from ./libmaus2/huffman/RLEncoder.hpp:22: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h: In function ‘std::pair::rebind<_Val>::other>::pointer>::_Base_ptr, typename std::__rb_tree::_Node_traits<_Val, typename __gnu_cxx::__alloc_traits::rebind<_Val>::other>::pointer>::_Base_ptr> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(const_iterator, const key_type&) [with _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h:2952:5: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 2952 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h:3250:7: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 3250 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair::SparseGammaGapMergeInfo> >; _KeyOfValue = std::_Select1st::SparseGammaGapMergeInfo> > >; _Compare = std::less; _Alloc = std::allocator::SparseGammaGapMergeInfo> > >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h:3250:7: note: parameter passing for argument of type ‘std::_Rb_tree::SparseGammaGapMergeInfo> >, std::_Select1st::SparseGammaGapMergeInfo> > >, std::less, std::allocator::SparseGammaGapMergeInfo> > > >::const_iterator’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h:3250:7: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h:3250:7: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/16/map:65: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘virtual std::ostream& libmaus2::util::FileTempFileContainer::getOutputTempFile(uint64_t)’ at ./libmaus2/util/FileTempFileContainer.hpp:93:27: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘virtual std::istream& libmaus2::util::FileTempFileContainer::openInputTempFile(uint64_t)’ at ./libmaus2/util/FileTempFileContainer.hpp:121:17: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘virtual std::istream& libmaus2::util::FileTempFileContainer::openInputTempFile(uint64_t)’ at ./libmaus2/util/FileTempFileContainer.hpp:123:26: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/16/algorithm:63, from ./libmaus2/autoarray/AutoArray.hpp:35: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h: In function ‘constexpr void std::__pop_heap(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Compare = less]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:257:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 257 | __pop_heap(_RandomAccessIterator __first, _RandomAccessIterator __last, | ^~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:257:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:257:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::__cxx11::basic_string; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘virtual std::ostream& libmaus2::util::FileTempFileContainer::openOutputTempFile(uint64_t)’ at ./libmaus2/util/FileTempFileContainer.hpp:79:17: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::__cxx11::basic_string; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘virtual std::ostream& libmaus2::util::FileTempFileContainer::openOutputTempFile(uint64_t)’ at ./libmaus2/util/FileTempFileContainer.hpp:80:71: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::__cxx11::basic_string; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘virtual std::ostream& libmaus2::util::FileTempFileContainer::openOutputTempFile(uint64_t)’ at ./libmaus2/util/FileTempFileContainer.hpp:81:80: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘virtual std::ostream& libmaus2::util::FileTempFileContainer::openOutputTempFile(uint64_t)’ at ./libmaus2/util/FileTempFileContainer.hpp:81:18: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘virtual std::ostream& libmaus2::util::FileTempFileContainer::openOutputTempFile(uint64_t)’ at ./libmaus2/util/FileTempFileContainer.hpp:82:27: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h:3250:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 3250 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = libmaus2::suffixsort::bwtb3m::MergeStrategyBlock*; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void libmaus2::suffixsort::bwtb3m::MergeStrategyBaseBlock::fillNodeMap(std::map&)’ at ./libmaus2/suffixsort/bwtb3m/MergeStrategyBaseBlock.hpp:198:14: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = libmaus2::suffixsort::bwtb3m::MergeStrategyBlock*; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void libmaus2::suffixsort::bwtb3m::MergeStrategyMergeBlock::fillNodeMap(std::map&)’ at ./libmaus2/suffixsort/bwtb3m/MergeStrategyMergeBlock.hpp:55:14: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = libmaus2::suffixsort::bwtb3m::MergeStrategyBlock*; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void libmaus2::suffixsort::bwtb3m::MergeStrategyBaseBlock::fillNodeMap(std::map&)’ at ./libmaus2/suffixsort/bwtb3m/MergeStrategyBaseBlock.hpp:198:14, inlined from ‘virtual void libmaus2::suffixsort::bwtb3m::MergeStrategyMergeBlock::fillNodeMap(std::map&)’ at ./libmaus2/suffixsort/bwtb3m/MergeStrategyMergeBlock.hpp:58:21: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = libmaus2::suffixsort::bwtb3m::MergeStrategyBlock*; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void libmaus2::suffixsort::bwtb3m::MergeStrategyBaseBlock::fillNodeMap(std::map&)’ at ./libmaus2/suffixsort/bwtb3m/MergeStrategyBaseBlock.hpp:198:14, inlined from ‘libmaus2::suffixsort::bwtb3m::MergeTree::MergeTree(std::istream&)’ at ./libmaus2/suffixsort/bwtb3m/MergeTree.hpp:58:28, inlined from ‘bool libmaus2::suffixsort::bwtb3m::MergeTree::checkSerialisation() const’ at ./libmaus2/suffixsort/bwtb3m/MergeTree.hpp:135:32: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = libmaus2::suffixsort::bwtb3m::MergeStrategyBlock*; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void libmaus2::suffixsort::bwtb3m::MergeStrategyBaseBlock::fillNodeMap(std::map&)’ at ./libmaus2/suffixsort/bwtb3m/MergeStrategyBaseBlock.hpp:198:14, inlined from ‘libmaus2::suffixsort::bwtb3m::MergeTree::MergeTree(libmaus2::suffixsort::bwtb3m::MergeStrategyBlock::shared_ptr_type)’ at ./libmaus2/suffixsort/bwtb3m/MergeTree.hpp:49:28, inlined from ‘static std::shared_ptr libmaus2::suffixsort::bwtb3m::MergeStrategyConstruction::constructMergeTree(std::vector >, uint64_t, uint64_t, uint64_t, std::ostream*)’ at ./libmaus2/suffixsort/bwtb3m/MergeStrategyConstruction.hpp:165:54: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr::SparseGammaGapMergeInfo>; _Compare = std::less; _Alloc = std::allocator::SparseGammaGapMergeInfo> > >]’, inlined from ‘bool libmaus2::gamma::SparseGammaGapMultiFileLevelSetTemplate<_data_type>::checkMergePacket(uint64_t&, uint64_t&) [with _data_type = long long unsigned int]’ at ./libmaus2/gamma/SparseGammaGapMultiFileLevelSet.hpp:167:18: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree::SparseGammaGapMergeInfo> >, std::_Select1st::SparseGammaGapMergeInfo> > >, std::less, std::allocator::SparseGammaGapMergeInfo> > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h: In function ‘constexpr void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Distance = int; _Tp = pair; _Compare = libmaus2::sorting::MergingReadBack::HeapOrderAdapter]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:229:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 229 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr::SparseGammaGapMergeInfo>; _Compare = std::less; _Alloc = std::allocator::SparseGammaGapMergeInfo> > >]’, inlined from ‘typename libmaus2::gamma::SparseGammaGapMergeTemplate<_data_type>::SparseGammaGapMergeInfo* libmaus2::gamma::SparseGammaGapMultiFileLevelSetTemplate<_data_type>::queueMergeInfo(const libmaus2::gamma::SparseGammaGapMultiFile&, const libmaus2::gamma::SparseGammaGapMultiFile&) [with _data_type = long long unsigned int]’ at ./libmaus2/gamma/SparseGammaGapMultiFileLevelSet.hpp:197:18: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree::SparseGammaGapMergeInfo> >, std::_Select1st::SparseGammaGapMergeInfo> > >, std::less, std::allocator::SparseGammaGapMergeInfo> > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr::SparseGammaGapMergeInfo>; _Compare = std::less; _Alloc = std::allocator::SparseGammaGapMergeInfo> > >]’, inlined from ‘typename libmaus2::gamma::SparseGammaGapMergeTemplate<_data_type>::SparseGammaGapMergeInfo* libmaus2::gamma::SparseGammaGapMultiFileLevelSetTemplate<_data_type>::queueMergeInfo(const libmaus2::gamma::SparseGammaGapMultiFile&, const libmaus2::gamma::SparseGammaGapMultiFile&) [with _data_type = long long unsigned int]’ at ./libmaus2/gamma/SparseGammaGapMultiFileLevelSet.hpp:198:14: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree::SparseGammaGapMergeInfo> >, std::_Select1st::SparseGammaGapMergeInfo> > >, std::less, std::allocator::SparseGammaGapMergeInfo> > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h: In function ‘constexpr void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Distance = int; _Tp = pair; _Compare = libmaus2::sorting::SerialisingMergingReadBack >::HeapOrderAdapter]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:229:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 229 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h: In function ‘constexpr void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Distance = int; _Tp = pair; _Compare = libmaus2::sorting::SerialisingMergingReadBack::HeapOrderAdapter]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:229:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 In file included from ./libmaus2/wavelet/ImpCompactHuffmanWaveletTree.hpp:26, from ./libmaus2/lf/ImpCompactHuffmanWaveletLF.hpp:23, from ./libmaus2/suffixsort/bwtb3m/BwtMergeComputeSampledSA.hpp:24: ./libmaus2/huffman/HuffmanTree.hpp: In constructor ‘libmaus2::huffman::HuffmanTree::HuffmanTree(iterator, uint64_t, bool, bool, bool) [with iterator = std::_Rb_tree_iterator >]’: ./libmaus2/huffman/HuffmanTree.hpp:643:25: note: parameter passing for argument of type ‘std::_Rb_tree_iterator >’ changed in GCC 7.1 643 | HuffmanTree(iterator F, uint64_t const s, bool const sortbydepth = false, bool const rsetcode = false, bool const rdfsorder = false) | ^~~~~~~~~~~ In function ‘constexpr void std::pop_heap(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator > >; _Compare = less]’, inlined from ‘void std::priority_queue<_Tp, _Sequence, _Compare>::pop() [with _Tp = libmaus2::gamma::SparseGammaGapMultiFile; _Sequence = std::vector >; _Compare = std::less]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_queue.h:894:15, inlined from ‘std::vector > libmaus2::gamma::SparseGammaGapMultiFileLevelSetTemplate<_data_type>::merge(const std::string&, uint64_t) [with _data_type = long long unsigned int]’ at ./libmaus2/gamma/SparseGammaGapMultiFileLevelSet.hpp:387:30: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:334:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 334 | std::__pop_heap(__first, __last, __last, __comp); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘constexpr void std::pop_heap(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator > >; _Compare = less]’, inlined from ‘void std::priority_queue<_Tp, _Sequence, _Compare>::pop() [with _Tp = libmaus2::gamma::SparseGammaGapMultiFile; _Sequence = std::vector >; _Compare = std::less]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_queue.h:894:15, inlined from ‘std::vector > libmaus2::gamma::SparseGammaGapMultiFileLevelSetTemplate<_data_type>::merge(const std::string&, uint64_t) [with _data_type = long long unsigned int]’ at ./libmaus2/gamma/SparseGammaGapMultiFileLevelSet.hpp:388:31: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:334:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 334 | std::__pop_heap(__first, __last, __last, __comp); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘void libmaus2::suffixsort::bwtb3m::BwtMergeSortState::computeHuffmanTree()’, inlined from ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeBwt(const libmaus2::suffixsort::bwtb3m::BwtMergeSortOptions&, std::ostream*) [with input_types_type = libmaus2::suffixsort::Lz4InputTypes<64>]’ at ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:3936:30: ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:552:49: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::iterator’ changed in GCC 7.1 552 | ) | ^ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h:3250:7: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 3250 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = long long unsigned int; _Tp = std::deque; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘void libmaus2::gamma::SparseGammaGapMultiFileLevelSetTemplate<_data_type>::putFile(const std::vector >&) [with _data_type = long long unsigned int]’ at ./libmaus2/gamma/SparseGammaGapMultiFileLevelSet.hpp:225:20: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:559:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 559 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = long long unsigned int; _Tp = std::deque; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘void libmaus2::gamma::SparseGammaGapMultiFileLevelSetTemplate<_data_type>::putFile(const std::vector >&) [with _data_type = long long unsigned int]’ at ./libmaus2/gamma/SparseGammaGapMultiFileLevelSet.hpp:227:22: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:559:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 559 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = long long unsigned int; _Tp = std::deque; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘void libmaus2::gamma::SparseGammaGapMultiFileLevelSetTemplate<_data_type>::putFile(const std::vector >&) [with _data_type = long long unsigned int]’ at ./libmaus2/gamma/SparseGammaGapMultiFileLevelSet.hpp:228:21: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:559:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 559 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = long long unsigned int; _Tp = std::deque; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘void libmaus2::gamma::SparseGammaGapMultiFileLevelSetTemplate<_data_type>::putFile(const std::vector >&) [with _data_type = long long unsigned int]’ at ./libmaus2/gamma/SparseGammaGapMultiFileLevelSet.hpp:232:21: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:559:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 559 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 | std::tuple<>()); | ~~~~~~~~~~~~~~~ libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateLz464.cpp -o libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplateLz464.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplatePacTerm64.lo `test -f 'libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplatePacTerm64.cpp' || echo './'`libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplatePacTerm64.cpp libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplatePacTerm64.cpp -fPIC -DPIC -o libmaus2/suffixsort/bwtb3m/.libs/la-BwtMergeSortTemplatePacTerm64.o In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/util/IntervalTree.hpp:25, from ./libmaus2/gamma/GammaRLDecoder.hpp:28, from ./libmaus2/gamma/GammaRLEncoder.hpp:29, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:24, from ./libmaus2/suffixsort/bwtb3m/BwtMergeComputeSampledSA.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplatePacTerm64.cpp:20: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/suffixsort/bwtb3m/GapArrayWrapper.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeIsaParallelBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:24: ./libmaus2/util/AtomicArray.hpp: At global scope: ./libmaus2/util/AtomicArray.hpp:45:43: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 45 | AtomicArray(AtomicArray const & O) = delete; | ^~~~~~~~~~~~~~~~~ ./libmaus2/util/AtomicArray.hpp:45:43: note: remove the ‘< >’ In file included from ./libmaus2/suffixsort/bwtb3m/BwtMergeIsaParallelBase.hpp:24: ./libmaus2/suffixsort/GapArrayByte.hpp: In member function ‘void libmaus2::suffixsort::GapArrayByte::flush()’: ./libmaus2/suffixsort/GapArrayByte.hpp:134:42: warning: variable ‘overflowcnt’ set but not used [-Wunused-but-set-variable=] 134 | uint64_t overflowcnt = 0; | ^~~~~~~~~~~ In file included from ./libmaus2/suffixsort/BwtMergeTempFileNameSet.hpp:27, from ./libmaus2/suffixsort/BwtMergeBlockSortResult.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:33: ./libmaus2/util/DirectoryStructure.hpp: In member function ‘std::string libmaus2::util::DirectoryStructure::printGenerate(std::ostream&, std::string, uint64_t) const’: ./libmaus2/util/DirectoryStructure.hpp:207:58: warning: variable ‘batchcnt’ set but not used [-Wunused-but-set-variable=] 207 | uint64_t batchcnt = 0; | ^~~~~~~~ ./libmaus2/util/DirectoryStructure.hpp: In member function ‘std::string libmaus2::util::DirectoryStructure::printRemove(std::ostream&, std::string, uint64_t) const’: ./libmaus2/util/DirectoryStructure.hpp:282:58: warning: variable ‘batchcnt’ set but not used [-Wunused-but-set-variable=] 282 | uint64_t batchcnt = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:183, from ./libmaus2/huffman/CanonicalEncoder.hpp:26, from ./libmaus2/huffman/RLEncoder.hpp:25, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22: ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 2]’: ./libmaus2/huffman/HuffmanSorting.hpp:860:55: required from here 860 | huffman::EncodeTable enctable ( root ); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:188: ./libmaus2/huffman/HuffmanSorting.hpp: In instantiation of ‘static void libmaus2::huffman::HuffmanSorting::uncompressHuffmanCoded(uint64_t*, uint64_t, uint64_t, uint64_t, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::HuffmanTreeNode*, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::EncodeTable&) [with unsigned int lookupwords = 2; uint64_t = long long unsigned int]’: ./libmaus2/huffman/HuffmanSorting.hpp:1091:27: required from here 1091 | uncompressHuffmanCoded(acode.get(), 0 /* bit offset */, lowhalf /* syms */, firsthighsym, enctable,dectable,root.get(),dectable0,dectable1,enctable0,enctable1); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/huffman/HuffmanSorting.hpp:534:42: warning: variable ‘alldecoffset’ set but not used [-Wunused-but-set-variable=] 534 | uint64_t alldecoffset = highdecoffset; | ^~~~~~~~~~~~ ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 1]’: ./libmaus2/huffman/CanonicalEncoder.hpp:219:116: required from here 219 | return ::libmaus2::huffman::EncodeTable<1>::unique_ptr_type(new ::libmaus2::huffman::EncodeTable<1>(Ptree.get())); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/wavelet/RlToHwtBase.hpp:30, from ./libmaus2/wavelet/RlToHwtTermRequest.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:44: ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp: In instantiation of ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTree(libmaus2::autoarray::AutoArray&, const std::string&, const std::string&, const libmaus2::huffman::HuffmanTree*, uint64_t) [with bool radixsort = true; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’: ./libmaus2/suffixsort/BwtMergeBlockSortRequest.hpp:862:90: required from ‘libmaus2::suffixsort::BwtMergeBlockSortResult libmaus2::suffixsort::BwtMergeBlockSortRequest::sortBlock(std::ostream*) const [with input_types_type = libmaus2::suffixsort::ByteInputTypes<32>; rl_encoder = libmaus2::huffman::RLEncoderTemplate, libmaus2::bitio::FastWriteBitWriterTemplate >, 128, 255, false> > >; std::ostream = std::basic_ostream]’ 862 | ::libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTree( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 863 | UT,tmpfilenames.getHWT(),tmpfileprefix,uhnode.get(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 864 | 1/* num threads */ | ~~~~~~~~~~~~~~~~~~ 865 | ); | ~ ./libmaus2/suffixsort/BwtMergeBlockSortRequest.hpp:979:79: required from ‘std::string libmaus2::suffixsort::BwtMergeBlockSortRequest::dispatch(std::ostream*) const [with rl_encoder = libmaus2::huffman::RLEncoderTemplate, libmaus2::bitio::FastWriteBitWriterTemplate >, 128, 255, false> > >; std::string = std::__cxx11::basic_string; std::ostream = std::basic_ostream]’ 979 | result = sortBlock,rl_encoder>(logstr); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BaseBlockSortThread.hpp:128:118: required from here 128 | block->sortresult = ::libmaus2::suffixsort::BwtMergeBlockSortResult::load(block->sortreq.dispatch(logstr)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:874:90: warning: variable ‘l_numsyms0’ set but not used [-Wunused-but-set-variable=] 874 | uint64_t l_numsyms0 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:879:90: warning: variable ‘r_numsyms1’ set but not used [-Wunused-but-set-variable=] 879 | uint64_t r_numsyms1 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:755:66: warning: variable ‘numsyms1’ set but not used [-Wunused-but-set-variable=] 755 | uint64_t numsyms1 = 0; | ^~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp: In instantiation of ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRl(const std::string&, const std::string&, const std::string&, const libmaus2::huffman::HuffmanTree&, uint64_t, uint64_t) [with rl_decoder = libmaus2::huffman::RLDecoder; bool radixsort = true; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1368:123: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwt(const std::string&, const std::string&, std::string, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’ 1368 | ::libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRl( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 1369 | bwt,hwt,tmpprefix,H, | ~~~~~~~~~~~~~~~~~~~~ 1370 | utf8WaveletMaxPartMem() /* part size maximum */, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1371 | utf8WaveletMaxThreads()); | ~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:4191:65: required from ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeBwt(const libmaus2::suffixsort::bwtb3m::BwtMergeSortOptions&, std::ostream*) [with input_types_type = libmaus2::suffixsort::PacTermInputTypes<64>; std::ostream = std::basic_ostream]’ 4191 | libmaus2::wavelet::RlToHwtBase::rlToHwt(options.outfn, outhwt, options.tmpfilenamebase+"_finalhwttmp",options.numthreads) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplatePacTerm64.cpp:22:47: required from here 22 | template struct libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate< libmaus2::suffixsort::PacTermInputTypes<64> >; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1419:90: warning: variable ‘l_numsyms0’ set but not used [-Wunused-but-set-variable=] 1419 | uint64_t l_numsyms0 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1424:90: warning: variable ‘r_numsyms1’ set but not used [-Wunused-but-set-variable=] 1424 | uint64_t r_numsyms1 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1299:66: warning: variable ‘numsyms1’ set but not used [-Wunused-but-set-variable=] 1299 | uint64_t numsyms1 = 0; | ^~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp: In instantiation of ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRlWithTerm(const std::vector >&, const std::string&, const std::string&, const libmaus2::huffman::HuffmanTree&, uint64_t, uint64_t, uint64_t, uint64_t) [with rl_decoder = libmaus2::huffman::RLDecoder; bool radixsort = true; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1500:131: required from ‘static void libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtTerm(const std::vector >&, const std::string&, std::string, libmaus2::huffman::HuffmanTree&, uint64_t, uint64_t, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’ 1500 | ::libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRlWithTerm( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 1501 | bwt,hwt,tmpprefix,H,p0r,bwtterm, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1502 | utf8WaveletMaxPartMem() /* maximum part size */, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1503 | utf8WaveletMaxThreads() | ~~~~~~~~~~~~~~~~~~~~~~~ 1504 | ); | ~ ./libmaus2/wavelet/RlToHwtBase.hpp:1687:17: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtTerm(const std::vector >&, const std::string&, std::string, std::string, uint64_t, uint64_t, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’ 1687 | rlToHwtTerm(bwt,hwt,tmpprefix,H,bwtterm,p0r,numthreads); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/wavelet/RlToHwtTermRequest.hpp:118:67: required from ‘libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtTermRequest::dispatch() [with rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >]’ 118 | libmaus2::wavelet::RlToHwtBase::rlToHwtTerm(bwt,hwt,tmpprefix,huftreefilename,bwtterm,p0r,numthreads) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:926:102: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::ensureWaveletTreeGenerated(const libmaus2::suffixsort::BwtMergeBlockSortResult&, std::ostream*) [with input_types_type = libmaus2::suffixsort::PacTermInputTypes<64>; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::ostream = std::basic_ostream]’ 926 | libmaus2::wavelet::ImpCompactHuffmanWaveletTree::unique_ptr_type ptr(ureq->dispatch()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~ libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplatePacTerm64.cpp:22:47: required from here 22 | template struct libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate< libmaus2::suffixsort::PacTermInputTypes<64> >; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:2048:90: warning: variable ‘l_numsyms0’ set but not used [-Wunused-but-set-variable=] 2048 | uint64_t l_numsyms0 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:2053:90: warning: variable ‘r_numsyms1’ set but not used [-Wunused-but-set-variable=] 2053 | uint64_t r_numsyms1 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1929:66: warning: variable ‘numsyms1’ set but not used [-Wunused-but-set-variable=] 1929 | uint64_t numsyms1 = 0; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/16/map:64, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:51, from ./libmaus2/math/numbits.hpp:24, from ./libmaus2/huffman/IndexWriter.hpp:24, from ./libmaus2/huffman/RLEncoder.hpp:22: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h: In function ‘std::pair::rebind<_Val>::other>::pointer>::_Base_ptr, typename std::__rb_tree::_Node_traits<_Val, typename __gnu_cxx::__alloc_traits::rebind<_Val>::other>::pointer>::_Base_ptr> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(const_iterator, const key_type&) [with _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h:2952:5: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 2952 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h:3250:7: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 3250 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair::SparseGammaGapMergeInfo> >; _KeyOfValue = std::_Select1st::SparseGammaGapMergeInfo> > >; _Compare = std::less; _Alloc = std::allocator::SparseGammaGapMergeInfo> > >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h:3250:7: note: parameter passing for argument of type ‘std::_Rb_tree::SparseGammaGapMergeInfo> >, std::_Select1st::SparseGammaGapMergeInfo> > >, std::less, std::allocator::SparseGammaGapMergeInfo> > > >::const_iterator’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h:3250:7: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h:3250:7: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/16/map:65: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘virtual std::ostream& libmaus2::util::FileTempFileContainer::getOutputTempFile(uint64_t)’ at ./libmaus2/util/FileTempFileContainer.hpp:93:27: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘virtual std::istream& libmaus2::util::FileTempFileContainer::openInputTempFile(uint64_t)’ at ./libmaus2/util/FileTempFileContainer.hpp:121:17: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘virtual std::istream& libmaus2::util::FileTempFileContainer::openInputTempFile(uint64_t)’ at ./libmaus2/util/FileTempFileContainer.hpp:123:26: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/16/algorithm:63, from ./libmaus2/autoarray/AutoArray.hpp:35: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h: In function ‘constexpr void std::__pop_heap(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Compare = less]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:257:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 257 | __pop_heap(_RandomAccessIterator __first, _RandomAccessIterator __last, | ^~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:257:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:257:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::__cxx11::basic_string; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘virtual std::ostream& libmaus2::util::FileTempFileContainer::openOutputTempFile(uint64_t)’ at ./libmaus2/util/FileTempFileContainer.hpp:79:17: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::__cxx11::basic_string; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘virtual std::ostream& libmaus2::util::FileTempFileContainer::openOutputTempFile(uint64_t)’ at ./libmaus2/util/FileTempFileContainer.hpp:80:71: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::__cxx11::basic_string; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘virtual std::ostream& libmaus2::util::FileTempFileContainer::openOutputTempFile(uint64_t)’ at ./libmaus2/util/FileTempFileContainer.hpp:81:80: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘virtual std::ostream& libmaus2::util::FileTempFileContainer::openOutputTempFile(uint64_t)’ at ./libmaus2/util/FileTempFileContainer.hpp:81:18: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘virtual std::ostream& libmaus2::util::FileTempFileContainer::openOutputTempFile(uint64_t)’ at ./libmaus2/util/FileTempFileContainer.hpp:82:27: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h:3250:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 3250 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = libmaus2::suffixsort::bwtb3m::MergeStrategyBlock*; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void libmaus2::suffixsort::bwtb3m::MergeStrategyBaseBlock::fillNodeMap(std::map&)’ at ./libmaus2/suffixsort/bwtb3m/MergeStrategyBaseBlock.hpp:198:14: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = libmaus2::suffixsort::bwtb3m::MergeStrategyBlock*; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void libmaus2::suffixsort::bwtb3m::MergeStrategyMergeBlock::fillNodeMap(std::map&)’ at ./libmaus2/suffixsort/bwtb3m/MergeStrategyMergeBlock.hpp:55:14: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = libmaus2::suffixsort::bwtb3m::MergeStrategyBlock*; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void libmaus2::suffixsort::bwtb3m::MergeStrategyBaseBlock::fillNodeMap(std::map&)’ at ./libmaus2/suffixsort/bwtb3m/MergeStrategyBaseBlock.hpp:198:14, inlined from ‘virtual void libmaus2::suffixsort::bwtb3m::MergeStrategyMergeBlock::fillNodeMap(std::map&)’ at ./libmaus2/suffixsort/bwtb3m/MergeStrategyMergeBlock.hpp:58:21: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = libmaus2::suffixsort::bwtb3m::MergeStrategyBlock*; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void libmaus2::suffixsort::bwtb3m::MergeStrategyBaseBlock::fillNodeMap(std::map&)’ at ./libmaus2/suffixsort/bwtb3m/MergeStrategyBaseBlock.hpp:198:14, inlined from ‘libmaus2::suffixsort::bwtb3m::MergeTree::MergeTree(std::istream&)’ at ./libmaus2/suffixsort/bwtb3m/MergeTree.hpp:58:28, inlined from ‘bool libmaus2::suffixsort::bwtb3m::MergeTree::checkSerialisation() const’ at ./libmaus2/suffixsort/bwtb3m/MergeTree.hpp:135:32: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = libmaus2::suffixsort::bwtb3m::MergeStrategyBlock*; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void libmaus2::suffixsort::bwtb3m::MergeStrategyBaseBlock::fillNodeMap(std::map&)’ at ./libmaus2/suffixsort/bwtb3m/MergeStrategyBaseBlock.hpp:198:14, inlined from ‘libmaus2::suffixsort::bwtb3m::MergeTree::MergeTree(libmaus2::suffixsort::bwtb3m::MergeStrategyBlock::shared_ptr_type)’ at ./libmaus2/suffixsort/bwtb3m/MergeTree.hpp:49:28, inlined from ‘static std::shared_ptr libmaus2::suffixsort::bwtb3m::MergeStrategyConstruction::constructMergeTree(std::vector >, uint64_t, uint64_t, uint64_t, std::ostream*)’ at ./libmaus2/suffixsort/bwtb3m/MergeStrategyConstruction.hpp:165:54: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr::SparseGammaGapMergeInfo>; _Compare = std::less; _Alloc = std::allocator::SparseGammaGapMergeInfo> > >]’, inlined from ‘bool libmaus2::gamma::SparseGammaGapMultiFileLevelSetTemplate<_data_type>::checkMergePacket(uint64_t&, uint64_t&) [with _data_type = long long unsigned int]’ at ./libmaus2/gamma/SparseGammaGapMultiFileLevelSet.hpp:167:18: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree::SparseGammaGapMergeInfo> >, std::_Select1st::SparseGammaGapMergeInfo> > >, std::less, std::allocator::SparseGammaGapMergeInfo> > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h: In function ‘constexpr void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Distance = int; _Tp = pair; _Compare = libmaus2::sorting::MergingReadBack::HeapOrderAdapter]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:229:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 229 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr::SparseGammaGapMergeInfo>; _Compare = std::less; _Alloc = std::allocator::SparseGammaGapMergeInfo> > >]’, inlined from ‘typename libmaus2::gamma::SparseGammaGapMergeTemplate<_data_type>::SparseGammaGapMergeInfo* libmaus2::gamma::SparseGammaGapMultiFileLevelSetTemplate<_data_type>::queueMergeInfo(const libmaus2::gamma::SparseGammaGapMultiFile&, const libmaus2::gamma::SparseGammaGapMultiFile&) [with _data_type = long long unsigned int]’ at ./libmaus2/gamma/SparseGammaGapMultiFileLevelSet.hpp:197:18: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree::SparseGammaGapMergeInfo> >, std::_Select1st::SparseGammaGapMergeInfo> > >, std::less, std::allocator::SparseGammaGapMergeInfo> > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr::SparseGammaGapMergeInfo>; _Compare = std::less; _Alloc = std::allocator::SparseGammaGapMergeInfo> > >]’, inlined from ‘typename libmaus2::gamma::SparseGammaGapMergeTemplate<_data_type>::SparseGammaGapMergeInfo* libmaus2::gamma::SparseGammaGapMultiFileLevelSetTemplate<_data_type>::queueMergeInfo(const libmaus2::gamma::SparseGammaGapMultiFile&, const libmaus2::gamma::SparseGammaGapMultiFile&) [with _data_type = long long unsigned int]’ at ./libmaus2/gamma/SparseGammaGapMultiFileLevelSet.hpp:198:14: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree::SparseGammaGapMergeInfo> >, std::_Select1st::SparseGammaGapMergeInfo> > >, std::less, std::allocator::SparseGammaGapMergeInfo> > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h: In function ‘constexpr void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Distance = int; _Tp = pair; _Compare = libmaus2::sorting::SerialisingMergingReadBack >::HeapOrderAdapter]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:229:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 229 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h: In function ‘constexpr void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Distance = int; _Tp = pair; _Compare = libmaus2::sorting::SerialisingMergingReadBack::HeapOrderAdapter]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:229:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 In file included from ./libmaus2/wavelet/ImpCompactHuffmanWaveletTree.hpp:26, from ./libmaus2/lf/ImpCompactHuffmanWaveletLF.hpp:23, from ./libmaus2/suffixsort/bwtb3m/BwtMergeComputeSampledSA.hpp:24: ./libmaus2/huffman/HuffmanTree.hpp: In constructor ‘libmaus2::huffman::HuffmanTree::HuffmanTree(iterator, uint64_t, bool, bool, bool) [with iterator = std::_Rb_tree_iterator >]’: ./libmaus2/huffman/HuffmanTree.hpp:643:25: note: parameter passing for argument of type ‘std::_Rb_tree_iterator >’ changed in GCC 7.1 643 | HuffmanTree(iterator F, uint64_t const s, bool const sortbydepth = false, bool const rsetcode = false, bool const rdfsorder = false) | ^~~~~~~~~~~ In function ‘constexpr void std::pop_heap(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator > >; _Compare = less]’, inlined from ‘void std::priority_queue<_Tp, _Sequence, _Compare>::pop() [with _Tp = libmaus2::gamma::SparseGammaGapMultiFile; _Sequence = std::vector >; _Compare = std::less]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_queue.h:894:15, inlined from ‘std::vector > libmaus2::gamma::SparseGammaGapMultiFileLevelSetTemplate<_data_type>::merge(const std::string&, uint64_t) [with _data_type = long long unsigned int]’ at ./libmaus2/gamma/SparseGammaGapMultiFileLevelSet.hpp:387:30: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:334:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 334 | std::__pop_heap(__first, __last, __last, __comp); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘constexpr void std::pop_heap(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator > >; _Compare = less]’, inlined from ‘void std::priority_queue<_Tp, _Sequence, _Compare>::pop() [with _Tp = libmaus2::gamma::SparseGammaGapMultiFile; _Sequence = std::vector >; _Compare = std::less]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_queue.h:894:15, inlined from ‘std::vector > libmaus2::gamma::SparseGammaGapMultiFileLevelSetTemplate<_data_type>::merge(const std::string&, uint64_t) [with _data_type = long long unsigned int]’ at ./libmaus2/gamma/SparseGammaGapMultiFileLevelSet.hpp:388:31: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:334:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 334 | std::__pop_heap(__first, __last, __last, __comp); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘void libmaus2::suffixsort::bwtb3m::BwtMergeSortState::computeHuffmanTree()’, inlined from ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeBwt(const libmaus2::suffixsort::bwtb3m::BwtMergeSortOptions&, std::ostream*) [with input_types_type = libmaus2::suffixsort::PacTermInputTypes<64>]’ at ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:3936:30: ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:552:49: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::iterator’ changed in GCC 7.1 552 | ) | ^ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h:3250:7: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 3250 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = long long unsigned int; _Tp = std::deque; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘void libmaus2::gamma::SparseGammaGapMultiFileLevelSetTemplate<_data_type>::putFile(const std::vector >&) [with _data_type = long long unsigned int]’ at ./libmaus2/gamma/SparseGammaGapMultiFileLevelSet.hpp:225:20: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:559:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 559 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = long long unsigned int; _Tp = std::deque; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘void libmaus2::gamma::SparseGammaGapMultiFileLevelSetTemplate<_data_type>::putFile(const std::vector >&) [with _data_type = long long unsigned int]’ at ./libmaus2/gamma/SparseGammaGapMultiFileLevelSet.hpp:227:22: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:559:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 559 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = long long unsigned int; _Tp = std::deque; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘void libmaus2::gamma::SparseGammaGapMultiFileLevelSetTemplate<_data_type>::putFile(const std::vector >&) [with _data_type = long long unsigned int]’ at ./libmaus2/gamma/SparseGammaGapMultiFileLevelSet.hpp:228:21: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:559:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 559 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = long long unsigned int; _Tp = std::deque; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘void libmaus2::gamma::SparseGammaGapMultiFileLevelSetTemplate<_data_type>::putFile(const std::vector >&) [with _data_type = long long unsigned int]’ at ./libmaus2/gamma/SparseGammaGapMultiFileLevelSet.hpp:232:21: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:559:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 559 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 | std::tuple<>()); | ~~~~~~~~~~~~~~~ libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplatePacTerm64.cpp -o libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplatePacTerm64.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplateCompact64.lo `test -f 'libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateCompact64.cpp' || echo './'`libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateCompact64.cpp libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateCompact64.cpp -fPIC -DPIC -o libmaus2/suffixsort/bwtb3m/.libs/la-BwtMergeSortTemplateCompact64.o In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/util/IntervalTree.hpp:25, from ./libmaus2/gamma/GammaRLDecoder.hpp:28, from ./libmaus2/gamma/GammaRLEncoder.hpp:29, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:24, from ./libmaus2/suffixsort/bwtb3m/BwtMergeComputeSampledSA.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateCompact64.cpp:20: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/suffixsort/bwtb3m/GapArrayWrapper.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeIsaParallelBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:24: ./libmaus2/util/AtomicArray.hpp: At global scope: ./libmaus2/util/AtomicArray.hpp:45:43: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 45 | AtomicArray(AtomicArray const & O) = delete; | ^~~~~~~~~~~~~~~~~ ./libmaus2/util/AtomicArray.hpp:45:43: note: remove the ‘< >’ In file included from ./libmaus2/suffixsort/bwtb3m/BwtMergeIsaParallelBase.hpp:24: ./libmaus2/suffixsort/GapArrayByte.hpp: In member function ‘void libmaus2::suffixsort::GapArrayByte::flush()’: ./libmaus2/suffixsort/GapArrayByte.hpp:134:42: warning: variable ‘overflowcnt’ set but not used [-Wunused-but-set-variable=] 134 | uint64_t overflowcnt = 0; | ^~~~~~~~~~~ In file included from ./libmaus2/suffixsort/BwtMergeTempFileNameSet.hpp:27, from ./libmaus2/suffixsort/BwtMergeBlockSortResult.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:33: ./libmaus2/util/DirectoryStructure.hpp: In member function ‘std::string libmaus2::util::DirectoryStructure::printGenerate(std::ostream&, std::string, uint64_t) const’: ./libmaus2/util/DirectoryStructure.hpp:207:58: warning: variable ‘batchcnt’ set but not used [-Wunused-but-set-variable=] 207 | uint64_t batchcnt = 0; | ^~~~~~~~ ./libmaus2/util/DirectoryStructure.hpp: In member function ‘std::string libmaus2::util::DirectoryStructure::printRemove(std::ostream&, std::string, uint64_t) const’: ./libmaus2/util/DirectoryStructure.hpp:282:58: warning: variable ‘batchcnt’ set but not used [-Wunused-but-set-variable=] 282 | uint64_t batchcnt = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:183, from ./libmaus2/huffman/CanonicalEncoder.hpp:26, from ./libmaus2/huffman/RLEncoder.hpp:25, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22: ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 2]’: ./libmaus2/huffman/HuffmanSorting.hpp:860:55: required from here 860 | huffman::EncodeTable enctable ( root ); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:188: ./libmaus2/huffman/HuffmanSorting.hpp: In instantiation of ‘static void libmaus2::huffman::HuffmanSorting::uncompressHuffmanCoded(uint64_t*, uint64_t, uint64_t, uint64_t, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::HuffmanTreeNode*, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::EncodeTable&) [with unsigned int lookupwords = 2; uint64_t = long long unsigned int]’: ./libmaus2/huffman/HuffmanSorting.hpp:1091:27: required from here 1091 | uncompressHuffmanCoded(acode.get(), 0 /* bit offset */, lowhalf /* syms */, firsthighsym, enctable,dectable,root.get(),dectable0,dectable1,enctable0,enctable1); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/huffman/HuffmanSorting.hpp:534:42: warning: variable ‘alldecoffset’ set but not used [-Wunused-but-set-variable=] 534 | uint64_t alldecoffset = highdecoffset; | ^~~~~~~~~~~~ ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 1]’: ./libmaus2/huffman/CanonicalEncoder.hpp:219:116: required from here 219 | return ::libmaus2::huffman::EncodeTable<1>::unique_ptr_type(new ::libmaus2::huffman::EncodeTable<1>(Ptree.get())); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/wavelet/RlToHwtBase.hpp:30, from ./libmaus2/wavelet/RlToHwtTermRequest.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:44: ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp: In instantiation of ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTree(libmaus2::autoarray::AutoArray&, const std::string&, const std::string&, const libmaus2::huffman::HuffmanTree*, uint64_t) [with bool radixsort = true; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’: ./libmaus2/suffixsort/BwtMergeBlockSortRequest.hpp:862:90: required from ‘libmaus2::suffixsort::BwtMergeBlockSortResult libmaus2::suffixsort::BwtMergeBlockSortRequest::sortBlock(std::ostream*) const [with input_types_type = libmaus2::suffixsort::ByteInputTypes<32>; rl_encoder = libmaus2::huffman::RLEncoderTemplate, libmaus2::bitio::FastWriteBitWriterTemplate >, 128, 255, false> > >; std::ostream = std::basic_ostream]’ 862 | ::libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTree( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 863 | UT,tmpfilenames.getHWT(),tmpfileprefix,uhnode.get(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 864 | 1/* num threads */ | ~~~~~~~~~~~~~~~~~~ 865 | ); | ~ ./libmaus2/suffixsort/BwtMergeBlockSortRequest.hpp:979:79: required from ‘std::string libmaus2::suffixsort::BwtMergeBlockSortRequest::dispatch(std::ostream*) const [with rl_encoder = libmaus2::huffman::RLEncoderTemplate, libmaus2::bitio::FastWriteBitWriterTemplate >, 128, 255, false> > >; std::string = std::__cxx11::basic_string; std::ostream = std::basic_ostream]’ 979 | result = sortBlock,rl_encoder>(logstr); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BaseBlockSortThread.hpp:128:118: required from here 128 | block->sortresult = ::libmaus2::suffixsort::BwtMergeBlockSortResult::load(block->sortreq.dispatch(logstr)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:874:90: warning: variable ‘l_numsyms0’ set but not used [-Wunused-but-set-variable=] 874 | uint64_t l_numsyms0 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:879:90: warning: variable ‘r_numsyms1’ set but not used [-Wunused-but-set-variable=] 879 | uint64_t r_numsyms1 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:755:66: warning: variable ‘numsyms1’ set but not used [-Wunused-but-set-variable=] 755 | uint64_t numsyms1 = 0; | ^~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp: In instantiation of ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRl(const std::string&, const std::string&, const std::string&, const libmaus2::huffman::HuffmanTree&, uint64_t, uint64_t) [with rl_decoder = libmaus2::huffman::RLDecoder; bool radixsort = true; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1368:123: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwt(const std::string&, const std::string&, std::string, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’ 1368 | ::libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRl( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 1369 | bwt,hwt,tmpprefix,H, | ~~~~~~~~~~~~~~~~~~~~ 1370 | utf8WaveletMaxPartMem() /* part size maximum */, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1371 | utf8WaveletMaxThreads()); | ~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:4191:65: required from ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeBwt(const libmaus2::suffixsort::bwtb3m::BwtMergeSortOptions&, std::ostream*) [with input_types_type = libmaus2::suffixsort::CompactInputTypes<64>; std::ostream = std::basic_ostream]’ 4191 | libmaus2::wavelet::RlToHwtBase::rlToHwt(options.outfn, outhwt, options.tmpfilenamebase+"_finalhwttmp",options.numthreads) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateCompact64.cpp:22:47: required from here 22 | template struct libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate< libmaus2::suffixsort::CompactInputTypes<64> >; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1419:90: warning: variable ‘l_numsyms0’ set but not used [-Wunused-but-set-variable=] 1419 | uint64_t l_numsyms0 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1424:90: warning: variable ‘r_numsyms1’ set but not used [-Wunused-but-set-variable=] 1424 | uint64_t r_numsyms1 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1299:66: warning: variable ‘numsyms1’ set but not used [-Wunused-but-set-variable=] 1299 | uint64_t numsyms1 = 0; | ^~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp: In instantiation of ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRlWithTerm(const std::vector >&, const std::string&, const std::string&, const libmaus2::huffman::HuffmanTree&, uint64_t, uint64_t, uint64_t, uint64_t) [with rl_decoder = libmaus2::huffman::RLDecoder; bool radixsort = true; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1500:131: required from ‘static void libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtTerm(const std::vector >&, const std::string&, std::string, libmaus2::huffman::HuffmanTree&, uint64_t, uint64_t, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’ 1500 | ::libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRlWithTerm( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 1501 | bwt,hwt,tmpprefix,H,p0r,bwtterm, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1502 | utf8WaveletMaxPartMem() /* maximum part size */, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1503 | utf8WaveletMaxThreads() | ~~~~~~~~~~~~~~~~~~~~~~~ 1504 | ); | ~ ./libmaus2/wavelet/RlToHwtBase.hpp:1687:17: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtTerm(const std::vector >&, const std::string&, std::string, std::string, uint64_t, uint64_t, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’ 1687 | rlToHwtTerm(bwt,hwt,tmpprefix,H,bwtterm,p0r,numthreads); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/wavelet/RlToHwtTermRequest.hpp:118:67: required from ‘libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtTermRequest::dispatch() [with rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >]’ 118 | libmaus2::wavelet::RlToHwtBase::rlToHwtTerm(bwt,hwt,tmpprefix,huftreefilename,bwtterm,p0r,numthreads) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:926:102: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::ensureWaveletTreeGenerated(const libmaus2::suffixsort::BwtMergeBlockSortResult&, std::ostream*) [with input_types_type = libmaus2::suffixsort::CompactInputTypes<64>; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::ostream = std::basic_ostream]’ 926 | libmaus2::wavelet::ImpCompactHuffmanWaveletTree::unique_ptr_type ptr(ureq->dispatch()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~ libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateCompact64.cpp:22:47: required from here 22 | template struct libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate< libmaus2::suffixsort::CompactInputTypes<64> >; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:2048:90: warning: variable ‘l_numsyms0’ set but not used [-Wunused-but-set-variable=] 2048 | uint64_t l_numsyms0 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:2053:90: warning: variable ‘r_numsyms1’ set but not used [-Wunused-but-set-variable=] 2053 | uint64_t r_numsyms1 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1929:66: warning: variable ‘numsyms1’ set but not used [-Wunused-but-set-variable=] 1929 | uint64_t numsyms1 = 0; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/16/map:64, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:51, from ./libmaus2/math/numbits.hpp:24, from ./libmaus2/huffman/IndexWriter.hpp:24, from ./libmaus2/huffman/RLEncoder.hpp:22: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h: In function ‘std::pair::rebind<_Val>::other>::pointer>::_Base_ptr, typename std::__rb_tree::_Node_traits<_Val, typename __gnu_cxx::__alloc_traits::rebind<_Val>::other>::pointer>::_Base_ptr> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(const_iterator, const key_type&) [with _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h:2952:5: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 2952 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h:3250:7: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 3250 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair::SparseGammaGapMergeInfo> >; _KeyOfValue = std::_Select1st::SparseGammaGapMergeInfo> > >; _Compare = std::less; _Alloc = std::allocator::SparseGammaGapMergeInfo> > >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h:3250:7: note: parameter passing for argument of type ‘std::_Rb_tree::SparseGammaGapMergeInfo> >, std::_Select1st::SparseGammaGapMergeInfo> > >, std::less, std::allocator::SparseGammaGapMergeInfo> > > >::const_iterator’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h:3250:7: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h:3250:7: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/16/map:65: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘virtual std::ostream& libmaus2::util::FileTempFileContainer::getOutputTempFile(uint64_t)’ at ./libmaus2/util/FileTempFileContainer.hpp:93:27: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘virtual std::istream& libmaus2::util::FileTempFileContainer::openInputTempFile(uint64_t)’ at ./libmaus2/util/FileTempFileContainer.hpp:121:17: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘virtual std::istream& libmaus2::util::FileTempFileContainer::openInputTempFile(uint64_t)’ at ./libmaus2/util/FileTempFileContainer.hpp:123:26: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/16/algorithm:63, from ./libmaus2/autoarray/AutoArray.hpp:35: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h: In function ‘constexpr void std::__pop_heap(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Compare = less]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:257:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 257 | __pop_heap(_RandomAccessIterator __first, _RandomAccessIterator __last, | ^~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:257:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:257:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::__cxx11::basic_string; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘virtual std::ostream& libmaus2::util::FileTempFileContainer::openOutputTempFile(uint64_t)’ at ./libmaus2/util/FileTempFileContainer.hpp:79:17: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::__cxx11::basic_string; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘virtual std::ostream& libmaus2::util::FileTempFileContainer::openOutputTempFile(uint64_t)’ at ./libmaus2/util/FileTempFileContainer.hpp:80:71: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::__cxx11::basic_string; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘virtual std::ostream& libmaus2::util::FileTempFileContainer::openOutputTempFile(uint64_t)’ at ./libmaus2/util/FileTempFileContainer.hpp:81:80: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘virtual std::ostream& libmaus2::util::FileTempFileContainer::openOutputTempFile(uint64_t)’ at ./libmaus2/util/FileTempFileContainer.hpp:81:18: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘virtual std::ostream& libmaus2::util::FileTempFileContainer::openOutputTempFile(uint64_t)’ at ./libmaus2/util/FileTempFileContainer.hpp:82:27: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h:3250:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 3250 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = libmaus2::suffixsort::bwtb3m::MergeStrategyBlock*; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void libmaus2::suffixsort::bwtb3m::MergeStrategyBaseBlock::fillNodeMap(std::map&)’ at ./libmaus2/suffixsort/bwtb3m/MergeStrategyBaseBlock.hpp:198:14: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = libmaus2::suffixsort::bwtb3m::MergeStrategyBlock*; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void libmaus2::suffixsort::bwtb3m::MergeStrategyMergeBlock::fillNodeMap(std::map&)’ at ./libmaus2/suffixsort/bwtb3m/MergeStrategyMergeBlock.hpp:55:14: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = libmaus2::suffixsort::bwtb3m::MergeStrategyBlock*; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void libmaus2::suffixsort::bwtb3m::MergeStrategyBaseBlock::fillNodeMap(std::map&)’ at ./libmaus2/suffixsort/bwtb3m/MergeStrategyBaseBlock.hpp:198:14, inlined from ‘virtual void libmaus2::suffixsort::bwtb3m::MergeStrategyMergeBlock::fillNodeMap(std::map&)’ at ./libmaus2/suffixsort/bwtb3m/MergeStrategyMergeBlock.hpp:58:21: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = libmaus2::suffixsort::bwtb3m::MergeStrategyBlock*; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void libmaus2::suffixsort::bwtb3m::MergeStrategyBaseBlock::fillNodeMap(std::map&)’ at ./libmaus2/suffixsort/bwtb3m/MergeStrategyBaseBlock.hpp:198:14, inlined from ‘libmaus2::suffixsort::bwtb3m::MergeTree::MergeTree(std::istream&)’ at ./libmaus2/suffixsort/bwtb3m/MergeTree.hpp:58:28, inlined from ‘bool libmaus2::suffixsort::bwtb3m::MergeTree::checkSerialisation() const’ at ./libmaus2/suffixsort/bwtb3m/MergeTree.hpp:135:32: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = libmaus2::suffixsort::bwtb3m::MergeStrategyBlock*; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void libmaus2::suffixsort::bwtb3m::MergeStrategyBaseBlock::fillNodeMap(std::map&)’ at ./libmaus2/suffixsort/bwtb3m/MergeStrategyBaseBlock.hpp:198:14, inlined from ‘libmaus2::suffixsort::bwtb3m::MergeTree::MergeTree(libmaus2::suffixsort::bwtb3m::MergeStrategyBlock::shared_ptr_type)’ at ./libmaus2/suffixsort/bwtb3m/MergeTree.hpp:49:28, inlined from ‘static std::shared_ptr libmaus2::suffixsort::bwtb3m::MergeStrategyConstruction::constructMergeTree(std::vector >, uint64_t, uint64_t, uint64_t, std::ostream*)’ at ./libmaus2/suffixsort/bwtb3m/MergeStrategyConstruction.hpp:165:54: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr::SparseGammaGapMergeInfo>; _Compare = std::less; _Alloc = std::allocator::SparseGammaGapMergeInfo> > >]’, inlined from ‘bool libmaus2::gamma::SparseGammaGapMultiFileLevelSetTemplate<_data_type>::checkMergePacket(uint64_t&, uint64_t&) [with _data_type = long long unsigned int]’ at ./libmaus2/gamma/SparseGammaGapMultiFileLevelSet.hpp:167:18: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree::SparseGammaGapMergeInfo> >, std::_Select1st::SparseGammaGapMergeInfo> > >, std::less, std::allocator::SparseGammaGapMergeInfo> > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h: In function ‘constexpr void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Distance = int; _Tp = pair; _Compare = libmaus2::sorting::MergingReadBack::HeapOrderAdapter]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:229:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 229 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr::SparseGammaGapMergeInfo>; _Compare = std::less; _Alloc = std::allocator::SparseGammaGapMergeInfo> > >]’, inlined from ‘typename libmaus2::gamma::SparseGammaGapMergeTemplate<_data_type>::SparseGammaGapMergeInfo* libmaus2::gamma::SparseGammaGapMultiFileLevelSetTemplate<_data_type>::queueMergeInfo(const libmaus2::gamma::SparseGammaGapMultiFile&, const libmaus2::gamma::SparseGammaGapMultiFile&) [with _data_type = long long unsigned int]’ at ./libmaus2/gamma/SparseGammaGapMultiFileLevelSet.hpp:197:18: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree::SparseGammaGapMergeInfo> >, std::_Select1st::SparseGammaGapMergeInfo> > >, std::less, std::allocator::SparseGammaGapMergeInfo> > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr::SparseGammaGapMergeInfo>; _Compare = std::less; _Alloc = std::allocator::SparseGammaGapMergeInfo> > >]’, inlined from ‘typename libmaus2::gamma::SparseGammaGapMergeTemplate<_data_type>::SparseGammaGapMergeInfo* libmaus2::gamma::SparseGammaGapMultiFileLevelSetTemplate<_data_type>::queueMergeInfo(const libmaus2::gamma::SparseGammaGapMultiFile&, const libmaus2::gamma::SparseGammaGapMultiFile&) [with _data_type = long long unsigned int]’ at ./libmaus2/gamma/SparseGammaGapMultiFileLevelSet.hpp:198:14: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree::SparseGammaGapMergeInfo> >, std::_Select1st::SparseGammaGapMergeInfo> > >, std::less, std::allocator::SparseGammaGapMergeInfo> > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h: In function ‘constexpr void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Distance = int; _Tp = pair; _Compare = libmaus2::sorting::SerialisingMergingReadBack >::HeapOrderAdapter]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:229:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 229 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h: In function ‘constexpr void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Distance = int; _Tp = pair; _Compare = libmaus2::sorting::SerialisingMergingReadBack::HeapOrderAdapter]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:229:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 In file included from ./libmaus2/wavelet/ImpCompactHuffmanWaveletTree.hpp:26, from ./libmaus2/lf/ImpCompactHuffmanWaveletLF.hpp:23, from ./libmaus2/suffixsort/bwtb3m/BwtMergeComputeSampledSA.hpp:24: ./libmaus2/huffman/HuffmanTree.hpp: In constructor ‘libmaus2::huffman::HuffmanTree::HuffmanTree(iterator, uint64_t, bool, bool, bool) [with iterator = std::_Rb_tree_iterator >]’: ./libmaus2/huffman/HuffmanTree.hpp:643:25: note: parameter passing for argument of type ‘std::_Rb_tree_iterator >’ changed in GCC 7.1 643 | HuffmanTree(iterator F, uint64_t const s, bool const sortbydepth = false, bool const rsetcode = false, bool const rdfsorder = false) | ^~~~~~~~~~~ In function ‘constexpr void std::pop_heap(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator > >; _Compare = less]’, inlined from ‘void std::priority_queue<_Tp, _Sequence, _Compare>::pop() [with _Tp = libmaus2::gamma::SparseGammaGapMultiFile; _Sequence = std::vector >; _Compare = std::less]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_queue.h:894:15, inlined from ‘std::vector > libmaus2::gamma::SparseGammaGapMultiFileLevelSetTemplate<_data_type>::merge(const std::string&, uint64_t) [with _data_type = long long unsigned int]’ at ./libmaus2/gamma/SparseGammaGapMultiFileLevelSet.hpp:387:30: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:334:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 334 | std::__pop_heap(__first, __last, __last, __comp); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘constexpr void std::pop_heap(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator > >; _Compare = less]’, inlined from ‘void std::priority_queue<_Tp, _Sequence, _Compare>::pop() [with _Tp = libmaus2::gamma::SparseGammaGapMultiFile; _Sequence = std::vector >; _Compare = std::less]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_queue.h:894:15, inlined from ‘std::vector > libmaus2::gamma::SparseGammaGapMultiFileLevelSetTemplate<_data_type>::merge(const std::string&, uint64_t) [with _data_type = long long unsigned int]’ at ./libmaus2/gamma/SparseGammaGapMultiFileLevelSet.hpp:388:31: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:334:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 334 | std::__pop_heap(__first, __last, __last, __comp); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘void libmaus2::suffixsort::bwtb3m::BwtMergeSortState::computeHuffmanTree()’, inlined from ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeBwt(const libmaus2::suffixsort::bwtb3m::BwtMergeSortOptions&, std::ostream*) [with input_types_type = libmaus2::suffixsort::CompactInputTypes<64>]’ at ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:3936:30: ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:552:49: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::iterator’ changed in GCC 7.1 552 | ) | ^ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h:3250:7: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 3250 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = long long unsigned int; _Tp = std::deque; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘void libmaus2::gamma::SparseGammaGapMultiFileLevelSetTemplate<_data_type>::putFile(const std::vector >&) [with _data_type = long long unsigned int]’ at ./libmaus2/gamma/SparseGammaGapMultiFileLevelSet.hpp:225:20: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:559:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 559 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = long long unsigned int; _Tp = std::deque; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘void libmaus2::gamma::SparseGammaGapMultiFileLevelSetTemplate<_data_type>::putFile(const std::vector >&) [with _data_type = long long unsigned int]’ at ./libmaus2/gamma/SparseGammaGapMultiFileLevelSet.hpp:227:22: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:559:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 559 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = long long unsigned int; _Tp = std::deque; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘void libmaus2::gamma::SparseGammaGapMultiFileLevelSetTemplate<_data_type>::putFile(const std::vector >&) [with _data_type = long long unsigned int]’ at ./libmaus2/gamma/SparseGammaGapMultiFileLevelSet.hpp:228:21: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:559:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 559 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = long long unsigned int; _Tp = std::deque; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘void libmaus2::gamma::SparseGammaGapMultiFileLevelSetTemplate<_data_type>::putFile(const std::vector >&) [with _data_type = long long unsigned int]’ at ./libmaus2/gamma/SparseGammaGapMultiFileLevelSet.hpp:232:21: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:559:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 559 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 | std::tuple<>()); | ~~~~~~~~~~~~~~~ libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateCompact64.cpp -o libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplateCompact64.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplatePac64.lo `test -f 'libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplatePac64.cpp' || echo './'`libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplatePac64.cpp libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplatePac64.cpp -fPIC -DPIC -o libmaus2/suffixsort/bwtb3m/.libs/la-BwtMergeSortTemplatePac64.o In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/util/IntervalTree.hpp:25, from ./libmaus2/gamma/GammaRLDecoder.hpp:28, from ./libmaus2/gamma/GammaRLEncoder.hpp:29, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:24, from ./libmaus2/suffixsort/bwtb3m/BwtMergeComputeSampledSA.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplatePac64.cpp:20: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/suffixsort/bwtb3m/GapArrayWrapper.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeIsaParallelBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:24: ./libmaus2/util/AtomicArray.hpp: At global scope: ./libmaus2/util/AtomicArray.hpp:45:43: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 45 | AtomicArray(AtomicArray const & O) = delete; | ^~~~~~~~~~~~~~~~~ ./libmaus2/util/AtomicArray.hpp:45:43: note: remove the ‘< >’ In file included from ./libmaus2/suffixsort/bwtb3m/BwtMergeIsaParallelBase.hpp:24: ./libmaus2/suffixsort/GapArrayByte.hpp: In member function ‘void libmaus2::suffixsort::GapArrayByte::flush()’: ./libmaus2/suffixsort/GapArrayByte.hpp:134:42: warning: variable ‘overflowcnt’ set but not used [-Wunused-but-set-variable=] 134 | uint64_t overflowcnt = 0; | ^~~~~~~~~~~ In file included from ./libmaus2/suffixsort/BwtMergeTempFileNameSet.hpp:27, from ./libmaus2/suffixsort/BwtMergeBlockSortResult.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:33: ./libmaus2/util/DirectoryStructure.hpp: In member function ‘std::string libmaus2::util::DirectoryStructure::printGenerate(std::ostream&, std::string, uint64_t) const’: ./libmaus2/util/DirectoryStructure.hpp:207:58: warning: variable ‘batchcnt’ set but not used [-Wunused-but-set-variable=] 207 | uint64_t batchcnt = 0; | ^~~~~~~~ ./libmaus2/util/DirectoryStructure.hpp: In member function ‘std::string libmaus2::util::DirectoryStructure::printRemove(std::ostream&, std::string, uint64_t) const’: ./libmaus2/util/DirectoryStructure.hpp:282:58: warning: variable ‘batchcnt’ set but not used [-Wunused-but-set-variable=] 282 | uint64_t batchcnt = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:183, from ./libmaus2/huffman/CanonicalEncoder.hpp:26, from ./libmaus2/huffman/RLEncoder.hpp:25, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22: ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 2]’: ./libmaus2/huffman/HuffmanSorting.hpp:860:55: required from here 860 | huffman::EncodeTable enctable ( root ); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:188: ./libmaus2/huffman/HuffmanSorting.hpp: In instantiation of ‘static void libmaus2::huffman::HuffmanSorting::uncompressHuffmanCoded(uint64_t*, uint64_t, uint64_t, uint64_t, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::HuffmanTreeNode*, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::EncodeTable&) [with unsigned int lookupwords = 2; uint64_t = long long unsigned int]’: ./libmaus2/huffman/HuffmanSorting.hpp:1091:27: required from here 1091 | uncompressHuffmanCoded(acode.get(), 0 /* bit offset */, lowhalf /* syms */, firsthighsym, enctable,dectable,root.get(),dectable0,dectable1,enctable0,enctable1); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/huffman/HuffmanSorting.hpp:534:42: warning: variable ‘alldecoffset’ set but not used [-Wunused-but-set-variable=] 534 | uint64_t alldecoffset = highdecoffset; | ^~~~~~~~~~~~ ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 1]’: ./libmaus2/huffman/CanonicalEncoder.hpp:219:116: required from here 219 | return ::libmaus2::huffman::EncodeTable<1>::unique_ptr_type(new ::libmaus2::huffman::EncodeTable<1>(Ptree.get())); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/wavelet/RlToHwtBase.hpp:30, from ./libmaus2/wavelet/RlToHwtTermRequest.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:44: ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp: In instantiation of ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTree(libmaus2::autoarray::AutoArray&, const std::string&, const std::string&, const libmaus2::huffman::HuffmanTree*, uint64_t) [with bool radixsort = true; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’: ./libmaus2/suffixsort/BwtMergeBlockSortRequest.hpp:862:90: required from ‘libmaus2::suffixsort::BwtMergeBlockSortResult libmaus2::suffixsort::BwtMergeBlockSortRequest::sortBlock(std::ostream*) const [with input_types_type = libmaus2::suffixsort::ByteInputTypes<32>; rl_encoder = libmaus2::huffman::RLEncoderTemplate, libmaus2::bitio::FastWriteBitWriterTemplate >, 128, 255, false> > >; std::ostream = std::basic_ostream]’ 862 | ::libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTree( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 863 | UT,tmpfilenames.getHWT(),tmpfileprefix,uhnode.get(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 864 | 1/* num threads */ | ~~~~~~~~~~~~~~~~~~ 865 | ); | ~ ./libmaus2/suffixsort/BwtMergeBlockSortRequest.hpp:979:79: required from ‘std::string libmaus2::suffixsort::BwtMergeBlockSortRequest::dispatch(std::ostream*) const [with rl_encoder = libmaus2::huffman::RLEncoderTemplate, libmaus2::bitio::FastWriteBitWriterTemplate >, 128, 255, false> > >; std::string = std::__cxx11::basic_string; std::ostream = std::basic_ostream]’ 979 | result = sortBlock,rl_encoder>(logstr); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BaseBlockSortThread.hpp:128:118: required from here 128 | block->sortresult = ::libmaus2::suffixsort::BwtMergeBlockSortResult::load(block->sortreq.dispatch(logstr)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:874:90: warning: variable ‘l_numsyms0’ set but not used [-Wunused-but-set-variable=] 874 | uint64_t l_numsyms0 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:879:90: warning: variable ‘r_numsyms1’ set but not used [-Wunused-but-set-variable=] 879 | uint64_t r_numsyms1 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:755:66: warning: variable ‘numsyms1’ set but not used [-Wunused-but-set-variable=] 755 | uint64_t numsyms1 = 0; | ^~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp: In instantiation of ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRl(const std::string&, const std::string&, const std::string&, const libmaus2::huffman::HuffmanTree&, uint64_t, uint64_t) [with rl_decoder = libmaus2::huffman::RLDecoder; bool radixsort = true; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1368:123: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwt(const std::string&, const std::string&, std::string, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’ 1368 | ::libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRl( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 1369 | bwt,hwt,tmpprefix,H, | ~~~~~~~~~~~~~~~~~~~~ 1370 | utf8WaveletMaxPartMem() /* part size maximum */, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1371 | utf8WaveletMaxThreads()); | ~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:4191:65: required from ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeBwt(const libmaus2::suffixsort::bwtb3m::BwtMergeSortOptions&, std::ostream*) [with input_types_type = libmaus2::suffixsort::PacInputTypes<64>; std::ostream = std::basic_ostream]’ 4191 | libmaus2::wavelet::RlToHwtBase::rlToHwt(options.outfn, outhwt, options.tmpfilenamebase+"_finalhwttmp",options.numthreads) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplatePac64.cpp:22:47: required from here 22 | template struct libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate< libmaus2::suffixsort::PacInputTypes<64> >; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1419:90: warning: variable ‘l_numsyms0’ set but not used [-Wunused-but-set-variable=] 1419 | uint64_t l_numsyms0 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1424:90: warning: variable ‘r_numsyms1’ set but not used [-Wunused-but-set-variable=] 1424 | uint64_t r_numsyms1 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1299:66: warning: variable ‘numsyms1’ set but not used [-Wunused-but-set-variable=] 1299 | uint64_t numsyms1 = 0; | ^~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp: In instantiation of ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRlWithTerm(const std::vector >&, const std::string&, const std::string&, const libmaus2::huffman::HuffmanTree&, uint64_t, uint64_t, uint64_t, uint64_t) [with rl_decoder = libmaus2::huffman::RLDecoder; bool radixsort = true; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1500:131: required from ‘static void libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtTerm(const std::vector >&, const std::string&, std::string, libmaus2::huffman::HuffmanTree&, uint64_t, uint64_t, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’ 1500 | ::libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRlWithTerm( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 1501 | bwt,hwt,tmpprefix,H,p0r,bwtterm, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1502 | utf8WaveletMaxPartMem() /* maximum part size */, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1503 | utf8WaveletMaxThreads() | ~~~~~~~~~~~~~~~~~~~~~~~ 1504 | ); | ~ ./libmaus2/wavelet/RlToHwtBase.hpp:1687:17: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtTerm(const std::vector >&, const std::string&, std::string, std::string, uint64_t, uint64_t, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’ 1687 | rlToHwtTerm(bwt,hwt,tmpprefix,H,bwtterm,p0r,numthreads); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/wavelet/RlToHwtTermRequest.hpp:118:67: required from ‘libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtTermRequest::dispatch() [with rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >]’ 118 | libmaus2::wavelet::RlToHwtBase::rlToHwtTerm(bwt,hwt,tmpprefix,huftreefilename,bwtterm,p0r,numthreads) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:926:102: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::ensureWaveletTreeGenerated(const libmaus2::suffixsort::BwtMergeBlockSortResult&, std::ostream*) [with input_types_type = libmaus2::suffixsort::PacInputTypes<64>; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::ostream = std::basic_ostream]’ 926 | libmaus2::wavelet::ImpCompactHuffmanWaveletTree::unique_ptr_type ptr(ureq->dispatch()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~ libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplatePac64.cpp:22:47: required from here 22 | template struct libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate< libmaus2::suffixsort::PacInputTypes<64> >; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:2048:90: warning: variable ‘l_numsyms0’ set but not used [-Wunused-but-set-variable=] 2048 | uint64_t l_numsyms0 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:2053:90: warning: variable ‘r_numsyms1’ set but not used [-Wunused-but-set-variable=] 2053 | uint64_t r_numsyms1 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1929:66: warning: variable ‘numsyms1’ set but not used [-Wunused-but-set-variable=] 1929 | uint64_t numsyms1 = 0; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/16/map:64, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:51, from ./libmaus2/math/numbits.hpp:24, from ./libmaus2/huffman/IndexWriter.hpp:24, from ./libmaus2/huffman/RLEncoder.hpp:22: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h: In function ‘std::pair::rebind<_Val>::other>::pointer>::_Base_ptr, typename std::__rb_tree::_Node_traits<_Val, typename __gnu_cxx::__alloc_traits::rebind<_Val>::other>::pointer>::_Base_ptr> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(const_iterator, const key_type&) [with _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h:2952:5: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 2952 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h:3250:7: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 3250 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair::SparseGammaGapMergeInfo> >; _KeyOfValue = std::_Select1st::SparseGammaGapMergeInfo> > >; _Compare = std::less; _Alloc = std::allocator::SparseGammaGapMergeInfo> > >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h:3250:7: note: parameter passing for argument of type ‘std::_Rb_tree::SparseGammaGapMergeInfo> >, std::_Select1st::SparseGammaGapMergeInfo> > >, std::less, std::allocator::SparseGammaGapMergeInfo> > > >::const_iterator’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h:3250:7: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h:3250:7: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/16/map:65: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘virtual std::ostream& libmaus2::util::FileTempFileContainer::getOutputTempFile(uint64_t)’ at ./libmaus2/util/FileTempFileContainer.hpp:93:27: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘virtual std::istream& libmaus2::util::FileTempFileContainer::openInputTempFile(uint64_t)’ at ./libmaus2/util/FileTempFileContainer.hpp:121:17: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘virtual std::istream& libmaus2::util::FileTempFileContainer::openInputTempFile(uint64_t)’ at ./libmaus2/util/FileTempFileContainer.hpp:123:26: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/16/algorithm:63, from ./libmaus2/autoarray/AutoArray.hpp:35: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h: In function ‘constexpr void std::__pop_heap(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Compare = less]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:257:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 257 | __pop_heap(_RandomAccessIterator __first, _RandomAccessIterator __last, | ^~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:257:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:257:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::__cxx11::basic_string; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘virtual std::ostream& libmaus2::util::FileTempFileContainer::openOutputTempFile(uint64_t)’ at ./libmaus2/util/FileTempFileContainer.hpp:79:17: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::__cxx11::basic_string; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘virtual std::ostream& libmaus2::util::FileTempFileContainer::openOutputTempFile(uint64_t)’ at ./libmaus2/util/FileTempFileContainer.hpp:80:71: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::__cxx11::basic_string; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘virtual std::ostream& libmaus2::util::FileTempFileContainer::openOutputTempFile(uint64_t)’ at ./libmaus2/util/FileTempFileContainer.hpp:81:80: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘virtual std::ostream& libmaus2::util::FileTempFileContainer::openOutputTempFile(uint64_t)’ at ./libmaus2/util/FileTempFileContainer.hpp:81:18: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘virtual std::ostream& libmaus2::util::FileTempFileContainer::openOutputTempFile(uint64_t)’ at ./libmaus2/util/FileTempFileContainer.hpp:82:27: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h:3250:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 3250 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = libmaus2::suffixsort::bwtb3m::MergeStrategyBlock*; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void libmaus2::suffixsort::bwtb3m::MergeStrategyBaseBlock::fillNodeMap(std::map&)’ at ./libmaus2/suffixsort/bwtb3m/MergeStrategyBaseBlock.hpp:198:14: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = libmaus2::suffixsort::bwtb3m::MergeStrategyBlock*; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void libmaus2::suffixsort::bwtb3m::MergeStrategyMergeBlock::fillNodeMap(std::map&)’ at ./libmaus2/suffixsort/bwtb3m/MergeStrategyMergeBlock.hpp:55:14: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = libmaus2::suffixsort::bwtb3m::MergeStrategyBlock*; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void libmaus2::suffixsort::bwtb3m::MergeStrategyBaseBlock::fillNodeMap(std::map&)’ at ./libmaus2/suffixsort/bwtb3m/MergeStrategyBaseBlock.hpp:198:14, inlined from ‘virtual void libmaus2::suffixsort::bwtb3m::MergeStrategyMergeBlock::fillNodeMap(std::map&)’ at ./libmaus2/suffixsort/bwtb3m/MergeStrategyMergeBlock.hpp:58:21: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = libmaus2::suffixsort::bwtb3m::MergeStrategyBlock*; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void libmaus2::suffixsort::bwtb3m::MergeStrategyBaseBlock::fillNodeMap(std::map&)’ at ./libmaus2/suffixsort/bwtb3m/MergeStrategyBaseBlock.hpp:198:14, inlined from ‘libmaus2::suffixsort::bwtb3m::MergeTree::MergeTree(std::istream&)’ at ./libmaus2/suffixsort/bwtb3m/MergeTree.hpp:58:28, inlined from ‘bool libmaus2::suffixsort::bwtb3m::MergeTree::checkSerialisation() const’ at ./libmaus2/suffixsort/bwtb3m/MergeTree.hpp:135:32: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = libmaus2::suffixsort::bwtb3m::MergeStrategyBlock*; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void libmaus2::suffixsort::bwtb3m::MergeStrategyBaseBlock::fillNodeMap(std::map&)’ at ./libmaus2/suffixsort/bwtb3m/MergeStrategyBaseBlock.hpp:198:14, inlined from ‘libmaus2::suffixsort::bwtb3m::MergeTree::MergeTree(libmaus2::suffixsort::bwtb3m::MergeStrategyBlock::shared_ptr_type)’ at ./libmaus2/suffixsort/bwtb3m/MergeTree.hpp:49:28, inlined from ‘static std::shared_ptr libmaus2::suffixsort::bwtb3m::MergeStrategyConstruction::constructMergeTree(std::vector >, uint64_t, uint64_t, uint64_t, std::ostream*)’ at ./libmaus2/suffixsort/bwtb3m/MergeStrategyConstruction.hpp:165:54: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr::SparseGammaGapMergeInfo>; _Compare = std::less; _Alloc = std::allocator::SparseGammaGapMergeInfo> > >]’, inlined from ‘bool libmaus2::gamma::SparseGammaGapMultiFileLevelSetTemplate<_data_type>::checkMergePacket(uint64_t&, uint64_t&) [with _data_type = long long unsigned int]’ at ./libmaus2/gamma/SparseGammaGapMultiFileLevelSet.hpp:167:18: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree::SparseGammaGapMergeInfo> >, std::_Select1st::SparseGammaGapMergeInfo> > >, std::less, std::allocator::SparseGammaGapMergeInfo> > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h: In function ‘constexpr void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Distance = int; _Tp = pair; _Compare = libmaus2::sorting::MergingReadBack::HeapOrderAdapter]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:229:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 229 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr::SparseGammaGapMergeInfo>; _Compare = std::less; _Alloc = std::allocator::SparseGammaGapMergeInfo> > >]’, inlined from ‘typename libmaus2::gamma::SparseGammaGapMergeTemplate<_data_type>::SparseGammaGapMergeInfo* libmaus2::gamma::SparseGammaGapMultiFileLevelSetTemplate<_data_type>::queueMergeInfo(const libmaus2::gamma::SparseGammaGapMultiFile&, const libmaus2::gamma::SparseGammaGapMultiFile&) [with _data_type = long long unsigned int]’ at ./libmaus2/gamma/SparseGammaGapMultiFileLevelSet.hpp:197:18: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree::SparseGammaGapMergeInfo> >, std::_Select1st::SparseGammaGapMergeInfo> > >, std::less, std::allocator::SparseGammaGapMergeInfo> > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr::SparseGammaGapMergeInfo>; _Compare = std::less; _Alloc = std::allocator::SparseGammaGapMergeInfo> > >]’, inlined from ‘typename libmaus2::gamma::SparseGammaGapMergeTemplate<_data_type>::SparseGammaGapMergeInfo* libmaus2::gamma::SparseGammaGapMultiFileLevelSetTemplate<_data_type>::queueMergeInfo(const libmaus2::gamma::SparseGammaGapMultiFile&, const libmaus2::gamma::SparseGammaGapMultiFile&) [with _data_type = long long unsigned int]’ at ./libmaus2/gamma/SparseGammaGapMultiFileLevelSet.hpp:198:14: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree::SparseGammaGapMergeInfo> >, std::_Select1st::SparseGammaGapMergeInfo> > >, std::less, std::allocator::SparseGammaGapMergeInfo> > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h: In function ‘constexpr void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Distance = int; _Tp = pair; _Compare = libmaus2::sorting::SerialisingMergingReadBack >::HeapOrderAdapter]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:229:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 229 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h: In function ‘constexpr void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Distance = int; _Tp = pair; _Compare = libmaus2::sorting::SerialisingMergingReadBack::HeapOrderAdapter]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:229:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 In file included from ./libmaus2/wavelet/ImpCompactHuffmanWaveletTree.hpp:26, from ./libmaus2/lf/ImpCompactHuffmanWaveletLF.hpp:23, from ./libmaus2/suffixsort/bwtb3m/BwtMergeComputeSampledSA.hpp:24: ./libmaus2/huffman/HuffmanTree.hpp: In constructor ‘libmaus2::huffman::HuffmanTree::HuffmanTree(iterator, uint64_t, bool, bool, bool) [with iterator = std::_Rb_tree_iterator >]’: ./libmaus2/huffman/HuffmanTree.hpp:643:25: note: parameter passing for argument of type ‘std::_Rb_tree_iterator >’ changed in GCC 7.1 643 | HuffmanTree(iterator F, uint64_t const s, bool const sortbydepth = false, bool const rsetcode = false, bool const rdfsorder = false) | ^~~~~~~~~~~ In function ‘constexpr void std::pop_heap(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator > >; _Compare = less]’, inlined from ‘void std::priority_queue<_Tp, _Sequence, _Compare>::pop() [with _Tp = libmaus2::gamma::SparseGammaGapMultiFile; _Sequence = std::vector >; _Compare = std::less]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_queue.h:894:15, inlined from ‘std::vector > libmaus2::gamma::SparseGammaGapMultiFileLevelSetTemplate<_data_type>::merge(const std::string&, uint64_t) [with _data_type = long long unsigned int]’ at ./libmaus2/gamma/SparseGammaGapMultiFileLevelSet.hpp:387:30: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:334:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 334 | std::__pop_heap(__first, __last, __last, __comp); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘constexpr void std::pop_heap(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator > >; _Compare = less]’, inlined from ‘void std::priority_queue<_Tp, _Sequence, _Compare>::pop() [with _Tp = libmaus2::gamma::SparseGammaGapMultiFile; _Sequence = std::vector >; _Compare = std::less]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_queue.h:894:15, inlined from ‘std::vector > libmaus2::gamma::SparseGammaGapMultiFileLevelSetTemplate<_data_type>::merge(const std::string&, uint64_t) [with _data_type = long long unsigned int]’ at ./libmaus2/gamma/SparseGammaGapMultiFileLevelSet.hpp:388:31: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:334:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 334 | std::__pop_heap(__first, __last, __last, __comp); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘void libmaus2::suffixsort::bwtb3m::BwtMergeSortState::computeHuffmanTree()’, inlined from ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeBwt(const libmaus2::suffixsort::bwtb3m::BwtMergeSortOptions&, std::ostream*) [with input_types_type = libmaus2::suffixsort::PacInputTypes<64>]’ at ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:3936:30: ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:552:49: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::iterator’ changed in GCC 7.1 552 | ) | ^ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h:3250:7: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 3250 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = long long unsigned int; _Tp = std::deque; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘void libmaus2::gamma::SparseGammaGapMultiFileLevelSetTemplate<_data_type>::putFile(const std::vector >&) [with _data_type = long long unsigned int]’ at ./libmaus2/gamma/SparseGammaGapMultiFileLevelSet.hpp:225:20: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:559:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 559 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = long long unsigned int; _Tp = std::deque; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘void libmaus2::gamma::SparseGammaGapMultiFileLevelSetTemplate<_data_type>::putFile(const std::vector >&) [with _data_type = long long unsigned int]’ at ./libmaus2/gamma/SparseGammaGapMultiFileLevelSet.hpp:227:22: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:559:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 559 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = long long unsigned int; _Tp = std::deque; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘void libmaus2::gamma::SparseGammaGapMultiFileLevelSetTemplate<_data_type>::putFile(const std::vector >&) [with _data_type = long long unsigned int]’ at ./libmaus2/gamma/SparseGammaGapMultiFileLevelSet.hpp:228:21: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:559:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 559 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = long long unsigned int; _Tp = std::deque; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘void libmaus2::gamma::SparseGammaGapMultiFileLevelSetTemplate<_data_type>::putFile(const std::vector >&) [with _data_type = long long unsigned int]’ at ./libmaus2/gamma/SparseGammaGapMultiFileLevelSet.hpp:232:21: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:559:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 559 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 | std::tuple<>()); | ~~~~~~~~~~~~~~~ libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplatePac64.cpp -o libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplatePac64.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplateUtf864.lo `test -f 'libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateUtf864.cpp' || echo './'`libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateUtf864.cpp libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateUtf864.cpp -fPIC -DPIC -o libmaus2/suffixsort/bwtb3m/.libs/la-BwtMergeSortTemplateUtf864.o In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/util/IntervalTree.hpp:25, from ./libmaus2/gamma/GammaRLDecoder.hpp:28, from ./libmaus2/gamma/GammaRLEncoder.hpp:29, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:24, from ./libmaus2/suffixsort/bwtb3m/BwtMergeComputeSampledSA.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateUtf864.cpp:20: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/suffixsort/bwtb3m/GapArrayWrapper.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeIsaParallelBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:24: ./libmaus2/util/AtomicArray.hpp: At global scope: ./libmaus2/util/AtomicArray.hpp:45:43: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 45 | AtomicArray(AtomicArray const & O) = delete; | ^~~~~~~~~~~~~~~~~ ./libmaus2/util/AtomicArray.hpp:45:43: note: remove the ‘< >’ In file included from ./libmaus2/suffixsort/bwtb3m/BwtMergeIsaParallelBase.hpp:24: ./libmaus2/suffixsort/GapArrayByte.hpp: In member function ‘void libmaus2::suffixsort::GapArrayByte::flush()’: ./libmaus2/suffixsort/GapArrayByte.hpp:134:42: warning: variable ‘overflowcnt’ set but not used [-Wunused-but-set-variable=] 134 | uint64_t overflowcnt = 0; | ^~~~~~~~~~~ In file included from ./libmaus2/suffixsort/BwtMergeTempFileNameSet.hpp:27, from ./libmaus2/suffixsort/BwtMergeBlockSortResult.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:33: ./libmaus2/util/DirectoryStructure.hpp: In member function ‘std::string libmaus2::util::DirectoryStructure::printGenerate(std::ostream&, std::string, uint64_t) const’: ./libmaus2/util/DirectoryStructure.hpp:207:58: warning: variable ‘batchcnt’ set but not used [-Wunused-but-set-variable=] 207 | uint64_t batchcnt = 0; | ^~~~~~~~ ./libmaus2/util/DirectoryStructure.hpp: In member function ‘std::string libmaus2::util::DirectoryStructure::printRemove(std::ostream&, std::string, uint64_t) const’: ./libmaus2/util/DirectoryStructure.hpp:282:58: warning: variable ‘batchcnt’ set but not used [-Wunused-but-set-variable=] 282 | uint64_t batchcnt = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:183, from ./libmaus2/huffman/CanonicalEncoder.hpp:26, from ./libmaus2/huffman/RLEncoder.hpp:25, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22: ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 2]’: ./libmaus2/huffman/HuffmanSorting.hpp:860:55: required from here 860 | huffman::EncodeTable enctable ( root ); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:188: ./libmaus2/huffman/HuffmanSorting.hpp: In instantiation of ‘static void libmaus2::huffman::HuffmanSorting::uncompressHuffmanCoded(uint64_t*, uint64_t, uint64_t, uint64_t, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::HuffmanTreeNode*, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::EncodeTable&) [with unsigned int lookupwords = 2; uint64_t = long long unsigned int]’: ./libmaus2/huffman/HuffmanSorting.hpp:1091:27: required from here 1091 | uncompressHuffmanCoded(acode.get(), 0 /* bit offset */, lowhalf /* syms */, firsthighsym, enctable,dectable,root.get(),dectable0,dectable1,enctable0,enctable1); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/huffman/HuffmanSorting.hpp:534:42: warning: variable ‘alldecoffset’ set but not used [-Wunused-but-set-variable=] 534 | uint64_t alldecoffset = highdecoffset; | ^~~~~~~~~~~~ ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 1]’: ./libmaus2/huffman/CanonicalEncoder.hpp:219:116: required from here 219 | return ::libmaus2::huffman::EncodeTable<1>::unique_ptr_type(new ::libmaus2::huffman::EncodeTable<1>(Ptree.get())); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/wavelet/RlToHwtBase.hpp:30, from ./libmaus2/wavelet/RlToHwtTermRequest.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:44: ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp: In instantiation of ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTree(libmaus2::autoarray::AutoArray&, const std::string&, const std::string&, const libmaus2::huffman::HuffmanTree*, uint64_t) [with bool radixsort = true; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’: ./libmaus2/suffixsort/BwtMergeBlockSortRequest.hpp:862:90: required from ‘libmaus2::suffixsort::BwtMergeBlockSortResult libmaus2::suffixsort::BwtMergeBlockSortRequest::sortBlock(std::ostream*) const [with input_types_type = libmaus2::suffixsort::ByteInputTypes<32>; rl_encoder = libmaus2::huffman::RLEncoderTemplate, libmaus2::bitio::FastWriteBitWriterTemplate >, 128, 255, false> > >; std::ostream = std::basic_ostream]’ 862 | ::libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTree( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 863 | UT,tmpfilenames.getHWT(),tmpfileprefix,uhnode.get(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 864 | 1/* num threads */ | ~~~~~~~~~~~~~~~~~~ 865 | ); | ~ ./libmaus2/suffixsort/BwtMergeBlockSortRequest.hpp:979:79: required from ‘std::string libmaus2::suffixsort::BwtMergeBlockSortRequest::dispatch(std::ostream*) const [with rl_encoder = libmaus2::huffman::RLEncoderTemplate, libmaus2::bitio::FastWriteBitWriterTemplate >, 128, 255, false> > >; std::string = std::__cxx11::basic_string; std::ostream = std::basic_ostream]’ 979 | result = sortBlock,rl_encoder>(logstr); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BaseBlockSortThread.hpp:128:118: required from here 128 | block->sortresult = ::libmaus2::suffixsort::BwtMergeBlockSortResult::load(block->sortreq.dispatch(logstr)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:874:90: warning: variable ‘l_numsyms0’ set but not used [-Wunused-but-set-variable=] 874 | uint64_t l_numsyms0 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:879:90: warning: variable ‘r_numsyms1’ set but not used [-Wunused-but-set-variable=] 879 | uint64_t r_numsyms1 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:755:66: warning: variable ‘numsyms1’ set but not used [-Wunused-but-set-variable=] 755 | uint64_t numsyms1 = 0; | ^~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp: In instantiation of ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRl(const std::string&, const std::string&, const std::string&, const libmaus2::huffman::HuffmanTree&, uint64_t, uint64_t) [with rl_decoder = libmaus2::huffman::RLDecoder; bool radixsort = true; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1368:123: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwt(const std::string&, const std::string&, std::string, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’ 1368 | ::libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRl( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 1369 | bwt,hwt,tmpprefix,H, | ~~~~~~~~~~~~~~~~~~~~ 1370 | utf8WaveletMaxPartMem() /* part size maximum */, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1371 | utf8WaveletMaxThreads()); | ~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:4191:65: required from ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeBwt(const libmaus2::suffixsort::bwtb3m::BwtMergeSortOptions&, std::ostream*) [with input_types_type = libmaus2::suffixsort::Utf8InputTypes<64>; std::ostream = std::basic_ostream]’ 4191 | libmaus2::wavelet::RlToHwtBase::rlToHwt(options.outfn, outhwt, options.tmpfilenamebase+"_finalhwttmp",options.numthreads) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateUtf864.cpp:22:47: required from here 22 | template struct libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate< libmaus2::suffixsort::Utf8InputTypes<64> >; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1419:90: warning: variable ‘l_numsyms0’ set but not used [-Wunused-but-set-variable=] 1419 | uint64_t l_numsyms0 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1424:90: warning: variable ‘r_numsyms1’ set but not used [-Wunused-but-set-variable=] 1424 | uint64_t r_numsyms1 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1299:66: warning: variable ‘numsyms1’ set but not used [-Wunused-but-set-variable=] 1299 | uint64_t numsyms1 = 0; | ^~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp: In instantiation of ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRlWithTerm(const std::vector >&, const std::string&, const std::string&, const libmaus2::huffman::HuffmanTree&, uint64_t, uint64_t, uint64_t, uint64_t) [with rl_decoder = libmaus2::huffman::RLDecoder; bool radixsort = true; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1500:131: required from ‘static void libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtTerm(const std::vector >&, const std::string&, std::string, libmaus2::huffman::HuffmanTree&, uint64_t, uint64_t, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’ 1500 | ::libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRlWithTerm( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 1501 | bwt,hwt,tmpprefix,H,p0r,bwtterm, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1502 | utf8WaveletMaxPartMem() /* maximum part size */, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1503 | utf8WaveletMaxThreads() | ~~~~~~~~~~~~~~~~~~~~~~~ 1504 | ); | ~ ./libmaus2/wavelet/RlToHwtBase.hpp:1687:17: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtTerm(const std::vector >&, const std::string&, std::string, std::string, uint64_t, uint64_t, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’ 1687 | rlToHwtTerm(bwt,hwt,tmpprefix,H,bwtterm,p0r,numthreads); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/wavelet/RlToHwtTermRequest.hpp:118:67: required from ‘libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtTermRequest::dispatch() [with rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >]’ 118 | libmaus2::wavelet::RlToHwtBase::rlToHwtTerm(bwt,hwt,tmpprefix,huftreefilename,bwtterm,p0r,numthreads) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:926:102: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::ensureWaveletTreeGenerated(const libmaus2::suffixsort::BwtMergeBlockSortResult&, std::ostream*) [with input_types_type = libmaus2::suffixsort::Utf8InputTypes<64>; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::ostream = std::basic_ostream]’ 926 | libmaus2::wavelet::ImpCompactHuffmanWaveletTree::unique_ptr_type ptr(ureq->dispatch()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~ libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateUtf864.cpp:22:47: required from here 22 | template struct libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate< libmaus2::suffixsort::Utf8InputTypes<64> >; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:2048:90: warning: variable ‘l_numsyms0’ set but not used [-Wunused-but-set-variable=] 2048 | uint64_t l_numsyms0 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:2053:90: warning: variable ‘r_numsyms1’ set but not used [-Wunused-but-set-variable=] 2053 | uint64_t r_numsyms1 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1929:66: warning: variable ‘numsyms1’ set but not used [-Wunused-but-set-variable=] 1929 | uint64_t numsyms1 = 0; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/16/map:64, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:51, from ./libmaus2/math/numbits.hpp:24, from ./libmaus2/huffman/IndexWriter.hpp:24, from ./libmaus2/huffman/RLEncoder.hpp:22: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h: In function ‘std::pair::rebind<_Val>::other>::pointer>::_Base_ptr, typename std::__rb_tree::_Node_traits<_Val, typename __gnu_cxx::__alloc_traits::rebind<_Val>::other>::pointer>::_Base_ptr> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(const_iterator, const key_type&) [with _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h:2952:5: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 2952 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h:3250:7: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 3250 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair::SparseGammaGapMergeInfo> >; _KeyOfValue = std::_Select1st::SparseGammaGapMergeInfo> > >; _Compare = std::less; _Alloc = std::allocator::SparseGammaGapMergeInfo> > >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h:3250:7: note: parameter passing for argument of type ‘std::_Rb_tree::SparseGammaGapMergeInfo> >, std::_Select1st::SparseGammaGapMergeInfo> > >, std::less, std::allocator::SparseGammaGapMergeInfo> > > >::const_iterator’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h:3250:7: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h:3250:7: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/16/map:65: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘virtual std::ostream& libmaus2::util::FileTempFileContainer::getOutputTempFile(uint64_t)’ at ./libmaus2/util/FileTempFileContainer.hpp:93:27: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘virtual std::istream& libmaus2::util::FileTempFileContainer::openInputTempFile(uint64_t)’ at ./libmaus2/util/FileTempFileContainer.hpp:121:17: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘virtual std::istream& libmaus2::util::FileTempFileContainer::openInputTempFile(uint64_t)’ at ./libmaus2/util/FileTempFileContainer.hpp:123:26: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/16/algorithm:63, from ./libmaus2/autoarray/AutoArray.hpp:35: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h: In function ‘constexpr void std::__pop_heap(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Compare = less]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:257:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 257 | __pop_heap(_RandomAccessIterator __first, _RandomAccessIterator __last, | ^~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:257:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:257:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::__cxx11::basic_string; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘virtual std::ostream& libmaus2::util::FileTempFileContainer::openOutputTempFile(uint64_t)’ at ./libmaus2/util/FileTempFileContainer.hpp:79:17: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::__cxx11::basic_string; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘virtual std::ostream& libmaus2::util::FileTempFileContainer::openOutputTempFile(uint64_t)’ at ./libmaus2/util/FileTempFileContainer.hpp:80:71: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::__cxx11::basic_string; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘virtual std::ostream& libmaus2::util::FileTempFileContainer::openOutputTempFile(uint64_t)’ at ./libmaus2/util/FileTempFileContainer.hpp:81:80: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘virtual std::ostream& libmaus2::util::FileTempFileContainer::openOutputTempFile(uint64_t)’ at ./libmaus2/util/FileTempFileContainer.hpp:81:18: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘virtual std::ostream& libmaus2::util::FileTempFileContainer::openOutputTempFile(uint64_t)’ at ./libmaus2/util/FileTempFileContainer.hpp:82:27: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h:3250:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 3250 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = libmaus2::suffixsort::bwtb3m::MergeStrategyBlock*; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void libmaus2::suffixsort::bwtb3m::MergeStrategyBaseBlock::fillNodeMap(std::map&)’ at ./libmaus2/suffixsort/bwtb3m/MergeStrategyBaseBlock.hpp:198:14: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = libmaus2::suffixsort::bwtb3m::MergeStrategyBlock*; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void libmaus2::suffixsort::bwtb3m::MergeStrategyMergeBlock::fillNodeMap(std::map&)’ at ./libmaus2/suffixsort/bwtb3m/MergeStrategyMergeBlock.hpp:55:14: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = libmaus2::suffixsort::bwtb3m::MergeStrategyBlock*; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void libmaus2::suffixsort::bwtb3m::MergeStrategyBaseBlock::fillNodeMap(std::map&)’ at ./libmaus2/suffixsort/bwtb3m/MergeStrategyBaseBlock.hpp:198:14, inlined from ‘virtual void libmaus2::suffixsort::bwtb3m::MergeStrategyMergeBlock::fillNodeMap(std::map&)’ at ./libmaus2/suffixsort/bwtb3m/MergeStrategyMergeBlock.hpp:58:21: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = libmaus2::suffixsort::bwtb3m::MergeStrategyBlock*; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void libmaus2::suffixsort::bwtb3m::MergeStrategyBaseBlock::fillNodeMap(std::map&)’ at ./libmaus2/suffixsort/bwtb3m/MergeStrategyBaseBlock.hpp:198:14, inlined from ‘libmaus2::suffixsort::bwtb3m::MergeTree::MergeTree(std::istream&)’ at ./libmaus2/suffixsort/bwtb3m/MergeTree.hpp:58:28, inlined from ‘bool libmaus2::suffixsort::bwtb3m::MergeTree::checkSerialisation() const’ at ./libmaus2/suffixsort/bwtb3m/MergeTree.hpp:135:32: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = libmaus2::suffixsort::bwtb3m::MergeStrategyBlock*; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void libmaus2::suffixsort::bwtb3m::MergeStrategyBaseBlock::fillNodeMap(std::map&)’ at ./libmaus2/suffixsort/bwtb3m/MergeStrategyBaseBlock.hpp:198:14, inlined from ‘libmaus2::suffixsort::bwtb3m::MergeTree::MergeTree(libmaus2::suffixsort::bwtb3m::MergeStrategyBlock::shared_ptr_type)’ at ./libmaus2/suffixsort/bwtb3m/MergeTree.hpp:49:28, inlined from ‘static std::shared_ptr libmaus2::suffixsort::bwtb3m::MergeStrategyConstruction::constructMergeTree(std::vector >, uint64_t, uint64_t, uint64_t, std::ostream*)’ at ./libmaus2/suffixsort/bwtb3m/MergeStrategyConstruction.hpp:165:54: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr::SparseGammaGapMergeInfo>; _Compare = std::less; _Alloc = std::allocator::SparseGammaGapMergeInfo> > >]’, inlined from ‘bool libmaus2::gamma::SparseGammaGapMultiFileLevelSetTemplate<_data_type>::checkMergePacket(uint64_t&, uint64_t&) [with _data_type = long long unsigned int]’ at ./libmaus2/gamma/SparseGammaGapMultiFileLevelSet.hpp:167:18: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree::SparseGammaGapMergeInfo> >, std::_Select1st::SparseGammaGapMergeInfo> > >, std::less, std::allocator::SparseGammaGapMergeInfo> > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h: In function ‘constexpr void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Distance = int; _Tp = pair; _Compare = libmaus2::sorting::MergingReadBack::HeapOrderAdapter]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:229:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 229 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr::SparseGammaGapMergeInfo>; _Compare = std::less; _Alloc = std::allocator::SparseGammaGapMergeInfo> > >]’, inlined from ‘typename libmaus2::gamma::SparseGammaGapMergeTemplate<_data_type>::SparseGammaGapMergeInfo* libmaus2::gamma::SparseGammaGapMultiFileLevelSetTemplate<_data_type>::queueMergeInfo(const libmaus2::gamma::SparseGammaGapMultiFile&, const libmaus2::gamma::SparseGammaGapMultiFile&) [with _data_type = long long unsigned int]’ at ./libmaus2/gamma/SparseGammaGapMultiFileLevelSet.hpp:197:18: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree::SparseGammaGapMergeInfo> >, std::_Select1st::SparseGammaGapMergeInfo> > >, std::less, std::allocator::SparseGammaGapMergeInfo> > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr::SparseGammaGapMergeInfo>; _Compare = std::less; _Alloc = std::allocator::SparseGammaGapMergeInfo> > >]’, inlined from ‘typename libmaus2::gamma::SparseGammaGapMergeTemplate<_data_type>::SparseGammaGapMergeInfo* libmaus2::gamma::SparseGammaGapMultiFileLevelSetTemplate<_data_type>::queueMergeInfo(const libmaus2::gamma::SparseGammaGapMultiFile&, const libmaus2::gamma::SparseGammaGapMultiFile&) [with _data_type = long long unsigned int]’ at ./libmaus2/gamma/SparseGammaGapMultiFileLevelSet.hpp:198:14: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree::SparseGammaGapMergeInfo> >, std::_Select1st::SparseGammaGapMergeInfo> > >, std::less, std::allocator::SparseGammaGapMergeInfo> > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h: In function ‘constexpr void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Distance = int; _Tp = pair; _Compare = libmaus2::sorting::SerialisingMergingReadBack >::HeapOrderAdapter]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:229:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 229 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h: In function ‘constexpr void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Distance = int; _Tp = pair; _Compare = libmaus2::sorting::SerialisingMergingReadBack::HeapOrderAdapter]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:229:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 In file included from ./libmaus2/wavelet/ImpCompactHuffmanWaveletTree.hpp:26, from ./libmaus2/lf/ImpCompactHuffmanWaveletLF.hpp:23, from ./libmaus2/suffixsort/bwtb3m/BwtMergeComputeSampledSA.hpp:24: ./libmaus2/huffman/HuffmanTree.hpp: In constructor ‘libmaus2::huffman::HuffmanTree::HuffmanTree(iterator, uint64_t, bool, bool, bool) [with iterator = std::_Rb_tree_iterator >]’: ./libmaus2/huffman/HuffmanTree.hpp:643:25: note: parameter passing for argument of type ‘std::_Rb_tree_iterator >’ changed in GCC 7.1 643 | HuffmanTree(iterator F, uint64_t const s, bool const sortbydepth = false, bool const rsetcode = false, bool const rdfsorder = false) | ^~~~~~~~~~~ In function ‘constexpr void std::pop_heap(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator > >; _Compare = less]’, inlined from ‘void std::priority_queue<_Tp, _Sequence, _Compare>::pop() [with _Tp = libmaus2::gamma::SparseGammaGapMultiFile; _Sequence = std::vector >; _Compare = std::less]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_queue.h:894:15, inlined from ‘std::vector > libmaus2::gamma::SparseGammaGapMultiFileLevelSetTemplate<_data_type>::merge(const std::string&, uint64_t) [with _data_type = long long unsigned int]’ at ./libmaus2/gamma/SparseGammaGapMultiFileLevelSet.hpp:387:30: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:334:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 334 | std::__pop_heap(__first, __last, __last, __comp); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘constexpr void std::pop_heap(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator > >; _Compare = less]’, inlined from ‘void std::priority_queue<_Tp, _Sequence, _Compare>::pop() [with _Tp = libmaus2::gamma::SparseGammaGapMultiFile; _Sequence = std::vector >; _Compare = std::less]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_queue.h:894:15, inlined from ‘std::vector > libmaus2::gamma::SparseGammaGapMultiFileLevelSetTemplate<_data_type>::merge(const std::string&, uint64_t) [with _data_type = long long unsigned int]’ at ./libmaus2/gamma/SparseGammaGapMultiFileLevelSet.hpp:388:31: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:334:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 334 | std::__pop_heap(__first, __last, __last, __comp); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘void libmaus2::suffixsort::bwtb3m::BwtMergeSortState::computeHuffmanTree()’, inlined from ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeBwt(const libmaus2::suffixsort::bwtb3m::BwtMergeSortOptions&, std::ostream*) [with input_types_type = libmaus2::suffixsort::Utf8InputTypes<64>]’ at ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:3936:30: ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:552:49: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::iterator’ changed in GCC 7.1 552 | ) | ^ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h:3250:7: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 3250 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = long long unsigned int; _Tp = std::deque; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘void libmaus2::gamma::SparseGammaGapMultiFileLevelSetTemplate<_data_type>::putFile(const std::vector >&) [with _data_type = long long unsigned int]’ at ./libmaus2/gamma/SparseGammaGapMultiFileLevelSet.hpp:225:20: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:559:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 559 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = long long unsigned int; _Tp = std::deque; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘void libmaus2::gamma::SparseGammaGapMultiFileLevelSetTemplate<_data_type>::putFile(const std::vector >&) [with _data_type = long long unsigned int]’ at ./libmaus2/gamma/SparseGammaGapMultiFileLevelSet.hpp:227:22: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:559:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 559 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = long long unsigned int; _Tp = std::deque; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘void libmaus2::gamma::SparseGammaGapMultiFileLevelSetTemplate<_data_type>::putFile(const std::vector >&) [with _data_type = long long unsigned int]’ at ./libmaus2/gamma/SparseGammaGapMultiFileLevelSet.hpp:228:21: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:559:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 559 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = long long unsigned int; _Tp = std::deque; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘void libmaus2::gamma::SparseGammaGapMultiFileLevelSetTemplate<_data_type>::putFile(const std::vector >&) [with _data_type = long long unsigned int]’ at ./libmaus2/gamma/SparseGammaGapMultiFileLevelSet.hpp:232:21: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:559:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 559 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 | std::tuple<>()); | ~~~~~~~~~~~~~~~ libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateUtf864.cpp -o libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplateUtf864.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/suffixsort/bwtb3m/la-BwtMergeComputeSampledSA.lo `test -f 'libmaus2/suffixsort/bwtb3m/BwtMergeComputeSampledSA.cpp' || echo './'`libmaus2/suffixsort/bwtb3m/BwtMergeComputeSampledSA.cpp libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtMergeComputeSampledSA.cpp -fPIC -DPIC -o libmaus2/suffixsort/bwtb3m/.libs/la-BwtMergeComputeSampledSA.o In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/util/IntervalTree.hpp:25, from ./libmaus2/gamma/GammaRLDecoder.hpp:28, from ./libmaus2/gamma/GammaRLEncoder.hpp:29, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:24, from ./libmaus2/suffixsort/bwtb3m/BwtMergeComputeSampledSA.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeComputeSampledSA.cpp:20: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/huffman/huffman.hpp:183, from ./libmaus2/huffman/CanonicalEncoder.hpp:26, from ./libmaus2/huffman/RLEncoder.hpp:25, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22: ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 2]’: ./libmaus2/huffman/HuffmanSorting.hpp:860:55: required from here 860 | huffman::EncodeTable enctable ( root ); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:188: ./libmaus2/huffman/HuffmanSorting.hpp: In instantiation of ‘static void libmaus2::huffman::HuffmanSorting::uncompressHuffmanCoded(uint64_t*, uint64_t, uint64_t, uint64_t, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::HuffmanTreeNode*, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::EncodeTable&) [with unsigned int lookupwords = 2; uint64_t = long long unsigned int]’: ./libmaus2/huffman/HuffmanSorting.hpp:1091:27: required from here 1091 | uncompressHuffmanCoded(acode.get(), 0 /* bit offset */, lowhalf /* syms */, firsthighsym, enctable,dectable,root.get(),dectable0,dectable1,enctable0,enctable1); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/huffman/HuffmanSorting.hpp:534:42: warning: variable ‘alldecoffset’ set but not used [-Wunused-but-set-variable=] 534 | uint64_t alldecoffset = highdecoffset; | ^~~~~~~~~~~~ ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 1]’: ./libmaus2/huffman/CanonicalEncoder.hpp:219:116: required from here 219 | return ::libmaus2::huffman::EncodeTable<1>::unique_ptr_type(new ::libmaus2::huffman::EncodeTable<1>(Ptree.get())); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtMergeComputeSampledSA.cpp -o libmaus2/suffixsort/bwtb3m/la-BwtMergeComputeSampledSA.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/parallel/la-SimpleThreadWorkPackage.lo `test -f 'libmaus2/parallel/SimpleThreadWorkPackage.cpp' || echo './'`libmaus2/parallel/SimpleThreadWorkPackage.cpp libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong 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-D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/demangle/la-Demangle.lo `test -f 'libmaus2/demangle/Demangle.cpp' || echo './'`libmaus2/demangle/Demangle.cpp libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/demangle/Demangle.cpp -fPIC -DPIC -o libmaus2/demangle/.libs/la-Demangle.o libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/demangle/Demangle.cpp -o libmaus2/demangle/la-Demangle.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -pthread -fopenmp -W 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/usr/lib/gcc-cross/arm-linux-gnueabihf/16/../../../../arm-linux-gnueabihf/lib/crtn.o -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-z -Wl,relro -Wl,-z -Wl,now -pthread -fopenmp -Wl,-soname -Wl,libmaus2_demangle.so.2 -o .libs/libmaus2_demangle.so.2.0.813 libtool: link: (cd ".libs" && rm -f "libmaus2_demangle.so.2" && ln -s "libmaus2_demangle.so.2.0.813" "libmaus2_demangle.so.2") libtool: link: (cd ".libs" && rm -f "libmaus2_demangle.so" && ln -s "libmaus2_demangle.so.2.0.813" "libmaus2_demangle.so") libtool: link: arm-linux-gnueabihf-ar cr .libs/libmaus2_demangle.a libmaus2/demangle/la-Demangle.o libtool: link: arm-linux-gnueabihf-ranlib .libs/libmaus2_demangle.a libtool: link: ( cd ".libs" && rm -f "libmaus2_demangle.la" && ln -s "../libmaus2_demangle.la" "libmaus2_demangle.la" ) /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -version-info 2:813:0 -L/lib -Wl,-z,relro -Wl,-z,now -o libmaus2_stacktrace.la -rpath /usr/lib/arm-linux-gnueabihf libmaus2/stacktrace/la-StackTrace.lo libmaus2/stacktrace/la-StackTraceBufferContainer.lo libmaus2_posix.la libmaus2_demangle.la -lz libtool: link: arm-linux-gnueabihf-g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc-cross/arm-linux-gnueabihf/16/../../../../arm-linux-gnueabihf/lib/crti.o /usr/lib/gcc-cross/arm-linux-gnueabihf/16/crtbeginS.o libmaus2/stacktrace/.libs/la-StackTrace.o libmaus2/stacktrace/.libs/la-StackTraceBufferContainer.o -Wl,-rpath -Wl,/build/reproducible-path/libmaus2-2.0.813+ds/src/.libs -L/lib ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so -lz -L/usr/lib/gcc-cross/arm-linux-gnueabihf/16 -L/usr/lib/gcc-cross/arm-linux-gnueabihf/16/../../../../arm-linux-gnueabihf/lib -L/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -L/usr/lib -lstdc++ -lm -lgcc_s -latomic_asneeded -lc -lgcc_s /usr/lib/gcc-cross/arm-linux-gnueabihf/16/crtendS.o /usr/lib/gcc-cross/arm-linux-gnueabihf/16/../../../../arm-linux-gnueabihf/lib/crtn.o -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-z -Wl,relro -Wl,-z -Wl,now -pthread -fopenmp -Wl,-soname -Wl,libmaus2_stacktrace.so.2 -o .libs/libmaus2_stacktrace.so.2.0.813 libtool: link: (cd ".libs" && rm -f "libmaus2_stacktrace.so.2" && ln -s "libmaus2_stacktrace.so.2.0.813" "libmaus2_stacktrace.so.2") libtool: link: (cd ".libs" && rm -f "libmaus2_stacktrace.so" && ln -s "libmaus2_stacktrace.so.2.0.813" "libmaus2_stacktrace.so") libtool: link: arm-linux-gnueabihf-ar cr .libs/libmaus2_stacktrace.a libmaus2/stacktrace/la-StackTrace.o libmaus2/stacktrace/la-StackTraceBufferContainer.o libtool: link: arm-linux-gnueabihf-ranlib .libs/libmaus2_stacktrace.a libtool: link: ( cd ".libs" && rm -f "libmaus2_stacktrace.la" && ln -s "../libmaus2_stacktrace.la" "libmaus2_stacktrace.la" ) /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/arch/la-I386Features.lo `test -f 'libmaus2/arch/I386Features.cpp' || echo './'`libmaus2/arch/I386Features.cpp libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/arch/I386Features.cpp -fPIC -DPIC -o libmaus2/arch/.libs/la-I386Features.o libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/arch/I386Features.cpp -o libmaus2/arch/la-I386Features.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/arch/la-CacheLineSize.lo `test -f 'libmaus2/arch/CacheLineSize.cpp' || echo './'`libmaus2/arch/CacheLineSize.cpp libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/arch/CacheLineSize.cpp -fPIC -DPIC -o libmaus2/arch/.libs/la-CacheLineSize.o libmaus2/arch/CacheLineSize.cpp: In function ‘uint64_t getCacheLineSizeLocal()’: libmaus2/arch/CacheLineSize.cpp:50:30: warning: format ‘%d’ expects argument of type ‘int*’, but argument 3 has type ‘uint64_t*’ {aka ‘long long unsigned int*’} [-Wformat=] 50 | fscanf(fp, "%d", &i); | ~^ ~~ | | | | | uint64_t* {aka long long unsigned int*} | int* | %lld libmaus2/arch/CacheLineSize.cpp:50:23: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 50 | fscanf(fp, "%d", &i); | ~~~~~~^~~~~~~~~~~~~~ libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/arch/CacheLineSize.cpp -o libmaus2/arch/la-CacheLineSize.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/arch/la-PageSize.lo `test -f 'libmaus2/arch/PageSize.cpp' || echo './'`libmaus2/arch/PageSize.cpp libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/arch/PageSize.cpp -fPIC -DPIC -o libmaus2/arch/.libs/la-PageSize.o libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/arch/PageSize.cpp -o libmaus2/arch/la-PageSize.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -version-info 2:813:0 -L/lib -Wl,-z,relro -Wl,-z,now -o libmaus2_arch.la -rpath /usr/lib/arm-linux-gnueabihf libmaus2/arch/la-I386Features.lo libmaus2/arch/la-CacheLineSize.lo libmaus2/arch/la-PageSize.lo -lz libtool: link: arm-linux-gnueabihf-g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc-cross/arm-linux-gnueabihf/16/../../../../arm-linux-gnueabihf/lib/crti.o /usr/lib/gcc-cross/arm-linux-gnueabihf/16/crtbeginS.o libmaus2/arch/.libs/la-I386Features.o libmaus2/arch/.libs/la-CacheLineSize.o libmaus2/arch/.libs/la-PageSize.o -L/lib -lz -L/usr/lib/gcc-cross/arm-linux-gnueabihf/16 -L/usr/lib/gcc-cross/arm-linux-gnueabihf/16/../../../../arm-linux-gnueabihf/lib -L/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -L/usr/lib -lstdc++ -lm -lgcc_s -latomic_asneeded -lc -lgcc_s /usr/lib/gcc-cross/arm-linux-gnueabihf/16/crtendS.o /usr/lib/gcc-cross/arm-linux-gnueabihf/16/../../../../arm-linux-gnueabihf/lib/crtn.o -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-z -Wl,relro -Wl,-z -Wl,now -pthread -fopenmp -Wl,-soname -Wl,libmaus2_arch.so.2 -o .libs/libmaus2_arch.so.2.0.813 libtool: link: (cd ".libs" && rm -f "libmaus2_arch.so.2" && ln -s "libmaus2_arch.so.2.0.813" "libmaus2_arch.so.2") libtool: link: (cd ".libs" && rm -f "libmaus2_arch.so" && ln -s "libmaus2_arch.so.2.0.813" "libmaus2_arch.so") libtool: link: arm-linux-gnueabihf-ar cr .libs/libmaus2_arch.a libmaus2/arch/la-I386Features.o libmaus2/arch/la-CacheLineSize.o libmaus2/arch/la-PageSize.o libtool: link: arm-linux-gnueabihf-ranlib .libs/libmaus2_arch.a libtool: link: ( cd ".libs" && rm -f "libmaus2_arch.la" && ln -s "../libmaus2_arch.la" "libmaus2_arch.la" ) /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -version-info 2:813:0 -L/lib -Wl,-z,relro -Wl,-z,now -o libmaus2_autoarray.la -rpath /usr/lib/arm-linux-gnueabihf libmaus2/autoarray/la-AutoArray.lo libmaus2_stacktrace.la libmaus2_demangle.la libmaus2_arch.la -lz libtool: link: arm-linux-gnueabihf-g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc-cross/arm-linux-gnueabihf/16/../../../../arm-linux-gnueabihf/lib/crti.o /usr/lib/gcc-cross/arm-linux-gnueabihf/16/crtbeginS.o libmaus2/autoarray/.libs/la-AutoArray.o -Wl,-rpath -Wl,/build/reproducible-path/libmaus2-2.0.813+ds/src/.libs -L/lib ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so -lz -L/usr/lib/gcc-cross/arm-linux-gnueabihf/16 -L/usr/lib/gcc-cross/arm-linux-gnueabihf/16/../../../../arm-linux-gnueabihf/lib -L/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -L/usr/lib -lstdc++ -lm -lgcc_s -latomic_asneeded -lc -lgcc_s /usr/lib/gcc-cross/arm-linux-gnueabihf/16/crtendS.o /usr/lib/gcc-cross/arm-linux-gnueabihf/16/../../../../arm-linux-gnueabihf/lib/crtn.o -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-z -Wl,relro -Wl,-z -Wl,now -pthread -fopenmp -Wl,-soname -Wl,libmaus2_autoarray.so.2 -o .libs/libmaus2_autoarray.so.2.0.813 libtool: link: (cd ".libs" && rm -f "libmaus2_autoarray.so.2" && ln -s "libmaus2_autoarray.so.2.0.813" "libmaus2_autoarray.so.2") libtool: link: (cd ".libs" && rm -f "libmaus2_autoarray.so" && ln -s "libmaus2_autoarray.so.2.0.813" "libmaus2_autoarray.so") libtool: link: arm-linux-gnueabihf-ar cr .libs/libmaus2_autoarray.a libmaus2/autoarray/la-AutoArray.o libtool: link: arm-linux-gnueabihf-ranlib .libs/libmaus2_autoarray.a libtool: link: ( cd ".libs" && rm -f "libmaus2_autoarray.la" && ln -s "../libmaus2_autoarray.la" "libmaus2_autoarray.la" ) /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/exception/la-LibMausException.lo `test -f 'libmaus2/exception/LibMausException.cpp' || echo './'`libmaus2/exception/LibMausException.cpp libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/exception/LibMausException.cpp -fPIC -DPIC -o libmaus2/exception/.libs/la-LibMausException.o libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/exception/LibMausException.cpp -o libmaus2/exception/la-LibMausException.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -version-info 2:813:0 -L/lib -Wl,-z,relro -Wl,-z,now -o libmaus2_exception.la -rpath /usr/lib/arm-linux-gnueabihf libmaus2/exception/la-LibMausException.lo libmaus2_stacktrace.la libmaus2_demangle.la -lz libtool: link: arm-linux-gnueabihf-g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc-cross/arm-linux-gnueabihf/16/../../../../arm-linux-gnueabihf/lib/crti.o /usr/lib/gcc-cross/arm-linux-gnueabihf/16/crtbeginS.o libmaus2/exception/.libs/la-LibMausException.o -Wl,-rpath -Wl,/build/reproducible-path/libmaus2-2.0.813+ds/src/.libs -L/lib ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_demangle.so -lz -L/usr/lib/gcc-cross/arm-linux-gnueabihf/16 -L/usr/lib/gcc-cross/arm-linux-gnueabihf/16/../../../../arm-linux-gnueabihf/lib -L/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -L/usr/lib -lstdc++ -lm -lgcc_s -latomic_asneeded -lc -lgcc_s /usr/lib/gcc-cross/arm-linux-gnueabihf/16/crtendS.o /usr/lib/gcc-cross/arm-linux-gnueabihf/16/../../../../arm-linux-gnueabihf/lib/crtn.o -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-z -Wl,relro -Wl,-z -Wl,now -pthread -fopenmp -Wl,-soname -Wl,libmaus2_exception.so.2 -o .libs/libmaus2_exception.so.2.0.813 libtool: link: (cd ".libs" && rm -f "libmaus2_exception.so.2" && ln -s "libmaus2_exception.so.2.0.813" "libmaus2_exception.so.2") libtool: link: (cd ".libs" && rm -f "libmaus2_exception.so" && ln -s "libmaus2_exception.so.2.0.813" "libmaus2_exception.so") libtool: link: arm-linux-gnueabihf-ar cr .libs/libmaus2_exception.a libmaus2/exception/la-LibMausException.o libtool: link: arm-linux-gnueabihf-ranlib .libs/libmaus2_exception.a libtool: link: ( cd ".libs" && rm -f "libmaus2_exception.la" && ln -s "../libmaus2_exception.la" "libmaus2_exception.la" ) /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -version-info 2:813:0 -L/lib -Wl,-z,relro -Wl,-z,now -o libmaus2_parallel.la -rpath /usr/lib/arm-linux-gnueabihf libmaus2/parallel/la-SimpleThreadWorkPackage.lo libmaus2/parallel/la-StdSemaphore.lo libmaus2/parallel/la-StdMutex.lo libmaus2/parallel/la-StdSpinLock.lo libmaus2/parallel/la-StaticInitialisation.lo libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_demangle.la libmaus2_arch.la -lz libtool: link: arm-linux-gnueabihf-g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc-cross/arm-linux-gnueabihf/16/../../../../arm-linux-gnueabihf/lib/crti.o /usr/lib/gcc-cross/arm-linux-gnueabihf/16/crtbeginS.o libmaus2/parallel/.libs/la-SimpleThreadWorkPackage.o libmaus2/parallel/.libs/la-StdSemaphore.o libmaus2/parallel/.libs/la-StdMutex.o libmaus2/parallel/.libs/la-StdSpinLock.o libmaus2/parallel/.libs/la-StaticInitialisation.o -Wl,-rpath -Wl,/build/reproducible-path/libmaus2-2.0.813+ds/src/.libs -L/lib ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so -lz -L/usr/lib/gcc-cross/arm-linux-gnueabihf/16 -L/usr/lib/gcc-cross/arm-linux-gnueabihf/16/../../../../arm-linux-gnueabihf/lib -L/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -L/usr/lib -lstdc++ -lm -lgcc_s -latomic_asneeded -lc -lgcc_s /usr/lib/gcc-cross/arm-linux-gnueabihf/16/crtendS.o /usr/lib/gcc-cross/arm-linux-gnueabihf/16/../../../../arm-linux-gnueabihf/lib/crtn.o -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-z -Wl,relro -Wl,-z -Wl,now -pthread -fopenmp -Wl,-soname -Wl,libmaus2_parallel.so.2 -o .libs/libmaus2_parallel.so.2.0.813 libtool: link: (cd ".libs" && rm -f "libmaus2_parallel.so.2" && ln -s "libmaus2_parallel.so.2.0.813" "libmaus2_parallel.so.2") libtool: link: (cd ".libs" && rm -f "libmaus2_parallel.so" && ln -s "libmaus2_parallel.so.2.0.813" "libmaus2_parallel.so") libtool: link: arm-linux-gnueabihf-ar cr .libs/libmaus2_parallel.a libmaus2/parallel/la-SimpleThreadWorkPackage.o libmaus2/parallel/la-StdSemaphore.o libmaus2/parallel/la-StdMutex.o libmaus2/parallel/la-StdSpinLock.o libmaus2/parallel/la-StaticInitialisation.o libtool: link: arm-linux-gnueabihf-ranlib .libs/libmaus2_parallel.a libtool: link: ( cd ".libs" && rm -f "libmaus2_parallel.la" && ln -s "../libmaus2_parallel.la" "libmaus2_parallel.la" ) /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -version-info 2:813:0 -L/lib -Wl,-z,relro -Wl,-z,now -o libmaus2.la -rpath /usr/lib/arm-linux-gnueabihf libmaus2/la-StaticInitialization.lo libmaus2/bitio/la-CompactArray.lo 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-DPIC -o libmaus2/lcs/.libs/simd_align_256_la-SimdX86GlobalAlignmentY256_8.o libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lcs/SimdX86GlobalAlignmentY256_8.cpp -o libmaus2/lcs/simd_align_256_la-SimdX86GlobalAlignmentY256_8.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g 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arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lcs/SimdX86GlobalAlignmentY256_16.cpp -o libmaus2/lcs/simd_align_256_la-SimdX86GlobalAlignmentY256_16.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/lcs/simd_align_256_la-AlignmentOneAgainstManyAVX2.lo `test -f 'libmaus2/lcs/AlignmentOneAgainstManyAVX2.cpp' || echo './'`libmaus2/lcs/AlignmentOneAgainstManyAVX2.cpp libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lcs/AlignmentOneAgainstManyAVX2.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/simd_align_256_la-AlignmentOneAgainstManyAVX2.o In file included from ./libmaus2/lcs/Aligner.hpp:21, from ./libmaus2/lcs/NP.hpp:21, from ./libmaus2/lcs/AlignmentOneAgainstManyAVX2.hpp:23, from libmaus2/lcs/AlignmentOneAgainstManyAVX2.cpp:19: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lcs/AlignmentOneAgainstManyAVX2.cpp -o libmaus2/lcs/simd_align_256_la-AlignmentOneAgainstManyAVX2.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -version-info 2:813:0 -Wl,-z,relro -Wl,-z,now -o libmaus2_simd_align_256.la -rpath /usr/lib/arm-linux-gnueabihf libmaus2/lcs/simd_align_256_la-SimdX86GlobalAlignmentConstants256.lo libmaus2/lcs/simd_align_256_la-SimdX86BandedGlobalAlignmentY256_8.lo libmaus2/lcs/simd_align_256_la-SimdX86BandedGlobalAlignmentY256_16.lo libmaus2/lcs/simd_align_256_la-SimdX86BandedGlobalAlignmentScoreY256_16.lo libmaus2/lcs/simd_align_256_la-SimdX86GlobalAlignmentY256_8.lo libmaus2/lcs/simd_align_256_la-SimdX86GlobalAlignmentY256_16.lo libmaus2/lcs/simd_align_256_la-AlignmentOneAgainstManyAVX2.lo libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la -lz libtool: link: arm-linux-gnueabihf-g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc-cross/arm-linux-gnueabihf/16/../../../../arm-linux-gnueabihf/lib/crti.o /usr/lib/gcc-cross/arm-linux-gnueabihf/16/crtbeginS.o libmaus2/lcs/.libs/simd_align_256_la-SimdX86GlobalAlignmentConstants256.o libmaus2/lcs/.libs/simd_align_256_la-SimdX86BandedGlobalAlignmentY256_8.o libmaus2/lcs/.libs/simd_align_256_la-SimdX86BandedGlobalAlignmentY256_16.o libmaus2/lcs/.libs/simd_align_256_la-SimdX86BandedGlobalAlignmentScoreY256_16.o libmaus2/lcs/.libs/simd_align_256_la-SimdX86GlobalAlignmentY256_8.o libmaus2/lcs/.libs/simd_align_256_la-SimdX86GlobalAlignmentY256_16.o libmaus2/lcs/.libs/simd_align_256_la-AlignmentOneAgainstManyAVX2.o -Wl,-rpath -Wl,/build/reproducible-path/libmaus2-2.0.813+ds/src/.libs ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so -lz -L/usr/lib/gcc-cross/arm-linux-gnueabihf/16 -L/usr/lib/gcc-cross/arm-linux-gnueabihf/16/../../../../arm-linux-gnueabihf/lib -L/lib/arm-linux-gnueabihf -L/lib -L/usr/lib/arm-linux-gnueabihf -L/usr/lib -lstdc++ -lm -lgcc_s -latomic_asneeded -lc -lgcc_s /usr/lib/gcc-cross/arm-linux-gnueabihf/16/crtendS.o /usr/lib/gcc-cross/arm-linux-gnueabihf/16/../../../../arm-linux-gnueabihf/lib/crtn.o -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-z -Wl,relro -Wl,-z -Wl,now -pthread -fopenmp -Wl,-soname -Wl,libmaus2_simd_align_256.so.2 -o .libs/libmaus2_simd_align_256.so.2.0.813 libtool: link: (cd ".libs" && rm -f "libmaus2_simd_align_256.so.2" && ln -s "libmaus2_simd_align_256.so.2.0.813" "libmaus2_simd_align_256.so.2") libtool: link: (cd ".libs" && rm -f "libmaus2_simd_align_256.so" && ln -s "libmaus2_simd_align_256.so.2.0.813" "libmaus2_simd_align_256.so") libtool: link: arm-linux-gnueabihf-ar cr .libs/libmaus2_simd_align_256.a libmaus2/lcs/simd_align_256_la-SimdX86GlobalAlignmentConstants256.o libmaus2/lcs/simd_align_256_la-SimdX86BandedGlobalAlignmentY256_8.o libmaus2/lcs/simd_align_256_la-SimdX86BandedGlobalAlignmentY256_16.o libmaus2/lcs/simd_align_256_la-SimdX86BandedGlobalAlignmentScoreY256_16.o libmaus2/lcs/simd_align_256_la-SimdX86GlobalAlignmentY256_8.o libmaus2/lcs/simd_align_256_la-SimdX86GlobalAlignmentY256_16.o libmaus2/lcs/simd_align_256_la-AlignmentOneAgainstManyAVX2.o libtool: link: arm-linux-gnueabihf-ranlib .libs/libmaus2_simd_align_256.a libtool: link: ( cd ".libs" && rm -f "libmaus2_simd_align_256.la" && ln -s "../libmaus2_simd_align_256.la" "libmaus2_simd_align_256.la" ) /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testThreadPool test/testThreadPool-testThreadPool.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testThreadPool test/testThreadPool-testThreadPool.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testThreadPoolRead-testThreadPoolRead.o `test -f 'test/testThreadPoolRead.cpp' || echo './'`test/testThreadPoolRead.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testThreadPoolRead test/testThreadPoolRead-testThreadPoolRead.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testThreadPoolRead test/testThreadPoolRead-testThreadPoolRead.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testThreadPoolBgzfRead-testThreadPoolBgzfRead.o `test -f 'test/testThreadPoolBgzfRead.cpp' || echo './'`test/testThreadPoolBgzfRead.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testThreadPoolBgzfRead test/testThreadPoolBgzfRead-testThreadPoolBgzfRead.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testThreadPoolBgzfRead test/testThreadPoolBgzfRead-testThreadPoolBgzfRead.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testThreadPoolBgzfDecompress-testThreadPoolBgzfDecompress.o `test -f 'test/testThreadPoolBgzfDecompress.cpp' || echo './'`test/testThreadPoolBgzfDecompress.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testThreadPoolBgzfDecompress test/testThreadPoolBgzfDecompress-testThreadPoolBgzfDecompress.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testThreadPoolBgzfDecompress test/testThreadPoolBgzfDecompress-testThreadPoolBgzfDecompress.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testThreadPoolBamParse-testThreadPoolBamParse.o `test -f 'test/testThreadPoolBamParse.cpp' || echo './'`test/testThreadPoolBamParse.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testThreadPoolBamParse test/testThreadPoolBamParse-testThreadPoolBamParse.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testThreadPoolBamParse test/testThreadPoolBamParse-testThreadPoolBamParse.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testThreadPoolBamAccumulate-testThreadPoolBamAccumulate.o `test -f 'test/testThreadPoolBamAccumulate.cpp' || echo './'`test/testThreadPoolBamAccumulate.cpp In file included from ./libmaus2/parallel/threadpool/bam/ThreadPoolBamParseAccumulateHandler.hpp:22, from test/testThreadPoolBamAccumulate.cpp:18: ./libmaus2/util/AtomicArray.hpp:45:43: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 45 | AtomicArray(AtomicArray const & O) = delete; | ^~~~~~~~~~~~~~~~~ ./libmaus2/util/AtomicArray.hpp:45:43: note: remove the ‘< >’ In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/bambam/BamAuxFilterVector.hpp:22, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:27, from ./libmaus2/parallel/threadpool/bam/ThreadPoolBamParseAccumulateHandler.hpp:23: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/bambam/CigarStringParser.hpp:25, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/parallel/threadpool/bam/ThreadPoolBamParseAccumulateHandler.hpp: In member function ‘virtual void libmaus2::parallel::threadpool::bam::ThreadPoolBamParseAccumulateHandler::sortFinished(libmaus2::util::shared_ptr, libmaus2::util::shared_ptr)’: ./libmaus2/parallel/threadpool/bam/ThreadPoolBamParseAccumulateHandler.hpp:1331:99: warning: unused variable ‘final’ [-Wunused-variable] 1331 | libmaus2::util::AtomicArray const & final = ptr->getFinal(); | ^~~~~ /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testThreadPoolBamAccumulate test/testThreadPoolBamAccumulate-testThreadPoolBamAccumulate.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testThreadPoolBamAccumulate test/testThreadPoolBamAccumulate-testThreadPoolBamAccumulate.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testThreadPoolCramEncode-testThreadPoolCramEncode.o `test -f 'test/testThreadPoolCramEncode.cpp' || echo './'`test/testThreadPoolCramEncode.cpp In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/util/IntervalTree.hpp:25, from ./libmaus2/fastx/FastInterval.hpp:25, from ./libmaus2/fastx/FastAReader.hpp:31, from test/testThreadPoolCramEncode.cpp:25: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testThreadPoolCramEncode test/testThreadPoolCramEncode-testThreadPoolCramEncode.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testThreadPoolCramEncode test/testThreadPoolCramEncode-testThreadPoolCramEncode.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testAIO-testAIO.o `test -f 'test/testAIO.cpp' || echo './'`test/testAIO.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/16/algorithm:63, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/aio/MemoryFile.hpp:23, from ./libmaus2/aio/MemoryFileAdapter.hpp:23, from ./libmaus2/aio/MemoryFileContainer.hpp:22, from ./libmaus2/aio/FileRemoval.hpp:22, from test/testAIO.cpp:22: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h: In function ‘constexpr void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = less]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1770:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1770 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1770:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:61: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h: In function ‘constexpr void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = SerObject; _Compare = less]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:229:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 229 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h: In function ‘constexpr void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = less]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1884:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1884 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1884:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1898:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1898 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h: In function ‘constexpr void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Distance = int; _Tp = pair; _Compare = libmaus2::sorting::SerialisingMergingReadBack >::HeapOrderAdapter]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:229:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 229 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In function ‘constexpr void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = less]’, inlined from ‘constexpr void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:4817:18, inlined from ‘void testSerialisingSorting()’ at test/testAIO.cpp:531:11: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1913:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1913 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1914 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1915 | __comp); | ~~~~~~~ In function ‘constexpr void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = less]’, inlined from ‘constexpr void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = less]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1916:31, inlined from ‘constexpr void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:4817:18, inlined from ‘void testSerialisingSorting()’ at test/testAIO.cpp:531:11: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1821:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1821 | std::__insertion_sort(__first, __first + __threshold, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1826:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1826 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testAIO test/testAIO-testAIO.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testAIO test/testAIO-testAIO.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testbitbtree-testbitbtree.o `test -f 'test/testbitbtree.cpp' || echo './'`test/testbitbtree.cpp In file included from test/testbitbtree.cpp:20: ./libmaus2/bitbtree/bitbtree.hpp: In member function ‘libmaus2::bitbtree::BitBTree::InsertInfo libmaus2::bitbtree::BitBTree::insertBit(uint64_t, uint64_t, bool, uint64_t) [with unsigned int k = 1; unsigned int w = 1]’: ./libmaus2/bitbtree/bitbtree.hpp:1485:123: warning: array subscript 2 is above array bounds of ‘libmaus2::bitbtree::BitBTreeInnerNode::data_type [2]’ {aka ‘libmaus2::bitbtree::BitBTreeInnerNodeData [2]’} [-Warray-bounds=] 1485 | uint64_t const right_ptr = innernode->data[right_index].ptr; | ~~~~~~~~~~~~~~~^ ./libmaus2/bitbtree/bitbtree.hpp:77:35: note: while referencing ‘libmaus2::bitbtree::BitBTreeInnerNode::data’ 77 | data_type data[2*k]; | ^~~~ ./libmaus2/bitbtree/bitbtree.hpp:1491:123: warning: array subscript 2 is above array bounds of ‘libmaus2::bitbtree::BitBTreeInnerNode::data_type [2]’ {aka ‘libmaus2::bitbtree::BitBTreeInnerNodeData [2]’} [-Warray-bounds=] 1491 | uint64_t const right_cnt = innernode->data[right_index].cnt; | ~~~~~~~~~~~~~~~^ ./libmaus2/bitbtree/bitbtree.hpp:77:35: note: while referencing ‘libmaus2::bitbtree::BitBTreeInnerNode::data’ 77 | data_type data[2*k]; | ^~~~ ./libmaus2/bitbtree/bitbtree.hpp:1550:112: warning: array subscript 2 is above array bounds of ‘libmaus2::bitbtree::BitBTreeInnerNode::data_type [2]’ {aka ‘libmaus2::bitbtree::BitBTreeInnerNodeData [2]’} [-Warray-bounds=] 1550 | innernode->data[right_index].cnt = new_right_cnt; | ~~~~~~~~~~~~~~~^ ./libmaus2/bitbtree/bitbtree.hpp:77:35: note: while referencing ‘libmaus2::bitbtree::BitBTreeInnerNode::data’ 77 | data_type data[2*k]; | ^~~~ ./libmaus2/bitbtree/bitbtree.hpp:1551:112: warning: array subscript 2 is above array bounds of ‘libmaus2::bitbtree::BitBTreeInnerNode::data_type [2]’ {aka ‘libmaus2::bitbtree::BitBTreeInnerNodeData [2]’} [-Warray-bounds=] 1551 | innernode->data[right_index].bcnt = right_leaf->data.rank1(new_right_cnt-1); | ~~~~~~~~~~~~~~~^ ./libmaus2/bitbtree/bitbtree.hpp:77:35: note: while referencing ‘libmaus2::bitbtree::BitBTreeInnerNode::data’ 77 | data_type data[2*k]; | ^~~~ /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testbitbtree test/testbitbtree-testbitbtree.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testbitbtree test/testbitbtree-testbitbtree.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testBitIO-testBitIO.o `test -f 'test/testBitIO.cpp' || echo './'`test/testBitIO.cpp In file included from ./libmaus2/bitio/BitVector.hpp:29, from test/testBitIO.cpp:30: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from /usr/arm-linux-gnueabihf/include/c++/16/algorithm:63, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/util/GetFileSize.hpp:24, from ./libmaus2/aio/SynchronousGenericInput.hpp:23, from ./libmaus2/bitio/BitVectorInput.hpp:22, from test/testBitIO.cpp:20: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h: In function ‘constexpr void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = less]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1884:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1884 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1884:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1898:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1898 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘constexpr void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = less]’, inlined from ‘constexpr void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:4817:18, inlined from ‘void bubbleSortCheck()’ at test/testBitIO.cpp:266:13: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1913:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1913 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1914 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1915 | __comp); | ~~~~~~~ In file included from test/testBitIO.cpp:27: In member function ‘void libmaus2::bitio::CompactOffsetOneArray::putBits(uint64_t, uint64_t)’, inlined from ‘void libmaus2::bitio::CompactOffsetOneArray::set(uint64_t, uint64_t)’ at ./libmaus2/bitio/CompactOffsetOneArray.hpp:59:46, inlined from ‘int main()’ at test/testBitIO.cpp:722:8: ./libmaus2/bitio/CompactOffsetOneArray.hpp:369:50: warning: array subscript 1 is outside array bounds of ‘uint64_t [1]’ {aka ‘long long unsigned int [1]’} [-Warray-bounds=] 369 | uint64_t t = *DD; | ^ test/testBitIO.cpp: In function ‘int main()’: test/testBitIO.cpp:719:26: note: at offset 8 into object ‘v’ of size 8 719 | uint64_t v = -1; | ^ In member function ‘void libmaus2::bitio::CompactOffsetOneArray::putBits(uint64_t, uint64_t)’, inlined from ‘void libmaus2::bitio::CompactOffsetOneArray::set(uint64_t, uint64_t)’ at ./libmaus2/bitio/CompactOffsetOneArray.hpp:59:46, inlined from ‘int main()’ at test/testBitIO.cpp:722:8: ./libmaus2/bitio/CompactOffsetOneArray.hpp:372:45: warning: array subscript 1 is outside array bounds of ‘uint64_t [1]’ {aka ‘long long unsigned int [1]’} [-Warray-bounds=] 372 | *DD = t; | ~~~~^~~ test/testBitIO.cpp: In function ‘int main()’: test/testBitIO.cpp:719:26: note: at offset 8 into object ‘v’ of size 8 719 | uint64_t v = -1; | ^ In member function ‘void libmaus2::bitio::CompactOffsetOneArray::putBits(uint64_t, uint64_t)’, inlined from ‘void libmaus2::bitio::CompactOffsetOneArray::set(uint64_t, uint64_t)’ at ./libmaus2/bitio/CompactOffsetOneArray.hpp:59:46, inlined from ‘int main()’ at test/testBitIO.cpp:723:8: ./libmaus2/bitio/CompactOffsetOneArray.hpp:369:50: warning: array subscript 1 is outside array bounds of ‘uint64_t [1]’ {aka ‘long long unsigned int [1]’} [-Warray-bounds=] 369 | uint64_t t = *DD; | ^ test/testBitIO.cpp: In function ‘int main()’: test/testBitIO.cpp:719:26: note: at offset 8 into object ‘v’ of size 8 719 | uint64_t v = -1; | ^ In member function ‘void libmaus2::bitio::CompactOffsetOneArray::putBits(uint64_t, uint64_t)’, inlined from ‘void libmaus2::bitio::CompactOffsetOneArray::set(uint64_t, uint64_t)’ at ./libmaus2/bitio/CompactOffsetOneArray.hpp:59:46, inlined from ‘int main()’ at test/testBitIO.cpp:723:8: ./libmaus2/bitio/CompactOffsetOneArray.hpp:372:45: warning: array subscript 1 is outside array bounds of ‘uint64_t [1]’ {aka ‘long long unsigned int [1]’} [-Warray-bounds=] 372 | *DD = t; | ~~~~^~~ test/testBitIO.cpp: In function ‘int main()’: test/testBitIO.cpp:719:26: note: at offset 8 into object ‘v’ of size 8 719 | uint64_t v = -1; | ^ /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testBitIO test/testBitIO-testBitIO.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testBitIO test/testBitIO-testBitIO.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testbtree-testbtree.o `test -f 'test/testbtree.cpp' || echo './'`test/testbtree.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testbtree test/testbtree-testbtree.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testbtree test/testbtree-testbtree.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testBWTDyn-testBWTDyn.o `test -f 'test/testBWTDyn.cpp' || echo './'`test/testBWTDyn.cpp In file included from ./libmaus2/huffman/huffman.hpp:183, from test/testBWTDyn.cpp:22: ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 2]’: ./libmaus2/huffman/HuffmanSorting.hpp:860:55: required from here 860 | huffman::EncodeTable enctable ( root ); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:188: ./libmaus2/huffman/HuffmanSorting.hpp: In instantiation of ‘static void libmaus2::huffman::HuffmanSorting::uncompressHuffmanCoded(uint64_t*, uint64_t, uint64_t, uint64_t, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::HuffmanTreeNode*, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::EncodeTable&) [with unsigned int lookupwords = 2; uint64_t = long long unsigned int]’: ./libmaus2/huffman/HuffmanSorting.hpp:1091:27: required from here 1091 | uncompressHuffmanCoded(acode.get(), 0 /* bit offset */, lowhalf /* syms */, firsthighsym, enctable,dectable,root.get(),dectable0,dectable1,enctable0,enctable1); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/huffman/HuffmanSorting.hpp:534:42: warning: variable ‘alldecoffset’ set but not used [-Wunused-but-set-variable=] 534 | uint64_t alldecoffset = highdecoffset; | ^~~~~~~~~~~~ ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 4]’: test/testBWTDyn.cpp:103:52: required from here 103 | ::libmaus2::huffman::EncodeTable<4> enctable(hnode); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testBWTDyn test/testBWTDyn-testBWTDyn.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testBWTDyn test/testBWTDyn-testBWTDyn.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testBWTHufDyn-testBWTHufDyn.o `test -f 'test/testBWTHufDyn.cpp' || echo './'`test/testBWTHufDyn.cpp In file included from ./libmaus2/huffman/huffman.hpp:183, from ./libmaus2/wavelet/DynamicHuffmanWaveletTree.hpp:24, from test/testBWTHufDyn.cpp:20: ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 2]’: ./libmaus2/huffman/HuffmanSorting.hpp:860:55: required from here 860 | huffman::EncodeTable enctable ( root ); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:188: ./libmaus2/huffman/HuffmanSorting.hpp: In instantiation of ‘static void libmaus2::huffman::HuffmanSorting::uncompressHuffmanCoded(uint64_t*, uint64_t, uint64_t, uint64_t, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::HuffmanTreeNode*, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::EncodeTable&) [with unsigned int lookupwords = 2; uint64_t = long long unsigned int]’: ./libmaus2/huffman/HuffmanSorting.hpp:1091:27: required from here 1091 | uncompressHuffmanCoded(acode.get(), 0 /* bit offset */, lowhalf /* syms */, firsthighsym, enctable,dectable,root.get(),dectable0,dectable1,enctable0,enctable1); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/huffman/HuffmanSorting.hpp:534:42: warning: variable ‘alldecoffset’ set but not used [-Wunused-but-set-variable=] 534 | uint64_t alldecoffset = highdecoffset; | ^~~~~~~~~~~~ ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 1]’: ./libmaus2/wavelet/HuffmanWaveletTree.hpp:406:49: required from here 406 | : n(rn), aroot(raroot), root(aroot.get()), enctable(root), acode(racode), code(acode.get()), | ^~~~~~~~~~~~~~ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 4]’: test/testBWTHufDyn.cpp:120:52: required from here 120 | ::libmaus2::huffman::EncodeTable<4> enctable(hnode); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/16/map:64, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:51, from ./libmaus2/bitbtree/bitbtree.hpp:29, from ./libmaus2/wavelet/DynamicHuffmanWaveletTree.hpp:23: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h:3250:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 3250 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/16/map:65: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = long long int; _Tp = long long unsigned int; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘void computeBWT(const std::string&, std::ostream&)’ at test/testBWTHufDyn.cpp:148:10: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:559:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 559 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = long long int; _Tp = long long unsigned int; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘void computeBWT(const std::string&, std::ostream&)’ at test/testBWTHufDyn.cpp:149:9: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:559:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 559 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testBWTHufDyn test/testBWTHufDyn-testBWTHufDyn.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testBWTHufDyn test/testBWTHufDyn-testBWTHufDyn.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testDivSufSort-testDivSufSort.o `test -f 'test/testDivSufSort.cpp' || echo './'`test/testDivSufSort.cpp In file included from ./libmaus2/lf/LF.hpp:24, from ./libmaus2/fm/SampledSA.hpp:23, from ./libmaus2/lcp/LCP.hpp:27, from test/testDivSufSort.cpp:26: ./libmaus2/wavelet/WaveletTree.hpp: In instantiation of ‘std::pair<_symbol_type, long long unsigned int> libmaus2::wavelet::WaveletTree<_rank_type, _symbol_type>::inverseSelect(uint64_t) const [with _rank_type = libmaus2::rank::ERank222BTemplate; _symbol_type = long long unsigned int; uint64_t = long long unsigned int]’: ./libmaus2/lf/LFBase.hpp:166:83: required from ‘uint64_t libmaus2::lf::LFBase<_wt_type>::operator()(uint64_t) const [with _wt_type = libmaus2::wavelet::WaveletTree, long long unsigned int>; uint64_t = long long unsigned int]’ 166 | std::pair< typename wt_type::symbol_type,uint64_t> const is = W->inverseSelect(r); | ~~~~~~~~~~~~~~~~^~~ ./libmaus2/fm/SampledSA.hpp:322:15: required from ‘libmaus2::fm::SimpleSampledSA::SimpleSampledSA(const lf_type*, uint64_t, bool) [with lf_type = libmaus2::lf::LF; uint64_t = long long unsigned int]’ 322 | r = (*lf)(r); // LF mapping | ~~~~~^~~ test/testDivSufSort.cpp:71:67: required from here 71 | ::libmaus2::fm::SimpleSampledSA< ::libmaus2::lf::LF > SSA(&LF,2); | ^ ./libmaus2/wavelet/WaveletTree.hpp:1333:75: warning: variable ‘m’ set but not used [-Wunused-but-set-variable=] 1333 | uint64_t left = 0, right = n, offset = 0, m = (1ull<<(b-1)); | ^ In file included from /usr/arm-linux-gnueabihf/include/c++/16/map:64, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:51, from ./libmaus2/bitio/CompactArray.hpp:23, from test/testDivSufSort.cpp:20: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h:3250:7: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 3250 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair > >; _KeyOfValue = std::_Select1st > > >; _Compare = std::less; _Alloc = std::allocator > > >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h:3250:7: note: parameter passing for argument of type ‘std::_Rb_tree > >, std::_Select1st > > >, std::less, std::allocator > > > >::const_iterator’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair > >; _KeyOfValue = std::_Select1st > > >; _Compare = std::less; _Alloc = std::allocator > > >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h:3250:7: note: parameter passing for argument of type ‘std::_Rb_tree > >, std::_Select1st > > >, std::less, std::allocator > > > >::const_iterator’ changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/16/map:65: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr >; _Compare = std::less; _Alloc = std::allocator > > >]’, inlined from ‘virtual std::ostream& libmaus2::util::MemTempFileContainer::getOutputTempFile(uint64_t)’ at ./libmaus2/util/MemTempFileContainer.hpp:52:27: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree > >, std::_Select1st > > >, std::less, std::allocator > > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h:3250:7: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 3250 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h:3250:7: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘virtual std::ostream& libmaus2::util::FileTempFileContainer::getOutputTempFile(uint64_t)’ at ./libmaus2/util/FileTempFileContainer.hpp:93:27: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::__cxx11::basic_string; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘virtual void libmaus2::util::MemTempFileContainer::closeOutputTempFile(uint64_t)’ at ./libmaus2/util/MemTempFileContainer.hpp:59:13: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::__cxx11::basic_string; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘virtual std::ostream& libmaus2::util::FileTempFileContainer::openOutputTempFile(uint64_t)’ at ./libmaus2/util/FileTempFileContainer.hpp:79:17: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::__cxx11::basic_string; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘virtual std::ostream& libmaus2::util::FileTempFileContainer::openOutputTempFile(uint64_t)’ at ./libmaus2/util/FileTempFileContainer.hpp:80:71: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::__cxx11::basic_string; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘virtual std::ostream& libmaus2::util::FileTempFileContainer::openOutputTempFile(uint64_t)’ at ./libmaus2/util/FileTempFileContainer.hpp:81:80: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘virtual std::ostream& libmaus2::util::FileTempFileContainer::openOutputTempFile(uint64_t)’ at ./libmaus2/util/FileTempFileContainer.hpp:81:18: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘virtual std::ostream& libmaus2::util::FileTempFileContainer::openOutputTempFile(uint64_t)’ at ./libmaus2/util/FileTempFileContainer.hpp:82:27: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘virtual std::istream& libmaus2::util::FileTempFileContainer::openInputTempFile(uint64_t)’ at ./libmaus2/util/FileTempFileContainer.hpp:121:17: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘virtual std::istream& libmaus2::util::FileTempFileContainer::openInputTempFile(uint64_t)’ at ./libmaus2/util/FileTempFileContainer.hpp:123:26: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘virtual std::ostream& libmaus2::util::FileTempFileContainer::getOutputTempFile(uint64_t)’ at ./libmaus2/util/FileTempFileContainer.hpp:93:27, inlined from ‘void testTempFileContainer()’ at test/testDivSufSort.cpp:164:24: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘virtual std::ostream& libmaus2::util::FileTempFileContainer::getOutputTempFile(uint64_t)’ at ./libmaus2/util/FileTempFileContainer.hpp:93:27, inlined from ‘void testTempFileContainer()’ at test/testDivSufSort.cpp:166:24: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr >; _Compare = std::less; _Alloc = std::allocator > > >]’, inlined from ‘virtual std::istream& libmaus2::util::MemTempFileContainer::openInputTempFile(uint64_t)’ at ./libmaus2/util/MemTempFileContainer.hpp:68:18: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree > >, std::_Select1st > > >, std::less, std::allocator > > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr >; _Compare = std::less; _Alloc = std::allocator > > >]’, inlined from ‘virtual std::istream& libmaus2::util::MemTempFileContainer::openInputTempFile(uint64_t)’ at ./libmaus2/util/MemTempFileContainer.hpp:70:18: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree > >, std::_Select1st > > >, std::less, std::allocator > > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr >; _Compare = std::less; _Alloc = std::allocator > > >]’, inlined from ‘virtual std::istream& libmaus2::util::MemTempFileContainer::openInputTempFile(uint64_t)’ at ./libmaus2/util/MemTempFileContainer.hpp:72:26: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree > >, std::_Select1st > > >, std::less, std::allocator > > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr >; _Compare = std::less; _Alloc = std::allocator > > >]’, inlined from ‘virtual std::ostream& libmaus2::util::MemTempFileContainer::openOutputTempFile(uint64_t)’ at ./libmaus2/util/MemTempFileContainer.hpp:46:18: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree > >, std::_Select1st > > >, std::less, std::allocator > > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr >; _Compare = std::less; _Alloc = std::allocator > > >]’, inlined from ‘virtual std::ostream& libmaus2::util::MemTempFileContainer::openOutputTempFile(uint64_t)’ at ./libmaus2/util/MemTempFileContainer.hpp:47:27: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree > >, std::_Select1st > > >, std::less, std::allocator > > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr >; _Compare = std::less; _Alloc = std::allocator > > >]’, inlined from ‘virtual std::ostream& libmaus2::util::MemTempFileContainer::getOutputTempFile(uint64_t)’ at ./libmaus2/util/MemTempFileContainer.hpp:52:27, inlined from ‘_ZN8libmaus23lcp11SuccinctLCPINS_2lf2LFENS_2fm15SimpleSampledSAIS3_EENS4_10SampledISAIS3_EEE16writeSuccinctLCPIS3_S8_NS_9autoarray9AutoArrayIxLNSB_10alloc_typeE0ENSB_10ArrayEraseIxEEEEEEvRT_RT0_RT1_RSoRNS_4util17TempFileContainerEyPSo._omp_fn.0’ at ./libmaus2/lcp/SuccinctLCP.hpp:207:58: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree > >, std::_Select1st > > >, std::less, std::allocator > > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testDivSufSort test/testDivSufSort-testDivSufSort.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testDivSufSort test/testDivSufSort-testDivSufSort.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testDNABitWords-testDNABitWords.o `test -f 'test/testDNABitWords.cpp' || echo './'`test/testDNABitWords.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testDNABitWords test/testDNABitWords-testDNABitWords.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testDNABitWords test/testDNABitWords-testDNABitWords.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testFastRead-testFastRead.o `test -f 'test/testFastRead.cpp' || echo './'`test/testFastRead.cpp In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/util/IntervalTree.hpp:25, from ./libmaus2/fastx/FastInterval.hpp:25, from ./libmaus2/fastx/FastAReader.hpp:31, from test/testFastRead.cpp:23: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testFastRead test/testFastRead-testFastRead.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testFastRead test/testFastRead-testFastRead.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testHuffman-testHuffman.o `test -f 'test/testHuffman.cpp' || echo './'`test/testHuffman.cpp In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/huffman/HuffmanTree.hpp:25, from test/testHuffman.cpp:27: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/huffman/huffman.hpp:183, from test/testHuffman.cpp:23: ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 2]’: ./libmaus2/huffman/HuffmanSorting.hpp:860:55: required from here 860 | huffman::EncodeTable enctable ( root ); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:188: ./libmaus2/huffman/HuffmanSorting.hpp: In instantiation of ‘static void libmaus2::huffman::HuffmanSorting::uncompressHuffmanCoded(uint64_t*, uint64_t, uint64_t, uint64_t, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::HuffmanTreeNode*, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::EncodeTable&) [with unsigned int lookupwords = 2; uint64_t = long long unsigned int]’: ./libmaus2/huffman/HuffmanSorting.hpp:1091:27: required from here 1091 | uncompressHuffmanCoded(acode.get(), 0 /* bit offset */, lowhalf /* syms */, firsthighsym, enctable,dectable,root.get(),dectable0,dectable1,enctable0,enctable1); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/huffman/HuffmanSorting.hpp:534:42: warning: variable ‘alldecoffset’ set but not used [-Wunused-but-set-variable=] 534 | uint64_t alldecoffset = highdecoffset; | ^~~~~~~~~~~~ ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 1]’: ./libmaus2/wavelet/HuffmanWaveletTree.hpp:406:49: required from here 406 | : n(rn), aroot(raroot), root(aroot.get()), enctable(root), acode(racode), code(acode.get()), | ^~~~~~~~~~~~~~ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/16/map:64, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:51, from ./libmaus2/lz/StreamWrapperBuffer.hpp:23, from ./libmaus2/lz/StreamWrapper.hpp:22, from ./libmaus2/aio/PosixFdInput.hpp:26, from ./libmaus2/aio/PosixFdInputWrapper.hpp:22, from ./libmaus2/aio/PosixFdInputStream.hpp:22, from ./libmaus2/aio/PosixFdInputStreamFactory.hpp:23, from ./libmaus2/aio/InputStreamFactoryContainer.hpp:23, from ./libmaus2/huffman/IndexLoaderBase.hpp:24, from test/testHuffman.cpp:20: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h:3250:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 3250 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_uninitialized.h:63, from /usr/arm-linux-gnueabihf/include/c++/16/memory:71, from ./libmaus2/exception/LibMausException.hpp:23, from ./libmaus2/huffman/IndexLoaderBase.hpp:23: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algobase.h: In function ‘constexpr void std::iter_swap(_ForwardIterator1, _ForwardIterator2) [with _ForwardIterator1 = __gnu_cxx::__normal_iterator*, vector > >; _ForwardIterator2 = __gnu_cxx::__normal_iterator*, vector > >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algobase.h:154:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 154 | iter_swap(_ForwardIterator1 __a, _ForwardIterator2 __b) | ^~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algobase.h:154:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/16/algorithm:63, from ./libmaus2/autoarray/AutoArray.hpp:35: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h: In function ‘constexpr void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Distance = int; _Tp = pair; _Compare = less]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:229:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 229 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h: In function ‘constexpr void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Size = int; _Compare = less]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1884:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1884 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1884:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 In function ‘constexpr void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = less]’, inlined from ‘constexpr _RandomAccessIterator std::__unguarded_partition_pivot(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = less]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1863:34, inlined from ‘constexpr void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Size = int; _Compare = less]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1897:38: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:94:27: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 94 | std::iter_swap(__result, __b); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:96:27: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 96 | std::iter_swap(__result, __c); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:98:27: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 98 | std::iter_swap(__result, __a); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h: In function ‘constexpr void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Size = int; _Compare = less]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1898:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1898 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/huffman/HuffmanTree.hpp: In constructor ‘libmaus2::huffman::HuffmanTree::HuffmanTree(iterator, uint64_t, bool, bool, bool) [with iterator = std::_Rb_tree_iterator >]’: ./libmaus2/huffman/HuffmanTree.hpp:643:25: note: parameter passing for argument of type ‘std::_Rb_tree_iterator >’ changed in GCC 7.1 643 | HuffmanTree(iterator F, uint64_t const s, bool const sortbydepth = false, bool const rsetcode = false, bool const rdfsorder = false) | ^~~~~~~~~~~ test/testHuffman.cpp: In function ‘void testHuffmanTree()’: test/testHuffman.cpp:585:70: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::iterator’ changed in GCC 7.1 585 | libmaus2::huffman::HuffmanTree H(M.begin(),M.size(),true,true); | ^ test/testHuffman.cpp:601:155: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::iterator’ changed in GCC 7.1 601 | libmaus2::huffman::HuffmanTree H3(M.begin(),M.size(),true /* sort leafs by depth */,true /* assign codes */,true /* order by inner nodes by dfs */); | ^ In function ‘constexpr void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = less]’, inlined from ‘constexpr void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator*, vector > >]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:4817:18, inlined from ‘void testRangeQuantile()’ at test/testHuffman.cpp:116:15: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1913:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1913 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1914 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1915 | __comp); | ~~~~~~~ In function ‘constexpr void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = less]’, inlined from ‘constexpr void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator*, vector > >]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:4817:18, inlined from ‘void testRangeQuantile()’ at test/testHuffman.cpp:205:15: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1913:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1913 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1914 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1915 | __comp); | ~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/16/map:65: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = int; _Tp = long long unsigned int; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘static void libmaus2::wavelet::HuffmanWaveletTree::testTree(const std::string&)’ at ./libmaus2/wavelet/HuffmanWaveletTree.hpp:1020:18: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:559:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 559 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = int; _Tp = long long unsigned int; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘static void libmaus2::wavelet::HuffmanWaveletTree::testTree(const std::string&)’ at ./libmaus2/wavelet/HuffmanWaveletTree.hpp:1024:16: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:559:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 559 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testHuffman test/testHuffman-testHuffman.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testHuffman test/testHuffman-testHuffman.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testIsa-testIsa.o `test -f 'test/testIsa.cpp' || echo './'`test/testIsa.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testIsa test/testIsa-testIsa.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testIsa test/testIsa-testIsa.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testkmp-testkmp.o `test -f 'test/testkmp.cpp' || echo './'`test/testkmp.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/16/map:64, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:51, from ./libmaus2/util/BorderArray.hpp:22, from test/testkmp.cpp:21: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h: In function ‘std::pair::rebind<_Val>::other>::pointer>::_Base_ptr, typename std::__rb_tree::_Node_traits<_Val, typename __gnu_cxx::__alloc_traits::rebind<_Val>::other>::pointer>::_Base_ptr> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(const_iterator, const key_type&) [with _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h:2952:5: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 2952 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h:3250:7: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 3250 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h:3250:7: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/16/map:65: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = long long unsigned int; _Tp = std::__cxx11::basic_string; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘static bool libmaus2::util::SuccinctBorderArray::checkFibonacci(uint64_t)’ at ./libmaus2/util/SuccinctBorderArray.hpp:207:8: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:559:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 559 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = long long unsigned int; _Tp = std::__cxx11::basic_string; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘static bool libmaus2::util::SuccinctBorderArray::checkFibonacci(uint64_t)’ at ./libmaus2/util/SuccinctBorderArray.hpp:208:8: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:559:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 559 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = long long unsigned int; _Tp = std::__cxx11::basic_string; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘static bool libmaus2::util::SuccinctBorderArray::checkFibonacci(uint64_t)’ at ./libmaus2/util/SuccinctBorderArray.hpp:213:19: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:559:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 559 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = long long unsigned int; _Tp = std::__cxx11::basic_string; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘static bool libmaus2::util::SuccinctBorderArray::checkFibonacci(uint64_t)’ at ./libmaus2/util/SuccinctBorderArray.hpp:213:26: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:559:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 559 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::__cxx11::basic_string; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘static bool libmaus2::util::SuccinctBorderArray::checkFibonacci(uint64_t)’ at ./libmaus2/util/SuccinctBorderArray.hpp:213:10: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::__cxx11::basic_string; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘static bool libmaus2::util::SuccinctBorderArray::checkFibonacci(uint64_t)’ at ./libmaus2/util/SuccinctBorderArray.hpp:215:26: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = long long unsigned int; _Tp = std::__cxx11::basic_string; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘static bool libmaus2::util::BorderArray::checkFibonacci(uint64_t) [with value_type = unsigned int]’ at ./libmaus2/util/BorderArray.hpp:128:12: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:559:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 559 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = long long unsigned int; _Tp = std::__cxx11::basic_string; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘static bool libmaus2::util::BorderArray::checkFibonacci(uint64_t) [with value_type = unsigned int]’ at ./libmaus2/util/BorderArray.hpp:129:12: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:559:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 559 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = long long unsigned int; _Tp = std::__cxx11::basic_string; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘static bool libmaus2::util::BorderArray::checkFibonacci(uint64_t) [with value_type = unsigned int]’ at ./libmaus2/util/BorderArray.hpp:134:20: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:559:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 559 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = long long unsigned int; _Tp = std::__cxx11::basic_string; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘static bool libmaus2::util::BorderArray::checkFibonacci(uint64_t) [with value_type = unsigned int]’ at ./libmaus2/util/BorderArray.hpp:134:20: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:559:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 559 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::__cxx11::basic_string; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘static bool libmaus2::util::BorderArray::checkFibonacci(uint64_t) [with value_type = unsigned int]’ at ./libmaus2/util/BorderArray.hpp:134:26: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::__cxx11::basic_string; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘static bool libmaus2::util::BorderArray::checkFibonacci(uint64_t) [with value_type = unsigned int]’ at ./libmaus2/util/BorderArray.hpp:136:22: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testkmp test/testkmp-testkmp.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testkmp test/testkmp-testkmp.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testlz-testlz.o `test -f 'test/testlz.cpp' || echo './'`test/testlz.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/16/algorithm:63, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/lz/GzipOutputStreamBuffer.hpp:24, from ./libmaus2/lz/GzipOutputStream.hpp:22, from test/testlz.cpp:20: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h: In function ‘constexpr void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = less]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1884:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1884 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1884:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1898:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1898 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘constexpr void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = less]’, inlined from ‘constexpr void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:4817:18, inlined from ‘void libmaus2::trie::LinearHashTrie<_char_type, _id_type>::fillDepthParent() [with _char_type = char; _id_type = unsigned int]’ at ./libmaus2/trie/TrieState.hpp:261:14: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1913:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1913 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1914 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1915 | __comp); | ~~~~~~~ In file included from ./libmaus2/bambam/BamHeader.hpp:36, from test/testlz.cpp:96: ./libmaus2/hashing/ConstantStringHash.hpp: In constructor ‘libmaus2::hashing::ConstantStringHash::ConstantStringHash(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]’: ./libmaus2/hashing/ConstantStringHash.hpp:96:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 96 | ConstantStringHash(iterator ita, iterator ite, uint64_t const maxn = 64*1024) | ^~~~~~~~~~~~~~~~~~ ./libmaus2/hashing/ConstantStringHash.hpp:96:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In static member function ‘static libmaus2::hashing::ConstantStringHash::shared_ptr_type libmaus2::hashing::ConstantStringHash::constructShared(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]’, inlined from ‘void libmaus2::bambam::BamHeader::initSetup()’ at ./libmaus2/bambam/BamHeader.hpp:965:67: ./libmaus2/hashing/ConstantStringHash.hpp:86:59: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 86 | shared_ptr_type s(new this_type(ita,ite,maxn)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testlz test/testlz-testlz.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testlz test/testlz-testlz.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testRank-testRank.o `test -f 'test/testRank.cpp' || echo './'`test/testRank.cpp In file included from test/testRank.cpp:35: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from /usr/arm-linux-gnueabihf/include/c++/16/map:64, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:51, from ./libmaus2/rank/ChooseCache.hpp:23, from ./libmaus2/rank/CodeBase.hpp:23, from ./libmaus2/rank/EncodeCache.hpp:23, from ./libmaus2/rank/ERankBase.hpp:24, from test/testRank.cpp:20: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h: In function ‘std::pair::rebind<_Val>::other>::pointer>::_Base_ptr, typename std::__rb_tree::_Node_traits<_Val, typename __gnu_cxx::__alloc_traits::rebind<_Val>::other>::pointer>::_Base_ptr> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(const_iterator, const key_type&) [with _Key = unsigned int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h:2952:5: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 2952 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h: In function ‘std::pair::rebind<_Val>::other>::pointer>::_Base_ptr, typename std::__rb_tree::_Node_traits<_Val, typename __gnu_cxx::__alloc_traits::rebind<_Val>::other>::pointer>::_Base_ptr> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(const_iterator, const key_type&) [with _Key = char; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h:2952:5: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = char; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h:3250:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 3250 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = char; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h:3250:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/16/map:65: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = char; _Tp = long long unsigned int; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘void testFastRank()’ at test/testRank.cpp:1805:10: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = char; _Tp = long long unsigned int; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘void testFastRank()’ at test/testRank.cpp:1808:31: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:559:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 559 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = char; _Tp = long long unsigned int; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘void testFastRank()’ at test/testRank.cpp:1824:10: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = char; _Tp = long long unsigned int; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘void testFastRank()’ at test/testRank.cpp:1827:31: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:559:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 559 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testRank test/testRank-testRank.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testRank test/testRank-testRank.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testToWaveletTreeBits-testToWaveletTreeBits.o `test -f 'test/testToWaveletTreeBits.cpp' || echo './'`test/testToWaveletTreeBits.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testToWaveletTreeBits test/testToWaveletTreeBits-testToWaveletTreeBits.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testToWaveletTreeBits test/testToWaveletTreeBits-testToWaveletTreeBits.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testWaveletExternal-testWaveletExternal.o `test -f 'test/testWaveletExternal.cpp' || echo './'`test/testWaveletExternal.cpp In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/huffman/HuffmanTree.hpp:25, from ./libmaus2/wavelet/ImpExternalWaveletGeneratorCompactHuffman.hpp:33, from test/testWaveletExternal.cpp:28: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/wavelet/ExternalWaveletGenerator.hpp:34, from test/testWaveletExternal.cpp:20: ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 1]’: ./libmaus2/wavelet/ImpHuffmanWaveletTree.hpp:302:54: required from here 302 | : n(rn), sroot(rsroot), dicts(numnodes), root(0), enctable(sroot.get()), maxdepth(0), nodepos(rnodepos) | ^~~~~~~~~~~~~~~~~~~~~ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 2]’: ./libmaus2/huffman/HuffmanSorting.hpp:860:55: required from here 860 | huffman::EncodeTable enctable ( root ); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:188, from test/testWaveletExternal.cpp:101: ./libmaus2/huffman/HuffmanSorting.hpp: In instantiation of ‘static void libmaus2::huffman::HuffmanSorting::uncompressHuffmanCoded(uint64_t*, uint64_t, uint64_t, uint64_t, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::HuffmanTreeNode*, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::EncodeTable&) [with unsigned int lookupwords = 2; uint64_t = long long unsigned int]’: ./libmaus2/huffman/HuffmanSorting.hpp:1091:27: required from here 1091 | uncompressHuffmanCoded(acode.get(), 0 /* bit offset */, lowhalf /* syms */, firsthighsym, enctable,dectable,root.get(),dectable0,dectable1,enctable0,enctable1); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/huffman/HuffmanSorting.hpp:534:42: warning: variable ‘alldecoffset’ set but not used [-Wunused-but-set-variable=] 534 | uint64_t alldecoffset = highdecoffset; | ^~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/16/map:64, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/bitio/BitVectorConcat.hpp:23, from ./libmaus2/wavelet/ExternalWaveletGenerator.hpp:23: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h: In function ‘std::pair::rebind<_Val>::other>::pointer>::_Base_ptr, typename std::__rb_tree::_Node_traits<_Val, typename __gnu_cxx::__alloc_traits::rebind<_Val>::other>::pointer>::_Base_ptr> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(const_iterator, const key_type&) [with _Key = long long unsigned int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h:2952:5: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 2952 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h: In function ‘std::pair::rebind<_Val>::other>::pointer>::_Base_ptr, typename std::__rb_tree::_Node_traits<_Val, typename __gnu_cxx::__alloc_traits::rebind<_Val>::other>::pointer>::_Base_ptr> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(const_iterator, const key_type&) [with _Key = long long int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h:2952:5: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = const libmaus2::huffman::HuffmanTreeInnerNode*; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h:3250:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 3250 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h:3250:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h:3250:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h:3250:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h:3250:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair > >; _KeyOfValue = std::_Select1st > > >; _Compare = std::less; _Alloc = std::allocator > > >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h:3250:7: note: parameter passing for argument of type ‘std::_Rb_tree > >, std::_Select1st > > >, std::less, std::allocator > > > >::const_iterator’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair > >; _KeyOfValue = std::_Select1st > > >; _Compare = std::less; _Alloc = std::allocator > > >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h:3250:7: note: parameter passing for argument of type ‘std::_Rb_tree > >, std::_Select1st > > >, std::less, std::allocator > > > >::const_iterator’ changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/16/map:65: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr >; _Compare = std::less; _Alloc = std::allocator > > >]’, inlined from ‘virtual std::ostream& libmaus2::util::MemTempFileContainer::getOutputTempFile(uint64_t)’ at ./libmaus2/util/MemTempFileContainer.hpp:52:27: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree > >, std::_Select1st > > >, std::less, std::allocator > > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr >; _Compare = std::less; _Alloc = std::allocator > > >]’, inlined from ‘virtual std::istream& libmaus2::util::MemTempFileContainer::openInputTempFile(uint64_t)’ at ./libmaus2/util/MemTempFileContainer.hpp:68:18: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree > >, std::_Select1st > > >, std::less, std::allocator > > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr >; _Compare = std::less; _Alloc = std::allocator > > >]’, inlined from ‘virtual std::istream& libmaus2::util::MemTempFileContainer::openInputTempFile(uint64_t)’ at ./libmaus2/util/MemTempFileContainer.hpp:70:18: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree > >, std::_Select1st > > >, std::less, std::allocator > > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr >; _Compare = std::less; _Alloc = std::allocator > > >]’, inlined from ‘virtual std::istream& libmaus2::util::MemTempFileContainer::openInputTempFile(uint64_t)’ at ./libmaus2/util/MemTempFileContainer.hpp:72:26: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree > >, std::_Select1st > > >, std::less, std::allocator > > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr >; _Compare = std::less; _Alloc = std::allocator > > >]’, inlined from ‘virtual std::ostream& libmaus2::util::MemTempFileContainer::openOutputTempFile(uint64_t)’ at ./libmaus2/util/MemTempFileContainer.hpp:46:18: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree > >, std::_Select1st > > >, std::less, std::allocator > > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr >; _Compare = std::less; _Alloc = std::allocator > > >]’, inlined from ‘virtual std::ostream& libmaus2::util::MemTempFileContainer::openOutputTempFile(uint64_t)’ at ./libmaus2/util/MemTempFileContainer.hpp:47:27: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree > >, std::_Select1st > > >, std::less, std::allocator > > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = long long int; _Tp = long long unsigned int; _Compare = std::less; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:559:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 559 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = long long int; _Tp = long long unsigned int; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘std::map libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate<_rank_type>::enumerateSymbolsInRange(uint64_t, uint64_t) const [with _rank_type = libmaus2::rank::ImpCacheLineRank]’ at ./libmaus2/wavelet/ImpCompactHuffmanWaveletTree.hpp:677:9: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:559:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 559 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = const libmaus2::huffman::HuffmanTreeInnerNode*; _Tp = long long unsigned int; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘libmaus2::wavelet::ImpExternalWaveletGeneratorHuffmanParallel::ImpExternalWaveletGeneratorHuffmanParallel(const libmaus2::huffman::HuffmanTreeNode*, libmaus2::util::TempFileNameGenerator&, uint64_t)’ at ./libmaus2/wavelet/ImpExternalWaveletGeneratorHuffmanParallel.hpp:177:23: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = const libmaus2::huffman::HuffmanTreeInnerNode*; _Tp = long long unsigned int; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘void libmaus2::wavelet::ImpHuffmanWaveletTree::init()’ at ./libmaus2/wavelet/ImpHuffmanWaveletTree.hpp:168:23: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = const libmaus2::huffman::HuffmanTreeInnerNode*; _Tp = long long unsigned int; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void libmaus2::huffman::HuffmanTreeInnerNode::toDot(std::ostream&) const’ at ./libmaus2/huffman/HuffmanTreeInnerNode.hpp:193:71: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ ./libmaus2/huffman/HuffmanTree.hpp: In constructor ‘libmaus2::huffman::HuffmanTree::HuffmanTree(iterator, uint64_t, bool, bool, bool) [with iterator = std::_Rb_tree_iterator >]’: ./libmaus2/huffman/HuffmanTree.hpp:643:25: note: parameter passing for argument of type ‘std::_Rb_tree_iterator >’ changed in GCC 7.1 643 | HuffmanTree(iterator F, uint64_t const s, bool const sortbydepth = false, bool const rsetcode = false, bool const rdfsorder = false) | ^~~~~~~~~~~ test/testWaveletExternal.cpp: In function ‘void testCompactHuffman()’: test/testWaveletExternal.cpp:307:71: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::iterator’ changed in GCC 7.1 307 | libmaus2::huffman::HuffmanTree H(F.begin(),F.size(),false,true); | ^ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = long long unsigned int; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘void testCompactHuffman()’ at test/testWaveletExternal.cpp:341:3: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = long long unsigned int; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘void testCompactHuffman()’ at test/testWaveletExternal.cpp:343:3: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = long long unsigned int; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘void testCompactHuffman()’ at test/testWaveletExternal.cpp:344:9: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = long long unsigned int; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘void testCompactHuffman()’ at test/testWaveletExternal.cpp:345:3: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = long long int; _Tp = long long unsigned int; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘std::map libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate<_rank_type>::enumerateSymbolsInRangeSlow(uint64_t, uint64_t) const [with _rank_type = libmaus2::rank::ImpCacheLineRank]’ at ./libmaus2/wavelet/ImpCompactHuffmanWaveletTree.hpp:515:8, inlined from ‘void testCompactHuffman()’ at test/testWaveletExternal.cpp:352:4: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:559:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 559 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = long long int; _Tp = long long unsigned int; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘void testCompactHuffmanPar()’ at test/testWaveletExternal.cpp:370:13: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:559:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 559 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 | std::tuple<>()); | ~~~~~~~~~~~~~~~ test/testWaveletExternal.cpp: In function ‘void testCompactHuffmanPar()’: test/testWaveletExternal.cpp:372:71: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::iterator’ changed in GCC 7.1 372 | libmaus2::huffman::HuffmanTree H(F.begin(),F.size(),false,true); | ^ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = long long unsigned int; _Tp = long long unsigned int; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘void testCompactHuffmanPar()’ at test/testWaveletExternal.cpp:433:3: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:559:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 559 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = long long unsigned int; _Tp = long long unsigned int; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘void testCompactHuffmanPar()’ at test/testWaveletExternal.cpp:435:3: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:559:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 559 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = long long unsigned int; _Tp = long long unsigned int; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘void testCompactHuffmanPar()’ at test/testWaveletExternal.cpp:436:9: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:559:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 559 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = long long unsigned int; _Tp = long long unsigned int; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘void testCompactHuffmanPar()’ at test/testWaveletExternal.cpp:437:3: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:559:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 559 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = long long int; _Tp = long long unsigned int; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘static std::shared_ptr libmaus2::huffman::HuffmanBase::createTree(iterator, iterator) [with iterator = __gnu_cxx::__normal_iterator >]’ at ./libmaus2/huffman/HuffmanBase.hpp:47:11, inlined from ‘void testHuffmanWavelet()’ at test/testWaveletExternal.cpp:122:134: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:559:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 559 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long int; _Tp = long long unsigned int; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘void testHuffmanWavelet()’ at test/testWaveletExternal.cpp:223:4: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = long long int; _Tp = long long unsigned int; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘void testHuffmanWavelet()’ at test/testWaveletExternal.cpp:228:3: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:559:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 559 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = long long int; _Tp = long long unsigned int; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘void testHuffmanWavelet()’ at test/testWaveletExternal.cpp:230:20: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:559:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 559 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long int; _Tp = long long unsigned int; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘void testHuffmanWavelet()’ at test/testWaveletExternal.cpp:241:4: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = long long int; _Tp = long long unsigned int; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘void testHuffmanWavelet()’ at test/testWaveletExternal.cpp:250:3: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:559:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 559 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = long long int; _Tp = long long unsigned int; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘static std::shared_ptr libmaus2::huffman::HuffmanBase::createTree(iterator, iterator) [with iterator = __gnu_cxx::__normal_iterator >]’ at ./libmaus2/huffman/HuffmanBase.hpp:47:11, inlined from ‘void testHuffmanWaveletSer()’ at test/testWaveletExternal.cpp:265:134: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:559:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 559 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testWaveletExternal test/testWaveletExternal-testWaveletExternal.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testWaveletExternal test/testWaveletExternal-testWaveletExternal.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testTrie-testTrie.o `test -f 'test/testTrie.cpp' || echo './'`test/testTrie.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/16/map:64, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:51, from ./libmaus2/bitio/BitIOOutput.hpp:27, from ./libmaus2/uint/uint.hpp:32, from ./libmaus2/util/SimpleHashMapKeyPrint.hpp:24, from ./libmaus2/util/SimpleHashMap.hpp:24, from ./libmaus2/trie/TrieState.hpp:22, from test/testTrie.cpp:20: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple* const&>, std::tuple<>}; _Key = const libmaus2::trie::TrieState*; _Val = std::pair* const, long long unsigned int>; _KeyOfValue = std::_Select1st* const, long long unsigned int> >; _Compare = std::less*>; _Alloc = std::allocator* const, long long unsigned int> >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h:3250:7: note: parameter passing for argument of type ‘std::_Rb_tree*, std::pair* const, long long unsigned int>, std::_Select1st* const, long long unsigned int> >, std::less*>, std::allocator* const, long long unsigned int> > >::const_iterator’ changed in GCC 7.1 3250 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/16/algorithm:63, from ./libmaus2/autoarray/AutoArray.hpp:35: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h: In function ‘constexpr void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = less]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1884:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1884 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1884:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1898:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1898 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘constexpr void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = less]’, inlined from ‘constexpr void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:4817:18, inlined from ‘void libmaus2::trie::LinearHashTrie<_char_type, _id_type>::fillDepthParent() [with _char_type = char; _id_type = unsigned int]’ at ./libmaus2/trie/TrieState.hpp:261:14: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1913:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1913 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1914 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1915 | __comp); | ~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/16/map:65: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = const libmaus2::trie::TrieState*; _Tp = long long unsigned int; _Compare = std::less*>; _Alloc = std::allocator* const, long long unsigned int> >]’, inlined from ‘std::vector > libmaus2::trie::Trie<_char_type>::toLinearStateVector() const [with _char_type = char]’ at ./libmaus2/trie/TrieState.hpp:671:8: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree*, std::pair* const, long long unsigned int>, std::_Select1st* const, long long unsigned int> >, std::less*>, std::allocator* const, long long unsigned int> > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = const libmaus2::trie::TrieState*; _Tp = long long unsigned int; _Compare = std::less*>; _Alloc = std::allocator* const, long long unsigned int> >]’, inlined from ‘typename libmaus2::trie::LinearHashTrie<_char_type, id_type>::unique_ptr_type libmaus2::trie::Trie<_char_type>::toLinearHashTrie() const [with id_type = unsigned int; _char_type = char]’ at ./libmaus2/trie/TrieState.hpp:726:8: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree*, std::pair* const, long long unsigned int>, std::_Select1st* const, long long unsigned int> >, std::less*>, std::allocator* const, long long unsigned int> > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testTrie test/testTrie-testTrie.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testTrie test/testTrie-testTrie.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testbandedlcs-testbandedlcs.o `test -f 'test/testbandedlcs.cpp' || echo './'`test/testbandedlcs.cpp In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/util/IntervalTree.hpp:25, from ./libmaus2/fastx/FastInterval.hpp:25, from ./libmaus2/fastx/FastAReader.hpp:31, from test/testbandedlcs.cpp:23: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testbandedlcs test/testbandedlcs-testbandedlcs.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testbandedlcs test/testbandedlcs-testbandedlcs.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testbamwriter-testbamwriter.o `test -f 'test/testbamwriter.cpp' || echo './'`test/testbamwriter.cpp In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/bambam/BamAuxFilterVector.hpp:22, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:27, from ./libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from ./libmaus2/bambam/BamWriter.hpp:22, from test/testbamwriter.cpp:19: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/bambam/CigarStringParser.hpp:25, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ In file included from ./libmaus2/bambam/BamAlignmentDecoder.hpp:24, from ./libmaus2/bambam/BamDecoder.hpp:22, from test/testbamwriter.cpp:22: ./libmaus2/bambam/BamHeaderLowMem.hpp: In member function ‘void libmaus2::bambam::BamHeaderLowMem::setupFromText()’: ./libmaus2/bambam/BamHeaderLowMem.hpp:366:58: warning: variable ‘ln’ set but not used [-Wunused-but-set-variable=] 366 | uint64_t ln = 0; | ^~ In file included from /usr/arm-linux-gnueabihf/include/c++/16/algorithm:63, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h: In function ‘constexpr void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = less]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1884:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1884 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1884:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1898:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1898 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘constexpr void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = less]’, inlined from ‘constexpr void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:4817:18, inlined from ‘void libmaus2::trie::LinearHashTrie<_char_type, _id_type>::fillDepthParent() [with _char_type = char; _id_type = unsigned int]’ at ./libmaus2/trie/TrieState.hpp:261:14: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1913:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1913 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1914 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1915 | __comp); | ~~~~~~~ In file included from ./libmaus2/bambam/BamHeader.hpp:36, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:30: ./libmaus2/hashing/ConstantStringHash.hpp: In constructor ‘libmaus2::hashing::ConstantStringHash::ConstantStringHash(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]’: ./libmaus2/hashing/ConstantStringHash.hpp:96:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 96 | ConstantStringHash(iterator ita, iterator ite, uint64_t const maxn = 64*1024) | ^~~~~~~~~~~~~~~~~~ ./libmaus2/hashing/ConstantStringHash.hpp:96:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In static member function ‘static libmaus2::hashing::ConstantStringHash::shared_ptr_type libmaus2::hashing::ConstantStringHash::constructShared(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]’, inlined from ‘void libmaus2::bambam::BamHeader::initSetup()’ at ./libmaus2/bambam/BamHeader.hpp:965:67: ./libmaus2/hashing/ConstantStringHash.hpp:86:59: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 86 | shared_ptr_type s(new this_type(ita,ite,maxn)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testbamwriter test/testbamwriter-testbamwriter.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testbamwriter test/testbamwriter-testbamwriter.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testarraydecode-testarraydecode.o `test -f 'test/testarraydecode.cpp' || echo './'`test/testarraydecode.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testarraydecode test/testarraydecode-testarraydecode.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testarraydecode test/testarraydecode-testarraydecode.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testsnappy-testsnappy.o `test -f 'test/testsnappy.cpp' || echo './'`test/testsnappy.cpp In file included from test/testsnappy.cpp:25: ./libmaus2/lz/SnappyInputStreamArray.hpp: In constructor ‘libmaus2::lz::SnappyInputStreamArray::SnappyInputStreamArray(std::istream&, iterator, iterator) [with iterator = __gnu_cxx::__normal_iterator >]’: ./libmaus2/lz/SnappyInputStreamArray.hpp:33:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 33 | SnappyInputStreamArray(std::istream & in, iterator offa, iterator offe) | ^~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/lz/SnappyInputStreamArray.hpp:33:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 test/testsnappy.cpp: In function ‘void testSnappyStreamDual()’: test/testsnappy.cpp:109:87: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 109 | ::libmaus2::lz::SnappyInputStreamArray SISA(istr,offsets.begin(),offsets.end()); | ^ /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testsnappy test/testsnappy-testsnappy.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testsnappy test/testsnappy-testsnappy.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testsnappyconcat-testsnappyconcat.o `test -f 'test/testsnappyconcat.cpp' || echo './'`test/testsnappyconcat.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testsnappyconcat test/testsnappyconcat-testsnappyconcat.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testsnappyconcat test/testsnappyconcat-testsnappyconcat.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testgunzip-testgunzip.o `test -f 'test/testgunzip.cpp' || echo './'`test/testgunzip.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testgunzip test/testgunzip-testgunzip.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testgunzip test/testgunzip-testgunzip.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testhashcollisions-testhashcollisions.o `test -f 'test/testhashcollisions.cpp' || echo './'`test/testhashcollisions.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/16/algorithm:63, from test/testhashcollisions.cpp:23: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h: In function ‘constexpr void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = less]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1884:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1884 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1884:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1898:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1898 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘constexpr void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = less]’, inlined from ‘constexpr void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:4817:18, inlined from ‘void testHashCollisions()’ at test/testhashcollisions.cpp:45:12: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1913:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1913 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1914 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1915 | __comp); | ~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testhashcollisions test/testhashcollisions-testhashcollisions.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testhashcollisions test/testhashcollisions-testhashcollisions.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testsimplebloomcollisions-testsimplebloomcollisions.o `test -f 'test/testsimplebloomcollisions.cpp' || echo './'`test/testsimplebloomcollisions.cpp In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/util/SimpleBloomFilter.hpp:25, from test/testsimplebloomcollisions.cpp:20: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testsimplebloomcollisions test/testsimplebloomcollisions-testsimplebloomcollisions.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testsimplebloomcollisions test/testsimplebloomcollisions-testsimplebloomcollisions.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testsimplehash-testsimplehash.o `test -f 'test/testsimplehash.cpp' || echo './'`test/testsimplehash.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testsimplehash test/testsimplehash-testsimplehash.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testsimplehash test/testsimplehash-testsimplehash.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testsimplecountinghash-testsimplecountinghash.o `test -f 'test/testsimplecountinghash.cpp' || echo './'`test/testsimplecountinghash.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testsimplecountinghash test/testsimplecountinghash-testsimplecountinghash.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testsimplecountinghash test/testsimplecountinghash-testsimplecountinghash.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testcachealignedalloc-testcachealignedalloc.o `test -f 'test/testcachealignedalloc.cpp' || echo './'`test/testcachealignedalloc.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testcachealignedalloc test/testcachealignedalloc-testcachealignedalloc.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testcachealignedalloc test/testcachealignedalloc-testcachealignedalloc.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testsyncfastreaderbase-testsyncfastreaderbase.o `test -f 'test/testsyncfastreaderbase.cpp' || echo './'`test/testsyncfastreaderbase.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testsyncfastreaderbase test/testsyncfastreaderbase-testsyncfastreaderbase.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testsyncfastreaderbase test/testsyncfastreaderbase-testsyncfastreaderbase.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testdl-testdl.o `test -f 'test/testdl.cpp' || echo './'`test/testdl.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testdl test/testdl-testdl.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testdl test/testdl-testdl.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testdifenc-testdifenc.o `test -f 'test/testdifenc.cpp' || echo './'`test/testdifenc.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testdifenc test/testdifenc-testdifenc.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testdifenc test/testdifenc-testdifenc.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testbwtmergeinternal-testbwtmergeinternal.o `test -f 'test/testbwtmergeinternal.cpp' || echo './'`test/testbwtmergeinternal.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testbwtmergeinternal test/testbwtmergeinternal-testbwtmergeinternal.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testbwtmergeinternal test/testbwtmergeinternal-testbwtmergeinternal.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testfastarewrite-testfastarewrite.o `test -f 'test/testfastarewrite.cpp' || echo './'`test/testfastarewrite.cpp In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/util/IntervalTree.hpp:25, from ./libmaus2/fastx/FastInterval.hpp:25, from ./libmaus2/fastx/FastAReader.hpp:31, from test/testfastarewrite.cpp:6: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testfastarewrite test/testfastarewrite-testfastarewrite.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testfastarewrite test/testfastarewrite-testfastarewrite.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testfastarecode-testfastarecode.o `test -f 'test/testfastarecode.cpp' || echo './'`test/testfastarecode.cpp In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/util/IntervalTree.hpp:25, from ./libmaus2/fastx/FastInterval.hpp:25, from ./libmaus2/fastx/FastAReader.hpp:31, from test/testfastarecode.cpp:24: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testfastarecode test/testfastarecode-testfastarecode.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testfastarecode test/testfastarecode-testfastarecode.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testbamtofastq-testbamtofastq.o `test -f 'test/testbamtofastq.cpp' || echo './'`test/testbamtofastq.cpp In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/bambam/BamAuxFilterVector.hpp:22, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:27, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testbamtofastq.cpp:19: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/bambam/CigarStringParser.hpp:25, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ In file included from ./libmaus2/bambam/BamAlignmentDecoder.hpp:24, from ./libmaus2/bambam/BamDecoder.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:23: ./libmaus2/bambam/BamHeaderLowMem.hpp: In member function ‘void libmaus2::bambam::BamHeaderLowMem::setupFromText()’: ./libmaus2/bambam/BamHeaderLowMem.hpp:366:58: warning: variable ‘ln’ set but not used [-Wunused-but-set-variable=] 366 | uint64_t ln = 0; | ^~ In file included from /usr/arm-linux-gnueabihf/include/c++/16/algorithm:63, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h: In function ‘constexpr void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = less]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1884:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1884 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1884:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1898:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1898 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h: In function ‘constexpr void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = less]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1770:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1770 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1770:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/16/map:64, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:51: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h:3250:7: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 3250 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘constexpr void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = less]’, inlined from ‘constexpr void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:4817:18, inlined from ‘void libmaus2::trie::LinearHashTrie<_char_type, _id_type>::fillDepthParent() [with _char_type = char; _id_type = unsigned int]’ at ./libmaus2/trie/TrieState.hpp:261:14: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1913:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1913 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1914 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1915 | __comp); | ~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:61: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h: In function ‘constexpr void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = libmaus2::bambam::BamAlignmentHeapComparator]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:141:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 141 | __push_heap(_RandomAccessIterator __first, | ^~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h: In member function ‘std::pair::rebind<_Val>::other>::pointer>::_Base_ptr, typename std::__rb_tree::_Node_traits<_Val, typename __gnu_cxx::__alloc_traits::rebind<_Val>::other>::pointer>::_Base_ptr> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(const_iterator, const key_type&) [with _Key = std::__cxx11::basic_string; _Val = std::pair, long long unsigned int>; _KeyOfValue = std::_Select1st, long long unsigned int> >; _Compare = std::less >; _Alloc = std::allocator, long long unsigned int> >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h:2952:5: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, long long unsigned int>, std::_Select1st, long long unsigned int> >, std::less >, std::allocator, long long unsigned int> > >::const_iterator’ changed in GCC 7.1 2952 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::allocator >&>, std::tuple<>}; _Key = std::__cxx11::basic_string; _Val = std::pair, long long unsigned int>; _KeyOfValue = std::_Select1st, long long unsigned int> >; _Compare = std::less >; _Alloc = std::allocator, long long unsigned int> >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h:3250:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, long long unsigned int>, std::_Select1st, long long unsigned int> >, std::less >, std::allocator, long long unsigned int> > >::const_iterator’ changed in GCC 7.1 3250 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::allocator >&&>, std::tuple<>}; _Key = std::__cxx11::basic_string; _Val = std::pair, long long unsigned int>; _KeyOfValue = std::_Select1st, long long unsigned int> >; _Compare = std::less >; _Alloc = std::allocator, long long unsigned int> >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h:3250:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, long long unsigned int>, std::_Select1st, long long unsigned int> >, std::less >, std::allocator, long long unsigned int> > >::const_iterator’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h: In function ‘constexpr void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = libmaus2::bambam::BamAlignmentHeapComparator]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:229:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 229 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In file included from ./libmaus2/bambam/BamHeader.hpp:36, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:30: ./libmaus2/hashing/ConstantStringHash.hpp: In constructor ‘libmaus2::hashing::ConstantStringHash::ConstantStringHash(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]’: ./libmaus2/hashing/ConstantStringHash.hpp:96:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 96 | ConstantStringHash(iterator ita, iterator ite, uint64_t const maxn = 64*1024) | ^~~~~~~~~~~~~~~~~~ ./libmaus2/hashing/ConstantStringHash.hpp:96:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h: In function ‘constexpr void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = libmaus2::bambam::BamMergeCoordinateHeapComparator]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:229:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 229 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/16/string:55, from /usr/arm-linux-gnueabihf/include/c++/16/bits/locale_classes.h:43, from /usr/arm-linux-gnueabihf/include/c++/16/bits/ios_base.h:43, from /usr/arm-linux-gnueabihf/include/c++/16/ios:46, from /usr/arm-linux-gnueabihf/include/c++/16/bits/ostream.h:43, from /usr/arm-linux-gnueabihf/include/c++/16/ostream:42, from ./libmaus2/bambam/AlignmentValidity.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:23: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algobase.h: In function ‘constexpr void std::iter_swap(_ForwardIterator1, _ForwardIterator2) [with _ForwardIterator1 = __gnu_cxx::__normal_iterator*, vector > >; _ForwardIterator2 = __gnu_cxx::__normal_iterator*, vector > >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algobase.h:154:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 154 | iter_swap(_ForwardIterator1 __a, _ForwardIterator2 __b) | ^~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algobase.h:154:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h: In function ‘constexpr void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Distance = int; _Tp = pair; _Compare = libmaus2::bambam::ReadGroupVectorMerge::ReadGroupIndexComparator]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:229:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 229 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h: In function ‘constexpr void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Size = int; _Compare = libmaus2::bambam::ReadGroupVectorMerge::ReadGroupIndexComparator]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1884:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1884 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1884:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 In function ‘constexpr void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = libmaus2::bambam::ReadGroupVectorMerge::ReadGroupIndexComparator]’, inlined from ‘constexpr _RandomAccessIterator std::__unguarded_partition_pivot(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = libmaus2::bambam::ReadGroupVectorMerge::ReadGroupIndexComparator]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1863:34, inlined from ‘constexpr void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Size = int; _Compare = libmaus2::bambam::ReadGroupVectorMerge::ReadGroupIndexComparator]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1897:38: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:94:27: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 94 | std::iter_swap(__result, __b); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:96:27: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 96 | std::iter_swap(__result, __c); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:98:27: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 98 | std::iter_swap(__result, __a); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h: In function ‘constexpr void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Size = int; _Compare = libmaus2::bambam::ReadGroupVectorMerge::ReadGroupIndexComparator]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1898:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1898 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h: In function ‘constexpr void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = libmaus2::bambam::ReadGroupVectorMerge::ReadGroupIndexComparator]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1770:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1770 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1770:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 In function ‘constexpr void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = libmaus2::bambam::ReadGroupVectorMerge::ReadGroupIndexComparator]’, inlined from ‘constexpr void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator*, vector > >; _Compare = libmaus2::bambam::ReadGroupVectorMerge::ReadGroupIndexComparator]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:4849:18, inlined from ‘libmaus2::bambam::ReadGroupVectorMerge::ReadGroupVectorMerge(const std::vector*>&)’ at ./libmaus2/bambam/ReadGroup.hpp:177:14: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1913:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1913 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1914 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1915 | __comp); | ~~~~~~~ In function ‘constexpr void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = libmaus2::bambam::ReadGroupVectorMerge::ReadGroupIndexComparator]’, inlined from ‘constexpr void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = libmaus2::bambam::ReadGroupVectorMerge::ReadGroupIndexComparator]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1916:31, inlined from ‘constexpr void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator*, vector > >; _Compare = libmaus2::bambam::ReadGroupVectorMerge::ReadGroupIndexComparator]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:4849:18, inlined from ‘libmaus2::bambam::ReadGroupVectorMerge::ReadGroupVectorMerge(const std::vector*>&)’ at ./libmaus2/bambam/ReadGroup.hpp:177:14: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1826:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1826 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h: In function ‘constexpr std::pair std::__equal_range(_ForwardIterator, _ForwardIterator, const _Tp&, _Compare) [with _ForwardIterator = __gnu_cxx::__normal_iterator >; _Tp = libmaus2::bambam::Chromosome; _Compare = libmaus2::bambam::ChromosomeVectorMerge::ChromosomeIndexComparator]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:2076:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2076 | __equal_range(_ForwardIterator __first, _ForwardIterator __last, | ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:2076:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In function ‘constexpr std::pair std::equal_range(_FIter, _FIter, const _Tp&, _Compare) [with _FIter = __gnu_cxx::__normal_iterator >; _Tp = libmaus2::bambam::Chromosome; _Compare = libmaus2::bambam::ChromosomeVectorMerge::ChromosomeIndexComparator]’, inlined from ‘libmaus2::bambam::ChromosomeVectorMerge::ChromosomeVectorMerge(const std::vector*>&, bool)’ at ./libmaus2/bambam/ChromosomeVectorMerge.hpp:161:55: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:2180:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2180 | return std::__equal_range(__first, __last, __val, __comp); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘constexpr std::pair std::equal_range(_FIter, _FIter, const _Tp&, _Compare) [with _FIter = __gnu_cxx::__normal_iterator >; _Tp = libmaus2::bambam::Chromosome; _Compare = libmaus2::bambam::ChromosomeVectorMerge::ChromosomeIndexComparator]’, inlined from ‘libmaus2::bambam::ChromosomeVectorMerge::ChromosomeVectorMerge(const std::vector*>&, bool)’ at ./libmaus2/bambam/ChromosomeVectorMerge.hpp:165:55: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:2180:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2180 | return std::__equal_range(__first, __last, __val, __comp); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/16/map:65: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::set; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘libmaus2::bambam::ChromosomeVectorMerge::ChromosomeVectorMerge(const std::vector*>&, bool)’ at ./libmaus2/bambam/ChromosomeVectorMerge.hpp:169:22: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::set; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘libmaus2::bambam::ChromosomeVectorMerge::ChromosomeVectorMerge(const std::vector*>&, bool)’ at ./libmaus2/bambam/ChromosomeVectorMerge.hpp:170:23: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::set; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘libmaus2::bambam::ChromosomeVectorMerge::ChromosomeVectorMerge(const std::vector*>&, bool)’ at ./libmaus2/bambam/ChromosomeVectorMerge.hpp:204:19: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::set; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘libmaus2::bambam::ChromosomeVectorMerge::ChromosomeVectorMerge(const std::vector*>&, bool)’ at ./libmaus2/bambam/ChromosomeVectorMerge.hpp:204:38: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::set; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘libmaus2::bambam::ChromosomeVectorMerge::ChromosomeVectorMerge(const std::vector*>&, bool)’ at ./libmaus2/bambam/ChromosomeVectorMerge.hpp:206:20: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::set; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘libmaus2::bambam::ChromosomeVectorMerge::ChromosomeVectorMerge(const std::vector*>&, bool)’ at ./libmaus2/bambam/ChromosomeVectorMerge.hpp:206:40: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In function ‘constexpr std::pair std::equal_range(_FIter, _FIter, const _Tp&, _Compare) [with _FIter = __gnu_cxx::__normal_iterator >; _Tp = libmaus2::bambam::Chromosome; _Compare = libmaus2::bambam::ChromosomeVectorMerge::ChromosomeIndexComparator]’, inlined from ‘libmaus2::bambam::ChromosomeVectorMerge::ChromosomeVectorMerge(const std::vector*>&, bool)’ at ./libmaus2/bambam/ChromosomeVectorMerge.hpp:249:56: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:2180:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2180 | return std::__equal_range(__first, __last, __val, __comp); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = std::__cxx11::basic_string; _Tp = long long unsigned int; _Compare = std::less >; _Alloc = std::allocator, long long unsigned int> >]’, inlined from ‘libmaus2::bambam::ProgramHeaderLineSet::ProgramHeaderLineSet(const std::string&)’ at ./libmaus2/bambam/ProgramHeaderLineSet.hpp:56:38: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:559:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, long long unsigned int>, std::_Select1st, long long unsigned int> >, std::less >, std::allocator, long long unsigned int> > >::const_iterator’ changed in GCC 7.1 559 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = std::__cxx11::basic_string; _Tp = long long unsigned int; _Compare = std::less >; _Alloc = std::allocator, long long unsigned int> >]’, inlined from ‘libmaus2::bambam::ProgramHeaderLinesMerge::ProgramHeaderLinesMerge(const std::vector*>&)’ at ./libmaus2/bambam/ProgramHeaderLineSet.hpp:397:35: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:559:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, long long unsigned int>, std::_Select1st, long long unsigned int> >, std::less >, std::allocator, long long unsigned int> > >::const_iterator’ changed in GCC 7.1 559 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string; _Tp = long long unsigned int; _Compare = std::less >; _Alloc = std::allocator, long long unsigned int> >]’, inlined from ‘libmaus2::bambam::ProgramHeaderLinesMerge::ProgramHeaderLinesMerge(const std::vector*>&)’ at ./libmaus2/bambam/ProgramHeaderLineSet.hpp:412:68: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, long long unsigned int>, std::_Select1st, long long unsigned int> >, std::less >, std::allocator, long long unsigned int> > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string; _Tp = long long unsigned int; _Compare = std::less >; _Alloc = std::allocator, long long unsigned int> >]’, inlined from ‘libmaus2::bambam::ProgramHeaderLinesMerge::ProgramHeaderLinesMerge(const std::vector*>&)’ at ./libmaus2/bambam/ProgramHeaderLineSet.hpp:475:21: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, long long unsigned int>, std::_Select1st, long long unsigned int> >, std::less >, std::allocator, long long unsigned int> > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In static member function ‘static libmaus2::hashing::ConstantStringHash::shared_ptr_type libmaus2::hashing::ConstantStringHash::constructShared(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]’, inlined from ‘void libmaus2::bambam::BamHeader::initSetup()’ at ./libmaus2/bambam/BamHeader.hpp:965:67: ./libmaus2/hashing/ConstantStringHash.hpp:86:59: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 86 | shared_ptr_type s(new this_type(ita,ite,maxn)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h: In function ‘constexpr void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Distance = int; _Tp = pair; _Compare = less]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:229:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 229 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h: In function ‘constexpr void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Size = int; _Compare = less]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1884:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1884 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1884:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 In function ‘constexpr void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = less]’, inlined from ‘constexpr _RandomAccessIterator std::__unguarded_partition_pivot(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = less]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1863:34, inlined from ‘constexpr void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Size = int; _Compare = less]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1897:38: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:94:27: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 94 | std::iter_swap(__result, __b); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:96:27: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 96 | std::iter_swap(__result, __c); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:98:27: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 98 | std::iter_swap(__result, __a); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h: In function ‘constexpr void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Size = int; _Compare = less]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1898:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1898 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘constexpr void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = less]’, inlined from ‘constexpr void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator*, vector > >]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:4817:18, inlined from ‘std::vector > libmaus2::bambam::BamIndex::reg2chunks(uint64_t, uint64_t, uint64_t) const’ at ./libmaus2/bambam/BamIndex.hpp:379:14: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1913:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1913 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1914 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1915 | __comp); | ~~~~~~~ In function ‘constexpr void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = less]’, inlined from ‘constexpr void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = less]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1916:31, inlined from ‘constexpr void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator*, vector > >]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:4817:18, inlined from ‘std::vector > libmaus2::bambam::BamIndex::reg2chunks(uint64_t, uint64_t, uint64_t) const’ at ./libmaus2/bambam/BamIndex.hpp:379:14: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1821:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1821 | std::__insertion_sort(__first, __first + __threshold, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1826:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1826 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testbamtofastq test/testbamtofastq-testbamtofastq.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testbamtofastq test/testbamtofastq-testbamtofastq.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testbamrange-testbamrange.o `test -f 'test/testbamrange.cpp' || echo './'`test/testbamrange.cpp In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/bambam/BamAuxFilterVector.hpp:22, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:27, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from ./libmaus2/bambam/BamRangeDecoder.hpp:22, from test/testbamrange.cpp:20: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/bambam/CigarStringParser.hpp:25, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ In file included from ./libmaus2/bambam/BamAlignmentDecoder.hpp:24: ./libmaus2/bambam/BamHeaderLowMem.hpp: In member function ‘void libmaus2::bambam::BamHeaderLowMem::setupFromText()’: ./libmaus2/bambam/BamHeaderLowMem.hpp:366:58: warning: variable ‘ln’ set but not used [-Wunused-but-set-variable=] 366 | uint64_t ln = 0; | ^~ In file included from /usr/arm-linux-gnueabihf/include/c++/16/algorithm:63, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h: In function ‘constexpr void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = less]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1884:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1884 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1884:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1898:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1898 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h: In function ‘constexpr void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = less]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1770:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1770 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1770:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 In function ‘constexpr void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = less]’, inlined from ‘constexpr void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:4817:18, inlined from ‘void libmaus2::trie::LinearHashTrie<_char_type, _id_type>::fillDepthParent() [with _char_type = char; _id_type = unsigned int]’ at ./libmaus2/trie/TrieState.hpp:261:14: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1913:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1913 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1914 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1915 | __comp); | ~~~~~~~ In file included from ./libmaus2/bambam/BamHeader.hpp:36, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:30: ./libmaus2/hashing/ConstantStringHash.hpp: In constructor ‘libmaus2::hashing::ConstantStringHash::ConstantStringHash(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]’: ./libmaus2/hashing/ConstantStringHash.hpp:96:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 96 | ConstantStringHash(iterator ita, iterator ite, uint64_t const maxn = 64*1024) | ^~~~~~~~~~~~~~~~~~ ./libmaus2/hashing/ConstantStringHash.hpp:96:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/16/string:55, from /usr/arm-linux-gnueabihf/include/c++/16/bits/locale_classes.h:43, from /usr/arm-linux-gnueabihf/include/c++/16/bits/ios_base.h:43, from /usr/arm-linux-gnueabihf/include/c++/16/ios:46, from /usr/arm-linux-gnueabihf/include/c++/16/bits/ostream.h:43, from /usr/arm-linux-gnueabihf/include/c++/16/ostream:42, from ./libmaus2/bambam/AlignmentValidity.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:23: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algobase.h: In function ‘constexpr void std::iter_swap(_ForwardIterator1, _ForwardIterator2) [with _ForwardIterator1 = __gnu_cxx::__normal_iterator*, vector > >; _ForwardIterator2 = __gnu_cxx::__normal_iterator*, vector > >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algobase.h:154:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 154 | iter_swap(_ForwardIterator1 __a, _ForwardIterator2 __b) | ^~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algobase.h:154:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 In static member function ‘static libmaus2::hashing::ConstantStringHash::shared_ptr_type libmaus2::hashing::ConstantStringHash::constructShared(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]’, inlined from ‘void libmaus2::bambam::BamHeader::initSetup()’ at ./libmaus2/bambam/BamHeader.hpp:965:67: ./libmaus2/hashing/ConstantStringHash.hpp:86:59: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 86 | shared_ptr_type s(new this_type(ita,ite,maxn)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:61: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h: In function ‘constexpr void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Distance = int; _Tp = pair; _Compare = less]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:229:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 229 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h: In function ‘constexpr void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Size = int; _Compare = less]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1884:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1884 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1884:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 In function ‘constexpr void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = less]’, inlined from ‘constexpr _RandomAccessIterator std::__unguarded_partition_pivot(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = less]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1863:34, inlined from ‘constexpr void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Size = int; _Compare = less]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1897:38: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:94:27: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 94 | std::iter_swap(__result, __b); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:96:27: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 96 | std::iter_swap(__result, __c); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:98:27: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 98 | std::iter_swap(__result, __a); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h: In function ‘constexpr void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Size = int; _Compare = less]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1898:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1898 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘constexpr void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = less]’, inlined from ‘constexpr void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator*, vector > >]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:4817:18, inlined from ‘std::vector > libmaus2::bambam::BamIndex::reg2chunks(uint64_t, uint64_t, uint64_t) const’ at ./libmaus2/bambam/BamIndex.hpp:379:14: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1913:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1913 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1914 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1915 | __comp); | ~~~~~~~ In function ‘constexpr void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = less]’, inlined from ‘constexpr void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = less]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1916:31, inlined from ‘constexpr void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator*, vector > >]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:4817:18, inlined from ‘std::vector > libmaus2::bambam::BamIndex::reg2chunks(uint64_t, uint64_t, uint64_t) const’ at ./libmaus2/bambam/BamIndex.hpp:379:14: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1821:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1821 | std::__insertion_sort(__first, __first + __threshold, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1826:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1826 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testbamrange test/testbamrange-testbamrange.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testbamrange test/testbamrange-testbamrange.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testbamdamage-testbamdamage.o `test -f 'test/testbamdamage.cpp' || echo './'`test/testbamdamage.cpp In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/bambam/BamAuxFilterVector.hpp:22, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:27, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from test/testbamdamage.cpp:3: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/bambam/CigarStringParser.hpp:25, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ In file included from ./libmaus2/bambam/BamAlignmentDecoder.hpp:24: ./libmaus2/bambam/BamHeaderLowMem.hpp: In member function ‘void libmaus2::bambam::BamHeaderLowMem::setupFromText()’: ./libmaus2/bambam/BamHeaderLowMem.hpp:366:58: warning: variable ‘ln’ set but not used [-Wunused-but-set-variable=] 366 | uint64_t ln = 0; | ^~ test/testbamdamage.cpp: In function ‘int main()’: test/testbamdamage.cpp:19:26: warning: variable ‘total’ set but not used [-Wunused-but-set-variable=] 19 | uint64_t total = 0; | ^~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/16/algorithm:63, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/lz/StreamWrapperBuffer.hpp:23, from ./libmaus2/lz/StreamWrapper.hpp:22, from ./libmaus2/lz/GzipHeader.hpp:22, from ./libmaus2/lz/GzipSingleStream.hpp:22, from ./libmaus2/lz/GzipStream.hpp:22, from ./libmaus2/lz/GzipStreamWrapper.hpp:22, from ./libmaus2/lz/BufferedGzipStream.hpp:22, from test/testbamdamage.cpp:1: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h: In function ‘constexpr void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = less]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1884:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1884 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1884:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1898:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1898 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘constexpr void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = less]’, inlined from ‘constexpr void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:4817:18, inlined from ‘void libmaus2::trie::LinearHashTrie<_char_type, _id_type>::fillDepthParent() [with _char_type = char; _id_type = unsigned int]’ at ./libmaus2/trie/TrieState.hpp:261:14: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1913:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1913 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1914 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1915 | __comp); | ~~~~~~~ In file included from ./libmaus2/bambam/BamHeader.hpp:36, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:30: ./libmaus2/hashing/ConstantStringHash.hpp: In constructor ‘libmaus2::hashing::ConstantStringHash::ConstantStringHash(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]’: ./libmaus2/hashing/ConstantStringHash.hpp:96:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 96 | ConstantStringHash(iterator ita, iterator ite, uint64_t const maxn = 64*1024) | ^~~~~~~~~~~~~~~~~~ ./libmaus2/hashing/ConstantStringHash.hpp:96:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In static member function ‘static libmaus2::hashing::ConstantStringHash::shared_ptr_type libmaus2::hashing::ConstantStringHash::constructShared(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]’, inlined from ‘void libmaus2::bambam::BamHeader::initSetup()’ at ./libmaus2/bambam/BamHeader.hpp:965:67: ./libmaus2/hashing/ConstantStringHash.hpp:86:59: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 86 | shared_ptr_type s(new this_type(ita,ite,maxn)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testbamdamage test/testbamdamage-testbamdamage.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testbamdamage test/testbamdamage-testbamdamage.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testgamma-testgamma.o `test -f 'test/testgamma.cpp' || echo './'`test/testgamma.cpp In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/util/IntervalTree.hpp:25, from ./libmaus2/util/GenericIntervalTree.hpp:23, from ./libmaus2/gamma/SparseGammaGapFileIndexDecoder.hpp:24, from ./libmaus2/gamma/SparseGammaGapFileIndexMultiDecoder.hpp:22, from ./libmaus2/gamma/SparseGammaGapConcatDecoder.hpp:22, from ./libmaus2/gamma/SparseGammaGapMerge.hpp:24, from test/testgamma.cpp:42: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from test/testgamma.cpp:1899: ./libmaus2/gamma/GammaFlaggedIntervalEncoder.hpp: In member function ‘void libmaus2::gamma::GammaFlaggedIntervalEncoder::flushInternal()’: ./libmaus2/gamma/GammaFlaggedIntervalEncoder.hpp:76:50: warning: variable ‘vsum’ set but not used [-Wunused-but-set-variable=] 76 | uint64_t vsum = pa[0].to-pa[0].from; | ^~~~ In file included from ./libmaus2/huffman/huffman.hpp:183, from ./libmaus2/huffman/CanonicalEncoder.hpp:26, from ./libmaus2/huffman/RLEncoder.hpp:25, from ./libmaus2/gamma/GammaPartitionEncoder.hpp:26, from test/testgamma.cpp:23: ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 2]’: ./libmaus2/huffman/HuffmanSorting.hpp:860:55: required from here 860 | huffman::EncodeTable enctable ( root ); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:188: ./libmaus2/huffman/HuffmanSorting.hpp: In instantiation of ‘static void libmaus2::huffman::HuffmanSorting::uncompressHuffmanCoded(uint64_t*, uint64_t, uint64_t, uint64_t, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::HuffmanTreeNode*, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::EncodeTable&) [with unsigned int lookupwords = 2; uint64_t = long long unsigned int]’: ./libmaus2/huffman/HuffmanSorting.hpp:1091:27: required from here 1091 | uncompressHuffmanCoded(acode.get(), 0 /* bit offset */, lowhalf /* syms */, firsthighsym, enctable,dectable,root.get(),dectable0,dectable1,enctable0,enctable1); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/huffman/HuffmanSorting.hpp:534:42: warning: variable ‘alldecoffset’ set but not used [-Wunused-but-set-variable=] 534 | uint64_t alldecoffset = highdecoffset; | ^~~~~~~~~~~~ ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 1]’: ./libmaus2/huffman/CanonicalEncoder.hpp:219:116: required from here 219 | return ::libmaus2::huffman::EncodeTable<1>::unique_ptr_type(new ::libmaus2::huffman::EncodeTable<1>(Ptree.get())); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/16/map:64, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:51, from ./libmaus2/math/numbits.hpp:24, from ./libmaus2/gamma/GammaGenericBase.hpp:21, from ./libmaus2/gamma/GammaGenericEncoder.hpp:21, from test/testgamma.cpp:19: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h: In function ‘std::pair::rebind<_Val>::other>::pointer>::_Base_ptr, typename std::__rb_tree::_Node_traits<_Val, typename __gnu_cxx::__alloc_traits::rebind<_Val>::other>::pointer>::_Base_ptr> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(const_iterator, const key_type&) [with _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h:2952:5: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 2952 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >::SparseGammaGapMergeInfo> >; _KeyOfValue = std::_Select1st >::SparseGammaGapMergeInfo> > >; _Compare = std::less; _Alloc = std::allocator >::SparseGammaGapMergeInfo> > >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h:3250:7: note: parameter passing for argument of type ‘std::_Rb_tree >::SparseGammaGapMergeInfo> >, std::_Select1st >::SparseGammaGapMergeInfo> > >, std::less, std::allocator >::SparseGammaGapMergeInfo> > > >::const_iterator’ changed in GCC 7.1 3250 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair::SparseGammaGapMergeInfo> >; _KeyOfValue = std::_Select1st::SparseGammaGapMergeInfo> > >; _Compare = std::less; _Alloc = std::allocator::SparseGammaGapMergeInfo> > >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h:3250:7: note: parameter passing for argument of type ‘std::_Rb_tree::SparseGammaGapMergeInfo> >, std::_Select1st::SparseGammaGapMergeInfo> > >, std::less, std::allocator::SparseGammaGapMergeInfo> > > >::const_iterator’ changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/16/algorithm:63, from ./libmaus2/autoarray/AutoArray.hpp:35: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h: In function ‘constexpr void std::__pop_heap(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Compare = less]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:257:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 257 | __pop_heap(_RandomAccessIterator __first, _RandomAccessIterator __last, | ^~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:257:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:257:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 In function ‘constexpr void std::pop_heap(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator > >; _Compare = less]’, inlined from ‘void std::priority_queue<_Tp, _Sequence, _Compare>::pop() [with _Tp = libmaus2::gamma::SparseGammaGapMultiFile; _Sequence = std::vector >; _Compare = std::less]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_queue.h:894:15: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:334:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 334 | std::__pop_heap(__first, __last, __last, __comp); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ./libmaus2/gamma/SparseGammaGapFileSet.hpp:25, from test/testgamma.cpp:44: ./libmaus2/gamma/GammaGapEncoder.hpp: In member function ‘void libmaus2::gamma::GammaGapEncoder::encode(iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]’: ./libmaus2/gamma/GammaGapEncoder.hpp:182:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 182 | void encode(iterator ita, uint64_t const n) | ^~~~~~ In member function ‘void libmaus2::gamma::GammaGapEncoder::encode(iterator, iterator) [with iterator = __gnu_cxx::__normal_iterator >]’, inlined from ‘void testgammagap()’ at test/testgamma.cpp:303:12: ./libmaus2/gamma/GammaGapEncoder.hpp:196:39: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 196 | encode(ita,n); | ~~~~~~^~~~~~~ In member function ‘void libmaus2::gamma::GammaGapEncoder::encode(iterator, iterator) [with iterator = __gnu_cxx::__normal_iterator >]’, inlined from ‘void testgammagap()’ at test/testgamma.cpp:305:13: ./libmaus2/gamma/GammaGapEncoder.hpp:196:39: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 196 | encode(ita,n); | ~~~~~~^~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/16/map:65: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr::SparseGammaGapMergeInfo>; _Compare = std::less; _Alloc = std::allocator::SparseGammaGapMergeInfo> > >]’, inlined from ‘bool libmaus2::gamma::SparseGammaGapMultiFileLevelSetTemplate<_data_type>::checkMergePacket(uint64_t&, uint64_t&) [with _data_type = long long unsigned int]’ at ./libmaus2/gamma/SparseGammaGapMultiFileLevelSet.hpp:167:18: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree::SparseGammaGapMergeInfo> >, std::_Select1st::SparseGammaGapMergeInfo> > >, std::less, std::allocator::SparseGammaGapMergeInfo> > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr >::SparseGammaGapMergeInfo>; _Compare = std::less; _Alloc = std::allocator >::SparseGammaGapMergeInfo> > >]’, inlined from ‘bool libmaus2::gamma::SparseGammaGapMultiFileLevelSetTemplate<_data_type>::checkMergePacket(uint64_t&, uint64_t&) [with _data_type = libmaus2::math::UnsignedInteger<4>]’ at ./libmaus2/gamma/SparseGammaGapMultiFileLevelSet.hpp:167:18: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >::SparseGammaGapMergeInfo> >, std::_Select1st >::SparseGammaGapMergeInfo> > >, std::less, std::allocator >::SparseGammaGapMergeInfo> > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h:3250:7: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 3250 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = long long unsigned int; _Tp = std::deque; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘void libmaus2::gamma::SparseGammaGapFileLevelSetTemplate<_data_type>::addFile(const std::string&) [with _data_type = long long unsigned int]’ at ./libmaus2/gamma/SparseGammaGapFileLevelSet.hpp:114:20: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:559:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 559 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = long long unsigned int; _Tp = std::deque; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘void libmaus2::gamma::SparseGammaGapFileLevelSetTemplate<_data_type>::addFile(const std::string&) [with _data_type = long long unsigned int]’ at ./libmaus2/gamma/SparseGammaGapFileLevelSet.hpp:124:22: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:559:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 559 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = long long unsigned int; _Tp = std::deque; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘void libmaus2::gamma::SparseGammaGapFileLevelSetTemplate<_data_type>::addFile(const std::string&) [with _data_type = libmaus2::math::UnsignedInteger<4>]’ at ./libmaus2/gamma/SparseGammaGapFileLevelSet.hpp:114:20: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:559:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 559 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = long long unsigned int; _Tp = std::deque; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘void libmaus2::gamma::SparseGammaGapFileLevelSetTemplate<_data_type>::addFile(const std::string&) [with _data_type = libmaus2::math::UnsignedInteger<4>]’ at ./libmaus2/gamma/SparseGammaGapFileLevelSet.hpp:124:22: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:559:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 559 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In function ‘constexpr void std::pop_heap(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator > >; _Compare = less]’, inlined from ‘void std::priority_queue<_Tp, _Sequence, _Compare>::pop() [with _Tp = libmaus2::gamma::SparseGammaGapMultiFile; _Sequence = std::vector >; _Compare = std::less]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_queue.h:894:15, inlined from ‘bool libmaus2::gamma::SparseGammaGapMultiFileSetTemplate<_data_type>::needMerge() [with _data_type = long long unsigned int]’ at ./libmaus2/gamma/SparseGammaGapMultiFileSet.hpp:56:54, inlined from ‘void libmaus2::gamma::SparseGammaGapMultiFileSetTemplate<_data_type>::addFile(const std::vector >&) [with _data_type = long long unsigned int]’ at ./libmaus2/gamma/SparseGammaGapMultiFileSet.hpp:128:22: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:334:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 334 | std::__pop_heap(__first, __last, __last, __comp); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘constexpr void std::pop_heap(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator > >; _Compare = less]’, inlined from ‘void std::priority_queue<_Tp, _Sequence, _Compare>::pop() [with _Tp = libmaus2::gamma::SparseGammaGapMultiFile; _Sequence = std::vector >; _Compare = std::less]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_queue.h:894:15, inlined from ‘bool libmaus2::gamma::SparseGammaGapMultiFileSetTemplate<_data_type>::needMerge() [with _data_type = long long unsigned int]’ at ./libmaus2/gamma/SparseGammaGapMultiFileSet.hpp:64:54, inlined from ‘void libmaus2::gamma::SparseGammaGapMultiFileSetTemplate<_data_type>::addFile(const std::vector >&) [with _data_type = long long unsigned int]’ at ./libmaus2/gamma/SparseGammaGapMultiFileSet.hpp:128:22: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:334:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 334 | std::__pop_heap(__first, __last, __last, __comp); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘constexpr void std::pop_heap(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator > >; _Compare = less]’, inlined from ‘void std::priority_queue<_Tp, _Sequence, _Compare>::pop() [with _Tp = libmaus2::gamma::SparseGammaGapMultiFile; _Sequence = std::vector >; _Compare = std::less]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_queue.h:894:15, inlined from ‘bool libmaus2::gamma::SparseGammaGapMultiFileSetTemplate<_data_type>::needMerge() [with _data_type = libmaus2::math::UnsignedInteger<4>]’ at ./libmaus2/gamma/SparseGammaGapMultiFileSet.hpp:56:54, inlined from ‘void libmaus2::gamma::SparseGammaGapMultiFileSetTemplate<_data_type>::addFile(const std::vector >&) [with _data_type = libmaus2::math::UnsignedInteger<4>]’ at ./libmaus2/gamma/SparseGammaGapMultiFileSet.hpp:128:22: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:334:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 334 | std::__pop_heap(__first, __last, __last, __comp); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘constexpr void std::pop_heap(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator > >; _Compare = less]’, inlined from ‘void std::priority_queue<_Tp, _Sequence, _Compare>::pop() [with _Tp = libmaus2::gamma::SparseGammaGapMultiFile; _Sequence = std::vector >; _Compare = std::less]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_queue.h:894:15, inlined from ‘bool libmaus2::gamma::SparseGammaGapMultiFileSetTemplate<_data_type>::needMerge() [with _data_type = libmaus2::math::UnsignedInteger<4>]’ at ./libmaus2/gamma/SparseGammaGapMultiFileSet.hpp:64:54, inlined from ‘void libmaus2::gamma::SparseGammaGapMultiFileSetTemplate<_data_type>::addFile(const std::vector >&) [with _data_type = libmaus2::math::UnsignedInteger<4>]’ at ./libmaus2/gamma/SparseGammaGapMultiFileSet.hpp:128:22: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:334:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 334 | std::__pop_heap(__first, __last, __last, __comp); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr::SparseGammaGapMergeInfo>; _Compare = std::less; _Alloc = std::allocator::SparseGammaGapMergeInfo> > >]’, inlined from ‘typename libmaus2::gamma::SparseGammaGapMergeTemplate<_data_type>::SparseGammaGapMergeInfo* libmaus2::gamma::SparseGammaGapMultiFileLevelSetTemplate<_data_type>::queueMergeInfo(const libmaus2::gamma::SparseGammaGapMultiFile&, const libmaus2::gamma::SparseGammaGapMultiFile&) [with _data_type = long long unsigned int]’ at ./libmaus2/gamma/SparseGammaGapMultiFileLevelSet.hpp:197:18: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree::SparseGammaGapMergeInfo> >, std::_Select1st::SparseGammaGapMergeInfo> > >, std::less, std::allocator::SparseGammaGapMergeInfo> > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr::SparseGammaGapMergeInfo>; _Compare = std::less; _Alloc = std::allocator::SparseGammaGapMergeInfo> > >]’, inlined from ‘typename libmaus2::gamma::SparseGammaGapMergeTemplate<_data_type>::SparseGammaGapMergeInfo* libmaus2::gamma::SparseGammaGapMultiFileLevelSetTemplate<_data_type>::queueMergeInfo(const libmaus2::gamma::SparseGammaGapMultiFile&, const libmaus2::gamma::SparseGammaGapMultiFile&) [with _data_type = long long unsigned int]’ at ./libmaus2/gamma/SparseGammaGapMultiFileLevelSet.hpp:198:14: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree::SparseGammaGapMergeInfo> >, std::_Select1st::SparseGammaGapMergeInfo> > >, std::less, std::allocator::SparseGammaGapMergeInfo> > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr >::SparseGammaGapMergeInfo>; _Compare = std::less; _Alloc = std::allocator >::SparseGammaGapMergeInfo> > >]’, inlined from ‘typename libmaus2::gamma::SparseGammaGapMergeTemplate<_data_type>::SparseGammaGapMergeInfo* libmaus2::gamma::SparseGammaGapMultiFileLevelSetTemplate<_data_type>::queueMergeInfo(const libmaus2::gamma::SparseGammaGapMultiFile&, const libmaus2::gamma::SparseGammaGapMultiFile&) [with _data_type = libmaus2::math::UnsignedInteger<4>]’ at ./libmaus2/gamma/SparseGammaGapMultiFileLevelSet.hpp:197:18: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >::SparseGammaGapMergeInfo> >, std::_Select1st >::SparseGammaGapMergeInfo> > >, std::less, std::allocator >::SparseGammaGapMergeInfo> > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr >::SparseGammaGapMergeInfo>; _Compare = std::less; _Alloc = std::allocator >::SparseGammaGapMergeInfo> > >]’, inlined from ‘typename libmaus2::gamma::SparseGammaGapMergeTemplate<_data_type>::SparseGammaGapMergeInfo* libmaus2::gamma::SparseGammaGapMultiFileLevelSetTemplate<_data_type>::queueMergeInfo(const libmaus2::gamma::SparseGammaGapMultiFile&, const libmaus2::gamma::SparseGammaGapMultiFile&) [with _data_type = libmaus2::math::UnsignedInteger<4>]’ at ./libmaus2/gamma/SparseGammaGapMultiFileLevelSet.hpp:198:14: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >::SparseGammaGapMergeInfo> >, std::_Select1st >::SparseGammaGapMergeInfo> > >, std::less, std::allocator >::SparseGammaGapMergeInfo> > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In function ‘constexpr void std::pop_heap(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator > >; _Compare = less]’, inlined from ‘void std::priority_queue<_Tp, _Sequence, _Compare>::pop() [with _Tp = libmaus2::gamma::SparseGammaGapMultiFile; _Sequence = std::vector >; _Compare = std::less]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_queue.h:894:15, inlined from ‘bool libmaus2::gamma::SparseGammaGapMultiFileSetTemplate<_data_type>::canMerge() [with _data_type = long long unsigned int]’ at ./libmaus2/gamma/SparseGammaGapMultiFileSet.hpp:79:54, inlined from ‘std::vector > libmaus2::gamma::SparseGammaGapMultiFileSetTemplate<_data_type>::merge(const std::string&) [with _data_type = long long unsigned int]’ at ./libmaus2/gamma/SparseGammaGapMultiFileSet.hpp:141:21: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:334:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 334 | std::__pop_heap(__first, __last, __last, __comp); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘constexpr void std::pop_heap(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator > >; _Compare = less]’, inlined from ‘void std::priority_queue<_Tp, _Sequence, _Compare>::pop() [with _Tp = libmaus2::gamma::SparseGammaGapMultiFile; _Sequence = std::vector >; _Compare = std::less]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_queue.h:894:15, inlined from ‘bool libmaus2::gamma::SparseGammaGapMultiFileSetTemplate<_data_type>::canMerge() [with _data_type = long long unsigned int]’ at ./libmaus2/gamma/SparseGammaGapMultiFileSet.hpp:87:54, inlined from ‘std::vector > libmaus2::gamma::SparseGammaGapMultiFileSetTemplate<_data_type>::merge(const std::string&) [with _data_type = long long unsigned int]’ at ./libmaus2/gamma/SparseGammaGapMultiFileSet.hpp:141:21: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:334:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 334 | std::__pop_heap(__first, __last, __last, __comp); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘constexpr void std::pop_heap(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator > >; _Compare = less]’, inlined from ‘void std::priority_queue<_Tp, _Sequence, _Compare>::pop() [with _Tp = libmaus2::gamma::SparseGammaGapMultiFile; _Sequence = std::vector >; _Compare = std::less]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_queue.h:894:15, inlined from ‘bool libmaus2::gamma::SparseGammaGapMultiFileSetTemplate<_data_type>::canMerge() [with _data_type = libmaus2::math::UnsignedInteger<4>]’ at ./libmaus2/gamma/SparseGammaGapMultiFileSet.hpp:79:54, inlined from ‘std::vector > libmaus2::gamma::SparseGammaGapMultiFileSetTemplate<_data_type>::merge(const std::string&) [with _data_type = libmaus2::math::UnsignedInteger<4>]’ at ./libmaus2/gamma/SparseGammaGapMultiFileSet.hpp:141:21: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:334:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 334 | std::__pop_heap(__first, __last, __last, __comp); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘constexpr void std::pop_heap(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator > >; _Compare = less]’, inlined from ‘void std::priority_queue<_Tp, _Sequence, _Compare>::pop() [with _Tp = libmaus2::gamma::SparseGammaGapMultiFile; _Sequence = std::vector >; _Compare = std::less]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_queue.h:894:15, inlined from ‘bool libmaus2::gamma::SparseGammaGapMultiFileSetTemplate<_data_type>::canMerge() [with _data_type = libmaus2::math::UnsignedInteger<4>]’ at ./libmaus2/gamma/SparseGammaGapMultiFileSet.hpp:87:54, inlined from ‘std::vector > libmaus2::gamma::SparseGammaGapMultiFileSetTemplate<_data_type>::merge(const std::string&) [with _data_type = libmaus2::math::UnsignedInteger<4>]’ at ./libmaus2/gamma/SparseGammaGapMultiFileSet.hpp:141:21: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:334:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 334 | std::__pop_heap(__first, __last, __last, __comp); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘constexpr void std::pop_heap(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator > >; _Compare = less]’, inlined from ‘void std::priority_queue<_Tp, _Sequence, _Compare>::pop() [with _Tp = libmaus2::gamma::SparseGammaGapMultiFile; _Sequence = std::vector >; _Compare = std::less]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_queue.h:894:15, inlined from ‘std::vector > libmaus2::gamma::SparseGammaGapMultiFileLevelSetTemplate<_data_type>::merge(const std::string&, uint64_t) [with _data_type = long long unsigned int]’ at ./libmaus2/gamma/SparseGammaGapMultiFileLevelSet.hpp:387:30: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:334:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 334 | std::__pop_heap(__first, __last, __last, __comp); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘constexpr void std::pop_heap(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator > >; _Compare = less]’, inlined from ‘void std::priority_queue<_Tp, _Sequence, _Compare>::pop() [with _Tp = libmaus2::gamma::SparseGammaGapMultiFile; _Sequence = std::vector >; _Compare = std::less]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_queue.h:894:15, inlined from ‘std::vector > libmaus2::gamma::SparseGammaGapMultiFileLevelSetTemplate<_data_type>::merge(const std::string&, uint64_t) [with _data_type = long long unsigned int]’ at ./libmaus2/gamma/SparseGammaGapMultiFileLevelSet.hpp:388:31: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:334:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 334 | std::__pop_heap(__first, __last, __last, __comp); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘constexpr void std::pop_heap(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator > >; _Compare = less]’, inlined from ‘void std::priority_queue<_Tp, _Sequence, _Compare>::pop() [with _Tp = libmaus2::gamma::SparseGammaGapMultiFile; _Sequence = std::vector >; _Compare = std::less]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_queue.h:894:15, inlined from ‘std::vector > libmaus2::gamma::SparseGammaGapMultiFileLevelSetTemplate<_data_type>::merge(const std::string&, uint64_t) [with _data_type = libmaus2::math::UnsignedInteger<4>]’ at ./libmaus2/gamma/SparseGammaGapMultiFileLevelSet.hpp:387:30: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:334:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 334 | std::__pop_heap(__first, __last, __last, __comp); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘constexpr void std::pop_heap(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator > >; _Compare = less]’, inlined from ‘void std::priority_queue<_Tp, _Sequence, _Compare>::pop() [with _Tp = libmaus2::gamma::SparseGammaGapMultiFile; _Sequence = std::vector >; _Compare = std::less]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_queue.h:894:15, inlined from ‘std::vector > libmaus2::gamma::SparseGammaGapMultiFileLevelSetTemplate<_data_type>::merge(const std::string&, uint64_t) [with _data_type = libmaus2::math::UnsignedInteger<4>]’ at ./libmaus2/gamma/SparseGammaGapMultiFileLevelSet.hpp:388:31: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:334:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 334 | std::__pop_heap(__first, __last, __last, __comp); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h:3250:7: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 3250 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::deque; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘void libmaus2::gamma::SparseGammaGapMultiFileLevelSetTemplate<_data_type>::checkMerge() [with _data_type = libmaus2::math::UnsignedInteger<4>]’ at ./libmaus2/gamma/SparseGammaGapMultiFileLevelSet.hpp:327:22: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::deque; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘void libmaus2::gamma::SparseGammaGapMultiFileLevelSetTemplate<_data_type>::checkMerge() [with _data_type = long long unsigned int]’ at ./libmaus2/gamma/SparseGammaGapMultiFileLevelSet.hpp:327:22: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h:3250:7: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 3250 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = long long unsigned int; _Tp = std::deque; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘void libmaus2::gamma::SparseGammaGapMultiFileLevelSetTemplate<_data_type>::addFile(const std::vector >&) [with _data_type = libmaus2::math::UnsignedInteger<4>]’ at ./libmaus2/gamma/SparseGammaGapMultiFileLevelSet.hpp:353:20, inlined from ‘void libmaus2::gamma::SparseGammaGapMultiFileLevelSetTemplate<_data_type>::addFile(const std::string&) [with _data_type = libmaus2::math::UnsignedInteger<4>]’ at ./libmaus2/gamma/SparseGammaGapMultiFileLevelSet.hpp:361:12, inlined from ‘void testsparsegammamultifilesetmergedense2()’ at test/testgamma.cpp:1526:15: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:559:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 559 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = long long unsigned int; _Tp = std::deque; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘void libmaus2::gamma::SparseGammaGapMultiFileLevelSetTemplate<_data_type>::addFile(const std::vector >&) [with _data_type = long long unsigned int]’ at ./libmaus2/gamma/SparseGammaGapMultiFileLevelSet.hpp:353:20, inlined from ‘void libmaus2::gamma::SparseGammaGapMultiFileLevelSetTemplate<_data_type>::addFile(const std::string&) [with _data_type = long long unsigned int]’ at ./libmaus2/gamma/SparseGammaGapMultiFileLevelSet.hpp:361:12, inlined from ‘void testsparsegammamultifilesetmerge()’ at test/testgamma.cpp:1354:15: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:559:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 559 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = long long unsigned int; _Tp = std::deque; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘void libmaus2::gamma::SparseGammaGapMultiFileLevelSetTemplate<_data_type>::addFile(const std::vector >&) [with _data_type = libmaus2::math::UnsignedInteger<4>]’ at ./libmaus2/gamma/SparseGammaGapMultiFileLevelSet.hpp:353:20, inlined from ‘void libmaus2::gamma::SparseGammaGapMultiFileLevelSetTemplate<_data_type>::addFile(const std::string&) [with _data_type = libmaus2::math::UnsignedInteger<4>]’ at ./libmaus2/gamma/SparseGammaGapMultiFileLevelSet.hpp:361:12, inlined from ‘void testsparsegammamultifilesetmerge2()’ at test/testgamma.cpp:1406:15: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:559:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 559 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = long long unsigned int; _Tp = std::deque; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘void libmaus2::gamma::SparseGammaGapMultiFileLevelSetTemplate<_data_type>::addFile(const std::vector >&) [with _data_type = long long unsigned int]’ at ./libmaus2/gamma/SparseGammaGapMultiFileLevelSet.hpp:353:20, inlined from ‘void libmaus2::gamma::SparseGammaGapMultiFileLevelSetTemplate<_data_type>::addFile(const std::string&) [with _data_type = long long unsigned int]’ at ./libmaus2/gamma/SparseGammaGapMultiFileLevelSet.hpp:361:12, inlined from ‘void testsparsegammamultifilesetmergedense()’ at test/testgamma.cpp:1462:15: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:559:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 559 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testgamma test/testgamma-testgamma.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testgamma test/testgamma-testgamma.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testcompact-testcompact.o `test -f 'test/testcompact.cpp' || echo './'`test/testcompact.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testcompact test/testcompact-testcompact.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testcompact test/testcompact-testcompact.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testbytetocompact-testbytetocompact.o `test -f 'test/testbytetocompact.cpp' || echo './'`test/testbytetocompact.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testbytetocompact test/testbytetocompact-testbytetocompact.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testbytetocompact test/testbytetocompact-testbytetocompact.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testscramtosam-testscramtosam.o `test -f 'test/testscramtosam.cpp' || echo './'`test/testscramtosam.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testscramtosam test/testscramtosam-testscramtosam.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testscramtosam test/testscramtosam-testscramtosam.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testpacdecode-testpacdecode.o `test -f 'test/testpacdecode.cpp' || echo './'`test/testpacdecode.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testpacdecode test/testpacdecode-testpacdecode.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testpacdecode test/testpacdecode-testpacdecode.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testutf8split-testutf8split.o `test -f 'test/testutf8split.cpp' || echo './'`test/testutf8split.cpp In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/huffman/HuffmanTree.hpp:25, from ./libmaus2/wavelet/ImpCompactHuffmanWaveletTree.hpp:26, from test/testutf8split.cpp:31: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/huffman/huffman.hpp:183, from test/testutf8split.cpp:27: ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 2]’: ./libmaus2/huffman/HuffmanSorting.hpp:860:55: required from here 860 | huffman::EncodeTable enctable ( root ); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:188: ./libmaus2/huffman/HuffmanSorting.hpp: In instantiation of ‘static void libmaus2::huffman::HuffmanSorting::uncompressHuffmanCoded(uint64_t*, uint64_t, uint64_t, uint64_t, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::HuffmanTreeNode*, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::EncodeTable&) [with unsigned int lookupwords = 2; uint64_t = long long unsigned int]’: ./libmaus2/huffman/HuffmanSorting.hpp:1091:27: required from here 1091 | uncompressHuffmanCoded(acode.get(), 0 /* bit offset */, lowhalf /* syms */, firsthighsym, enctable,dectable,root.get(),dectable0,dectable1,enctable0,enctable1); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/huffman/HuffmanSorting.hpp:534:42: warning: variable ‘alldecoffset’ set but not used [-Wunused-but-set-variable=] 534 | uint64_t alldecoffset = highdecoffset; | ^~~~~~~~~~~~ ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 1]’: ./libmaus2/wavelet/ImpHuffmanWaveletTree.hpp:302:54: required from here 302 | : n(rn), sroot(rsroot), dicts(numnodes), root(0), enctable(sroot.get()), maxdepth(0), nodepos(rnodepos) | ^~~~~~~~~~~~~~~~~~~~~ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from test/testutf8split.cpp:35: ./libmaus2/wavelet/Utf8ToImpHuffmanWaveletTree.hpp: In instantiation of ‘static void libmaus2::wavelet::Utf8ToImpHuffmanWaveletTree::constructWaveletTree(const std::string&, const std::string&, libmaus2::huffman::HuffmanTreeNode::shared_ptr_type, uint64_t) [with bool radixsort = true; std::string = std::__cxx11::basic_string; libmaus2::huffman::HuffmanTreeNode::shared_ptr_type = std::shared_ptr; uint64_t = long long unsigned int]’: test/testutf8split.cpp:211:79: required from here 211 | ::libmaus2::wavelet::Utf8ToImpHuffmanWaveletTree::constructWaveletTree(fn,fn+".hwt",::libmaus2::huffman::HuffmanTreeNode::shared_ptr_type(),numthreads); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpHuffmanWaveletTree.hpp:310:90: warning: variable ‘l_numsyms0’ set but not used [-Wunused-but-set-variable=] 310 | uint64_t l_numsyms0 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpHuffmanWaveletTree.hpp:315:90: warning: variable ‘r_numsyms1’ set but not used [-Wunused-but-set-variable=] 315 | uint64_t r_numsyms1 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpHuffmanWaveletTree.hpp:195:66: warning: variable ‘numsyms1’ set but not used [-Wunused-but-set-variable=] 195 | uint64_t numsyms1 = 0; | ^~~~~~~~ In file included from test/testutf8split.cpp:205: ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp: In instantiation of ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTree(const std::string&, const std::string&, const libmaus2::huffman::HuffmanTree*, uint64_t) [with bool radixsort = true; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’: test/testutf8split.cpp:224:86: required from here 224 | ::libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTree(fn,fn+".hwt",H,numthreads); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:334:90: warning: variable ‘l_numsyms0’ set but not used [-Wunused-but-set-variable=] 334 | uint64_t l_numsyms0 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:339:90: warning: variable ‘r_numsyms1’ set but not used [-Wunused-but-set-variable=] 339 | uint64_t r_numsyms1 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:219:66: warning: variable ‘numsyms1’ set but not used [-Wunused-but-set-variable=] 219 | uint64_t numsyms1 = 0; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/16/map:64, from ./libmaus2/util/ArgInfo.hpp:23, from test/testutf8split.cpp:21: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h: In function ‘std::pair::rebind<_Val>::other>::pointer>::_Base_ptr, typename std::__rb_tree::_Node_traits<_Val, typename __gnu_cxx::__alloc_traits::rebind<_Val>::other>::pointer>::_Base_ptr> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(const_iterator, const key_type&) [with _Key = long long int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h:2952:5: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 2952 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = const libmaus2::huffman::HuffmanTreeInnerNode*; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h:3250:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 3250 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h:3250:7: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h:3250:7: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h:3250:7: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/16/map:65: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘virtual std::ostream& libmaus2::util::FileTempFileContainer::getOutputTempFile(uint64_t)’ at ./libmaus2/util/FileTempFileContainer.hpp:93:27: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘virtual std::istream& libmaus2::util::FileTempFileContainer::openInputTempFile(uint64_t)’ at ./libmaus2/util/FileTempFileContainer.hpp:121:17: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘virtual std::istream& libmaus2::util::FileTempFileContainer::openInputTempFile(uint64_t)’ at ./libmaus2/util/FileTempFileContainer.hpp:123:26: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::__cxx11::basic_string; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘virtual std::ostream& libmaus2::util::FileTempFileContainer::openOutputTempFile(uint64_t)’ at ./libmaus2/util/FileTempFileContainer.hpp:79:17: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::__cxx11::basic_string; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘virtual std::ostream& libmaus2::util::FileTempFileContainer::openOutputTempFile(uint64_t)’ at ./libmaus2/util/FileTempFileContainer.hpp:80:71: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::__cxx11::basic_string; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘virtual std::ostream& libmaus2::util::FileTempFileContainer::openOutputTempFile(uint64_t)’ at ./libmaus2/util/FileTempFileContainer.hpp:81:80: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘virtual std::ostream& libmaus2::util::FileTempFileContainer::openOutputTempFile(uint64_t)’ at ./libmaus2/util/FileTempFileContainer.hpp:81:18: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘virtual std::ostream& libmaus2::util::FileTempFileContainer::openOutputTempFile(uint64_t)’ at ./libmaus2/util/FileTempFileContainer.hpp:82:27: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = const libmaus2::huffman::HuffmanTreeInnerNode*; _Tp = long long unsigned int; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘libmaus2::wavelet::ImpExternalWaveletGeneratorHuffman::ImpExternalWaveletGeneratorHuffman(const libmaus2::huffman::HuffmanTreeNode*, libmaus2::util::TempFileContainer&)’ at ./libmaus2/wavelet/ImpExternalWaveletGeneratorHuffman.hpp:117:23: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = const libmaus2::huffman::HuffmanTreeInnerNode*; _Tp = long long unsigned int; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘void libmaus2::wavelet::ImpHuffmanWaveletTree::init()’ at ./libmaus2/wavelet/ImpHuffmanWaveletTree.hpp:168:23: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = const libmaus2::huffman::HuffmanTreeInnerNode*; _Tp = long long unsigned int; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void libmaus2::huffman::HuffmanTreeInnerNode::toDot(std::ostream&) const’ at ./libmaus2/huffman/HuffmanTreeInnerNode.hpp:193:71: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testutf8split test/testutf8split-testutf8split.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testutf8split test/testutf8split-testutf8split.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testcirchash-testcirchash.o `test -f 'test/testcirchash.cpp' || echo './'`test/testcirchash.cpp In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/bambam/BamAuxFilterVector.hpp:22, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:27, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testcirchash.cpp:20: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/bambam/CigarStringParser.hpp:25, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ In file included from ./libmaus2/bambam/BamAlignmentDecoder.hpp:24, from ./libmaus2/bambam/BamDecoder.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:23: ./libmaus2/bambam/BamHeaderLowMem.hpp: In member function ‘void libmaus2::bambam::BamHeaderLowMem::setupFromText()’: ./libmaus2/bambam/BamHeaderLowMem.hpp:366:58: warning: variable ‘ln’ set but not used [-Wunused-but-set-variable=] 366 | uint64_t ln = 0; | ^~ In file included from /usr/arm-linux-gnueabihf/include/c++/16/algorithm:63, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h: In function ‘constexpr void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = less]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1884:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1884 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1884:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1898:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1898 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘constexpr void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = less]’, inlined from ‘constexpr void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:4817:18, inlined from ‘void libmaus2::trie::LinearHashTrie<_char_type, _id_type>::fillDepthParent() [with _char_type = char; _id_type = unsigned int]’ at ./libmaus2/trie/TrieState.hpp:261:14: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1913:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1913 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1914 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1915 | __comp); | ~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:61: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h: In function ‘constexpr void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = libmaus2::bambam::BamAlignmentHeapComparator]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:141:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 141 | __push_heap(_RandomAccessIterator __first, | ^~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h: In function ‘constexpr void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = libmaus2::bambam::BamAlignmentHeapComparator]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:229:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 229 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In file included from ./libmaus2/bambam/BamHeader.hpp:36, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:30: ./libmaus2/hashing/ConstantStringHash.hpp: In constructor ‘libmaus2::hashing::ConstantStringHash::ConstantStringHash(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]’: ./libmaus2/hashing/ConstantStringHash.hpp:96:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 96 | ConstantStringHash(iterator ita, iterator ite, uint64_t const maxn = 64*1024) | ^~~~~~~~~~~~~~~~~~ ./libmaus2/hashing/ConstantStringHash.hpp:96:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In static member function ‘static libmaus2::hashing::ConstantStringHash::shared_ptr_type libmaus2::hashing::ConstantStringHash::constructShared(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]’, inlined from ‘void libmaus2::bambam::BamHeader::initSetup()’ at ./libmaus2/bambam/BamHeader.hpp:965:67: ./libmaus2/hashing/ConstantStringHash.hpp:86:59: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 86 | shared_ptr_type s(new this_type(ita,ite,maxn)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testcirchash test/testcirchash-testcirchash.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testcirchash test/testcirchash-testcirchash.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testrmmtree-testrmmtree.o `test -f 'test/testrmmtree.cpp' || echo './'`test/testrmmtree.cpp In file included from ./libmaus2/huffman/huffman.hpp:183, from ./libmaus2/util/ImpCompactNumberArray.hpp:26, from ./libmaus2/rmq/RMMTree.hpp:22, from test/testrmmtree.cpp:25: ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 2]’: ./libmaus2/huffman/HuffmanSorting.hpp:860:55: required from here 860 | huffman::EncodeTable enctable ( root ); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:188: ./libmaus2/huffman/HuffmanSorting.hpp: In instantiation of ‘static void libmaus2::huffman::HuffmanSorting::uncompressHuffmanCoded(uint64_t*, uint64_t, uint64_t, uint64_t, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::HuffmanTreeNode*, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::EncodeTable&) [with unsigned int lookupwords = 2; uint64_t = long long unsigned int]’: ./libmaus2/huffman/HuffmanSorting.hpp:1091:27: required from here 1091 | uncompressHuffmanCoded(acode.get(), 0 /* bit offset */, lowhalf /* syms */, firsthighsym, enctable,dectable,root.get(),dectable0,dectable1,enctable0,enctable1); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/huffman/HuffmanSorting.hpp:534:42: warning: variable ‘alldecoffset’ set but not used [-Wunused-but-set-variable=] 534 | uint64_t alldecoffset = highdecoffset; | ^~~~~~~~~~~~ ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 1]’: ./libmaus2/wavelet/ImpHuffmanWaveletTree.hpp:302:54: required from here 302 | : n(rn), sroot(rsroot), dicts(numnodes), root(0), enctable(sroot.get()), maxdepth(0), nodepos(rnodepos) | ^~~~~~~~~~~~~~~~~~~~~ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/16/map:64, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:51, from ./libmaus2/bitio/CompactArray.hpp:23, from ./libmaus2/util/ImpCompactNumberArray.hpp:24: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h: In function ‘std::pair::rebind<_Val>::other>::pointer>::_Base_ptr, typename std::__rb_tree::_Node_traits<_Val, typename __gnu_cxx::__alloc_traits::rebind<_Val>::other>::pointer>::_Base_ptr> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(const_iterator, const key_type&) [with _Key = long long int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h:2952:5: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 2952 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = const libmaus2::huffman::HuffmanTreeInnerNode*; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h:3250:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 3250 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair > >; _KeyOfValue = std::_Select1st > > >; _Compare = std::less; _Alloc = std::allocator > > >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h:3250:7: note: parameter passing for argument of type ‘std::_Rb_tree > >, std::_Select1st > > >, std::less, std::allocator > > > >::const_iterator’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair > >; _KeyOfValue = std::_Select1st > > >; _Compare = std::less; _Alloc = std::allocator > > >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h:3250:7: note: parameter passing for argument of type ‘std::_Rb_tree > >, std::_Select1st > > >, std::less, std::allocator > > > >::const_iterator’ changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/16/map:65: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr >; _Compare = std::less; _Alloc = std::allocator > > >]’, inlined from ‘virtual std::ostream& libmaus2::util::MemTempFileContainer::getOutputTempFile(uint64_t)’ at ./libmaus2/util/MemTempFileContainer.hpp:52:27: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree > >, std::_Select1st > > >, std::less, std::allocator > > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr >; _Compare = std::less; _Alloc = std::allocator > > >]’, inlined from ‘virtual std::istream& libmaus2::util::MemTempFileContainer::openInputTempFile(uint64_t)’ at ./libmaus2/util/MemTempFileContainer.hpp:68:18: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree > >, std::_Select1st > > >, std::less, std::allocator > > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr >; _Compare = std::less; _Alloc = std::allocator > > >]’, inlined from ‘virtual std::istream& libmaus2::util::MemTempFileContainer::openInputTempFile(uint64_t)’ at ./libmaus2/util/MemTempFileContainer.hpp:70:18: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree > >, std::_Select1st > > >, std::less, std::allocator > > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr >; _Compare = std::less; _Alloc = std::allocator > > >]’, inlined from ‘virtual std::istream& libmaus2::util::MemTempFileContainer::openInputTempFile(uint64_t)’ at ./libmaus2/util/MemTempFileContainer.hpp:72:26: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree > >, std::_Select1st > > >, std::less, std::allocator > > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr >; _Compare = std::less; _Alloc = std::allocator > > >]’, inlined from ‘virtual std::ostream& libmaus2::util::MemTempFileContainer::openOutputTempFile(uint64_t)’ at ./libmaus2/util/MemTempFileContainer.hpp:46:18: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree > >, std::_Select1st > > >, std::less, std::allocator > > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr >; _Compare = std::less; _Alloc = std::allocator > > >]’, inlined from ‘virtual std::ostream& libmaus2::util::MemTempFileContainer::openOutputTempFile(uint64_t)’ at ./libmaus2/util/MemTempFileContainer.hpp:47:27: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree > >, std::_Select1st > > >, std::less, std::allocator > > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ ./libmaus2/rmq/RMMTree.hpp: In static member function ‘static libmaus2::util::Histogram::unique_ptr_type libmaus2::rmq::RMMTree<_base_layer_type, _klog, _rmmtreedebug>::fillSubHistogram(in_iterator, uint64_t, uint64_t) [with in_iterator = __gnu_cxx::__normal_iterator >; _base_layer_type = std::vector; unsigned int _klog = 5; bool _rmmtreedebug = true]’: ./libmaus2/rmq/RMMTree.hpp:141:75: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 141 | static libmaus2::util::Histogram::unique_ptr_type fillSubHistogram( | ^~~~~~~~~~~~~~~~ ./libmaus2/rmq/RMMTree.hpp: In static member function ‘static void libmaus2::rmq::RMMTree<_base_layer_type, _klog, _rmmtreedebug>::fillSubArrays(in_iterator, uint64_t, libmaus2::bitio::CompactArray&, C_generator_type&, uint64_t, libmaus2::autoarray::AutoArray&, libmaus2::autoarray::AutoArray&) [with in_iterator = __gnu_cxx::__normal_iterator >; C_generator_type = libmaus2::util::ImpCompactNumberArrayGenerator; _base_layer_type = std::vector; unsigned int _klog = 5; bool _rmmtreedebug = true]’: ./libmaus2/rmq/RMMTree.hpp:236:37: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 236 | static void fillSubArrays( | ^~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = const libmaus2::huffman::HuffmanTreeInnerNode*; _Tp = long long unsigned int; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘libmaus2::wavelet::ImpExternalWaveletGeneratorHuffman::ImpExternalWaveletGeneratorHuffman(const libmaus2::huffman::HuffmanTreeNode*, libmaus2::util::TempFileContainer&)’ at ./libmaus2/wavelet/ImpExternalWaveletGeneratorHuffman.hpp:117:23: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = const libmaus2::huffman::HuffmanTreeInnerNode*; _Tp = long long unsigned int; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘void libmaus2::wavelet::ImpHuffmanWaveletTree::init()’ at ./libmaus2/wavelet/ImpHuffmanWaveletTree.hpp:168:23: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = const libmaus2::huffman::HuffmanTreeInnerNode*; _Tp = long long unsigned int; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void libmaus2::huffman::HuffmanTreeInnerNode::toDot(std::ostream&) const’ at ./libmaus2/huffman/HuffmanTreeInnerNode.hpp:193:71: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ ./libmaus2/rmq/RMMTree.hpp: In constructor ‘libmaus2::rmq::RMMTree<_base_layer_type, _klog, _rmmtreedebug>::RMMTree(const base_layer_type&, uint64_t, uint64_t, uint64_t, std::ostream*) [with _base_layer_type = std::vector; unsigned int _klog = 5; bool _rmmtreedebug = true]’: ./libmaus2/rmq/RMMTree.hpp:369:92: note: parameter passing for argument of type ‘std::vector::const_iterator’ changed in GCC 7.1 369 | libmaus2::util::Histogram::unique_ptr_type tsubhist(fillSubHistogram(B.begin(),in,numthreads)); | ^~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testrmmtree test/testrmmtree-testrmmtree.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testrmmtree test/testrmmtree-testrmmtree.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testcst-testcst.o `test -f 'test/testcst.cpp' || echo './'`test/testcst.cpp In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/huffman/HuffmanTree.hpp:25, from ./libmaus2/wavelet/ImpCompactHuffmanWaveletTree.hpp:26, from ./libmaus2/lf/ImpCompactHuffmanWaveletLF.hpp:23, from ./libmaus2/suffixtree/CompressedSuffixTree.hpp:22, from test/testcst.cpp:21: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/huffman/huffman.hpp:183, from ./libmaus2/util/ImpCompactNumberArray.hpp:26, from ./libmaus2/rmq/RMMTree.hpp:22, from ./libmaus2/suffixtree/CompressedSuffixTree.hpp:26: ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 2]’: ./libmaus2/huffman/HuffmanSorting.hpp:860:55: required from here 860 | huffman::EncodeTable enctable ( root ); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:188: ./libmaus2/huffman/HuffmanSorting.hpp: In instantiation of ‘static void libmaus2::huffman::HuffmanSorting::uncompressHuffmanCoded(uint64_t*, uint64_t, uint64_t, uint64_t, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::HuffmanTreeNode*, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::EncodeTable&) [with unsigned int lookupwords = 2; uint64_t = long long unsigned int]’: ./libmaus2/huffman/HuffmanSorting.hpp:1091:27: required from here 1091 | uncompressHuffmanCoded(acode.get(), 0 /* bit offset */, lowhalf /* syms */, firsthighsym, enctable,dectable,root.get(),dectable0,dectable1,enctable0,enctable1); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/huffman/HuffmanSorting.hpp:534:42: warning: variable ‘alldecoffset’ set but not used [-Wunused-but-set-variable=] 534 | uint64_t alldecoffset = highdecoffset; | ^~~~~~~~~~~~ ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 1]’: ./libmaus2/wavelet/ImpHuffmanWaveletTree.hpp:302:54: required from here 302 | : n(rn), sroot(rsroot), dicts(numnodes), root(0), enctable(sroot.get()), maxdepth(0), nodepos(rnodepos) | ^~~~~~~~~~~~~~~~~~~~~ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/16/map:64, from ./libmaus2/util/ArgInfo.hpp:23, from test/testcst.cpp:20: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = const libmaus2::huffman::HuffmanTreeInnerNode*; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h:3250:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 3250 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/16/map:65: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = const libmaus2::huffman::HuffmanTreeInnerNode*; _Tp = long long unsigned int; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘void libmaus2::wavelet::ImpHuffmanWaveletTree::init()’ at ./libmaus2/wavelet/ImpHuffmanWaveletTree.hpp:168:23: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = const libmaus2::huffman::HuffmanTreeInnerNode*; _Tp = long long unsigned int; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void libmaus2::huffman::HuffmanTreeInnerNode::toDot(std::ostream&) const’ at ./libmaus2/huffman/HuffmanTreeInnerNode.hpp:193:71: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testcst test/testcst-testcst.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testcst test/testcst-testcst.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testbamcmp-testbamcmp.o `test -f 'test/testbamcmp.cpp' || echo './'`test/testbamcmp.cpp In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/bambam/BamAuxFilterVector.hpp:22, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:27, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from test/testbamcmp.cpp:19: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/bambam/CigarStringParser.hpp:25, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ In file included from ./libmaus2/bambam/BamAlignmentDecoder.hpp:24: ./libmaus2/bambam/BamHeaderLowMem.hpp: In member function ‘void libmaus2::bambam::BamHeaderLowMem::setupFromText()’: ./libmaus2/bambam/BamHeaderLowMem.hpp:366:58: warning: variable ‘ln’ set but not used [-Wunused-but-set-variable=] 366 | uint64_t ln = 0; | ^~ In file included from /usr/arm-linux-gnueabihf/include/c++/16/algorithm:63, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h: In function ‘constexpr void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = less]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1884:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1884 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1884:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1898:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1898 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘constexpr void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = less]’, inlined from ‘constexpr void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:4817:18, inlined from ‘void libmaus2::trie::LinearHashTrie<_char_type, _id_type>::fillDepthParent() [with _char_type = char; _id_type = unsigned int]’ at ./libmaus2/trie/TrieState.hpp:261:14: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1913:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1913 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1914 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1915 | __comp); | ~~~~~~~ In file included from ./libmaus2/bambam/BamHeader.hpp:36, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:30: ./libmaus2/hashing/ConstantStringHash.hpp: In constructor ‘libmaus2::hashing::ConstantStringHash::ConstantStringHash(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]’: ./libmaus2/hashing/ConstantStringHash.hpp:96:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 96 | ConstantStringHash(iterator ita, iterator ite, uint64_t const maxn = 64*1024) | ^~~~~~~~~~~~~~~~~~ ./libmaus2/hashing/ConstantStringHash.hpp:96:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In static member function ‘static libmaus2::hashing::ConstantStringHash::shared_ptr_type libmaus2::hashing::ConstantStringHash::constructShared(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]’, inlined from ‘void libmaus2::bambam::BamHeader::initSetup()’ at ./libmaus2/bambam/BamHeader.hpp:965:67: ./libmaus2/hashing/ConstantStringHash.hpp:86:59: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 86 | shared_ptr_type s(new this_type(ita,ite,maxn)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testbamcmp test/testbamcmp-testbamcmp.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testbamcmp test/testbamcmp-testbamcmp.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testbamdif-testbamdif.o `test -f 'test/testbamdif.cpp' || echo './'`test/testbamdif.cpp In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/bambam/BamAuxFilterVector.hpp:22, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:27, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from test/testbamdif.cpp:19: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/bambam/CigarStringParser.hpp:25, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ In file included from ./libmaus2/bambam/BamAlignmentDecoder.hpp:24: ./libmaus2/bambam/BamHeaderLowMem.hpp: In member function ‘void libmaus2::bambam::BamHeaderLowMem::setupFromText()’: ./libmaus2/bambam/BamHeaderLowMem.hpp:366:58: warning: variable ‘ln’ set but not used [-Wunused-but-set-variable=] 366 | uint64_t ln = 0; | ^~ In file included from /usr/arm-linux-gnueabihf/include/c++/16/algorithm:63, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h: In function ‘constexpr void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = less]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1884:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1884 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1884:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1898:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1898 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘constexpr void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = less]’, inlined from ‘constexpr void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:4817:18, inlined from ‘void libmaus2::trie::LinearHashTrie<_char_type, _id_type>::fillDepthParent() [with _char_type = char; _id_type = unsigned int]’ at ./libmaus2/trie/TrieState.hpp:261:14: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1913:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1913 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1914 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1915 | __comp); | ~~~~~~~ In file included from ./libmaus2/bambam/BamHeader.hpp:36, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:30: ./libmaus2/hashing/ConstantStringHash.hpp: In constructor ‘libmaus2::hashing::ConstantStringHash::ConstantStringHash(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]’: ./libmaus2/hashing/ConstantStringHash.hpp:96:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 96 | ConstantStringHash(iterator ita, iterator ite, uint64_t const maxn = 64*1024) | ^~~~~~~~~~~~~~~~~~ ./libmaus2/hashing/ConstantStringHash.hpp:96:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In static member function ‘static libmaus2::hashing::ConstantStringHash::shared_ptr_type libmaus2::hashing::ConstantStringHash::constructShared(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]’, inlined from ‘void libmaus2::bambam::BamHeader::initSetup()’ at ./libmaus2/bambam/BamHeader.hpp:965:67: ./libmaus2/hashing/ConstantStringHash.hpp:86:59: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 86 | shared_ptr_type s(new this_type(ita,ite,maxn)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testbamdif test/testbamdif-testbamdif.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testbamdif test/testbamdif-testbamdif.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testqreorder-testqreorder.o `test -f 'test/testqreorder.cpp' || echo './'`test/testqreorder.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/16/algorithm:63, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/util/StringSerialisation.hpp:30, from ./libmaus2/util/ArgInfo.hpp:31, from test/testqreorder.cpp:21: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h: In function ‘constexpr void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = less]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1884:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1884 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1884:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1898:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1898 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘constexpr void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = less]’, inlined from ‘constexpr void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:4817:18, inlined from ‘std::vector filter(const std::vector&, uint64_t, unsigned int, unsigned int, unsigned int)’ at test/testqreorder.cpp:87:11: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1913:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1913 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1914 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1915 | __comp); | ~~~~~~~ In file included from test/testqreorder.cpp:22: ./libmaus2/fastx/QReorder.hpp: In constructor ‘libmaus2::fastx::QReorder4Component<_value_type, _qreorder_type>::QReorder4Component(const qreorder_type&, iterator, iterator, unsigned int) [with iterator = __gnu_cxx::__normal_iterator >; _value_type = long long unsigned int; _qreorder_type = libmaus2::fastx::QReorderTemplate4<2, libmaus2::fastx::select_two_01>]’: ./libmaus2/fastx/QReorder.hpp:718:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 718 | QReorder4Component( | ^~~~~~~~~~~~~~~~~~ ./libmaus2/fastx/QReorder.hpp:718:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 ./libmaus2/fastx/QReorder.hpp: In constructor ‘libmaus2::fastx::QReorder4Set<_k, _value_type>::QReorder4Set(unsigned int, iterator, iterator, unsigned int) [with iterator = __gnu_cxx::__normal_iterator >; unsigned int _k = 2; _value_type = long long unsigned int]’: ./libmaus2/fastx/QReorder.hpp:868:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 868 | QReorder4Set(unsigned int l, iterator ita, iterator ite, unsigned int const rlookupbits) | ^~~~~~~~~~~~ ./libmaus2/fastx/QReorder.hpp:868:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 ./libmaus2/fastx/QReorder.hpp:883:49: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 883 | rcomp01(new QReorder4Component< value_type,QReorderTemplate4 >(*reorder01, ita, ite, rlookupbits)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ test/testqreorder.cpp: In function ‘void testQReorder4Set()’: test/testqreorder.cpp:102:75: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 102 | libmaus2::fastx::QReorder4Set QR(l,V.begin(),V.end(),2); | ^ /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testqreorder test/testqreorder-testqreorder.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testqreorder test/testqreorder-testqreorder.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testfqbgzf-testfqbgzf.o `test -f 'test/testfqbgzf.cpp' || echo './'`test/testfqbgzf.cpp In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/util/IntervalTree.hpp:25, from ./libmaus2/fastx/FastInterval.hpp:25, from ./libmaus2/fastx/FastQReader.hpp:27, from ./libmaus2/fastx/StreamFastQReader.hpp:23, from test/testfqbgzf.cpp:23: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from test/testfqbgzf.cpp:38: ./libmaus2/clustering/KMeans.hpp: In static member function ‘static double libmaus2::clustering::KMeans::silhouette(const std::vector&, const std::vector&)’: ./libmaus2/clustering/KMeans.hpp:596:50: warning: variable ‘clusters’ set but not used [-Wunused-but-set-variable=] 596 | double clusters = 0.0; | ^~~~~~~~ ./libmaus2/clustering/KMeans.hpp: In static member function ‘static double libmaus2::clustering::KMeans::silhouette(const std::vector >&, const std::vector >&)’: ./libmaus2/clustering/KMeans.hpp:672:50: warning: variable ‘clusters’ set but not used [-Wunused-but-set-variable=] 672 | double clusters = 0.0; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/16/algorithm:63, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/util/StringSerialisation.hpp:30, from ./libmaus2/util/ArgInfo.hpp:31, from test/testfqbgzf.cpp:19: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h: In function ‘constexpr void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = less]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1884:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1884 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1884:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1898:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1898 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/clustering/KMeans.hpp: In function ‘static std::vector libmaus2::clustering::KMeans::kmeansCore(iterator, uint64_t, uint64_t, bool, uint64_t, double, const dissimilarity_type&) [with iterator = __gnu_cxx::__normal_iterator >; dissimilarity_type = SquareDissimilary]’: ./libmaus2/clustering/KMeans.hpp:371:52: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 371 | static std::vector kmeansCore( | ^~~~~~~~~~ In function ‘constexpr void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = less]’, inlined from ‘constexpr void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:4817:18, inlined from ‘static std::vector libmaus2::clustering::KMeans::kmeansCore(iterator, uint64_t, uint64_t, bool, uint64_t, double, const dissimilarity_type&) [with iterator = __gnu_cxx::__normal_iterator >; dissimilarity_type = SquareDissimilary]’ at ./libmaus2/clustering/KMeans.hpp:500:15: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1913:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1913 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1914 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1915 | __comp); | ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1913:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:61: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h: In function ‘constexpr void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Compare = libmaus2::lz::BgzfDeflateBlockIdComparator]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:229:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 229 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In static member function ‘static std::vector libmaus2::clustering::KMeans::kmeans(iterator, uint64_t, uint64_t, bool, uint64_t, uint64_t, double, const dissimilarity_type&) [with iterator = __gnu_cxx::__normal_iterator >; dissimilarity_type = SquareDissimilary]’, inlined from ‘static std::vector libmaus2::clustering::KMeans::kmeans(iterator, uint64_t, uint64_t, bool, uint64_t, uint64_t, double) [with iterator = __gnu_cxx::__normal_iterator >]’ at ./libmaus2/clustering/KMeans.hpp:554:102, inlined from ‘int main(int, char**)’ at test/testfqbgzf.cpp:51:84: ./libmaus2/clustering/KMeans.hpp:527:53: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 527 | std::vector R = kmeansCore(V,n,k,pp,maxloops,ethres,dissimilarity); | ^ ./libmaus2/clustering/KMeans.hpp:532:61: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 532 | std::vector RC = kmeansCore(V,n,k,pp,maxloops,ethres,dissimilarity); | ^~ /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testfqbgzf test/testfqbgzf-testfqbgzf.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testfqbgzf test/testfqbgzf-testfqbgzf.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testcompactfastrandom-testcompactfastrandom.o `test -f 'test/testcompactfastrandom.cpp' || echo './'`test/testcompactfastrandom.cpp In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/util/IntervalTree.hpp:25, from ./libmaus2/aio/FileFragment.hpp:27, from ./libmaus2/aio/ReorderConcatGenericInput.hpp:24, from ./libmaus2/fastx/CompactFastDecoder.hpp:22, from test/testcompactfastrandom.cpp:1: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testcompactfastrandom test/testcompactfastrandom-testcompactfastrandom.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testcompactfastrandom test/testcompactfastrandom-testcompactfastrandom.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testbamindex-testbamindex.o `test -f 'test/testbamindex.cpp' || echo './'`test/testbamindex.cpp In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/bambam/BamAuxFilterVector.hpp:22, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:27, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamIndexGenerator.hpp:31, from test/testbamindex.cpp:21: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/bambam/CigarStringParser.hpp:25, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ In file included from ./libmaus2/bambam/BamAlignmentDecoder.hpp:24, from ./libmaus2/bambam/BamDecoder.hpp:22, from test/testbamindex.cpp:23: ./libmaus2/bambam/BamHeaderLowMem.hpp: In member function ‘void libmaus2::bambam::BamHeaderLowMem::setupFromText()’: ./libmaus2/bambam/BamHeaderLowMem.hpp:366:58: warning: variable ‘ln’ set but not used [-Wunused-but-set-variable=] 366 | uint64_t ln = 0; | ^~ In file included from /usr/arm-linux-gnueabihf/include/c++/16/algorithm:63, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/bambam/BamIndexBin.hpp:22, from ./libmaus2/bambam/BamIndexRef.hpp:22, from ./libmaus2/bambam/BamIndex.hpp:22, from test/testbamindex.cpp:20: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h: In function ‘constexpr void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = less]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1884:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1884 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1884:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1898:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1898 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘constexpr void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = less]’, inlined from ‘constexpr void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:4817:18, inlined from ‘void libmaus2::trie::LinearHashTrie<_char_type, _id_type>::fillDepthParent() [with _char_type = char; _id_type = unsigned int]’ at ./libmaus2/trie/TrieState.hpp:261:14: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1913:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1913 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1914 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1915 | __comp); | ~~~~~~~ In file included from ./libmaus2/bambam/BamHeader.hpp:36, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:30: ./libmaus2/hashing/ConstantStringHash.hpp: In constructor ‘libmaus2::hashing::ConstantStringHash::ConstantStringHash(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]’: ./libmaus2/hashing/ConstantStringHash.hpp:96:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 96 | ConstantStringHash(iterator ita, iterator ite, uint64_t const maxn = 64*1024) | ^~~~~~~~~~~~~~~~~~ ./libmaus2/hashing/ConstantStringHash.hpp:96:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In static member function ‘static libmaus2::hashing::ConstantStringHash::shared_ptr_type libmaus2::hashing::ConstantStringHash::constructShared(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]’, inlined from ‘void libmaus2::bambam::BamHeader::initSetup()’ at ./libmaus2/bambam/BamHeader.hpp:965:67: ./libmaus2/hashing/ConstantStringHash.hpp:86:59: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 86 | shared_ptr_type s(new this_type(ita,ite,maxn)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testbamindex test/testbamindex-testbamindex.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testbamindex test/testbamindex-testbamindex.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testbamrewrite-testbamrewrite.o `test -f 'test/testbamrewrite.cpp' || echo './'`test/testbamrewrite.cpp In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/bambam/BamAuxFilterVector.hpp:22, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:27, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from ./libmaus2/bambam/BamParallelRewrite.hpp:23, from test/testbamrewrite.cpp:21: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/bambam/CigarStringParser.hpp:25, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ In file included from ./libmaus2/bambam/BamAlignmentDecoder.hpp:24: ./libmaus2/bambam/BamHeaderLowMem.hpp: In member function ‘void libmaus2::bambam::BamHeaderLowMem::setupFromText()’: ./libmaus2/bambam/BamHeaderLowMem.hpp:366:58: warning: variable ‘ln’ set but not used [-Wunused-but-set-variable=] 366 | uint64_t ln = 0; | ^~ In file included from /usr/arm-linux-gnueabihf/include/c++/16/algorithm:63, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/util/StringSerialisation.hpp:30, from ./libmaus2/util/ArgInfo.hpp:31, from test/testbamrewrite.cpp:20: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h: In function ‘constexpr void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = less]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1884:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1884 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1884:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1898:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1898 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘constexpr void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = less]’, inlined from ‘constexpr void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:4817:18, inlined from ‘void libmaus2::trie::LinearHashTrie<_char_type, _id_type>::fillDepthParent() [with _char_type = char; _id_type = unsigned int]’ at ./libmaus2/trie/TrieState.hpp:261:14: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1913:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1913 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1914 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1915 | __comp); | ~~~~~~~ In file included from ./libmaus2/bambam/BamHeader.hpp:36, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:30: ./libmaus2/hashing/ConstantStringHash.hpp: In constructor ‘libmaus2::hashing::ConstantStringHash::ConstantStringHash(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]’: ./libmaus2/hashing/ConstantStringHash.hpp:96:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 96 | ConstantStringHash(iterator ita, iterator ite, uint64_t const maxn = 64*1024) | ^~~~~~~~~~~~~~~~~~ ./libmaus2/hashing/ConstantStringHash.hpp:96:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:61: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h: In function ‘constexpr void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Compare = libmaus2::lz::BgzfInflateBlockIdComparator]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:229:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 229 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h: In function ‘constexpr void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Compare = libmaus2::lz::BgzfDeflateBlockIdComparator]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:229:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 In static member function ‘static libmaus2::hashing::ConstantStringHash::shared_ptr_type libmaus2::hashing::ConstantStringHash::constructShared(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]’, inlined from ‘void libmaus2::bambam::BamHeader::initSetup()’ at ./libmaus2/bambam/BamHeader.hpp:965:67: ./libmaus2/hashing/ConstantStringHash.hpp:86:59: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 86 | shared_ptr_type s(new this_type(ita,ite,maxn)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testbamrewrite test/testbamrewrite-testbamrewrite.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testbamrewrite test/testbamrewrite-testbamrewrite.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testfastqstream-testfastqstream.o `test -f 'test/testfastqstream.cpp' || echo './'`test/testfastqstream.cpp In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/util/IntervalTree.hpp:25, from ./libmaus2/fastx/FastInterval.hpp:25, from ./libmaus2/fastx/FastQReader.hpp:27, from ./libmaus2/fastx/StreamFastQReader.hpp:23, from test/testfastqstream.cpp:20: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testfastqstream test/testfastqstream-testfastqstream.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testfastqstream test/testfastqstream-testfastqstream.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testsort-testsort.o `test -f 'test/testsort.cpp' || echo './'`test/testsort.cpp In file included from test/testsort.cpp:22: ./libmaus2/huffman/LFRankPosEncoder.hpp: In member function ‘void libmaus2::huffman::LFRankPosEncoder::flush()’: ./libmaus2/huffman/LFRankPosEncoder.hpp:455:50: warning: variable ‘nummeta’ set but not used [-Wunused-but-set-variable=] 455 | uint64_t nummeta = 0; | ^~~~~~~ In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/util/IntervalTree.hpp:25, from ./libmaus2/aio/FileFragment.hpp:27, from ./libmaus2/sorting/PairFileSorting.hpp:27, from test/testsort.cpp:605: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/huffman/huffman.hpp:183, from ./libmaus2/huffman/CanonicalEncoder.hpp:26, from ./libmaus2/huffman/LFSupportDecoder.hpp:33, from test/testsort.cpp:20: ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 2]’: ./libmaus2/huffman/HuffmanSorting.hpp:860:55: required from here 860 | huffman::EncodeTable enctable ( root ); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:188: ./libmaus2/huffman/HuffmanSorting.hpp: In instantiation of ‘static void libmaus2::huffman::HuffmanSorting::uncompressHuffmanCoded(uint64_t*, uint64_t, uint64_t, uint64_t, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::HuffmanTreeNode*, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::EncodeTable&) [with unsigned int lookupwords = 2; uint64_t = long long unsigned int]’: ./libmaus2/huffman/HuffmanSorting.hpp:1091:27: required from here 1091 | uncompressHuffmanCoded(acode.get(), 0 /* bit offset */, lowhalf /* syms */, firsthighsym, enctable,dectable,root.get(),dectable0,dectable1,enctable0,enctable1); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/huffman/HuffmanSorting.hpp:534:42: warning: variable ‘alldecoffset’ set but not used [-Wunused-but-set-variable=] 534 | uint64_t alldecoffset = highdecoffset; | ^~~~~~~~~~~~ ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 1]’: ./libmaus2/huffman/CanonicalEncoder.hpp:219:116: required from here 219 | return ::libmaus2::huffman::EncodeTable<1>::unique_ptr_type(new ::libmaus2::huffman::EncodeTable<1>(Ptree.get())); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/16/algorithm:63, from /usr/include/boost/smart_ptr/shared_ptr.hpp:31, from /usr/include/boost/smart_ptr/atomic_shared_ptr.hpp:16, from ./libmaus2/util/atomic_shared_ptr.hpp:24, from ./libmaus2/parallel/threadpool/ThreadWorkPackage.hpp:23, from ./libmaus2/parallel/threadpool/ThreadPoolDispatcher.hpp:21, from ./libmaus2/parallel/threadpool/ThreadPool.hpp:34, from ./libmaus2/sorting/RankSearch.hpp:21, from test/testsort.cpp:19: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h: In function ‘constexpr void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = less]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1770:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1770 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1770:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/16/string:55, from /usr/arm-linux-gnueabihf/include/c++/16/bits/locale_classes.h:43, from /usr/arm-linux-gnueabihf/include/c++/16/bits/ios_base.h:43, from /usr/arm-linux-gnueabihf/include/c++/16/ios:46, from /usr/arm-linux-gnueabihf/include/c++/16/bits/ostream.h:43, from /usr/arm-linux-gnueabihf/include/c++/16/ostream:42, from ./libmaus2/parallel/threadpool/ThreadPool.hpp:21: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algobase.h: In function ‘constexpr void std::iter_swap(_ForwardIterator1, _ForwardIterator2) [with _ForwardIterator1 = __gnu_cxx::__normal_iterator*, vector > >; _ForwardIterator2 = __gnu_cxx::__normal_iterator*, vector > >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algobase.h:154:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 154 | iter_swap(_ForwardIterator1 __a, _ForwardIterator2 __b) | ^~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algobase.h:154:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h: In function ‘constexpr void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Size = int; _Compare = PSC]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1884:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1884 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1884:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 In function ‘constexpr void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = PSC]’, inlined from ‘constexpr _RandomAccessIterator std::__unguarded_partition_pivot(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = PSC]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1863:34, inlined from ‘constexpr void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Size = int; _Compare = PSC]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1897:38: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:94:27: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 94 | std::iter_swap(__result, __b); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:96:27: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 96 | std::iter_swap(__result, __c); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:98:27: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 98 | std::iter_swap(__result, __a); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h: In function ‘constexpr void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Size = int; _Compare = PSC]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1898:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1898 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/16/queue:70, from ./libmaus2/parallel/threadpool/ThreadPool.hpp:30: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h: In function ‘constexpr void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Distance = int; _Tp = pair; _Compare = less]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:229:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 229 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h: In function ‘constexpr void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Size = int; _Compare = less]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1884:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1884 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1884:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 In function ‘constexpr void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = less]’, inlined from ‘constexpr _RandomAccessIterator std::__unguarded_partition_pivot(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = less]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1863:34, inlined from ‘constexpr void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Size = int; _Compare = less]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1897:38: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:94:27: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 94 | std::iter_swap(__result, __b); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:96:27: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 96 | std::iter_swap(__result, __c); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:98:27: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 98 | std::iter_swap(__result, __a); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h: In function ‘constexpr void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Size = int; _Compare = less]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1898:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1898 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘constexpr void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = less]’, inlined from ‘constexpr void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator*, vector > >]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:4817:18, inlined from ‘void testpairfilesortingSecond(uint64_t)’ at test/testsort.cpp:674:11: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1913:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1913 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1914 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1915 | __comp); | ~~~~~~~ In function ‘constexpr void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = less]’, inlined from ‘constexpr void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = less]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1916:31, inlined from ‘constexpr void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator*, vector > >]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:4817:18, inlined from ‘void testpairfilesortingSecond(uint64_t)’ at test/testsort.cpp:674:11: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1821:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1821 | std::__insertion_sort(__first, __first + __threshold, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1826:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1826 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘constexpr void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = PSC]’, inlined from ‘constexpr void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator*, vector > >; _Compare = PSC]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:4849:18, inlined from ‘void testpairfilesortingSecond(uint64_t)’ at test/testsort.cpp:704:11: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1913:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1913 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1914 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1915 | __comp); | ~~~~~~~ In function ‘constexpr void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = PSC]’, inlined from ‘constexpr void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator*, vector > >; _Compare = PSC]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:4849:18, inlined from ‘void testpairfilesorting(uint64_t)’ at test/testsort.cpp:616:11: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1913:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1913 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1914 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1915 | __comp); | ~~~~~~~ In function ‘constexpr void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = less]’, inlined from ‘constexpr void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator*, vector > >]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:4817:18, inlined from ‘void testpairfilesorting(uint64_t)’ at test/testsort.cpp:646:11: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1913:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1913 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1914 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1915 | __comp); | ~~~~~~~ In function ‘constexpr void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = less]’, inlined from ‘constexpr void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = less]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1916:31, inlined from ‘constexpr void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator*, vector > >]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:4817:18, inlined from ‘void testpairfilesorting(uint64_t)’ at test/testsort.cpp:646:11: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1821:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1821 | std::__insertion_sort(__first, __first + __threshold, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1826:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1826 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testsort test/testsort-testsort.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testsort test/testsort-testsort.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testexternalsort-testexternalsort.o `test -f 'test/testexternalsort.cpp' || echo './'`test/testexternalsort.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/16/algorithm:63, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/aio/BufferedOutput.hpp:23, from ./libmaus2/sorting/MergingReadBack.hpp:23, from ./libmaus2/sorting/SortingBufferedOutputFile.hpp:22, from test/testexternalsort.cpp:20: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h: In function ‘constexpr void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Distance = int; _Tp = pair; _Compare = libmaus2::sorting::MergingReadBack >::HeapOrderAdapter]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:229:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 229 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testexternalsort test/testexternalsort-testexternalsort.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testexternalsort test/testexternalsort-testexternalsort.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testcollatespeed-testcollatespeed.o `test -f 'test/testcollatespeed.cpp' || echo './'`test/testcollatespeed.cpp In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/bambam/BamAuxFilterVector.hpp:22, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:27, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from test/testcollatespeed.cpp:21: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/bambam/CigarStringParser.hpp:25, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ In file included from ./libmaus2/bambam/BamAlignmentDecoder.hpp:24: ./libmaus2/bambam/BamHeaderLowMem.hpp: In member function ‘void libmaus2::bambam::BamHeaderLowMem::setupFromText()’: ./libmaus2/bambam/BamHeaderLowMem.hpp:366:58: warning: variable ‘ln’ set but not used [-Wunused-but-set-variable=] 366 | uint64_t ln = 0; | ^~ In file included from /usr/arm-linux-gnueabihf/include/c++/16/algorithm:63, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/util/StringSerialisation.hpp:30, from ./libmaus2/util/ArgInfo.hpp:31, from test/testcollatespeed.cpp:20: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h: In function ‘constexpr void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = less]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1884:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1884 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1884:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1898:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1898 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘constexpr void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = less]’, inlined from ‘constexpr void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:4817:18, inlined from ‘void libmaus2::trie::LinearHashTrie<_char_type, _id_type>::fillDepthParent() [with _char_type = char; _id_type = unsigned int]’ at ./libmaus2/trie/TrieState.hpp:261:14: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1913:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1913 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1914 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1915 | __comp); | ~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:61: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h: In function ‘constexpr void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = libmaus2::bambam::BamAlignmentHeapComparator]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:141:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 141 | __push_heap(_RandomAccessIterator __first, | ^~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h: In function ‘constexpr void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = libmaus2::bambam::BamAlignmentHeapComparator]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:229:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 229 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In file included from ./libmaus2/bambam/BamHeader.hpp:36, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:30: ./libmaus2/hashing/ConstantStringHash.hpp: In constructor ‘libmaus2::hashing::ConstantStringHash::ConstantStringHash(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]’: ./libmaus2/hashing/ConstantStringHash.hpp:96:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 96 | ConstantStringHash(iterator ita, iterator ite, uint64_t const maxn = 64*1024) | ^~~~~~~~~~~~~~~~~~ ./libmaus2/hashing/ConstantStringHash.hpp:96:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In static member function ‘static libmaus2::hashing::ConstantStringHash::shared_ptr_type libmaus2::hashing::ConstantStringHash::constructShared(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]’, inlined from ‘void libmaus2::bambam::BamHeader::initSetup()’ at ./libmaus2/bambam/BamHeader.hpp:965:67: ./libmaus2/hashing/ConstantStringHash.hpp:86:59: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 86 | shared_ptr_type s(new this_type(ita,ite,maxn)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testcollatespeed test/testcollatespeed-testcollatespeed.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testcollatespeed test/testcollatespeed-testcollatespeed.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testbamheaderparser-testbamheaderparser.o `test -f 'test/testbamheaderparser.cpp' || echo './'`test/testbamheaderparser.cpp In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/bambam/BamAuxFilterVector.hpp:22, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:27, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from ./libmaus2/bambam/BamRangeDecoder.hpp:22, from test/testbamheaderparser.cpp:20: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/bambam/CigarStringParser.hpp:25, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ In file included from ./libmaus2/bambam/BamAlignmentDecoder.hpp:24: ./libmaus2/bambam/BamHeaderLowMem.hpp: In member function ‘void libmaus2::bambam::BamHeaderLowMem::setupFromText()’: ./libmaus2/bambam/BamHeaderLowMem.hpp:366:58: warning: variable ‘ln’ set but not used [-Wunused-but-set-variable=] 366 | uint64_t ln = 0; | ^~ /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testbamheaderparser test/testbamheaderparser-testbamheaderparser.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testbamheaderparser test/testbamheaderparser-testbamheaderparser.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testbammergecoordinate-testbammergecoordinate.o `test -f 'test/testbammergecoordinate.cpp' || echo './'`test/testbammergecoordinate.cpp In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/bambam/BamAuxFilterVector.hpp:22, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:27, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamCatHeader.hpp:22, from ./libmaus2/bambam/BamMergeCoordinate.hpp:22, from test/testbammergecoordinate.cpp:20: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/bambam/CigarStringParser.hpp:25, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ In file included from ./libmaus2/bambam/BamAlignmentDecoder.hpp:24, from ./libmaus2/bambam/BamDecoder.hpp:22, from ./libmaus2/bambam/BamCatHeader.hpp:23: ./libmaus2/bambam/BamHeaderLowMem.hpp: In member function ‘void libmaus2::bambam::BamHeaderLowMem::setupFromText()’: ./libmaus2/bambam/BamHeaderLowMem.hpp:366:58: warning: variable ‘ln’ set but not used [-Wunused-but-set-variable=] 366 | uint64_t ln = 0; | ^~ In file included from /usr/arm-linux-gnueabihf/include/c++/16/algorithm:63, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/util/StringSerialisation.hpp:30, from ./libmaus2/util/ArgInfo.hpp:31, from test/testbammergecoordinate.cpp:19: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h: In function ‘constexpr void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = less]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1884:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1884 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1884:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1898:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1898 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h: In function ‘constexpr void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = less]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1770:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1770 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1770:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/16/map:64, from ./libmaus2/util/ArgInfo.hpp:23: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h:3250:7: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 3250 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘constexpr void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = less]’, inlined from ‘constexpr void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:4817:18, inlined from ‘void libmaus2::trie::LinearHashTrie<_char_type, _id_type>::fillDepthParent() [with _char_type = char; _id_type = unsigned int]’ at ./libmaus2/trie/TrieState.hpp:261:14: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1913:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1913 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1914 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1915 | __comp); | ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h: In member function ‘std::pair::rebind<_Val>::other>::pointer>::_Base_ptr, typename std::__rb_tree::_Node_traits<_Val, typename __gnu_cxx::__alloc_traits::rebind<_Val>::other>::pointer>::_Base_ptr> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(const_iterator, const key_type&) [with _Key = std::__cxx11::basic_string; _Val = std::pair, long long unsigned int>; _KeyOfValue = std::_Select1st, long long unsigned int> >; _Compare = std::less >; _Alloc = std::allocator, long long unsigned int> >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h:2952:5: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, long long unsigned int>, std::_Select1st, long long unsigned int> >, std::less >, std::allocator, long long unsigned int> > >::const_iterator’ changed in GCC 7.1 2952 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::allocator >&>, std::tuple<>}; _Key = std::__cxx11::basic_string; _Val = std::pair, long long unsigned int>; _KeyOfValue = std::_Select1st, long long unsigned int> >; _Compare = std::less >; _Alloc = std::allocator, long long unsigned int> >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h:3250:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, long long unsigned int>, std::_Select1st, long long unsigned int> >, std::less >, std::allocator, long long unsigned int> > >::const_iterator’ changed in GCC 7.1 3250 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::allocator >&&>, std::tuple<>}; _Key = std::__cxx11::basic_string; _Val = std::pair, long long unsigned int>; _KeyOfValue = std::_Select1st, long long unsigned int> >; _Compare = std::less >; _Alloc = std::allocator, long long unsigned int> >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h:3250:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, long long unsigned int>, std::_Select1st, long long unsigned int> >, std::less >, std::allocator, long long unsigned int> > >::const_iterator’ changed in GCC 7.1 In file included from ./libmaus2/bambam/BamHeader.hpp:36, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:30: ./libmaus2/hashing/ConstantStringHash.hpp: In constructor ‘libmaus2::hashing::ConstantStringHash::ConstantStringHash(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]’: ./libmaus2/hashing/ConstantStringHash.hpp:96:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 96 | ConstantStringHash(iterator ita, iterator ite, uint64_t const maxn = 64*1024) | ^~~~~~~~~~~~~~~~~~ ./libmaus2/hashing/ConstantStringHash.hpp:96:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:61: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h: In function ‘constexpr void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = libmaus2::bambam::BamMergeCoordinateHeapComparator]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:229:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 229 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/16/string:55, from ./libmaus2/util/ArgInfo.hpp:22: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algobase.h: In function ‘constexpr void std::iter_swap(_ForwardIterator1, _ForwardIterator2) [with _ForwardIterator1 = __gnu_cxx::__normal_iterator*, vector > >; _ForwardIterator2 = __gnu_cxx::__normal_iterator*, vector > >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algobase.h:154:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 154 | iter_swap(_ForwardIterator1 __a, _ForwardIterator2 __b) | ^~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algobase.h:154:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h: In function ‘constexpr void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Distance = int; _Tp = pair; _Compare = libmaus2::bambam::ReadGroupVectorMerge::ReadGroupIndexComparator]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:229:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 229 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h: In function ‘constexpr void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Size = int; _Compare = libmaus2::bambam::ReadGroupVectorMerge::ReadGroupIndexComparator]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1884:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1884 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1884:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 In function ‘constexpr void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = libmaus2::bambam::ReadGroupVectorMerge::ReadGroupIndexComparator]’, inlined from ‘constexpr _RandomAccessIterator std::__unguarded_partition_pivot(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = libmaus2::bambam::ReadGroupVectorMerge::ReadGroupIndexComparator]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1863:34, inlined from ‘constexpr void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Size = int; _Compare = libmaus2::bambam::ReadGroupVectorMerge::ReadGroupIndexComparator]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1897:38: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:94:27: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 94 | std::iter_swap(__result, __b); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:96:27: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 96 | std::iter_swap(__result, __c); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:98:27: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 98 | std::iter_swap(__result, __a); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h: In function ‘constexpr void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Size = int; _Compare = libmaus2::bambam::ReadGroupVectorMerge::ReadGroupIndexComparator]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1898:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1898 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h: In function ‘constexpr void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = libmaus2::bambam::ReadGroupVectorMerge::ReadGroupIndexComparator]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1770:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1770 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1770:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 In function ‘constexpr void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = libmaus2::bambam::ReadGroupVectorMerge::ReadGroupIndexComparator]’, inlined from ‘constexpr void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator*, vector > >; _Compare = libmaus2::bambam::ReadGroupVectorMerge::ReadGroupIndexComparator]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:4849:18, inlined from ‘libmaus2::bambam::ReadGroupVectorMerge::ReadGroupVectorMerge(const std::vector*>&)’ at ./libmaus2/bambam/ReadGroup.hpp:177:14: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1913:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1913 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1914 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1915 | __comp); | ~~~~~~~ In function ‘constexpr void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = libmaus2::bambam::ReadGroupVectorMerge::ReadGroupIndexComparator]’, inlined from ‘constexpr void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = libmaus2::bambam::ReadGroupVectorMerge::ReadGroupIndexComparator]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1916:31, inlined from ‘constexpr void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator*, vector > >; _Compare = libmaus2::bambam::ReadGroupVectorMerge::ReadGroupIndexComparator]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:4849:18, inlined from ‘libmaus2::bambam::ReadGroupVectorMerge::ReadGroupVectorMerge(const std::vector*>&)’ at ./libmaus2/bambam/ReadGroup.hpp:177:14: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1821:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1821 | std::__insertion_sort(__first, __first + __threshold, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1826:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1826 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h: In function ‘constexpr std::pair<_FIter, _FIter> std::__equal_range(_ForwardIterator, _ForwardIterator, const _Tp&, _Compare) [with _ForwardIterator = __gnu_cxx::__normal_iterator >; _Tp = libmaus2::bambam::Chromosome; _Compare = libmaus2::bambam::ChromosomeVectorMerge::ChromosomeIndexComparator]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:2076:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2076 | __equal_range(_ForwardIterator __first, _ForwardIterator __last, | ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:2076:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In function ‘constexpr std::pair<_FIter, _FIter> std::equal_range(_FIter, _FIter, const _Tp&, _Compare) [with _FIter = __gnu_cxx::__normal_iterator >; _Tp = libmaus2::bambam::Chromosome; _Compare = libmaus2::bambam::ChromosomeVectorMerge::ChromosomeIndexComparator]’, inlined from ‘libmaus2::bambam::ChromosomeVectorMerge::ChromosomeVectorMerge(const std::vector*>&, bool)’ at ./libmaus2/bambam/ChromosomeVectorMerge.hpp:161:55: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:2180:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2180 | return std::__equal_range(__first, __last, __val, __comp); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘constexpr std::pair<_FIter, _FIter> std::equal_range(_FIter, _FIter, const _Tp&, _Compare) [with _FIter = __gnu_cxx::__normal_iterator >; _Tp = libmaus2::bambam::Chromosome; _Compare = libmaus2::bambam::ChromosomeVectorMerge::ChromosomeIndexComparator]’, inlined from ‘libmaus2::bambam::ChromosomeVectorMerge::ChromosomeVectorMerge(const std::vector*>&, bool)’ at ./libmaus2/bambam/ChromosomeVectorMerge.hpp:165:55: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:2180:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2180 | return std::__equal_range(__first, __last, __val, __comp); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/16/map:65: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::set; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘libmaus2::bambam::ChromosomeVectorMerge::ChromosomeVectorMerge(const std::vector*>&, bool)’ at ./libmaus2/bambam/ChromosomeVectorMerge.hpp:169:22: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::set; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘libmaus2::bambam::ChromosomeVectorMerge::ChromosomeVectorMerge(const std::vector*>&, bool)’ at ./libmaus2/bambam/ChromosomeVectorMerge.hpp:170:23: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::set; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘libmaus2::bambam::ChromosomeVectorMerge::ChromosomeVectorMerge(const std::vector*>&, bool)’ at ./libmaus2/bambam/ChromosomeVectorMerge.hpp:204:19: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::set; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘libmaus2::bambam::ChromosomeVectorMerge::ChromosomeVectorMerge(const std::vector*>&, bool)’ at ./libmaus2/bambam/ChromosomeVectorMerge.hpp:204:38: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::set; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘libmaus2::bambam::ChromosomeVectorMerge::ChromosomeVectorMerge(const std::vector*>&, bool)’ at ./libmaus2/bambam/ChromosomeVectorMerge.hpp:206:20: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::set; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘libmaus2::bambam::ChromosomeVectorMerge::ChromosomeVectorMerge(const std::vector*>&, bool)’ at ./libmaus2/bambam/ChromosomeVectorMerge.hpp:206:40: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In function ‘constexpr std::pair<_FIter, _FIter> std::equal_range(_FIter, _FIter, const _Tp&, _Compare) [with _FIter = __gnu_cxx::__normal_iterator >; _Tp = libmaus2::bambam::Chromosome; _Compare = libmaus2::bambam::ChromosomeVectorMerge::ChromosomeIndexComparator]’, inlined from ‘libmaus2::bambam::ChromosomeVectorMerge::ChromosomeVectorMerge(const std::vector*>&, bool)’ at ./libmaus2/bambam/ChromosomeVectorMerge.hpp:249:56: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:2180:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2180 | return std::__equal_range(__first, __last, __val, __comp); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = std::__cxx11::basic_string; _Tp = long long unsigned int; _Compare = std::less >; _Alloc = std::allocator, long long unsigned int> >]’, inlined from ‘libmaus2::bambam::ProgramHeaderLineSet::ProgramHeaderLineSet(const std::string&)’ at ./libmaus2/bambam/ProgramHeaderLineSet.hpp:56:38: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:559:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, long long unsigned int>, std::_Select1st, long long unsigned int> >, std::less >, std::allocator, long long unsigned int> > >::const_iterator’ changed in GCC 7.1 559 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = std::__cxx11::basic_string; _Tp = long long unsigned int; _Compare = std::less >; _Alloc = std::allocator, long long unsigned int> >]’, inlined from ‘libmaus2::bambam::ProgramHeaderLinesMerge::ProgramHeaderLinesMerge(const std::vector*>&)’ at ./libmaus2/bambam/ProgramHeaderLineSet.hpp:397:35: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:559:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, long long unsigned int>, std::_Select1st, long long unsigned int> >, std::less >, std::allocator, long long unsigned int> > >::const_iterator’ changed in GCC 7.1 559 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string; _Tp = long long unsigned int; _Compare = std::less >; _Alloc = std::allocator, long long unsigned int> >]’, inlined from ‘libmaus2::bambam::ProgramHeaderLinesMerge::ProgramHeaderLinesMerge(const std::vector*>&)’ at ./libmaus2/bambam/ProgramHeaderLineSet.hpp:412:68: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, long long unsigned int>, std::_Select1st, long long unsigned int> >, std::less >, std::allocator, long long unsigned int> > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string; _Tp = long long unsigned int; _Compare = std::less >; _Alloc = std::allocator, long long unsigned int> >]’, inlined from ‘libmaus2::bambam::ProgramHeaderLinesMerge::ProgramHeaderLinesMerge(const std::vector*>&)’ at ./libmaus2/bambam/ProgramHeaderLineSet.hpp:475:21: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, long long unsigned int>, std::_Select1st, long long unsigned int> >, std::less >, std::allocator, long long unsigned int> > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In static member function ‘static libmaus2::hashing::ConstantStringHash::shared_ptr_type libmaus2::hashing::ConstantStringHash::constructShared(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]’, inlined from ‘void libmaus2::bambam::BamHeader::initSetup()’ at ./libmaus2/bambam/BamHeader.hpp:965:67: ./libmaus2/hashing/ConstantStringHash.hpp:86:59: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 86 | shared_ptr_type s(new this_type(ita,ite,maxn)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h: In function ‘constexpr void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Distance = int; _Tp = pair; _Compare = less]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:229:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 229 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h: In function ‘constexpr void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Size = int; _Compare = less]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1884:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1884 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1884:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 In function ‘constexpr void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = less]’, inlined from ‘constexpr _RandomAccessIterator std::__unguarded_partition_pivot(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = less]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1863:34, inlined from ‘constexpr void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Size = int; _Compare = less]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1897:38: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:94:27: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 94 | std::iter_swap(__result, __b); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:96:27: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 96 | std::iter_swap(__result, __c); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:98:27: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 98 | std::iter_swap(__result, __a); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h: In function ‘constexpr void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Size = int; _Compare = less]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1898:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1898 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘constexpr void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = less]’, inlined from ‘constexpr void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator*, vector > >]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:4817:18, inlined from ‘std::vector > libmaus2::bambam::BamIndex::reg2chunks(uint64_t, uint64_t, uint64_t) const’ at ./libmaus2/bambam/BamIndex.hpp:379:14: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1913:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1913 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1914 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1915 | __comp); | ~~~~~~~ In function ‘constexpr void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = less]’, inlined from ‘constexpr void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = less]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1916:31, inlined from ‘constexpr void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator*, vector > >]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:4817:18, inlined from ‘std::vector > libmaus2::bambam::BamIndex::reg2chunks(uint64_t, uint64_t, uint64_t) const’ at ./libmaus2/bambam/BamIndex.hpp:379:14: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1821:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1821 | std::__insertion_sort(__first, __first + __threshold, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1826:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1826 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testbammergecoordinate test/testbammergecoordinate-testbammergecoordinate.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testbammergecoordinate test/testbammergecoordinate-testbammergecoordinate.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testbammergecollate-testbammergecollate.o `test -f 'test/testbammergecollate.cpp' || echo './'`test/testbammergecollate.cpp In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/bambam/BamAuxFilterVector.hpp:22, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:27, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testbammergecollate.cpp:19: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/bambam/CigarStringParser.hpp:25, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ In file included from ./libmaus2/bambam/BamAlignmentDecoder.hpp:24, from ./libmaus2/bambam/BamDecoder.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:23: ./libmaus2/bambam/BamHeaderLowMem.hpp: In member function ‘void libmaus2::bambam::BamHeaderLowMem::setupFromText()’: ./libmaus2/bambam/BamHeaderLowMem.hpp:366:58: warning: variable ‘ln’ set but not used [-Wunused-but-set-variable=] 366 | uint64_t ln = 0; | ^~ In file included from /usr/arm-linux-gnueabihf/include/c++/16/algorithm:63, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h: In function ‘constexpr void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = less]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1884:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1884 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1884:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1898:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1898 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h: In function ‘constexpr void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = less]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1770:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1770 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1770:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/16/map:64, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:51: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h:3250:7: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 3250 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘constexpr void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = less]’, inlined from ‘constexpr void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:4817:18, inlined from ‘void libmaus2::trie::LinearHashTrie<_char_type, _id_type>::fillDepthParent() [with _char_type = char; _id_type = unsigned int]’ at ./libmaus2/trie/TrieState.hpp:261:14: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1913:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1913 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1914 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1915 | __comp); | ~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:61: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h: In function ‘constexpr void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = libmaus2::bambam::BamAlignmentHeapComparator]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:141:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 141 | __push_heap(_RandomAccessIterator __first, | ^~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h: In member function ‘std::pair::rebind<_Val>::other>::pointer>::_Base_ptr, typename std::__rb_tree::_Node_traits<_Val, typename __gnu_cxx::__alloc_traits::rebind<_Val>::other>::pointer>::_Base_ptr> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(const_iterator, const key_type&) [with _Key = std::__cxx11::basic_string; _Val = std::pair, long long unsigned int>; _KeyOfValue = std::_Select1st, long long unsigned int> >; _Compare = std::less >; _Alloc = std::allocator, long long unsigned int> >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h:2952:5: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, long long unsigned int>, std::_Select1st, long long unsigned int> >, std::less >, std::allocator, long long unsigned int> > >::const_iterator’ changed in GCC 7.1 2952 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::allocator >&>, std::tuple<>}; _Key = std::__cxx11::basic_string; _Val = std::pair, long long unsigned int>; _KeyOfValue = std::_Select1st, long long unsigned int> >; _Compare = std::less >; _Alloc = std::allocator, long long unsigned int> >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h:3250:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, long long unsigned int>, std::_Select1st, long long unsigned int> >, std::less >, std::allocator, long long unsigned int> > >::const_iterator’ changed in GCC 7.1 3250 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::allocator >&&>, std::tuple<>}; _Key = std::__cxx11::basic_string; _Val = std::pair, long long unsigned int>; _KeyOfValue = std::_Select1st, long long unsigned int> >; _Compare = std::less >; _Alloc = std::allocator, long long unsigned int> >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h:3250:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, long long unsigned int>, std::_Select1st, long long unsigned int> >, std::less >, std::allocator, long long unsigned int> > >::const_iterator’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h: In function ‘constexpr void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = libmaus2::bambam::BamAlignmentHeapComparator]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:229:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 229 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In file included from ./libmaus2/bambam/BamHeader.hpp:36, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:30: ./libmaus2/hashing/ConstantStringHash.hpp: In constructor ‘libmaus2::hashing::ConstantStringHash::ConstantStringHash(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]’: ./libmaus2/hashing/ConstantStringHash.hpp:96:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 96 | ConstantStringHash(iterator ita, iterator ite, uint64_t const maxn = 64*1024) | ^~~~~~~~~~~~~~~~~~ ./libmaus2/hashing/ConstantStringHash.hpp:96:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h: In function ‘constexpr void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = libmaus2::bambam::BamMergeCoordinateHeapComparator]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:229:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 229 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/16/string:55, from /usr/arm-linux-gnueabihf/include/c++/16/bits/locale_classes.h:43, from /usr/arm-linux-gnueabihf/include/c++/16/bits/ios_base.h:43, from /usr/arm-linux-gnueabihf/include/c++/16/ios:46, from /usr/arm-linux-gnueabihf/include/c++/16/bits/ostream.h:43, from /usr/arm-linux-gnueabihf/include/c++/16/ostream:42, from ./libmaus2/bambam/AlignmentValidity.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:23: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algobase.h: In function ‘constexpr void std::iter_swap(_ForwardIterator1, _ForwardIterator2) [with _ForwardIterator1 = __gnu_cxx::__normal_iterator*, vector > >; _ForwardIterator2 = __gnu_cxx::__normal_iterator*, vector > >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algobase.h:154:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 154 | iter_swap(_ForwardIterator1 __a, _ForwardIterator2 __b) | ^~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algobase.h:154:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h: In function ‘constexpr void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Distance = int; _Tp = pair; _Compare = libmaus2::bambam::ReadGroupVectorMerge::ReadGroupIndexComparator]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:229:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 229 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h: In function ‘constexpr void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Size = int; _Compare = libmaus2::bambam::ReadGroupVectorMerge::ReadGroupIndexComparator]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1884:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1884 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1884:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 In function ‘constexpr void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = libmaus2::bambam::ReadGroupVectorMerge::ReadGroupIndexComparator]’, inlined from ‘constexpr _RandomAccessIterator std::__unguarded_partition_pivot(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = libmaus2::bambam::ReadGroupVectorMerge::ReadGroupIndexComparator]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1863:34, inlined from ‘constexpr void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Size = int; _Compare = libmaus2::bambam::ReadGroupVectorMerge::ReadGroupIndexComparator]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1897:38: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:94:27: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 94 | std::iter_swap(__result, __b); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:96:27: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 96 | std::iter_swap(__result, __c); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:98:27: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 98 | std::iter_swap(__result, __a); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h: In function ‘constexpr void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Size = int; _Compare = libmaus2::bambam::ReadGroupVectorMerge::ReadGroupIndexComparator]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1898:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1898 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h: In function ‘constexpr void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = libmaus2::bambam::ReadGroupVectorMerge::ReadGroupIndexComparator]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1770:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1770 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1770:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 In function ‘constexpr void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = libmaus2::bambam::ReadGroupVectorMerge::ReadGroupIndexComparator]’, inlined from ‘constexpr void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator*, vector > >; _Compare = libmaus2::bambam::ReadGroupVectorMerge::ReadGroupIndexComparator]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:4849:18, inlined from ‘libmaus2::bambam::ReadGroupVectorMerge::ReadGroupVectorMerge(const std::vector*>&)’ at ./libmaus2/bambam/ReadGroup.hpp:177:14: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1913:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1913 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1914 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1915 | __comp); | ~~~~~~~ In function ‘constexpr void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = libmaus2::bambam::ReadGroupVectorMerge::ReadGroupIndexComparator]’, inlined from ‘constexpr void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = libmaus2::bambam::ReadGroupVectorMerge::ReadGroupIndexComparator]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1916:31, inlined from ‘constexpr void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator*, vector > >; _Compare = libmaus2::bambam::ReadGroupVectorMerge::ReadGroupIndexComparator]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:4849:18, inlined from ‘libmaus2::bambam::ReadGroupVectorMerge::ReadGroupVectorMerge(const std::vector*>&)’ at ./libmaus2/bambam/ReadGroup.hpp:177:14: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1821:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1821 | std::__insertion_sort(__first, __first + __threshold, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1826:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1826 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h: In function ‘constexpr std::pair std::__equal_range(_ForwardIterator, _ForwardIterator, const _Tp&, _Compare) [with _ForwardIterator = __gnu_cxx::__normal_iterator >; _Tp = libmaus2::bambam::Chromosome; _Compare = libmaus2::bambam::ChromosomeVectorMerge::ChromosomeIndexComparator]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:2076:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2076 | __equal_range(_ForwardIterator __first, _ForwardIterator __last, | ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:2076:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In function ‘constexpr std::pair std::equal_range(_FIter, _FIter, const _Tp&, _Compare) [with _FIter = __gnu_cxx::__normal_iterator >; _Tp = libmaus2::bambam::Chromosome; _Compare = libmaus2::bambam::ChromosomeVectorMerge::ChromosomeIndexComparator]’, inlined from ‘libmaus2::bambam::ChromosomeVectorMerge::ChromosomeVectorMerge(const std::vector*>&, bool)’ at ./libmaus2/bambam/ChromosomeVectorMerge.hpp:161:55: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:2180:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2180 | return std::__equal_range(__first, __last, __val, __comp); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘constexpr std::pair std::equal_range(_FIter, _FIter, const _Tp&, _Compare) [with _FIter = __gnu_cxx::__normal_iterator >; _Tp = libmaus2::bambam::Chromosome; _Compare = libmaus2::bambam::ChromosomeVectorMerge::ChromosomeIndexComparator]’, inlined from ‘libmaus2::bambam::ChromosomeVectorMerge::ChromosomeVectorMerge(const std::vector*>&, bool)’ at ./libmaus2/bambam/ChromosomeVectorMerge.hpp:165:55: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:2180:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2180 | return std::__equal_range(__first, __last, __val, __comp); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/16/map:65: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::set; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘libmaus2::bambam::ChromosomeVectorMerge::ChromosomeVectorMerge(const std::vector*>&, bool)’ at ./libmaus2/bambam/ChromosomeVectorMerge.hpp:169:22: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::set; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘libmaus2::bambam::ChromosomeVectorMerge::ChromosomeVectorMerge(const std::vector*>&, bool)’ at ./libmaus2/bambam/ChromosomeVectorMerge.hpp:170:23: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::set; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘libmaus2::bambam::ChromosomeVectorMerge::ChromosomeVectorMerge(const std::vector*>&, bool)’ at ./libmaus2/bambam/ChromosomeVectorMerge.hpp:204:19: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::set; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘libmaus2::bambam::ChromosomeVectorMerge::ChromosomeVectorMerge(const std::vector*>&, bool)’ at ./libmaus2/bambam/ChromosomeVectorMerge.hpp:204:38: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::set; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘libmaus2::bambam::ChromosomeVectorMerge::ChromosomeVectorMerge(const std::vector*>&, bool)’ at ./libmaus2/bambam/ChromosomeVectorMerge.hpp:206:20: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::set; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘libmaus2::bambam::ChromosomeVectorMerge::ChromosomeVectorMerge(const std::vector*>&, bool)’ at ./libmaus2/bambam/ChromosomeVectorMerge.hpp:206:40: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In function ‘constexpr std::pair std::equal_range(_FIter, _FIter, const _Tp&, _Compare) [with _FIter = __gnu_cxx::__normal_iterator >; _Tp = libmaus2::bambam::Chromosome; _Compare = libmaus2::bambam::ChromosomeVectorMerge::ChromosomeIndexComparator]’, inlined from ‘libmaus2::bambam::ChromosomeVectorMerge::ChromosomeVectorMerge(const std::vector*>&, bool)’ at ./libmaus2/bambam/ChromosomeVectorMerge.hpp:249:56: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:2180:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2180 | return std::__equal_range(__first, __last, __val, __comp); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = std::__cxx11::basic_string; _Tp = long long unsigned int; _Compare = std::less >; _Alloc = std::allocator, long long unsigned int> >]’, inlined from ‘libmaus2::bambam::ProgramHeaderLineSet::ProgramHeaderLineSet(const std::string&)’ at ./libmaus2/bambam/ProgramHeaderLineSet.hpp:56:38: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:559:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, long long unsigned int>, std::_Select1st, long long unsigned int> >, std::less >, std::allocator, long long unsigned int> > >::const_iterator’ changed in GCC 7.1 559 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = std::__cxx11::basic_string; _Tp = long long unsigned int; _Compare = std::less >; _Alloc = std::allocator, long long unsigned int> >]’, inlined from ‘libmaus2::bambam::ProgramHeaderLinesMerge::ProgramHeaderLinesMerge(const std::vector*>&)’ at ./libmaus2/bambam/ProgramHeaderLineSet.hpp:397:35: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:559:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, long long unsigned int>, std::_Select1st, long long unsigned int> >, std::less >, std::allocator, long long unsigned int> > >::const_iterator’ changed in GCC 7.1 559 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string; _Tp = long long unsigned int; _Compare = std::less >; _Alloc = std::allocator, long long unsigned int> >]’, inlined from ‘libmaus2::bambam::ProgramHeaderLinesMerge::ProgramHeaderLinesMerge(const std::vector*>&)’ at ./libmaus2/bambam/ProgramHeaderLineSet.hpp:412:68: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, long long unsigned int>, std::_Select1st, long long unsigned int> >, std::less >, std::allocator, long long unsigned int> > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string; _Tp = long long unsigned int; _Compare = std::less >; _Alloc = std::allocator, long long unsigned int> >]’, inlined from ‘libmaus2::bambam::ProgramHeaderLinesMerge::ProgramHeaderLinesMerge(const std::vector*>&)’ at ./libmaus2/bambam/ProgramHeaderLineSet.hpp:475:21: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, long long unsigned int>, std::_Select1st, long long unsigned int> >, std::less >, std::allocator, long long unsigned int> > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In static member function ‘static libmaus2::hashing::ConstantStringHash::shared_ptr_type libmaus2::hashing::ConstantStringHash::constructShared(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]’, inlined from ‘void libmaus2::bambam::BamHeader::initSetup()’ at ./libmaus2/bambam/BamHeader.hpp:965:67: ./libmaus2/hashing/ConstantStringHash.hpp:86:59: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 86 | shared_ptr_type s(new this_type(ita,ite,maxn)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h: In function ‘constexpr void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Distance = int; _Tp = pair; _Compare = less]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:229:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 229 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h: In function ‘constexpr void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Size = int; _Compare = less]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1884:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1884 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1884:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 In function ‘constexpr void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = less]’, inlined from ‘constexpr _RandomAccessIterator std::__unguarded_partition_pivot(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = less]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1863:34, inlined from ‘constexpr void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Size = int; _Compare = less]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1897:38: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:94:27: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 94 | std::iter_swap(__result, __b); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:96:27: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 96 | std::iter_swap(__result, __c); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:98:27: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 98 | std::iter_swap(__result, __a); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h: In function ‘constexpr void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Size = int; _Compare = less]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1898:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1898 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘constexpr void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = less]’, inlined from ‘constexpr void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator*, vector > >]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:4817:18, inlined from ‘std::vector > libmaus2::bambam::BamIndex::reg2chunks(uint64_t, uint64_t, uint64_t) const’ at ./libmaus2/bambam/BamIndex.hpp:379:14: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1913:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1913 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1914 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1915 | __comp); | ~~~~~~~ In function ‘constexpr void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = less]’, inlined from ‘constexpr void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = less]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1916:31, inlined from ‘constexpr void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator*, vector > >]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:4817:18, inlined from ‘std::vector > libmaus2::bambam::BamIndex::reg2chunks(uint64_t, uint64_t, uint64_t) const’ at ./libmaus2/bambam/BamIndex.hpp:379:14: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1821:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1821 | std::__insertion_sort(__first, __first + __threshold, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1826:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1826 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testbammergecollate test/testbammergecollate-testbammergecollate.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testbammergecollate test/testbammergecollate-testbammergecollate.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testbammergequeryname-testbammergequeryname.o `test -f 'test/testbammergequeryname.cpp' || echo './'`test/testbammergequeryname.cpp In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/bambam/BamAuxFilterVector.hpp:22, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:27, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamCatHeader.hpp:22, from ./libmaus2/bambam/BamMergeQueryName.hpp:22, from test/testbammergequeryname.cpp:20: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/bambam/CigarStringParser.hpp:25, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ In file included from ./libmaus2/bambam/BamAlignmentDecoder.hpp:24, from ./libmaus2/bambam/BamDecoder.hpp:22, from ./libmaus2/bambam/BamCatHeader.hpp:23: ./libmaus2/bambam/BamHeaderLowMem.hpp: In member function ‘void libmaus2::bambam::BamHeaderLowMem::setupFromText()’: ./libmaus2/bambam/BamHeaderLowMem.hpp:366:58: warning: variable ‘ln’ set but not used [-Wunused-but-set-variable=] 366 | uint64_t ln = 0; | ^~ In file included from /usr/arm-linux-gnueabihf/include/c++/16/algorithm:63, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/util/StringSerialisation.hpp:30, from ./libmaus2/util/ArgInfo.hpp:31, from test/testbammergequeryname.cpp:19: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h: In function ‘constexpr void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = less]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1884:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1884 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1884:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1898:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1898 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h: In function ‘constexpr void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = less]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1770:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1770 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1770:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/16/map:64, from ./libmaus2/util/ArgInfo.hpp:23: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h:3250:7: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 3250 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘constexpr void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = less]’, inlined from ‘constexpr void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:4817:18, inlined from ‘void libmaus2::trie::LinearHashTrie<_char_type, _id_type>::fillDepthParent() [with _char_type = char; _id_type = unsigned int]’ at ./libmaus2/trie/TrieState.hpp:261:14: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1913:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1913 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1914 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1915 | __comp); | ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h: In member function ‘std::pair::rebind<_Val>::other>::pointer>::_Base_ptr, typename std::__rb_tree::_Node_traits<_Val, typename __gnu_cxx::__alloc_traits::rebind<_Val>::other>::pointer>::_Base_ptr> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(const_iterator, const key_type&) [with _Key = std::__cxx11::basic_string; _Val = std::pair, long long unsigned int>; _KeyOfValue = std::_Select1st, long long unsigned int> >; _Compare = std::less >; _Alloc = std::allocator, long long unsigned int> >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h:2952:5: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, long long unsigned int>, std::_Select1st, long long unsigned int> >, std::less >, std::allocator, long long unsigned int> > >::const_iterator’ changed in GCC 7.1 2952 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::allocator >&>, std::tuple<>}; _Key = std::__cxx11::basic_string; _Val = std::pair, long long unsigned int>; _KeyOfValue = std::_Select1st, long long unsigned int> >; _Compare = std::less >; _Alloc = std::allocator, long long unsigned int> >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h:3250:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, long long unsigned int>, std::_Select1st, long long unsigned int> >, std::less >, std::allocator, long long unsigned int> > >::const_iterator’ changed in GCC 7.1 3250 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::allocator >&&>, std::tuple<>}; _Key = std::__cxx11::basic_string; _Val = std::pair, long long unsigned int>; _KeyOfValue = std::_Select1st, long long unsigned int> >; _Compare = std::less >; _Alloc = std::allocator, long long unsigned int> >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h:3250:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, long long unsigned int>, std::_Select1st, long long unsigned int> >, std::less >, std::allocator, long long unsigned int> > >::const_iterator’ changed in GCC 7.1 In file included from ./libmaus2/bambam/BamHeader.hpp:36, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:30: ./libmaus2/hashing/ConstantStringHash.hpp: In constructor ‘libmaus2::hashing::ConstantStringHash::ConstantStringHash(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]’: ./libmaus2/hashing/ConstantStringHash.hpp:96:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 96 | ConstantStringHash(iterator ita, iterator ite, uint64_t const maxn = 64*1024) | ^~~~~~~~~~~~~~~~~~ ./libmaus2/hashing/ConstantStringHash.hpp:96:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/16/string:55, from ./libmaus2/util/ArgInfo.hpp:22: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algobase.h: In function ‘constexpr void std::iter_swap(_ForwardIterator1, _ForwardIterator2) [with _ForwardIterator1 = __gnu_cxx::__normal_iterator*, vector > >; _ForwardIterator2 = __gnu_cxx::__normal_iterator*, vector > >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algobase.h:154:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 154 | iter_swap(_ForwardIterator1 __a, _ForwardIterator2 __b) | ^~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algobase.h:154:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:61: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h: In function ‘constexpr void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = libmaus2::bambam::BamMergeQueyNameHeapComparator]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:141:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 141 | __push_heap(_RandomAccessIterator __first, | ^~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h: In function ‘constexpr void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = libmaus2::bambam::BamMergeQueyNameHeapComparator]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:229:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 229 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h: In function ‘constexpr void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Distance = int; _Tp = pair; _Compare = libmaus2::bambam::ReadGroupVectorMerge::ReadGroupIndexComparator]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:229:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h: In function ‘constexpr void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Size = int; _Compare = libmaus2::bambam::ReadGroupVectorMerge::ReadGroupIndexComparator]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1884:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1884 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1884:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 In function ‘constexpr void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = libmaus2::bambam::ReadGroupVectorMerge::ReadGroupIndexComparator]’, inlined from ‘constexpr _RandomAccessIterator std::__unguarded_partition_pivot(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = libmaus2::bambam::ReadGroupVectorMerge::ReadGroupIndexComparator]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1863:34, inlined from ‘constexpr void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Size = int; _Compare = libmaus2::bambam::ReadGroupVectorMerge::ReadGroupIndexComparator]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1897:38: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:94:27: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 94 | std::iter_swap(__result, __b); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:96:27: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 96 | std::iter_swap(__result, __c); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:98:27: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 98 | std::iter_swap(__result, __a); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h: In function ‘constexpr void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Size = int; _Compare = libmaus2::bambam::ReadGroupVectorMerge::ReadGroupIndexComparator]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1898:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1898 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h: In function ‘constexpr void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = libmaus2::bambam::ReadGroupVectorMerge::ReadGroupIndexComparator]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1770:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1770 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1770:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 In function ‘constexpr void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = libmaus2::bambam::ReadGroupVectorMerge::ReadGroupIndexComparator]’, inlined from ‘constexpr void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator*, vector > >; _Compare = libmaus2::bambam::ReadGroupVectorMerge::ReadGroupIndexComparator]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:4849:18, inlined from ‘libmaus2::bambam::ReadGroupVectorMerge::ReadGroupVectorMerge(const std::vector*>&)’ at ./libmaus2/bambam/ReadGroup.hpp:177:14: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1913:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1913 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1914 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1915 | __comp); | ~~~~~~~ In function ‘constexpr void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = libmaus2::bambam::ReadGroupVectorMerge::ReadGroupIndexComparator]’, inlined from ‘constexpr void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = libmaus2::bambam::ReadGroupVectorMerge::ReadGroupIndexComparator]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1916:31, inlined from ‘constexpr void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator*, vector > >; _Compare = libmaus2::bambam::ReadGroupVectorMerge::ReadGroupIndexComparator]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:4849:18, inlined from ‘libmaus2::bambam::ReadGroupVectorMerge::ReadGroupVectorMerge(const std::vector*>&)’ at ./libmaus2/bambam/ReadGroup.hpp:177:14: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1821:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1821 | std::__insertion_sort(__first, __first + __threshold, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1826:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1826 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h: In function ‘constexpr std::pair<_FIter, _FIter> std::__equal_range(_ForwardIterator, _ForwardIterator, const _Tp&, _Compare) [with _ForwardIterator = __gnu_cxx::__normal_iterator >; _Tp = libmaus2::bambam::Chromosome; _Compare = libmaus2::bambam::ChromosomeVectorMerge::ChromosomeIndexComparator]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:2076:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2076 | __equal_range(_ForwardIterator __first, _ForwardIterator __last, | ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:2076:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In function ‘constexpr std::pair<_FIter, _FIter> std::equal_range(_FIter, _FIter, const _Tp&, _Compare) [with _FIter = __gnu_cxx::__normal_iterator >; _Tp = libmaus2::bambam::Chromosome; _Compare = libmaus2::bambam::ChromosomeVectorMerge::ChromosomeIndexComparator]’, inlined from ‘libmaus2::bambam::ChromosomeVectorMerge::ChromosomeVectorMerge(const std::vector*>&, bool)’ at ./libmaus2/bambam/ChromosomeVectorMerge.hpp:161:55: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:2180:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2180 | return std::__equal_range(__first, __last, __val, __comp); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘constexpr std::pair<_FIter, _FIter> std::equal_range(_FIter, _FIter, const _Tp&, _Compare) [with _FIter = __gnu_cxx::__normal_iterator >; _Tp = libmaus2::bambam::Chromosome; _Compare = libmaus2::bambam::ChromosomeVectorMerge::ChromosomeIndexComparator]’, inlined from ‘libmaus2::bambam::ChromosomeVectorMerge::ChromosomeVectorMerge(const std::vector*>&, bool)’ at ./libmaus2/bambam/ChromosomeVectorMerge.hpp:165:55: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:2180:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2180 | return std::__equal_range(__first, __last, __val, __comp); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/16/map:65: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::set; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘libmaus2::bambam::ChromosomeVectorMerge::ChromosomeVectorMerge(const std::vector*>&, bool)’ at ./libmaus2/bambam/ChromosomeVectorMerge.hpp:169:22: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::set; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘libmaus2::bambam::ChromosomeVectorMerge::ChromosomeVectorMerge(const std::vector*>&, bool)’ at ./libmaus2/bambam/ChromosomeVectorMerge.hpp:170:23: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::set; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘libmaus2::bambam::ChromosomeVectorMerge::ChromosomeVectorMerge(const std::vector*>&, bool)’ at ./libmaus2/bambam/ChromosomeVectorMerge.hpp:204:19: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::set; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘libmaus2::bambam::ChromosomeVectorMerge::ChromosomeVectorMerge(const std::vector*>&, bool)’ at ./libmaus2/bambam/ChromosomeVectorMerge.hpp:204:38: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::set; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘libmaus2::bambam::ChromosomeVectorMerge::ChromosomeVectorMerge(const std::vector*>&, bool)’ at ./libmaus2/bambam/ChromosomeVectorMerge.hpp:206:20: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::set; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘libmaus2::bambam::ChromosomeVectorMerge::ChromosomeVectorMerge(const std::vector*>&, bool)’ at ./libmaus2/bambam/ChromosomeVectorMerge.hpp:206:40: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In function ‘constexpr std::pair<_FIter, _FIter> std::equal_range(_FIter, _FIter, const _Tp&, _Compare) [with _FIter = __gnu_cxx::__normal_iterator >; _Tp = libmaus2::bambam::Chromosome; _Compare = libmaus2::bambam::ChromosomeVectorMerge::ChromosomeIndexComparator]’, inlined from ‘libmaus2::bambam::ChromosomeVectorMerge::ChromosomeVectorMerge(const std::vector*>&, bool)’ at ./libmaus2/bambam/ChromosomeVectorMerge.hpp:249:56: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:2180:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2180 | return std::__equal_range(__first, __last, __val, __comp); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = std::__cxx11::basic_string; _Tp = long long unsigned int; _Compare = std::less >; _Alloc = std::allocator, long long unsigned int> >]’, inlined from ‘libmaus2::bambam::ProgramHeaderLineSet::ProgramHeaderLineSet(const std::string&)’ at ./libmaus2/bambam/ProgramHeaderLineSet.hpp:56:38: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:559:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, long long unsigned int>, std::_Select1st, long long unsigned int> >, std::less >, std::allocator, long long unsigned int> > >::const_iterator’ changed in GCC 7.1 559 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = std::__cxx11::basic_string; _Tp = long long unsigned int; _Compare = std::less >; _Alloc = std::allocator, long long unsigned int> >]’, inlined from ‘libmaus2::bambam::ProgramHeaderLinesMerge::ProgramHeaderLinesMerge(const std::vector*>&)’ at ./libmaus2/bambam/ProgramHeaderLineSet.hpp:397:35: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:559:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, long long unsigned int>, std::_Select1st, long long unsigned int> >, std::less >, std::allocator, long long unsigned int> > >::const_iterator’ changed in GCC 7.1 559 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string; _Tp = long long unsigned int; _Compare = std::less >; _Alloc = std::allocator, long long unsigned int> >]’, inlined from ‘libmaus2::bambam::ProgramHeaderLinesMerge::ProgramHeaderLinesMerge(const std::vector*>&)’ at ./libmaus2/bambam/ProgramHeaderLineSet.hpp:412:68: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, long long unsigned int>, std::_Select1st, long long unsigned int> >, std::less >, std::allocator, long long unsigned int> > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string; _Tp = long long unsigned int; _Compare = std::less >; _Alloc = std::allocator, long long unsigned int> >]’, inlined from ‘libmaus2::bambam::ProgramHeaderLinesMerge::ProgramHeaderLinesMerge(const std::vector*>&)’ at ./libmaus2/bambam/ProgramHeaderLineSet.hpp:475:21: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, long long unsigned int>, std::_Select1st, long long unsigned int> >, std::less >, std::allocator, long long unsigned int> > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In static member function ‘static libmaus2::hashing::ConstantStringHash::shared_ptr_type libmaus2::hashing::ConstantStringHash::constructShared(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]’, inlined from ‘void libmaus2::bambam::BamHeader::initSetup()’ at ./libmaus2/bambam/BamHeader.hpp:965:67: ./libmaus2/hashing/ConstantStringHash.hpp:86:59: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 86 | shared_ptr_type s(new this_type(ita,ite,maxn)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h: In function ‘constexpr void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Distance = int; _Tp = pair; _Compare = less]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:229:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 229 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h: In function ‘constexpr void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Size = int; _Compare = less]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1884:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1884 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1884:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 In function ‘constexpr void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = less]’, inlined from ‘constexpr _RandomAccessIterator std::__unguarded_partition_pivot(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = less]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1863:34, inlined from ‘constexpr void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Size = int; _Compare = less]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1897:38: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:94:27: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 94 | std::iter_swap(__result, __b); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:96:27: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 96 | std::iter_swap(__result, __c); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:98:27: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 98 | std::iter_swap(__result, __a); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h: In function ‘constexpr void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Size = int; _Compare = less]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1898:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1898 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘constexpr void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = less]’, inlined from ‘constexpr void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator*, vector > >]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:4817:18, inlined from ‘std::vector > libmaus2::bambam::BamIndex::reg2chunks(uint64_t, uint64_t, uint64_t) const’ at ./libmaus2/bambam/BamIndex.hpp:379:14: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1913:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1913 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1914 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1915 | __comp); | ~~~~~~~ In function ‘constexpr void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = less]’, inlined from ‘constexpr void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = less]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1916:31, inlined from ‘constexpr void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator*, vector > >]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:4817:18, inlined from ‘std::vector > libmaus2::bambam::BamIndex::reg2chunks(uint64_t, uint64_t, uint64_t) const’ at ./libmaus2/bambam/BamIndex.hpp:379:14: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1821:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1821 | std::__insertion_sort(__first, __first + __threshold, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1826:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1826 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testbammergequeryname test/testbammergequeryname-testbammergequeryname.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testbammergequeryname test/testbammergequeryname-testbammergequeryname.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testbamcat-testbamcat.o `test -f 'test/testbamcat.cpp' || echo './'`test/testbamcat.cpp In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/bambam/BamAuxFilterVector.hpp:22, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:27, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamCatHeader.hpp:22, from ./libmaus2/bambam/BamCat.hpp:22, from test/testbamcat.cpp:20: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/bambam/CigarStringParser.hpp:25, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ In file included from ./libmaus2/bambam/BamAlignmentDecoder.hpp:24, from ./libmaus2/bambam/BamDecoder.hpp:22, from ./libmaus2/bambam/BamCatHeader.hpp:23: ./libmaus2/bambam/BamHeaderLowMem.hpp: In member function ‘void libmaus2::bambam::BamHeaderLowMem::setupFromText()’: ./libmaus2/bambam/BamHeaderLowMem.hpp:366:58: warning: variable ‘ln’ set but not used [-Wunused-but-set-variable=] 366 | uint64_t ln = 0; | ^~ In file included from /usr/arm-linux-gnueabihf/include/c++/16/algorithm:63, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/util/StringSerialisation.hpp:30, from ./libmaus2/util/ArgInfo.hpp:31, from test/testbamcat.cpp:19: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h: In function ‘constexpr void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = less]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1884:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1884 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1884:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1898:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1898 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h: In function ‘constexpr void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = less]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1770:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1770 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1770:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/16/map:64, from ./libmaus2/util/ArgInfo.hpp:23: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h:3250:7: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 3250 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘constexpr void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = less]’, inlined from ‘constexpr void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:4817:18, inlined from ‘void libmaus2::trie::LinearHashTrie<_char_type, _id_type>::fillDepthParent() [with _char_type = char; _id_type = unsigned int]’ at ./libmaus2/trie/TrieState.hpp:261:14: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1913:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1913 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1914 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1915 | __comp); | ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h: In member function ‘std::pair::rebind<_Val>::other>::pointer>::_Base_ptr, typename std::__rb_tree::_Node_traits<_Val, typename __gnu_cxx::__alloc_traits::rebind<_Val>::other>::pointer>::_Base_ptr> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(const_iterator, const key_type&) [with _Key = std::__cxx11::basic_string; _Val = std::pair, long long unsigned int>; _KeyOfValue = std::_Select1st, long long unsigned int> >; _Compare = std::less >; _Alloc = std::allocator, long long unsigned int> >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h:2952:5: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, long long unsigned int>, std::_Select1st, long long unsigned int> >, std::less >, std::allocator, long long unsigned int> > >::const_iterator’ changed in GCC 7.1 2952 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::allocator >&>, std::tuple<>}; _Key = std::__cxx11::basic_string; _Val = std::pair, long long unsigned int>; _KeyOfValue = std::_Select1st, long long unsigned int> >; _Compare = std::less >; _Alloc = std::allocator, long long unsigned int> >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h:3250:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, long long unsigned int>, std::_Select1st, long long unsigned int> >, std::less >, std::allocator, long long unsigned int> > >::const_iterator’ changed in GCC 7.1 3250 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::allocator >&&>, std::tuple<>}; _Key = std::__cxx11::basic_string; _Val = std::pair, long long unsigned int>; _KeyOfValue = std::_Select1st, long long unsigned int> >; _Compare = std::less >; _Alloc = std::allocator, long long unsigned int> >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h:3250:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, long long unsigned int>, std::_Select1st, long long unsigned int> >, std::less >, std::allocator, long long unsigned int> > >::const_iterator’ changed in GCC 7.1 In file included from ./libmaus2/bambam/BamHeader.hpp:36, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:30: ./libmaus2/hashing/ConstantStringHash.hpp: In constructor ‘libmaus2::hashing::ConstantStringHash::ConstantStringHash(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]’: ./libmaus2/hashing/ConstantStringHash.hpp:96:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 96 | ConstantStringHash(iterator ita, iterator ite, uint64_t const maxn = 64*1024) | ^~~~~~~~~~~~~~~~~~ ./libmaus2/hashing/ConstantStringHash.hpp:96:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/16/string:55, from ./libmaus2/util/ArgInfo.hpp:22: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algobase.h: In function ‘constexpr void std::iter_swap(_ForwardIterator1, _ForwardIterator2) [with _ForwardIterator1 = __gnu_cxx::__normal_iterator*, vector > >; _ForwardIterator2 = __gnu_cxx::__normal_iterator*, vector > >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algobase.h:154:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 154 | iter_swap(_ForwardIterator1 __a, _ForwardIterator2 __b) | ^~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algobase.h:154:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:61: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h: In function ‘constexpr void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Distance = int; _Tp = pair; _Compare = libmaus2::bambam::ReadGroupVectorMerge::ReadGroupIndexComparator]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:229:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 229 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h: In function ‘constexpr void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Size = int; _Compare = libmaus2::bambam::ReadGroupVectorMerge::ReadGroupIndexComparator]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1884:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1884 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1884:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 In function ‘constexpr void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = libmaus2::bambam::ReadGroupVectorMerge::ReadGroupIndexComparator]’, inlined from ‘constexpr _RandomAccessIterator std::__unguarded_partition_pivot(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = libmaus2::bambam::ReadGroupVectorMerge::ReadGroupIndexComparator]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1863:34, inlined from ‘constexpr void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Size = int; _Compare = libmaus2::bambam::ReadGroupVectorMerge::ReadGroupIndexComparator]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1897:38: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:94:27: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 94 | std::iter_swap(__result, __b); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:96:27: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 96 | std::iter_swap(__result, __c); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:98:27: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 98 | std::iter_swap(__result, __a); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h: In function ‘constexpr void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Size = int; _Compare = libmaus2::bambam::ReadGroupVectorMerge::ReadGroupIndexComparator]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1898:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1898 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h: In function ‘constexpr void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = libmaus2::bambam::ReadGroupVectorMerge::ReadGroupIndexComparator]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1770:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1770 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1770:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 In function ‘constexpr void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = libmaus2::bambam::ReadGroupVectorMerge::ReadGroupIndexComparator]’, inlined from ‘constexpr void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator*, vector > >; _Compare = libmaus2::bambam::ReadGroupVectorMerge::ReadGroupIndexComparator]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:4849:18, inlined from ‘libmaus2::bambam::ReadGroupVectorMerge::ReadGroupVectorMerge(const std::vector*>&)’ at ./libmaus2/bambam/ReadGroup.hpp:177:14: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1913:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1913 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1914 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1915 | __comp); | ~~~~~~~ In function ‘constexpr void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = libmaus2::bambam::ReadGroupVectorMerge::ReadGroupIndexComparator]’, inlined from ‘constexpr void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = libmaus2::bambam::ReadGroupVectorMerge::ReadGroupIndexComparator]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1916:31, inlined from ‘constexpr void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator*, vector > >; _Compare = libmaus2::bambam::ReadGroupVectorMerge::ReadGroupIndexComparator]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:4849:18, inlined from ‘libmaus2::bambam::ReadGroupVectorMerge::ReadGroupVectorMerge(const std::vector*>&)’ at ./libmaus2/bambam/ReadGroup.hpp:177:14: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1821:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1821 | std::__insertion_sort(__first, __first + __threshold, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1826:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1826 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h: In function ‘constexpr std::pair<_FIter, _FIter> std::__equal_range(_ForwardIterator, _ForwardIterator, const _Tp&, _Compare) [with _ForwardIterator = __gnu_cxx::__normal_iterator >; _Tp = libmaus2::bambam::Chromosome; _Compare = libmaus2::bambam::ChromosomeVectorMerge::ChromosomeIndexComparator]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:2076:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2076 | __equal_range(_ForwardIterator __first, _ForwardIterator __last, | ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:2076:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In function ‘constexpr std::pair<_FIter, _FIter> std::equal_range(_FIter, _FIter, const _Tp&, _Compare) [with _FIter = __gnu_cxx::__normal_iterator >; _Tp = libmaus2::bambam::Chromosome; _Compare = libmaus2::bambam::ChromosomeVectorMerge::ChromosomeIndexComparator]’, inlined from ‘libmaus2::bambam::ChromosomeVectorMerge::ChromosomeVectorMerge(const std::vector*>&, bool)’ at ./libmaus2/bambam/ChromosomeVectorMerge.hpp:161:55: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:2180:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2180 | return std::__equal_range(__first, __last, __val, __comp); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘constexpr std::pair<_FIter, _FIter> std::equal_range(_FIter, _FIter, const _Tp&, _Compare) [with _FIter = __gnu_cxx::__normal_iterator >; _Tp = libmaus2::bambam::Chromosome; _Compare = libmaus2::bambam::ChromosomeVectorMerge::ChromosomeIndexComparator]’, inlined from ‘libmaus2::bambam::ChromosomeVectorMerge::ChromosomeVectorMerge(const std::vector*>&, bool)’ at ./libmaus2/bambam/ChromosomeVectorMerge.hpp:165:55: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:2180:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2180 | return std::__equal_range(__first, __last, __val, __comp); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/16/map:65: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::set; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘libmaus2::bambam::ChromosomeVectorMerge::ChromosomeVectorMerge(const std::vector*>&, bool)’ at ./libmaus2/bambam/ChromosomeVectorMerge.hpp:169:22: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::set; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘libmaus2::bambam::ChromosomeVectorMerge::ChromosomeVectorMerge(const std::vector*>&, bool)’ at ./libmaus2/bambam/ChromosomeVectorMerge.hpp:170:23: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::set; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘libmaus2::bambam::ChromosomeVectorMerge::ChromosomeVectorMerge(const std::vector*>&, bool)’ at ./libmaus2/bambam/ChromosomeVectorMerge.hpp:204:19: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::set; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘libmaus2::bambam::ChromosomeVectorMerge::ChromosomeVectorMerge(const std::vector*>&, bool)’ at ./libmaus2/bambam/ChromosomeVectorMerge.hpp:204:38: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::set; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘libmaus2::bambam::ChromosomeVectorMerge::ChromosomeVectorMerge(const std::vector*>&, bool)’ at ./libmaus2/bambam/ChromosomeVectorMerge.hpp:206:20: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::set; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘libmaus2::bambam::ChromosomeVectorMerge::ChromosomeVectorMerge(const std::vector*>&, bool)’ at ./libmaus2/bambam/ChromosomeVectorMerge.hpp:206:40: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In function ‘constexpr std::pair<_FIter, _FIter> std::equal_range(_FIter, _FIter, const _Tp&, _Compare) [with _FIter = __gnu_cxx::__normal_iterator >; _Tp = libmaus2::bambam::Chromosome; _Compare = libmaus2::bambam::ChromosomeVectorMerge::ChromosomeIndexComparator]’, inlined from ‘libmaus2::bambam::ChromosomeVectorMerge::ChromosomeVectorMerge(const std::vector*>&, bool)’ at ./libmaus2/bambam/ChromosomeVectorMerge.hpp:249:56: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:2180:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2180 | return std::__equal_range(__first, __last, __val, __comp); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = std::__cxx11::basic_string; _Tp = long long unsigned int; _Compare = std::less >; _Alloc = std::allocator, long long unsigned int> >]’, inlined from ‘libmaus2::bambam::ProgramHeaderLineSet::ProgramHeaderLineSet(const std::string&)’ at ./libmaus2/bambam/ProgramHeaderLineSet.hpp:56:38: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:559:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, long long unsigned int>, std::_Select1st, long long unsigned int> >, std::less >, std::allocator, long long unsigned int> > >::const_iterator’ changed in GCC 7.1 559 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = std::__cxx11::basic_string; _Tp = long long unsigned int; _Compare = std::less >; _Alloc = std::allocator, long long unsigned int> >]’, inlined from ‘libmaus2::bambam::ProgramHeaderLinesMerge::ProgramHeaderLinesMerge(const std::vector*>&)’ at ./libmaus2/bambam/ProgramHeaderLineSet.hpp:397:35: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:559:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, long long unsigned int>, std::_Select1st, long long unsigned int> >, std::less >, std::allocator, long long unsigned int> > >::const_iterator’ changed in GCC 7.1 559 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string; _Tp = long long unsigned int; _Compare = std::less >; _Alloc = std::allocator, long long unsigned int> >]’, inlined from ‘libmaus2::bambam::ProgramHeaderLinesMerge::ProgramHeaderLinesMerge(const std::vector*>&)’ at ./libmaus2/bambam/ProgramHeaderLineSet.hpp:412:68: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, long long unsigned int>, std::_Select1st, long long unsigned int> >, std::less >, std::allocator, long long unsigned int> > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string; _Tp = long long unsigned int; _Compare = std::less >; _Alloc = std::allocator, long long unsigned int> >]’, inlined from ‘libmaus2::bambam::ProgramHeaderLinesMerge::ProgramHeaderLinesMerge(const std::vector*>&)’ at ./libmaus2/bambam/ProgramHeaderLineSet.hpp:475:21: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, long long unsigned int>, std::_Select1st, long long unsigned int> >, std::less >, std::allocator, long long unsigned int> > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In static member function ‘static libmaus2::hashing::ConstantStringHash::shared_ptr_type libmaus2::hashing::ConstantStringHash::constructShared(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]’, inlined from ‘void libmaus2::bambam::BamHeader::initSetup()’ at ./libmaus2/bambam/BamHeader.hpp:965:67: ./libmaus2/hashing/ConstantStringHash.hpp:86:59: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 86 | shared_ptr_type s(new this_type(ita,ite,maxn)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h: In function ‘constexpr void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Distance = int; _Tp = pair; _Compare = less]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:229:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 229 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h: In function ‘constexpr void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Size = int; _Compare = less]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1884:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1884 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1884:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 In function ‘constexpr void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = less]’, inlined from ‘constexpr _RandomAccessIterator std::__unguarded_partition_pivot(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = less]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1863:34, inlined from ‘constexpr void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Size = int; _Compare = less]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1897:38: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:94:27: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 94 | std::iter_swap(__result, __b); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:96:27: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 96 | std::iter_swap(__result, __c); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:98:27: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 98 | std::iter_swap(__result, __a); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h: In function ‘constexpr void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Size = int; _Compare = less]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1898:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1898 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘constexpr void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = less]’, inlined from ‘constexpr void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator*, vector > >]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:4817:18, inlined from ‘std::vector > libmaus2::bambam::BamIndex::reg2chunks(uint64_t, uint64_t, uint64_t) const’ at ./libmaus2/bambam/BamIndex.hpp:379:14: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1913:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1913 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1914 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1915 | __comp); | ~~~~~~~ In function ‘constexpr void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = less]’, inlined from ‘constexpr void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = less]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1916:31, inlined from ‘constexpr void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator*, vector > >]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:4817:18, inlined from ‘std::vector > libmaus2::bambam::BamIndex::reg2chunks(uint64_t, uint64_t, uint64_t) const’ at ./libmaus2/bambam/BamIndex.hpp:379:14: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1821:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1821 | std::__insertion_sort(__first, __first + __threshold, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1826:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1826 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testbamcat test/testbamcat-testbamcat.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testbamcat test/testbamcat-testbamcat.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testautoarray2d-testautoarray2d.o `test -f 'test/testautoarray2d.cpp' || echo './'`test/testautoarray2d.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testautoarray2d test/testautoarray2d-testautoarray2d.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testautoarray2d test/testautoarray2d-testautoarray2d.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testhist-testhist.o `test -f 'test/testhist.cpp' || echo './'`test/testhist.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testhist test/testhist-testhist.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testhist test/testhist-testhist.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testfastaparse-testfastaparse.o `test -f 'test/testfastaparse.cpp' || echo './'`test/testfastaparse.cpp In file included from test/testfastaparse.cpp:27: ./libmaus2/wavelet/DynamicWaveletTree.hpp: In instantiation of ‘void libmaus2::wavelet::DynamicWaveletTree<_k, _w>::remove(uint64_t) [with unsigned int _k = 8; unsigned int _w = 8; uint64_t = long long unsigned int]’: test/testfastaparse.cpp:115:15: required from here 115 | D.remove(delpos); | ~~~~~~~~^~~~~~~~ ./libmaus2/wavelet/DynamicWaveletTree.hpp:199:42: warning: variable ‘m’ set but not used [-Wunused-but-set-variable=] 199 | uint64_t m = (1ull << (b-1)); | ^ /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testfastaparse test/testfastaparse-testfastaparse.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testfastaparse test/testfastaparse-testfastaparse.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testvalidatebamindex-testvalidatebamindex.o `test -f 'test/testvalidatebamindex.cpp' || echo './'`test/testvalidatebamindex.cpp In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/bambam/BamAuxFilterVector.hpp:22, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:27, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamIndexGenerator.hpp:31, from test/testvalidatebamindex.cpp:21: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/bambam/CigarStringParser.hpp:25, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ In file included from ./libmaus2/bambam/BamAlignmentDecoder.hpp:24, from ./libmaus2/bambam/BamDecoder.hpp:22, from test/testvalidatebamindex.cpp:23: ./libmaus2/bambam/BamHeaderLowMem.hpp: In member function ‘void libmaus2::bambam::BamHeaderLowMem::setupFromText()’: ./libmaus2/bambam/BamHeaderLowMem.hpp:366:58: warning: variable ‘ln’ set but not used [-Wunused-but-set-variable=] 366 | uint64_t ln = 0; | ^~ In file included from /usr/arm-linux-gnueabihf/include/c++/16/algorithm:63, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/bambam/BamIndexBin.hpp:22, from ./libmaus2/bambam/BamIndexRef.hpp:22, from ./libmaus2/bambam/BamIndex.hpp:22, from test/testvalidatebamindex.cpp:20: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h: In function ‘constexpr void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = less]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1884:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1884 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1884:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1898:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1898 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘constexpr void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = less]’, inlined from ‘constexpr void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:4817:18, inlined from ‘void libmaus2::trie::LinearHashTrie<_char_type, _id_type>::fillDepthParent() [with _char_type = char; _id_type = unsigned int]’ at ./libmaus2/trie/TrieState.hpp:261:14: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1913:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1913 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1914 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1915 | __comp); | ~~~~~~~ In file included from ./libmaus2/bambam/BamHeader.hpp:36, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:30: ./libmaus2/hashing/ConstantStringHash.hpp: In constructor ‘libmaus2::hashing::ConstantStringHash::ConstantStringHash(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]’: ./libmaus2/hashing/ConstantStringHash.hpp:96:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 96 | ConstantStringHash(iterator ita, iterator ite, uint64_t const maxn = 64*1024) | ^~~~~~~~~~~~~~~~~~ ./libmaus2/hashing/ConstantStringHash.hpp:96:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In static member function ‘static libmaus2::hashing::ConstantStringHash::shared_ptr_type libmaus2::hashing::ConstantStringHash::constructShared(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]’, inlined from ‘void libmaus2::bambam::BamHeader::initSetup()’ at ./libmaus2/bambam/BamHeader.hpp:965:67: ./libmaus2/hashing/ConstantStringHash.hpp:86:59: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 86 | shared_ptr_type s(new this_type(ita,ite,maxn)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testvalidatebamindex test/testvalidatebamindex-testvalidatebamindex.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testvalidatebamindex test/testvalidatebamindex-testvalidatebamindex.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testeditdistance-testeditdistance.o `test -f 'test/testeditdistance.cpp' || echo './'`test/testeditdistance.cpp In file included from ./libmaus2/lcs/EditDistanceTraceContainer.hpp:22, from ./libmaus2/lcs/EditDistance.hpp:24, from ./libmaus2/lcs/MetaEditDistance.hpp:22, from test/testeditdistance.cpp:20: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testeditdistance test/testeditdistance-testeditdistance.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testeditdistance test/testeditdistance-testeditdistance.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testsimplethreadpool-testsimplethreadpool.o `test -f 'test/testsimplethreadpool.cpp' || echo './'`test/testsimplethreadpool.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testsimplethreadpool test/testsimplethreadpool-testsimplethreadpool.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testsimplethreadpool test/testsimplethreadpool-testsimplethreadpool.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testsimplethreadpoolbamdecode-testsimplethreadpoolbamdecode.o `test -f 'test/testsimplethreadpoolbamdecode.cpp' || echo './'`test/testsimplethreadpoolbamdecode.cpp In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/bambam/BamAuxFilterVector.hpp:22, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:27, from ./libmaus2/bambam/BamAlignment.hpp:24, from test/testsimplethreadpoolbamdecode.cpp:19: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/bambam/CigarStringParser.hpp:25, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ In file included from ./libmaus2/bambam/BamAlignmentDecoder.hpp:24, from ./libmaus2/bambam/BamDecoder.hpp:22, from test/testsimplethreadpoolbamdecode.cpp:21: ./libmaus2/bambam/BamHeaderLowMem.hpp: In member function ‘void libmaus2::bambam::BamHeaderLowMem::setupFromText()’: ./libmaus2/bambam/BamHeaderLowMem.hpp:366:58: warning: variable ‘ln’ set but not used [-Wunused-but-set-variable=] 366 | uint64_t ln = 0; | ^~ In file included from /usr/arm-linux-gnueabihf/include/c++/16/algorithm:63, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h: In function ‘constexpr void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = less]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1884:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1884 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1884:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1898:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1898 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ./libmaus2/bambam/BamHeader.hpp:36, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:30: ./libmaus2/hashing/ConstantStringHash.hpp: In constructor ‘libmaus2::hashing::ConstantStringHash::ConstantStringHash(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]’: ./libmaus2/hashing/ConstantStringHash.hpp:96:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 96 | ConstantStringHash(iterator ita, iterator ite, uint64_t const maxn = 64*1024) | ^~~~~~~~~~~~~~~~~~ ./libmaus2/hashing/ConstantStringHash.hpp:96:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In function ‘constexpr void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = less]’, inlined from ‘constexpr void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:4817:18, inlined from ‘void libmaus2::trie::LinearHashTrie<_char_type, _id_type>::fillDepthParent() [with _char_type = char; _id_type = unsigned int]’ at ./libmaus2/trie/TrieState.hpp:261:14: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1913:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1913 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1914 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1915 | __comp); | ~~~~~~~ In static member function ‘static libmaus2::hashing::ConstantStringHash::shared_ptr_type libmaus2::hashing::ConstantStringHash::constructShared(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]’, inlined from ‘void libmaus2::bambam::BamHeader::initSetup()’ at ./libmaus2/bambam/BamHeader.hpp:965:67: ./libmaus2/hashing/ConstantStringHash.hpp:86:59: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 86 | shared_ptr_type s(new this_type(ita,ite,maxn)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testsimplethreadpoolbamdecode test/testsimplethreadpoolbamdecode-testsimplethreadpoolbamdecode.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testsimplethreadpoolbamdecode test/testsimplethreadpoolbamdecode-testsimplethreadpoolbamdecode.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testgaparraybyte-testgaparraybyte.o `test -f 'test/testgaparraybyte.cpp' || echo './'`test/testgaparraybyte.cpp In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/util/IntervalTree.hpp:25, from ./libmaus2/huffman/GapDecoder.hpp:26, from ./libmaus2/huffman/GapEncoder.hpp:25, from ./libmaus2/suffixsort/GapArrayByte.hpp:25, from test/testgaparraybyte.cpp:24: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/suffixsort/GapArrayByte.hpp:29: ./libmaus2/util/AtomicArray.hpp: At global scope: ./libmaus2/util/AtomicArray.hpp:45:43: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 45 | AtomicArray(AtomicArray const & O) = delete; | ^~~~~~~~~~~~~~~~~ ./libmaus2/util/AtomicArray.hpp:45:43: note: remove the ‘< >’ ./libmaus2/suffixsort/GapArrayByte.hpp: In member function ‘void libmaus2::suffixsort::GapArrayByte::flush()’: ./libmaus2/suffixsort/GapArrayByte.hpp:134:42: warning: variable ‘overflowcnt’ set but not used [-Wunused-but-set-variable=] 134 | uint64_t overflowcnt = 0; | ^~~~~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:183, from ./libmaus2/huffman/CanonicalEncoder.hpp:26, from ./libmaus2/huffman/GapEncoder.hpp:23: ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 2]’: ./libmaus2/huffman/HuffmanSorting.hpp:860:55: required from here 860 | huffman::EncodeTable enctable ( root ); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:188: ./libmaus2/huffman/HuffmanSorting.hpp: In instantiation of ‘static void libmaus2::huffman::HuffmanSorting::uncompressHuffmanCoded(uint64_t*, uint64_t, uint64_t, uint64_t, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::HuffmanTreeNode*, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::EncodeTable&) [with unsigned int lookupwords = 2; uint64_t = long long unsigned int]’: ./libmaus2/huffman/HuffmanSorting.hpp:1091:27: required from here 1091 | uncompressHuffmanCoded(acode.get(), 0 /* bit offset */, lowhalf /* syms */, firsthighsym, enctable,dectable,root.get(),dectable0,dectable1,enctable0,enctable1); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/huffman/HuffmanSorting.hpp:534:42: warning: variable ‘alldecoffset’ set but not used [-Wunused-but-set-variable=] 534 | uint64_t alldecoffset = highdecoffset; | ^~~~~~~~~~~~ ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 1]’: ./libmaus2/huffman/CanonicalEncoder.hpp:219:116: required from here 219 | return ::libmaus2::huffman::EncodeTable<1>::unique_ptr_type(new ::libmaus2::huffman::EncodeTable<1>(Ptree.get())); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/16/algorithm:63, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/util/GetFileSize.hpp:24, from ./libmaus2/aio/SynchronousGenericInput.hpp:23, from ./libmaus2/suffixsort/GapArrayByteDecoder.hpp:24, from ./libmaus2/suffixsort/GapArrayByteDecoderBuffer.hpp:22, from ./libmaus2/suffixsort/GapArrayByte.hpp:22: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h: In function ‘constexpr void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Distance = int; _Tp = pair; _Compare = libmaus2::sorting::MergingReadBack::HeapOrderAdapter]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:229:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 229 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testgaparraybyte test/testgaparraybyte-testgaparraybyte.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testgaparraybyte test/testgaparraybyte-testgaparraybyte.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testzlibconcat-testzlibconcat.o `test -f 'test/testzlibconcat.cpp' || echo './'`test/testzlibconcat.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testzlibconcat test/testzlibconcat-testzlibconcat.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testzlibconcat test/testzlibconcat-testzlibconcat.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testsimplecompressblock-testsimplecompressblock.o `test -f 'test/testsimplecompressblock.cpp' || echo './'`test/testsimplecompressblock.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testsimplecompressblock test/testsimplecompressblock-testsimplecompressblock.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testsimplecompressblock test/testsimplecompressblock-testsimplecompressblock.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testfaindex-testfaindex.o `test -f 'test/testfaindex.cpp' || echo './'`test/testfaindex.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testfaindex test/testfaindex-testfaindex.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testfaindex test/testfaindex-testfaindex.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testfastablockrecode-testfastablockrecode.o `test -f 'test/testfastablockrecode.cpp' || echo './'`test/testfastablockrecode.cpp In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/bambam/BamAuxFilterVector.hpp:22, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:27, from ./libmaus2/fastx/FastaBPSequenceDecoder.hpp:25, from ./libmaus2/fastx/FastaBPDecoder.hpp:22, from test/testfastablockrecode.cpp:21: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/bambam/CigarStringParser.hpp:25, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testfastablockrecode test/testfastablockrecode-testfastablockrecode.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testfastablockrecode test/testfastablockrecode-testfastablockrecode.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testrlhist-testrlhist.o `test -f 'test/testrlhist.cpp' || echo './'`test/testrlhist.cpp In file included from ./libmaus2/huffman/huffman.hpp:183, from ./libmaus2/huffman/CanonicalEncoder.hpp:26, from ./libmaus2/huffman/RLDecoder.hpp:27, from test/testrlhist.cpp:20: ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 2]’: ./libmaus2/huffman/HuffmanSorting.hpp:860:55: required from here 860 | huffman::EncodeTable enctable ( root ); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:188: ./libmaus2/huffman/HuffmanSorting.hpp: In instantiation of ‘static void libmaus2::huffman::HuffmanSorting::uncompressHuffmanCoded(uint64_t*, uint64_t, uint64_t, uint64_t, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::HuffmanTreeNode*, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::EncodeTable&) [with unsigned int lookupwords = 2; uint64_t = long long unsigned int]’: ./libmaus2/huffman/HuffmanSorting.hpp:1091:27: required from here 1091 | uncompressHuffmanCoded(acode.get(), 0 /* bit offset */, lowhalf /* syms */, firsthighsym, enctable,dectable,root.get(),dectable0,dectable1,enctable0,enctable1); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/huffman/HuffmanSorting.hpp:534:42: warning: variable ‘alldecoffset’ set but not used [-Wunused-but-set-variable=] 534 | uint64_t alldecoffset = highdecoffset; | ^~~~~~~~~~~~ ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 1]’: ./libmaus2/huffman/CanonicalEncoder.hpp:219:116: required from here 219 | return ::libmaus2::huffman::EncodeTable<1>::unique_ptr_type(new ::libmaus2::huffman::EncodeTable<1>(Ptree.get())); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testrlhist test/testrlhist-testrlhist.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testrlhist test/testrlhist-testrlhist.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testnumcpus-testnumcpus.o `test -f 'test/testnumcpus.cpp' || echo './'`test/testnumcpus.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testnumcpus test/testnumcpus-testnumcpus.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testnumcpus test/testnumcpus-testnumcpus.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testdiag-testdiag.o `test -f 'test/testdiag.cpp' || echo './'`test/testdiag.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testdiag test/testdiag-testdiag.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testdiag test/testdiag-testdiag.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testlowmembamheaderparser-testlowmembamheaderparser.o `test -f 'test/testlowmembamheaderparser.cpp' || echo './'`test/testlowmembamheaderparser.cpp In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/bambam/BamAuxFilterVector.hpp:22, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:27, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from test/testlowmembamheaderparser.cpp:20: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/bambam/CigarStringParser.hpp:25, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ In file included from ./libmaus2/bambam/BamAlignmentDecoder.hpp:24: ./libmaus2/bambam/BamHeaderLowMem.hpp: In member function ‘void libmaus2::bambam::BamHeaderLowMem::setupFromText()’: ./libmaus2/bambam/BamHeaderLowMem.hpp:366:58: warning: variable ‘ln’ set but not used [-Wunused-but-set-variable=] 366 | uint64_t ln = 0; | ^~ In file included from /usr/arm-linux-gnueabihf/include/c++/16/algorithm:63, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/lz/StreamWrapperBuffer.hpp:23, from ./libmaus2/lz/StreamWrapper.hpp:22, from ./libmaus2/aio/PosixFdInput.hpp:26, from ./libmaus2/aio/PosixFdInputWrapper.hpp:22, from ./libmaus2/aio/PosixFdInputStream.hpp:22, from test/testlowmembamheaderparser.cpp:19: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h: In function ‘constexpr void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = less]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1884:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1884 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1884:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1898:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1898 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘constexpr void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = less]’, inlined from ‘constexpr void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:4817:18, inlined from ‘void libmaus2::trie::LinearHashTrie<_char_type, _id_type>::fillDepthParent() [with _char_type = char; _id_type = unsigned int]’ at ./libmaus2/trie/TrieState.hpp:261:14: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1913:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1913 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1914 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1915 | __comp); | ~~~~~~~ In file included from ./libmaus2/bambam/BamHeader.hpp:36, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:30: ./libmaus2/hashing/ConstantStringHash.hpp: In constructor ‘libmaus2::hashing::ConstantStringHash::ConstantStringHash(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]’: ./libmaus2/hashing/ConstantStringHash.hpp:96:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 96 | ConstantStringHash(iterator ita, iterator ite, uint64_t const maxn = 64*1024) | ^~~~~~~~~~~~~~~~~~ ./libmaus2/hashing/ConstantStringHash.hpp:96:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In function ‘constexpr void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = less]’, inlined from ‘constexpr void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:4817:18, inlined from ‘void libmaus2::bambam::BamHeaderLowMem::setupFromText()’ at ./libmaus2/bambam/BamHeaderLowMem.hpp:737:16: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1913:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1913 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1914 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1915 | __comp); | ~~~~~~~ In static member function ‘static libmaus2::hashing::ConstantStringHash::unique_ptr_type libmaus2::hashing::ConstantStringHash::construct(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]’, inlined from ‘void libmaus2::bambam::BamHeaderLowMem::setupFromText()’ at ./libmaus2/bambam/BamHeaderLowMem.hpp:788:5: ./libmaus2/hashing/ConstantStringHash.hpp:71:59: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 71 | unique_ptr_type u(new this_type(ita,ite,maxn)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testlowmembamheaderparser test/testlowmembamheaderparser-testlowmembamheaderparser.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testlowmembamheaderparser test/testlowmembamheaderparser-testlowmembamheaderparser.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testgeneflatfile-testgeneflatfile.o `test -f 'test/testgeneflatfile.cpp' || echo './'`test/testgeneflatfile.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testgeneflatfile test/testgeneflatfile-testgeneflatfile.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testgeneflatfile test/testgeneflatfile-testgeneflatfile.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testurlinputstream-testurlinputstream.o `test -f 'test/testurlinputstream.cpp' || echo './'`test/testurlinputstream.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testurlinputstream test/testurlinputstream-testurlinputstream.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testurlinputstream test/testurlinputstream-testurlinputstream.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testsimpletrie-testsimpletrie.o `test -f 'test/testsimpletrie.cpp' || echo './'`test/testsimpletrie.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testsimpletrie test/testsimpletrie-testsimpletrie.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testsimpletrie test/testsimpletrie-testsimpletrie.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testlru-testlru.o `test -f 'test/testlru.cpp' || echo './'`test/testlru.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/16/bits/unordered_map.h:33, from /usr/arm-linux-gnueabihf/include/c++/16/unordered_map:43, from ./libmaus2/util/unordered_map.hpp:25, from ./libmaus2/lru/SparseLRU.hpp:23, from ./libmaus2/lru/SparseLRUFileBunch.hpp:24, from test/testlru.cpp:19: /usr/arm-linux-gnueabihf/include/c++/16/bits/hashtable.h: In function ‘std::_Hashtable<_Key, _Value, _Alloc, _ExtractKey, _Equal, _Hash, _RangeHash, _Unused, _RehashPolicy, _Traits>::iterator std::_Hashtable<_Key, _Value, _Alloc, _ExtractKey, _Equal, _Hash, _RangeHash, _Unused, _RehashPolicy, _Traits>::erase(const_iterator) [with _Key = long long unsigned int; _Value = std::pair; _Alloc = std::allocator >; _ExtractKey = std::__detail::_Select1st; _Equal = std::equal_to; _Hash = std::hash; _RangeHash = std::__detail::_Mod_range_hashing; _Unused = std::__detail::_Default_ranged_hash; _RehashPolicy = std::__detail::_Prime_rehash_policy; _Traits = std::__detail::_Hashtable_traits]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/hashtable.h:2577:5: note: parameter passing for argument of type ‘std::_Hashtable, std::allocator >, std::__detail::_Select1st, std::equal_to, std::hash, std::__detail::_Mod_range_hashing, std::__detail::_Default_ranged_hash, std::__detail::_Prime_rehash_policy, std::__detail::_Hashtable_traits >::const_iterator’ changed in GCC 7.1 2577 | _Hashtable<_Key, _Value, _Alloc, _ExtractKey, _Equal, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2578 | _Hash, _RangeHash, _Unused, _RehashPolicy, _Traits>:: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/16/map:64, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:51, from ./libmaus2/aio/PosixFdInputOutputStreamBuffer.hpp:26, from ./libmaus2/aio/PosixFdInputOutputStream.hpp:22, from ./libmaus2/aio/PosixFdInputOutputStreamFactory.hpp:23, from ./libmaus2/aio/InputOutputStreamFactoryContainer.hpp:23, from ./libmaus2/lru/SparseLRUFileBunch.hpp:22: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h:3250:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 3250 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h:3250:7: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 In member function ‘std::_Hashtable<_Key, _Value, _Alloc, _ExtractKey, _Equal, _Hash, _RangeHash, _Unused, _RehashPolicy, _Traits>::iterator std::_Hashtable<_Key, _Value, _Alloc, _ExtractKey, _Equal, _Hash, _RangeHash, _Unused, _RehashPolicy, _Traits>::erase(iterator) [with _Key = long long unsigned int; _Value = std::pair; _Alloc = std::allocator >; _ExtractKey = std::__detail::_Select1st; _Equal = std::equal_to; _Hash = std::hash; _RangeHash = std::__detail::_Mod_range_hashing; _Unused = std::__detail::_Default_ranged_hash; _RehashPolicy = std::__detail::_Prime_rehash_policy; _Traits = std::__detail::_Hashtable_traits]’, inlined from ‘std::unordered_map<_Key, _Tp, _Hash, _Pred, _Alloc>::iterator std::unordered_map<_Key, _Tp, _Hash, _Pred, _Alloc>::erase(iterator) [with _Key = long long unsigned int; _Tp = long long unsigned int; _Hash = std::hash; _Pred = std::equal_to; _Alloc = std::allocator >]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/unordered_map.h:893:26, inlined from ‘void libmaus2::lru::SparseLRU::erase(uint64_t)’ at ./libmaus2/lru/SparseLRU.hpp:67:23, inlined from ‘void libmaus2::lru::SparseLRUFileBunch::remove(uint64_t)’ at ./libmaus2/lru/SparseLRUFileBunch.hpp:57:16: /usr/arm-linux-gnueabihf/include/c++/16/bits/hashtable.h:1198:21: note: parameter passing for argument of type ‘std::_Hashtable, std::allocator >, std::__detail::_Select1st, std::equal_to, std::hash, std::__detail::_Mod_range_hashing, std::__detail::_Default_ranged_hash, std::__detail::_Prime_rehash_policy, std::__detail::_Hashtable_traits >::const_iterator’ changed in GCC 7.1 1198 | { return erase(const_iterator(__it)); } | ~~~~~^~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::_Hashtable<_Key, _Value, _Alloc, _ExtractKey, _Equal, _Hash, _RangeHash, _Unused, _RehashPolicy, _Traits>::iterator std::_Hashtable<_Key, _Value, _Alloc, _ExtractKey, _Equal, _Hash, _RangeHash, _Unused, _RehashPolicy, _Traits>::erase(iterator) [with _Key = long long unsigned int; _Value = std::pair; _Alloc = std::allocator >; _ExtractKey = std::__detail::_Select1st; _Equal = std::equal_to; _Hash = std::hash; _RangeHash = std::__detail::_Mod_range_hashing; _Unused = std::__detail::_Default_ranged_hash; _RehashPolicy = std::__detail::_Prime_rehash_policy; _Traits = std::__detail::_Hashtable_traits]’, inlined from ‘std::unordered_map<_Key, _Tp, _Hash, _Pred, _Alloc>::iterator std::unordered_map<_Key, _Tp, _Hash, _Pred, _Alloc>::erase(iterator) [with _Key = long long unsigned int; _Tp = long long unsigned int; _Hash = std::hash; _Pred = std::equal_to; _Alloc = std::allocator >]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/unordered_map.h:893:26, inlined from ‘void libmaus2::lru::SparseLRU::update(uint64_t)’ at ./libmaus2/lru/SparseLRU.hpp:52:23: /usr/arm-linux-gnueabihf/include/c++/16/bits/hashtable.h:1198:21: note: parameter passing for argument of type ‘std::_Hashtable, std::allocator >, std::__detail::_Select1st, std::equal_to, std::hash, std::__detail::_Mod_range_hashing, std::__detail::_Default_ranged_hash, std::__detail::_Prime_rehash_policy, std::__detail::_Hashtable_traits >::const_iterator’ changed in GCC 7.1 1198 | { return erase(const_iterator(__it)); } | ~~~~~^~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/16/map:65: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = long long unsigned int; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘void libmaus2::lru::SparseLRU::update(uint64_t)’ at ./libmaus2/lru/SparseLRU.hpp:58:23: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = long long unsigned int; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘int64_t libmaus2::lru::SparseLRU::get(uint64_t)’ at ./libmaus2/lru/SparseLRU.hpp:91:24: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::_Hashtable<_Key, _Value, _Alloc, _ExtractKey, _Equal, _Hash, _RangeHash, _Unused, _RehashPolicy, _Traits>::iterator std::_Hashtable<_Key, _Value, _Alloc, _ExtractKey, _Equal, _Hash, _RangeHash, _Unused, _RehashPolicy, _Traits>::erase(iterator) [with _Key = long long unsigned int; _Value = std::pair; _Alloc = std::allocator >; _ExtractKey = std::__detail::_Select1st; _Equal = std::equal_to; _Hash = std::hash; _RangeHash = std::__detail::_Mod_range_hashing; _Unused = std::__detail::_Default_ranged_hash; _RehashPolicy = std::__detail::_Prime_rehash_policy; _Traits = std::__detail::_Hashtable_traits]’, inlined from ‘std::unordered_map<_Key, _Tp, _Hash, _Pred, _Alloc>::iterator std::unordered_map<_Key, _Tp, _Hash, _Pred, _Alloc>::erase(iterator) [with _Key = long long unsigned int; _Tp = long long unsigned int; _Hash = std::hash; _Pred = std::equal_to; _Alloc = std::allocator >]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/unordered_map.h:893:26, inlined from ‘int64_t libmaus2::lru::SparseLRU::get(uint64_t)’ at ./libmaus2/lru/SparseLRU.hpp:101:23: /usr/arm-linux-gnueabihf/include/c++/16/bits/hashtable.h:1198:21: note: parameter passing for argument of type ‘std::_Hashtable, std::allocator >, std::__detail::_Select1st, std::equal_to, std::hash, std::__detail::_Mod_range_hashing, std::__detail::_Default_ranged_hash, std::__detail::_Prime_rehash_policy, std::__detail::_Hashtable_traits >::const_iterator’ changed in GCC 7.1 1198 | { return erase(const_iterator(__it)); } | ~~~~~^~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = long long unsigned int; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘int64_t libmaus2::lru::SparseLRU::get(uint64_t)’ at ./libmaus2/lru/SparseLRU.hpp:105:23: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘libmaus2::aio::InputOutputStream& libmaus2::lru::SparseLRUFileBunch::operator[](uint64_t)’ at ./libmaus2/lru/SparseLRUFileBunch.hpp:94:19: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘libmaus2::aio::InputOutputStream& libmaus2::lru::SparseLRUFileBunch::operator[](uint64_t)’ at ./libmaus2/lru/SparseLRUFileBunch.hpp:106:19: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testlru test/testlru-testlru.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testlru test/testlru-testlru.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testbytecnt-testbytecnt.o `test -f 'test/testbytecnt.cpp' || echo './'`test/testbytecnt.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testbytecnt test/testbytecnt-testbytecnt.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testbytecnt test/testbytecnt-testbytecnt.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o test/teststronglyconnectedcomponents-teststronglyconnectedcomponents.o `test -f 'test/teststronglyconnectedcomponents.cpp' || echo './'`test/teststronglyconnectedcomponents.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/16/map:64, from ./libmaus2/graph/StronglyConnectedComponents.hpp:23, from test/teststronglyconnectedcomponents.cpp:19: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h: In function ‘std::pair::rebind<_Val>::other>::pointer>::_Base_ptr, typename std::__rb_tree::_Node_traits<_Val, typename __gnu_cxx::__alloc_traits::rebind<_Val>::other>::pointer>::_Base_ptr> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(const_iterator, const key_type&) [with _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h:2952:5: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 2952 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h:3250:7: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 3250 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h:3250:7: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/16/algorithm:63, from ./libmaus2/graph/StronglyConnectedComponents.hpp:26: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h: In function ‘constexpr void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = less]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1884:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1884 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1884:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1898:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1898 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/16/map:65: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::vector; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘static std::pair, std::vector > libmaus2::graph::StronglyConnectedComponents::strongConnectContract(const std::map >&, uint64_t, projector_type) [with edge_type = long long unsigned int; projector_type = libmaus2::graph::IdentityTargetProjector]’ at ./libmaus2/graph/StronglyConnectedComponents.hpp:304:12: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In function ‘constexpr void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = less]’, inlined from ‘constexpr void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:4817:18, inlined from ‘static std::pair, std::vector > libmaus2::graph::StronglyConnectedComponents::strongConnectContract(const std::map >&, uint64_t, projector_type) [with edge_type = long long unsigned int; projector_type = libmaus2::graph::IdentityTargetProjector]’ at ./libmaus2/graph/StronglyConnectedComponents.hpp:462:20: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1913:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1913 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1914 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1915 | __comp); | ~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::vector; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘static std::pair, std::vector > libmaus2::graph::StronglyConnectedComponents::strongConnectContract(const std::map >&, uint64_t, projector_type) [with edge_type = long long unsigned int; projector_type = libmaus2::graph::IdentityTargetProjector]’ at ./libmaus2/graph/StronglyConnectedComponents.hpp:472:31: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::vector; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘static std::pair, std::vector > libmaus2::graph::StronglyConnectedComponents::strongConnectContract(const std::map >&, uint64_t, projector_type) [with edge_type = long long unsigned int; projector_type = libmaus2::graph::IdentityTargetProjector]’ at ./libmaus2/graph/StronglyConnectedComponents.hpp:503:31: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In function ‘constexpr void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = less]’, inlined from ‘constexpr void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:4817:18, inlined from ‘static std::pair, std::vector > libmaus2::graph::StronglyConnectedComponents::strongConnectContract(const std::map >&, uint64_t, projector_type) [with edge_type = long long unsigned int; projector_type = libmaus2::graph::IdentityTargetProjector]’ at ./libmaus2/graph/StronglyConnectedComponents.hpp:514:15: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1913:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1913 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1914 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1915 | __comp); | ~~~~~~~ In function ‘constexpr void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = less]’, inlined from ‘constexpr void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:4817:18, inlined from ‘static std::pair, std::vector > libmaus2::graph::StronglyConnectedComponents::strongConnectContract(const std::map >&, uint64_t, projector_type) [with edge_type = long long unsigned int; projector_type = libmaus2::graph::IdentityTargetProjector]’ at ./libmaus2/graph/StronglyConnectedComponents.hpp:462:20: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1913:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1913 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1914 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1915 | __comp); | ~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = long long unsigned int; _Tp = std::vector; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘void testStronglyConnectedComponents()’ at test/teststronglyconnectedcomponents.cpp:29:9: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:559:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 559 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = long long unsigned int; _Tp = std::vector; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘void testStronglyConnectedComponents()’ at test/teststronglyconnectedcomponents.cpp:30:9: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:559:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 559 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = long long unsigned int; _Tp = std::vector; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘void testStronglyConnectedComponents()’ at test/teststronglyconnectedcomponents.cpp:31:9: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:559:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 559 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = long long unsigned int; _Tp = std::vector; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘void testStronglyConnectedComponents()’ at test/teststronglyconnectedcomponents.cpp:32:9: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:559:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 559 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = long long unsigned int; _Tp = std::vector; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘void testStronglyConnectedComponents()’ at test/teststronglyconnectedcomponents.cpp:33:9: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:559:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 559 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = long long unsigned int; _Tp = std::vector; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘void testStronglyConnectedComponents()’ at test/teststronglyconnectedcomponents.cpp:34:9: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:559:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 559 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = long long unsigned int; _Tp = std::vector; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘void testStronglyConnectedComponents()’ at test/teststronglyconnectedcomponents.cpp:35:9: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:559:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 559 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = long long unsigned int; _Tp = std::vector; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘void testStronglyConnectedComponents()’ at test/teststronglyconnectedcomponents.cpp:37:9: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:559:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 559 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = long long unsigned int; _Tp = std::vector; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘void testStronglyConnectedComponents()’ at test/teststronglyconnectedcomponents.cpp:39:9: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:559:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 559 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = long long unsigned int; _Tp = std::vector; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘void testStronglyConnectedComponents()’ at test/teststronglyconnectedcomponents.cpp:40:9: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:559:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 559 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = long long unsigned int; _Tp = std::vector; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘void testStronglyConnectedComponents()’ at test/teststronglyconnectedcomponents.cpp:41:9: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:559:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 559 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = long long unsigned int; _Tp = std::vector; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘void testStronglyConnectedComponents()’ at test/teststronglyconnectedcomponents.cpp:42:9: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:559:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 559 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = long long unsigned int; _Tp = std::vector; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘void testStronglyConnectedComponents()’ at test/teststronglyconnectedcomponents.cpp:44:9: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:559:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 559 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = long long unsigned int; _Tp = std::vector; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘void testStronglyConnectedComponents()’ at test/teststronglyconnectedcomponents.cpp:45:9: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:559:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 559 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = long long unsigned int; _Tp = std::vector; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘void testStronglyConnectedComponents()’ at test/teststronglyconnectedcomponents.cpp:46:9: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:559:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 559 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = long long unsigned int; _Tp = std::vector; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘void testStronglyConnectedComponents()’ at test/teststronglyconnectedcomponents.cpp:47:9: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:559:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 559 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = long long unsigned int; _Tp = std::vector; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘void testStronglyConnectedComponents()’ at test/teststronglyconnectedcomponents.cpp:48:9: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:559:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 559 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = long long unsigned int; _Tp = std::vector; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘void testStronglyConnectedComponents()’ at test/teststronglyconnectedcomponents.cpp:49:10: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:559:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 559 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o teststronglyconnectedcomponents test/teststronglyconnectedcomponents-teststronglyconnectedcomponents.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/teststronglyconnectedcomponents test/teststronglyconnectedcomponents-teststronglyconnectedcomponents.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testtopologicalsorting-testtopologicalsorting.o `test -f 'test/testtopologicalsorting.cpp' || echo './'`test/testtopologicalsorting.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/16/set:64, from ./libmaus2/graph/ReachableVertices.hpp:22, from ./libmaus2/graph/TopologicalSorting.hpp:22, from test/testtopologicalsorting.cpp:20: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h:3250:7: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 3250 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/16/map:65, from ./libmaus2/graph/ReachableVertices.hpp:23: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::set; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘static std::pair > libmaus2::graph::TopologicalSorting::topologicalSorting(const std::map >&, uint64_t, projector_type) [with edge_type = long long unsigned int; projector_type = libmaus2::graph::IdentityTargetProjector]’ at ./libmaus2/graph/TopologicalSorting.hpp:51:24, inlined from ‘void testTopologicalSorting(const std::map >&)’ at test/testtopologicalsorting.cpp:38:166: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::set; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘static std::pair > libmaus2::graph::TopologicalSorting::topologicalSorting(const std::map >&, uint64_t, projector_type) [with edge_type = long long unsigned int; projector_type = libmaus2::graph::IdentityTargetProjector]’ at ./libmaus2/graph/TopologicalSorting.hpp:52:24, inlined from ‘void testTopologicalSorting(const std::map >&)’ at test/testtopologicalsorting.cpp:38:166: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::set; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘static std::pair > libmaus2::graph::TopologicalSorting::topologicalSorting(const std::map >&, uint64_t, projector_type) [with edge_type = long long unsigned int; projector_type = libmaus2::graph::IdentityTargetProjector]’ at ./libmaus2/graph/TopologicalSorting.hpp:77:23, inlined from ‘void testTopologicalSorting(const std::map >&)’ at test/testtopologicalsorting.cpp:38:166: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::set; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘static std::pair > libmaus2::graph::TopologicalSorting::topologicalSorting(const std::map >&, uint64_t, projector_type) [with edge_type = long long unsigned int; projector_type = libmaus2::graph::IdentityTargetProjector]’ at ./libmaus2/graph/TopologicalSorting.hpp:77:38, inlined from ‘void testTopologicalSorting(const std::map >&)’ at test/testtopologicalsorting.cpp:38:166: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::set; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘static std::pair > libmaus2::graph::TopologicalSorting::topologicalSorting(const std::map >&, uint64_t, projector_type) [with edge_type = long long unsigned int; projector_type = libmaus2::graph::IdentityTargetProjector]’ at ./libmaus2/graph/TopologicalSorting.hpp:80:23, inlined from ‘void testTopologicalSorting(const std::map >&)’ at test/testtopologicalsorting.cpp:38:166: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::set; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘static std::pair > libmaus2::graph::TopologicalSorting::topologicalSorting(const std::map >&, uint64_t, projector_type) [with edge_type = long long unsigned int; projector_type = libmaus2::graph::IdentityTargetProjector]’ at ./libmaus2/graph/TopologicalSorting.hpp:80:38, inlined from ‘void testTopologicalSorting(const std::map >&)’ at test/testtopologicalsorting.cpp:38:166: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testtopologicalsorting test/testtopologicalsorting-testtopologicalsorting.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testtopologicalsorting test/testtopologicalsorting-testtopologicalsorting.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testlinebuffer-testlinebuffer.o `test -f 'test/testlinebuffer.cpp' || echo './'`test/testlinebuffer.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testlinebuffer test/testlinebuffer-testlinebuffer.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testlinebuffer test/testlinebuffer-testlinebuffer.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testsamdecoder-testsamdecoder.o `test -f 'test/testsamdecoder.cpp' || echo './'`test/testsamdecoder.cpp In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/bambam/BamAuxFilterVector.hpp:22, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:27, from ./libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from ./libmaus2/bambam/BamWriter.hpp:22, from ./libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from test/testsamdecoder.cpp:21: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/bambam/CigarStringParser.hpp:25, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ In file included from ./libmaus2/bambam/SamInfo.hpp:26, from ./libmaus2/bambam/SamDecoder.hpp:23, from test/testsamdecoder.cpp:22: ./libmaus2/bambam/BamHeaderLowMem.hpp: In member function ‘void libmaus2::bambam::BamHeaderLowMem::setupFromText()’: ./libmaus2/bambam/BamHeaderLowMem.hpp:366:58: warning: variable ‘ln’ set but not used [-Wunused-but-set-variable=] 366 | uint64_t ln = 0; | ^~ In file included from /usr/arm-linux-gnueabihf/include/c++/16/algorithm:63, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/lz/StreamWrapperBuffer.hpp:23, from ./libmaus2/lz/StreamWrapper.hpp:22, from ./libmaus2/aio/PosixFdInput.hpp:26, from ./libmaus2/aio/PosixFdInputWrapper.hpp:22, from ./libmaus2/aio/PosixFdInputStream.hpp:22, from test/testsamdecoder.cpp:20: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h: In function ‘constexpr void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = less]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1884:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1884 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1884:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1898:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1898 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘constexpr void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = less]’, inlined from ‘constexpr void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:4817:18, inlined from ‘void libmaus2::trie::LinearHashTrie<_char_type, _id_type>::fillDepthParent() [with _char_type = char; _id_type = unsigned int]’ at ./libmaus2/trie/TrieState.hpp:261:14: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1913:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1913 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1914 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1915 | __comp); | ~~~~~~~ In file included from ./libmaus2/bambam/BamHeader.hpp:36, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:30: ./libmaus2/hashing/ConstantStringHash.hpp: In constructor ‘libmaus2::hashing::ConstantStringHash::ConstantStringHash(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]’: ./libmaus2/hashing/ConstantStringHash.hpp:96:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 96 | ConstantStringHash(iterator ita, iterator ite, uint64_t const maxn = 64*1024) | ^~~~~~~~~~~~~~~~~~ ./libmaus2/hashing/ConstantStringHash.hpp:96:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:61: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h: In function ‘constexpr void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Compare = libmaus2::lz::BgzfDeflateBlockIdComparator]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:229:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 229 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In static member function ‘static libmaus2::hashing::ConstantStringHash::shared_ptr_type libmaus2::hashing::ConstantStringHash::constructShared(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]’, inlined from ‘void libmaus2::bambam::BamHeader::initSetup()’ at ./libmaus2/bambam/BamHeader.hpp:965:67: ./libmaus2/hashing/ConstantStringHash.hpp:86:59: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 86 | shared_ptr_type s(new this_type(ita,ite,maxn)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testsamdecoder test/testsamdecoder-testsamdecoder.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testsamdecoder test/testsamdecoder-testsamdecoder.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testdecimalnumberparser-testdecimalnumberparser.o `test -f 'test/testdecimalnumberparser.cpp' || echo './'`test/testdecimalnumberparser.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testdecimalnumberparser test/testdecimalnumberparser-testdecimalnumberparser.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testdecimalnumberparser test/testdecimalnumberparser-testdecimalnumberparser.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testunsignedinteger-testunsignedinteger.o `test -f 'test/testunsignedinteger.cpp' || echo './'`test/testunsignedinteger.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testunsignedinteger test/testunsignedinteger-testunsignedinteger.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testunsignedinteger test/testunsignedinteger-testunsignedinteger.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testmd5-testmd5.o `test -f 'test/testmd5.cpp' || echo './'`test/testmd5.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testmd5 test/testmd5-testmd5.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testmd5 test/testmd5-testmd5.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testsha-testsha.o `test -f 'test/testsha.cpp' || echo './'`test/testsha.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testsha test/testsha-testsha.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testsha test/testsha-testsha.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testparallelbamvalidation-testparallelbamvalidation.o `test -f 'test/testparallelbamvalidation.cpp' || echo './'`test/testparallelbamvalidation.cpp In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/bambam/BamHeaderLowMem.hpp:25, from ./libmaus2/bambam/parallel/ParseInfo.hpp:22, from test/testparallelbamvalidation.cpp:40: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ ./libmaus2/bambam/BamHeaderLowMem.hpp: In member function ‘void libmaus2::bambam::BamHeaderLowMem::setupFromText()’: ./libmaus2/bambam/BamHeaderLowMem.hpp:366:58: warning: variable ‘ln’ set but not used [-Wunused-but-set-variable=] 366 | uint64_t ln = 0; | ^~ In file included from ./libmaus2/bambam/CigarStringParser.hpp:25, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/parallel/PushBackSpace.hpp:22, from ./libmaus2/bambam/parallel/ParseInfo.hpp:24: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/16/algorithm:63, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/lz/BgzfInflateHeaderBase.hpp:25, from ./libmaus2/bambam/parallel/InputBlock.hpp:22, from ./libmaus2/bambam/parallel/ControlInputInfo.hpp:22, from test/testparallelbamvalidation.cpp:20: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h: In function ‘constexpr void std::__pop_heap(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Compare = libmaus2::lz::BgzfThreadQueueElementHeapComparator]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:257:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 257 | __pop_heap(_RandomAccessIterator __first, _RandomAccessIterator __last, | ^~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:257:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:257:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h: In function ‘constexpr void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = less]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1884:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1884 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1884:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1898:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1898 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h: In function ‘constexpr void std::__pop_heap(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Compare = libmaus2::bambam::parallel::DecompressedPendingObjectHeapComparator]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:257:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 257 | __pop_heap(_RandomAccessIterator __first, _RandomAccessIterator __last, | ^~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:257:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:257:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 In function ‘constexpr void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = less]’, inlined from ‘constexpr void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:4817:18, inlined from ‘void libmaus2::trie::LinearHashTrie<_char_type, _id_type>::fillDepthParent() [with _char_type = char; _id_type = unsigned int]’ at ./libmaus2/trie/TrieState.hpp:261:14: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1913:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1913 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1914 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1915 | __comp); | ~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/16/map:64, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:51: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h:3250:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 3250 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ./libmaus2/bambam/BamHeaderLowMem.hpp:26: ./libmaus2/hashing/ConstantStringHash.hpp: In constructor ‘libmaus2::hashing::ConstantStringHash::ConstantStringHash(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]’: ./libmaus2/hashing/ConstantStringHash.hpp:96:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 96 | ConstantStringHash(iterator ita, iterator ite, uint64_t const maxn = 64*1024) | ^~~~~~~~~~~~~~~~~~ ./libmaus2/hashing/ConstantStringHash.hpp:96:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In function ‘constexpr void std::pop_heap(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator > >; _Compare = libmaus2::bambam::parallel::DecompressedPendingObjectHeapComparator]’, inlined from ‘void std::priority_queue<_Tp, _Sequence, _Compare>::pop() [with _Tp = libmaus2::bambam::parallel::DecompressedPendingObject; _Sequence = std::vector >; _Compare = libmaus2::bambam::parallel::DecompressedPendingObjectHeapComparator]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_queue.h:894:15, inlined from ‘libmaus2::parallel::LockedHeap<_value_type, _comparator_type>::value_type libmaus2::parallel::LockedHeap<_value_type, _comparator_type>::pop() [with _value_type = libmaus2::bambam::parallel::DecompressedPendingObject; _comparator_type = libmaus2::bambam::parallel::DecompressedPendingObjectHeapComparator]’ at ./libmaus2/parallel/LockedHeap.hpp:69:10, inlined from ‘void libmaus2::bambam::parallel::ValidationControl::checkParsePendingList()’ at test/testparallelbamvalidation.cpp:417:56: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:334:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 334 | std::__pop_heap(__first, __last, __last, __comp); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘constexpr void std::pop_heap(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator > >; _Compare = libmaus2::bambam::parallel::DecompressedPendingObjectHeapComparator]’, inlined from ‘void std::priority_queue<_Tp, _Sequence, _Compare>::pop() [with _Tp = libmaus2::bambam::parallel::DecompressedPendingObject; _Sequence = std::vector >; _Compare = libmaus2::bambam::parallel::DecompressedPendingObjectHeapComparator]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_queue.h:894:15, inlined from ‘libmaus2::parallel::LockedHeap<_value_type, _comparator_type>::value_type libmaus2::parallel::LockedHeap<_value_type, _comparator_type>::pop() [with _value_type = libmaus2::bambam::parallel::DecompressedPendingObject; _comparator_type = libmaus2::bambam::parallel::DecompressedPendingObjectHeapComparator]’ at ./libmaus2/parallel/LockedHeap.hpp:69:10, inlined from ‘void libmaus2::bambam::parallel::ValidationControl::checkParsePendingList()’ at test/testparallelbamvalidation.cpp:443:56: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:334:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 334 | std::__pop_heap(__first, __last, __last, __comp); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/16/map:65: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = bool; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void libmaus2::bambam::parallel::ValidationControl::validateBlockFragmentFinished(libmaus2::bambam::parallel::ValidationFragment&, bool)’ at test/testparallelbamvalidation.cpp:561:53: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = bool; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void libmaus2::bambam::parallel::ValidationControl::validateBlockFragmentFinished(libmaus2::bambam::parallel::ValidationFragment&, bool)’ at test/testparallelbamvalidation.cpp:561:28: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = bool; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void libmaus2::bambam::parallel::ValidationControl::putParsedBlockAddPending(libmaus2::bambam::parallel::AlignmentBuffer::shared_ptr_type)’ at test/testparallelbamvalidation.cpp:523:28: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In function ‘constexpr void std::pop_heap(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator > >; _Compare = libmaus2::lz::BgzfThreadQueueElementHeapComparator]’, inlined from ‘void std::priority_queue<_Tp, _Sequence, _Compare>::pop() [with _Tp = libmaus2::lz::BgzfThreadQueueElement; _Sequence = std::vector >; _Compare = libmaus2::lz::BgzfThreadQueueElementHeapComparator]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_queue.h:894:15, inlined from ‘libmaus2::parallel::StdTerminatableSynchronousHeap<_value_type, _compare>::value_type libmaus2::parallel::StdTerminatableSynchronousHeap<_value_type, _compare>::deque() [with _value_type = libmaus2::lz::BgzfThreadQueueElement; _compare = libmaus2::lz::BgzfThreadQueueElementHeapComparator]’ at ./libmaus2/parallel/StdTerminatableSynchronousHeap.hpp:117:12, inlined from ‘virtual void libmaus2::lz::BgzfInflateParallelThreadCallable::run()’ at ./libmaus2/lz/BgzfInflateParallelThread.hpp:59:54: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:334:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 334 | std::__pop_heap(__first, __last, __last, __comp); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘constexpr void std::pop_heap(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator > >; _Compare = libmaus2::lz::BgzfThreadQueueElementHeapComparator]’, inlined from ‘void std::priority_queue<_Tp, _Sequence, _Compare>::pop() [with _Tp = libmaus2::lz::BgzfThreadQueueElement; _Sequence = std::vector >; _Compare = libmaus2::lz::BgzfThreadQueueElementHeapComparator]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_queue.h:894:15, inlined from ‘libmaus2::parallel::StdTerminatableSynchronousHeap<_value_type, _compare>::value_type libmaus2::parallel::StdTerminatableSynchronousHeap<_value_type, _compare>::deque() [with _value_type = libmaus2::lz::BgzfThreadQueueElement; _compare = libmaus2::lz::BgzfThreadQueueElementHeapComparator]’ at ./libmaus2/parallel/StdTerminatableSynchronousHeap.hpp:117:12, inlined from ‘virtual void libmaus2::lz::BgzfInflateDeflateParallelThreadCallable::run()’ at ./libmaus2/lz/BgzfInflateDeflateParallelThread.hpp:297:54: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:334:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 334 | std::__pop_heap(__first, __last, __last, __comp); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘constexpr void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = less]’, inlined from ‘constexpr void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:4817:18, inlined from ‘void libmaus2::bambam::BamHeaderLowMem::setupFromText()’ at ./libmaus2/bambam/BamHeaderLowMem.hpp:737:16: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1913:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1913 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1914 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1915 | __comp); | ~~~~~~~ In static member function ‘static libmaus2::hashing::ConstantStringHash::unique_ptr_type libmaus2::hashing::ConstantStringHash::construct(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]’, inlined from ‘void libmaus2::bambam::BamHeaderLowMem::setupFromText()’ at ./libmaus2/bambam/BamHeaderLowMem.hpp:788:5: ./libmaus2/hashing/ConstantStringHash.hpp:71:59: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 71 | unique_ptr_type u(new this_type(ita,ite,maxn)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testparallelbamvalidation test/testparallelbamvalidation-testparallelbamvalidation.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testparallelbamvalidation test/testparallelbamvalidation-testparallelbamvalidation.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testparallelbamrewrite-testparallelbamrewrite.o `test -f 'test/testparallelbamrewrite.cpp' || echo './'`test/testparallelbamrewrite.cpp In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/bambam/BamAuxFilterVector.hpp:22, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:27, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/parallel/PushBackSpace.hpp:22, from ./libmaus2/bambam/parallel/AlignmentBuffer.hpp:22, from ./libmaus2/bambam/parallel/FragmentAlignmentBufferRewriteUpdateInterval.hpp:22, from test/testparallelbamrewrite.cpp:20: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/bambam/CigarStringParser.hpp:25, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ In file included from ./libmaus2/bambam/parallel/ParseInfo.hpp:22, from test/testparallelbamrewrite.cpp:54: ./libmaus2/bambam/BamHeaderLowMem.hpp: In member function ‘void libmaus2::bambam::BamHeaderLowMem::setupFromText()’: ./libmaus2/bambam/BamHeaderLowMem.hpp:366:58: warning: variable ‘ln’ set but not used [-Wunused-but-set-variable=] 366 | uint64_t ln = 0; | ^~ In file included from /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/16/algorithm:63, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h: In function ‘constexpr void std::__pop_heap(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Compare = libmaus2::lz::BgzfThreadQueueElementHeapComparator]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:257:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 257 | __pop_heap(_RandomAccessIterator __first, _RandomAccessIterator __last, | ^~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:257:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:257:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h: In function ‘constexpr void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = less]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1884:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1884 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1884:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1898:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1898 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/16/map:64, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:51: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h:3250:7: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 3250 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h: In function ‘constexpr void std::__pop_heap(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Compare = libmaus2::bambam::parallel::DecompressedPendingObjectHeapComparator]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:257:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 257 | __pop_heap(_RandomAccessIterator __first, _RandomAccessIterator __last, | ^~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:257:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:257:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 In function ‘constexpr void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = less]’, inlined from ‘constexpr void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:4817:18, inlined from ‘void libmaus2::trie::LinearHashTrie<_char_type, _id_type>::fillDepthParent() [with _char_type = char; _id_type = unsigned int]’ at ./libmaus2/trie/TrieState.hpp:261:14: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1913:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1913 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1914 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1915 | __comp); | ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h:3250:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 3250 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ./libmaus2/bambam/BamHeader.hpp:36, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:30: ./libmaus2/hashing/ConstantStringHash.hpp: In constructor ‘libmaus2::hashing::ConstantStringHash::ConstantStringHash(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]’: ./libmaus2/hashing/ConstantStringHash.hpp:96:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 96 | ConstantStringHash(iterator ita, iterator ite, uint64_t const maxn = 64*1024) | ^~~~~~~~~~~~~~~~~~ ./libmaus2/hashing/ConstantStringHash.hpp:96:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h: In function ‘constexpr void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = libmaus2::bambam::parallel::WritePendingObject; _Compare = libmaus2::bambam::parallel::WritePendingObjectHeapComparator]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:229:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 229 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In function ‘constexpr void std::pop_heap(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator > >; _Compare = libmaus2::bambam::parallel::DecompressedPendingObjectHeapComparator]’, inlined from ‘void std::priority_queue<_Tp, _Sequence, _Compare>::pop() [with _Tp = libmaus2::bambam::parallel::DecompressedPendingObject; _Sequence = std::vector >; _Compare = libmaus2::bambam::parallel::DecompressedPendingObjectHeapComparator]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_queue.h:894:15, inlined from ‘libmaus2::parallel::LockedHeap<_value_type, _comparator_type>::value_type libmaus2::parallel::LockedHeap<_value_type, _comparator_type>::pop() [with _value_type = libmaus2::bambam::parallel::DecompressedPendingObject; _comparator_type = libmaus2::bambam::parallel::DecompressedPendingObjectHeapComparator]’ at ./libmaus2/parallel/LockedHeap.hpp:69:10, inlined from ‘void libmaus2::bambam::parallel::RewriteControl::checkParsePendingList()’ at test/testparallelbamrewrite.cpp:586:56: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:334:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 334 | std::__pop_heap(__first, __last, __last, __comp); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘constexpr void std::pop_heap(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator > >; _Compare = libmaus2::bambam::parallel::DecompressedPendingObjectHeapComparator]’, inlined from ‘void std::priority_queue<_Tp, _Sequence, _Compare>::pop() [with _Tp = libmaus2::bambam::parallel::DecompressedPendingObject; _Sequence = std::vector >; _Compare = libmaus2::bambam::parallel::DecompressedPendingObjectHeapComparator]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_queue.h:894:15, inlined from ‘libmaus2::parallel::LockedHeap<_value_type, _comparator_type>::value_type libmaus2::parallel::LockedHeap<_value_type, _comparator_type>::pop() [with _value_type = libmaus2::bambam::parallel::DecompressedPendingObject; _comparator_type = libmaus2::bambam::parallel::DecompressedPendingObjectHeapComparator]’ at ./libmaus2/parallel/LockedHeap.hpp:69:10, inlined from ‘void libmaus2::bambam::parallel::RewriteControl::checkParsePendingList()’ at test/testparallelbamrewrite.cpp:612:56: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:334:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 334 | std::__pop_heap(__first, __last, __last, __comp); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/16/map:65: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = bool; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void libmaus2::bambam::parallel::RewriteControl::putParsedBlockAddPending(libmaus2::bambam::parallel::AlignmentBuffer::shared_ptr_type)’ at test/testparallelbamrewrite.cpp:692:28: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘void libmaus2::bambam::parallel::RewriteControl::checkLargeBlockCompressionPending()’ at test/testparallelbamrewrite.cpp:909:35: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘void libmaus2::bambam::parallel::RewriteControl::checkValidatedRewritePending()’ at test/testparallelbamrewrite.cpp:1033:55: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = bool; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void libmaus2::bambam::parallel::RewriteControl::validateBlockFragmentFinished(libmaus2::bambam::parallel::ValidationFragment&, bool)’ at test/testparallelbamrewrite.cpp:1076:53: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = bool; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void libmaus2::bambam::parallel::RewriteControl::validateBlockFragmentFinished(libmaus2::bambam::parallel::ValidationFragment&, bool)’ at test/testparallelbamrewrite.cpp:1076:28: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In function ‘constexpr void std::pop_heap(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator > >; _Compare = libmaus2::lz::BgzfThreadQueueElementHeapComparator]’, inlined from ‘void std::priority_queue<_Tp, _Sequence, _Compare>::pop() [with _Tp = libmaus2::lz::BgzfThreadQueueElement; _Sequence = std::vector >; _Compare = libmaus2::lz::BgzfThreadQueueElementHeapComparator]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_queue.h:894:15, inlined from ‘libmaus2::parallel::StdTerminatableSynchronousHeap<_value_type, _compare>::value_type libmaus2::parallel::StdTerminatableSynchronousHeap<_value_type, _compare>::deque() [with _value_type = libmaus2::lz::BgzfThreadQueueElement; _compare = libmaus2::lz::BgzfThreadQueueElementHeapComparator]’ at ./libmaus2/parallel/StdTerminatableSynchronousHeap.hpp:117:12, inlined from ‘virtual void libmaus2::lz::BgzfInflateParallelThreadCallable::run()’ at ./libmaus2/lz/BgzfInflateParallelThread.hpp:59:54: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:334:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 334 | std::__pop_heap(__first, __last, __last, __comp); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘constexpr void std::pop_heap(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator > >; _Compare = libmaus2::lz::BgzfThreadQueueElementHeapComparator]’, inlined from ‘void std::priority_queue<_Tp, _Sequence, _Compare>::pop() [with _Tp = libmaus2::lz::BgzfThreadQueueElement; _Sequence = std::vector >; _Compare = libmaus2::lz::BgzfThreadQueueElementHeapComparator]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_queue.h:894:15, inlined from ‘libmaus2::parallel::StdTerminatableSynchronousHeap<_value_type, _compare>::value_type libmaus2::parallel::StdTerminatableSynchronousHeap<_value_type, _compare>::deque() [with _value_type = libmaus2::lz::BgzfThreadQueueElement; _compare = libmaus2::lz::BgzfThreadQueueElementHeapComparator]’ at ./libmaus2/parallel/StdTerminatableSynchronousHeap.hpp:117:12, inlined from ‘virtual void libmaus2::lz::BgzfInflateDeflateParallelThreadCallable::run()’ at ./libmaus2/lz/BgzfInflateDeflateParallelThread.hpp:297:54: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:334:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 334 | std::__pop_heap(__first, __last, __last, __comp); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘constexpr void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = less]’, inlined from ‘constexpr void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:4817:18, inlined from ‘void libmaus2::bambam::BamHeaderLowMem::setupFromText()’ at ./libmaus2/bambam/BamHeaderLowMem.hpp:737:16: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1913:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1913 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1914 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1915 | __comp); | ~~~~~~~ In static member function ‘static libmaus2::hashing::ConstantStringHash::unique_ptr_type libmaus2::hashing::ConstantStringHash::construct(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]’, inlined from ‘void libmaus2::bambam::BamHeaderLowMem::setupFromText()’ at ./libmaus2/bambam/BamHeaderLowMem.hpp:788:5: ./libmaus2/hashing/ConstantStringHash.hpp:71:59: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 71 | unique_ptr_type u(new this_type(ita,ite,maxn)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testparallelbamrewrite test/testparallelbamrewrite-testparallelbamrewrite.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testparallelbamrewrite test/testparallelbamrewrite-testparallelbamrewrite.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testbammateerase-testbammateerase.o `test -f 'test/testbammateerase.cpp' || echo './'`test/testbammateerase.cpp In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/bambam/BamAuxFilterVector.hpp:22, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:27, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from test/testbammateerase.cpp:20: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/bambam/CigarStringParser.hpp:25, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ In file included from ./libmaus2/bambam/BamAlignmentDecoder.hpp:24: ./libmaus2/bambam/BamHeaderLowMem.hpp: In member function ‘void libmaus2::bambam::BamHeaderLowMem::setupFromText()’: ./libmaus2/bambam/BamHeaderLowMem.hpp:366:58: warning: variable ‘ln’ set but not used [-Wunused-but-set-variable=] 366 | uint64_t ln = 0; | ^~ In file included from /usr/arm-linux-gnueabihf/include/c++/16/algorithm:63, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h: In function ‘constexpr void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = less]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1884:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1884 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1884:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1898:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1898 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘constexpr void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = less]’, inlined from ‘constexpr void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:4817:18, inlined from ‘void libmaus2::trie::LinearHashTrie<_char_type, _id_type>::fillDepthParent() [with _char_type = char; _id_type = unsigned int]’ at ./libmaus2/trie/TrieState.hpp:261:14: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1913:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1913 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1914 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1915 | __comp); | ~~~~~~~ In file included from ./libmaus2/bambam/BamHeader.hpp:36, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:30: ./libmaus2/hashing/ConstantStringHash.hpp: In constructor ‘libmaus2::hashing::ConstantStringHash::ConstantStringHash(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]’: ./libmaus2/hashing/ConstantStringHash.hpp:96:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 96 | ConstantStringHash(iterator ita, iterator ite, uint64_t const maxn = 64*1024) | ^~~~~~~~~~~~~~~~~~ ./libmaus2/hashing/ConstantStringHash.hpp:96:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In static member function ‘static libmaus2::hashing::ConstantStringHash::shared_ptr_type libmaus2::hashing::ConstantStringHash::constructShared(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]’, inlined from ‘void libmaus2::bambam::BamHeader::initSetup()’ at ./libmaus2/bambam/BamHeader.hpp:965:67: ./libmaus2/hashing/ConstantStringHash.hpp:86:59: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 86 | shared_ptr_type s(new this_type(ita,ite,maxn)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testbammateerase test/testbammateerase-testbammateerase.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testbammateerase test/testbammateerase-testbammateerase.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testparallelbamblocksort-testparallelbamblocksort.o `test -f 'test/testparallelbamblocksort.cpp' || echo './'`test/testparallelbamblocksort.cpp In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/bambam/BamAuxFilterVector.hpp:22, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:27, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamNumericalIndexGenerator.hpp:24, from ./libmaus2/bambam/parallel/BlockMergeControl.hpp:24, from test/testparallelbamblocksort.cpp:19: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/bambam/CigarStringParser.hpp:25, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ In file included from ./libmaus2/bambam/parallel/GenericInputSingleDataBamParseInfo.hpp:23, from ./libmaus2/bambam/parallel/GenericInputSingleData.hpp:30, from ./libmaus2/bambam/parallel/GenericInputControlReadWorkPackage.hpp:22, from ./libmaus2/bambam/parallel/GenericInputControlReadWorkPackageReturnInterface.hpp:22, from ./libmaus2/bambam/parallel/GenericInputControlReadWorkPackageDispatcher.hpp:22, from ./libmaus2/bambam/parallel/BlockMergeControl.hpp:36: ./libmaus2/bambam/BamHeaderLowMem.hpp: In member function ‘void libmaus2::bambam::BamHeaderLowMem::setupFromText()’: ./libmaus2/bambam/BamHeaderLowMem.hpp:366:58: warning: variable ‘ln’ set but not used [-Wunused-but-set-variable=] 366 | uint64_t ln = 0; | ^~ In file included from ./libmaus2/bambam/ReadEndsBlockDecoderBase.hpp:31, from ./libmaus2/bambam/ReadEndsContainer.hpp:34, from ./libmaus2/bambam/parallel/ReadEndsContainerFreeListInterface.hpp:22, from ./libmaus2/bambam/parallel/FragmentAlignmentBufferRewriteReadEndsWorkPackageDispatcher.hpp:28, from ./libmaus2/bambam/parallel/BlockSortControl.hpp:37, from test/testparallelbamblocksort.cpp:20: ./libmaus2/index/ExternalMemoryIndexDecoder.hpp: In instantiation of ‘void libmaus2::index::ExternalMemoryIndexDecoder<_data_type, _base_level_log, _inner_level_log, _comparator>::setup(uint64_t) [with _data_type = libmaus2::bambam::ReadEndsBase; unsigned int _base_level_log = 9; unsigned int _inner_level_log = 2; _comparator = std::less; uint64_t = long long unsigned int]’: ./libmaus2/index/ExternalMemoryIndexDecoder.hpp:189:5: required from ‘libmaus2::index::ExternalMemoryIndexDecoder<_data_type, _base_level_log, _inner_level_log, _comparator>::ExternalMemoryIndexDecoder(std::istream&, uint64_t) [with _data_type = libmaus2::bambam::ReadEndsBase; unsigned int _base_level_log = 9; unsigned int _inner_level_log = 2; _comparator = std::less; std::istream = std::basic_istream; uint64_t = long long unsigned int]’ 189 | setup(rcache_thres); | ^~~~~ ./libmaus2/bambam/ReadEndsBlockIndexSet.hpp:107:34: required from here 107 | new index_decoder_type(str) | ^ ./libmaus2/index/ExternalMemoryIndexDecoder.hpp:99:46: warning: variable ‘numcache’ set but not used [-Wunused-but-set-variable=] 99 | unsigned int numcache = 0; | ^~~~~~~~ ./libmaus2/index/ExternalMemoryIndexDecoder.hpp: In instantiation of ‘void libmaus2::index::ExternalMemoryIndexDecoder<_data_type, _base_level_log, _inner_level_log, _comparator>::setup(uint64_t) [with _data_type = libmaus2::bambam::ReadEndsBase; unsigned int _base_level_log = 9; unsigned int _inner_level_log = 2; _comparator = libmaus2::bambam::ReadEndsBaseShortHashAttributeComparator; uint64_t = long long unsigned int]’: ./libmaus2/index/ExternalMemoryIndexDecoder.hpp:189:5: required from ‘libmaus2::index::ExternalMemoryIndexDecoder<_data_type, _base_level_log, _inner_level_log, _comparator>::ExternalMemoryIndexDecoder(std::istream&, uint64_t) [with _data_type = libmaus2::bambam::ReadEndsBase; unsigned int _base_level_log = 9; unsigned int _inner_level_log = 2; _comparator = libmaus2::bambam::ReadEndsBaseShortHashAttributeComparator; std::istream = std::basic_istream; uint64_t = long long unsigned int]’ 189 | setup(rcache_thres); | ^~~~~ ./libmaus2/bambam/ReadEndsBlockDecoderBaseCollection.hpp:486:45: required from ‘static std::vector > > libmaus2::bambam::ReadEndsBlockDecoderBaseCollection<_proxy>::getShortMergeIntervals(const std::vector&, uint64_t, bool) [with bool _proxy = true; uint64_t = long long unsigned int]’ 486 | short_index_decoder_pointer_type tptr(new short_index_decoder_type(*Pindexstreams[i],cacheperdec)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/bambam/parallel/BlockSortControl.hpp:1387:89: required from ‘void libmaus2::bambam::parallel::BlockSortControl<_order_type, _create_dup_mark_info>::enqueMergeFragReadEndsLists(libmaus2::parallel::StdSemaphore::shared_ptr_type) [with _order_type = libmaus2::bambam::parallel::FragmentAlignmentBufferQueryNameComparator; bool _create_dup_mark_info = false; libmaus2::parallel::StdSemaphore::shared_ptr_type = std::shared_ptr]’ 1387 | libmaus2::bambam::ReadEndsBlockDecoderBaseCollection::getShortMergeIntervals(*MI,STP.getNumThreads(),false /* check */); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/bambam/parallel/BlockSortControl.hpp:1891:6: required from ‘void libmaus2::bambam::parallel::BlockSortControl<_order_type, _create_dup_mark_info>::mergeReadEndsLists(std::ostream&, std::string) [with _order_type = libmaus2::bambam::parallel::FragmentAlignmentBufferQueryNameComparator; bool _create_dup_mark_info = false; std::ostream = std::basic_ostream; std::string = std::__cxx11::basic_string]’ 1891 | enqueMergeFragReadEndsLists(psem); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ test/testparallelbamblocksort.cpp:129:25: required from ‘int parallelbamblocksort(const libmaus2::util::ArgInfo&, bool, bool, const std::string&, bool) [with order_type = libmaus2::bambam::parallel::FragmentAlignmentBufferQueryNameComparator; heap_element_type = libmaus2::bambam::parallel::GenericInputControlMergeHeapEntryQueryName; bool create_dup_mark_info = false; std::string = std::__cxx11::basic_string]’ 129 | VC->mergeReadEndsLists(std::cerr /* metrics stream */,"testparallelbamblocksort"); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ test/testparallelbamblocksort.cpp:257:38: required from here 254 | r = parallelbamblocksort< | ~~~~~~~~~~~~~~~~~~~~~ 255 | libmaus2::bambam::parallel::FragmentAlignmentBufferQueryNameComparator, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 | libmaus2::bambam::parallel::GenericInputControlMergeHeapEntryQueryName, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 | false /* create dup mark info */>(arginfo,false /* fix mates */,false /* dup mark support */, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 | "queryname", | ~~~~~~~~~~~~ 259 | false /* bam index */ | ~~~~~~~~~~~~~~~~~~~~~ 260 | ); | ~ ./libmaus2/index/ExternalMemoryIndexDecoder.hpp:99:46: warning: variable ‘numcache’ set but not used [-Wunused-but-set-variable=] 99 | unsigned int numcache = 0; | ^~~~~~~~ ./libmaus2/index/ExternalMemoryIndexDecoder.hpp: In instantiation of ‘void libmaus2::index::ExternalMemoryIndexDecoder<_data_type, _base_level_log, _inner_level_log, _comparator>::setup(uint64_t) [with _data_type = libmaus2::bambam::ReadEndsBase; unsigned int _base_level_log = 9; unsigned int _inner_level_log = 2; _comparator = libmaus2::bambam::ReadEndsBaseLongHashAttributeComparator; uint64_t = long long unsigned int]’: ./libmaus2/index/ExternalMemoryIndexDecoder.hpp:189:5: required from ‘libmaus2::index::ExternalMemoryIndexDecoder<_data_type, _base_level_log, _inner_level_log, _comparator>::ExternalMemoryIndexDecoder(std::istream&, uint64_t) [with _data_type = libmaus2::bambam::ReadEndsBase; unsigned int _base_level_log = 9; unsigned int _inner_level_log = 2; _comparator = libmaus2::bambam::ReadEndsBaseLongHashAttributeComparator; std::istream = std::basic_istream; uint64_t = long long unsigned int]’ 189 | setup(rcache_thres); | ^~~~~ ./libmaus2/bambam/ReadEndsBlockDecoderBaseCollection.hpp:926:44: required from ‘static std::vector > > libmaus2::bambam::ReadEndsBlockDecoderBaseCollection<_proxy>::getLongMergeIntervals(const std::vector&, uint64_t, bool) [with bool _proxy = true; uint64_t = long long unsigned int]’ 926 | long_index_decoder_pointer_type tptr(new long_index_decoder_type(*Pindexstreams[i],cacheperdec)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/bambam/parallel/BlockSortControl.hpp:1452:88: required from ‘void libmaus2::bambam::parallel::BlockSortControl<_order_type, _create_dup_mark_info>::enqueMergePairReadEndsLists(libmaus2::parallel::StdSemaphore::shared_ptr_type) [with _order_type = libmaus2::bambam::parallel::FragmentAlignmentBufferQueryNameComparator; bool _create_dup_mark_info = false; libmaus2::parallel::StdSemaphore::shared_ptr_type = std::shared_ptr]’ 1452 | libmaus2::bambam::ReadEndsBlockDecoderBaseCollection::getLongMergeIntervals(*MI,STP.getNumThreads(),false /* check */); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/bambam/parallel/BlockSortControl.hpp:1903:6: required from ‘void libmaus2::bambam::parallel::BlockSortControl<_order_type, _create_dup_mark_info>::mergeReadEndsLists(std::ostream&, std::string) [with _order_type = libmaus2::bambam::parallel::FragmentAlignmentBufferQueryNameComparator; bool _create_dup_mark_info = false; std::ostream = std::basic_ostream; std::string = std::__cxx11::basic_string]’ 1903 | enqueMergePairReadEndsLists(psem); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ test/testparallelbamblocksort.cpp:129:25: required from ‘int parallelbamblocksort(const libmaus2::util::ArgInfo&, bool, bool, const std::string&, bool) [with order_type = libmaus2::bambam::parallel::FragmentAlignmentBufferQueryNameComparator; heap_element_type = libmaus2::bambam::parallel::GenericInputControlMergeHeapEntryQueryName; bool create_dup_mark_info = false; std::string = std::__cxx11::basic_string]’ 129 | VC->mergeReadEndsLists(std::cerr /* metrics stream */,"testparallelbamblocksort"); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ test/testparallelbamblocksort.cpp:257:38: required from here 254 | r = parallelbamblocksort< | ~~~~~~~~~~~~~~~~~~~~~ 255 | libmaus2::bambam::parallel::FragmentAlignmentBufferQueryNameComparator, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 | libmaus2::bambam::parallel::GenericInputControlMergeHeapEntryQueryName, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 | false /* create dup mark info */>(arginfo,false /* fix mates */,false /* dup mark support */, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 | "queryname", | ~~~~~~~~~~~~ 259 | false /* bam index */ | ~~~~~~~~~~~~~~~~~~~~~ 260 | ); | ~ ./libmaus2/index/ExternalMemoryIndexDecoder.hpp:99:46: warning: variable ‘numcache’ set but not used [-Wunused-but-set-variable=] 99 | unsigned int numcache = 0; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/16/algorithm:63, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/aio/Buffer.hpp:22, from ./libmaus2/bambam/BamNumericalIndexGenerator.hpp:22: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h: In function ‘constexpr void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = less]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1884:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1884 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1884:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1898:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1898 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/16/map:64, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:51: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h:3250:7: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 3250 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h:3250:7: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h:3250:7: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:61: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h: In function ‘constexpr void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Distance = int; _Tp = pair; _Compare = libmaus2::bambam::ReadEndsHeapPairComparator]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:141:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 141 | __push_heap(_RandomAccessIterator __first, | ^~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h: In function ‘constexpr void std::__pop_heap(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Compare = libmaus2::bambam::parallel::DecompressedPendingObjectHeapComparator]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:257:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 257 | __pop_heap(_RandomAccessIterator __first, _RandomAccessIterator __last, | ^~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:257:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:257:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 In function ‘constexpr void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = less]’, inlined from ‘constexpr void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:4817:18, inlined from ‘void libmaus2::trie::LinearHashTrie<_char_type, _id_type>::fillDepthParent() [with _char_type = char; _id_type = unsigned int]’ at ./libmaus2/trie/TrieState.hpp:261:14: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1913:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1913 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1914 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1915 | __comp); | ~~~~~~~ In file included from ./libmaus2/bambam/BamHeader.hpp:36, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:30: ./libmaus2/hashing/ConstantStringHash.hpp: In constructor ‘libmaus2::hashing::ConstantStringHash::ConstantStringHash(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]’: ./libmaus2/hashing/ConstantStringHash.hpp:96:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 96 | ConstantStringHash(iterator ita, iterator ite, uint64_t const maxn = 64*1024) | ^~~~~~~~~~~~~~~~~~ ./libmaus2/hashing/ConstantStringHash.hpp:96:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 ./libmaus2/hashing/ConstantStringHash.hpp: In constructor ‘libmaus2::hashing::ConstantStringHash::ConstantStringHash(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]’: ./libmaus2/hashing/ConstantStringHash.hpp:96:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 ./libmaus2/hashing/ConstantStringHash.hpp:96:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h: In function ‘constexpr void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Distance = int; _Tp = pair; _Compare = libmaus2::bambam::ReadEndsHeapPairComparator]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:229:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 229 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h: In function ‘constexpr void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = libmaus2::bambam::OpticalComparator]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1770:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1770 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1770:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In static member function ‘static libmaus2::hashing::ConstantStringHash::shared_ptr_type libmaus2::hashing::ConstantStringHash::constructShared(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]’, inlined from ‘void libmaus2::bambam::BamHeader::initSetup()’ at ./libmaus2/bambam/BamHeader.hpp:965:67: ./libmaus2/hashing/ConstantStringHash.hpp:86:59: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 86 | shared_ptr_type s(new this_type(ita,ite,maxn)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘constexpr void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = less]’, inlined from ‘constexpr void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:4817:18, inlined from ‘void libmaus2::bambam::BamHeaderLowMem::setupFromText()’ at ./libmaus2/bambam/BamHeaderLowMem.hpp:737:16: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1913:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1913 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1914 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1915 | __comp); | ~~~~~~~ In static member function ‘static libmaus2::hashing::ConstantStringHash::unique_ptr_type libmaus2::hashing::ConstantStringHash::construct(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]’, inlined from ‘void libmaus2::bambam::BamHeaderLowMem::setupFromText()’ at ./libmaus2/bambam/BamHeaderLowMem.hpp:788:5: ./libmaus2/hashing/ConstantStringHash.hpp:71:59: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 71 | unique_ptr_type u(new this_type(ita,ite,maxn)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h: In function ‘constexpr void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = libmaus2::bambam::ReadEnds; _Compare = libmaus2::bambam::OpticalComparator]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:229:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 229 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h: In function ‘constexpr void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = libmaus2::bambam::OpticalComparator]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1884:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1884 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1884:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1898:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1898 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘constexpr void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = libmaus2::bambam::OpticalComparator]’, inlined from ‘constexpr void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = libmaus2::bambam::OpticalComparator]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:4849:18, inlined from ‘static uint64_t libmaus2::bambam::DupMarkBase::markDuplicatePairsOpt(iterator, iterator, libmaus2::bambam::DupSetCallback&, unsigned int, MarkOptical*, MarkOpticalDistance*) [with iterator = __gnu_cxx::__normal_iterator >; projector = MarkDuplicateProjectorIdentity; bool bmarkopt = false; bool dmarkopt = false]’ at ./libmaus2/bambam/DupMarkBase.hpp:139:16, inlined from ‘static uint64_t libmaus2::bambam::DupMarkBase::markDuplicatePairs(iterator, iterator, libmaus2::bambam::DupSetCallback&, unsigned int) [with iterator = __gnu_cxx::__normal_iterator >; projector = MarkDuplicateProjectorIdentity]’ at ./libmaus2/bambam/DupMarkBase.hpp:349:95, inlined from ‘static uint64_t libmaus2::bambam::DupMarkBase::markDuplicatePairsVector(std::vector&, libmaus2::bambam::DupSetCallback&, unsigned int)’ at ./libmaus2/bambam/DupMarkBase.hpp:419:112, inlined from ‘static uint64_t libmaus2::bambam::DupMarkBase::markDuplicatePairs(std::vector&, libmaus2::bambam::DupSetCallback&, unsigned int)’ at ./libmaus2/bambam/DupMarkBase.hpp:493:36: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1913:32: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 1913 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1914 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1915 | __comp); | ~~~~~~~ In function ‘constexpr void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = libmaus2::bambam::OpticalComparator]’, inlined from ‘constexpr void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = libmaus2::bambam::OpticalComparator]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1916:31, inlined from ‘constexpr void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = libmaus2::bambam::OpticalComparator]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:4849:18, inlined from ‘static uint64_t libmaus2::bambam::DupMarkBase::markDuplicatePairsOpt(iterator, iterator, libmaus2::bambam::DupSetCallback&, unsigned int, MarkOptical*, MarkOpticalDistance*) [with iterator = __gnu_cxx::__normal_iterator >; projector = MarkDuplicateProjectorIdentity; bool bmarkopt = false; bool dmarkopt = false]’ at ./libmaus2/bambam/DupMarkBase.hpp:139:16, inlined from ‘static uint64_t libmaus2::bambam::DupMarkBase::markDuplicatePairs(iterator, iterator, libmaus2::bambam::DupSetCallback&, unsigned int) [with iterator = __gnu_cxx::__normal_iterator >; projector = MarkDuplicateProjectorIdentity]’ at ./libmaus2/bambam/DupMarkBase.hpp:349:95, inlined from ‘static uint64_t libmaus2::bambam::DupMarkBase::markDuplicatePairsVector(std::vector&, libmaus2::bambam::DupSetCallback&, unsigned int)’ at ./libmaus2/bambam/DupMarkBase.hpp:419:112, inlined from ‘static uint64_t libmaus2::bambam::DupMarkBase::markDuplicatePairs(std::vector&, libmaus2::bambam::DupSetCallback&, unsigned int)’ at ./libmaus2/bambam/DupMarkBase.hpp:493:36: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1821:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1821 | std::__insertion_sort(__first, __first + __threshold, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1826:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1826 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h:3250:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 3250 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/16/map:65: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = bool; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘void libmaus2::bambam::parallel::BlockSortControl<_order_type, _create_dup_mark_info>::putParsedBlockAddPending(libmaus2::bambam::parallel::AlignmentBuffer::shared_ptr_type) [with _order_type = libmaus2::bambam::parallel::FragmentAlignmentBufferPosComparator; bool _create_dup_mark_info = true]’ at ./libmaus2/bambam/parallel/BlockSortControl.hpp:2265:30: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = bool; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘void libmaus2::bambam::parallel::BlockSortControl<_order_type, _create_dup_mark_info>::putParsedBlockAddPending(libmaus2::bambam::parallel::AlignmentBuffer::shared_ptr_type) [with _order_type = libmaus2::bambam::parallel::FragmentAlignmentBufferQueryNameComparator; bool _create_dup_mark_info = false]’ at ./libmaus2/bambam/parallel/BlockSortControl.hpp:2265:30: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In function ‘constexpr void std::pop_heap(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator > >; _Compare = libmaus2::bambam::parallel::DecompressedPendingObjectHeapComparator]’, inlined from ‘void std::priority_queue<_Tp, _Sequence, _Compare>::pop() [with _Tp = libmaus2::bambam::parallel::DecompressedPendingObject; _Sequence = std::vector >; _Compare = libmaus2::bambam::parallel::DecompressedPendingObjectHeapComparator]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_queue.h:894:15, inlined from ‘libmaus2::parallel::LockedHeap<_value_type, _comparator_type>::value_type libmaus2::parallel::LockedHeap<_value_type, _comparator_type>::pop() [with _value_type = libmaus2::bambam::parallel::DecompressedPendingObject; _comparator_type = libmaus2::bambam::parallel::DecompressedPendingObjectHeapComparator]’ at ./libmaus2/parallel/LockedHeap.hpp:69:10, inlined from ‘void libmaus2::bambam::parallel::BlockSortControl<_order_type, _create_dup_mark_info>::checkParsePendingList() [with _order_type = libmaus2::bambam::parallel::FragmentAlignmentBufferPosComparator; bool _create_dup_mark_info = true]’ at ./libmaus2/bambam/parallel/BlockSortControl.hpp:2145:33: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:334:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 334 | std::__pop_heap(__first, __last, __last, __comp); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘constexpr void std::pop_heap(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator > >; _Compare = libmaus2::bambam::parallel::DecompressedPendingObjectHeapComparator]’, inlined from ‘void std::priority_queue<_Tp, _Sequence, _Compare>::pop() [with _Tp = libmaus2::bambam::parallel::DecompressedPendingObject; _Sequence = std::vector >; _Compare = libmaus2::bambam::parallel::DecompressedPendingObjectHeapComparator]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_queue.h:894:15, inlined from ‘libmaus2::parallel::LockedHeap<_value_type, _comparator_type>::value_type libmaus2::parallel::LockedHeap<_value_type, _comparator_type>::pop() [with _value_type = libmaus2::bambam::parallel::DecompressedPendingObject; _comparator_type = libmaus2::bambam::parallel::DecompressedPendingObjectHeapComparator]’ at ./libmaus2/parallel/LockedHeap.hpp:69:10, inlined from ‘void libmaus2::bambam::parallel::BlockSortControl<_order_type, _create_dup_mark_info>::checkParsePendingList() [with _order_type = libmaus2::bambam::parallel::FragmentAlignmentBufferPosComparator; bool _create_dup_mark_info = true]’ at ./libmaus2/bambam/parallel/BlockSortControl.hpp:2172:33: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:334:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 334 | std::__pop_heap(__first, __last, __last, __comp); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘constexpr void std::pop_heap(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator > >; _Compare = libmaus2::bambam::parallel::DecompressedPendingObjectHeapComparator]’, inlined from ‘void std::priority_queue<_Tp, _Sequence, _Compare>::pop() [with _Tp = libmaus2::bambam::parallel::DecompressedPendingObject; _Sequence = std::vector >; _Compare = libmaus2::bambam::parallel::DecompressedPendingObjectHeapComparator]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_queue.h:894:15, inlined from ‘libmaus2::parallel::LockedHeap<_value_type, _comparator_type>::value_type libmaus2::parallel::LockedHeap<_value_type, _comparator_type>::pop() [with _value_type = libmaus2::bambam::parallel::DecompressedPendingObject; _comparator_type = libmaus2::bambam::parallel::DecompressedPendingObjectHeapComparator]’ at ./libmaus2/parallel/LockedHeap.hpp:69:10, inlined from ‘void libmaus2::bambam::parallel::BlockSortControl<_order_type, _create_dup_mark_info>::checkParsePendingList() [with _order_type = libmaus2::bambam::parallel::FragmentAlignmentBufferQueryNameComparator; bool _create_dup_mark_info = false]’ at ./libmaus2/bambam/parallel/BlockSortControl.hpp:2145:33: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:334:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 334 | std::__pop_heap(__first, __last, __last, __comp); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘constexpr void std::pop_heap(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator > >; _Compare = libmaus2::bambam::parallel::DecompressedPendingObjectHeapComparator]’, inlined from ‘void std::priority_queue<_Tp, _Sequence, _Compare>::pop() [with _Tp = libmaus2::bambam::parallel::DecompressedPendingObject; _Sequence = std::vector >; _Compare = libmaus2::bambam::parallel::DecompressedPendingObjectHeapComparator]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_queue.h:894:15, inlined from ‘libmaus2::parallel::LockedHeap<_value_type, _comparator_type>::value_type libmaus2::parallel::LockedHeap<_value_type, _comparator_type>::pop() [with _value_type = libmaus2::bambam::parallel::DecompressedPendingObject; _comparator_type = libmaus2::bambam::parallel::DecompressedPendingObjectHeapComparator]’ at ./libmaus2/parallel/LockedHeap.hpp:69:10, inlined from ‘void libmaus2::bambam::parallel::BlockSortControl<_order_type, _create_dup_mark_info>::checkParsePendingList() [with _order_type = libmaus2::bambam::parallel::FragmentAlignmentBufferQueryNameComparator; bool _create_dup_mark_info = false]’ at ./libmaus2/bambam/parallel/BlockSortControl.hpp:2172:33: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:334:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 334 | std::__pop_heap(__first, __last, __last, __comp); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘void libmaus2::bambam::parallel::BlockSortControl<_order_type, _create_dup_mark_info>::checkPostSortPendingQueue() [with _order_type = libmaus2::bambam::parallel::FragmentAlignmentBufferPosComparator; bool _create_dup_mark_info = true]’ at ./libmaus2/bambam/parallel/BlockSortControl.hpp:2695:37: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘void libmaus2::bambam::parallel::BlockSortControl<_order_type, _create_dup_mark_info>::checkPostSortPendingQueue() [with _order_type = libmaus2::bambam::parallel::FragmentAlignmentBufferPosComparator; bool _create_dup_mark_info = true]’ at ./libmaus2/bambam/parallel/BlockSortControl.hpp:2696:38: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘void libmaus2::bambam::parallel::BlockSortControl<_order_type, _create_dup_mark_info>::checkPostSortPendingQueue() [with _order_type = libmaus2::bambam::parallel::FragmentAlignmentBufferQueryNameComparator; bool _create_dup_mark_info = false]’ at ./libmaus2/bambam/parallel/BlockSortControl.hpp:2695:37: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘void libmaus2::bambam::parallel::BlockSortControl<_order_type, _create_dup_mark_info>::checkPostSortPendingQueue() [with _order_type = libmaus2::bambam::parallel::FragmentAlignmentBufferQueryNameComparator; bool _create_dup_mark_info = false]’ at ./libmaus2/bambam/parallel/BlockSortControl.hpp:2696:38: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘void libmaus2::bambam::parallel::BlockSortControl<_order_type, _create_dup_mark_info>::checkLargeBlockCompressionPending() [with _order_type = libmaus2::bambam::parallel::FragmentAlignmentBufferPosComparator; bool _create_dup_mark_info = true]’ at ./libmaus2/bambam/parallel/BlockSortControl.hpp:2557:39: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘void libmaus2::bambam::parallel::BlockSortControl<_order_type, _create_dup_mark_info>::checkLargeBlockCompressionPending() [with _order_type = libmaus2::bambam::parallel::FragmentAlignmentBufferQueryNameComparator; bool _create_dup_mark_info = false]’ at ./libmaus2/bambam/parallel/BlockSortControl.hpp:2557:39: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = bool; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘void libmaus2::bambam::parallel::BlockSortControl<_order_type, _create_dup_mark_info>::validateBlockFragmentFinished(libmaus2::bambam::parallel::ValidationFragment&, bool) [with _order_type = libmaus2::bambam::parallel::FragmentAlignmentBufferPosComparator; bool _create_dup_mark_info = true]’ at ./libmaus2/bambam/parallel/BlockSortControl.hpp:2879:55: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = bool; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘void libmaus2::bambam::parallel::BlockSortControl<_order_type, _create_dup_mark_info>::validateBlockFragmentFinished(libmaus2::bambam::parallel::ValidationFragment&, bool) [with _order_type = libmaus2::bambam::parallel::FragmentAlignmentBufferPosComparator; bool _create_dup_mark_info = true]’ at ./libmaus2/bambam/parallel/BlockSortControl.hpp:2879:30: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = bool; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘void libmaus2::bambam::parallel::BlockSortControl<_order_type, _create_dup_mark_info>::validateBlockFragmentFinished(libmaus2::bambam::parallel::ValidationFragment&, bool) [with _order_type = libmaus2::bambam::parallel::FragmentAlignmentBufferQueryNameComparator; bool _create_dup_mark_info = false]’ at ./libmaus2/bambam/parallel/BlockSortControl.hpp:2879:55: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = bool; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘void libmaus2::bambam::parallel::BlockSortControl<_order_type, _create_dup_mark_info>::validateBlockFragmentFinished(libmaus2::bambam::parallel::ValidationFragment&, bool) [with _order_type = libmaus2::bambam::parallel::FragmentAlignmentBufferQueryNameComparator; bool _create_dup_mark_info = false]’ at ./libmaus2/bambam/parallel/BlockSortControl.hpp:2879:30: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘void libmaus2::bambam::parallel::BlockMergeControl<_heap_element_type>::checkRewriteReorderQueue() [with _heap_element_type = libmaus2::bambam::parallel::GenericInputControlMergeHeapEntryCoordinate]’ at ./libmaus2/bambam/parallel/BlockMergeControl.hpp:1388:53: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘void libmaus2::bambam::parallel::BlockMergeControl<_heap_element_type>::checkRewriteReorderQueue() [with _heap_element_type = libmaus2::bambam::parallel::GenericInputControlMergeHeapEntryCoordinate]’ at ./libmaus2/bambam/parallel/BlockMergeControl.hpp:1442:53: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = long long int; _Tp = std::shared_ptr; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘void libmaus2::bambam::parallel::BlockMergeControl<_heap_element_type>::checkRewriteReorderQueue() [with _heap_element_type = libmaus2::bambam::parallel::GenericInputControlMergeHeapEntryCoordinate]’ at ./libmaus2/bambam/parallel/BlockMergeControl.hpp:1507:41: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:559:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 559 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘void libmaus2::bambam::parallel::BlockMergeControl<_heap_element_type>::checkRewriteReorderQueue() [with _heap_element_type = libmaus2::bambam::parallel::GenericInputControlMergeHeapEntryQueryName]’ at ./libmaus2/bambam/parallel/BlockMergeControl.hpp:1388:53: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘void libmaus2::bambam::parallel::BlockMergeControl<_heap_element_type>::checkRewriteReorderQueue() [with _heap_element_type = libmaus2::bambam::parallel::GenericInputControlMergeHeapEntryQueryName]’ at ./libmaus2/bambam/parallel/BlockMergeControl.hpp:1442:53: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = long long int; _Tp = std::shared_ptr; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘void libmaus2::bambam::parallel::BlockMergeControl<_heap_element_type>::checkRewriteReorderQueue() [with _heap_element_type = libmaus2::bambam::parallel::GenericInputControlMergeHeapEntryQueryName]’ at ./libmaus2/bambam/parallel/BlockMergeControl.hpp:1507:41: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:559:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 559 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -L/lib -Wl,-z,relro -Wl,-z,now -o testparallelbamblocksort test/testparallelbamblocksort-testparallelbamblocksort.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lgmp -lz libtool: link: arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testparallelbamblocksort test/testparallelbamblocksort-testparallelbamblocksort.o -L/lib ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lgmp -lz -fopenmp -pthread arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testmapperm-testmapperm.o `test -f 'test/testmapperm.cpp' || echo './'`test/testmapperm.cpp In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/bambam/BamAuxFilterVector.hpp:22, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:27, from ./libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from ./libmaus2/bambam/BamWriter.hpp:22, from test/testmapperm.cpp:21: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/bambam/CigarStringParser.hpp:25, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testmapperm test/testmapperm-testmapperm.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testmapperm test/testmapperm-testmapperm.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testexternalmemoryindex-testexternalmemoryindex.o `test -f 'test/testexternalmemoryindex.cpp' || echo './'`test/testexternalmemoryindex.cpp In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/bambam/BamAuxFilterVector.hpp:22, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:27, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/ReadEndsBase.hpp:22, from test/testexternalmemoryindex.cpp:22: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/bambam/CigarStringParser.hpp:25, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ In file included from test/testexternalmemoryindex.cpp:20: ./libmaus2/index/ExternalMemoryIndexDecoder.hpp: In instantiation of ‘void libmaus2::index::ExternalMemoryIndexDecoder<_data_type, _base_level_log, _inner_level_log, _comparator>::setup(uint64_t) [with _data_type = SerialisableUint64; unsigned int _base_level_log = 10; unsigned int _inner_level_log = 2; _comparator = std::less; uint64_t = long long unsigned int]’: ./libmaus2/index/ExternalMemoryIndexDecoder.hpp:189:5: required from ‘libmaus2::index::ExternalMemoryIndexDecoder<_data_type, _base_level_log, _inner_level_log, _comparator>::ExternalMemoryIndexDecoder(std::istream&, uint64_t) [with _data_type = SerialisableUint64; unsigned int _base_level_log = 10; unsigned int _inner_level_log = 2; _comparator = std::less; std::istream = std::basic_istream; uint64_t = long long unsigned int]’ 189 | setup(rcache_thres); | ^~~~~ test/testexternalmemoryindex.cpp:106:131: required from here 106 | libmaus2::index::ExternalMemoryIndexDecoder indexdec(indexiostr,(1ull << 20)); | ^ ./libmaus2/index/ExternalMemoryIndexDecoder.hpp:99:46: warning: variable ‘numcache’ set but not used [-Wunused-but-set-variable=] 99 | unsigned int numcache = 0; | ^~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testexternalmemoryindex test/testexternalmemoryindex-testexternalmemoryindex.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testexternalmemoryindex test/testexternalmemoryindex-testexternalmemoryindex.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testfastqtobam-testfastqtobam.o `test -f 'test/testfastqtobam.cpp' || echo './'`test/testfastqtobam.cpp In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/bambam/BamAuxFilterVector.hpp:22, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:27, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/parallel/FastqParsePackageDispatcher.hpp:28, from ./libmaus2/bambam/parallel/FastqToBamControl.hpp:22, from test/testfastqtobam.cpp:22: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/bambam/CigarStringParser.hpp:25, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/16/algorithm:63, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/lz/StreamWrapperBuffer.hpp:23, from ./libmaus2/lz/StreamWrapper.hpp:22, from ./libmaus2/aio/PosixFdInput.hpp:26, from ./libmaus2/aio/PosixFdInputWrapper.hpp:22, from ./libmaus2/aio/PosixFdInputStream.hpp:22, from test/testfastqtobam.cpp:19: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h: In function ‘constexpr void std::__pop_heap(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Compare = libmaus2::lz::BgzfThreadQueueElementHeapComparator]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:257:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 257 | __pop_heap(_RandomAccessIterator __first, _RandomAccessIterator __last, | ^~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:257:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:257:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 In function ‘constexpr void std::pop_heap(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator > >; _Compare = libmaus2::lz::BgzfThreadQueueElementHeapComparator]’, inlined from ‘void std::priority_queue<_Tp, _Sequence, _Compare>::pop() [with _Tp = libmaus2::lz::BgzfThreadQueueElement; _Sequence = std::vector >; _Compare = libmaus2::lz::BgzfThreadQueueElementHeapComparator]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_queue.h:894:15, inlined from ‘libmaus2::parallel::StdTerminatableSynchronousHeap<_value_type, _compare>::value_type libmaus2::parallel::StdTerminatableSynchronousHeap<_value_type, _compare>::deque() [with _value_type = libmaus2::lz::BgzfThreadQueueElement; _compare = libmaus2::lz::BgzfThreadQueueElementHeapComparator]’ at ./libmaus2/parallel/StdTerminatableSynchronousHeap.hpp:117:12, inlined from ‘virtual void libmaus2::lz::BgzfInflateParallelThreadCallable::run()’ at ./libmaus2/lz/BgzfInflateParallelThread.hpp:59:54: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:334:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 334 | std::__pop_heap(__first, __last, __last, __comp); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘constexpr void std::pop_heap(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator > >; _Compare = libmaus2::lz::BgzfThreadQueueElementHeapComparator]’, inlined from ‘void std::priority_queue<_Tp, _Sequence, _Compare>::pop() [with _Tp = libmaus2::lz::BgzfThreadQueueElement; _Sequence = std::vector >; _Compare = libmaus2::lz::BgzfThreadQueueElementHeapComparator]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_queue.h:894:15, inlined from ‘libmaus2::parallel::StdTerminatableSynchronousHeap<_value_type, _compare>::value_type libmaus2::parallel::StdTerminatableSynchronousHeap<_value_type, _compare>::deque() [with _value_type = libmaus2::lz::BgzfThreadQueueElement; _compare = libmaus2::lz::BgzfThreadQueueElementHeapComparator]’ at ./libmaus2/parallel/StdTerminatableSynchronousHeap.hpp:117:12, inlined from ‘virtual void libmaus2::lz::BgzfInflateDeflateParallelThreadCallable::run()’ at ./libmaus2/lz/BgzfInflateDeflateParallelThread.hpp:297:54: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:334:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 334 | std::__pop_heap(__first, __last, __last, __comp); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testfastqtobam test/testfastqtobam-testfastqtobam.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testfastqtobam test/testfastqtobam-testfastqtobam.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testsamrecoding-testsamrecoding.o `test -f 'test/testsamrecoding.cpp' || echo './'`test/testsamrecoding.cpp In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/bambam/BamAuxFilterVector.hpp:22, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:27, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from ./libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from ./libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from test/testsamrecoding.cpp:20: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/bambam/CigarStringParser.hpp:25, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ In file included from ./libmaus2/bambam/BamAlignmentDecoder.hpp:24: ./libmaus2/bambam/BamHeaderLowMem.hpp: In member function ‘void libmaus2::bambam::BamHeaderLowMem::setupFromText()’: ./libmaus2/bambam/BamHeaderLowMem.hpp:366:58: warning: variable ‘ln’ set but not used [-Wunused-but-set-variable=] 366 | uint64_t ln = 0; | ^~ In file included from /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/16/algorithm:63, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/util/StringSerialisation.hpp:30, from ./libmaus2/util/ArgInfo.hpp:31, from test/testsamrecoding.cpp:19: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h: In function ‘constexpr void std::__pop_heap(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Compare = libmaus2::lz::BgzfThreadQueueElementHeapComparator]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:257:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 257 | __pop_heap(_RandomAccessIterator __first, _RandomAccessIterator __last, | ^~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:257:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:257:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h: In function ‘constexpr void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = less]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1884:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1884 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1884:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1898:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1898 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h: In function ‘constexpr void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = less]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1770:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1770 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1770:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/16/map:64, from ./libmaus2/util/ArgInfo.hpp:23: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h:3250:7: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 3250 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘constexpr void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = less]’, inlined from ‘constexpr void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:4817:18, inlined from ‘void libmaus2::trie::LinearHashTrie<_char_type, _id_type>::fillDepthParent() [with _char_type = char; _id_type = unsigned int]’ at ./libmaus2/trie/TrieState.hpp:261:14: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1913:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1913 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1914 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1915 | __comp); | ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h: In member function ‘std::pair::rebind<_Val>::other>::pointer>::_Base_ptr, typename std::__rb_tree::_Node_traits<_Val, typename __gnu_cxx::__alloc_traits::rebind<_Val>::other>::pointer>::_Base_ptr> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(const_iterator, const key_type&) [with _Key = std::__cxx11::basic_string; _Val = std::pair, long long unsigned int>; _KeyOfValue = std::_Select1st, long long unsigned int> >; _Compare = std::less >; _Alloc = std::allocator, long long unsigned int> >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h:2952:5: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, long long unsigned int>, std::_Select1st, long long unsigned int> >, std::less >, std::allocator, long long unsigned int> > >::const_iterator’ changed in GCC 7.1 2952 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::allocator >&>, std::tuple<>}; _Key = std::__cxx11::basic_string; _Val = std::pair, long long unsigned int>; _KeyOfValue = std::_Select1st, long long unsigned int> >; _Compare = std::less >; _Alloc = std::allocator, long long unsigned int> >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h:3250:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, long long unsigned int>, std::_Select1st, long long unsigned int> >, std::less >, std::allocator, long long unsigned int> > >::const_iterator’ changed in GCC 7.1 3250 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::allocator >&&>, std::tuple<>}; _Key = std::__cxx11::basic_string; _Val = std::pair, long long unsigned int>; _KeyOfValue = std::_Select1st, long long unsigned int> >; _Compare = std::less >; _Alloc = std::allocator, long long unsigned int> >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h:3250:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, long long unsigned int>, std::_Select1st, long long unsigned int> >, std::less >, std::allocator, long long unsigned int> > >::const_iterator’ changed in GCC 7.1 In file included from ./libmaus2/bambam/BamHeader.hpp:36, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:30: ./libmaus2/hashing/ConstantStringHash.hpp: In constructor ‘libmaus2::hashing::ConstantStringHash::ConstantStringHash(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]’: ./libmaus2/hashing/ConstantStringHash.hpp:96:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 96 | ConstantStringHash(iterator ita, iterator ite, uint64_t const maxn = 64*1024) | ^~~~~~~~~~~~~~~~~~ ./libmaus2/hashing/ConstantStringHash.hpp:96:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h: In function ‘constexpr void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = libmaus2::bambam::BamMergeCoordinateHeapComparator]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:229:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 229 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/16/string:55, from ./libmaus2/util/ArgInfo.hpp:22: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algobase.h: In function ‘constexpr void std::iter_swap(_ForwardIterator1, _ForwardIterator2) [with _ForwardIterator1 = __gnu_cxx::__normal_iterator*, vector > >; _ForwardIterator2 = __gnu_cxx::__normal_iterator*, vector > >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algobase.h:154:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 154 | iter_swap(_ForwardIterator1 __a, _ForwardIterator2 __b) | ^~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algobase.h:154:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 In function ‘constexpr void std::pop_heap(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator > >; _Compare = libmaus2::lz::BgzfThreadQueueElementHeapComparator]’, inlined from ‘void std::priority_queue<_Tp, _Sequence, _Compare>::pop() [with _Tp = libmaus2::lz::BgzfThreadQueueElement; _Sequence = std::vector >; _Compare = libmaus2::lz::BgzfThreadQueueElementHeapComparator]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_queue.h:894:15, inlined from ‘libmaus2::parallel::StdTerminatableSynchronousHeap<_value_type, _compare>::value_type libmaus2::parallel::StdTerminatableSynchronousHeap<_value_type, _compare>::deque() [with _value_type = libmaus2::lz::BgzfThreadQueueElement; _compare = libmaus2::lz::BgzfThreadQueueElementHeapComparator]’ at ./libmaus2/parallel/StdTerminatableSynchronousHeap.hpp:117:12, inlined from ‘virtual void libmaus2::lz::BgzfInflateParallelThreadCallable::run()’ at ./libmaus2/lz/BgzfInflateParallelThread.hpp:59:54: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:334:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 334 | std::__pop_heap(__first, __last, __last, __comp); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘constexpr void std::pop_heap(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator > >; _Compare = libmaus2::lz::BgzfThreadQueueElementHeapComparator]’, inlined from ‘void std::priority_queue<_Tp, _Sequence, _Compare>::pop() [with _Tp = libmaus2::lz::BgzfThreadQueueElement; _Sequence = std::vector >; _Compare = libmaus2::lz::BgzfThreadQueueElementHeapComparator]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_queue.h:894:15, inlined from ‘libmaus2::parallel::StdTerminatableSynchronousHeap<_value_type, _compare>::value_type libmaus2::parallel::StdTerminatableSynchronousHeap<_value_type, _compare>::deque() [with _value_type = libmaus2::lz::BgzfThreadQueueElement; _compare = libmaus2::lz::BgzfThreadQueueElementHeapComparator]’ at ./libmaus2/parallel/StdTerminatableSynchronousHeap.hpp:117:12, inlined from ‘virtual void libmaus2::lz::BgzfInflateDeflateParallelThreadCallable::run()’ at ./libmaus2/lz/BgzfInflateDeflateParallelThread.hpp:297:54: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:334:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 334 | std::__pop_heap(__first, __last, __last, __comp); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h: In function ‘constexpr void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Distance = int; _Tp = pair; _Compare = libmaus2::bambam::ReadGroupVectorMerge::ReadGroupIndexComparator]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:229:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 229 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h: In function ‘constexpr void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Size = int; _Compare = libmaus2::bambam::ReadGroupVectorMerge::ReadGroupIndexComparator]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1884:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1884 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1884:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 In function ‘constexpr void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = libmaus2::bambam::ReadGroupVectorMerge::ReadGroupIndexComparator]’, inlined from ‘constexpr _RandomAccessIterator std::__unguarded_partition_pivot(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = libmaus2::bambam::ReadGroupVectorMerge::ReadGroupIndexComparator]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1863:34, inlined from ‘constexpr void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Size = int; _Compare = libmaus2::bambam::ReadGroupVectorMerge::ReadGroupIndexComparator]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1897:38: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:94:27: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 94 | std::iter_swap(__result, __b); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:96:27: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 96 | std::iter_swap(__result, __c); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:98:27: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 98 | std::iter_swap(__result, __a); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h: In function ‘constexpr void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Size = int; _Compare = libmaus2::bambam::ReadGroupVectorMerge::ReadGroupIndexComparator]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1898:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1898 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h: In function ‘constexpr void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = libmaus2::bambam::ReadGroupVectorMerge::ReadGroupIndexComparator]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1770:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1770 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1770:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 In function ‘constexpr void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = libmaus2::bambam::ReadGroupVectorMerge::ReadGroupIndexComparator]’, inlined from ‘constexpr void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator*, vector > >; _Compare = libmaus2::bambam::ReadGroupVectorMerge::ReadGroupIndexComparator]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:4849:18, inlined from ‘libmaus2::bambam::ReadGroupVectorMerge::ReadGroupVectorMerge(const std::vector*>&)’ at ./libmaus2/bambam/ReadGroup.hpp:177:14: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1913:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1913 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1914 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1915 | __comp); | ~~~~~~~ In function ‘constexpr void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = libmaus2::bambam::ReadGroupVectorMerge::ReadGroupIndexComparator]’, inlined from ‘constexpr void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = libmaus2::bambam::ReadGroupVectorMerge::ReadGroupIndexComparator]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1916:31, inlined from ‘constexpr void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator*, vector > >; _Compare = libmaus2::bambam::ReadGroupVectorMerge::ReadGroupIndexComparator]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:4849:18, inlined from ‘libmaus2::bambam::ReadGroupVectorMerge::ReadGroupVectorMerge(const std::vector*>&)’ at ./libmaus2/bambam/ReadGroup.hpp:177:14: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1821:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1821 | std::__insertion_sort(__first, __first + __threshold, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1826:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1826 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h: In function ‘constexpr std::pair<_FIter, _FIter> std::__equal_range(_ForwardIterator, _ForwardIterator, const _Tp&, _Compare) [with _ForwardIterator = __gnu_cxx::__normal_iterator >; _Tp = libmaus2::bambam::Chromosome; _Compare = libmaus2::bambam::ChromosomeVectorMerge::ChromosomeIndexComparator]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:2076:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2076 | __equal_range(_ForwardIterator __first, _ForwardIterator __last, | ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:2076:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In function ‘constexpr std::pair<_FIter, _FIter> std::equal_range(_FIter, _FIter, const _Tp&, _Compare) [with _FIter = __gnu_cxx::__normal_iterator >; _Tp = libmaus2::bambam::Chromosome; _Compare = libmaus2::bambam::ChromosomeVectorMerge::ChromosomeIndexComparator]’, inlined from ‘libmaus2::bambam::ChromosomeVectorMerge::ChromosomeVectorMerge(const std::vector*>&, bool)’ at ./libmaus2/bambam/ChromosomeVectorMerge.hpp:161:55: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:2180:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2180 | return std::__equal_range(__first, __last, __val, __comp); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘constexpr std::pair<_FIter, _FIter> std::equal_range(_FIter, _FIter, const _Tp&, _Compare) [with _FIter = __gnu_cxx::__normal_iterator >; _Tp = libmaus2::bambam::Chromosome; _Compare = libmaus2::bambam::ChromosomeVectorMerge::ChromosomeIndexComparator]’, inlined from ‘libmaus2::bambam::ChromosomeVectorMerge::ChromosomeVectorMerge(const std::vector*>&, bool)’ at ./libmaus2/bambam/ChromosomeVectorMerge.hpp:165:55: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:2180:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2180 | return std::__equal_range(__first, __last, __val, __comp); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/16/map:65: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::set; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘libmaus2::bambam::ChromosomeVectorMerge::ChromosomeVectorMerge(const std::vector*>&, bool)’ at ./libmaus2/bambam/ChromosomeVectorMerge.hpp:169:22: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::set; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘libmaus2::bambam::ChromosomeVectorMerge::ChromosomeVectorMerge(const std::vector*>&, bool)’ at ./libmaus2/bambam/ChromosomeVectorMerge.hpp:170:23: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::set; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘libmaus2::bambam::ChromosomeVectorMerge::ChromosomeVectorMerge(const std::vector*>&, bool)’ at ./libmaus2/bambam/ChromosomeVectorMerge.hpp:204:19: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::set; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘libmaus2::bambam::ChromosomeVectorMerge::ChromosomeVectorMerge(const std::vector*>&, bool)’ at ./libmaus2/bambam/ChromosomeVectorMerge.hpp:204:38: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::set; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘libmaus2::bambam::ChromosomeVectorMerge::ChromosomeVectorMerge(const std::vector*>&, bool)’ at ./libmaus2/bambam/ChromosomeVectorMerge.hpp:206:20: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::set; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘libmaus2::bambam::ChromosomeVectorMerge::ChromosomeVectorMerge(const std::vector*>&, bool)’ at ./libmaus2/bambam/ChromosomeVectorMerge.hpp:206:40: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In function ‘constexpr std::pair<_FIter, _FIter> std::equal_range(_FIter, _FIter, const _Tp&, _Compare) [with _FIter = __gnu_cxx::__normal_iterator >; _Tp = libmaus2::bambam::Chromosome; _Compare = libmaus2::bambam::ChromosomeVectorMerge::ChromosomeIndexComparator]’, inlined from ‘libmaus2::bambam::ChromosomeVectorMerge::ChromosomeVectorMerge(const std::vector*>&, bool)’ at ./libmaus2/bambam/ChromosomeVectorMerge.hpp:249:56: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:2180:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2180 | return std::__equal_range(__first, __last, __val, __comp); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = std::__cxx11::basic_string; _Tp = long long unsigned int; _Compare = std::less >; _Alloc = std::allocator, long long unsigned int> >]’, inlined from ‘libmaus2::bambam::ProgramHeaderLineSet::ProgramHeaderLineSet(const std::string&)’ at ./libmaus2/bambam/ProgramHeaderLineSet.hpp:56:38: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:559:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, long long unsigned int>, std::_Select1st, long long unsigned int> >, std::less >, std::allocator, long long unsigned int> > >::const_iterator’ changed in GCC 7.1 559 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = std::__cxx11::basic_string; _Tp = long long unsigned int; _Compare = std::less >; _Alloc = std::allocator, long long unsigned int> >]’, inlined from ‘libmaus2::bambam::ProgramHeaderLinesMerge::ProgramHeaderLinesMerge(const std::vector*>&)’ at ./libmaus2/bambam/ProgramHeaderLineSet.hpp:397:35: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:559:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, long long unsigned int>, std::_Select1st, long long unsigned int> >, std::less >, std::allocator, long long unsigned int> > >::const_iterator’ changed in GCC 7.1 559 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string; _Tp = long long unsigned int; _Compare = std::less >; _Alloc = std::allocator, long long unsigned int> >]’, inlined from ‘libmaus2::bambam::ProgramHeaderLinesMerge::ProgramHeaderLinesMerge(const std::vector*>&)’ at ./libmaus2/bambam/ProgramHeaderLineSet.hpp:412:68: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, long long unsigned int>, std::_Select1st, long long unsigned int> >, std::less >, std::allocator, long long unsigned int> > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string; _Tp = long long unsigned int; _Compare = std::less >; _Alloc = std::allocator, long long unsigned int> >]’, inlined from ‘libmaus2::bambam::ProgramHeaderLinesMerge::ProgramHeaderLinesMerge(const std::vector*>&)’ at ./libmaus2/bambam/ProgramHeaderLineSet.hpp:475:21: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:540:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, long long unsigned int>, std::_Select1st, long long unsigned int> >, std::less >, std::allocator, long long unsigned int> > >::const_iterator’ changed in GCC 7.1 540 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In static member function ‘static libmaus2::hashing::ConstantStringHash::shared_ptr_type libmaus2::hashing::ConstantStringHash::constructShared(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]’, inlined from ‘void libmaus2::bambam::BamHeader::initSetup()’ at ./libmaus2/bambam/BamHeader.hpp:965:67: ./libmaus2/hashing/ConstantStringHash.hpp:86:59: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 86 | shared_ptr_type s(new this_type(ita,ite,maxn)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h: In function ‘constexpr void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Distance = int; _Tp = pair; _Compare = less]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:229:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 229 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h: In function ‘constexpr void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Size = int; _Compare = less]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1884:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1884 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1884:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 In function ‘constexpr void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = less]’, inlined from ‘constexpr _RandomAccessIterator std::__unguarded_partition_pivot(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = less]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1863:34, inlined from ‘constexpr void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Size = int; _Compare = less]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1897:38: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:94:27: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 94 | std::iter_swap(__result, __b); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:96:27: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 96 | std::iter_swap(__result, __c); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:98:27: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 98 | std::iter_swap(__result, __a); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h: In function ‘constexpr void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Size = int; _Compare = less]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1898:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1898 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘constexpr void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = less]’, inlined from ‘constexpr void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator*, vector > >]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:4817:18, inlined from ‘std::vector > libmaus2::bambam::BamIndex::reg2chunks(uint64_t, uint64_t, uint64_t) const’ at ./libmaus2/bambam/BamIndex.hpp:379:14: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1913:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1913 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1914 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1915 | __comp); | ~~~~~~~ In function ‘constexpr void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = less]’, inlined from ‘constexpr void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = less]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1916:31, inlined from ‘constexpr void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator*, vector > >]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:4817:18, inlined from ‘std::vector > libmaus2::bambam::BamIndex::reg2chunks(uint64_t, uint64_t, uint64_t) const’ at ./libmaus2/bambam/BamIndex.hpp:379:14: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1821:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1821 | std::__insertion_sort(__first, __first + __threshold, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1826:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1826 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testsamrecoding test/testsamrecoding-testsamrecoding.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testsamrecoding test/testsamrecoding-testsamrecoding.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testdazzlerdb-testdazzlerdb.o `test -f 'test/testdazzlerdb.cpp' || echo './'`test/testdazzlerdb.cpp In file included from ./libmaus2/lcs/Aligner.hpp:21, from ./libmaus2/dazzler/align/Overlap.hpp:22, from ./libmaus2/dazzler/align/OverlapMeta.hpp:21, from ./libmaus2/dazzler/align/Tandem.hpp:21, from ./libmaus2/dazzler/align/TandemVector.hpp:21, from ./libmaus2/dazzler/align/TandemVectorPartContainer.hpp:22, from test/testdazzlerdb.cpp:18: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ In file included from ./libmaus2/dazzler/align/OverlapIndexer.hpp:30, from ./libmaus2/dazzler/align/OverlapMetaIteratorGet.hpp:21, from test/testdazzlerdb.cpp:19: ./libmaus2/index/ExternalMemoryIndexDecoder.hpp: In instantiation of ‘void libmaus2::index::ExternalMemoryIndexDecoder<_data_type, _base_level_log, _inner_level_log, _comparator>::setup(uint64_t) [with _data_type = libmaus2::dazzler::align::OverlapMeta; unsigned int _base_level_log = 8; unsigned int _inner_level_log = 3; _comparator = std::less; uint64_t = long long unsigned int]’: ./libmaus2/index/ExternalMemoryIndexDecoder.hpp:183:5: required from ‘libmaus2::index::ExternalMemoryIndexDecoder<_data_type, _base_level_log, _inner_level_log, _comparator>::ExternalMemoryIndexDecoder(const std::string&, uint64_t) [with _data_type = libmaus2::dazzler::align::OverlapMeta; unsigned int _base_level_log = 8; unsigned int _inner_level_log = 3; _comparator = std::less; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’ 183 | setup(rcache_thres); | ^~~~~ ./libmaus2/dazzler/align/OverlapIndexer.hpp:109:108: required from here 109 | libmaus2::index::ExternalMemoryIndexDecoder EMID(indexname); | ^ ./libmaus2/index/ExternalMemoryIndexDecoder.hpp:99:46: warning: variable ‘numcache’ set but not used [-Wunused-but-set-variable=] 99 | unsigned int numcache = 0; | ^~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testdazzlerdb test/testdazzlerdb-testdazzlerdb.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testdazzlerdb test/testdazzlerdb-testdazzlerdb.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testfastashred-testfastashred.o `test -f 'test/testfastashred.cpp' || echo './'`test/testfastashred.cpp In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/util/IntervalTree.hpp:25, from ./libmaus2/fastx/FastInterval.hpp:25, from ./libmaus2/fastx/FastAReader.hpp:31, from ./libmaus2/fastx/StreamFastAReader.hpp:23, from test/testfastashred.cpp:20: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testfastashred test/testfastashred-testfastashred.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testfastashred test/testfastashred-testfastashred.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testalignerspeed-testalignerspeed.o `test -f 'test/testalignerspeed.cpp' || echo './'`test/testalignerspeed.cpp In file included from ./libmaus2/lcs/NNPTraceContainer.hpp:23, from ./libmaus2/lcs/NNPCor.hpp:22, from test/testalignerspeed.cpp:18: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/util/IntervalTree.hpp:25, from ./libmaus2/fastx/FastInterval.hpp:25, from ./libmaus2/fastx/FastAReader.hpp:31, from ./libmaus2/fastx/StreamFastAReader.hpp:23, from ./libmaus2/random/DNABaseNoiseSpiker.hpp:22, from test/testalignerspeed.cpp:39: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testalignerspeed test/testalignerspeed-testalignerspeed.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testalignerspeed test/testalignerspeed-testalignerspeed.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testfastasingleline-testfastasingleline.o `test -f 'test/testfastasingleline.cpp' || echo './'`test/testfastasingleline.cpp In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/util/IntervalTree.hpp:25, from ./libmaus2/fastx/FastInterval.hpp:25, from ./libmaus2/fastx/FastAReader.hpp:31, from ./libmaus2/fastx/StreamFastAReader.hpp:23, from test/testfastasingleline.cpp:18: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testfastasingleline test/testfastasingleline-testfastasingleline.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testfastasingleline test/testfastasingleline-testfastasingleline.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testdazzleralignmentrewrite-testdazzleralignmentrewrite.o `test -f 'test/testdazzleralignmentrewrite.cpp' || echo './'`test/testdazzleralignmentrewrite.cpp In file included from ./libmaus2/lcs/Aligner.hpp:21, from ./libmaus2/dazzler/align/Overlap.hpp:22, from ./libmaus2/dazzler/align/AlignmentFile.hpp:21, from test/testdazzleralignmentrewrite.cpp:18: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testdazzleralignmentrewrite test/testdazzleralignmentrewrite-testdazzleralignmentrewrite.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testdazzleralignmentrewrite test/testdazzleralignmentrewrite-testdazzleralignmentrewrite.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testxz-testxz.o `test -f 'test/testxz.cpp' || echo './'`test/testxz.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testxz test/testxz-testxz.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testxz test/testxz-testxz.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testdazzlerindex-testdazzlerindex.o `test -f 'test/testdazzlerindex.cpp' || echo './'`test/testdazzlerindex.cpp In file included from ./libmaus2/lcs/Aligner.hpp:21, from ./libmaus2/dazzler/align/Overlap.hpp:22, from ./libmaus2/dazzler/align/AlignmentFile.hpp:21, from ./libmaus2/dazzler/align/DalignerIndexDecoder.hpp:21, from ./libmaus2/dazzler/align/AlignmentFileDecoder.hpp:21, from ./libmaus2/dazzler/align/OverlapIndexer.hpp:21, from test/testdazzlerindex.cpp:19: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ In file included from ./libmaus2/dazzler/align/OverlapIndexer.hpp:30: ./libmaus2/index/ExternalMemoryIndexDecoder.hpp: In instantiation of ‘void libmaus2::index::ExternalMemoryIndexDecoder<_data_type, _base_level_log, _inner_level_log, _comparator>::setup(uint64_t) [with _data_type = libmaus2::dazzler::align::OverlapMeta; unsigned int _base_level_log = 8; unsigned int _inner_level_log = 3; _comparator = std::less; uint64_t = long long unsigned int]’: ./libmaus2/index/ExternalMemoryIndexDecoder.hpp:183:5: required from ‘libmaus2::index::ExternalMemoryIndexDecoder<_data_type, _base_level_log, _inner_level_log, _comparator>::ExternalMemoryIndexDecoder(const std::string&, uint64_t) [with _data_type = libmaus2::dazzler::align::OverlapMeta; unsigned int _base_level_log = 8; unsigned int _inner_level_log = 3; _comparator = std::less; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’ 183 | setup(rcache_thres); | ^~~~~ ./libmaus2/dazzler/align/OverlapIndexer.hpp:109:108: required from here 109 | libmaus2::index::ExternalMemoryIndexDecoder EMID(indexname); | ^ ./libmaus2/index/ExternalMemoryIndexDecoder.hpp:99:46: warning: variable ‘numcache’ set but not used [-Wunused-but-set-variable=] 99 | unsigned int numcache = 0; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/16/map:64, from ./libmaus2/util/ArgInfo.hpp:23, from test/testdazzlerindex.cpp:18: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h:3250:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 3250 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/16/map:65: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = long long unsigned int; _Tp = long long unsigned int; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘int main(int, char**)’ at test/testdazzlerindex.cpp:64:16: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:559:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 559 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = long long unsigned int; _Tp = long long unsigned int; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘int main(int, char**)’ at test/testdazzlerindex.cpp:84:20: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_map.h:559:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 559 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testdazzlerindex test/testdazzlerindex-testdazzlerindex.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testdazzlerindex test/testdazzlerindex-testdazzlerindex.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testargparser-testargparser.o `test -f 'test/testargparser.cpp' || echo './'`test/testargparser.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testargparser test/testargparser-testargparser.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testargparser test/testargparser-testargparser.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testdnarank-testdnarank.o `test -f 'test/testdnarank.cpp' || echo './'`test/testdnarank.cpp In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/rank/DNARank.hpp:35, from ./libmaus2/rank/DNARankSuffixTreeNodeEnumerator.hpp:22, from test/testdnarank.cpp:20: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/huffman/huffman.hpp:183, from ./libmaus2/huffman/CanonicalEncoder.hpp:26, from ./libmaus2/huffman/RLDecoder.hpp:27, from ./libmaus2/rank/DNARank.hpp:24: ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 2]’: ./libmaus2/huffman/HuffmanSorting.hpp:860:55: required from here 860 | huffman::EncodeTable enctable ( root ); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:188: ./libmaus2/huffman/HuffmanSorting.hpp: In instantiation of ‘static void libmaus2::huffman::HuffmanSorting::uncompressHuffmanCoded(uint64_t*, uint64_t, uint64_t, uint64_t, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::HuffmanTreeNode*, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::EncodeTable&) [with unsigned int lookupwords = 2; uint64_t = long long unsigned int]’: ./libmaus2/huffman/HuffmanSorting.hpp:1091:27: required from here 1091 | uncompressHuffmanCoded(acode.get(), 0 /* bit offset */, lowhalf /* syms */, firsthighsym, enctable,dectable,root.get(),dectable0,dectable1,enctable0,enctable1); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/huffman/HuffmanSorting.hpp:534:42: warning: variable ‘alldecoffset’ set but not used [-Wunused-but-set-variable=] 534 | uint64_t alldecoffset = highdecoffset; | ^~~~~~~~~~~~ ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 1]’: ./libmaus2/huffman/CanonicalEncoder.hpp:219:116: required from here 219 | return ::libmaus2::huffman::EncodeTable<1>::unique_ptr_type(new ::libmaus2::huffman::EncodeTable<1>(Ptree.get())); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/16/algorithm:63, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/rank/DNARankSMEMContext.hpp:22, from ./libmaus2/rank/DNARank.hpp:21: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h: In function ‘constexpr void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = libmaus2::rank::DNARankTemplate<64>::DNARankMEMContComp]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1770:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1770 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1770:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h: In function ‘constexpr void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = libmaus2::rank::DNARankTemplate<128>::DNARankMEMContComp]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1770:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1770:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h: In function ‘constexpr void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = libmaus2::rank::DNARankTemplate<256>::DNARankMEMContComp]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1770:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1770:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:61: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h: In function ‘constexpr void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = libmaus2::rank::DNARankMEM; _Compare = libmaus2::rank::DNARankTemplate<64>::DNARankMEMContComp]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:229:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 229 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h: In function ‘constexpr void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = libmaus2::rank::DNARankTemplate<64>::DNARankMEMContComp]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1884:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1884 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1884:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1898:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1898 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘constexpr void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = libmaus2::rank::DNARankTemplate<64>::DNARankMEMContComp]’, inlined from ‘constexpr void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = libmaus2::rank::DNARankTemplate<64>::DNARankMEMContComp]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:4849:18, inlined from ‘void libmaus2::rank::DNARankTemplate::mems(iterator, uint64_t, uint64_t, uint64_t, uint64_t, uint64_t, std::vector&) const [with iterator = char*; unsigned int cachelinesize = 64]’ at ./libmaus2/rank/DNARank.hpp:727:14, inlined from ‘_ZNK8libmaus24rank15DNARankTemplateILj64EE10testSearchEjy._omp_fn.0’ at ./libmaus2/rank/DNARank.hpp:1089:10: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1913:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1913 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1914 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1915 | __comp); | ~~~~~~~ In function ‘constexpr void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = libmaus2::rank::DNARankTemplate<64>::DNARankMEMContComp]’, inlined from ‘constexpr void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = libmaus2::rank::DNARankTemplate<64>::DNARankMEMContComp]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1916:31, inlined from ‘constexpr void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = libmaus2::rank::DNARankTemplate<64>::DNARankMEMContComp]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:4849:18, inlined from ‘void libmaus2::rank::DNARankTemplate::mems(iterator, uint64_t, uint64_t, uint64_t, uint64_t, uint64_t, std::vector&) const [with iterator = char*; unsigned int cachelinesize = 64]’ at ./libmaus2/rank/DNARank.hpp:727:14, inlined from ‘_ZNK8libmaus24rank15DNARankTemplateILj64EE10testSearchEjy._omp_fn.0’ at ./libmaus2/rank/DNARank.hpp:1089:10: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1821:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1821 | std::__insertion_sort(__first, __first + __threshold, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1826:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1826 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h: In function ‘constexpr void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = libmaus2::rank::DNARankMEM; _Compare = libmaus2::rank::DNARankTemplate<128>::DNARankMEMContComp]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:229:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 229 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h: In function ‘constexpr void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = libmaus2::rank::DNARankTemplate<128>::DNARankMEMContComp]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1884:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1884 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1884:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1898:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1898 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘constexpr void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = libmaus2::rank::DNARankTemplate<128>::DNARankMEMContComp]’, inlined from ‘constexpr void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = libmaus2::rank::DNARankTemplate<128>::DNARankMEMContComp]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:4849:18, inlined from ‘void libmaus2::rank::DNARankTemplate::mems(iterator, uint64_t, uint64_t, uint64_t, uint64_t, uint64_t, std::vector&) const [with iterator = char*; unsigned int cachelinesize = 128]’ at ./libmaus2/rank/DNARank.hpp:727:14, inlined from ‘_ZNK8libmaus24rank15DNARankTemplateILj128EE10testSearchEjy._omp_fn.0’ at ./libmaus2/rank/DNARank.hpp:1089:10: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1913:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1913 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1914 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1915 | __comp); | ~~~~~~~ In function ‘constexpr void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = libmaus2::rank::DNARankTemplate<128>::DNARankMEMContComp]’, inlined from ‘constexpr void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = libmaus2::rank::DNARankTemplate<128>::DNARankMEMContComp]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1916:31, inlined from ‘constexpr void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = libmaus2::rank::DNARankTemplate<128>::DNARankMEMContComp]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:4849:18, inlined from ‘void libmaus2::rank::DNARankTemplate::mems(iterator, uint64_t, uint64_t, uint64_t, uint64_t, uint64_t, std::vector&) const [with iterator = char*; unsigned int cachelinesize = 128]’ at ./libmaus2/rank/DNARank.hpp:727:14, inlined from ‘_ZNK8libmaus24rank15DNARankTemplateILj128EE10testSearchEjy._omp_fn.0’ at ./libmaus2/rank/DNARank.hpp:1089:10: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1821:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1821 | std::__insertion_sort(__first, __first + __threshold, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1826:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1826 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h: In function ‘constexpr void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = libmaus2::rank::DNARankMEM; _Compare = libmaus2::rank::DNARankTemplate<256>::DNARankMEMContComp]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:229:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 229 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h: In function ‘constexpr void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = libmaus2::rank::DNARankTemplate<256>::DNARankMEMContComp]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1884:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1884 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1884:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1898:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1898 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘constexpr void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = libmaus2::rank::DNARankTemplate<256>::DNARankMEMContComp]’, inlined from ‘constexpr void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = libmaus2::rank::DNARankTemplate<256>::DNARankMEMContComp]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:4849:18, inlined from ‘void libmaus2::rank::DNARankTemplate::mems(iterator, uint64_t, uint64_t, uint64_t, uint64_t, uint64_t, std::vector&) const [with iterator = char*; unsigned int cachelinesize = 256]’ at ./libmaus2/rank/DNARank.hpp:727:14, inlined from ‘_ZNK8libmaus24rank15DNARankTemplateILj256EE10testSearchEjy._omp_fn.0’ at ./libmaus2/rank/DNARank.hpp:1089:10: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1913:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1913 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1914 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1915 | __comp); | ~~~~~~~ In function ‘constexpr void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = libmaus2::rank::DNARankTemplate<256>::DNARankMEMContComp]’, inlined from ‘constexpr void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = libmaus2::rank::DNARankTemplate<256>::DNARankMEMContComp]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1916:31, inlined from ‘constexpr void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = libmaus2::rank::DNARankTemplate<256>::DNARankMEMContComp]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:4849:18, inlined from ‘void libmaus2::rank::DNARankTemplate::mems(iterator, uint64_t, uint64_t, uint64_t, uint64_t, uint64_t, std::vector&) const [with iterator = char*; unsigned int cachelinesize = 256]’ at ./libmaus2/rank/DNARank.hpp:727:14, inlined from ‘_ZNK8libmaus24rank15DNARankTemplateILj256EE10testSearchEjy._omp_fn.0’ at ./libmaus2/rank/DNARank.hpp:1089:10: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1821:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1821 | std::__insertion_sort(__first, __first + __threshold, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1826:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1826 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testdnarank test/testdnarank-testdnarank.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testdnarank test/testdnarank-testdnarank.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testlowbits-testlowbits.o `test -f 'test/testlowbits.cpp' || echo './'`test/testlowbits.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testlowbits test/testlowbits-testlowbits.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testlowbits test/testlowbits-testlowbits.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testfastaexplode-testfastaexplode.o `test -f 'test/testfastaexplode.cpp' || echo './'`test/testfastaexplode.cpp In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/util/IntervalTree.hpp:25, from ./libmaus2/fastx/FastInterval.hpp:25, from ./libmaus2/fastx/FastAReader.hpp:31, from ./libmaus2/fastx/StreamFastAReader.hpp:23, from test/testfastaexplode.cpp:21: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testfastaexplode test/testfastaexplode-testfastaexplode.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testfastaexplode test/testfastaexplode-testfastaexplode.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testfaextract-testfaextract.o `test -f 'test/testfaextract.cpp' || echo './'`test/testfaextract.cpp In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/bambam/BamAuxFilterVector.hpp:22, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:27, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from ./libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from test/testfaextract.cpp:22: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/bambam/CigarStringParser.hpp:25, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ In file included from ./libmaus2/bambam/BamAlignmentDecoder.hpp:24: ./libmaus2/bambam/BamHeaderLowMem.hpp: In member function ‘void libmaus2::bambam::BamHeaderLowMem::setupFromText()’: ./libmaus2/bambam/BamHeaderLowMem.hpp:366:58: warning: variable ‘ln’ set but not used [-Wunused-but-set-variable=] 366 | uint64_t ln = 0; | ^~ /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testfaextract test/testfaextract-testfaextract.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testfaextract test/testfaextract-testfaextract.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testmurmur3-testmurmur3.o `test -f 'test/testmurmur3.cpp' || echo './'`test/testmurmur3.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testmurmur3 test/testmurmur3-testmurmur3.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testmurmur3 test/testmurmur3-testmurmur3.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testpairalign-testpairalign.o `test -f 'test/testpairalign.cpp' || echo './'`test/testpairalign.cpp In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/util/IntervalTree.hpp:25, from ./libmaus2/fastx/FastInterval.hpp:25, from ./libmaus2/fastx/FastAReader.hpp:31, from test/testpairalign.cpp:18: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/lcs/Aligner.hpp:21, from ./libmaus2/lcs/NP.hpp:21, from test/testpairalign.cpp:20: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ In file included from ./libmaus2/dazzler/align/OverlapIndexer.hpp:30, from ./libmaus2/dazzler/align/AlignmentWriter.hpp:21, from test/testpairalign.cpp:24: ./libmaus2/index/ExternalMemoryIndexDecoder.hpp: In instantiation of ‘void libmaus2::index::ExternalMemoryIndexDecoder<_data_type, _base_level_log, _inner_level_log, _comparator>::setup(uint64_t) [with _data_type = libmaus2::dazzler::align::OverlapMeta; unsigned int _base_level_log = 8; unsigned int _inner_level_log = 3; _comparator = std::less; uint64_t = long long unsigned int]’: ./libmaus2/index/ExternalMemoryIndexDecoder.hpp:183:5: required from ‘libmaus2::index::ExternalMemoryIndexDecoder<_data_type, _base_level_log, _inner_level_log, _comparator>::ExternalMemoryIndexDecoder(const std::string&, uint64_t) [with _data_type = libmaus2::dazzler::align::OverlapMeta; unsigned int _base_level_log = 8; unsigned int _inner_level_log = 3; _comparator = std::less; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’ 183 | setup(rcache_thres); | ^~~~~ ./libmaus2/dazzler/align/OverlapIndexer.hpp:109:108: required from here 109 | libmaus2::index::ExternalMemoryIndexDecoder EMID(indexname); | ^ ./libmaus2/index/ExternalMemoryIndexDecoder.hpp:99:46: warning: variable ‘numcache’ set but not used [-Wunused-but-set-variable=] 99 | unsigned int numcache = 0; | ^~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testpairalign test/testpairalign-testpairalign.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testpairalign test/testpairalign-testpairalign.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testsplaytree-testsplaytree.o `test -f 'test/testsplaytree.cpp' || echo './'`test/testsplaytree.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/16/map:64, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:51, from ./libmaus2/util/ContainerElementFreeList.hpp:21, from ./libmaus2/util/SplayTree.hpp:23, from test/testsplaytree.cpp:18: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h: In function ‘std::pair::rebind<_Val>::other>::pointer>::_Base_ptr, typename std::__rb_tree::_Node_traits<_Val, typename __gnu_cxx::__alloc_traits::rebind<_Val>::other>::pointer>::_Base_ptr> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(const_iterator, const key_type&) [with _Key = long long unsigned int; _Val = long long unsigned int; _KeyOfValue = std::_Identity; _Compare = std::less; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_tree.h:2952:5: note: parameter passing for argument of type ‘std::_Rb_tree, std::less, std::allocator >::const_iterator’ changed in GCC 7.1 2952 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/16/algorithm:63, from ./libmaus2/autoarray/AutoArray.hpp:35: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h: In function ‘constexpr void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Size = int; _Compare = less]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1884:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1884 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1884:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1898:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1898 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘constexpr void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Compare = less]’, inlined from ‘constexpr void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator > >]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:4817:18, inlined from ‘void test2()’ at test/testsplaytree.cpp:143:13: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1913:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1913 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1914 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1915 | __comp); | ~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testsplaytree test/testsplaytree-testsplaytree.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testsplaytree test/testsplaytree-testsplaytree.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testbwtconstruction-testbwtconstruction.o `test -f 'test/testbwtconstruction.cpp' || echo './'`test/testbwtconstruction.cpp In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/util/IntervalTree.hpp:25, from ./libmaus2/gamma/GammaRLDecoder.hpp:28, from ./libmaus2/gamma/GammaRLEncoder.hpp:29, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:24, from ./libmaus2/suffixsort/bwtb3m/BwtMergeComputeSampledSA.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from test/testbwtconstruction.cpp:19: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/suffixsort/bwtb3m/GapArrayWrapper.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeIsaParallelBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:24: ./libmaus2/util/AtomicArray.hpp: At global scope: ./libmaus2/util/AtomicArray.hpp:45:43: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 45 | AtomicArray(AtomicArray const & O) = delete; | ^~~~~~~~~~~~~~~~~ ./libmaus2/util/AtomicArray.hpp:45:43: note: remove the ‘< >’ In file included from ./libmaus2/suffixsort/bwtb3m/BwtMergeIsaParallelBase.hpp:24: ./libmaus2/suffixsort/GapArrayByte.hpp: In member function ‘void libmaus2::suffixsort::GapArrayByte::flush()’: ./libmaus2/suffixsort/GapArrayByte.hpp:134:42: warning: variable ‘overflowcnt’ set but not used [-Wunused-but-set-variable=] 134 | uint64_t overflowcnt = 0; | ^~~~~~~~~~~ In file included from ./libmaus2/suffixsort/BwtMergeTempFileNameSet.hpp:27, from ./libmaus2/suffixsort/BwtMergeBlockSortResult.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:33: ./libmaus2/util/DirectoryStructure.hpp: In member function ‘std::string libmaus2::util::DirectoryStructure::printGenerate(std::ostream&, std::string, uint64_t) const’: ./libmaus2/util/DirectoryStructure.hpp:207:58: warning: variable ‘batchcnt’ set but not used [-Wunused-but-set-variable=] 207 | uint64_t batchcnt = 0; | ^~~~~~~~ ./libmaus2/util/DirectoryStructure.hpp: In member function ‘std::string libmaus2::util::DirectoryStructure::printRemove(std::ostream&, std::string, uint64_t) const’: ./libmaus2/util/DirectoryStructure.hpp:282:58: warning: variable ‘batchcnt’ set but not used [-Wunused-but-set-variable=] 282 | uint64_t batchcnt = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:183, from ./libmaus2/huffman/CanonicalEncoder.hpp:26, from ./libmaus2/huffman/RLEncoder.hpp:25, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22: ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 2]’: ./libmaus2/huffman/HuffmanSorting.hpp:860:55: required from here 860 | huffman::EncodeTable enctable ( root ); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:188: ./libmaus2/huffman/HuffmanSorting.hpp: In instantiation of ‘static void libmaus2::huffman::HuffmanSorting::uncompressHuffmanCoded(uint64_t*, uint64_t, uint64_t, uint64_t, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::HuffmanTreeNode*, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::EncodeTable&) [with unsigned int lookupwords = 2; uint64_t = long long unsigned int]’: ./libmaus2/huffman/HuffmanSorting.hpp:1091:27: required from here 1091 | uncompressHuffmanCoded(acode.get(), 0 /* bit offset */, lowhalf /* syms */, firsthighsym, enctable,dectable,root.get(),dectable0,dectable1,enctable0,enctable1); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/huffman/HuffmanSorting.hpp:534:42: warning: variable ‘alldecoffset’ set but not used [-Wunused-but-set-variable=] 534 | uint64_t alldecoffset = highdecoffset; | ^~~~~~~~~~~~ ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 1]’: ./libmaus2/huffman/CanonicalEncoder.hpp:219:116: required from here 219 | return ::libmaus2::huffman::EncodeTable<1>::unique_ptr_type(new ::libmaus2::huffman::EncodeTable<1>(Ptree.get())); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/wavelet/RlToHwtBase.hpp:30, from ./libmaus2/wavelet/RlToHwtTermRequest.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:44: ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp: In instantiation of ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTree(libmaus2::autoarray::AutoArray&, const std::string&, const std::string&, const libmaus2::huffman::HuffmanTree*, uint64_t) [with bool radixsort = true; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’: ./libmaus2/suffixsort/BwtMergeBlockSortRequest.hpp:862:90: required from ‘libmaus2::suffixsort::BwtMergeBlockSortResult libmaus2::suffixsort::BwtMergeBlockSortRequest::sortBlock(std::ostream*) const [with input_types_type = libmaus2::suffixsort::ByteInputTypes<32>; rl_encoder = libmaus2::huffman::RLEncoderTemplate, libmaus2::bitio::FastWriteBitWriterTemplate >, 128, 255, false> > >; std::ostream = std::basic_ostream]’ 862 | ::libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTree( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 863 | UT,tmpfilenames.getHWT(),tmpfileprefix,uhnode.get(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 864 | 1/* num threads */ | ~~~~~~~~~~~~~~~~~~ 865 | ); | ~ ./libmaus2/suffixsort/BwtMergeBlockSortRequest.hpp:979:79: required from ‘std::string libmaus2::suffixsort::BwtMergeBlockSortRequest::dispatch(std::ostream*) const [with rl_encoder = libmaus2::huffman::RLEncoderTemplate, libmaus2::bitio::FastWriteBitWriterTemplate >, 128, 255, false> > >; std::string = std::__cxx11::basic_string; std::ostream = std::basic_ostream]’ 979 | result = sortBlock,rl_encoder>(logstr); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BaseBlockSortThread.hpp:128:118: required from here 128 | block->sortresult = ::libmaus2::suffixsort::BwtMergeBlockSortResult::load(block->sortreq.dispatch(logstr)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:874:90: warning: variable ‘l_numsyms0’ set but not used [-Wunused-but-set-variable=] 874 | uint64_t l_numsyms0 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:879:90: warning: variable ‘r_numsyms1’ set but not used [-Wunused-but-set-variable=] 879 | uint64_t r_numsyms1 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:755:66: warning: variable ‘numsyms1’ set but not used [-Wunused-but-set-variable=] 755 | uint64_t numsyms1 = 0; | ^~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testbwtconstruction test/testbwtconstruction-testbwtconstruction.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testbwtconstruction test/testbwtconstruction-testbwtconstruction.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testbwtconstructionfasta-testbwtconstructionfasta.o `test -f 'test/testbwtconstructionfasta.cpp' || echo './'`test/testbwtconstructionfasta.cpp In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/util/IntervalTree.hpp:25, from ./libmaus2/gamma/GammaRLDecoder.hpp:28, from ./libmaus2/gamma/GammaRLEncoder.hpp:29, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:24, from ./libmaus2/suffixsort/bwtb3m/BwtMergeComputeSampledSA.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from test/testbwtconstructionfasta.cpp:22: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/suffixsort/bwtb3m/GapArrayWrapper.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeIsaParallelBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:24: ./libmaus2/util/AtomicArray.hpp: At global scope: ./libmaus2/util/AtomicArray.hpp:45:43: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 45 | AtomicArray(AtomicArray const & O) = delete; | ^~~~~~~~~~~~~~~~~ ./libmaus2/util/AtomicArray.hpp:45:43: note: remove the ‘< >’ In file included from ./libmaus2/suffixsort/bwtb3m/BwtMergeIsaParallelBase.hpp:24: ./libmaus2/suffixsort/GapArrayByte.hpp: In member function ‘void libmaus2::suffixsort::GapArrayByte::flush()’: ./libmaus2/suffixsort/GapArrayByte.hpp:134:42: warning: variable ‘overflowcnt’ set but not used [-Wunused-but-set-variable=] 134 | uint64_t overflowcnt = 0; | ^~~~~~~~~~~ In file included from ./libmaus2/suffixsort/BwtMergeTempFileNameSet.hpp:27, from ./libmaus2/suffixsort/BwtMergeBlockSortResult.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:33: ./libmaus2/util/DirectoryStructure.hpp: In member function ‘std::string libmaus2::util::DirectoryStructure::printGenerate(std::ostream&, std::string, uint64_t) const’: ./libmaus2/util/DirectoryStructure.hpp:207:58: warning: variable ‘batchcnt’ set but not used [-Wunused-but-set-variable=] 207 | uint64_t batchcnt = 0; | ^~~~~~~~ ./libmaus2/util/DirectoryStructure.hpp: In member function ‘std::string libmaus2::util::DirectoryStructure::printRemove(std::ostream&, std::string, uint64_t) const’: ./libmaus2/util/DirectoryStructure.hpp:282:58: warning: variable ‘batchcnt’ set but not used [-Wunused-but-set-variable=] 282 | uint64_t batchcnt = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:183, from ./libmaus2/huffman/CanonicalEncoder.hpp:26, from ./libmaus2/huffman/RLEncoder.hpp:25, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22: ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 2]’: ./libmaus2/huffman/HuffmanSorting.hpp:860:55: required from here 860 | huffman::EncodeTable enctable ( root ); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:188: ./libmaus2/huffman/HuffmanSorting.hpp: In instantiation of ‘static void libmaus2::huffman::HuffmanSorting::uncompressHuffmanCoded(uint64_t*, uint64_t, uint64_t, uint64_t, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::HuffmanTreeNode*, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::EncodeTable&) [with unsigned int lookupwords = 2; uint64_t = long long unsigned int]’: ./libmaus2/huffman/HuffmanSorting.hpp:1091:27: required from here 1091 | uncompressHuffmanCoded(acode.get(), 0 /* bit offset */, lowhalf /* syms */, firsthighsym, enctable,dectable,root.get(),dectable0,dectable1,enctable0,enctable1); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/huffman/HuffmanSorting.hpp:534:42: warning: variable ‘alldecoffset’ set but not used [-Wunused-but-set-variable=] 534 | uint64_t alldecoffset = highdecoffset; | ^~~~~~~~~~~~ ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 1]’: ./libmaus2/huffman/CanonicalEncoder.hpp:219:116: required from here 219 | return ::libmaus2::huffman::EncodeTable<1>::unique_ptr_type(new ::libmaus2::huffman::EncodeTable<1>(Ptree.get())); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/wavelet/RlToHwtBase.hpp:30, from ./libmaus2/wavelet/RlToHwtTermRequest.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:44: ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp: In instantiation of ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTree(libmaus2::autoarray::AutoArray&, const std::string&, const std::string&, const libmaus2::huffman::HuffmanTree*, uint64_t) [with bool radixsort = true; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’: ./libmaus2/suffixsort/BwtMergeBlockSortRequest.hpp:862:90: required from ‘libmaus2::suffixsort::BwtMergeBlockSortResult libmaus2::suffixsort::BwtMergeBlockSortRequest::sortBlock(std::ostream*) const [with input_types_type = libmaus2::suffixsort::ByteInputTypes<32>; rl_encoder = libmaus2::huffman::RLEncoderTemplate, libmaus2::bitio::FastWriteBitWriterTemplate >, 128, 255, false> > >; std::ostream = std::basic_ostream]’ 862 | ::libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTree( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 863 | UT,tmpfilenames.getHWT(),tmpfileprefix,uhnode.get(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 864 | 1/* num threads */ | ~~~~~~~~~~~~~~~~~~ 865 | ); | ~ ./libmaus2/suffixsort/BwtMergeBlockSortRequest.hpp:979:79: required from ‘std::string libmaus2::suffixsort::BwtMergeBlockSortRequest::dispatch(std::ostream*) const [with rl_encoder = libmaus2::huffman::RLEncoderTemplate, libmaus2::bitio::FastWriteBitWriterTemplate >, 128, 255, false> > >; std::string = std::__cxx11::basic_string; std::ostream = std::basic_ostream]’ 979 | result = sortBlock,rl_encoder>(logstr); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BaseBlockSortThread.hpp:128:118: required from here 128 | block->sortresult = ::libmaus2::suffixsort::BwtMergeBlockSortResult::load(block->sortreq.dispatch(logstr)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:874:90: warning: variable ‘l_numsyms0’ set but not used [-Wunused-but-set-variable=] 874 | uint64_t l_numsyms0 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:879:90: warning: variable ‘r_numsyms1’ set but not used [-Wunused-but-set-variable=] 879 | uint64_t r_numsyms1 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:755:66: warning: variable ‘numsyms1’ set but not used [-Wunused-but-set-variable=] 755 | uint64_t numsyms1 = 0; | ^~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testbwtconstructionfasta test/testbwtconstructionfasta-testbwtconstructionfasta.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testbwtconstructionfasta test/testbwtconstructionfasta-testbwtconstructionfasta.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testarrayinput-testarrayinput.o `test -f 'test/testarrayinput.cpp' || echo './'`test/testarrayinput.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testarrayinput test/testarrayinput-testarrayinput.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testarrayinput test/testarrayinput-testarrayinput.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testsymcnt-testsymcnt.o `test -f 'test/testsymcnt.cpp' || echo './'`test/testsymcnt.cpp In file included from ./libmaus2/huffman/huffman.hpp:183, from ./libmaus2/huffman/CanonicalEncoder.hpp:26, from ./libmaus2/huffman/SymCountEncoder.hpp:26, from test/testsymcnt.cpp:18: ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 2]’: ./libmaus2/huffman/HuffmanSorting.hpp:860:55: required from here 860 | huffman::EncodeTable enctable ( root ); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:188: ./libmaus2/huffman/HuffmanSorting.hpp: In instantiation of ‘static void libmaus2::huffman::HuffmanSorting::uncompressHuffmanCoded(uint64_t*, uint64_t, uint64_t, uint64_t, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::HuffmanTreeNode*, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::EncodeTable&) [with unsigned int lookupwords = 2; uint64_t = long long unsigned int]’: ./libmaus2/huffman/HuffmanSorting.hpp:1091:27: required from here 1091 | uncompressHuffmanCoded(acode.get(), 0 /* bit offset */, lowhalf /* syms */, firsthighsym, enctable,dectable,root.get(),dectable0,dectable1,enctable0,enctable1); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/huffman/HuffmanSorting.hpp:534:42: warning: variable ‘alldecoffset’ set but not used [-Wunused-but-set-variable=] 534 | uint64_t alldecoffset = highdecoffset; | ^~~~~~~~~~~~ ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 1]’: ./libmaus2/huffman/CanonicalEncoder.hpp:219:116: required from here 219 | return ::libmaus2::huffman::EncodeTable<1>::unique_ptr_type(new ::libmaus2::huffman::EncodeTable<1>(Ptree.get())); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testsymcnt test/testsymcnt-testsymcnt.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testsymcnt test/testsymcnt-testsymcnt.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testgammapd-testgammapd.o `test -f 'test/testgammapd.cpp' || echo './'`test/testgammapd.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testgammapd test/testgammapd-testgammapd.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testgammapd test/testgammapd-testgammapd.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testdnasuffixtrav-testdnasuffixtrav.o `test -f 'test/testdnasuffixtrav.cpp' || echo './'`test/testdnasuffixtrav.cpp In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/util/IntervalTree.hpp:25, from ./libmaus2/gamma/GammaRLDecoder.hpp:28, from ./libmaus2/gamma/GammaRLEncoder.hpp:29, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:24, from ./libmaus2/suffixsort/bwtb3m/BwtMergeComputeSampledSA.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from test/testdnasuffixtrav.cpp:19: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/suffixsort/bwtb3m/GapArrayWrapper.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeIsaParallelBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:24: ./libmaus2/util/AtomicArray.hpp: At global scope: ./libmaus2/util/AtomicArray.hpp:45:43: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 45 | AtomicArray(AtomicArray const & O) = delete; | ^~~~~~~~~~~~~~~~~ ./libmaus2/util/AtomicArray.hpp:45:43: note: remove the ‘< >’ In file included from ./libmaus2/suffixsort/bwtb3m/BwtMergeIsaParallelBase.hpp:24: ./libmaus2/suffixsort/GapArrayByte.hpp: In member function ‘void libmaus2::suffixsort::GapArrayByte::flush()’: ./libmaus2/suffixsort/GapArrayByte.hpp:134:42: warning: variable ‘overflowcnt’ set but not used [-Wunused-but-set-variable=] 134 | uint64_t overflowcnt = 0; | ^~~~~~~~~~~ In file included from ./libmaus2/suffixsort/BwtMergeTempFileNameSet.hpp:27, from ./libmaus2/suffixsort/BwtMergeBlockSortResult.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:33: ./libmaus2/util/DirectoryStructure.hpp: In member function ‘std::string libmaus2::util::DirectoryStructure::printGenerate(std::ostream&, std::string, uint64_t) const’: ./libmaus2/util/DirectoryStructure.hpp:207:58: warning: variable ‘batchcnt’ set but not used [-Wunused-but-set-variable=] 207 | uint64_t batchcnt = 0; | ^~~~~~~~ ./libmaus2/util/DirectoryStructure.hpp: In member function ‘std::string libmaus2::util::DirectoryStructure::printRemove(std::ostream&, std::string, uint64_t) const’: ./libmaus2/util/DirectoryStructure.hpp:282:58: warning: variable ‘batchcnt’ set but not used [-Wunused-but-set-variable=] 282 | uint64_t batchcnt = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:183, from ./libmaus2/huffman/CanonicalEncoder.hpp:26, from ./libmaus2/huffman/RLEncoder.hpp:25, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22: ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 2]’: ./libmaus2/huffman/HuffmanSorting.hpp:860:55: required from here 860 | huffman::EncodeTable enctable ( root ); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:188: ./libmaus2/huffman/HuffmanSorting.hpp: In instantiation of ‘static void libmaus2::huffman::HuffmanSorting::uncompressHuffmanCoded(uint64_t*, uint64_t, uint64_t, uint64_t, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::HuffmanTreeNode*, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::EncodeTable&) [with unsigned int lookupwords = 2; uint64_t = long long unsigned int]’: ./libmaus2/huffman/HuffmanSorting.hpp:1091:27: required from here 1091 | uncompressHuffmanCoded(acode.get(), 0 /* bit offset */, lowhalf /* syms */, firsthighsym, enctable,dectable,root.get(),dectable0,dectable1,enctable0,enctable1); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/huffman/HuffmanSorting.hpp:534:42: warning: variable ‘alldecoffset’ set but not used [-Wunused-but-set-variable=] 534 | uint64_t alldecoffset = highdecoffset; | ^~~~~~~~~~~~ ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 1]’: ./libmaus2/huffman/CanonicalEncoder.hpp:219:116: required from here 219 | return ::libmaus2::huffman::EncodeTable<1>::unique_ptr_type(new ::libmaus2::huffman::EncodeTable<1>(Ptree.get())); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/wavelet/RlToHwtBase.hpp:30, from ./libmaus2/wavelet/RlToHwtTermRequest.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:44: ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp: In instantiation of ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTree(libmaus2::autoarray::AutoArray&, const std::string&, const std::string&, const libmaus2::huffman::HuffmanTree*, uint64_t) [with bool radixsort = true; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’: ./libmaus2/suffixsort/BwtMergeBlockSortRequest.hpp:862:90: required from ‘libmaus2::suffixsort::BwtMergeBlockSortResult libmaus2::suffixsort::BwtMergeBlockSortRequest::sortBlock(std::ostream*) const [with input_types_type = libmaus2::suffixsort::ByteInputTypes<32>; rl_encoder = libmaus2::huffman::RLEncoderTemplate, libmaus2::bitio::FastWriteBitWriterTemplate >, 128, 255, false> > >; std::ostream = std::basic_ostream]’ 862 | ::libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTree( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 863 | UT,tmpfilenames.getHWT(),tmpfileprefix,uhnode.get(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 864 | 1/* num threads */ | ~~~~~~~~~~~~~~~~~~ 865 | ); | ~ ./libmaus2/suffixsort/BwtMergeBlockSortRequest.hpp:979:79: required from ‘std::string libmaus2::suffixsort::BwtMergeBlockSortRequest::dispatch(std::ostream*) const [with rl_encoder = libmaus2::huffman::RLEncoderTemplate, libmaus2::bitio::FastWriteBitWriterTemplate >, 128, 255, false> > >; std::string = std::__cxx11::basic_string; std::ostream = std::basic_ostream]’ 979 | result = sortBlock,rl_encoder>(logstr); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BaseBlockSortThread.hpp:128:118: required from here 128 | block->sortresult = ::libmaus2::suffixsort::BwtMergeBlockSortResult::load(block->sortreq.dispatch(logstr)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:874:90: warning: variable ‘l_numsyms0’ set but not used [-Wunused-but-set-variable=] 874 | uint64_t l_numsyms0 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:879:90: warning: variable ‘r_numsyms1’ set but not used [-Wunused-but-set-variable=] 879 | uint64_t r_numsyms1 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:755:66: warning: variable ‘numsyms1’ set but not used [-Wunused-but-set-variable=] 755 | uint64_t numsyms1 = 0; | ^~~~~~~~ In file included from ./libmaus2/lz/StreamWrapperBuffer.hpp:23, from ./libmaus2/lz/StreamWrapper.hpp:22, from ./libmaus2/aio/PosixFdInput.hpp:26, from ./libmaus2/aio/PosixFdInputWrapper.hpp:22, from ./libmaus2/aio/PosixFdInputStream.hpp:22, from ./libmaus2/aio/PosixFdInputStreamFactory.hpp:23, from ./libmaus2/aio/InputStreamFactoryContainer.hpp:23, from test/testdnasuffixtrav.cpp:18: In static member function ‘static void libmaus2::autoarray::ArrayErase::erase(N*, uint64_t) [with N = libmaus2::rank::DNARankSuffixTreeNodeEnumeratorQueueElement]’, inlined from ‘libmaus2::autoarray::AutoArray::AutoArray(uint64_t, bool) [with N = libmaus2::rank::DNARankSuffixTreeNodeEnumeratorQueueElement; libmaus2::autoarray::alloc_type atype = libmaus2::autoarray::alloc_type_cxx; erase_type = libmaus2::autoarray::ArrayErase]’ at ./libmaus2/autoarray/AutoArray.hpp:921:23, inlined from ‘libmaus2::util::SimpleQueue<_value_type>::SimpleQueue() [with _value_type = libmaus2::rank::DNARankSuffixTreeNodeEnumeratorQueueElement]’ at ./libmaus2/util/SimpleQueue.hpp:105:6, inlined from ‘libmaus2::rank::DNARankSuffixTreeNodeEnumerator::DNARankSuffixTreeNodeEnumerator(libmaus2::rank::DNARank&)’ at ./libmaus2/rank/DNARankSuffixTreeNodeEnumerator.hpp:41:84, inlined from ‘void transform(const std::string&)’ at test/testdnasuffixtrav.cpp:55:62: ./libmaus2/autoarray/AutoArray.hpp:1152:33: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 1152 | array[i] = N(); | ^~~~~ ./libmaus2/autoarray/AutoArray.hpp: In function ‘void transform(const std::string&)’: ./libmaus2/autoarray/AutoArray.hpp:1152:44: note: ‘’ declared here 1152 | array[i] = N(); | ^~~ /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testdnasuffixtrav test/testdnasuffixtrav-testdnasuffixtrav.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testdnasuffixtrav test/testdnasuffixtrav-testdnasuffixtrav.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testserialisedsorting-testserialisedsorting.o `test -f 'test/testserialisedsorting.cpp' || echo './'`test/testserialisedsorting.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/16/algorithm:63, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/aio/BufferedOutput.hpp:23, from ./libmaus2/sorting/MergingReadBack.hpp:23, from ./libmaus2/sorting/SortingBufferedOutputFile.hpp:22, from test/testserialisedsorting.cpp:18: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h: In function ‘constexpr void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = less]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1884:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1884 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1884:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1898:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1898 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:61: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h: In function ‘constexpr void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Distance = int; _Tp = pair; _Compare = libmaus2::sorting::SerialisingMergingReadBack >::HeapOrderAdapter]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:229:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 229 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In function ‘constexpr void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = less]’, inlined from ‘constexpr void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:4817:18, inlined from ‘void checkSortingSerialised()’ at test/testserialisedsorting.cpp:72:11: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1913:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1913 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1914 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1915 | __comp); | ~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testserialisedsorting test/testserialisedsorting-testserialisedsorting.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testserialisedsorting test/testserialisedsorting-testserialisedsorting.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testbamnumericalindex-testbamnumericalindex.o `test -f 'test/testbamnumericalindex.cpp' || echo './'`test/testbamnumericalindex.cpp In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/bambam/BamAuxFilterVector.hpp:22, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:27, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from test/testbamnumericalindex.cpp:19: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/bambam/CigarStringParser.hpp:25, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ In file included from ./libmaus2/bambam/BamAlignmentDecoder.hpp:24: ./libmaus2/bambam/BamHeaderLowMem.hpp: In member function ‘void libmaus2::bambam::BamHeaderLowMem::setupFromText()’: ./libmaus2/bambam/BamHeaderLowMem.hpp:366:58: warning: variable ‘ln’ set but not used [-Wunused-but-set-variable=] 366 | uint64_t ln = 0; | ^~ In file included from /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/16/algorithm:63, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h: In function ‘constexpr void std::__pop_heap(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Compare = libmaus2::lz::BgzfThreadQueueElementHeapComparator]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:257:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 257 | __pop_heap(_RandomAccessIterator __first, _RandomAccessIterator __last, | ^~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:257:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:257:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h: In function ‘constexpr void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = less]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1884:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1884 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1884:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1898:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1898 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘constexpr void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = less]’, inlined from ‘constexpr void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:4817:18, inlined from ‘void libmaus2::trie::LinearHashTrie<_char_type, _id_type>::fillDepthParent() [with _char_type = char; _id_type = unsigned int]’ at ./libmaus2/trie/TrieState.hpp:261:14: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1913:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1913 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1914 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1915 | __comp); | ~~~~~~~ In file included from ./libmaus2/bambam/BamHeader.hpp:36, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:30: ./libmaus2/hashing/ConstantStringHash.hpp: In constructor ‘libmaus2::hashing::ConstantStringHash::ConstantStringHash(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]’: ./libmaus2/hashing/ConstantStringHash.hpp:96:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 96 | ConstantStringHash(iterator ita, iterator ite, uint64_t const maxn = 64*1024) | ^~~~~~~~~~~~~~~~~~ ./libmaus2/hashing/ConstantStringHash.hpp:96:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h: In function ‘constexpr void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Compare = libmaus2::lz::BgzfInflateBlockIdComparator]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:229:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 229 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In function ‘constexpr void std::pop_heap(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator > >; _Compare = libmaus2::lz::BgzfThreadQueueElementHeapComparator]’, inlined from ‘void std::priority_queue<_Tp, _Sequence, _Compare>::pop() [with _Tp = libmaus2::lz::BgzfThreadQueueElement; _Sequence = std::vector >; _Compare = libmaus2::lz::BgzfThreadQueueElementHeapComparator]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_queue.h:894:15, inlined from ‘libmaus2::parallel::StdTerminatableSynchronousHeap<_value_type, _compare>::value_type libmaus2::parallel::StdTerminatableSynchronousHeap<_value_type, _compare>::deque() [with _value_type = libmaus2::lz::BgzfThreadQueueElement; _compare = libmaus2::lz::BgzfThreadQueueElementHeapComparator]’ at ./libmaus2/parallel/StdTerminatableSynchronousHeap.hpp:117:12, inlined from ‘virtual void libmaus2::lz::BgzfInflateParallelThreadCallable::run()’ at ./libmaus2/lz/BgzfInflateParallelThread.hpp:59:54: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:334:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 334 | std::__pop_heap(__first, __last, __last, __comp); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘constexpr void std::pop_heap(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator > >; _Compare = libmaus2::lz::BgzfThreadQueueElementHeapComparator]’, inlined from ‘void std::priority_queue<_Tp, _Sequence, _Compare>::pop() [with _Tp = libmaus2::lz::BgzfThreadQueueElement; _Sequence = std::vector >; _Compare = libmaus2::lz::BgzfThreadQueueElementHeapComparator]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_queue.h:894:15, inlined from ‘libmaus2::parallel::StdTerminatableSynchronousHeap<_value_type, _compare>::value_type libmaus2::parallel::StdTerminatableSynchronousHeap<_value_type, _compare>::deque() [with _value_type = libmaus2::lz::BgzfThreadQueueElement; _compare = libmaus2::lz::BgzfThreadQueueElementHeapComparator]’ at ./libmaus2/parallel/StdTerminatableSynchronousHeap.hpp:117:12, inlined from ‘virtual void libmaus2::lz::BgzfInflateDeflateParallelThreadCallable::run()’ at ./libmaus2/lz/BgzfInflateDeflateParallelThread.hpp:297:54: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:334:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 334 | std::__pop_heap(__first, __last, __last, __comp); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In static member function ‘static libmaus2::hashing::ConstantStringHash::shared_ptr_type libmaus2::hashing::ConstantStringHash::constructShared(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]’, inlined from ‘void libmaus2::bambam::BamHeader::initSetup()’ at ./libmaus2/bambam/BamHeader.hpp:965:67: ./libmaus2/hashing/ConstantStringHash.hpp:86:59: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 86 | shared_ptr_type s(new this_type(ita,ite,maxn)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testbamnumericalindex test/testbamnumericalindex-testbamnumericalindex.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testbamnumericalindex test/testbamnumericalindex-testbamnumericalindex.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testnpl-testnpl.o `test -f 'test/testnpl.cpp' || echo './'`test/testnpl.cpp In file included from ./libmaus2/lcs/Aligner.hpp:21, from ./libmaus2/lcs/NPNoTrace.hpp:21, from ./libmaus2/lcs/NPLinMem.hpp:21, from test/testnpl.cpp:18: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ In file included from test/testnpl.cpp:21: ./libmaus2/lcs/NNPCor.hpp: In instantiation of ‘libmaus2::lcs::NNPAlignResult libmaus2::lcs::NNPCor::alignLinMem(iterator, iterator, uint64_t, iterator, iterator, uint64_t, libmaus2::lcs::AlignmentTraceContainer&, uint64_t, bool) [with iterator = __gnu_cxx::__normal_iterator >; uint64_t = long long unsigned int]’: test/testnpl.cpp:118:77: required from here 118 | libmaus2::lcs::NNPAlignResult nres = cor.alignLinMem(a.begin(),a.end(),0,b.begin(),b.end(),0,ATC); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/lcs/NNPCor.hpp:1985:42: warning: variable ‘ed’ set but not used [-Wunused-but-set-variable=] 1985 | uint64_t ed = 0; | ^~ ./libmaus2/lcs/NNPCor.hpp: In instantiation of ‘libmaus2::lcs::NNPAlignResult libmaus2::lcs::NNPCor::alignLinMemForward(std::pair, iterator, iterator, iterator, iterator, libmaus2::lcs::AlignmentTraceContainer&, uint64_t, bool) [with iterator = __gnu_cxx::__normal_iterator >; uint64_t = long long unsigned int]’: ./libmaus2/lcs/NNPCor.hpp:2219:40: required from ‘libmaus2::lcs::NNPAlignResult libmaus2::lcs::NNPCor::alignLinMemForward(iterator, iterator, iterator, iterator, libmaus2::lcs::AlignmentTraceContainer&, uint64_t, bool) [with iterator = __gnu_cxx::__normal_iterator >; uint64_t = long long unsigned int]’ 2219 | return alignLinMemForward(SLA,ab,ae,bb,be,ATC,d,corclip); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ test/testnpl.cpp:101:84: required from here 101 | libmaus2::lcs::NNPAlignResult nres = cor.alignLinMemForward(a.begin(),a.end(),b.begin(),b.end(),ATC); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/lcs/NNPCor.hpp:2114:42: warning: variable ‘ed’ set but not used [-Wunused-but-set-variable=] 2114 | uint64_t ed = 0; | ^~ /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testnpl test/testnpl-testnpl.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testnpl test/testnpl-testnpl.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testkcnt-testkcnt.o `test -f 'test/testkcnt.cpp' || echo './'`test/testkcnt.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/16/algorithm:63, from ./libmaus2/fastx/acgtnMap.hpp:26, from ./libmaus2/fastx/LineBufferFastAReader.hpp:22, from ./libmaus2/fastx/KmerCount.hpp:23, from test/testkcnt.cpp:18: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h: In function ‘constexpr void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Distance = int; _Tp = pair; _Compare = libmaus2::sorting::SerialisingMergingReadBack >::HeapOrderAdapter]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:229:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 229 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testkcnt test/testkcnt-testkcnt.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testkcnt test/testkcnt-testkcnt.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testintervaltree-testintervaltree.o `test -f 'test/testintervaltree.cpp' || echo './'`test/testintervaltree.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testintervaltree test/testintervaltree-testintervaltree.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testintervaltree test/testintervaltree-testintervaltree.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testbamgetrefreg-testbamgetrefreg.o `test -f 'test/testbamgetrefreg.cpp' || echo './'`test/testbamgetrefreg.cpp In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/bambam/BamAuxFilterVector.hpp:22, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:27, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from test/testbamgetrefreg.cpp:20: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/bambam/CigarStringParser.hpp:25, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ In file included from ./libmaus2/bambam/BamAlignmentDecoder.hpp:24: ./libmaus2/bambam/BamHeaderLowMem.hpp: In member function ‘void libmaus2::bambam::BamHeaderLowMem::setupFromText()’: ./libmaus2/bambam/BamHeaderLowMem.hpp:366:58: warning: variable ‘ln’ set but not used [-Wunused-but-set-variable=] 366 | uint64_t ln = 0; | ^~ In file included from /usr/arm-linux-gnueabihf/include/c++/16/algorithm:63, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/util/StringSerialisation.hpp:30, from ./libmaus2/util/ArgInfo.hpp:31, from test/testbamgetrefreg.cpp:19: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h: In function ‘constexpr void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = less]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1884:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1884 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1884:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1898:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1898 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘constexpr void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = less]’, inlined from ‘constexpr void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:4817:18, inlined from ‘void libmaus2::trie::LinearHashTrie<_char_type, _id_type>::fillDepthParent() [with _char_type = char; _id_type = unsigned int]’ at ./libmaus2/trie/TrieState.hpp:261:14: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1913:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1913 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1914 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1915 | __comp); | ~~~~~~~ In file included from ./libmaus2/bambam/BamHeader.hpp:36, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:30: ./libmaus2/hashing/ConstantStringHash.hpp: In constructor ‘libmaus2::hashing::ConstantStringHash::ConstantStringHash(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]’: ./libmaus2/hashing/ConstantStringHash.hpp:96:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 96 | ConstantStringHash(iterator ita, iterator ite, uint64_t const maxn = 64*1024) | ^~~~~~~~~~~~~~~~~~ ./libmaus2/hashing/ConstantStringHash.hpp:96:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In static member function ‘static libmaus2::hashing::ConstantStringHash::shared_ptr_type libmaus2::hashing::ConstantStringHash::constructShared(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]’, inlined from ‘void libmaus2::bambam::BamHeader::initSetup()’ at ./libmaus2/bambam/BamHeader.hpp:965:67: ./libmaus2/hashing/ConstantStringHash.hpp:86:59: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 86 | shared_ptr_type s(new this_type(ita,ite,maxn)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testbamgetrefreg test/testbamgetrefreg-testbamgetrefreg.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testbamgetrefreg test/testbamgetrefreg-testbamgetrefreg.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o test/teststringgraph-teststringgraph.o `test -f 'test/teststringgraph.cpp' || echo './'`test/teststringgraph.cpp In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/util/IntervalTree.hpp:25, from ./libmaus2/fastx/FastInterval.hpp:25, from ./libmaus2/fastx/FastAReader.hpp:31, from test/teststringgraph.cpp:20: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from /usr/arm-linux-gnueabihf/include/c++/16/algorithm:63, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/dazzler/db/TrackAnno.hpp:22, from ./libmaus2/dazzler/db/Track.hpp:21, from ./libmaus2/dazzler/db/DatabaseFile.hpp:23, from ./libmaus2/dazzler/stringgraph/StringGraph.hpp:22, from test/teststringgraph.cpp:18: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h: In function ‘constexpr void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = less]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1770:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1770 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1770:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:61: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h: In function ‘constexpr void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Distance = int; _Tp = pair; _Compare = less]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_heap.h:229:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 229 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h: In function ‘constexpr void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Size = int; _Compare = less]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1884:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1884 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1884:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1898:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1898 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘constexpr void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = less]’, inlined from ‘constexpr void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator*, vector > >]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:4817:18, inlined from ‘libmaus2::dazzler::stringgraph::StringGraph::StringGraph(std::istream&)’ at ./libmaus2/dazzler/stringgraph/StringGraph.hpp:52:15: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1913:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1913 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1914 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1915 | __comp); | ~~~~~~~ In function ‘constexpr void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = less]’, inlined from ‘constexpr void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = less]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1916:31, inlined from ‘constexpr void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator*, vector > >]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:4817:18, inlined from ‘libmaus2::dazzler::stringgraph::StringGraph::StringGraph(std::istream&)’ at ./libmaus2/dazzler/stringgraph/StringGraph.hpp:52:15: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1821:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1821 | std::__insertion_sort(__first, __first + __threshold, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1826:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1826 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘constexpr void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = less]’, inlined from ‘constexpr void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator*, vector > >]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:4817:18, inlined from ‘libmaus2::dazzler::stringgraph::StringGraph::StringGraph(std::istream&)’ at ./libmaus2/dazzler/stringgraph/StringGraph.hpp:53:15: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1913:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1913 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1914 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1915 | __comp); | ~~~~~~~ In function ‘constexpr void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = less]’, inlined from ‘constexpr void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = less]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1916:31, inlined from ‘constexpr void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator*, vector > >]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:4817:18, inlined from ‘libmaus2::dazzler::stringgraph::StringGraph::StringGraph(std::istream&)’ at ./libmaus2/dazzler/stringgraph/StringGraph.hpp:53:15: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1821:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1821 | std::__insertion_sort(__first, __first + __threshold, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1826:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1826 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o teststringgraph test/teststringgraph-teststringgraph.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/teststringgraph test/teststringgraph-teststringgraph.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testlognormal-testlognormal.o `test -f 'test/testlognormal.cpp' || echo './'`test/testlognormal.cpp In file included from test/testlognormal.cpp:19: ./libmaus2/random/LogNormalRandom.hpp: In static member function ‘static std::pair libmaus2::random::LogNormalRandom::estimateParameters(const std::vector&)’: ./libmaus2/random/LogNormalRandom.hpp:132:25: note: parameter passing for argument of type ‘std::pair’ when C++17 is enabled changed to match C++14 in GCC 10.1 132 | { | ^ In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/util/IntervalTree.hpp:25, from ./libmaus2/fastx/FastInterval.hpp:25, from ./libmaus2/fastx/FastAReader.hpp:31, from ./libmaus2/fastx/StreamFastAReader.hpp:23, from test/testlognormal.cpp:20: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testlognormal test/testlognormal-testlognormal.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testlognormal test/testlognormal-testlognormal.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testConstantSumCombinatorics-testConstantSumCombinatorics.o `test -f 'test/testConstantSumCombinatorics.cpp' || echo './'`test/testConstantSumCombinatorics.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testConstantSumCombinatorics test/testConstantSumCombinatorics-testConstantSumCombinatorics.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testConstantSumCombinatorics test/testConstantSumCombinatorics-testConstantSumCombinatorics.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testmatrix-testmatrix.o `test -f 'test/testmatrix.cpp' || echo './'`test/testmatrix.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testmatrix test/testmatrix-testmatrix.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testmatrix test/testmatrix-testmatrix.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testconvpowercache-testconvpowercache.o `test -f 'test/testconvpowercache.cpp' || echo './'`test/testconvpowercache.cpp In file included from test/testconvpowercache.cpp:19: ./libmaus2/math/Convolution.hpp: In static member function ‘static void libmaus2::math::Convolution::bitReverseReorder(iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator*, std::vector > >]’: ./libmaus2/math/Convolution.hpp:74:37: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 74 | static void bitReverseReorder(iterator A, uint64_t const n) | ^~~~~~~~~~~~~~~~~ ./libmaus2/math/Convolution.hpp: In static member function ‘static void libmaus2::math::Convolution::fft(iterator, uint64_t, bool) [with iterator = __gnu_cxx::__normal_iterator*, std::vector > >]’: ./libmaus2/math/Convolution.hpp:90:37: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 90 | static void fft(iterator A, uint64_t const n, bool const reverse = false) | ^~~ /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testconvpowercache test/testconvpowercache-testconvpowercache.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testconvpowercache test/testconvpowercache-testconvpowercache.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testlassort-testlassort.o `test -f 'test/testlassort.cpp' || echo './'`test/testlassort.cpp In file included from ./libmaus2/lcs/Aligner.hpp:21, from ./libmaus2/dazzler/align/Overlap.hpp:22, from ./libmaus2/dazzler/align/OverlapData.hpp:23, from ./libmaus2/dazzler/align/OverlapParser.hpp:22, from ./libmaus2/dazzler/align/SimpleOverlapParser.hpp:22, from ./libmaus2/dazzler/align/LasSort2.hpp:21, from test/testlassort.cpp:20: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ In file included from ./libmaus2/dazzler/align/OverlapIndexer.hpp:30, from ./libmaus2/dazzler/align/LasSort2.hpp:26: ./libmaus2/index/ExternalMemoryIndexDecoder.hpp: In instantiation of ‘void libmaus2::index::ExternalMemoryIndexDecoder<_data_type, _base_level_log, _inner_level_log, _comparator>::setup(uint64_t) [with _data_type = libmaus2::dazzler::align::OverlapMeta; unsigned int _base_level_log = 8; unsigned int _inner_level_log = 3; _comparator = std::less; uint64_t = long long unsigned int]’: ./libmaus2/index/ExternalMemoryIndexDecoder.hpp:183:5: required from ‘libmaus2::index::ExternalMemoryIndexDecoder<_data_type, _base_level_log, _inner_level_log, _comparator>::ExternalMemoryIndexDecoder(const std::string&, uint64_t) [with _data_type = libmaus2::dazzler::align::OverlapMeta; unsigned int _base_level_log = 8; unsigned int _inner_level_log = 3; _comparator = std::less; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’ 183 | setup(rcache_thres); | ^~~~~ ./libmaus2/dazzler/align/OverlapIndexer.hpp:109:108: required from here 109 | libmaus2::index::ExternalMemoryIndexDecoder EMID(indexname); | ^ ./libmaus2/index/ExternalMemoryIndexDecoder.hpp:99:46: warning: variable ‘numcache’ set but not used [-Wunused-but-set-variable=] 99 | unsigned int numcache = 0; | ^~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testlassort test/testlassort-testlassort.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testlassort test/testlassort-testlassort.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testnnplocalaligner-testnnplocalaligner.o `test -f 'test/testnnplocalaligner.cpp' || echo './'`test/testnnplocalaligner.cpp In file included from ./libmaus2/lcs/Aligner.hpp:21, from ./libmaus2/dazzler/align/Overlap.hpp:22, from test/testnnplocalaligner.cpp:21: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ In file included from ./libmaus2/dazzler/align/OverlapIndexer.hpp:30, from ./libmaus2/dazzler/align/AlignmentWriter.hpp:21, from test/testnnplocalaligner.cpp:24: ./libmaus2/index/ExternalMemoryIndexDecoder.hpp: In instantiation of ‘void libmaus2::index::ExternalMemoryIndexDecoder<_data_type, _base_level_log, _inner_level_log, _comparator>::setup(uint64_t) [with _data_type = libmaus2::dazzler::align::OverlapMeta; unsigned int _base_level_log = 8; unsigned int _inner_level_log = 3; _comparator = std::less; uint64_t = long long unsigned int]’: ./libmaus2/index/ExternalMemoryIndexDecoder.hpp:183:5: required from ‘libmaus2::index::ExternalMemoryIndexDecoder<_data_type, _base_level_log, _inner_level_log, _comparator>::ExternalMemoryIndexDecoder(const std::string&, uint64_t) [with _data_type = libmaus2::dazzler::align::OverlapMeta; unsigned int _base_level_log = 8; unsigned int _inner_level_log = 3; _comparator = std::less; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’ 183 | setup(rcache_thres); | ^~~~~ ./libmaus2/dazzler/align/OverlapIndexer.hpp:109:108: required from here 109 | libmaus2::index::ExternalMemoryIndexDecoder EMID(indexname); | ^ ./libmaus2/index/ExternalMemoryIndexDecoder.hpp:99:46: warning: variable ‘numcache’ set but not used [-Wunused-but-set-variable=] 99 | unsigned int numcache = 0; | ^~~~~~~~ In file included from ./libmaus2/lcs/NNPCor.hpp:22, from ./libmaus2/lcs/NNPCorLocalAligner.hpp:21, from test/testnnplocalaligner.cpp:22: ./libmaus2/lcs/NNPTraceContainer.hpp: In static member function ‘static uint64_t libmaus2::lcs::NNPTraceContainer::getCommonTracePoints(iterator, iterator, libmaus2::autoarray::AutoArray&, libmaus2::autoarray::AutoArray&, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >*, std::vector > > >]’: ./libmaus2/lcs/NNPTraceContainer.hpp:1388:41: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >*, std::vector > > >’ changed in GCC 7.1 1388 | static uint64_t getCommonTracePoints( | ^~~~~~~~~~~~~~~~~~~~ ./libmaus2/lcs/NNPTraceContainer.hpp:1388:41: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >*, std::vector > > >’ changed in GCC 7.1 ./libmaus2/lcs/NNPCorLocalAligner.hpp: In member function ‘void libmaus2::lcs::NNPCorLocalAligner::filterAlignments(std::vector > >&, iterator, iterator) [with iterator = __gnu_cxx::__normal_iterator >]’: ./libmaus2/lcs/NNPCorLocalAligner.hpp:674:120: note: parameter passing for argument of type ‘std::vector > >::iterator’ changed in GCC 7.1 674 | uint64_t const ashareo = libmaus2::lcs::NNPTraceContainer::getCommonTracePoints(LLV.begin(),LLV.end(),AT,Ashare,64); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testnnplocalaligner test/testnnplocalaligner-testnnplocalaligner.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testnnplocalaligner test/testnnplocalaligner-testnnplocalaligner.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testBamRawDecoder-testBamRawDecoder.o `test -f 'test/testBamRawDecoder.cpp' || echo './'`test/testBamRawDecoder.cpp In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/bambam/BamAuxFilterVector.hpp:22, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:27, from test/testBamRawDecoder.cpp:21: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/bambam/CigarStringParser.hpp:25, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/16/algorithm:63, from ./libmaus2/util/ArgParser.hpp:24, from test/testBamRawDecoder.cpp:19: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h: In function ‘constexpr void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = less]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1884:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1884 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1884:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1898:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1898 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘constexpr void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = less]’, inlined from ‘constexpr void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ at /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:4817:18, inlined from ‘void libmaus2::trie::LinearHashTrie<_char_type, _id_type>::fillDepthParent() [with _char_type = char; _id_type = unsigned int]’ at ./libmaus2/trie/TrieState.hpp:261:14: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1913:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1913 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1914 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1915 | __comp); | ~~~~~~~ In file included from ./libmaus2/bambam/BamHeader.hpp:36, from ./libmaus2/bambam/BamRawDecoder.hpp:21, from test/testBamRawDecoder.cpp:20: ./libmaus2/hashing/ConstantStringHash.hpp: In constructor ‘libmaus2::hashing::ConstantStringHash::ConstantStringHash(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]’: ./libmaus2/hashing/ConstantStringHash.hpp:96:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 96 | ConstantStringHash(iterator ita, iterator ite, uint64_t const maxn = 64*1024) | ^~~~~~~~~~~~~~~~~~ ./libmaus2/hashing/ConstantStringHash.hpp:96:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In static member function ‘static libmaus2::hashing::ConstantStringHash::shared_ptr_type libmaus2::hashing::ConstantStringHash::constructShared(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]’, inlined from ‘void libmaus2::bambam::BamHeader::initSetup()’ at ./libmaus2/bambam/BamHeader.hpp:965:67: ./libmaus2/hashing/ConstantStringHash.hpp:86:59: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 86 | shared_ptr_type s(new this_type(ita,ite,maxn)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testBamRawDecoder test/testBamRawDecoder-testBamRawDecoder.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testBamRawDecoder test/testBamRawDecoder-testBamRawDecoder.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testpanic-testpanic.o `test -f 'test/testpanic.cpp' || echo './'`test/testpanic.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testpanic test/testpanic-testpanic.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testpanic test/testpanic-testpanic.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testavlset-testavlset.o `test -f 'test/testavlset.cpp' || echo './'`test/testavlset.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/16/algorithm:63, from test/testavlset.cpp:19: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h: In function ‘constexpr void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = less]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1884:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1884 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1884:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1898:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1898 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h: In function ‘constexpr void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = less]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1908 | __sort(_RandomAccessIterator __first, _RandomAccessIterator __last, | ^~~~~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:1913:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1913 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1914 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1915 | __comp); | ~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/16/set:65, from test/testavlset.cpp:27: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_set.h: In constructor ‘std::set<_Key, _Compare, _Alloc>::set(_InputIterator, _InputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _Key = long long unsigned int; _Compare = std::less; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_set.h:197:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 197 | set(_InputIterator __first, _InputIterator __last) | ^~~ /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_set.h:197:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 test/testavlset.cpp: In function ‘void runtest() [with tree_type = libmaus2::avl::AtomicAVLSet]’: test/testavlset.cpp:381:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 381 | std::set ST(VT.begin(),VT.end()); | ^~ In function ‘constexpr void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’, inlined from ‘void runtest() [with tree_type = libmaus2::avl::AtomicAVLSet]’ at test/testavlset.cpp:416:11: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:4817:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 4817 | std::__sort(__first, __last, __gnu_cxx::__ops::less()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ test/testavlset.cpp: In function ‘void testatomicavlkeyptrset()’: test/testavlset.cpp:70:50: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 70 | std::set ST(VT.begin(),VT.end()); | ^ In function ‘constexpr void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’, inlined from ‘void testatomicavlkeyptrset()’ at test/testavlset.cpp:107:11: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:4817:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 4817 | std::__sort(__first, __last, __gnu_cxx::__ops::less()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ test/testavlset.cpp: In function ‘void runtest() [with tree_type = libmaus2::avl::AVLSet]’: test/testavlset.cpp:381:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 381 | std::set ST(VT.begin(),VT.end()); | ^~ In function ‘constexpr void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’, inlined from ‘void runtest() [with tree_type = libmaus2::avl::AVLSet]’ at test/testavlset.cpp:416:11: /usr/arm-linux-gnueabihf/include/c++/16/bits/stl_algo.h:4817:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 4817 | std::__sort(__first, __last, __gnu_cxx::__ops::less()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testavlset test/testavlset-testavlset.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testavlset test/testavlset-testavlset.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testlibcurl-testlibcurl.o `test -f 'test/testlibcurl.cpp' || echo './'`test/testlibcurl.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testlibcurl test/testlibcurl-testlibcurl.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testlibcurl test/testlibcurl-testlibcurl.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testRunLengthBitVector-testRunLengthBitVector.o `test -f 'test/testRunLengthBitVector.cpp' || echo './'`test/testRunLengthBitVector.cpp test/testRunLengthBitVector.cpp: In function ‘void testRunLengthBitVector(const libmaus2::util::ArgParser&)’: test/testRunLengthBitVector.cpp:124:34: warning: variable ‘runsum’ set but not used [-Wunused-but-set-variable=] 124 | uint64_t runsum = 0; | ^~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:183, from ./libmaus2/huffman/CanonicalEncoder.hpp:26, from ./libmaus2/huffman/RLDecoder.hpp:27, from test/testRunLengthBitVector.cpp:19: ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 2]’: ./libmaus2/huffman/HuffmanSorting.hpp:860:55: required from here 860 | huffman::EncodeTable enctable ( root ); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:188: ./libmaus2/huffman/HuffmanSorting.hpp: In instantiation of ‘static void libmaus2::huffman::HuffmanSorting::uncompressHuffmanCoded(uint64_t*, uint64_t, uint64_t, uint64_t, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::HuffmanTreeNode*, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::EncodeTable&) [with unsigned int lookupwords = 2; uint64_t = long long unsigned int]’: ./libmaus2/huffman/HuffmanSorting.hpp:1091:27: required from here 1091 | uncompressHuffmanCoded(acode.get(), 0 /* bit offset */, lowhalf /* syms */, firsthighsym, enctable,dectable,root.get(),dectable0,dectable1,enctable0,enctable1); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/huffman/HuffmanSorting.hpp:534:42: warning: variable ‘alldecoffset’ set but not used [-Wunused-but-set-variable=] 534 | uint64_t alldecoffset = highdecoffset; | ^~~~~~~~~~~~ ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 1]’: ./libmaus2/huffman/CanonicalEncoder.hpp:219:116: required from here 219 | return ::libmaus2::huffman::EncodeTable<1>::unique_ptr_type(new ::libmaus2::huffman::EncodeTable<1>(Ptree.get())); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testRunLengthBitVector test/testRunLengthBitVector-testRunLengthBitVector.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testRunLengthBitVector test/testRunLengthBitVector-testRunLengthBitVector.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testnplself-testnplself.o `test -f 'test/testnplself.cpp' || echo './'`test/testnplself.cpp In file included from ./libmaus2/lcs/Aligner.hpp:21, from ./libmaus2/lcs/NPLSelf.hpp:21, from test/testnplself.cpp:18: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testnplself test/testnplself-testnplself.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testnplself test/testnplself-testnplself.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testCopy-testCopy.o `test -f 'test/testCopy.cpp' || echo './'`test/testCopy.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testCopy test/testCopy-testCopy.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testCopy test/testCopy-testCopy.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testprotalign-testprotalign.o `test -f 'test/testprotalign.cpp' || echo './'`test/testprotalign.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testprotalign test/testprotalign-testprotalign.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testprotalign test/testprotalign-testprotalign.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testparasail-testparasail.o `test -f 'test/testparasail.cpp' || echo './'`test/testparasail.cpp In file included from ./libmaus2/protein/ProteinAlignment.hpp:26, from test/testparasail.cpp:18: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testparasail test/testparasail-testparasail.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: arm-linux-gnueabihf-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testparasail test/testparasail-testparasail.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread make[3]: Leaving directory '/build/reproducible-path/libmaus2-2.0.813+ds/src' make[3]: Entering directory '/build/reproducible-path/libmaus2-2.0.813+ds' make[3]: Leaving directory '/build/reproducible-path/libmaus2-2.0.813+ds' make[2]: Leaving directory '/build/reproducible-path/libmaus2-2.0.813+ds' make[1]: Leaving directory '/build/reproducible-path/libmaus2-2.0.813+ds' dh: command-omitted: The call to "dh_auto_test -a" was omitted due to "DEB_BUILD_OPTIONS=nocheck" create-stamp debian/debhelper-build-stamp dh_prep -a dh_auto_install -a make -j1 install DESTDIR=/build/reproducible-path/libmaus2-2.0.813\+ds/debian/tmp AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/build/reproducible-path/libmaus2-2.0.813+ds' Making install in src make[2]: Entering directory '/build/reproducible-path/libmaus2-2.0.813+ds/src' make[3]: Entering directory '/build/reproducible-path/libmaus2-2.0.813+ds/src' /usr/bin/mkdir -p '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/arm-linux-gnueabihf' /bin/bash ../libtool --mode=install /usr/bin/install -c libmaus2_arch.la libmaus2_posix.la libmaus2_demangle.la libmaus2_stacktrace.la libmaus2_exception.la libmaus2_autoarray.la libmaus2_parallel.la libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/arm-linux-gnueabihf' libtool: install: /usr/bin/install -c .libs/libmaus2_arch.so.2.0.813 /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/arm-linux-gnueabihf/libmaus2_arch.so.2.0.813 libtool: install: (cd /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libmaus2_arch.so.2.0.813 libmaus2_arch.so.2 || { rm -f libmaus2_arch.so.2 && ln -s libmaus2_arch.so.2.0.813 libmaus2_arch.so.2; }; }) libtool: install: (cd /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libmaus2_arch.so.2.0.813 libmaus2_arch.so || { rm -f libmaus2_arch.so && ln -s libmaus2_arch.so.2.0.813 libmaus2_arch.so; }; }) libtool: install: /usr/bin/install -c .libs/libmaus2_arch.lai /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/arm-linux-gnueabihf/libmaus2_arch.la libtool: install: /usr/bin/install -c .libs/libmaus2_posix.so.2.0.813 /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/arm-linux-gnueabihf/libmaus2_posix.so.2.0.813 libtool: install: (cd /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libmaus2_posix.so.2.0.813 libmaus2_posix.so.2 || { rm -f libmaus2_posix.so.2 && ln -s libmaus2_posix.so.2.0.813 libmaus2_posix.so.2; }; }) libtool: install: (cd /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libmaus2_posix.so.2.0.813 libmaus2_posix.so || { rm -f libmaus2_posix.so && ln -s libmaus2_posix.so.2.0.813 libmaus2_posix.so; }; }) libtool: install: /usr/bin/install -c .libs/libmaus2_posix.lai /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/arm-linux-gnueabihf/libmaus2_posix.la libtool: install: /usr/bin/install -c .libs/libmaus2_demangle.so.2.0.813 /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/arm-linux-gnueabihf/libmaus2_demangle.so.2.0.813 libtool: install: (cd /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libmaus2_demangle.so.2.0.813 libmaus2_demangle.so.2 || { rm -f libmaus2_demangle.so.2 && ln -s libmaus2_demangle.so.2.0.813 libmaus2_demangle.so.2; }; }) libtool: install: (cd /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libmaus2_demangle.so.2.0.813 libmaus2_demangle.so || { rm -f libmaus2_demangle.so && ln -s libmaus2_demangle.so.2.0.813 libmaus2_demangle.so; }; }) libtool: install: /usr/bin/install -c .libs/libmaus2_demangle.lai /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/arm-linux-gnueabihf/libmaus2_demangle.la libtool: warning: relinking 'libmaus2_stacktrace.la' libtool: install: (cd /build/reproducible-path/libmaus2-2.0.813+ds/src; /bin/bash "/build/reproducible-path/libmaus2-2.0.813+ds/libtool" --tag CXX --mode=relink arm-linux-gnueabihf-g++ -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -version-info 2:813:0 -L/lib -Wl,-z,relro -Wl,-z,now -o libmaus2_stacktrace.la -rpath /usr/lib/arm-linux-gnueabihf libmaus2/stacktrace/la-StackTrace.lo libmaus2/stacktrace/la-StackTraceBufferContainer.lo libmaus2_posix.la libmaus2_demangle.la -lz -inst-prefix-dir /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp) libtool: relink: arm-linux-gnueabihf-g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc-cross/arm-linux-gnueabihf/16/../../../../arm-linux-gnueabihf/lib/crti.o /usr/lib/gcc-cross/arm-linux-gnueabihf/16/crtbeginS.o libmaus2/stacktrace/.libs/la-StackTrace.o libmaus2/stacktrace/.libs/la-StackTraceBufferContainer.o -L/lib -L/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -lmaus2_posix -lmaus2_demangle -lz -L/usr/lib/gcc-cross/arm-linux-gnueabihf/16 -L/usr/lib/gcc-cross/arm-linux-gnueabihf/16/../../../../arm-linux-gnueabihf/lib -L/lib/arm-linux-gnueabihf -L/usr/lib -lstdc++ -lm -lgcc_s -latomic_asneeded -lc -lgcc_s /usr/lib/gcc-cross/arm-linux-gnueabihf/16/crtendS.o /usr/lib/gcc-cross/arm-linux-gnueabihf/16/../../../../arm-linux-gnueabihf/lib/crtn.o -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-z -Wl,relro -Wl,-z -Wl,now -pthread -fopenmp -Wl,-soname -Wl,libmaus2_stacktrace.so.2 -o .libs/libmaus2_stacktrace.so.2.0.813 libtool: install: /usr/bin/install -c .libs/libmaus2_stacktrace.so.2.0.813T /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/arm-linux-gnueabihf/libmaus2_stacktrace.so.2.0.813 libtool: install: (cd /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libmaus2_stacktrace.so.2.0.813 libmaus2_stacktrace.so.2 || { rm -f libmaus2_stacktrace.so.2 && ln -s libmaus2_stacktrace.so.2.0.813 libmaus2_stacktrace.so.2; }; }) libtool: install: (cd /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libmaus2_stacktrace.so.2.0.813 libmaus2_stacktrace.so || { rm -f libmaus2_stacktrace.so && ln -s libmaus2_stacktrace.so.2.0.813 libmaus2_stacktrace.so; }; }) libtool: install: /usr/bin/install -c .libs/libmaus2_stacktrace.lai /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/arm-linux-gnueabihf/libmaus2_stacktrace.la libtool: warning: relinking 'libmaus2_exception.la' libtool: install: (cd /build/reproducible-path/libmaus2-2.0.813+ds/src; /bin/bash "/build/reproducible-path/libmaus2-2.0.813+ds/libtool" --tag CXX --mode=relink arm-linux-gnueabihf-g++ -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -version-info 2:813:0 -L/lib -Wl,-z,relro -Wl,-z,now -o libmaus2_exception.la -rpath /usr/lib/arm-linux-gnueabihf libmaus2/exception/la-LibMausException.lo libmaus2_stacktrace.la libmaus2_demangle.la -lz -inst-prefix-dir /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp) libtool: relink: arm-linux-gnueabihf-g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc-cross/arm-linux-gnueabihf/16/../../../../arm-linux-gnueabihf/lib/crti.o /usr/lib/gcc-cross/arm-linux-gnueabihf/16/crtbeginS.o libmaus2/exception/.libs/la-LibMausException.o -L/lib -L/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -lmaus2_stacktrace -lmaus2_demangle -lz -L/usr/lib/gcc-cross/arm-linux-gnueabihf/16 -L/usr/lib/gcc-cross/arm-linux-gnueabihf/16/../../../../arm-linux-gnueabihf/lib -L/lib/arm-linux-gnueabihf -L/usr/lib -lstdc++ -lm -lgcc_s -latomic_asneeded -lc -lgcc_s /usr/lib/gcc-cross/arm-linux-gnueabihf/16/crtendS.o /usr/lib/gcc-cross/arm-linux-gnueabihf/16/../../../../arm-linux-gnueabihf/lib/crtn.o -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-z -Wl,relro -Wl,-z -Wl,now -pthread -fopenmp -Wl,-soname -Wl,libmaus2_exception.so.2 -o .libs/libmaus2_exception.so.2.0.813 libtool: install: /usr/bin/install -c .libs/libmaus2_exception.so.2.0.813T /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/arm-linux-gnueabihf/libmaus2_exception.so.2.0.813 libtool: install: (cd /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libmaus2_exception.so.2.0.813 libmaus2_exception.so.2 || { rm -f libmaus2_exception.so.2 && ln -s libmaus2_exception.so.2.0.813 libmaus2_exception.so.2; }; }) libtool: install: (cd /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libmaus2_exception.so.2.0.813 libmaus2_exception.so || { rm -f libmaus2_exception.so && ln -s libmaus2_exception.so.2.0.813 libmaus2_exception.so; }; }) libtool: install: /usr/bin/install -c .libs/libmaus2_exception.lai /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/arm-linux-gnueabihf/libmaus2_exception.la libtool: warning: relinking 'libmaus2_autoarray.la' libtool: install: (cd /build/reproducible-path/libmaus2-2.0.813+ds/src; /bin/bash "/build/reproducible-path/libmaus2-2.0.813+ds/libtool" --tag CXX --mode=relink arm-linux-gnueabihf-g++ -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -version-info 2:813:0 -L/lib -Wl,-z,relro -Wl,-z,now -o libmaus2_autoarray.la -rpath /usr/lib/arm-linux-gnueabihf libmaus2/autoarray/la-AutoArray.lo libmaus2_stacktrace.la libmaus2_demangle.la libmaus2_arch.la -lz -inst-prefix-dir /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp) libtool: relink: arm-linux-gnueabihf-g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc-cross/arm-linux-gnueabihf/16/../../../../arm-linux-gnueabihf/lib/crti.o /usr/lib/gcc-cross/arm-linux-gnueabihf/16/crtbeginS.o libmaus2/autoarray/.libs/la-AutoArray.o -L/lib -L/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -lmaus2_stacktrace -lmaus2_demangle -lmaus2_arch -lz -L/usr/lib/gcc-cross/arm-linux-gnueabihf/16 -L/usr/lib/gcc-cross/arm-linux-gnueabihf/16/../../../../arm-linux-gnueabihf/lib -L/lib/arm-linux-gnueabihf -L/usr/lib -lstdc++ -lm -lgcc_s -latomic_asneeded -lc -lgcc_s /usr/lib/gcc-cross/arm-linux-gnueabihf/16/crtendS.o /usr/lib/gcc-cross/arm-linux-gnueabihf/16/../../../../arm-linux-gnueabihf/lib/crtn.o -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-z -Wl,relro -Wl,-z -Wl,now -pthread -fopenmp -Wl,-soname -Wl,libmaus2_autoarray.so.2 -o .libs/libmaus2_autoarray.so.2.0.813 libtool: install: /usr/bin/install -c .libs/libmaus2_autoarray.so.2.0.813T /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/arm-linux-gnueabihf/libmaus2_autoarray.so.2.0.813 libtool: install: (cd /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libmaus2_autoarray.so.2.0.813 libmaus2_autoarray.so.2 || { rm -f libmaus2_autoarray.so.2 && ln -s libmaus2_autoarray.so.2.0.813 libmaus2_autoarray.so.2; }; }) libtool: install: (cd /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libmaus2_autoarray.so.2.0.813 libmaus2_autoarray.so || { rm -f libmaus2_autoarray.so && ln -s libmaus2_autoarray.so.2.0.813 libmaus2_autoarray.so; }; }) libtool: install: /usr/bin/install -c .libs/libmaus2_autoarray.lai /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/arm-linux-gnueabihf/libmaus2_autoarray.la libtool: warning: relinking 'libmaus2_parallel.la' libtool: install: (cd /build/reproducible-path/libmaus2-2.0.813+ds/src; /bin/bash "/build/reproducible-path/libmaus2-2.0.813+ds/libtool" --tag CXX --mode=relink arm-linux-gnueabihf-g++ -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -version-info 2:813:0 -L/lib -Wl,-z,relro -Wl,-z,now -o libmaus2_parallel.la -rpath /usr/lib/arm-linux-gnueabihf libmaus2/parallel/la-SimpleThreadWorkPackage.lo libmaus2/parallel/la-StdSemaphore.lo libmaus2/parallel/la-StdMutex.lo libmaus2/parallel/la-StdSpinLock.lo libmaus2/parallel/la-StaticInitialisation.lo libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_demangle.la libmaus2_arch.la -lz -inst-prefix-dir /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp) libtool: relink: arm-linux-gnueabihf-g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc-cross/arm-linux-gnueabihf/16/../../../../arm-linux-gnueabihf/lib/crti.o /usr/lib/gcc-cross/arm-linux-gnueabihf/16/crtbeginS.o libmaus2/parallel/.libs/la-SimpleThreadWorkPackage.o libmaus2/parallel/.libs/la-StdSemaphore.o libmaus2/parallel/.libs/la-StdMutex.o libmaus2/parallel/.libs/la-StdSpinLock.o libmaus2/parallel/.libs/la-StaticInitialisation.o -L/lib -L/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_demangle -lmaus2_arch -lz -L/usr/lib/gcc-cross/arm-linux-gnueabihf/16 -L/usr/lib/gcc-cross/arm-linux-gnueabihf/16/../../../../arm-linux-gnueabihf/lib -L/lib/arm-linux-gnueabihf -L/usr/lib -lstdc++ -lm -lgcc_s -latomic_asneeded -lc -lgcc_s /usr/lib/gcc-cross/arm-linux-gnueabihf/16/crtendS.o /usr/lib/gcc-cross/arm-linux-gnueabihf/16/../../../../arm-linux-gnueabihf/lib/crtn.o -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-z -Wl,relro -Wl,-z -Wl,now -pthread -fopenmp -Wl,-soname -Wl,libmaus2_parallel.so.2 -o .libs/libmaus2_parallel.so.2.0.813 libtool: install: /usr/bin/install -c .libs/libmaus2_parallel.so.2.0.813T /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/arm-linux-gnueabihf/libmaus2_parallel.so.2.0.813 libtool: install: (cd /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libmaus2_parallel.so.2.0.813 libmaus2_parallel.so.2 || { rm -f libmaus2_parallel.so.2 && ln -s libmaus2_parallel.so.2.0.813 libmaus2_parallel.so.2; }; }) libtool: install: (cd /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libmaus2_parallel.so.2.0.813 libmaus2_parallel.so || { rm -f libmaus2_parallel.so && ln -s libmaus2_parallel.so.2.0.813 libmaus2_parallel.so; }; }) libtool: install: /usr/bin/install -c .libs/libmaus2_parallel.lai /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/arm-linux-gnueabihf/libmaus2_parallel.la libtool: warning: relinking 'libmaus2.la' libtool: install: (cd /build/reproducible-path/libmaus2-2.0.813+ds/src; /bin/bash "/build/reproducible-path/libmaus2-2.0.813+ds/libtool" --tag CXX --mode=relink arm-linux-gnueabihf-g++ -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -version-info 2:813:0 -L/lib -Wl,-z,relro -Wl,-z,now -o libmaus2.la -rpath /usr/lib/arm-linux-gnueabihf libmaus2/la-StaticInitialization.lo libmaus2/bitio/la-CompactArray.lo libmaus2/rank/la-RankTable.lo libmaus2/rank/la-log2table.lo libmaus2/fastx/la-isFastQ.lo libmaus2/wavelet/la-toWaveletTreeBits.lo libmaus2/suffixsort/la-divsufsort.lo libmaus2/digest/la-md5.lo libmaus2/math/la-primes16.lo libmaus2/util/la-OutputFileNameTools.lo libmaus2/select/la-ESelectBase.lo libmaus2/bambam/la-CigarStringParser.lo libmaus2/fastx/la-Phred.lo libmaus2/lz/la-SnappyCompress.lo libmaus2/bambam/la-ReadEndsContainer.lo libmaus2/bambam/la-ReadEnds.lo libmaus2/huffman/la-IndexLoaderBase.lo libmaus2/bambam/la-BamAlignmentDecoderBase.lo libmaus2/bambam/la-StrCmpNum.lo libmaus2/huffman/la-KvInitResult.lo libmaus2/fm/la-MausFmToBwaConversion.lo libmaus2/util/la-TempFileNameGenerator.lo libmaus2/util/la-TempFileNameGeneratorState.lo libmaus2/util/la-ArgInfo.lo libmaus2/util/la-BitList.lo libmaus2/util/la-VarBitList.lo libmaus2/util/la-Concat.lo libmaus2/util/la-ConcatRequest.lo libmaus2/util/la-ConsoleColor.lo libmaus2/util/la-DynamicLoading.lo libmaus2/util/la-GetFileSize.lo libmaus2/util/la-Histogram.lo libmaus2/util/la-HistogramSet.lo libmaus2/util/la-IncreasingList.lo libmaus2/util/la-IntervalTree.lo libmaus2/util/la-GenericIntervalTree.lo libmaus2/util/la-LookupIntervalTree.lo libmaus2/digest/la-md5_interface.lo libmaus2/util/la-MemUsage.lo libmaus2/util/la-nstat.lo libmaus2/util/la-SaturatingCounter.lo libmaus2/util/la-StringSerialisation.lo libmaus2/util/la-SuccinctBorderArray.lo libmaus2/util/la-Terminal.lo libmaus2/util/la-OctetString.lo libmaus2/util/la-Utf8String.lo libmaus2/util/la-Utf8BlockIndexDecoder.lo libmaus2/util/la-Utf8BlockIndex.lo libmaus2/util/la-Utf8DecoderBuffer.lo libmaus2/util/la-Utf8DecoderWrapper.lo libmaus2/suffixtree/la-CompressedSuffixTree.lo libmaus2/bambam/la-AlignmentValidity.lo libmaus2/bambam/la-BamFlagBase.lo libmaus2/bambam/la-ReadGroup.lo libmaus2/bambam/la-DuplicationMetrics.lo libmaus2/bambam/la-BamDefaultAdapters.lo libmaus2/bambam/la-BamRange.lo libmaus2/bambam/la-BamIndexBinChunk.lo libmaus2/bambam/la-BamIndexLinearChunk.lo libmaus2/huffman/la-HuffmanTree.lo libmaus2/bambam/la-BamAlignmentDecoderInfo.lo libmaus2/lz/la-Lz4Base.lo libmaus2/lz/la-Lz4Compress.lo libmaus2/lz/la-Lz4DecoderBuffer.lo libmaus2/lz/la-lz4.lo libmaus2/fm/la-BidirectionalIndexInterval.lo libmaus2/fm/la-BidirectionalIndexIntervalSymbol.lo libmaus2/gamma/la-SparseGammaGapFileIndexDecoderEntry.lo libmaus2/fastx/la-FastALineParserLineInfo.lo libmaus2/fastx/la-FastAMatchTable.lo libmaus2/lcs/la-EditDistanceResult.lo libmaus2/fastx/la-FastABgzfIndexEntry.lo libmaus2/fastx/la-FastABgzfIndex.lo libmaus2/fastx/la-FastAIndexEntry.lo libmaus2/fastx/la-FastAIndex.lo libmaus2/hashing/la-Crc32.lo libmaus2/hashing/la-MurmurHash3.lo libmaus2/lcs/la-LocalBaseConstants.lo libmaus2/lcs/la-LocalEditDistanceResult.lo libmaus2/bambam/la-BamHeaderParserStateBase.lo libmaus2/bambam/la-GeneFlatFile.lo libmaus2/bambam/la-GeneFlatFileEntry.lo libmaus2/trie/la-SimpleTrie.lo libmaus2/bambam/la-BamStreamingMarkDuplicatesSupport.lo libmaus2/alignment/la-FactorMatchInfo.lo libmaus2/alignment/la-KmerInfo.lo libmaus2/bambam/la-SamInfoBase.lo libmaus2/digest/la-SHA1.lo libmaus2/digest/la-SHA2_224.lo libmaus2/digest/la-SHA2_256.lo libmaus2/digest/la-SHA2_384.lo libmaus2/digest/la-SHA2_512.lo libmaus2/digest/la-CRC32.lo libmaus2/digest/la-CRC32C_Core.lo libmaus2/digest/la-CRC32C.lo libmaus2/digest/la-CRC32_Core.lo libmaus2/bambam/parallel/la-ValidationFragment.lo libmaus2/bambam/parallel/la-GenericInputControlStreamInfo.lo libmaus2/fastx/la-NameInfoBase.lo libmaus2/bambam/parallel/la-RefIdInterval.lo libmaus2/fastx/la-RefPathToken.lo libmaus2/fastx/la-RefPathTokenVector.lo libmaus2/dazzler/db/la-FastaInfo.lo libmaus2/dazzler/db/la-IndexBase.lo libmaus2/dazzler/db/la-DatabaseFile.lo libmaus2/dazzler/db/la-Read.lo libmaus2/dazzler/align/la-Path.lo libmaus2/dazzler/align/la-Overlap.lo libmaus2/lcs/la-AlignmentStatistics.lo libmaus2/fastx/la-SingleWordDNABitBuffer.lo libmaus2/util/la-LongestIncreasingSubsequenceExtendedResult.lo libmaus2/lcs/la-AlignerFactory.lo libmaus2/lcs/la-BandedAlignerFactory.lo libmaus2/aio/la-InputStreamInstance.lo libmaus2/aio/la-OutputStreamInstance.lo libmaus2/aio/la-OutputStreamFactoryContainer.lo libmaus2/dazzler/align/la-TraceBlock.lo libmaus2/dazzler/align/la-ApproximateRun.lo libmaus2/suffixsort/la-BwtMergeBlockSortRequest.lo libmaus2/dazzler/align/la-OverlapMeta.lo libmaus2/dazzler/align/la-Tandem.lo libmaus2/dazzler/align/la-TandemVector.lo libmaus2/math/la-GmpInteger.lo libmaus2/math/la-GmpFloat.lo libmaus2/dazzler/align/la-TracePoint.lo libmaus2/lz/la-XzDecoder.lo libmaus2/util/la-ArgParser.lo libmaus2/fastx/la-DNAIndexMetaDataSequence.lo libmaus2/fastx/la-DNAIndexMetaData.lo libmaus2/bambam/la-PileVectorElement.lo libmaus2/bambam/la-PileQualityVectorElement.lo libmaus2/digest/la-SHA3_256.lo libmaus2/fastx/la-DNAIndexMetaDataBigBand.lo libmaus2/fastx/la-DNAIndexMetaDataBigBandBiDir.lo libmaus2/rank/la-DNARankBiDirRange.lo libmaus2/lcs/la-NNPTraceElement.lo libmaus2/lcs/la-NNPTraceContainer.lo libmaus2/lcs/la-NNPAlignResult.lo libmaus2/suffixsort/bwtb3m/la-MergeStrategyMergeGapRequest.lo libmaus2/suffixsort/bwtb3m/la-BwtMergeSort.lo libmaus2/suffixsort/bwtb3m/la-BwtComputeSSA.lo libmaus2/fastx/la-FastAToCompact4BigBand.lo libmaus2/suffixsort/bwtb3m/la-BwtMergeSortResult.lo libmaus2/lz/la-ZlibInterface.lo libmaus2/suffixsort/bwtb3m/la-BwtSelectSSA.lo libmaus2/aio/la-FileRemoval.lo libmaus2/rank/la-DNARankMEM.lo libmaus2/lcs/la-ChainAddQueueElement.lo libmaus2/lcs/la-Chain.lo libmaus2/lcs/la-ChainNode.lo libmaus2/lcs/la-ChainNodeInfo.lo libmaus2/lcs/la-ChainRemoveQueueElement.lo libmaus2/lcs/la-ChainSplayTreeNode.lo libmaus2/timing/la-RealTimeClock.lo libmaus2/aio/la-PosixFdOutputStreamFactory.lo libmaus2/dazzler/align/la-OverlapHeader.lo libmaus2/bambam/la-BamAlignment.lo libmaus2/suffixsort/bwtb3m/la-MergeStrategyMergeInput.lo libmaus2/aio/la-InputOutputStreamInstance.lo libmaus2/dazzler/align/la-OverlapInfo.lo libmaus2/dazzler/align/la-OverlapDataInterface.lo libmaus2/util/la-PathTools.lo libmaus2/aio/la-OFStreamOutputStreamFactory.lo libmaus2/aio/la-PosixFdInput.lo libmaus2/lz/la-BgzfDeflateHeaderFunctions.lo libmaus2/lz/la-BgzfDeflateZStreamBase.lo libmaus2/gtf/la-CDS.lo libmaus2/gtf/la-Exon.lo libmaus2/gtf/la-ExonInfo.lo libmaus2/gtf/la-ExonInterval.lo libmaus2/gtf/la-ExonSubInfo.lo libmaus2/protein/la-Blosum62.lo libmaus2/protein/la-CodonMapper.lo libmaus2/bambam/la-ChecksumsFactory.lo libmaus2/vcf/la-VCFSortEntry.lo libmaus2/network/la-CurlInitObject.lo libmaus2/network/la-CurlOutputBlock.lo libmaus2/network/la-CurlResponseAcceptor.lo libmaus2/network/la-HttpCurlResponseAcceptor.lo libmaus2/network/la-FtpCurlResponseAcceptor.lo libmaus2/network/la-CurlObject.lo libmaus2/network/la-CurlObjectReader.lo libmaus2/network/la-CurlObjectThreadCallable.lo libmaus2/network/la-CurlInputStreamBuffer.lo libmaus2/network/la-CurlInputStream.lo libmaus2/network/la-GetHostName.lo libmaus2/aio/la-SecrecyInputStreamFactory.lo libmaus2/aio/la-SecrecyOutputStreamFactory.lo libmaus2/bambam/la-Scram.lo libmaus2/bambam/parallel/la-ScramCramEncoding.lo libmaus2/parallel/threadpool/bgzf/la-BgzfDecompressContext.lo libmaus2/parallel/threadpool/bgzf/la-BgzfCompressContext.lo libmaus2/suffixsort/bwtb3m/la-BwtMergeIsaBase.lo libmaus2/suffixsort/bwtb3m/la-BwtMergeIsaParallelBase.lo libmaus2/suffixsort/bwtb3m/la-BwtMergeParallelGapFragMerge.lo libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplateByte32.lo libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplateLz432.lo libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplatePacTerm32.lo libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplateCompact32.lo libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplatePac32.lo libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplateUtf832.lo libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplateByte64.lo libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplateLz464.lo libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplatePacTerm64.lo libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplateCompact64.lo libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplatePac64.lo libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplateUtf864.lo libmaus2/suffixsort/bwtb3m/la-BwtMergeComputeSampledSA.lo -lz -lgmp -lnettle -lgpgme libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la -lz -inst-prefix-dir /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp) libtool: relink: arm-linux-gnueabihf-g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc-cross/arm-linux-gnueabihf/16/../../../../arm-linux-gnueabihf/lib/crti.o /usr/lib/gcc-cross/arm-linux-gnueabihf/16/crtbeginS.o libmaus2/.libs/la-StaticInitialization.o libmaus2/bitio/.libs/la-CompactArray.o libmaus2/rank/.libs/la-RankTable.o libmaus2/rank/.libs/la-log2table.o libmaus2/fastx/.libs/la-isFastQ.o libmaus2/wavelet/.libs/la-toWaveletTreeBits.o libmaus2/suffixsort/.libs/la-divsufsort.o libmaus2/digest/.libs/la-md5.o libmaus2/math/.libs/la-primes16.o libmaus2/util/.libs/la-OutputFileNameTools.o libmaus2/select/.libs/la-ESelectBase.o libmaus2/bambam/.libs/la-CigarStringParser.o libmaus2/fastx/.libs/la-Phred.o libmaus2/lz/.libs/la-SnappyCompress.o libmaus2/bambam/.libs/la-ReadEndsContainer.o libmaus2/bambam/.libs/la-ReadEnds.o libmaus2/huffman/.libs/la-IndexLoaderBase.o libmaus2/bambam/.libs/la-BamAlignmentDecoderBase.o libmaus2/bambam/.libs/la-StrCmpNum.o libmaus2/huffman/.libs/la-KvInitResult.o libmaus2/fm/.libs/la-MausFmToBwaConversion.o libmaus2/util/.libs/la-TempFileNameGenerator.o libmaus2/util/.libs/la-TempFileNameGeneratorState.o libmaus2/util/.libs/la-ArgInfo.o libmaus2/util/.libs/la-BitList.o libmaus2/util/.libs/la-VarBitList.o libmaus2/util/.libs/la-Concat.o libmaus2/util/.libs/la-ConcatRequest.o libmaus2/util/.libs/la-ConsoleColor.o libmaus2/util/.libs/la-DynamicLoading.o libmaus2/util/.libs/la-GetFileSize.o libmaus2/util/.libs/la-Histogram.o libmaus2/util/.libs/la-HistogramSet.o libmaus2/util/.libs/la-IncreasingList.o libmaus2/util/.libs/la-IntervalTree.o libmaus2/util/.libs/la-GenericIntervalTree.o libmaus2/util/.libs/la-LookupIntervalTree.o libmaus2/digest/.libs/la-md5_interface.o libmaus2/util/.libs/la-MemUsage.o libmaus2/util/.libs/la-nstat.o libmaus2/util/.libs/la-SaturatingCounter.o libmaus2/util/.libs/la-StringSerialisation.o libmaus2/util/.libs/la-SuccinctBorderArray.o libmaus2/util/.libs/la-Terminal.o libmaus2/util/.libs/la-OctetString.o libmaus2/util/.libs/la-Utf8String.o libmaus2/util/.libs/la-Utf8BlockIndexDecoder.o libmaus2/util/.libs/la-Utf8BlockIndex.o libmaus2/util/.libs/la-Utf8DecoderBuffer.o libmaus2/util/.libs/la-Utf8DecoderWrapper.o libmaus2/suffixtree/.libs/la-CompressedSuffixTree.o libmaus2/bambam/.libs/la-AlignmentValidity.o libmaus2/bambam/.libs/la-BamFlagBase.o libmaus2/bambam/.libs/la-ReadGroup.o libmaus2/bambam/.libs/la-DuplicationMetrics.o libmaus2/bambam/.libs/la-BamDefaultAdapters.o libmaus2/bambam/.libs/la-BamRange.o libmaus2/bambam/.libs/la-BamIndexBinChunk.o libmaus2/bambam/.libs/la-BamIndexLinearChunk.o libmaus2/huffman/.libs/la-HuffmanTree.o libmaus2/bambam/.libs/la-BamAlignmentDecoderInfo.o libmaus2/lz/.libs/la-Lz4Base.o libmaus2/lz/.libs/la-Lz4Compress.o libmaus2/lz/.libs/la-Lz4DecoderBuffer.o libmaus2/lz/.libs/la-lz4.o libmaus2/fm/.libs/la-BidirectionalIndexInterval.o libmaus2/fm/.libs/la-BidirectionalIndexIntervalSymbol.o libmaus2/gamma/.libs/la-SparseGammaGapFileIndexDecoderEntry.o libmaus2/fastx/.libs/la-FastALineParserLineInfo.o libmaus2/fastx/.libs/la-FastAMatchTable.o libmaus2/lcs/.libs/la-EditDistanceResult.o libmaus2/fastx/.libs/la-FastABgzfIndexEntry.o libmaus2/fastx/.libs/la-FastABgzfIndex.o libmaus2/fastx/.libs/la-FastAIndexEntry.o libmaus2/fastx/.libs/la-FastAIndex.o libmaus2/hashing/.libs/la-Crc32.o libmaus2/hashing/.libs/la-MurmurHash3.o libmaus2/lcs/.libs/la-LocalBaseConstants.o libmaus2/lcs/.libs/la-LocalEditDistanceResult.o libmaus2/bambam/.libs/la-BamHeaderParserStateBase.o libmaus2/bambam/.libs/la-GeneFlatFile.o libmaus2/bambam/.libs/la-GeneFlatFileEntry.o libmaus2/trie/.libs/la-SimpleTrie.o libmaus2/bambam/.libs/la-BamStreamingMarkDuplicatesSupport.o libmaus2/alignment/.libs/la-FactorMatchInfo.o libmaus2/alignment/.libs/la-KmerInfo.o libmaus2/bambam/.libs/la-SamInfoBase.o libmaus2/digest/.libs/la-SHA1.o libmaus2/digest/.libs/la-SHA2_224.o libmaus2/digest/.libs/la-SHA2_256.o libmaus2/digest/.libs/la-SHA2_384.o libmaus2/digest/.libs/la-SHA2_512.o libmaus2/digest/.libs/la-CRC32.o libmaus2/digest/.libs/la-CRC32C_Core.o libmaus2/digest/.libs/la-CRC32C.o libmaus2/digest/.libs/la-CRC32_Core.o libmaus2/bambam/parallel/.libs/la-ValidationFragment.o libmaus2/bambam/parallel/.libs/la-GenericInputControlStreamInfo.o libmaus2/fastx/.libs/la-NameInfoBase.o libmaus2/bambam/parallel/.libs/la-RefIdInterval.o libmaus2/fastx/.libs/la-RefPathToken.o libmaus2/fastx/.libs/la-RefPathTokenVector.o libmaus2/dazzler/db/.libs/la-FastaInfo.o libmaus2/dazzler/db/.libs/la-IndexBase.o libmaus2/dazzler/db/.libs/la-DatabaseFile.o libmaus2/dazzler/db/.libs/la-Read.o libmaus2/dazzler/align/.libs/la-Path.o libmaus2/dazzler/align/.libs/la-Overlap.o libmaus2/lcs/.libs/la-AlignmentStatistics.o libmaus2/fastx/.libs/la-SingleWordDNABitBuffer.o libmaus2/util/.libs/la-LongestIncreasingSubsequenceExtendedResult.o libmaus2/lcs/.libs/la-AlignerFactory.o libmaus2/lcs/.libs/la-BandedAlignerFactory.o libmaus2/aio/.libs/la-InputStreamInstance.o libmaus2/aio/.libs/la-OutputStreamInstance.o libmaus2/aio/.libs/la-OutputStreamFactoryContainer.o libmaus2/dazzler/align/.libs/la-TraceBlock.o libmaus2/dazzler/align/.libs/la-ApproximateRun.o libmaus2/suffixsort/.libs/la-BwtMergeBlockSortRequest.o libmaus2/dazzler/align/.libs/la-OverlapMeta.o libmaus2/dazzler/align/.libs/la-Tandem.o libmaus2/dazzler/align/.libs/la-TandemVector.o libmaus2/math/.libs/la-GmpInteger.o libmaus2/math/.libs/la-GmpFloat.o libmaus2/dazzler/align/.libs/la-TracePoint.o libmaus2/lz/.libs/la-XzDecoder.o libmaus2/util/.libs/la-ArgParser.o libmaus2/fastx/.libs/la-DNAIndexMetaDataSequence.o libmaus2/fastx/.libs/la-DNAIndexMetaData.o libmaus2/bambam/.libs/la-PileVectorElement.o libmaus2/bambam/.libs/la-PileQualityVectorElement.o libmaus2/digest/.libs/la-SHA3_256.o libmaus2/fastx/.libs/la-DNAIndexMetaDataBigBand.o libmaus2/fastx/.libs/la-DNAIndexMetaDataBigBandBiDir.o libmaus2/rank/.libs/la-DNARankBiDirRange.o libmaus2/lcs/.libs/la-NNPTraceElement.o libmaus2/lcs/.libs/la-NNPTraceContainer.o libmaus2/lcs/.libs/la-NNPAlignResult.o libmaus2/suffixsort/bwtb3m/.libs/la-MergeStrategyMergeGapRequest.o libmaus2/suffixsort/bwtb3m/.libs/la-BwtMergeSort.o libmaus2/suffixsort/bwtb3m/.libs/la-BwtComputeSSA.o libmaus2/fastx/.libs/la-FastAToCompact4BigBand.o libmaus2/suffixsort/bwtb3m/.libs/la-BwtMergeSortResult.o libmaus2/lz/.libs/la-ZlibInterface.o libmaus2/suffixsort/bwtb3m/.libs/la-BwtSelectSSA.o libmaus2/aio/.libs/la-FileRemoval.o libmaus2/rank/.libs/la-DNARankMEM.o libmaus2/lcs/.libs/la-ChainAddQueueElement.o libmaus2/lcs/.libs/la-Chain.o libmaus2/lcs/.libs/la-ChainNode.o libmaus2/lcs/.libs/la-ChainNodeInfo.o libmaus2/lcs/.libs/la-ChainRemoveQueueElement.o libmaus2/lcs/.libs/la-ChainSplayTreeNode.o libmaus2/timing/.libs/la-RealTimeClock.o libmaus2/aio/.libs/la-PosixFdOutputStreamFactory.o libmaus2/dazzler/align/.libs/la-OverlapHeader.o libmaus2/bambam/.libs/la-BamAlignment.o libmaus2/suffixsort/bwtb3m/.libs/la-MergeStrategyMergeInput.o libmaus2/aio/.libs/la-InputOutputStreamInstance.o libmaus2/dazzler/align/.libs/la-OverlapInfo.o libmaus2/dazzler/align/.libs/la-OverlapDataInterface.o libmaus2/util/.libs/la-PathTools.o libmaus2/aio/.libs/la-OFStreamOutputStreamFactory.o libmaus2/aio/.libs/la-PosixFdInput.o libmaus2/lz/.libs/la-BgzfDeflateHeaderFunctions.o libmaus2/lz/.libs/la-BgzfDeflateZStreamBase.o libmaus2/gtf/.libs/la-CDS.o libmaus2/gtf/.libs/la-Exon.o libmaus2/gtf/.libs/la-ExonInfo.o libmaus2/gtf/.libs/la-ExonInterval.o libmaus2/gtf/.libs/la-ExonSubInfo.o libmaus2/protein/.libs/la-Blosum62.o libmaus2/protein/.libs/la-CodonMapper.o libmaus2/bambam/.libs/la-ChecksumsFactory.o libmaus2/vcf/.libs/la-VCFSortEntry.o libmaus2/network/.libs/la-CurlInitObject.o libmaus2/network/.libs/la-CurlOutputBlock.o libmaus2/network/.libs/la-CurlResponseAcceptor.o libmaus2/network/.libs/la-HttpCurlResponseAcceptor.o libmaus2/network/.libs/la-FtpCurlResponseAcceptor.o libmaus2/network/.libs/la-CurlObject.o libmaus2/network/.libs/la-CurlObjectReader.o libmaus2/network/.libs/la-CurlObjectThreadCallable.o libmaus2/network/.libs/la-CurlInputStreamBuffer.o libmaus2/network/.libs/la-CurlInputStream.o libmaus2/network/.libs/la-GetHostName.o libmaus2/aio/.libs/la-SecrecyInputStreamFactory.o libmaus2/aio/.libs/la-SecrecyOutputStreamFactory.o libmaus2/bambam/.libs/la-Scram.o libmaus2/bambam/parallel/.libs/la-ScramCramEncoding.o libmaus2/parallel/threadpool/bgzf/.libs/la-BgzfDecompressContext.o libmaus2/parallel/threadpool/bgzf/.libs/la-BgzfCompressContext.o libmaus2/suffixsort/bwtb3m/.libs/la-BwtMergeIsaBase.o libmaus2/suffixsort/bwtb3m/.libs/la-BwtMergeIsaParallelBase.o libmaus2/suffixsort/bwtb3m/.libs/la-BwtMergeParallelGapFragMerge.o libmaus2/suffixsort/bwtb3m/.libs/la-BwtMergeSortTemplateByte32.o libmaus2/suffixsort/bwtb3m/.libs/la-BwtMergeSortTemplateLz432.o libmaus2/suffixsort/bwtb3m/.libs/la-BwtMergeSortTemplatePacTerm32.o libmaus2/suffixsort/bwtb3m/.libs/la-BwtMergeSortTemplateCompact32.o libmaus2/suffixsort/bwtb3m/.libs/la-BwtMergeSortTemplatePac32.o libmaus2/suffixsort/bwtb3m/.libs/la-BwtMergeSortTemplateUtf832.o libmaus2/suffixsort/bwtb3m/.libs/la-BwtMergeSortTemplateByte64.o libmaus2/suffixsort/bwtb3m/.libs/la-BwtMergeSortTemplateLz464.o libmaus2/suffixsort/bwtb3m/.libs/la-BwtMergeSortTemplatePacTerm64.o libmaus2/suffixsort/bwtb3m/.libs/la-BwtMergeSortTemplateCompact64.o libmaus2/suffixsort/bwtb3m/.libs/la-BwtMergeSortTemplatePac64.o libmaus2/suffixsort/bwtb3m/.libs/la-BwtMergeSortTemplateUtf864.o libmaus2/suffixsort/bwtb3m/.libs/la-BwtMergeComputeSampledSA.o -L/lib -lgmp -lnettle -lgpgme -L/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_demangle -lmaus2_arch -lz -L/usr/lib/gcc-cross/arm-linux-gnueabihf/16 -L/usr/lib/gcc-cross/arm-linux-gnueabihf/16/../../../../arm-linux-gnueabihf/lib -L/lib/arm-linux-gnueabihf -L/usr/lib -lstdc++ -lm -lgcc_s -latomic_asneeded -lc -lgcc_s /usr/lib/gcc-cross/arm-linux-gnueabihf/16/crtendS.o /usr/lib/gcc-cross/arm-linux-gnueabihf/16/../../../../arm-linux-gnueabihf/lib/crtn.o -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-z -Wl,relro -Wl,-z -Wl,now -pthread -fopenmp -Wl,-soname -Wl,libmaus2.so.2 -o .libs/libmaus2.so.2.0.813 libtool: install: /usr/bin/install -c .libs/libmaus2.so.2.0.813T /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/arm-linux-gnueabihf/libmaus2.so.2.0.813 libtool: install: (cd /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libmaus2.so.2.0.813 libmaus2.so.2 || { rm -f libmaus2.so.2 && ln -s libmaus2.so.2.0.813 libmaus2.so.2; }; }) libtool: install: (cd /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libmaus2.so.2.0.813 libmaus2.so || { rm -f libmaus2.so && ln -s libmaus2.so.2.0.813 libmaus2.so; }; }) libtool: install: /usr/bin/install -c .libs/libmaus2.lai /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/arm-linux-gnueabihf/libmaus2.la libtool: warning: relinking 'libmaus2_simd_align_128.la' libtool: install: (cd /build/reproducible-path/libmaus2-2.0.813+ds/src; /bin/bash "/build/reproducible-path/libmaus2-2.0.813+ds/libtool" --tag CXX --mode=relink arm-linux-gnueabihf-g++ -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -version-info 2:813:0 -Wl,-z,relro -Wl,-z,now -o libmaus2_simd_align_128.la -rpath /usr/lib/arm-linux-gnueabihf libmaus2/lcs/simd_align_128_la-SimdX86GlobalAlignmentConstants128.lo libmaus2/lcs/simd_align_128_la-SimdX86BandedGlobalAlignmentX128_8.lo libmaus2/lcs/simd_align_128_la-SimdX86BandedGlobalAlignmentX128_16.lo libmaus2/lcs/simd_align_128_la-SimdX86GlobalAlignmentX128_8.lo libmaus2/lcs/simd_align_128_la-SimdX86GlobalAlignmentX128_16.lo libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la -lz -inst-prefix-dir /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp) libtool: relink: arm-linux-gnueabihf-g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc-cross/arm-linux-gnueabihf/16/../../../../arm-linux-gnueabihf/lib/crti.o /usr/lib/gcc-cross/arm-linux-gnueabihf/16/crtbeginS.o libmaus2/lcs/.libs/simd_align_128_la-SimdX86GlobalAlignmentConstants128.o libmaus2/lcs/.libs/simd_align_128_la-SimdX86BandedGlobalAlignmentX128_8.o libmaus2/lcs/.libs/simd_align_128_la-SimdX86BandedGlobalAlignmentX128_16.o libmaus2/lcs/.libs/simd_align_128_la-SimdX86GlobalAlignmentX128_8.o libmaus2/lcs/.libs/simd_align_128_la-SimdX86GlobalAlignmentX128_16.o -L/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_demangle -lmaus2_arch -lz -L/usr/lib/gcc-cross/arm-linux-gnueabihf/16 -L/usr/lib/gcc-cross/arm-linux-gnueabihf/16/../../../../arm-linux-gnueabihf/lib -L/lib/arm-linux-gnueabihf -L/lib -L/usr/lib -lstdc++ -lm -lgcc_s -latomic_asneeded -lc -lgcc_s /usr/lib/gcc-cross/arm-linux-gnueabihf/16/crtendS.o /usr/lib/gcc-cross/arm-linux-gnueabihf/16/../../../../arm-linux-gnueabihf/lib/crtn.o -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-z -Wl,relro -Wl,-z -Wl,now -pthread -fopenmp -Wl,-soname -Wl,libmaus2_simd_align_128.so.2 -o .libs/libmaus2_simd_align_128.so.2.0.813 libtool: install: /usr/bin/install -c .libs/libmaus2_simd_align_128.so.2.0.813T /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/arm-linux-gnueabihf/libmaus2_simd_align_128.so.2.0.813 libtool: install: (cd /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libmaus2_simd_align_128.so.2.0.813 libmaus2_simd_align_128.so.2 || { rm -f libmaus2_simd_align_128.so.2 && ln -s libmaus2_simd_align_128.so.2.0.813 libmaus2_simd_align_128.so.2; }; }) libtool: install: (cd /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libmaus2_simd_align_128.so.2.0.813 libmaus2_simd_align_128.so || { rm -f libmaus2_simd_align_128.so && ln -s libmaus2_simd_align_128.so.2.0.813 libmaus2_simd_align_128.so; }; }) libtool: install: /usr/bin/install -c .libs/libmaus2_simd_align_128.lai /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/arm-linux-gnueabihf/libmaus2_simd_align_128.la libtool: warning: relinking 'libmaus2_simd_align_256.la' libtool: install: (cd /build/reproducible-path/libmaus2-2.0.813+ds/src; /bin/bash "/build/reproducible-path/libmaus2-2.0.813+ds/libtool" --tag CXX --mode=relink arm-linux-gnueabihf-g++ -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -version-info 2:813:0 -Wl,-z,relro -Wl,-z,now -o libmaus2_simd_align_256.la -rpath /usr/lib/arm-linux-gnueabihf libmaus2/lcs/simd_align_256_la-SimdX86GlobalAlignmentConstants256.lo libmaus2/lcs/simd_align_256_la-SimdX86BandedGlobalAlignmentY256_8.lo libmaus2/lcs/simd_align_256_la-SimdX86BandedGlobalAlignmentY256_16.lo libmaus2/lcs/simd_align_256_la-SimdX86BandedGlobalAlignmentScoreY256_16.lo libmaus2/lcs/simd_align_256_la-SimdX86GlobalAlignmentY256_8.lo libmaus2/lcs/simd_align_256_la-SimdX86GlobalAlignmentY256_16.lo libmaus2/lcs/simd_align_256_la-AlignmentOneAgainstManyAVX2.lo libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la -lz -inst-prefix-dir /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp) libtool: relink: arm-linux-gnueabihf-g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc-cross/arm-linux-gnueabihf/16/../../../../arm-linux-gnueabihf/lib/crti.o /usr/lib/gcc-cross/arm-linux-gnueabihf/16/crtbeginS.o libmaus2/lcs/.libs/simd_align_256_la-SimdX86GlobalAlignmentConstants256.o libmaus2/lcs/.libs/simd_align_256_la-SimdX86BandedGlobalAlignmentY256_8.o libmaus2/lcs/.libs/simd_align_256_la-SimdX86BandedGlobalAlignmentY256_16.o libmaus2/lcs/.libs/simd_align_256_la-SimdX86BandedGlobalAlignmentScoreY256_16.o libmaus2/lcs/.libs/simd_align_256_la-SimdX86GlobalAlignmentY256_8.o libmaus2/lcs/.libs/simd_align_256_la-SimdX86GlobalAlignmentY256_16.o libmaus2/lcs/.libs/simd_align_256_la-AlignmentOneAgainstManyAVX2.o -L/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_demangle -lmaus2_arch -lz -L/usr/lib/gcc-cross/arm-linux-gnueabihf/16 -L/usr/lib/gcc-cross/arm-linux-gnueabihf/16/../../../../arm-linux-gnueabihf/lib -L/lib/arm-linux-gnueabihf -L/lib -L/usr/lib -lstdc++ -lm -lgcc_s -latomic_asneeded -lc -lgcc_s /usr/lib/gcc-cross/arm-linux-gnueabihf/16/crtendS.o /usr/lib/gcc-cross/arm-linux-gnueabihf/16/../../../../arm-linux-gnueabihf/lib/crtn.o -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-z -Wl,relro -Wl,-z -Wl,now -pthread -fopenmp -Wl,-soname -Wl,libmaus2_simd_align_256.so.2 -o .libs/libmaus2_simd_align_256.so.2.0.813 libtool: install: /usr/bin/install -c .libs/libmaus2_simd_align_256.so.2.0.813T /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/arm-linux-gnueabihf/libmaus2_simd_align_256.so.2.0.813 libtool: install: (cd /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libmaus2_simd_align_256.so.2.0.813 libmaus2_simd_align_256.so.2 || { rm -f libmaus2_simd_align_256.so.2 && ln -s libmaus2_simd_align_256.so.2.0.813 libmaus2_simd_align_256.so.2; }; }) libtool: install: (cd /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libmaus2_simd_align_256.so.2.0.813 libmaus2_simd_align_256.so || { rm -f libmaus2_simd_align_256.so && ln -s libmaus2_simd_align_256.so.2.0.813 libmaus2_simd_align_256.so; }; }) libtool: install: /usr/bin/install -c .libs/libmaus2_simd_align_256.lai /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/arm-linux-gnueabihf/libmaus2_simd_align_256.la libtool: install: /usr/bin/install -c .libs/libmaus2_arch.a /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/arm-linux-gnueabihf/libmaus2_arch.a libtool: install: chmod 644 /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/arm-linux-gnueabihf/libmaus2_arch.a libtool: install: arm-linux-gnueabihf-ranlib /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/arm-linux-gnueabihf/libmaus2_arch.a libtool: install: /usr/bin/install -c .libs/libmaus2_posix.a /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/arm-linux-gnueabihf/libmaus2_posix.a libtool: install: chmod 644 /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/arm-linux-gnueabihf/libmaus2_posix.a libtool: install: arm-linux-gnueabihf-ranlib /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/arm-linux-gnueabihf/libmaus2_posix.a libtool: install: /usr/bin/install -c .libs/libmaus2_demangle.a /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/arm-linux-gnueabihf/libmaus2_demangle.a libtool: install: chmod 644 /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/arm-linux-gnueabihf/libmaus2_demangle.a libtool: install: arm-linux-gnueabihf-ranlib /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/arm-linux-gnueabihf/libmaus2_demangle.a libtool: install: /usr/bin/install -c .libs/libmaus2_stacktrace.a /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/arm-linux-gnueabihf/libmaus2_stacktrace.a libtool: install: chmod 644 /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/arm-linux-gnueabihf/libmaus2_stacktrace.a libtool: install: arm-linux-gnueabihf-ranlib /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/arm-linux-gnueabihf/libmaus2_stacktrace.a libtool: install: /usr/bin/install -c .libs/libmaus2_exception.a /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/arm-linux-gnueabihf/libmaus2_exception.a libtool: install: chmod 644 /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/arm-linux-gnueabihf/libmaus2_exception.a libtool: install: arm-linux-gnueabihf-ranlib /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/arm-linux-gnueabihf/libmaus2_exception.a libtool: install: /usr/bin/install -c .libs/libmaus2_autoarray.a /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/arm-linux-gnueabihf/libmaus2_autoarray.a libtool: install: chmod 644 /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/arm-linux-gnueabihf/libmaus2_autoarray.a libtool: install: arm-linux-gnueabihf-ranlib /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/arm-linux-gnueabihf/libmaus2_autoarray.a libtool: install: /usr/bin/install -c .libs/libmaus2_parallel.a /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/arm-linux-gnueabihf/libmaus2_parallel.a libtool: install: chmod 644 /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/arm-linux-gnueabihf/libmaus2_parallel.a libtool: install: arm-linux-gnueabihf-ranlib /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/arm-linux-gnueabihf/libmaus2_parallel.a libtool: install: /usr/bin/install -c .libs/libmaus2.a /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/arm-linux-gnueabihf/libmaus2.a libtool: install: chmod 644 /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/arm-linux-gnueabihf/libmaus2.a libtool: install: arm-linux-gnueabihf-ranlib /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/arm-linux-gnueabihf/libmaus2.a libtool: install: /usr/bin/install -c .libs/libmaus2_simd_align_128.a /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/arm-linux-gnueabihf/libmaus2_simd_align_128.a libtool: install: chmod 644 /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/arm-linux-gnueabihf/libmaus2_simd_align_128.a libtool: install: arm-linux-gnueabihf-ranlib /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/arm-linux-gnueabihf/libmaus2_simd_align_128.a libtool: install: /usr/bin/install -c .libs/libmaus2_simd_align_256.a /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/arm-linux-gnueabihf/libmaus2_simd_align_256.a libtool: install: chmod 644 /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/arm-linux-gnueabihf/libmaus2_simd_align_256.a libtool: install: arm-linux-gnueabihf-ranlib /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/arm-linux-gnueabihf/libmaus2_simd_align_256.a libtool: warning: remember to run 'libtool --finish /usr/lib/arm-linux-gnueabihf' /usr/bin/mkdir -p '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/' /usr/bin/install -c -m 644 libmaus2/LibMausConfig.hpp libmaus2/LibMausWindows.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/' /usr/bin/mkdir -p '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/aio' /usr/bin/install -c -m 644 libmaus2/aio/BufferedOutput.hpp libmaus2/aio/FileFragment.hpp libmaus2/aio/SynchronousFastReaderBase.hpp libmaus2/aio/SynchronousGenericInput.hpp libmaus2/aio/ReorderConcatGenericInput.hpp libmaus2/aio/GetLength.hpp libmaus2/aio/CompactDecoder4.hpp libmaus2/aio/CompactEncoder4.hpp libmaus2/aio/WriteCompactArray.hpp libmaus2/aio/SynchronousGenericOutput.hpp libmaus2/aio/PutOutputIterator.hpp libmaus2/aio/CircularBuffer.hpp libmaus2/aio/CircularWrapper.hpp libmaus2/aio/IStreamWrapper.hpp libmaus2/aio/Buffer.hpp libmaus2/aio/SingleFileFragmentMerge.hpp libmaus2/aio/PosixFdInput.hpp libmaus2/aio/PosixFdInputWrapper.hpp libmaus2/aio/PosixFdInputStream.hpp libmaus2/aio/PosixFdOutputStreamBuffer.hpp libmaus2/aio/PosixFdOutputStream.hpp libmaus2/aio/PosixFdInputStreamBuffer.hpp libmaus2/aio/LineSplittingPosixFdOutputStreamBuffer.hpp libmaus2/aio/LineSplittingPosixFdOutputStream.hpp libmaus2/aio/NamedTemporaryFile.hpp libmaus2/aio/NamedTemporaryFileTypeInfo.hpp libmaus2/aio/NamedTemporaryFileAllocator.hpp libmaus2/aio/InputStreamWrapper.hpp libmaus2/aio/InputStream.hpp libmaus2/aio/InputStreamFactory.hpp libmaus2/aio/PosixFdInputStreamFactory.hpp libmaus2/aio/InputStreamFactoryContainer.hpp libmaus2/aio/OutputStreamWrapper.hpp libmaus2/aio/OutputStream.hpp libmaus2/aio/OutputStreamFactory.hpp libmaus2/aio/OutputStreamFactoryContainer.hpp libmaus2/aio/PosixFdOutputStreamFactory.hpp libmaus2/aio/InputOutputStreamFactoryContainer.hpp libmaus2/aio/InputOutputStreamFactory.hpp libmaus2/aio/InputOutputStream.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/aio' /usr/bin/install -c -m 644 libmaus2/aio/FStreamInputOutputStreamFactory.hpp libmaus2/aio/IFStreamInputStreamFactory.hpp libmaus2/aio/OFStreamOutputStreamFactory.hpp libmaus2/aio/InputOutputStreamWrapper.hpp libmaus2/aio/PosixFdInputOutputStreamBuffer.hpp libmaus2/aio/PosixFdInputOutputStream.hpp libmaus2/aio/PosixFdInputOutputStreamFactory.hpp libmaus2/aio/MemoryFileAdapter.hpp libmaus2/aio/MemoryFileContainer.hpp libmaus2/aio/MemoryFile.hpp libmaus2/aio/MemoryInputOutputStreamBuffer.hpp libmaus2/aio/MemoryInputOutputStreamFactory.hpp libmaus2/aio/MemoryInputOutputStream.hpp libmaus2/aio/MemoryInputStreamBuffer.hpp libmaus2/aio/MemoryInputStreamFactory.hpp libmaus2/aio/MemoryInputStream.hpp libmaus2/aio/MemoryOutputStreamBuffer.hpp libmaus2/aio/MemoryOutputStreamFactory.hpp libmaus2/aio/MemoryOutputStream.hpp libmaus2/aio/FileRemoval.hpp libmaus2/aio/InputStreamPointerWrapper.hpp libmaus2/aio/InputStreamInstance.hpp libmaus2/aio/InputStreamInstanceAtOffset.hpp libmaus2/aio/OutputStreamPointerWrapper.hpp libmaus2/aio/OutputStreamInstance.hpp libmaus2/aio/ConcatInputStreamBuffer.hpp libmaus2/aio/ConcatInputStream.hpp libmaus2/aio/SplitWriter.hpp libmaus2/aio/ArrayInputStreamBuffer.hpp libmaus2/aio/ArrayInputStream.hpp libmaus2/aio/ArrayFile.hpp libmaus2/aio/ArrayFileSet.hpp libmaus2/aio/StreamLock.hpp libmaus2/aio/ArrayFileContainer.hpp libmaus2/aio/ArrayInputStreamFactory.hpp libmaus2/aio/PairFileDecoder.hpp libmaus2/aio/SizeMonitorThread.hpp libmaus2/aio/DebugLineOutputStreamBuffer.hpp libmaus2/aio/DebugLineOutputStream.hpp libmaus2/aio/TempFileArray.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/aio' /usr/bin/install -c -m 644 libmaus2/aio/SerialisedPeeker.hpp libmaus2/aio/GenericPeeker.hpp libmaus2/aio/InputOutputStreamPointerWrapper.hpp libmaus2/aio/InputOutputStreamInstance.hpp libmaus2/aio/InputStreamObject.hpp libmaus2/aio/InputStreamObjectTypeInfo.hpp libmaus2/aio/InputStreamObjectAllocator.hpp libmaus2/aio/OutputStreamInstanceArray.hpp libmaus2/aio/MemoryBackedOutputStreamBuffer.hpp libmaus2/aio/MemoryBackedOutputStream.hpp libmaus2/aio/SkipConcatInputStream.hpp libmaus2/aio/SkipConcatInputStreamBuffer.hpp libmaus2/aio/CountOutputStreamBuffer.hpp libmaus2/aio/CountOutputStream.hpp libmaus2/aio/CharArrayInputStreamBuffer.hpp libmaus2/aio/CharArrayInputStream.hpp libmaus2/aio/CharArrayOutputStreamBuffer.hpp libmaus2/aio/CharArrayOutputStream.hpp libmaus2/aio/SecrecyInputStreamFactory.hpp libmaus2/aio/SecrecyOutputStreamFactory.hpp libmaus2/aio/SecrecyCache.hpp libmaus2/aio/URLObject.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/aio' /usr/bin/mkdir -p '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/alignment' /usr/bin/install -c -m 644 libmaus2/alignment/KmerTuple.hpp libmaus2/alignment/FactorMatchInfo.hpp libmaus2/alignment/KmerInfo.hpp libmaus2/alignment/FactorMatchInfoPosComparator.hpp libmaus2/alignment/FMIIntervalComparator.hpp libmaus2/alignment/BamLineInfo.hpp libmaus2/alignment/SimpleLocalAligner.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/alignment' /usr/bin/mkdir -p '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/arch' /usr/bin/install -c -m 644 libmaus2/arch/I386Features.hpp libmaus2/arch/CacheLineSize.hpp libmaus2/arch/PageSize.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/arch' /usr/bin/mkdir -p '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/autoarray/' /usr/bin/install -c -m 644 libmaus2/autoarray/AutoArray.hpp libmaus2/autoarray/AutoArray2d.hpp libmaus2/autoarray/AutoArrayMultiMap.hpp libmaus2/autoarray/AutoArrayAllocType.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/autoarray/' /usr/bin/mkdir -p '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/avl' /usr/bin/install -c -m 644 libmaus2/avl/AtomicAVLSet.hpp libmaus2/avl/AtomicAVLMap.hpp libmaus2/avl/AtomicAVLPtrValueMap.hpp libmaus2/avl/AVLSet.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/avl' /usr/bin/mkdir -p '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/bambam/' /usr/bin/install -c -m 644 libmaus2/bambam/DecoderBase.hpp libmaus2/bambam/Chromosome.hpp libmaus2/bambam/BamAlignmentDecoderBase.hpp libmaus2/bambam/BamFormatAuxiliary.hpp libmaus2/bambam/EncoderBase.hpp libmaus2/bambam/BamHeader.hpp libmaus2/bambam/BamAlignment.hpp libmaus2/bambam/BamDecoder.hpp libmaus2/bambam/BamAlignmentComparator.hpp libmaus2/bambam/MergeQueueElement.hpp libmaus2/bambam/CigarOperation.hpp libmaus2/bambam/CigarStringParser.hpp libmaus2/bambam/BamSeqEncodeTable.hpp libmaus2/bambam/BamAlignmentEncoderBase.hpp libmaus2/bambam/BamFlagBase.hpp libmaus2/bambam/BamWriter.hpp libmaus2/bambam/HeaderLine.hpp libmaus2/bambam/ProgramHeaderLineSet.hpp libmaus2/bambam/ReadEnds.hpp libmaus2/bambam/ReadEndsHeapPairComparator.hpp libmaus2/bambam/CompactReadEndsBase.hpp libmaus2/bambam/CompactReadEndsComparator.hpp libmaus2/bambam/SortedFragDecoder.hpp libmaus2/bambam/ReadEndsContainer.hpp libmaus2/bambam/DuplicationMetrics.hpp libmaus2/bambam/OpticalComparator.hpp libmaus2/bambam/BamAlignmentHeapComparator.hpp libmaus2/bambam/BamAlignmentNameComparator.hpp libmaus2/bambam/BamAlignmentNameLexicographicComparator.hpp libmaus2/bambam/BamAlignmentNameHIComparator.hpp libmaus2/bambam/BamAlignmentPosComparator.hpp libmaus2/bambam/BamAlignmentTagComparator.hpp libmaus2/bambam/BamAlignmentTagOnlyComparator.hpp libmaus2/bambam/BamEntryContainer.hpp libmaus2/bambam/Scram.h libmaus2/bambam/AlignmentValidity.hpp libmaus2/bambam/ScramDecoder.hpp libmaus2/bambam/ScramEncoder.hpp libmaus2/bambam/SnappyAlignmentMergeInput.hpp libmaus2/bambam/BamAlignmentPrinter.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/bambam/' /usr/bin/install -c -m 644 libmaus2/bambam/BamAlignmentSortingCircularHashEntryOverflow.hpp libmaus2/bambam/CircularHashCollatingBamDecoder.hpp libmaus2/bambam/BamToFastqOutputFileSet.hpp libmaus2/bambam/BamAlignmentDecoder.hpp libmaus2/bambam/CollatingBamDecoderAlignmentInputCallback.hpp libmaus2/bambam/ReadGroup.hpp libmaus2/bambam/BamAuxFilterVector.hpp libmaus2/bambam/BamDefaultAdapters.hpp libmaus2/bambam/AdapterOffsetStrand.hpp libmaus2/bambam/AdapterFilter.hpp libmaus2/bambam/BamIndexBin.hpp libmaus2/bambam/BamIndexLinear.hpp libmaus2/bambam/BamIndexRef.hpp libmaus2/bambam/BamIndex.hpp libmaus2/bambam/BamRange.hpp libmaus2/bambam/BamRangeParser.hpp libmaus2/bambam/BamRangeDecoder.hpp libmaus2/bambam/BamParallelRewrite.hpp libmaus2/bambam/BamAlignmentExpungeCallback.hpp libmaus2/bambam/StrCmpNum.hpp libmaus2/bambam/BamCatHeader.hpp libmaus2/bambam/BamCat.hpp libmaus2/bambam/BamMergeCoordinate.hpp libmaus2/bambam/BamMergeTemplate.hpp libmaus2/bambam/BamMergeQueryName.hpp libmaus2/bambam/BamIndexBinChunk.hpp libmaus2/bambam/BamIndexLinearChunk.hpp libmaus2/bambam/BamIndexGenerator.hpp libmaus2/bambam/BgzfDeflateOutputCallbackBamIndex.hpp libmaus2/bambam/BamAlignmentInputCallbackBam.hpp libmaus2/bambam/BamAlignmentInputCallbackSnappy.hpp libmaus2/bambam/BamHeaderUpdate.hpp libmaus2/bambam/DupSetCallback.hpp libmaus2/bambam/DupSetCallbackSet.hpp libmaus2/bambam/DupSetCallbackStream.hpp libmaus2/bambam/DupSetCallbackVector.hpp libmaus2/bambam/BamAlignmentListNode.hpp libmaus2/bambam/BamAlignmentPairListNode.hpp libmaus2/bambam/ReadEndsListNode.hpp libmaus2/bambam/BamAlignmentFreeList.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/bambam/' /usr/bin/install -c -m 644 libmaus2/bambam/BamAlignmentPairFreeList.hpp libmaus2/bambam/ReadEndsFreeList.hpp libmaus2/bambam/DupMarkBase.hpp libmaus2/bambam/BamAlignmentSnappyInput.hpp libmaus2/bambam/BamAlignmentInputPositionUpdateCallback.hpp libmaus2/bambam/BamAlignmentInputPositionCallbackNull.hpp libmaus2/bambam/BamBlockWriterBase.hpp libmaus2/bambam/BamBlockWriterBaseFactory.hpp libmaus2/bambam/BamAlignmentDecoderInfo.hpp libmaus2/bambam/BamAlignmentDecoderFactory.hpp libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp libmaus2/bambam/BamIndexMetaInfo.hpp libmaus2/bambam/MdStringComputationContext.hpp libmaus2/bambam/BamAlignmentFilter.hpp libmaus2/bambam/BamAlignmentReadGroupFilter.hpp libmaus2/bambam/MdNmRecalculation.hpp libmaus2/bambam/CramRange.hpp libmaus2/bambam/ChromosomeVectorMerge.hpp libmaus2/bambam/BamHeaderLowMem.hpp libmaus2/bambam/GeneFlatFile.hpp libmaus2/bambam/GeneFlatFileEntry.hpp libmaus2/bambam/BamStreamingMarkDuplicatesSupport.hpp libmaus2/bambam/BamStreamingMarkDuplicates.hpp libmaus2/bambam/BamHeaderParserStateBase.hpp libmaus2/bambam/BamHeaderParserState.hpp libmaus2/bambam/BamAlignmentReg2Bin.hpp libmaus2/bambam/SamInfoBase.hpp libmaus2/bambam/SamInfo.hpp libmaus2/bambam/SamPrintableTable.hpp libmaus2/bambam/SamZPrintableTable.hpp libmaus2/bambam/SamDecoder.hpp libmaus2/bambam/SamDecoderWrapper.hpp libmaus2/bambam/BamAlignmentFixedSizeData.hpp libmaus2/bambam/BamAuxSortingBufferEntry.hpp libmaus2/bambam/BamAuxSortingBuffer.hpp libmaus2/bambam/ReadEndsContainerBase.hpp libmaus2/bambam/ReadEndsBlockDecoderBase.hpp libmaus2/bambam/ReadEndsBlockDecoderBaseCollection.hpp libmaus2/bambam/ReadEndsStreamDecoderBase.hpp libmaus2/bambam/ReadEndsStreamDecoderFileBase.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/bambam/' /usr/bin/install -c -m 644 libmaus2/bambam/ReadEndsStreamDecoder.hpp libmaus2/bambam/ReadEndsBasePointerComparator.hpp libmaus2/bambam/ReadEndsBase.hpp libmaus2/bambam/ReadEndsBaseLongHashAttributeComparator.hpp libmaus2/bambam/ReadEndsBaseShortHashAttributeComparator.hpp libmaus2/bambam/ScramInputContainer.hpp libmaus2/bambam/SamEncoder.hpp libmaus2/bambam/ReadEndsBlockDecoderBaseCollectionInfoBase.hpp libmaus2/bambam/ReadEndsBlockDecoderBaseCollectionInfo.hpp libmaus2/bambam/ReadEndsBlockIndexSet.hpp libmaus2/bambam/DupSetCallbackSharedVector.hpp libmaus2/bambam/SamInfoAllocator.hpp libmaus2/bambam/SamInfoTypeInfo.hpp libmaus2/bambam/RgInfo.hpp libmaus2/bambam/SeqChksumPrimeNumbers.hpp libmaus2/bambam/SeqChksumUpdateContext.hpp libmaus2/bambam/ChecksumsInterface.hpp libmaus2/bambam/ChecksumsFactory.hpp libmaus2/bambam/ChecksumsInterfaceAllocator.hpp libmaus2/bambam/ChecksumsInterfaceTypeInfo.hpp libmaus2/bambam/StrCmpNumRecode.hpp libmaus2/bambam/PileVectorElement.hpp libmaus2/bambam/PileQualityVectorElement.hpp libmaus2/bambam/CigarStringReader.hpp libmaus2/bambam/BamAlignmentHashComparator.hpp libmaus2/bambam/CigarRunLengthDecoder.hpp libmaus2/bambam/CigarDecoder.hpp libmaus2/bambam/BamNumericalIndexGenerator.hpp libmaus2/bambam/BamNumericalIndexDecoder.hpp libmaus2/bambam/BamNumericalIndexBase.hpp libmaus2/bambam/BamPeeker.hpp libmaus2/bambam/BamRawPeeker.hpp libmaus2/bambam/OptName.hpp libmaus2/bambam/OptNameReader.hpp libmaus2/bambam/BamAccessor.hpp libmaus2/bambam/BamRawDecoder.hpp libmaus2/bambam/BamNumExtractor.hpp libmaus2/bambam/BgzfDeflateOutputCallbackBamNumericalIndex.hpp libmaus2/bambam/BamHeaderReadGroupInterface.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/bambam/' /usr/bin/mkdir -p '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/bambam/parallel/' /usr/bin/install -c -m 644 libmaus2/bambam/parallel/AddPendingCompressBufferWriteInterface.hpp libmaus2/bambam/parallel/AddWritePendingBgzfBlockInterface.hpp libmaus2/bambam/parallel/AlignmentBlockCompressPackage.hpp libmaus2/bambam/parallel/AlignmentBlockCompressPackageReturnInterface.hpp libmaus2/bambam/parallel/AlignmentBufferAllocator.hpp libmaus2/bambam/parallel/AlignmentBufferHeapComparator.hpp libmaus2/bambam/parallel/AlignmentBuffer.hpp libmaus2/bambam/parallel/AlignmentBufferReinsertInterface.hpp libmaus2/bambam/parallel/AlignmentBufferReturnInterface.hpp libmaus2/bambam/parallel/AlignmentBufferTypeInfo.hpp libmaus2/bambam/parallel/AlignmentRewriteBufferAddPendingInterface.hpp libmaus2/bambam/parallel/AlignmentRewriteBufferAllocator.hpp libmaus2/bambam/parallel/AlignmentRewriteBufferCoordinateComparator.hpp libmaus2/bambam/parallel/AlignmentRewriteBuffer.hpp libmaus2/bambam/parallel/AlignmentRewriteBufferPosComparator.hpp libmaus2/bambam/parallel/AlignmentRewriteBufferReinsertForFillingInterface.hpp libmaus2/bambam/parallel/AlignmentRewritePosMergeSortPackage.hpp libmaus2/bambam/parallel/AlignmentRewritePosSortBaseSortPackage.hpp libmaus2/bambam/parallel/AlignmentRewritePosSortContextBaseBlockSortedInterface.hpp libmaus2/bambam/parallel/AlignmentRewritePosSortContext.hpp libmaus2/bambam/parallel/AlignmentRewritePosSortContextMergePackageFinished.hpp libmaus2/bambam/parallel/BaseMergeSortWorkPackageReturnInterface.hpp libmaus2/bambam/parallel/BaseSortWorkPackageDispatcher.hpp libmaus2/bambam/parallel/BaseSortWorkPackageReturnInterface.hpp libmaus2/bambam/parallel/BgzfInflateZStreamBaseGetInterface.hpp libmaus2/bambam/parallel/BgzfInflateZStreamBaseReturnInterface.hpp libmaus2/bambam/parallel/BgzfLinearMemCompressWorkPackageDispatcher.hpp libmaus2/bambam/parallel/BgzfLinearMemCompressWorkPackage.hpp libmaus2/bambam/parallel/BgzfLinearMemCompressWorkPackageReturnInterface.hpp libmaus2/bambam/parallel/BgzfOutputBlockWrittenInterface.hpp libmaus2/bambam/parallel/BlockCompressPackageDispatcher.hpp libmaus2/bambam/parallel/CompressBufferAllocator.hpp libmaus2/bambam/parallel/CompressBufferHeapComparator.hpp libmaus2/bambam/parallel/CompressBuffer.hpp libmaus2/bambam/parallel/CompressionPendingElement.hpp libmaus2/bambam/parallel/ControlInputInfo.hpp libmaus2/bambam/parallel/DecompressBlocksWorkPackageDispatcher.hpp libmaus2/bambam/parallel/DecompressBlocksWorkPackage.hpp libmaus2/bambam/parallel/DecompressBlocksWorkPackageReturnInterface.hpp libmaus2/bambam/parallel/DecompressBlockWorkPackageDispatcher.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/bambam/parallel/' /usr/bin/install -c -m 644 libmaus2/bambam/parallel/DecompressBlockWorkPackage.hpp libmaus2/bambam/parallel/DecompressBlockWorkPackageReturnInterface.hpp libmaus2/bambam/parallel/DecompressedBlockAddPendingInterface.hpp libmaus2/bambam/parallel/DecompressedBlockAllocator.hpp libmaus2/bambam/parallel/DecompressedBlock.hpp libmaus2/bambam/parallel/DecompressedBlockReturnInterface.hpp libmaus2/bambam/parallel/DecompressedBlockTypeInfo.hpp libmaus2/bambam/parallel/DecompressedPendingObjectHeapComparator.hpp libmaus2/bambam/parallel/DecompressedPendingObject.hpp libmaus2/bambam/parallel/FragmentAlignmentBufferAllocator.hpp libmaus2/bambam/parallel/FragmentAlignmentBufferBaseSortPackage.hpp libmaus2/bambam/parallel/FragmentAlignmentBufferFragment.hpp libmaus2/bambam/parallel/FragmentAlignmentBufferHeapComparator.hpp libmaus2/bambam/parallel/FragmentAlignmentBuffer.hpp libmaus2/bambam/parallel/FragmentAlignmentBufferMergeSortPackage.hpp libmaus2/bambam/parallel/FragmentAlignmentBufferPointerTypeSwitchHelper.hpp libmaus2/bambam/parallel/FragmentAlignmentBufferPointerTypeSwitch.hpp libmaus2/bambam/parallel/FragmentAlignmentBufferRewriteFragmentCompleteInterface.hpp libmaus2/bambam/parallel/FragmentAlignmentBufferRewriteWorkPackageDispatcher.hpp libmaus2/bambam/parallel/FragmentAlignmentBufferRewriteWorkPackage.hpp libmaus2/bambam/parallel/FragmentAlignmentBufferRewriteWorkPackageReturnInterface.hpp libmaus2/bambam/parallel/FragmentAlignmentBufferSortContextBaseBlockSortedInterface.hpp libmaus2/bambam/parallel/FragmentAlignmentBufferSortContext.hpp libmaus2/bambam/parallel/FragmentAlignmentBufferSortContextMergePackageFinished.hpp libmaus2/bambam/parallel/FragmentAlignmentBufferSortFinishedInterface.hpp libmaus2/bambam/parallel/FragmentAlignmentBufferTypeInfo.hpp libmaus2/bambam/parallel/GetBgzfDeflateZStreamBaseInterface.hpp libmaus2/bambam/parallel/InputBlockAddPendingInterface.hpp libmaus2/bambam/parallel/InputBlockAllocator.hpp libmaus2/bambam/parallel/InputBlock.hpp libmaus2/bambam/parallel/InputBlockReturnInterface.hpp libmaus2/bambam/parallel/InputBlockTypeInfo.hpp libmaus2/bambam/parallel/InputBlockWorkPackageDispatcher.hpp libmaus2/bambam/parallel/InputBlockWorkPackage.hpp libmaus2/bambam/parallel/InputBlockWorkPackageReturnInterface.hpp libmaus2/bambam/parallel/MergeSortWorkPackageDispatcher.hpp libmaus2/bambam/parallel/ParseBlockWorkPackageDispatcher.hpp libmaus2/bambam/parallel/ParseBlockWorkPackage.hpp libmaus2/bambam/parallel/ParsedBlockAddPendingInterface.hpp libmaus2/bambam/parallel/ParsedBlockStallInterface.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/bambam/parallel/' /usr/bin/install -c -m 644 libmaus2/bambam/parallel/ParseInfoHeaderCompleteCallback.hpp libmaus2/bambam/parallel/ParseInfo.hpp libmaus2/bambam/parallel/ParsePackageReturnInterface.hpp libmaus2/bambam/parallel/PushBackSpace.hpp libmaus2/bambam/parallel/PutBgzfDeflateZStreamBaseInterface.hpp libmaus2/bambam/parallel/RequeReadInterface.hpp libmaus2/bambam/parallel/ReturnBgzfOutputBufferInterface.hpp libmaus2/bambam/parallel/ReturnCompressionPendingElementInterface.hpp libmaus2/bambam/parallel/ReturnRewriteBufferInterface.hpp libmaus2/bambam/parallel/RewriteBlockWorkPackageDispatcher.hpp libmaus2/bambam/parallel/RewriteBlockWorkPackage.hpp libmaus2/bambam/parallel/RewritePackageReturnInterface.hpp libmaus2/bambam/parallel/SmallLinearBlockCompressionPendingObjectFinishedInterface.hpp libmaus2/bambam/parallel/SmallLinearBlockCompressionPendingObjectHeapComparator.hpp libmaus2/bambam/parallel/SmallLinearBlockCompressionPendingObject.hpp libmaus2/bambam/parallel/SortControl.hpp libmaus2/bambam/parallel/SortFinishedInterface.hpp libmaus2/bambam/parallel/ValidateBlockAddPendingInterface.hpp libmaus2/bambam/parallel/ValidateBlockFragmentAddPendingInterface.hpp libmaus2/bambam/parallel/ValidateBlockFragmentPackageReturnInterface.hpp libmaus2/bambam/parallel/ValidateBlockFragmentWorkPackageDispatcher.hpp libmaus2/bambam/parallel/ValidateBlockFragmentWorkPackage.hpp libmaus2/bambam/parallel/ValidateBlockWorkPackageDispatcher.hpp libmaus2/bambam/parallel/ValidateBlockWorkPackage.hpp libmaus2/bambam/parallel/ValidatePackageReturnInterface.hpp libmaus2/bambam/parallel/ValidationFragment.hpp libmaus2/bambam/parallel/WriteBlockWorkPackageDispatcher.hpp libmaus2/bambam/parallel/WriteBlockWorkPackage.hpp libmaus2/bambam/parallel/WriteBlockWorkPackageReturnInterface.hpp libmaus2/bambam/parallel/WritePendingObjectHeapComparator.hpp libmaus2/bambam/parallel/WritePendingObject.hpp libmaus2/bambam/parallel/FragmentAlignmentBufferBaseSortWorkPackageDispatcher.hpp libmaus2/bambam/parallel/FragmentAlignmentBufferReorderWorkPackage.hpp libmaus2/bambam/parallel/FragmentAlignmentBufferReorderWorkPackageDispatcher.hpp libmaus2/bambam/parallel/FragmentAlignmentBufferReorderWorkPackageReturnInterface.hpp libmaus2/bambam/parallel/FragmentAlignmentBufferReorderWorkPackageFinishedInterface.hpp libmaus2/bambam/parallel/FragmentAlignmentBufferNameComparator.hpp libmaus2/bambam/parallel/FragmentAlignmentBufferRewriteUpdateInterval.hpp libmaus2/bambam/parallel/FragmentAlignmentBufferRewriteReadEndsWorkPackageDispatcher.hpp libmaus2/bambam/parallel/FragmentAlignmentBufferRewriteReadEndsWorkPackage.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/bambam/parallel/' /usr/bin/install -c -m 644 libmaus2/bambam/parallel/FragmentAlignmentBufferRewriteReadEndsWorkPackageReturnInterface.hpp libmaus2/bambam/parallel/ReadEndsContainerAllocator.hpp libmaus2/bambam/parallel/ReadEndsContainerTypeInfo.hpp libmaus2/bambam/parallel/ReadEndsContainerFreeListInterface.hpp libmaus2/bambam/parallel/AddDuplicationMetricsInterface.hpp libmaus2/bambam/parallel/PairReadEndsContainerFlushWorkPackage.hpp libmaus2/bambam/parallel/FragReadEndsContainerFlushWorkPackage.hpp libmaus2/bambam/parallel/FragReadEndsContainerFlushWorkPackageReturnInterface.hpp libmaus2/bambam/parallel/FragReadEndsContainerFlushFinishedInterface.hpp libmaus2/bambam/parallel/FragReadEndsContainerFlushWorkPackageDispatcher.hpp libmaus2/bambam/parallel/PairReadEndsContainerFlushWorkPackageReturnInterface.hpp libmaus2/bambam/parallel/PairReadEndsContainerFlushFinishedInterface.hpp libmaus2/bambam/parallel/ReadEndsMergeRequest.hpp libmaus2/bambam/parallel/FragReadEndsMergeWorkPackage.hpp libmaus2/bambam/parallel/FragReadEndsMergeWorkPackageReturnInterface.hpp libmaus2/bambam/parallel/FragReadEndsMergeWorkPackageFinishedInterface.hpp libmaus2/bambam/parallel/FragReadEndsMergeWorkPackageDispatcher.hpp libmaus2/bambam/parallel/PairReadEndsMergeWorkPackage.hpp libmaus2/bambam/parallel/PairReadEndsMergeWorkPackageReturnInterface.hpp libmaus2/bambam/parallel/PairReadEndsMergeWorkPackageFinishedInterface.hpp libmaus2/bambam/parallel/PairReadEndsMergeWorkPackageDispatcher.hpp libmaus2/bambam/parallel/MemInputBlock.hpp libmaus2/bambam/parallel/GenericInputBamParseObject.hpp libmaus2/bambam/parallel/GenericInputBamParseWorkPackageBlockParsedInterface.hpp libmaus2/bambam/parallel/GenericInputBamParseWorkPackageDispatcher.hpp libmaus2/bambam/parallel/GenericInputBamParseWorkPackage.hpp libmaus2/bambam/parallel/GenericInputBamParseWorkPackageReturnInterface.hpp libmaus2/bambam/parallel/GenericInputBase.hpp libmaus2/bambam/parallel/GenericInputBgzfDecompressionWorkPackageDecompressedBlockReturnInterface.hpp libmaus2/bambam/parallel/GenericInputBgzfDecompressionWorkPackageDispatcher.hpp libmaus2/bambam/parallel/GenericInputBgzfDecompressionWorkPackage.hpp libmaus2/bambam/parallel/GenericInputBgzfDecompressionWorkPackageMemInputBlockReturnInterface.hpp libmaus2/bambam/parallel/GenericInputBgzfDecompressionWorkPackageReturnInterface.hpp libmaus2/bambam/parallel/GenericInputBgzfDecompressionWorkSubBlockDecompressionFinishedInterface.hpp libmaus2/bambam/parallel/GenericInputBlock.hpp libmaus2/bambam/parallel/GenericInputControlMergeBlockFinishedInterface.hpp libmaus2/bambam/parallel/GenericInputControlMergeHeapEntry.hpp libmaus2/bambam/parallel/GenericInputControlMergeRequeue.hpp libmaus2/bambam/parallel/GenericInputControlReadAddPendingInterface.hpp libmaus2/bambam/parallel/GenericInputControlReadWorkPackageDispatcher.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/bambam/parallel/' /usr/bin/install -c -m 644 libmaus2/bambam/parallel/GenericInputControlReadWorkPackage.hpp libmaus2/bambam/parallel/GenericInputControlReadWorkPackageReturnInterface.hpp libmaus2/bambam/parallel/GenericInputControlSetMergeStallSlotInterface.hpp libmaus2/bambam/parallel/GenericInputControlStreamInfo.hpp libmaus2/bambam/parallel/GenericInputControlSubBlockPendingHeapComparator.hpp libmaus2/bambam/parallel/GenericInputControlSubBlockPending.hpp libmaus2/bambam/parallel/GenericInputHeapComparator.hpp libmaus2/bambam/parallel/GenericInputMergeDecompressedBlockReturnInterface.hpp libmaus2/bambam/parallel/GenericInputMergeWorkPackageDispatcher.hpp libmaus2/bambam/parallel/GenericInputMergeWorkPackage.hpp libmaus2/bambam/parallel/GenericInputMergeWorkPackageReturnInterface.hpp libmaus2/bambam/parallel/GenericInputMergeWorkRequest.hpp libmaus2/bambam/parallel/GenericInputSingleDataBamParseInfo.hpp libmaus2/bambam/parallel/GenericInputSingleData.hpp libmaus2/bambam/parallel/GenericInputControlBlockCompressionFinishedInterface.hpp libmaus2/bambam/parallel/GenericInputControlBlockCompressionWorkPackage.hpp libmaus2/bambam/parallel/GenericInputControlBlockCompressionWorkPackageDispatcher.hpp libmaus2/bambam/parallel/GenericInputControlBlockCompressionWorkPackageReturnInterface.hpp libmaus2/bambam/parallel/GenericInputControlCompressionPending.hpp libmaus2/bambam/parallel/GenericInputControlCompressionPendingHeapComparator.hpp libmaus2/bambam/parallel/GenericInputControlGetCompressorInterface.hpp libmaus2/bambam/parallel/GenericInputControlPutCompressorInterface.hpp libmaus2/bambam/parallel/GenericInputControlReorderWorkPackage.hpp libmaus2/bambam/parallel/GenericInputControlReorderWorkPackageDispatcher.hpp libmaus2/bambam/parallel/GenericInputControlReorderWorkPackageFinishedInterface.hpp libmaus2/bambam/parallel/GenericInputControlReorderWorkPackageReturnInterface.hpp libmaus2/bambam/parallel/GenericInputControlBlockWritePackageDispatcher.hpp libmaus2/bambam/parallel/GenericInputControlBlockWritePackageBlockWrittenInterface.hpp libmaus2/bambam/parallel/GenericInputControlBlockWritePackageReturnInterface.hpp libmaus2/bambam/parallel/GenericInputControlBlockWritePackage.hpp libmaus2/bambam/parallel/GenericInputBlockSubBlockInfo.hpp libmaus2/bambam/parallel/GenericInputBlockFillResult.hpp libmaus2/bambam/parallel/GenericInputBlockTypeInfo.hpp libmaus2/bambam/parallel/GenericInputBlockAllocator.hpp libmaus2/bambam/parallel/DecompressedBlockHeapComparator.hpp libmaus2/bambam/parallel/FragmentAlignmentBufferBaseSortWorkPackageReturnInterface.hpp libmaus2/bambam/parallel/FragmentAlignmentBufferMergeSortWorkPackage.hpp libmaus2/bambam/parallel/FragmentAlignmentBufferMergeSortWorkPackageDispatcher.hpp libmaus2/bambam/parallel/PairReadEndsContainerFlushWorkPackageDispatcher.hpp libmaus2/bambam/parallel/FragmentAlignmentBufferMergeSortWorkPackageReturnInterface.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/bambam/parallel/' /usr/bin/install -c -m 644 libmaus2/bambam/parallel/FragmentAlignmentBufferPosComparator.hpp libmaus2/bambam/parallel/SamParsePending.hpp libmaus2/bambam/parallel/SamParsePendingHeapComparator.hpp libmaus2/bambam/parallel/SamParseWorkPackage.hpp libmaus2/bambam/parallel/BlockSortControlBase.hpp libmaus2/bambam/parallel/SamParsePutSamInfoInterface.hpp libmaus2/bambam/parallel/SamParseGetSamInfoInterface.hpp libmaus2/bambam/parallel/SamParseFragmentParsedInterface.hpp libmaus2/bambam/parallel/SamParseDecompressedBlockFinishedInterface.hpp libmaus2/bambam/parallel/SamParseWorkPackageReturnInterface.hpp libmaus2/bambam/parallel/SamParseWorkPackageDispatcher.hpp libmaus2/bambam/parallel/BlockSortControl.hpp libmaus2/bambam/parallel/BlockMergeControl.hpp libmaus2/bambam/parallel/GenericInputControlBlocksWritePackage.hpp libmaus2/bambam/parallel/FastQInputDescBase.hpp libmaus2/bambam/parallel/FastqToBamControlInputBlockHeapComparator.hpp libmaus2/bambam/parallel/FastqToBamControlSubReadPending.hpp libmaus2/bambam/parallel/FastqToBamControlSubReadPendingHeapComparator.hpp libmaus2/bambam/parallel/DecompressedBlockReorderHeapComparator.hpp libmaus2/bambam/parallel/FastQInputDesc.hpp libmaus2/bambam/parallel/FastqInputPackage.hpp libmaus2/bambam/parallel/FastqInputPackageReturnInterface.hpp libmaus2/bambam/parallel/FastqInputPackageAddPendingInterface.hpp libmaus2/bambam/parallel/FastqInputPackageDispatcher.hpp libmaus2/bambam/parallel/FastqParsePackage.hpp libmaus2/bambam/parallel/FastqParsePackageReturnInterface.hpp libmaus2/bambam/parallel/FastqParsePackageFinishedInterface.hpp libmaus2/bambam/parallel/FastqParsePackageDispatcher.hpp libmaus2/bambam/parallel/FastqToBamControl.hpp libmaus2/bambam/parallel/GenericInputControlBlocksWritePackageDispatcher.hpp libmaus2/bambam/parallel/GenericInputControlBlocksWritePackageReturnInterface.hpp libmaus2/bambam/parallel/ChecksumsInterfaceGetInterface.hpp libmaus2/bambam/parallel/ChecksumsInterfacePutInterface.hpp libmaus2/bambam/parallel/FileChecksumBlockWorkPackage.hpp libmaus2/bambam/parallel/FileChecksumBlockWorkPackageReturnInterface.hpp libmaus2/bambam/parallel/FileChecksumBlockFinishedInterface.hpp libmaus2/bambam/parallel/FileChecksumBlockWorkPackageDispatcher.hpp libmaus2/bambam/parallel/BamBlockIndexingWorkPackage.hpp libmaus2/bambam/parallel/BamBlockIndexingWorkPackageReturnInterface.hpp libmaus2/bambam/parallel/BamBlockIndexingBlockFinishedInterface.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/bambam/parallel/' /usr/bin/install -c -m 644 libmaus2/bambam/parallel/BamBlockIndexingWorkPackageDispatcher.hpp libmaus2/bambam/parallel/CramInterface.h libmaus2/bambam/parallel/CramOutputBlock.hpp libmaus2/bambam/parallel/CramOutputBlockSizeComparator.hpp libmaus2/bambam/parallel/SamEncoderObject.hpp libmaus2/bambam/parallel/CramOutputBlockWritePackage.hpp libmaus2/bambam/parallel/CramOutputBlockWritePackageReturnInterface.hpp libmaus2/bambam/parallel/CramOutputBlockWritePackageFinishedInterface.hpp libmaus2/bambam/parallel/CramOutputBlockWritePackageDispatcher.hpp libmaus2/bambam/parallel/CramPassPointerObject.hpp libmaus2/bambam/parallel/CramPassPointerObjectComparator.hpp libmaus2/bambam/parallel/CramPassPointerObjectTypeInfo.hpp libmaus2/bambam/parallel/CramPassPointerObjectAllocator.hpp libmaus2/bambam/parallel/ScramCramEncoding.hpp libmaus2/bambam/parallel/CramOutputBlockIdComparator.hpp libmaus2/bambam/parallel/FragmentAlignmentBufferQueryNameComparator.hpp libmaus2/bambam/parallel/CramEncodingWorkPackage.hpp libmaus2/bambam/parallel/SamEncodingWorkPackage.hpp libmaus2/bambam/parallel/SamEncodingWorkPackageWrapper.hpp libmaus2/bambam/parallel/CramOutputBlockChecksumPackage.hpp libmaus2/bambam/parallel/CramOutputBlockChecksumPackageReturnInterface.hpp libmaus2/bambam/parallel/CramOutputBlockChecksumComputedInterface.hpp libmaus2/bambam/parallel/CramOutputBlockChecksumPackageDispatcher.hpp libmaus2/bambam/parallel/CramEncodingWorkPackageReturnInterface.hpp libmaus2/bambam/parallel/SamEncodingWorkPackageWrapperReturnInterface.hpp libmaus2/bambam/parallel/SamEncodingWorkPackageDispatcher.hpp libmaus2/bambam/parallel/BlockMergeControlTypeBase.hpp libmaus2/bambam/parallel/CramEncodingSupportData.hpp libmaus2/bambam/parallel/CramEncodingWorkPackageDispatcher.hpp libmaus2/bambam/parallel/RefIdInterval.hpp libmaus2/bambam/parallel/BamBlockNumericalIndexingBlockFinishedInterface.hpp libmaus2/bambam/parallel/BamBlockNumericalIndexingWorkPackage.hpp libmaus2/bambam/parallel/BamBlockNumericalIndexingWorkPackageDispatcher.hpp libmaus2/bambam/parallel/BamBlockNumericalIndexingWorkPackageReturnInterface.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/bambam/parallel/' /usr/bin/mkdir -p '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/bed/' /usr/bin/install -c -m 644 libmaus2/bed/BED.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/bed/' /usr/bin/mkdir -p '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/bitbtree' /usr/bin/install -c -m 644 libmaus2/bitbtree/bitbtree.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/bitbtree' /usr/bin/mkdir -p '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/bitio' /usr/bin/install -c -m 644 libmaus2/bitio/BitIO.hpp libmaus2/bitio/BitIOOutput.hpp libmaus2/bitio/CompactArray.hpp libmaus2/bitio/CompactArrayBase.hpp libmaus2/bitio/OutputBuffer.hpp libmaus2/bitio/BitIOInput.hpp libmaus2/bitio/getBits.hpp libmaus2/bitio/ReverseTable.hpp libmaus2/bitio/CompactQueue.hpp libmaus2/bitio/putBits.hpp libmaus2/bitio/SwapWordBitBlock.hpp libmaus2/bitio/swapBitBlocksByReversal.hpp libmaus2/bitio/putBit.hpp libmaus2/bitio/getBit.hpp libmaus2/bitio/readElias.hpp libmaus2/bitio/BitWriter.hpp libmaus2/bitio/CheckedBitWriter.hpp libmaus2/bitio/FastWriteBitWriter.hpp libmaus2/bitio/BitVector.hpp libmaus2/bitio/SignedCompactArray.hpp libmaus2/bitio/BufferIterator.hpp libmaus2/bitio/BitVectorConcat.hpp libmaus2/bitio/CompactSparseArray.hpp libmaus2/bitio/CompactOffsetArray.hpp libmaus2/bitio/CompactOffsetOneArray.hpp libmaus2/bitio/ArrayDecode.hpp libmaus2/bitio/BitStreamFileDecoder.hpp libmaus2/bitio/Clz.hpp libmaus2/bitio/CompactDecoderBuffer.hpp libmaus2/bitio/Ctz.hpp libmaus2/bitio/CompactArrayWriter.hpp libmaus2/bitio/CompactArrayWriterFile.hpp libmaus2/bitio/PacDecoderBuffer.hpp libmaus2/bitio/MarkerFastWriteBitWriter.hpp libmaus2/bitio/BitVectorInput.hpp libmaus2/bitio/BitVectorOutput.hpp libmaus2/bitio/BitSet.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/bitio' /usr/bin/mkdir -p '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/btree' /usr/bin/install -c -m 644 libmaus2/btree/btree.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/btree' /usr/bin/mkdir -p '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/clustering' /usr/bin/install -c -m 644 libmaus2/clustering/HashCreation.hpp libmaus2/clustering/HashCreationBase.hpp libmaus2/clustering/ProduceEdgeRequest.hpp libmaus2/clustering/KmerBase.hpp libmaus2/clustering/KMeans.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/clustering' /usr/bin/mkdir -p '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/cumfreq' /usr/bin/install -c -m 644 libmaus2/cumfreq/DynamicCumulativeFrequencies.hpp libmaus2/cumfreq/SlowCumFreq.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/cumfreq' /usr/bin/mkdir -p '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/dazzler/align' /usr/bin/install -c -m 644 libmaus2/dazzler/align/AlignmentFile.hpp libmaus2/dazzler/align/Path.hpp libmaus2/dazzler/align/Overlap.hpp libmaus2/dazzler/align/TraceBlock.hpp libmaus2/dazzler/align/TraceBlockVectorCache.hpp libmaus2/dazzler/align/ApproximateRun.hpp libmaus2/dazzler/align/ApproximateRunPartContainer.hpp libmaus2/dazzler/align/SortingOverlapOutputBuffer.hpp libmaus2/dazzler/align/OverlapHeapComparator.hpp libmaus2/dazzler/align/SortingOverlapBlockInput.hpp libmaus2/dazzler/align/SortingOverlapOutputBufferMerger.hpp libmaus2/dazzler/align/AlignmentSplitWriter.hpp libmaus2/dazzler/align/OverlapMeta.hpp libmaus2/dazzler/align/OverlapIndexerBase.hpp libmaus2/dazzler/align/OverlapIndexer.hpp libmaus2/dazzler/align/AlignmentWriter.hpp libmaus2/dazzler/align/OverlapMetaIteratorGet.hpp libmaus2/dazzler/align/AlignmentFileRegion.hpp libmaus2/dazzler/align/CompactRunPartContainer.hpp libmaus2/dazzler/align/Tandem.hpp libmaus2/dazzler/align/TandemVector.hpp libmaus2/dazzler/align/TandemVectorPartContainer.hpp libmaus2/dazzler/align/TracePoint.hpp libmaus2/dazzler/align/OverlapParser.hpp libmaus2/dazzler/align/OverlapData.hpp libmaus2/dazzler/align/SimpleOverlapParser.hpp libmaus2/dazzler/align/SimpleOverlapVectorParser.hpp libmaus2/dazzler/align/LASToBamConverterBase.hpp libmaus2/dazzler/align/RefMapEntry.hpp libmaus2/dazzler/align/RefMapEntryVector.hpp libmaus2/dazzler/align/TrueOverlapStats.hpp libmaus2/dazzler/align/TrueOverlap.hpp libmaus2/dazzler/align/AlignmentWriterArray.hpp libmaus2/dazzler/align/OverlapProperCheck.hpp libmaus2/dazzler/align/DalignerIndexDecoder.hpp libmaus2/dazzler/align/AlignmentFileDecoder.hpp libmaus2/dazzler/align/OverlapHeader.hpp libmaus2/dazzler/align/GraphDecoderContextAllocator.hpp libmaus2/dazzler/align/GraphDecoderContext.hpp libmaus2/dazzler/align/GraphDecoderContextTypeInfo.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/dazzler/align' /usr/bin/install -c -m 644 libmaus2/dazzler/align/GraphDecoder.hpp libmaus2/dazzler/align/GraphEncoder.hpp libmaus2/dazzler/align/OverlapInfo.hpp libmaus2/dazzler/align/OverlapInfoIndexer.hpp libmaus2/dazzler/align/AlignmentFileSymmetryCheck.hpp libmaus2/dazzler/align/AlignmentFileCat.hpp libmaus2/dazzler/align/LasIntervals.hpp libmaus2/dazzler/align/BinIndexDecoder.hpp libmaus2/dazzler/align/LasRangeDecoder.hpp libmaus2/dazzler/align/OverlapDataInterface.hpp libmaus2/dazzler/align/SortOrderCheck.hpp libmaus2/dazzler/align/GraphCheck.hpp libmaus2/dazzler/align/FilterUnique.hpp libmaus2/dazzler/align/LasFileRange.hpp libmaus2/dazzler/align/LasSort2.hpp libmaus2/dazzler/align/OverlapAdapter.hpp libmaus2/dazzler/align/GetTransitiveStrict.hpp libmaus2/dazzler/align/ReadIntervals.hpp libmaus2/dazzler/align/ReadIntervalsVector.hpp libmaus2/dazzler/align/SubIntervalResult.hpp libmaus2/dazzler/align/AlignmentFileConstants.hpp libmaus2/dazzler/align/LasSort2Cascade.hpp libmaus2/dazzler/align/LasMerge2.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/dazzler/align' /usr/bin/mkdir -p '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/dazzler/db' /usr/bin/install -c -m 644 libmaus2/dazzler/db/IndexBase.hpp libmaus2/dazzler/db/FastaInfo.hpp libmaus2/dazzler/db/DatabaseFile.hpp libmaus2/dazzler/db/InputBase.hpp libmaus2/dazzler/db/GetByteCounter.hpp libmaus2/dazzler/db/Read.hpp libmaus2/dazzler/db/OutputBase.hpp libmaus2/dazzler/db/TrackAnnoInterface.hpp libmaus2/dazzler/db/TrackAnno.hpp libmaus2/dazzler/db/Track.hpp libmaus2/dazzler/db/InqualContainer.hpp libmaus2/dazzler/db/PartTrackContainer.hpp libmaus2/dazzler/db/ReadLRUContainer.hpp libmaus2/dazzler/db/SatsContainer.hpp libmaus2/dazzler/db/ReadContainer.hpp libmaus2/dazzler/db/StringTrackWriter.hpp libmaus2/dazzler/db/IQVDecoder.hpp libmaus2/dazzler/db/TrackExtra.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/dazzler/db' /usr/bin/mkdir -p '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/dazzler/stringgraph' /usr/bin/install -c -m 644 libmaus2/dazzler/stringgraph/Edge.hpp libmaus2/dazzler/stringgraph/OverlapNode.hpp libmaus2/dazzler/stringgraph/StringGraph.hpp libmaus2/dazzler/stringgraph/ContainmentInfo.hpp libmaus2/dazzler/stringgraph/TraversalElement.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/dazzler/stringgraph' /usr/bin/mkdir -p '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/deleter' /usr/bin/install -c -m 644 libmaus2/deleter/Deleter.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/deleter' /usr/bin/mkdir -p '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/demangle' /usr/bin/install -c -m 644 libmaus2/demangle/Demangle.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/demangle' /usr/bin/mkdir -p '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/digest' /usr/bin/install -c -m 644 libmaus2/digest/DigestBase.hpp libmaus2/digest/SHA1.hpp libmaus2/digest/SHA2_224.hpp libmaus2/digest/SHA2_256.hpp libmaus2/digest/SHA2_384.hpp libmaus2/digest/SHA2_512.hpp libmaus2/digest/CRC32.hpp libmaus2/digest/Digests.hpp libmaus2/digest/Null.hpp libmaus2/digest/CRC32C_Core.hpp libmaus2/digest/CRC32C.hpp libmaus2/digest/CRC32_Core.hpp libmaus2/digest/DigestInterface.hpp libmaus2/digest/DigestFactory.hpp libmaus2/digest/DigestFactoryContainer.hpp libmaus2/digest/DigestFactoryInterface.hpp libmaus2/digest/md5.hpp libmaus2/digest/md5.h libmaus2/digest/MurmurHash3_x64_128.hpp libmaus2/digest/SHA3_256.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/digest' /usr/bin/mkdir -p '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/eta' /usr/bin/install -c -m 644 libmaus2/eta/LinearETA.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/eta' /usr/bin/mkdir -p '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/exception' /usr/bin/install -c -m 644 libmaus2/exception/LibMausException.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/exception' /usr/bin/mkdir -p '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/fastx' /usr/bin/install -c -m 644 libmaus2/fastx/CharTermTable.hpp libmaus2/fastx/SpaceTable.hpp libmaus2/fastx/CharBuffer.hpp libmaus2/fastx/Pattern.hpp libmaus2/fastx/acgtnMap.hpp libmaus2/fastx/FastAReader.hpp libmaus2/fastx/PatternBlock.hpp libmaus2/fastx/FastIDBlock.hpp libmaus2/fastx/FastQReader.hpp libmaus2/fastx/FASTQEntry.hpp libmaus2/fastx/isFastQ.hpp libmaus2/fastx/MultiWordDNABitBuffer.hpp libmaus2/fastx/SingleWordDNABitBuffer.hpp libmaus2/fastx/FastInterval.hpp libmaus2/fastx/FastAReaderSplit.hpp libmaus2/fastx/FastQReaderSplit.hpp libmaus2/fastx/ConcatWriter.hpp libmaus2/fastx/FastFirstToLastReverseAdapter.hpp libmaus2/fastx/CompactFastDecoderBase.hpp libmaus2/fastx/CompactFastDecoder.hpp libmaus2/fastx/CompactFastEncoder.hpp libmaus2/fastx/CompactReadContainer.hpp libmaus2/fastx/SubSamplingFastReader.hpp libmaus2/fastx/SlashStrip.hpp libmaus2/fastx/FirstWhiteSpaceSlashStrip.hpp libmaus2/fastx/Phred.hpp libmaus2/fastx/FastQElement.hpp libmaus2/fastx/ComputeFastXIntervals.hpp libmaus2/fastx/FqWeightQuantiser.hpp libmaus2/fastx/CompactFastQHeader.hpp libmaus2/fastx/CompactFastQContext.hpp libmaus2/fastx/CompactFastQDecoderBase.hpp libmaus2/fastx/CompactFastQContainerDictionary.hpp libmaus2/fastx/CompactFastQContainer.hpp libmaus2/fastx/CompactFastQContainerDictionaryCreator.hpp libmaus2/fastx/CompactFastQBlockGenerator.hpp libmaus2/fastx/CompactFastQSingleBlockReader.hpp libmaus2/fastx/CompactFastQMultiBlockReader.hpp libmaus2/fastx/CompactFastTerminator.hpp libmaus2/fastx/CompactFastReplace.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/fastx' /usr/bin/install -c -m 644 libmaus2/fastx/QReorder.hpp libmaus2/fastx/StreamFastReaderBase.hpp libmaus2/fastx/StreamFastQReader.hpp libmaus2/fastx/GzipStreamFastQReader.hpp libmaus2/fastx/GzipFileFastQReader.hpp libmaus2/fastx/FastQBgzfWriter.hpp libmaus2/fastx/StreamFastAReader.hpp libmaus2/fastx/FastALineParserLineInfo.hpp libmaus2/fastx/FastADefinedBasesTable.hpp libmaus2/fastx/FastAMapTable.hpp libmaus2/fastx/FastAMatchTable.hpp libmaus2/fastx/FastALineParser.hpp libmaus2/fastx/FastAStreamWrapper.hpp libmaus2/fastx/FastAStream.hpp libmaus2/fastx/FastAStreamSet.hpp libmaus2/fastx/BgzfFastAIndexEntry.hpp libmaus2/fastx/BgzfFastAIndexEntryNameComparator.hpp libmaus2/fastx/BgzfFastAIndexEntryIdComparator.hpp libmaus2/fastx/FastABgzfIndexEntry.hpp libmaus2/fastx/FastABgzfIndex.hpp libmaus2/fastx/FastABgzfDecoder.hpp libmaus2/fastx/FastABgzfDecoderBuffer.hpp libmaus2/fastx/FastAIndexEntry.hpp libmaus2/fastx/FastAIndex.hpp libmaus2/fastx/FastAInfo.hpp libmaus2/fastx/FastATwoBitTable.hpp libmaus2/fastx/FastABPConstants.hpp libmaus2/fastx/FastABPGenerator.hpp libmaus2/fastx/FastaBPSequenceDecoder.hpp libmaus2/fastx/FastaBPDecoder.hpp libmaus2/fastx/NameInfoBase.hpp libmaus2/fastx/NameInfo.hpp libmaus2/fastx/RefPathToken.hpp libmaus2/fastx/RefPathTokenVector.hpp libmaus2/fastx/RefPathTokenVectorSequence.hpp libmaus2/fastx/RefPathLookup.hpp libmaus2/fastx/DNAIndexMetaDataSequence.hpp libmaus2/fastx/DNAIndexMetaData.hpp libmaus2/fastx/DNAIndexMetaDataBigBand.hpp libmaus2/fastx/DNAIndexMetaDataBigBandBiDir.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/fastx' /usr/bin/install -c -m 644 libmaus2/fastx/CoordinateCache.hpp libmaus2/fastx/LineBufferFastAReader.hpp libmaus2/fastx/FastAToCompact4BigBandBiDir.hpp libmaus2/fastx/FastAToCompact4BigBand.hpp libmaus2/fastx/FastAIndexGenerator.hpp libmaus2/fastx/CoordinateCacheBiDir.hpp libmaus2/fastx/KmerFreqInWindowStats.hpp libmaus2/fastx/ReadContainer.hpp libmaus2/fastx/KmerRepeatDetector.hpp libmaus2/fastx/FastaPeeker.hpp libmaus2/fastx/FastqPeeker.hpp libmaus2/fastx/KmerCount.hpp libmaus2/fastx/GCContent.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/fastx' /usr/bin/mkdir -p '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/fm' /usr/bin/install -c -m 644 libmaus2/fm/FM.hpp libmaus2/fm/SampledSA.hpp libmaus2/fm/SampledISA.hpp libmaus2/fm/MausFmToBwaConversion.hpp libmaus2/fm/BidirectionalIndexInterval.hpp libmaus2/fm/BidirectionalIndexIntervalSymbol.hpp libmaus2/fm/DictionaryInfo.hpp libmaus2/fm/DictionaryInfoImpCompactHuffmanWaveletTree.hpp libmaus2/fm/BidirectionalDnaIndexTemplate.hpp libmaus2/fm/KmerCache.hpp libmaus2/fm/FA4CompactSampledSuffixArray.hpp libmaus2/fm/BiIndex.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/fm' /usr/bin/mkdir -p '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/gamma/' /usr/bin/install -c -m 644 libmaus2/gamma/GammaGenericBase.hpp libmaus2/gamma/GammaGenericClz.hpp libmaus2/gamma/GammaGenericDecoder.hpp libmaus2/gamma/GammaGenericEncoder.hpp libmaus2/gamma/GammaEncoder.hpp libmaus2/gamma/GammaDecoder.hpp libmaus2/gamma/GammaGapEncoder.hpp libmaus2/gamma/GammaGapDecoder.hpp libmaus2/gamma/GammaRLDecoder.hpp libmaus2/gamma/GammaRLEncoder.hpp libmaus2/gamma/SparseGammaGapEncoder.hpp libmaus2/gamma/SparseGammaGapDecoder.hpp libmaus2/gamma/SparseGammaGapMerge.hpp libmaus2/gamma/SparseGammaGapFile.hpp libmaus2/gamma/SparseGammaGapMultiFile.hpp libmaus2/gamma/SparseGammaGapFileSet.hpp libmaus2/gamma/SparseGammaGapFileLevelSet.hpp libmaus2/gamma/SparseGammaGapFileIndexDecoderEntry.hpp libmaus2/gamma/SparseGammaGapFileIndexDecoder.hpp libmaus2/gamma/SparseGammaGapFileIndexMultiDecoder.hpp libmaus2/gamma/SparseGammaGapConcatDecoder.hpp libmaus2/gamma/SparseGammaGapMultiFileSet.hpp libmaus2/gamma/SparseGammaGapMultiFileLevelSet.hpp libmaus2/gamma/SparseGammaGapBlockEncoder.hpp libmaus2/gamma/GammaDifferenceEncoder.hpp libmaus2/gamma/GammaDifferenceDecoder.hpp libmaus2/gamma/GammaDifferenceMerge.hpp libmaus2/gamma/GammaDifferenceOutputBuffer.hpp libmaus2/gamma/GammaEncoderBase.hpp libmaus2/gamma/SimpleGammaEncoderData.hpp libmaus2/gamma/SimpleGammaEncoder.hpp libmaus2/gamma/GammaDecoderBase.hpp libmaus2/gamma/SimpleGammaDecoderData.hpp libmaus2/gamma/SimpleGammaDecoder.hpp libmaus2/gamma/SimpleGammaEncoderArray.hpp libmaus2/gamma/GammaPartitionEncoder.hpp libmaus2/gamma/GammaIntervalEncoder.hpp libmaus2/gamma/GammaPartitionDecoder.hpp libmaus2/gamma/GammaIntervalDecoder.hpp libmaus2/gamma/GammaPDEncoder.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/gamma/' /usr/bin/install -c -m 644 libmaus2/gamma/GammaPDDecoder.hpp libmaus2/gamma/GammaPDIndexDecoderBase.hpp libmaus2/gamma/GammaPDIndexDecoder.hpp libmaus2/gamma/Interval.hpp libmaus2/gamma/FlaggedInterval.hpp libmaus2/gamma/GammaFlaggedPartitionDecoder.hpp libmaus2/gamma/GammaFlaggedPartitionEncoder.hpp libmaus2/gamma/GammaFlaggedIntervalDecoder.hpp libmaus2/gamma/GammaFlaggedIntervalEncoder.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/gamma/' /usr/bin/mkdir -p '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/geometry' /usr/bin/install -c -m 644 libmaus2/geometry/RangeSet.hpp libmaus2/geometry/IntervalTree.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/geometry' /usr/bin/mkdir -p '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/graph' /usr/bin/install -c -m 644 libmaus2/graph/StronglyConnectedComponents.hpp libmaus2/graph/IdentityTargetProjector.hpp libmaus2/graph/ReachableVertices.hpp libmaus2/graph/TopologicalSorting.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/graph' /usr/bin/mkdir -p '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/gtf/' /usr/bin/install -c -m 644 libmaus2/gtf/BAMGTFMap.hpp libmaus2/gtf/CDS.hpp libmaus2/gtf/Exon.hpp libmaus2/gtf/ExonIdOffsetComparator.hpp libmaus2/gtf/ExonInfo.hpp libmaus2/gtf/ExonInterval.hpp libmaus2/gtf/ExonSubInfo.hpp libmaus2/gtf/Gene.hpp libmaus2/gtf/GeneChrComparator.hpp libmaus2/gtf/GeneRangeSets.hpp libmaus2/gtf/GTFData.hpp libmaus2/gtf/IntervalList.hpp libmaus2/gtf/IntervalListSet.hpp libmaus2/gtf/RangeSets.hpp libmaus2/gtf/Tag.hpp libmaus2/gtf/Transcript.hpp libmaus2/gtf/TranscriptRangeSets.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/gtf/' /usr/bin/mkdir -p '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/hashing' /usr/bin/install -c -m 644 libmaus2/hashing/hash.hpp libmaus2/hashing/CircularHash.hpp libmaus2/hashing/ConstantStringHash.hpp libmaus2/hashing/Crc32.hpp libmaus2/hashing/MurmurHash3.h '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/hashing' /usr/bin/mkdir -p '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/huffman' /usr/bin/install -c -m 644 libmaus2/huffman/CompressTable.hpp libmaus2/huffman/DecodeTable.hpp libmaus2/huffman/EncodeTable.hpp libmaus2/huffman/hufEncodeString.hpp libmaus2/huffman/HuffmanBase.hpp libmaus2/huffman/huffman.hpp libmaus2/huffman/HuffmanSorting.hpp libmaus2/huffman/HuffmanTreeInnerNode.hpp libmaus2/huffman/HuffmanTreeLeafComparator.hpp libmaus2/huffman/HuffmanTreeLeaf.hpp libmaus2/huffman/HuffmanTreeNode.hpp libmaus2/huffman/CanonicalEncoder.hpp libmaus2/huffman/RLDecoder.hpp libmaus2/huffman/RLEncoder.hpp libmaus2/huffman/HuffmanEncoderFile.hpp libmaus2/huffman/IndexLoader.hpp libmaus2/huffman/GapDecoder.hpp libmaus2/huffman/GapEncoder.hpp libmaus2/huffman/FileStreamBaseType.hpp libmaus2/huffman/BitInputBuffer.hpp libmaus2/huffman/PairAddSecond.hpp libmaus2/huffman/IndexEntry.hpp libmaus2/huffman/IndexLoaderBase.hpp libmaus2/huffman/RLDecoderIndexBase.hpp libmaus2/huffman/GapDecoderIndexBase.hpp libmaus2/huffman/IndexDecoderDataArray.hpp libmaus2/huffman/HuffmanInputFile.hpp libmaus2/huffman/KvInitResult.hpp libmaus2/huffman/HuffmanTree.hpp libmaus2/huffman/SymCountEncoder.hpp libmaus2/huffman/SymCountDecoder.hpp libmaus2/huffman/SymCount.hpp libmaus2/huffman/IndexWriter.hpp libmaus2/huffman/SymCountRun.hpp libmaus2/huffman/RLInitType.hpp libmaus2/huffman/RLRun.hpp libmaus2/huffman/LFInfo.hpp libmaus2/huffman/LFSupportDecoder.hpp libmaus2/huffman/LFSupportEncoder.hpp libmaus2/huffman/LFSupportBitDecoder.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/huffman' /usr/bin/install -c -m 644 libmaus2/huffman/LFSetBit.hpp libmaus2/huffman/LFSetBitDecoder.hpp libmaus2/huffman/LFSetBitEncoder.hpp libmaus2/huffman/LFValueEncoder.hpp libmaus2/huffman/LFValueDecoder.hpp libmaus2/huffman/LFValue.hpp libmaus2/huffman/LFPhiPairDecoder.hpp libmaus2/huffman/LFPhiPairEncoder.hpp libmaus2/huffman/LFPhiPair.hpp libmaus2/huffman/LFPhiPairLCP.hpp libmaus2/huffman/LFPhiPairLCPDecoder.hpp libmaus2/huffman/LFPhiPairLCPEncoder.hpp libmaus2/huffman/LFRankLCP.hpp libmaus2/huffman/LFRankLCPDecoder.hpp libmaus2/huffman/LFRankLCPEncoder.hpp libmaus2/huffman/SymBit.hpp libmaus2/huffman/SymBitDecoder.hpp libmaus2/huffman/SymBitEncoder.hpp libmaus2/huffman/SymBitRun.hpp libmaus2/huffman/LFRankPos.hpp libmaus2/huffman/LFRankPosEncoder.hpp libmaus2/huffman/LFRankPosDecoder.hpp libmaus2/huffman/LFSymRankPos.hpp libmaus2/huffman/LFSymRankPosDecoder.hpp libmaus2/huffman/LFSymRankPosEncoder.hpp libmaus2/huffman/InputAdapter.hpp libmaus2/huffman/OutputAdapter.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/huffman' /usr/bin/mkdir -p '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/index/' /usr/bin/install -c -m 644 libmaus2/index/ExternalMemoryIndexGenerator.hpp libmaus2/index/ExternalMemoryIndexRecord.hpp libmaus2/index/ExternalMemoryIndexDecoder.hpp libmaus2/index/ExternalMemoryIndexDecoderFindLargestSmallerResult.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/index/' /usr/bin/mkdir -p '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/lcp' /usr/bin/install -c -m 644 libmaus2/lcp/LCP.hpp libmaus2/lcp/SuccinctLCP.hpp libmaus2/lcp/WaveletLCPResult.hpp libmaus2/lcp/WaveletLCP.hpp libmaus2/lcp/ComputeSuccinctLCPResult.hpp libmaus2/lcp/PLCPBitDecoder.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/lcp' /usr/bin/mkdir -p '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/lcs' /usr/bin/install -c -m 644 libmaus2/lcs/SuffixArrayLCS.hpp libmaus2/lcs/LCSRef.hpp libmaus2/lcs/LCSDynamic.hpp libmaus2/lcs/SuffixPrefix.hpp libmaus2/lcs/LCS.hpp libmaus2/lcs/GenericEditDistance.hpp libmaus2/lcs/EditDistanceResult.hpp libmaus2/lcs/BaseConstants.hpp libmaus2/lcs/PenaltyConstants.hpp libmaus2/lcs/TraceContainer.hpp libmaus2/lcs/GenericAlignmentPrint.hpp libmaus2/lcs/SuffixPrefixResult.hpp libmaus2/lcs/SuffixPrefixAlignmentPrint.hpp libmaus2/lcs/DistNodeType.hpp libmaus2/lcs/OverlapOrientation.hpp libmaus2/lcs/AlignmentPrint.hpp libmaus2/lcs/AlignmentTraceContainer.hpp libmaus2/lcs/EditDistance.hpp libmaus2/lcs/BandedEditDistance.hpp libmaus2/lcs/MetaEditDistance.hpp libmaus2/lcs/EditDistanceTraceContainer.hpp libmaus2/lcs/EditDistancePriorityType.hpp libmaus2/lcs/LocalBaseConstants.hpp libmaus2/lcs/LocalPenaltyConstants.hpp libmaus2/lcs/LocalAlignmentTraceContainer.hpp libmaus2/lcs/LocalEditDistanceTraceContainer.hpp libmaus2/lcs/LocalAlignmentPrint.hpp libmaus2/lcs/LocalEditDistance.hpp libmaus2/lcs/LocalEditDistanceResult.hpp libmaus2/lcs/MetaLocalEditDistance.hpp libmaus2/lcs/BandedLocalEditDistance.hpp libmaus2/lcs/AlignmentStatistics.hpp libmaus2/lcs/BitVectorResultCallbackInterface.hpp libmaus2/lcs/BitVector.hpp libmaus2/lcs/SimdX86GlobalAlignmentConstants128.hpp libmaus2/lcs/SimdX86GlobalAlignmentConstants256.hpp libmaus2/lcs/SimdX86GlobalAlignmentTemplate.hpp libmaus2/lcs/SimdX86GlobalAlignmentX128_16_def.hpp libmaus2/lcs/SimdX86GlobalAlignmentX128_16.hpp libmaus2/lcs/SimdX86GlobalAlignmentX128_16_undef.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/lcs' /usr/bin/install -c -m 644 libmaus2/lcs/SimdX86GlobalAlignmentX128_8_def.hpp libmaus2/lcs/SimdX86GlobalAlignmentX128_8.hpp libmaus2/lcs/SimdX86GlobalAlignmentX128_8_undef.hpp libmaus2/lcs/SimdX86GlobalAlignmentY256_16_def.hpp libmaus2/lcs/SimdX86GlobalAlignmentY256_16.hpp libmaus2/lcs/SimdX86GlobalAlignmentY256_16_undef.hpp libmaus2/lcs/SimdX86GlobalAlignmentY256_8_def.hpp libmaus2/lcs/SimdX86GlobalAlignmentY256_8.hpp libmaus2/lcs/SimdX86GlobalAlignmentY256_8_undef.hpp libmaus2/lcs/Aligner.hpp libmaus2/lcs/AlignerFactory.hpp libmaus2/lcs/SimdX86BandedGlobalAlignmentTemplate.hpp libmaus2/lcs/SimdX86BandedGlobalAlignmentX128_16_def.hpp libmaus2/lcs/SimdX86BandedGlobalAlignmentX128_16.hpp libmaus2/lcs/SimdX86BandedGlobalAlignmentX128_16_undef.hpp libmaus2/lcs/SimdX86BandedGlobalAlignmentX128_8_def.hpp libmaus2/lcs/SimdX86BandedGlobalAlignmentX128_8.hpp libmaus2/lcs/SimdX86BandedGlobalAlignmentX128_8_undef.hpp libmaus2/lcs/SimdX86BandedGlobalAlignmentY256_16_def.hpp libmaus2/lcs/SimdX86BandedGlobalAlignmentY256_16.hpp libmaus2/lcs/SimdX86BandedGlobalAlignmentY256_16_undef.hpp libmaus2/lcs/SimdX86BandedGlobalAlignmentY256_8_def.hpp libmaus2/lcs/SimdX86BandedGlobalAlignmentY256_8.hpp libmaus2/lcs/SimdX86BandedGlobalAlignmentY256_8_undef.hpp libmaus2/lcs/BandedAligner.hpp libmaus2/lcs/BandedAlignerFactory.hpp libmaus2/lcs/NP.hpp libmaus2/lcs/NPL.hpp libmaus2/lcs/NPLSelf.hpp libmaus2/lcs/NNP.hpp libmaus2/lcs/NNPCor.hpp libmaus2/lcs/NNPTraceElement.hpp libmaus2/lcs/NNPTraceContainer.hpp libmaus2/lcs/NNPAlignResult.hpp libmaus2/lcs/ScoreBandedAligner.hpp libmaus2/lcs/SimdX86BandedGlobalAlignmentScoreTemplate.hpp libmaus2/lcs/SimdX86BandedGlobalAlignmentScoreY256_16.hpp libmaus2/lcs/SimdX86BandedGlobalAlignmentScoreY256_16_def.hpp libmaus2/lcs/SimdX86BandedGlobalAlignmentScoreY256_16_undef.hpp libmaus2/lcs/SimdX86GlobalAlignmentScoreConstants256.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/lcs' /usr/bin/install -c -m 644 libmaus2/lcs/NNPLocalAligner.hpp libmaus2/lcs/NNPCorLocalAligner.hpp libmaus2/lcs/ChainAddQueueElementHeapComparator.hpp libmaus2/lcs/ChainNode.hpp libmaus2/lcs/ChainRemoveQueueElement.hpp libmaus2/lcs/ChainAddQueueElement.hpp libmaus2/lcs/ChainNodeInfo.hpp libmaus2/lcs/ChainSplayTreeNodeComparator.hpp libmaus2/lcs/ChainAlignment.hpp libmaus2/lcs/ChainNodeInfoSet.hpp libmaus2/lcs/ChainSplayTreeNode.hpp libmaus2/lcs/Chain.hpp libmaus2/lcs/ChainRemoveQueueElementComparator.hpp libmaus2/lcs/ChainLeftMostComparator.hpp libmaus2/lcs/SMEMProcessor.hpp libmaus2/lcs/AlignmentOneAgainstManyAVX2.hpp libmaus2/lcs/AlignmentOneAgainstManyInterface.hpp libmaus2/lcs/AlignmentOneAgainstManyGeneric.hpp libmaus2/lcs/AlignmentOneAgainstManyFactory.hpp libmaus2/lcs/NNPCorL.hpp libmaus2/lcs/NPLinMem.hpp libmaus2/lcs/NPNoTrace.hpp libmaus2/lcs/NPLNoTrace.hpp libmaus2/lcs/NPLLinMem.hpp libmaus2/lcs/CheckSelf.hpp libmaus2/lcs/PosMapping.hpp libmaus2/lcs/TwoSidedNPL.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/lcs' /usr/bin/mkdir -p '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/lf' /usr/bin/install -c -m 644 libmaus2/lf/LF.hpp libmaus2/lf/HuffmanLF.hpp libmaus2/lf/LFZero.hpp libmaus2/lf/DArray.hpp libmaus2/lf/ImpCompactHuffmanWaveletLF.hpp libmaus2/lf/LFBase.hpp libmaus2/lf/QuickLF.hpp libmaus2/lf/MultiRankLF.hpp libmaus2/lf/MultiRankCacheLF.hpp libmaus2/lf/ImpCacheLineRankLF.hpp libmaus2/lf/ImpCacheLineRankLFNonZero.hpp libmaus2/lf/ImpHuffmanWaveletLF.hpp libmaus2/lf/ImpWTLF.hpp libmaus2/lf/RLIndexLF.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/lf' /usr/bin/mkdir -p '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/lru' /usr/bin/install -c -m 644 libmaus2/lru/LRU.hpp libmaus2/lru/SparseLRU.hpp libmaus2/lru/SparseLRUFileBunch.hpp libmaus2/lru/FileBunchLRU.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/lru' /usr/bin/mkdir -p '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/lz/' /usr/bin/install -c -m 644 libmaus2/lz/Inflate.hpp libmaus2/lz/GzipHeader.hpp libmaus2/lz/StreamWrapper.hpp libmaus2/lz/GzipSingleStream.hpp libmaus2/lz/GzipStream.hpp libmaus2/lz/GzipStreamWrapper.hpp libmaus2/lz/BufferedGzipStream.hpp libmaus2/lz/StdOstreamSink.hpp libmaus2/lz/IstreamSource.hpp libmaus2/lz/SnappyCompress.hpp libmaus2/lz/BgzfInflate.hpp libmaus2/lz/BgzfInflateWrapper.hpp libmaus2/lz/BgzfInflateStream.hpp libmaus2/lz/BgzfDeflate.hpp libmaus2/lz/BgzfInflateBase.hpp libmaus2/lz/BgzfInflateBlock.hpp libmaus2/lz/BgzfInflateParallel.hpp libmaus2/lz/BgzfInflateParallelWrapper.hpp libmaus2/lz/BgzfInflateParallelStream.hpp libmaus2/lz/BgzfDeflateBase.hpp libmaus2/lz/BgzfInflateBlockIdComparator.hpp libmaus2/lz/BgzfInflateBlockIdInfo.hpp libmaus2/lz/BgzfInflateParallelContext.hpp libmaus2/lz/BgzfInflateParallelThread.hpp libmaus2/lz/BgzfDeflateBlockIdInfo.hpp libmaus2/lz/BgzfDeflateBlockIdComparator.hpp libmaus2/lz/BgzfDeflateParallelContext.hpp libmaus2/lz/BgzfDeflateParallelThread.hpp libmaus2/lz/BgzfConstants.hpp libmaus2/lz/BgzfDeflateHeaderFunctions.hpp libmaus2/lz/BgzfDeflateInputBufferBase.hpp libmaus2/lz/BgzfDeflateOutputBufferBase.hpp libmaus2/lz/BgzfDeflateZStreamBase.hpp libmaus2/lz/BgzfInflateHeaderBase.hpp libmaus2/lz/BgzfInflateZStreamBase.hpp libmaus2/lz/BgzfRecode.hpp libmaus2/lz/BgzfThreadOpBase.hpp libmaus2/lz/BgzfInflateDeflateParallel.hpp libmaus2/lz/BgzfInflateDeflateParallelThread.hpp libmaus2/lz/BgzfDeflateParallel.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/lz/' /usr/bin/install -c -m 644 libmaus2/lz/BgzfVirtualOffset.hpp libmaus2/lz/BgzfInflateDeflateParallelWrapper.hpp libmaus2/lz/BgzfInflateDeflateParallelInputStream.hpp libmaus2/lz/BgzfDeflateOutputCallback.hpp libmaus2/lz/BgzfDeflateOutputCallbackMD5.hpp libmaus2/lz/BgzfParallelRecodeDeflateBase.hpp libmaus2/lz/BgzfRecodeParallel.hpp libmaus2/lz/BgzfDeflateZStreamBaseFlushInfo.hpp libmaus2/lz/BgzfChunkInputStreamBuffer.hpp libmaus2/lz/BgzfChunkInputStream.hpp libmaus2/lz/Lz4Base.hpp libmaus2/lz/Lz4CompressStreamBuffer.hpp libmaus2/lz/Lz4CompressWrapper.hpp libmaus2/lz/Lz4Decoder.hpp libmaus2/lz/Lz4Index.hpp libmaus2/lz/Lz4Compress.hpp libmaus2/lz/Lz4CompressStream.hpp libmaus2/lz/Lz4DecoderBuffer.hpp libmaus2/lz/GzipOutputStreamBuffer.hpp libmaus2/lz/GzipOutputStream.hpp libmaus2/lz/BgzfInflateInfo.hpp libmaus2/lz/BgzfStreamWrapper.hpp libmaus2/lz/CompressorObject.hpp libmaus2/lz/CompressorObjectFactory.hpp libmaus2/lz/SimpleCompressedOutputStream.hpp libmaus2/lz/SnappyCompressorObject.hpp libmaus2/lz/SnappyCompressorObjectFactory.hpp libmaus2/lz/DecompressorObject.hpp libmaus2/lz/DecompressorObjectFactory.hpp libmaus2/lz/SnappyDecompressorObject.hpp libmaus2/lz/SnappyDecompressorObjectFactory.hpp libmaus2/lz/SimpleCompressedInputStream.hpp libmaus2/lz/SimpleCompressedConcatInputStreamFragment.hpp libmaus2/lz/SimpleCompressedConcatInputStream.hpp libmaus2/lz/SnappyInputStreamArrayFile.hpp libmaus2/lz/SnappyInputStreamArray.hpp libmaus2/lz/SnappyStringInputStream.hpp libmaus2/lz/SnappyOffsetFileInputStream.hpp libmaus2/lz/SnappyFileInputStream.hpp libmaus2/lz/SnappyInputStream.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/lz/' /usr/bin/install -c -m 644 libmaus2/lz/SnappyFileOutputStream.hpp libmaus2/lz/SnappyOutputStream.hpp libmaus2/lz/SimpleCompressedStreamInterval.hpp libmaus2/lz/ZlibCompressorObjectFactory.hpp libmaus2/lz/ZlibDecompressorObjectFactory.hpp libmaus2/lz/ZlibCompressorObject.hpp libmaus2/lz/ZlibDecompressorObject.hpp libmaus2/lz/SimpleCompressedStreamNamedInterval.hpp libmaus2/lz/SimpleCompressedInputBlock.hpp libmaus2/lz/SimpleCompressedInputBlockConcat.hpp libmaus2/lz/SimpleCompressedInputBlockConcatBlock.hpp libmaus2/lz/IsGzip.hpp libmaus2/lz/BufferedGzipStreamWrapper.hpp libmaus2/lz/StreamWrapperBuffer.hpp libmaus2/lz/BufferedGzipStreamBuffer.hpp libmaus2/lz/PlainOrGzipStreamBufferWrapper.hpp libmaus2/lz/PlainOrGzipStream.hpp libmaus2/lz/LineSplittingGzipOutputStreamBuffer.hpp libmaus2/lz/LineSplittingGzipOutputStream.hpp libmaus2/lz/CompressorObjectFreeListAllocator.hpp libmaus2/lz/SnappyCompressorObjectFreeListAllocator.hpp libmaus2/lz/SnappyCompressorObjectFactoryWrapper.hpp libmaus2/lz/ZlibCompressorObjectFactoryWrapper.hpp libmaus2/lz/ZlibCompressorObjectFreeListAllocator.hpp libmaus2/lz/CompressorObjectFreeListAllocatorFactory.hpp libmaus2/lz/BgzfDeflateOutputBufferBaseTypeInfo.hpp libmaus2/lz/BgzfDeflateOutputBufferBaseAllocator.hpp libmaus2/lz/BgzfDeflateZStreamBaseAllocator.hpp libmaus2/lz/BgzfDeflateZStreamBaseTypeInfo.hpp libmaus2/lz/BgzfInflateZStreamBaseAllocator.hpp libmaus2/lz/BgzfInflateZStreamBaseTypeInfo.hpp libmaus2/lz/XzDecoder.hpp libmaus2/lz/XzInputStreamBuffer.hpp libmaus2/lz/XzInputStream.hpp libmaus2/lz/ZlibInterface.hpp libmaus2/lz/BgzfInflateFile.hpp libmaus2/lz/BgzfInflateBaseTypeInfo.hpp libmaus2/lz/BgzfInflateBaseAllocator.hpp libmaus2/lz/BgzfInflateReadPackageDispatcher.hpp libmaus2/lz/BgzfInflateDecompressPackageDispatcher.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/lz/' /usr/bin/install -c -m 644 libmaus2/lz/BgzfInputContext.hpp libmaus2/lz/BgzfInflateThreadPoolReader.hpp libmaus2/lz/DeflateDefaults.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/lz/' /usr/bin/mkdir -p '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/math' /usr/bin/install -c -m 644 libmaus2/math/isqrt.hpp libmaus2/math/bitsPerNum.hpp libmaus2/math/MetaLog.hpp libmaus2/math/lowbits.hpp libmaus2/math/numbits.hpp libmaus2/math/gcd.hpp libmaus2/math/binom.hpp libmaus2/math/primes16.hpp libmaus2/math/ilog.hpp libmaus2/math/DoubleCode.hpp libmaus2/math/iabs.hpp libmaus2/math/IPower.hpp libmaus2/math/Log.hpp libmaus2/math/ipow.hpp libmaus2/math/IntegerInterval.hpp libmaus2/math/DecimalNumberParser.hpp libmaus2/math/UnsignedInteger.hpp libmaus2/math/Rational.hpp libmaus2/math/BernoulliNumber.hpp libmaus2/math/Faulhaber.hpp libmaus2/math/RepetetiveKmerFreqEstimate.hpp libmaus2/math/GmpInteger.hpp libmaus2/math/GmpFloat.hpp libmaus2/math/Convolution.hpp libmaus2/math/GeneralisedBernoulli.hpp libmaus2/math/GeneralisedClusterBernoulli.hpp libmaus2/math/ClusteredBernoulli.hpp libmaus2/math/RationalPolynomialSupport.hpp libmaus2/math/ConstantSumCombinatorics.hpp libmaus2/math/LGammaCache.hpp libmaus2/math/Bernoulli.hpp libmaus2/math/NormalDistribution.hpp libmaus2/math/LogNormalDistribution.hpp libmaus2/math/Distribution.hpp libmaus2/math/HistogramBuckets.hpp libmaus2/math/Matrix.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/math' /usr/bin/mkdir -p '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/network' /usr/bin/install -c -m 644 libmaus2/network/GetHostName.hpp libmaus2/network/UrlBase.hpp libmaus2/network/FileUrl.hpp libmaus2/network/UrlInputStreamBufferWrapper.hpp libmaus2/network/UrlInputStream.hpp libmaus2/network/UrlInputStreamFactory.hpp libmaus2/network/CurlInitObject.hpp libmaus2/network/CurlOutputBlock.hpp libmaus2/network/CurlResponseAcceptor.hpp libmaus2/network/HttpCurlResponseAcceptor.hpp libmaus2/network/FtpCurlResponseAcceptor.hpp libmaus2/network/CurlObject.hpp libmaus2/network/CurlObjectReader.hpp libmaus2/network/CurlObjectThreadCallable.hpp libmaus2/network/CurlInputStreamBuffer.hpp libmaus2/network/CurlInputStream.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/network' /usr/bin/mkdir -p '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/parallel' /usr/bin/install -c -m 644 libmaus2/parallel/AtomicQueue.hpp libmaus2/parallel/AtomicStack.hpp libmaus2/parallel/AtomicPtrQueue.hpp libmaus2/parallel/AtomicPtrStack.hpp libmaus2/parallel/AtomicPtrHeap.hpp libmaus2/parallel/StdThread.hpp libmaus2/parallel/StdMutex.hpp libmaus2/parallel/StdSpinLock.hpp libmaus2/parallel/StdBasicSpinLock.hpp libmaus2/parallel/StdSemaphore.hpp libmaus2/parallel/StdTerminatableSynchronousHeap.hpp libmaus2/parallel/StdSynchronousHeap.hpp libmaus2/parallel/StdSynchronousQueue.hpp libmaus2/parallel/StdSynchronousConditionQueue.hpp libmaus2/parallel/StdTerminatableSynchronousQueue.hpp libmaus2/parallel/SynchronousCounter.hpp libmaus2/parallel/OMPNumThreadsScope.hpp libmaus2/parallel/LockedBool.hpp libmaus2/parallel/SimpleThreadPool.hpp libmaus2/parallel/SimpleThreadPoolInterfaceEnqueTermInterface.hpp libmaus2/parallel/SimpleThreadPoolInterface.hpp libmaus2/parallel/SimpleThreadPoolThread.hpp libmaus2/parallel/SimpleThreadPoolWorkPackageFreeList.hpp libmaus2/parallel/SimpleThreadWorkPackageComparator.hpp libmaus2/parallel/SimpleThreadWorkPackageDispatcher.hpp libmaus2/parallel/SimpleThreadWorkPackage.hpp libmaus2/parallel/LockedQueue.hpp libmaus2/parallel/NumCpus.hpp libmaus2/parallel/LockedFreeList.hpp libmaus2/parallel/LockedHeap.hpp libmaus2/parallel/LockedCounter.hpp libmaus2/parallel/LockedGrowingFreeList.hpp libmaus2/parallel/SimpleThreadPoolThreadId.hpp libmaus2/parallel/SimpleThreadPoolBase.hpp libmaus2/parallel/SimpleThreadPoolThreadIdNode.hpp libmaus2/parallel/SimpleThreadPoolThreadIdTree.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/parallel' /usr/bin/mkdir -p '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/parallel/threadpool' /usr/bin/install -c -m 644 libmaus2/parallel/threadpool/ThreadPool.hpp libmaus2/parallel/threadpool/LockedMap.hpp libmaus2/parallel/threadpool/ThreadWorkPackageData.hpp libmaus2/parallel/threadpool/ThreadWorkPackage.hpp libmaus2/parallel/threadpool/ThreadPoolDispatcher.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/parallel/threadpool' /usr/bin/mkdir -p '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/parallel/threadpool/bam' /usr/bin/install -c -m 644 libmaus2/parallel/threadpool/bam/BamParsePackageDataHandler.hpp libmaus2/parallel/threadpool/bam/BamParsePackageData.hpp libmaus2/parallel/threadpool/bam/BamParseContext.hpp libmaus2/parallel/threadpool/bam/ThreadPoolBamParseHandler.hpp libmaus2/parallel/threadpool/bam/BamParsePackageDataDispatcher.hpp libmaus2/parallel/threadpool/bam/ThreadPoolBamParseControl.hpp libmaus2/parallel/threadpool/bam/ThreadPoolBamParseTrivialReturnHandler.hpp libmaus2/parallel/threadpool/bam/BamHeaderSeqData.hpp libmaus2/parallel/threadpool/bam/BamParseOutputQueue.hpp libmaus2/parallel/threadpool/bam/BamParseHeaderData.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/parallel/threadpool/bam' /usr/bin/mkdir -p '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/parallel/threadpool/bgzf' /usr/bin/install -c -m 644 libmaus2/parallel/threadpool/bgzf/BgzfBlockSummary.hpp libmaus2/parallel/threadpool/bgzf/BgzfBlockInfo.hpp libmaus2/parallel/threadpool/bgzf/BgzfBlockInfoHandlerInterface.hpp libmaus2/parallel/threadpool/bgzf/ReadInfo.hpp libmaus2/parallel/threadpool/bgzf/BgzfInputThreadControl.hpp libmaus2/parallel/threadpool/bgzf/BgzfHeaderDecoderBase.hpp libmaus2/parallel/threadpool/bgzf/BgzfHeaderDecoder.hpp libmaus2/parallel/threadpool/bgzf/BgzfInputReadInterface.hpp libmaus2/parallel/threadpool/bgzf/ThreadPoolBGZFReadControl.hpp libmaus2/parallel/threadpool/bgzf/BgzfBlockInfoTrivialReturnHandler.hpp libmaus2/parallel/threadpool/bgzf/GenericBlock.hpp libmaus2/parallel/threadpool/bgzf/BgzfDataDecompressedInterface.hpp libmaus2/parallel/threadpool/bgzf/BgzfDecompressPackageData.hpp libmaus2/parallel/threadpool/bgzf/BgzfDecompressContext.hpp libmaus2/parallel/threadpool/bgzf/BgzfDecompressedBlock.hpp libmaus2/parallel/threadpool/bgzf/BgzfBlockInfoEnqueDecompressHandler.hpp libmaus2/parallel/threadpool/bgzf/BgzfDecompressPackageDataDispatcher.hpp libmaus2/parallel/threadpool/bgzf/ThreadPoolBGZFDecompressControl.hpp libmaus2/parallel/threadpool/bgzf/BgzfDataDecompressedTrivialReturnInterface.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/parallel/threadpool/bgzf' /usr/bin/mkdir -p '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/parallel/threadpool/cram' /usr/bin/install -c -m 644 libmaus2/parallel/threadpool/cram/CramEnqueuePackageDataHandler.hpp libmaus2/parallel/threadpool/cram/CramEnqueuePackageData.hpp libmaus2/parallel/threadpool/cram/CramEnqueuePackageDataDispatcher.hpp libmaus2/parallel/threadpool/cram/CramEncodingWorkPackageData.hpp libmaus2/parallel/threadpool/cram/CramEncodingWorkPackageDispatcher.hpp libmaus2/parallel/threadpool/cram/ThreadPoolCramEnqueueControl.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/parallel/threadpool/cram' /usr/bin/mkdir -p '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/parallel/threadpool/input' /usr/bin/install -c -m 644 libmaus2/parallel/threadpool/input/ThreadPoolInputBlock.hpp libmaus2/parallel/threadpool/input/ThreadPoolInputInfo.hpp libmaus2/parallel/threadpool/input/InputThreadCallbackInterface.hpp libmaus2/parallel/threadpool/input/InputThreadPackageData.hpp libmaus2/parallel/threadpool/input/InputThreadPackageDispatcher.hpp libmaus2/parallel/threadpool/input/InputThreadControl.hpp libmaus2/parallel/threadpool/input/InputThreadTrivialReturnInterface.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/parallel/threadpool/input' /usr/bin/mkdir -p '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/posix' /usr/bin/install -c -m 644 libmaus2/posix/PosixFunctions.hpp libmaus2/posix/PosixExecute.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/posix' /usr/bin/mkdir -p '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/protein/' /usr/bin/install -c -m 644 libmaus2/protein/Align.hpp libmaus2/protein/AlignGlobal.hpp libmaus2/protein/Blosum62.hpp libmaus2/protein/CodonMapper.hpp libmaus2/protein/ProteinAlignment.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/protein/' /usr/bin/mkdir -p '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/quantisation/' /usr/bin/install -c -m 644 libmaus2/quantisation/Quantiser.hpp libmaus2/quantisation/ClusterComputation.hpp libmaus2/quantisation/KmeansDataType.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/quantisation/' /usr/bin/mkdir -p '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/random' /usr/bin/install -c -m 644 libmaus2/random/Random.hpp libmaus2/random/UniformUnitRandom.hpp libmaus2/random/GaussianRandom.hpp libmaus2/random/DNABaseNoiseSpiker.hpp libmaus2/random/Poisson.hpp libmaus2/random/LogNormalRandom.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/random' /usr/bin/mkdir -p '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/rank' /usr/bin/install -c -m 644 libmaus2/rank/ChooseCache.hpp libmaus2/rank/CodeBase.hpp libmaus2/rank/DecodeCache.hpp libmaus2/rank/ERank222BAppend.hpp libmaus2/rank/ERank222B.hpp libmaus2/rank/ERank222BP.hpp libmaus2/rank/ERank222.hpp libmaus2/rank/ERank22B.hpp libmaus2/rank/ERank22.hpp libmaus2/rank/ERank2.hpp libmaus2/rank/ERank3C.hpp libmaus2/rank/ERank3.hpp libmaus2/rank/ERankBase.hpp libmaus2/rank/ERank.hpp libmaus2/rank/log2table.hpp libmaus2/rank/popcnt.hpp libmaus2/rank/RankTable.hpp libmaus2/rank/Proc01.hpp libmaus2/rank/EncodeCache.hpp libmaus2/rank/CacheLineRank.hpp libmaus2/rank/ImpCacheLineRank.hpp libmaus2/rank/ERank222BBase.hpp libmaus2/rank/ERank222BAppendDynamic.hpp libmaus2/rank/RunLengthBitVectorBase.hpp libmaus2/rank/RunLengthBitVector.hpp libmaus2/rank/RunLengthBitVectorGenerator.hpp libmaus2/rank/RunLengthBitVectorStream.hpp libmaus2/rank/RunLengthBitVectorGeneratorBase.hpp libmaus2/rank/RunLengthBitVectorGeneratorGammaBase.hpp libmaus2/rank/FastRank.hpp libmaus2/rank/BSwapBase.hpp libmaus2/rank/DNARank.hpp libmaus2/rank/DNARankKmerCache.hpp libmaus2/rank/DNARankBiDir.hpp libmaus2/rank/DNARankBiDirRange.hpp libmaus2/rank/DNARankMEM.hpp libmaus2/rank/DNARankMEMPosComparator.hpp libmaus2/rank/DNARankSMEMContext.hpp libmaus2/rank/DNARankSMEMComputation.hpp libmaus2/rank/DNARankGetPosition.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/rank' /usr/bin/install -c -m 644 libmaus2/rank/DNARankBiDirRangeSizeComparator.hpp libmaus2/rank/DNARankSuffixTreeNodeEnumeratorQueueElement.hpp libmaus2/rank/DNARankSuffixTreeNodeEnumerator.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/rank' /usr/bin/mkdir -p '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/rl' /usr/bin/install -c -m 644 libmaus2/rl/RLIndex.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/rl' /usr/bin/mkdir -p '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/rmq' /usr/bin/install -c -m 644 libmaus2/rmq/QuickDynamicRMQ.hpp libmaus2/rmq/CartesianTree.hpp libmaus2/rmq/RMMTree.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/rmq' /usr/bin/mkdir -p '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/select' /usr/bin/install -c -m 644 libmaus2/select/ESelect222B.hpp libmaus2/select/ESelectBase.hpp libmaus2/select/ESelectSimple.hpp libmaus2/select/ImpCacheLineSelectSupport.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/select' /usr/bin/mkdir -p '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/serialize/' /usr/bin/install -c -m 644 libmaus2/serialize/Serialize.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/serialize/' /usr/bin/mkdir -p '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/sorting' /usr/bin/install -c -m 644 libmaus2/sorting/sorting.hpp libmaus2/sorting/ParallelRadixSort.hpp libmaus2/sorting/SerialRadixSort64.hpp libmaus2/sorting/PairFileSorting.hpp libmaus2/sorting/InPlaceParallelSort.hpp libmaus2/sorting/MergingReadBack.hpp libmaus2/sorting/SortingBufferedOutputFile.hpp libmaus2/sorting/MergeStepBinSearchResult.hpp libmaus2/sorting/ParallelStableSort.hpp libmaus2/sorting/SemiExternalKeyTupleSort.hpp libmaus2/sorting/InterleavedRadixSort.hpp libmaus2/sorting/ParallelRunLengthRadixUnsort.hpp libmaus2/sorting/ParallelRunLengthRadixSort.hpp libmaus2/sorting/ParallelExternalRadixSort.hpp libmaus2/sorting/RankSearch.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/sorting' /usr/bin/mkdir -p '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/stacktrace' /usr/bin/install -c -m 644 libmaus2/stacktrace/StackTrace.hpp libmaus2/stacktrace/StackTraceBufferContainer.hpp libmaus2/stacktrace/StackLineTranslator.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/stacktrace' /usr/bin/mkdir -p '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/suffixsort' /usr/bin/install -c -m 644 libmaus2/suffixsort/SkewSuffixSort.hpp libmaus2/suffixsort/divsufsort.hpp libmaus2/suffixsort/CircularBwt.hpp libmaus2/suffixsort/CircularSuffixComparator.hpp libmaus2/suffixsort/BwtMergeTempFileNameSet.hpp libmaus2/suffixsort/BwtMergeZBlock.hpp libmaus2/suffixsort/BwtMergeTempFileNameSetVector.hpp libmaus2/suffixsort/BwtMergeBlockSortResult.hpp libmaus2/suffixsort/BwtMergeZBlockRequest.hpp libmaus2/suffixsort/BwtMergeZBlockRequestVector.hpp libmaus2/suffixsort/GapMergePacket.hpp libmaus2/suffixsort/BwtMergeEnumBase.hpp libmaus2/suffixsort/ByteInputTypes.hpp libmaus2/suffixsort/CompactInputTypes.hpp libmaus2/suffixsort/PacInputTypes.hpp libmaus2/suffixsort/PacTermInputTypes.hpp libmaus2/suffixsort/Utf8InputTypes.hpp libmaus2/suffixsort/Lz4InputTypes.hpp libmaus2/suffixsort/GapArrayByteDecoderBuffer.hpp libmaus2/suffixsort/GapArrayByte.hpp libmaus2/suffixsort/GapArrayByteDecoder.hpp libmaus2/suffixsort/GapArrayByteOverflowKeyAccessor.hpp libmaus2/suffixsort/BwtMergeBlockSortRequestBase.hpp libmaus2/suffixsort/BwtMergeBlockSortRequest.hpp libmaus2/suffixsort/SmallestRotation.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/suffixsort' /usr/bin/mkdir -p '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/suffixsort/bwtb3m' /usr/bin/install -c -m 644 libmaus2/suffixsort/bwtb3m/MergeStrategyMergeGapRequestQueryObject.hpp libmaus2/suffixsort/bwtb3m/MergeStrategyBlock.hpp libmaus2/suffixsort/bwtb3m/MergeStrategyBaseBlock.hpp libmaus2/suffixsort/bwtb3m/MergeStrategyMergeGapRequest.hpp libmaus2/suffixsort/bwtb3m/MergeStrategyMergeBlock.hpp libmaus2/suffixsort/bwtb3m/MergeStrategyMergeInternalBlock.hpp libmaus2/suffixsort/bwtb3m/MergeStrategyMergeInternalSmallBlock.hpp libmaus2/suffixsort/bwtb3m/MergeStrategyMergeExternalBlock.hpp libmaus2/suffixsort/bwtb3m/MergeStrategyConstruction.hpp libmaus2/suffixsort/bwtb3m/MergeTree.hpp libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp libmaus2/suffixsort/bwtb3m/BaseBlockSortThread.hpp libmaus2/suffixsort/bwtb3m/BaseBlockSorting.hpp libmaus2/suffixsort/bwtb3m/BwtMergeSortOptions.hpp libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.hpp libmaus2/suffixsort/bwtb3m/BwtComputeSSA.hpp libmaus2/suffixsort/bwtb3m/BwtSelectSSA.hpp libmaus2/suffixsort/bwtb3m/MergeStrategyMergeInput.hpp libmaus2/suffixsort/bwtb3m/InputTypesForward.hpp libmaus2/suffixsort/bwtb3m/BwtMergeIsaBase.hpp libmaus2/suffixsort/bwtb3m/PreIsaAdapter.hpp libmaus2/suffixsort/bwtb3m/GapArrayWrapper.hpp libmaus2/suffixsort/bwtb3m/BwtMergeIsaParallelBase.hpp libmaus2/suffixsort/bwtb3m/BwtMergeParallelGapFragMerge.hpp libmaus2/suffixsort/bwtb3m/BwtMergeComputeSampledSA.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/suffixsort/bwtb3m' /usr/bin/mkdir -p '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/suffixtree' /usr/bin/install -c -m 644 libmaus2/suffixtree/CompressedSuffixTree.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/suffixtree' /usr/bin/mkdir -p '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/sv' /usr/bin/install -c -m 644 libmaus2/sv/sv.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/sv' /usr/bin/mkdir -p '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/timing' /usr/bin/install -c -m 644 libmaus2/timing/RealTimeClock.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/timing' /usr/bin/mkdir -p '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/trie' /usr/bin/install -c -m 644 libmaus2/trie/TrieState.hpp libmaus2/trie/SimpleTrie.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/trie' /usr/bin/mkdir -p '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/types/' /usr/bin/install -c -m 644 libmaus2/types/types.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/types/' /usr/bin/mkdir -p '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/uint' /usr/bin/install -c -m 644 libmaus2/uint/uint.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/uint' /usr/bin/mkdir -p '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/util' /usr/bin/install -c -m 644 libmaus2/util/TabEntry.hpp libmaus2/util/stringFunctions.hpp libmaus2/util/BitList.hpp libmaus2/util/VarBitList.hpp libmaus2/util/VarList.hpp libmaus2/util/IntervalTree.hpp libmaus2/util/LookupIntervalTree.hpp libmaus2/util/StringSerialisation.hpp libmaus2/util/NumberSerialisation.hpp libmaus2/util/GetFileSize.hpp libmaus2/util/TempFileNameGenerator.hpp libmaus2/util/TempFileNameGeneratorState.hpp libmaus2/util/BitsPerNum.hpp libmaus2/util/ArgInfo.hpp libmaus2/util/Concat.hpp libmaus2/util/ConcatRequest.hpp libmaus2/util/CompactNumberArray.hpp libmaus2/util/ArrayIterator.hpp libmaus2/util/OffsetArray.hpp libmaus2/util/Terminal.hpp libmaus2/util/nstat.hpp libmaus2/util/WriteableString.hpp libmaus2/util/MoveStack.hpp libmaus2/util/LongestIncreasingSubsequence.hpp libmaus2/util/utf8.hpp libmaus2/util/Histogram.hpp libmaus2/util/IncreasingList.hpp libmaus2/util/GenericSerialisation.hpp libmaus2/util/ConsoleColor.hpp libmaus2/util/iterator.hpp libmaus2/util/SaturatingCounter.hpp libmaus2/util/MemUsage.hpp libmaus2/util/unordered_set.hpp libmaus2/util/unordered_map.hpp libmaus2/util/ReverseByteOrder.hpp libmaus2/util/SimpleBloomFilter.hpp libmaus2/util/SimpleCountingHash.hpp libmaus2/util/SimpleHashMap.hpp libmaus2/util/SimpleHashSet.hpp libmaus2/util/OutputFileNameTools.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/util' /usr/bin/install -c -m 644 libmaus2/util/LELoad.hpp libmaus2/util/GetCObject.hpp libmaus2/util/PutObject.hpp libmaus2/util/PutObjectReverse.hpp libmaus2/util/CountPutObject.hpp libmaus2/util/CountPutIterator.hpp libmaus2/util/AlphaDigitTable.hpp libmaus2/util/AlphaTable.hpp libmaus2/util/DigitTable.hpp libmaus2/util/TempFileRemovalContainer.hpp libmaus2/util/DynamicLoading.hpp libmaus2/util/Object.hpp libmaus2/util/KMP.hpp libmaus2/util/NumberMapSerialisation.hpp libmaus2/util/Utf8BlockIndex.hpp libmaus2/util/Utf8DecoderBuffer.hpp libmaus2/util/Utf8String.hpp libmaus2/util/UnsignedCharVariant.hpp libmaus2/util/CountGetObject.hpp libmaus2/util/HistogramSet.hpp libmaus2/util/GenericIntervalTree.hpp libmaus2/util/OctetString.hpp libmaus2/util/Utf8StringPairAdapter.hpp libmaus2/util/Utf8BlockIndexDecoder.hpp libmaus2/util/Utf8DecoderWrapper.hpp libmaus2/util/TempFileContainer.hpp libmaus2/util/FileTempFileContainer.hpp libmaus2/util/MemTempFileContainer.hpp libmaus2/util/ImpCompactNumberArray.hpp libmaus2/util/ContainerGetObject.hpp libmaus2/util/PushBuffer.hpp libmaus2/util/SuccinctBorderArray.hpp libmaus2/util/LineAccessor.hpp libmaus2/util/StringMapCompare.hpp libmaus2/util/FreeList.hpp libmaus2/util/ToUpperTable.hpp libmaus2/util/BorderArray.hpp libmaus2/util/SimpleHashMapConstants.hpp libmaus2/util/SimpleHashMapKeyPrint.hpp libmaus2/util/GrowingFreeList.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/util' /usr/bin/install -c -m 644 libmaus2/util/SimpleHashMapHashCompute.hpp libmaus2/util/SimpleHashMapInsDel.hpp libmaus2/util/SimpleHashMapNumberCast.hpp libmaus2/util/SimpleHashSetInsDel.hpp libmaus2/util/LineBuffer.hpp libmaus2/util/UnsignedIntegerIndexIterator.hpp libmaus2/util/FiniteSizeHeap.hpp libmaus2/util/UnitNum.hpp libmaus2/util/NotDigitOrTermTable.hpp libmaus2/util/ArgInfoParseBase.hpp libmaus2/util/ReverseAdapter.hpp libmaus2/util/MemoryStatistics.hpp libmaus2/util/LongestIncreasingSubsequenceExtendedResult.hpp libmaus2/util/ArgParser.hpp libmaus2/util/PrefixSums.hpp libmaus2/util/NumberToString.hpp libmaus2/util/SplayTree.hpp libmaus2/util/Queue.hpp libmaus2/util/ContainerElementFreeList.hpp libmaus2/util/StringAllocTypes.hpp libmaus2/util/SimpleQueue.hpp libmaus2/util/SimpleHashMapDisplaceMaskFunction.hpp libmaus2/util/Enumerator.hpp libmaus2/util/LocalTempContainer.hpp libmaus2/util/ContainerDescription.hpp libmaus2/util/ContainerDescriptionList.hpp libmaus2/util/U.hpp libmaus2/util/AutoArrayCharBaseTypeInfo.hpp libmaus2/util/AutoArrayCharBaseAllocator.hpp libmaus2/util/FileEnumerator.hpp libmaus2/util/PathTools.hpp libmaus2/util/Base64.hpp libmaus2/util/AutoArrayUInt8TBaseAllocator.hpp libmaus2/util/AutoArrayUInt8TBaseTypeInfo.hpp libmaus2/util/DirectoryStructure.hpp libmaus2/util/StreamGetObject.hpp libmaus2/util/SerialiseHelper.hpp libmaus2/util/atomic_shared_ptr.hpp libmaus2/util/AtomicArray.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/util' /usr/bin/mkdir -p '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/vcf' /usr/bin/install -c -m 644 libmaus2/vcf/VCFParser.hpp libmaus2/vcf/VCFSortEntry.hpp libmaus2/vcf/VCFSorter.hpp libmaus2/vcf/TabixIndex.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/vcf' /usr/bin/mkdir -p '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/vep' /usr/bin/install -c -m 644 libmaus2/vep/VEPCoordinate.hpp libmaus2/vep/VEPParser.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/vep' /usr/bin/mkdir -p '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/wavelet' /usr/bin/install -c -m 644 libmaus2/wavelet/toWaveletTreeBits.hpp libmaus2/wavelet/WaveletTree.hpp libmaus2/wavelet/HuffmanWaveletTree.hpp libmaus2/wavelet/DynamicHuffmanWaveletTree.hpp libmaus2/wavelet/DynamicWaveletTree.hpp libmaus2/wavelet/ExternalWaveletGenerator.hpp libmaus2/wavelet/ImpWaveletTree.hpp libmaus2/wavelet/ImpExternalWaveletGenerator.hpp libmaus2/wavelet/ImpExternalWaveletGeneratorHuffmanParallel.hpp libmaus2/wavelet/ImpExternalWaveletGeneratorHuffman.hpp libmaus2/wavelet/ImpHuffmanWaveletTree.hpp libmaus2/wavelet/Utf8ToImpHuffmanWaveletTree.hpp libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp libmaus2/wavelet/ImpCompactHuffmanWaveletTree.hpp libmaus2/wavelet/ImpExternalWaveletGeneratorCompactHuffman.hpp libmaus2/wavelet/ImpExternalWaveletGeneratorCompactHuffmanParallel.hpp libmaus2/wavelet/RlToHwtBase.hpp libmaus2/wavelet/RlToHwtTermRequest.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/wavelet' make[3]: Leaving directory '/build/reproducible-path/libmaus2-2.0.813+ds/src' make[2]: Leaving directory '/build/reproducible-path/libmaus2-2.0.813+ds/src' make[2]: Entering directory '/build/reproducible-path/libmaus2-2.0.813+ds' make[3]: Entering directory '/build/reproducible-path/libmaus2-2.0.813+ds' make[3]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/share/doc/libmaus2' /usr/bin/install -c -m 644 ChangeLog '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/share/doc/libmaus2' /usr/bin/mkdir -p '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/arm-linux-gnueabihf/pkgconfig' /usr/bin/install -c -m 644 libmaus2.pc '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/arm-linux-gnueabihf/pkgconfig' make install-data-hook make[4]: Entering directory '/build/reproducible-path/libmaus2-2.0.813+ds' cd /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/share/doc/libmaus2 && mv ChangeLog changelog && gzip -f -n -9 changelog make[4]: Leaving directory '/build/reproducible-path/libmaus2-2.0.813+ds' make[3]: Leaving directory '/build/reproducible-path/libmaus2-2.0.813+ds' make[2]: Leaving directory '/build/reproducible-path/libmaus2-2.0.813+ds' make[1]: Leaving directory '/build/reproducible-path/libmaus2-2.0.813+ds' chmod -R u\+rwX /build/reproducible-path/libmaus2-2.0.813\+ds/debian/tmp debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/libmaus2-2.0.813+ds' dh_install # following override suggestion from suggestion of Andreas to Michael # to overcome d-shlibmove bug on Jan 4, 2019 d-shlibmove --commit \ --multiarch \ --devunversioned \ --exclude-la \ --override s/libdeflate0-dev/libdeflate-dev/ \ --override s/libmaus2_.*-dev/libmaus2-dev/ \ --override 's/libnettle.*-dev/nettle-dev/' \ --override 's/libgpgme.*-dev/libgpgme-dev/' \ --movedev debian/tmp/usr/include/* usr/include \ --movedev "debian/tmp/usr/lib/*/pkgconfig/*.pc" \ usr/lib/arm-linux-gnueabihf/pkgconfig \ debian/tmp/usr/lib/*/*.so Library package automatic movement utility make[1]: *** [debian/rules:30: override_dh_install] Error 1 make[1]: Leaving directory '/build/reproducible-path/libmaus2-2.0.813+ds' make: *** [debian/rules:16: binary-arch] Error 2 dpkg-buildpackage: error: debian/rules binary-arch subprocess failed with exit status 2 -------------------------------------------------------------------------------- Build finished at 2026-09-10T11:57:18Z +------------------------------------------------------------------------------+ | Finished Timed Build Commands Thu, 10 Sep 2026 11:57:18 +0000 | +------------------------------------------------------------------------------+ rm -Rf /build/reproducible-path/libmaus2-2.0.813+ds/ ---------------------------------------------------- I: Finished running 'rm -Rf /build/reproducible-path/libmaus2-2.0.813+ds/'. Finished processing commands. -------------------------------------------------------------------------------- Finished -------- +------------------------------------------------------------------------------+ | Cleanup Thu, 10 Sep 2026 11:57:19 +0000 | +------------------------------------------------------------------------------+ Purging /build/reproducible-path Not cleaning session: cloned chroot in use E: Build failure (dpkg-buildpackage died with exit 2) +------------------------------------------------------------------------------+ | Summary Thu, 10 Sep 2026 11:57:20 +0000 | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: n/a Build-Time: 4917 Distribution: unstable Fail-Stage: build Foreign Architectures: armhf Host Architecture: armhf Install-Time: 18 Job: libmaus2_2.0.813+ds-6 Machine Architecture: amd64 Package: libmaus2 Package-Time: 4947 Source-Version: 2.0.813+ds-6 Space: n/a Status: attempted Version: 2.0.813+ds-6 -------------------------------------------------------------------------------- Finished at 2026-09-10T11:57:18Z Build needed 01:22:27, no disk space