sbuild (Debian sbuild) 0.89.3+deb13u4 (28 December 2025) on mjolnir.einval.org +==============================================================================+ | libmaus2 2.0.813+ds-6 (i386) Wed, 09 Sep 2026 06:18:15 +0000 | +==============================================================================+ Package: libmaus2 Version: 2.0.813+ds-6 Source Version: 2.0.813+ds-6 Distribution: unstable Machine Architecture: arm64 Host Architecture: i386 Build Architecture: arm64 Build Profiles: cross nocheck Build Type: any I: Unpacking /home/helmut/.cache/sbuild/unstable-arm64-sbuild.tar.zst to /tmp/tmp.sbuild.6vwDh_egni... I: Setting up the chroot... I: Creating chroot session... I: Setting up log color... I: Setting up apt archive... +------------------------------------------------------------------------------+ | Update chroot Wed, 09 Sep 2026 06:18:38 +0000 | +------------------------------------------------------------------------------+ Get:1 http://mirror.einval.org/debian unstable InRelease [193 kB] Get:2 http://mirror.einval.org/debian unstable/main Sources [11.9 MB] Get:3 http://mirror.einval.org/debian unstable/main arm64 Packages [10.7 MB] Get:4 http://mirror.einval.org/debian unstable/main i386 Packages [10.4 MB] Fetched 33.1 MB in 8s (4226 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: binutils binutils-aarch64-linux-gnu binutils-common dpkg dpkg-dev libbinutils libctf-nobfd0 libctf0 libdpkg-perl libgprofng0 libsframe3 libsystemd0 libudev1 13 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 8957 kB of archives. After this operation, 2015 kB disk space will be freed. Get:1 http://mirror.einval.org/debian unstable/main arm64 dpkg arm64 1.23.10 [1188 kB] Get:2 http://mirror.einval.org/debian unstable/main arm64 libsystemd0 arm64 262~rc2-1 [430 kB] Get:3 http://mirror.einval.org/debian unstable/main arm64 libudev1 arm64 262~rc2-1 [130 kB] Get:4 http://mirror.einval.org/debian unstable/main arm64 libgprofng0 arm64 2.47-4 [684 kB] Get:5 http://mirror.einval.org/debian unstable/main arm64 libctf0 arm64 2.47-4 [86.2 kB] Get:6 http://mirror.einval.org/debian unstable/main arm64 libctf-nobfd0 arm64 2.47-4 [154 kB] Get:7 http://mirror.einval.org/debian unstable/main arm64 binutils-aarch64-linux-gnu arm64 2.47-4 [896 kB] Get:8 http://mirror.einval.org/debian unstable/main arm64 libbinutils arm64 2.47-4 [685 kB] Get:9 http://mirror.einval.org/debian unstable/main arm64 binutils arm64 2.47-4 [281 kB] Get:10 http://mirror.einval.org/debian unstable/main arm64 binutils-common arm64 2.47-4 [2683 kB] Get:11 http://mirror.einval.org/debian unstable/main arm64 libsframe3 arm64 2.47-4 [85.4 kB] Get:12 http://mirror.einval.org/debian unstable/main arm64 dpkg-dev all 1.23.10 [1005 kB] Get:13 http://mirror.einval.org/debian unstable/main arm64 libdpkg-perl all 1.23.10 [649 kB] Fetched 8957 kB in 0s (65.1 MB/s) (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12233 files and directories currently installed.) Preparing to unpack .../libudev1_262~rc2-1_arm64.deb ... Unpacking libudev1:arm64 (262~rc2-1) over (262~rc1-2) ... Setting up libudev1:arm64 (262~rc2-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12233 files and directories currently installed.) Preparing to unpack .../0-libgprofng0_2.47-4_arm64.deb ... Unpacking libgprofng0:arm64 (2.47-4) over (2.47-2) ... Preparing to unpack .../1-libctf0_2.47-4_arm64.deb ... Unpacking libctf0:arm64 (2.47-4) over (2.47-2) ... Preparing to unpack .../2-libctf-nobfd0_2.47-4_arm64.deb ... Unpacking libctf-nobfd0:arm64 (2.47-4) over (2.47-2) ... Preparing to unpack .../3-binutils-aarch64-linux-gnu_2.47-4_arm64.deb ... Unpacking binutils-aarch64-linux-gnu (2.47-4) over (2.47-2) ... Preparing to unpack .../4-libbinutils_2.47-4_arm64.deb ... Unpacking libbinutils:arm64 (2.47-4) over (2.47-2) ... Preparing to unpack .../5-binutils_2.47-4_arm64.deb ... Unpacking binutils (2.47-4) over (2.47-2) ... Preparing to unpack .../6-binutils-common_2.47-4_arm64.deb ... Unpacking binutils-common:arm64 (2.47-4) over (2.47-2) ... Preparing to unpack .../7-libsframe3_2.47-4_arm64.deb ... Unpacking libsframe3:arm64 (2.47-4) over (2.47-2) ... Preparing to unpack .../8-dpkg-dev_1.23.10_all.deb ... Unpacking dpkg-dev (1.23.10) over (1.23.7) ... Preparing to unpack .../9-libdpkg-perl_1.23.10_all.deb ... Unpacking libdpkg-perl (1.23.10) over (1.23.7) ... Setting up binutils-common:arm64 (2.47-4) ... Setting up libsframe3:arm64 (2.47-4) ... Setting up libctf-nobfd0:arm64 (2.47-4) ... Setting up libdpkg-perl (1.23.10) ... Setting up libbinutils:arm64 (2.47-4) ... Setting up libctf0:arm64 (2.47-4) ... Setting up binutils-aarch64-linux-gnu (2.47-4) ... Setting up libgprofng0:arm64 (2.47-4) ... Setting up binutils (2.47-4) ... Setting up dpkg-dev (1.23.10) ... Installing new version of config file /etc/dpkg/shlibs.default ... Installing new version of config file /etc/dpkg/shlibs.override ... Processing triggers for libc-bin (2.43-5) ... +------------------------------------------------------------------------------+ | Fetch source files Wed, 09 Sep 2026 06:19:01 +0000 | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'libmaus2' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/libmaus2.git Please use: git clone https://salsa.debian.org/med-team/libmaus2.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 1669 kB of source archives. Get:1 http://mirror.einval.org/debian unstable/main libmaus2 2.0.813+ds-6 (dsc) [2315 B] Get:2 http://mirror.einval.org/debian unstable/main libmaus2 2.0.813+ds-6 (tar) [1656 kB] Get:3 http://mirror.einval.org/debian unstable/main libmaus2 2.0.813+ds-6 (diff) [10.3 kB] Fetched 1669 kB in 0s (20.9 MB/s) Download complete and in download only mode +------------------------------------------------------------------------------+ | Install package build dependencies Wed, 09 Sep 2026 06:19:03 +0000 | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 14), d-shlibs, libboost-atomic-dev, libsecrecy-dev, pkgconf, zlib1g-dev, libc-dev, libstdc++-dev, build-essential:arm64, crossbuild-essential-i386:arm64, apt-utils:arm64, libc-dev:i386, libstdc++-dev:i386 Filtered Build-Depends: debhelper-compat (= 14), d-shlibs, libboost-atomic-dev, libsecrecy-dev, pkgconf, zlib1g-dev, libc-dev, libstdc++-dev, build-essential:arm64, crossbuild-essential-i386:arm64, apt-utils:arm64, libc-dev:i386, libstdc++-dev:i386 dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/build/reproducible-path/resolver-tupKmj/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/build/reproducible-path/resolver-tupKmj/apt_archive ./ InRelease Get:2 copy:/build/reproducible-path/resolver-tupKmj/apt_archive ./ Release [609 B] Ign:3 copy:/build/reproducible-path/resolver-tupKmj/apt_archive ./ Release.gpg Get:4 copy:/build/reproducible-path/resolver-tupKmj/apt_archive ./ Sources [780 B] Get:5 copy:/build/reproducible-path/resolver-tupKmj/apt_archive ./ Packages [822 B] Fetched 2211 B in 0s (88.7 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Execute external solver... The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-i686-linux-gnu bsdextrautils cpp-16-i686-linux-gnu cpp-i686-linux-gnu crossbuild-essential-i386 d-shlibs debhelper dh-autoreconf dh-strip-nondeterminism dirmngr dwz file g++-16-i686-linux-gnu g++-i686-linux-gnu gcc-16-base:i386 gcc-16-cross-base gcc-16-i686-linux-gnu gcc-16-i686-linux-gnu-base gcc-i686-linux-gnu gettext gettext-base gnupg gnupg-l10n gpg gpg-agent gpgconf gpgsm groff-base intltool-debian libarchive-zip-perl libasan8:i386 libasan8-i386-cross libassuan-dev:i386 libassuan9 libassuan9:i386 libatomic1:i386 libatomic1-i386-cross libboost-atomic-dev:i386 libboost-atomic1.90-dev:i386 libboost-atomic1.90.0:i386 libboost1.90-dev:i386 libc-gconv-modules-extra:i386 libc6:i386 libc6-dev:i386 libc6-dev-i386-cross libc6-i386-cross libdebhelper-perl libelf1t64 libffi8 libfile-stripnondeterminism-perl libgcc-16-dev:i386 libgcc-16-dev-i386-cross libgcc-s1:i386 libgcc-s1-i386-cross libgcrypt20 libgmp-dev:i386 libgmp10:i386 libgmpxx4ldbl:i386 libgnutls30t64 libgomp1:i386 libgomp1-i386-cross libgpg-error-dev:i386 libgpg-error0 libgpg-error0:i386 libgpgme-dev:i386 libgpgme45:i386 libhogweed6t64:i386 libidn2-0 libitm1:i386 libitm1-i386-cross libksba8 libldap2 libmagic-mgc libmagic1t64 libncursesw6 libnettle8t64:i386 libnpth0t64 libp11-kit0 libpipeline1 libpkgconf7 libquadmath0:i386 libquadmath0-i386-cross libreadline8t64 libsasl2-2 libsasl2-modules-db libsecrecy-dev:i386 libsqlite3-0 libstdc++-16-dev:i386 libstdc++-16-dev-i386-cross libstdc++6:i386 libstdc++6-i386-cross libtasn1-6 libtool libubsan1:i386 libubsan1-i386-cross libuchardet0 libunistring5 libxml2-16 linux-libc-dev-i386-cross m4 man-db nettle-dev:i386 pinentry-curses pkgconf:i386 pkgconf-bin po-debconf readline-common sensible-utils zlib1g:i386 zlib1g-dev:i386 Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc gcc-16-locales cpp-16-doc cpp-doc dh-make dbus-user-session libpam-systemd pinentry-gnome3 tor gcc-16-doc manpages-dev flex bison gdb-i686-linux-gnu gcc-doc gettext-doc libasprintf-dev libgettextpo-dev gnulib-l10n gpg-wks-server parcimonie xloadimage scdaemon tpm2daemon groff libboost1.90-doc:i386 libboost-chrono1.90-dev:i386 libboost-container1.90-dev:i386 libboost-context1.90-dev:i386 libboost-contract1.90-dev:i386 libboost-coroutine1.90-dev:i386 libboost-date-time1.90-dev:i386 libboost-exception1.90-dev:i386 libboost-fiber1.90-dev:i386 libboost-filesystem1.90-dev:i386 libboost-graph-parallel1.90-dev:i386 libboost-graph1.90-dev:i386 libboost-iostreams1.90-dev:i386 libboost-json1.90-dev:i386 libboost-locale1.90-dev:i386 libboost-log1.90-dev:i386 libboost-math1.90-dev:i386 libboost-mpi-python1.90-dev:i386 libboost-mpi1.90-dev:i386 libboost-nowide1.90-dev:i386 libboost-numpy1.90-dev:i386 libboost-program-options1.90-dev:i386 libboost-python1.90-dev:i386 libboost-random1.90-dev:i386 libboost-regex1.90-dev:i386 libboost-serialization1.90-dev:i386 libboost-stacktrace1.90-dev:i386 libboost-test1.90-dev:i386 libboost-thread1.90-dev:i386 libboost-timer1.90-dev:i386 libboost-type-erasure1.90-dev:i386 libboost-url1.90-dev:i386 libboost-wave1.90-dev:i386 libboost1.90-tools-dev:i386 libmpfrc++-dev:i386 libntl-dev:i386 glibc-doc:i386 libc-l10n:i386 locales:i386 libnss-nis:i386 manpages-dev:i386 rng-tools gmp-doc:i386 libgmp10-doc:i386 libmpfr-dev:i386 gnutls-bin libstdc++-16-doc:i386 libtool-doc gfortran | fortran95-compiler m4-doc apparmor less www-browser pinentry-doc libmail-box-perl readline-doc Recommended packages: curl | wget | lynx python3:any python3-requests gnupg-utils gpg-wks-client gpgv libidn2-0:i386 libarchive-cpio-perl libgpg-error-l10n libgpg-error-l10n:i386 gpg-wks-client:i386 libldap-common libgpm2 libsasl2-modules libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-i686-linux-gnu bsdextrautils cpp-16-i686-linux-gnu cpp-i686-linux-gnu crossbuild-essential-i386 d-shlibs debhelper dh-autoreconf dh-strip-nondeterminism dirmngr dwz file g++-16-i686-linux-gnu g++-i686-linux-gnu gcc-16-base:i386 gcc-16-cross-base gcc-16-i686-linux-gnu gcc-16-i686-linux-gnu-base gcc-i686-linux-gnu gettext gettext-base gnupg gnupg-l10n gpg gpg-agent gpgconf gpgsm groff-base intltool-debian libarchive-zip-perl libasan8:i386 libasan8-i386-cross libassuan-dev:i386 libassuan9 libassuan9:i386 libatomic1:i386 libatomic1-i386-cross libboost-atomic-dev:i386 libboost-atomic1.90-dev:i386 libboost-atomic1.90.0:i386 libboost1.90-dev:i386 libc-gconv-modules-extra:i386 libc6:i386 libc6-dev:i386 libc6-dev-i386-cross libc6-i386-cross libdebhelper-perl libelf1t64 libffi8 libfile-stripnondeterminism-perl libgcc-16-dev:i386 libgcc-16-dev-i386-cross libgcc-s1:i386 libgcc-s1-i386-cross libgcrypt20 libgmp-dev:i386 libgmp10:i386 libgmpxx4ldbl:i386 libgnutls30t64 libgomp1:i386 libgomp1-i386-cross libgpg-error-dev:i386 libgpg-error0 libgpg-error0:i386 libgpgme-dev:i386 libgpgme45:i386 libhogweed6t64:i386 libidn2-0 libitm1:i386 libitm1-i386-cross libksba8 libldap2 libmagic-mgc libmagic1t64 libncursesw6 libnettle8t64:i386 libnpth0t64 libp11-kit0 libpipeline1 libpkgconf7 libquadmath0:i386 libquadmath0-i386-cross libreadline8t64 libsasl2-2 libsasl2-modules-db libsecrecy-dev:i386 libsqlite3-0 libstdc++-16-dev:i386 libstdc++-16-dev-i386-cross libstdc++6:i386 libstdc++6-i386-cross libtasn1-6 libtool libubsan1:i386 libubsan1-i386-cross libuchardet0 libunistring5 libxml2-16 linux-libc-dev-i386-cross m4 man-db nettle-dev:i386 pinentry-curses pkgconf:i386 pkgconf-bin po-debconf readline-common sbuild-build-depends-main-dummy:i386 sensible-utils zlib1g:i386 zlib1g-dev:i386 0 upgraded, 115 newly installed, 0 to remove and 0 not upgraded. Need to get 318 MB of archives. After this operation, 1335 MB of additional disk space will be used. Get:1 copy:/build/reproducible-path/resolver-tupKmj/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [936 B] Get:2 http://mirror.einval.org/debian unstable/main arm64 readline-common all 8.3-4 [74.8 kB] Get:3 http://mirror.einval.org/debian unstable/main arm64 sensible-utils all 0.0.26 [27.0 kB] Get:4 http://mirror.einval.org/debian unstable/main arm64 libmagic-mgc arm64 1:5.47-4 [345 kB] Get:5 http://mirror.einval.org/debian unstable/main arm64 libmagic1t64 arm64 1:5.47-4 [104 kB] Get:6 http://mirror.einval.org/debian unstable/main arm64 file arm64 1:5.47-4 [43.2 kB] Get:7 http://mirror.einval.org/debian unstable/main arm64 gettext-base arm64 1.0-4 [328 kB] Get:8 http://mirror.einval.org/debian unstable/main arm64 libuchardet0 arm64 0.0.8-2+b2 [69.1 kB] Get:9 http://mirror.einval.org/debian unstable/main arm64 groff-base arm64 1.24.1-1 [1270 kB] Get:10 http://mirror.einval.org/debian unstable/main arm64 bsdextrautils arm64 2.42.3-1 [99.1 kB] Get:11 http://mirror.einval.org/debian unstable/main arm64 libpipeline1 arm64 1.5.8-3 [47.2 kB] Get:12 http://mirror.einval.org/debian unstable/main arm64 man-db arm64 2.13.1-1+b1 [1455 kB] Get:13 http://mirror.einval.org/debian unstable/main arm64 m4 arm64 1.4.21-1 [323 kB] Get:14 http://mirror.einval.org/debian unstable/main arm64 autoconf all 2.73-2 [516 kB] Get:15 http://mirror.einval.org/debian unstable/main arm64 autotools-dev all 20240727.1+nmu1 [60.0 kB] Get:16 http://mirror.einval.org/debian unstable/main arm64 automake all 1:1.18.1-4 [877 kB] Get:17 http://mirror.einval.org/debian unstable/main arm64 autopoint all 1.0-4 [820 kB] Get:18 http://mirror.einval.org/debian unstable/main arm64 gcc-16-i686-linux-gnu-base arm64 16.2.0-2cross1 [38.6 kB] Get:19 http://mirror.einval.org/debian unstable/main arm64 cpp-16-i686-linux-gnu arm64 16.2.0-2cross1 [78.5 MB] Get:20 http://mirror.einval.org/debian unstable/main arm64 cpp-i686-linux-gnu arm64 4:16.1.0-3 [4464 B] Get:21 http://mirror.einval.org/debian unstable/main arm64 binutils-i686-linux-gnu arm64 2.47-4 [1528 kB] Get:22 http://mirror.einval.org/debian unstable/main arm64 gcc-16-cross-base all 16.2.0-2cross1 [34.1 kB] Get:23 http://mirror.einval.org/debian unstable/main arm64 libc6-i386-cross all 2.43-3cross8 [1496 kB] Get:24 http://mirror.einval.org/debian unstable/main arm64 libgcc-s1-i386-cross all 16.2.0-2cross1 [87.7 kB] Get:25 http://mirror.einval.org/debian unstable/main arm64 libgomp1-i386-cross all 16.2.0-2cross1 [153 kB] Get:26 http://mirror.einval.org/debian unstable/main arm64 libitm1-i386-cross all 16.2.0-2cross1 [29.0 kB] Get:27 http://mirror.einval.org/debian unstable/main arm64 libatomic1-i386-cross all 16.2.0-2cross1 [8256 B] Get:28 http://mirror.einval.org/debian unstable/main arm64 libasan8-i386-cross all 16.2.0-2cross1 [2728 kB] Get:29 http://mirror.einval.org/debian unstable/main arm64 libstdc++6-i386-cross all 16.2.0-2cross1 [832 kB] Get:30 http://mirror.einval.org/debian unstable/main arm64 libubsan1-i386-cross all 16.2.0-2cross1 [1106 kB] Get:31 http://mirror.einval.org/debian unstable/main arm64 libquadmath0-i386-cross all 16.2.0-2cross1 [231 kB] Get:32 http://mirror.einval.org/debian unstable/main arm64 libgcc-16-dev-i386-cross all 16.2.0-2cross1 [2653 kB] Get:33 http://mirror.einval.org/debian unstable/main arm64 gcc-16-i686-linux-gnu arm64 16.2.0-2cross1 [87.6 MB] Get:34 http://mirror.einval.org/debian unstable/main arm64 gcc-i686-linux-gnu arm64 4:16.1.0-3 [1440 B] Get:35 http://mirror.einval.org/debian unstable/main arm64 linux-libc-dev-i386-cross all 7.1.13-1 [12.6 kB] Get:36 http://mirror.einval.org/debian unstable/main arm64 libc6-dev-i386-cross all 2.43-3cross8 [1879 kB] Get:37 http://mirror.einval.org/debian unstable/main arm64 libstdc++-16-dev-i386-cross all 16.2.0-2cross1 [2747 kB] Get:38 http://mirror.einval.org/debian unstable/main arm64 g++-16-i686-linux-gnu arm64 16.2.0-2cross1 [83.8 MB] Get:39 http://mirror.einval.org/debian unstable/main arm64 g++-i686-linux-gnu arm64 4:16.1.0-3 [1192 B] Get:40 http://mirror.einval.org/debian unstable/main arm64 crossbuild-essential-i386 all 12.12 [3544 B] Get:41 http://mirror.einval.org/debian unstable/main arm64 d-shlibs all 0.110 [10.1 kB] Get:42 http://mirror.einval.org/debian unstable/main arm64 libdebhelper-perl all 14.3 [77.3 kB] Get:43 http://mirror.einval.org/debian unstable/main arm64 libtool all 2.6.2-2 [553 kB] Get:44 http://mirror.einval.org/debian unstable/main arm64 dh-autoreconf all 23 [12.7 kB] Get:45 http://mirror.einval.org/debian unstable/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get:46 http://mirror.einval.org/debian unstable/main arm64 libfile-stripnondeterminism-perl all 1.15.1-1 [17.1 kB] Get:47 http://mirror.einval.org/debian unstable/main arm64 dh-strip-nondeterminism all 1.15.1-1 [6020 B] Get:48 http://mirror.einval.org/debian unstable/main arm64 libelf1t64 arm64 0.196-1 [57.9 kB] Get:49 http://mirror.einval.org/debian unstable/main arm64 dwz arm64 0.17-1 [100 kB] Get:50 http://mirror.einval.org/debian unstable/main arm64 libunistring5 arm64 1.4.2-1 [455 kB] Get:51 http://mirror.einval.org/debian unstable/main arm64 libxml2-16 arm64 2.15.4+dfsg-1 [602 kB] Get:52 http://mirror.einval.org/debian unstable/main arm64 gettext arm64 1.0-4 [2548 kB] Get:53 http://mirror.einval.org/debian unstable/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get:54 http://mirror.einval.org/debian unstable/main arm64 po-debconf all 1.0.22 [216 kB] Get:55 http://mirror.einval.org/debian unstable/main arm64 debhelper all 14.3 [934 kB] Get:56 http://mirror.einval.org/debian unstable/main arm64 libgpg-error0 arm64 1.61-5 [84.8 kB] Get:57 http://mirror.einval.org/debian unstable/main arm64 libassuan9 arm64 3.0.2-2+b2 [57.6 kB] Get:58 http://mirror.einval.org/debian unstable/main arm64 libgcrypt20 arm64 1.12.3-2 [803 kB] Get:59 http://mirror.einval.org/debian unstable/main arm64 libreadline8t64 arm64 8.3-4 [168 kB] Get:60 http://mirror.einval.org/debian unstable/main arm64 gpgconf arm64 2.4.9-7+b1 [118 kB] Get:61 http://mirror.einval.org/debian unstable/main arm64 libidn2-0 arm64 2.3.8-5 [107 kB] Get:62 http://mirror.einval.org/debian unstable/main arm64 libffi8 arm64 3.8.0-2 [25.9 kB] Get:63 http://mirror.einval.org/debian unstable/main arm64 libp11-kit0 arm64 0.26.5-1 [440 kB] Get:64 http://mirror.einval.org/debian unstable/main arm64 libtasn1-6 arm64 4.21.0-2+b1 [46.9 kB] Get:65 http://mirror.einval.org/debian unstable/main arm64 libgnutls30t64 arm64 3.8.13-1 [1434 kB] Get:66 http://mirror.einval.org/debian unstable/main arm64 libksba8 arm64 1.8.1-1 [127 kB] Get:67 http://mirror.einval.org/debian unstable/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-11 [17.1 kB] Get:68 http://mirror.einval.org/debian unstable/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-11 [52.4 kB] Get:69 http://mirror.einval.org/debian unstable/main arm64 libldap2 arm64 2.6.14+dfsg-2 [173 kB] Get:70 http://mirror.einval.org/debian unstable/main arm64 libnpth0t64 arm64 1.8-3+b2 [22.9 kB] Get:71 http://mirror.einval.org/debian unstable/main arm64 dirmngr arm64 2.4.9-7+b1 [353 kB] Get:72 http://mirror.einval.org/debian unstable/main i386 gcc-16-base i386 16.2.0-2 [38.4 kB] Get:73 http://mirror.einval.org/debian unstable/main arm64 gnupg-l10n all 2.4.9-7 [748 kB] Get:74 http://mirror.einval.org/debian unstable/main arm64 libsqlite3-0 arm64 3.53.4-2 [901 kB] Get:75 http://mirror.einval.org/debian unstable/main arm64 gpg arm64 2.4.9-7+b1 [566 kB] Get:76 http://mirror.einval.org/debian unstable/main arm64 libncursesw6 arm64 6.6+20260608-2 [125 kB] Get:77 http://mirror.einval.org/debian unstable/main arm64 pinentry-curses arm64 1.3.3-3 [88.3 kB] Get:78 http://mirror.einval.org/debian unstable/main arm64 gpg-agent arm64 2.4.9-7+b1 [246 kB] Get:79 http://mirror.einval.org/debian unstable/main arm64 gpgsm arm64 2.4.9-7+b1 [245 kB] Get:80 http://mirror.einval.org/debian unstable/main arm64 gnupg all 2.4.9-7 [415 kB] Get:81 http://mirror.einval.org/debian unstable/main i386 libgcc-s1 i386 16.2.0-2 [87.7 kB] Get:82 http://mirror.einval.org/debian unstable/main i386 libc-gconv-modules-extra i386 2.43-5 [1094 kB] Get:83 http://mirror.einval.org/debian unstable/main i386 libc6 i386 2.43-5 [1737 kB] Get:84 http://mirror.einval.org/debian unstable/main i386 libasan8 i386 16.2.0-2 [2734 kB] Get:85 http://mirror.einval.org/debian unstable/main i386 libgpg-error0 i386 1.61-5 [98.0 kB] Get:86 http://mirror.einval.org/debian unstable/main i386 libassuan9 i386 3.0.2-2+b2 [62.6 kB] Get:87 http://mirror.einval.org/debian unstable/main i386 libgpg-error-dev i386 1.61-5 [160 kB] Get:88 http://mirror.einval.org/debian unstable/main i386 libassuan-dev i386 3.0.2-2+b2 [122 kB] Get:89 http://mirror.einval.org/debian unstable/main i386 libatomic1 i386 16.2.0-2 [8160 B] Get:90 http://mirror.einval.org/debian unstable/main i386 libgomp1 i386 16.2.0-2 [153 kB] Get:91 http://mirror.einval.org/debian unstable/main i386 libitm1 i386 16.2.0-2 [28.9 kB] Get:92 http://mirror.einval.org/debian unstable/main i386 libstdc++6 i386 16.2.0-2 [857 kB] Get:93 http://mirror.einval.org/debian unstable/main i386 libubsan1 i386 16.2.0-2 [1107 kB] Get:94 http://mirror.einval.org/debian unstable/main i386 libquadmath0 i386 16.2.0-2 [231 kB] Get:95 http://mirror.einval.org/debian unstable/main i386 libgcc-16-dev i386 16.2.0-2 [2661 kB] Get:96 http://mirror.einval.org/debian unstable/main i386 libc6-dev i386 2.43-5 [1886 kB] Get:97 http://mirror.einval.org/debian unstable/main i386 libstdc++-16-dev i386 16.2.0-2 [2768 kB] Get:98 http://mirror.einval.org/debian unstable/main i386 libboost1.90-dev i386 1.90.0-6.1+b1 [11.3 MB] Get:99 http://mirror.einval.org/debian unstable/main i386 libboost-atomic1.90.0 i386 1.90.0-6.1+b1 [227 kB] Get:100 http://mirror.einval.org/debian unstable/main i386 libboost-atomic1.90-dev i386 1.90.0-6.1+b1 [229 kB] Get:101 http://mirror.einval.org/debian unstable/main i386 libboost-atomic-dev i386 1.90.0.2+nmu1 [3296 B] Get:102 http://mirror.einval.org/debian unstable/main i386 libgmp10 i386 2:6.3.0+dfsg-5+b2 [570 kB] Get:103 http://mirror.einval.org/debian unstable/main i386 libgmpxx4ldbl i386 2:6.3.0+dfsg-5+b2 [329 kB] Get:104 http://mirror.einval.org/debian unstable/main i386 libgmp-dev i386 2:6.3.0+dfsg-5+b2 [658 kB] Get:105 http://mirror.einval.org/debian unstable/main i386 libgpgme45 i386 2.2.0-2 [362 kB] Get:106 http://mirror.einval.org/debian unstable/main i386 libgpgme-dev i386 2.2.0-2 [597 kB] Get:107 http://mirror.einval.org/debian unstable/main i386 libnettle8t64 i386 3.10.2-1+b1 [317 kB] Get:108 http://mirror.einval.org/debian unstable/main i386 libhogweed6t64 i386 3.10.2-1+b1 [338 kB] Get:109 http://mirror.einval.org/debian unstable/main arm64 libpkgconf7 arm64 2.5.1-4 [45.5 kB] Get:110 http://mirror.einval.org/debian unstable/main arm64 pkgconf-bin arm64 2.5.1-4 [35.1 kB] Get:111 http://mirror.einval.org/debian unstable/main i386 pkgconf i386 2.5.1-4 [33.6 kB] Get:112 http://mirror.einval.org/debian unstable/main i386 nettle-dev i386 3.10.2-1+b1 [1336 kB] Get:113 http://mirror.einval.org/debian unstable/main i386 libsecrecy-dev i386 0.0.5+ds-5 [21.3 kB] Get:114 http://mirror.einval.org/debian unstable/main i386 zlib1g i386 1:1.3.dfsg+really1.3.2-3 [86.9 kB] Get:115 http://mirror.einval.org/debian unstable/main i386 zlib1g-dev i386 1:1.3.dfsg+really1.3.2-3 [915 kB] Preconfiguring packages ... Fetched 318 MB in 4s (90.3 MB/s) Selecting previously unselected package readline-common. (Reading database ... 12180 files and directories currently installed.) Preparing to unpack .../000-readline-common_8.3-4_all.deb ... Unpacking readline-common (8.3-4) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../001-sensible-utils_0.0.26_all.deb ... Unpacking sensible-utils (0.0.26) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../002-libmagic-mgc_1%3a5.47-4_arm64.deb ... Unpacking libmagic-mgc (1:5.47-4) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../003-libmagic1t64_1%3a5.47-4_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.47-4) ... Selecting previously unselected package file. Preparing to unpack .../004-file_1%3a5.47-4_arm64.deb ... Unpacking file (1:5.47-4) ... Selecting previously unselected package gettext-base. Preparing to unpack .../005-gettext-base_1.0-4_arm64.deb ... Unpacking gettext-base (1.0-4) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../006-libuchardet0_0.0.8-2+b2_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-2+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../007-groff-base_1.24.1-1_arm64.deb ... Unpacking groff-base (1.24.1-1) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../008-bsdextrautils_2.42.3-1_arm64.deb ... Unpacking bsdextrautils (2.42.3-1) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../009-libpipeline1_1.5.8-3_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.8-3) ... Selecting previously unselected package man-db. Preparing to unpack .../010-man-db_2.13.1-1+b1_arm64.deb ... Unpacking man-db (2.13.1-1+b1) ... Selecting previously unselected package m4. Preparing to unpack .../011-m4_1.4.21-1_arm64.deb ... Unpacking m4 (1.4.21-1) ... 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Unpacking cpp-16-i686-linux-gnu (16.2.0-2cross1) ... Selecting previously unselected package cpp-i686-linux-gnu. Preparing to unpack .../018-cpp-i686-linux-gnu_4%3a16.1.0-3_arm64.deb ... Unpacking cpp-i686-linux-gnu (4:16.1.0-3) ... Selecting previously unselected package binutils-i686-linux-gnu. Preparing to unpack .../019-binutils-i686-linux-gnu_2.47-4_arm64.deb ... Unpacking binutils-i686-linux-gnu (2.47-4) ... Selecting previously unselected package gcc-16-cross-base. Preparing to unpack .../020-gcc-16-cross-base_16.2.0-2cross1_all.deb ... Unpacking gcc-16-cross-base (16.2.0-2cross1) ... Selecting previously unselected package libc6-i386-cross. Preparing to unpack .../021-libc6-i386-cross_2.43-3cross8_all.deb ... Unpacking libc6-i386-cross (2.43-3cross8) ... Selecting previously unselected package libgcc-s1-i386-cross. Preparing to unpack .../022-libgcc-s1-i386-cross_16.2.0-2cross1_all.deb ... Unpacking libgcc-s1-i386-cross (16.2.0-2cross1) ... 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Selecting previously unselected package libubsan1-i386-cross. Preparing to unpack .../028-libubsan1-i386-cross_16.2.0-2cross1_all.deb ... Unpacking libubsan1-i386-cross (16.2.0-2cross1) ... Selecting previously unselected package libquadmath0-i386-cross. Preparing to unpack .../029-libquadmath0-i386-cross_16.2.0-2cross1_all.deb ... Unpacking libquadmath0-i386-cross (16.2.0-2cross1) ... Selecting previously unselected package libgcc-16-dev-i386-cross. Preparing to unpack .../030-libgcc-16-dev-i386-cross_16.2.0-2cross1_all.deb ... Unpacking libgcc-16-dev-i386-cross (16.2.0-2cross1) ... Selecting previously unselected package gcc-16-i686-linux-gnu. Preparing to unpack .../031-gcc-16-i686-linux-gnu_16.2.0-2cross1_arm64.deb ... Unpacking gcc-16-i686-linux-gnu (16.2.0-2cross1) ... Selecting previously unselected package gcc-i686-linux-gnu. Preparing to unpack .../032-gcc-i686-linux-gnu_4%3a16.1.0-3_arm64.deb ... Unpacking gcc-i686-linux-gnu (4:16.1.0-3) ... Selecting previously unselected package linux-libc-dev-i386-cross. Preparing to unpack .../033-linux-libc-dev-i386-cross_7.1.13-1_all.deb ... Unpacking linux-libc-dev-i386-cross (7.1.13-1) ... Selecting previously unselected package libc6-dev-i386-cross. Preparing to unpack .../034-libc6-dev-i386-cross_2.43-3cross8_all.deb ... Unpacking libc6-dev-i386-cross (2.43-3cross8) ... Selecting previously unselected package libstdc++-16-dev-i386-cross. Preparing to unpack .../035-libstdc++-16-dev-i386-cross_16.2.0-2cross1_all.deb ... Unpacking libstdc++-16-dev-i386-cross (16.2.0-2cross1) ... Selecting previously unselected package g++-16-i686-linux-gnu. Preparing to unpack .../036-g++-16-i686-linux-gnu_16.2.0-2cross1_arm64.deb ... Unpacking g++-16-i686-linux-gnu (16.2.0-2cross1) ... Selecting previously unselected package g++-i686-linux-gnu. Preparing to unpack .../037-g++-i686-linux-gnu_4%3a16.1.0-3_arm64.deb ... Unpacking g++-i686-linux-gnu (4:16.1.0-3) ... Selecting previously unselected package crossbuild-essential-i386. Preparing to unpack .../038-crossbuild-essential-i386_12.12_all.deb ... Unpacking crossbuild-essential-i386 (12.12) ... Selecting previously unselected package d-shlibs. Preparing to unpack .../039-d-shlibs_0.110_all.deb ... Unpacking d-shlibs (0.110) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../040-libdebhelper-perl_14.3_all.deb ... Unpacking libdebhelper-perl (14.3) ... Selecting previously unselected package libtool. Preparing to unpack .../041-libtool_2.6.2-2_all.deb ... Unpacking libtool (2.6.2-2) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../042-dh-autoreconf_23_all.deb ... Unpacking dh-autoreconf (23) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../043-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../044-libfile-stripnondeterminism-perl_1.15.1-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.15.1-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../045-dh-strip-nondeterminism_1.15.1-1_all.deb ... Unpacking dh-strip-nondeterminism (1.15.1-1) ... Selecting previously unselected package libelf1t64:arm64. Preparing to unpack .../046-libelf1t64_0.196-1_arm64.deb ... Unpacking libelf1t64:arm64 (0.196-1) ... Selecting previously unselected package dwz. Preparing to unpack .../047-dwz_0.17-1_arm64.deb ... Unpacking dwz (0.17-1) ... Selecting previously unselected package libunistring5:arm64. Preparing to unpack .../048-libunistring5_1.4.2-1_arm64.deb ... Unpacking libunistring5:arm64 (1.4.2-1) ... Selecting previously unselected package libxml2-16:arm64. Preparing to unpack .../049-libxml2-16_2.15.4+dfsg-1_arm64.deb ... Unpacking libxml2-16:arm64 (2.15.4+dfsg-1) ... Selecting previously unselected package gettext. Preparing to unpack .../050-gettext_1.0-4_arm64.deb ... Unpacking gettext (1.0-4) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../051-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../052-po-debconf_1.0.22_all.deb ... Unpacking po-debconf (1.0.22) ... Selecting previously unselected package debhelper. Preparing to unpack .../053-debhelper_14.3_all.deb ... Unpacking debhelper (14.3) ... Selecting previously unselected package libgpg-error0:arm64. Preparing to unpack .../054-libgpg-error0_1.61-5_arm64.deb ... Unpacking libgpg-error0:arm64 (1.61-5) ... Selecting previously unselected package libassuan9:arm64. Preparing to unpack .../055-libassuan9_3.0.2-2+b2_arm64.deb ... Unpacking libassuan9:arm64 (3.0.2-2+b2) ... Selecting previously unselected package libgcrypt20:arm64. Preparing to unpack .../056-libgcrypt20_1.12.3-2_arm64.deb ... Unpacking libgcrypt20:arm64 (1.12.3-2) ... Selecting previously unselected package libreadline8t64:arm64. Preparing to unpack .../057-libreadline8t64_8.3-4_arm64.deb ... Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:arm64 (8.3-4) ... Selecting previously unselected package gpgconf. Preparing to unpack .../058-gpgconf_2.4.9-7+b1_arm64.deb ... Unpacking gpgconf (2.4.9-7+b1) ... Selecting previously unselected package libidn2-0:arm64. Preparing to unpack .../059-libidn2-0_2.3.8-5_arm64.deb ... Unpacking libidn2-0:arm64 (2.3.8-5) ... Selecting previously unselected package libffi8:arm64. Preparing to unpack .../060-libffi8_3.8.0-2_arm64.deb ... Unpacking libffi8:arm64 (3.8.0-2) ... Selecting previously unselected package libp11-kit0:arm64. Preparing to unpack .../061-libp11-kit0_0.26.5-1_arm64.deb ... Unpacking libp11-kit0:arm64 (0.26.5-1) ... Selecting previously unselected package libtasn1-6:arm64. Preparing to unpack .../062-libtasn1-6_4.21.0-2+b1_arm64.deb ... Unpacking libtasn1-6:arm64 (4.21.0-2+b1) ... Selecting previously unselected package libgnutls30t64:arm64. Preparing to unpack .../063-libgnutls30t64_3.8.13-1_arm64.deb ... Unpacking libgnutls30t64:arm64 (3.8.13-1) ... Selecting previously unselected package libksba8:arm64. 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Setting up libgpg-error0:arm64 (1.61-5) ... Setting up libmagic-mgc (1:5.47-4) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libxml2-16:arm64 (2.15.4+dfsg-1) ... Setting up binutils-i686-linux-gnu (2.47-4) ... Setting up libdebhelper-perl (14.3) ... Setting up libsqlite3-0:arm64 (3.53.4-2) ... Setting up libpkgconf7:arm64 (2.5.1-4) ... Setting up libmagic1t64:arm64 (1:5.47-4) ... Setting up gettext-base (1.0-4) ... Setting up m4 (1.4.21-1) ... Setting up libgcrypt20:arm64 (1.12.3-2) ... Setting up gcc-16-base:i386 (16.2.0-2) ... Setting up file (1:5.47-4) ... Setting up gcc-16-cross-base (16.2.0-2cross1) ... Setting up libelf1t64:arm64 (0.196-1) ... Setting up libsasl2-modules-db:arm64 (2.1.28+dfsg1-11) ... Setting up linux-libc-dev-i386-cross (7.1.13-1) ... Setting up autotools-dev (20240727.1+nmu1) ... Setting up gnupg-l10n (2.4.9-7) ... Setting up libunistring5:arm64 (1.4.2-1) ... Setting up autopoint (1.0-4) ... Setting up d-shlibs (0.110) ... Setting up pkgconf-bin (2.5.1-4) ... Setting up libncursesw6:arm64 (6.6+20260608-2) ... Setting up libsasl2-2:arm64 (2.1.28+dfsg1-11) ... Setting up autoconf (2.73-2) ... Setting up libffi8:arm64 (3.8.0-2) ... Setting up dwz (0.17-1) ... Setting up sensible-utils (0.0.26) ... Setting up libuchardet0:arm64 (0.0.8-2+b2) ... Setting up libassuan9:arm64 (3.0.2-2+b2) ... Setting up libtasn1-6:arm64 (4.21.0-2+b1) ... Setting up libc6-i386-cross (2.43-3cross8) ... Setting up gcc-16-i686-linux-gnu-base:arm64 (16.2.0-2cross1) ... Setting up libquadmath0-i386-cross (16.2.0-2cross1) ... Setting up readline-common (8.3-4) ... Setting up libldap2:arm64 (2.6.14+dfsg-2) ... Setting up automake (1:1.18.1-4) ... update-alternatives: using /usr/bin/automake-1.18 to provide /usr/bin/automake (automake) in auto mode Setting up libksba8:arm64 (1.8.1-1) ... Setting up pinentry-curses (1.3.3-3) ... Setting up libfile-stripnondeterminism-perl (1.15.1-1) ... Setting up gettext (1.0-4) ... Setting up libtool (2.6.2-2) ... Setting up libatomic1-i386-cross (16.2.0-2cross1) ... Setting up cpp-16-i686-linux-gnu (16.2.0-2cross1) ... Setting up libidn2-0:arm64 (2.3.8-5) ... Setting up libgomp1-i386-cross (16.2.0-2cross1) ... Setting up libc6-dev-i386-cross (2.43-3cross8) ... Setting up pkgconf:i386 (2.5.1-4) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up libgcc-s1-i386-cross (16.2.0-2cross1) ... Setting up dh-autoreconf (23) ... Setting up libitm1-i386-cross (16.2.0-2cross1) ... Setting up libp11-kit0:arm64 (0.26.5-1) ... Setting up libreadline8t64:arm64 (8.3-4) ... Setting up dh-strip-nondeterminism (1.15.1-1) ... Setting up groff-base (1.24.1-1) ... Setting up gpgconf (2.4.9-7+b1) ... Setting up cpp-i686-linux-gnu (4:16.1.0-3) ... Setting up gpg (2.4.9-7+b1) ... Setting up libgnutls30t64:arm64 (3.8.13-1) ... Setting up gpg-agent (2.4.9-7+b1) ... Setting up po-debconf (1.0.22) ... Setting up gpgsm (2.4.9-7+b1) ... Setting up man-db (2.13.1-1+b1) ... Not building database; man-db/auto-update is not 'true'. Setting up libasan8-i386-cross (16.2.0-2cross1) ... Setting up libstdc++6-i386-cross (16.2.0-2cross1) ... Setting up dirmngr (2.4.9-7+b1) ... Setting up gnupg (2.4.9-7) ... Setting up debhelper (14.3) ... Setting up libubsan1-i386-cross (16.2.0-2cross1) ... Setting up libgcc-16-dev-i386-cross (16.2.0-2cross1) ... Setting up libstdc++-16-dev-i386-cross (16.2.0-2cross1) ... Setting up gcc-16-i686-linux-gnu (16.2.0-2cross1) ... Setting up gcc-i686-linux-gnu (4:16.1.0-3) ... Setting up g++-16-i686-linux-gnu (16.2.0-2cross1) ... Setting up g++-i686-linux-gnu (4:16.1.0-3) ... Setting up crossbuild-essential-i386 (12.12) ... Setting up libgcc-s1:i386 (16.2.0-2) ... Setting up libc6:i386 (2.43-5) ... Setting up libasan8:i386 (16.2.0-2) ... Setting up libc6-dev:i386 (2.43-5) ... Setting up libstdc++6:i386 (16.2.0-2) ... Setting up libitm1:i386 (16.2.0-2) ... Setting up libgpg-error0:i386 (1.61-5) ... Setting up zlib1g:i386 (1:1.3.dfsg+really1.3.2-3) ... Setting up libgomp1:i386 (16.2.0-2) ... Setting up libnettle8t64:i386 (3.10.2-1+b1) ... Setting up libgpg-error-dev:i386 (1.61-5) ... Setting up libgmp10:i386 (2:6.3.0+dfsg-5+b2) ... Setting up libquadmath0:i386 (16.2.0-2) ... Setting up libatomic1:i386 (16.2.0-2) ... Setting up libubsan1:i386 (16.2.0-2) ... Setting up zlib1g-dev:i386 (1:1.3.dfsg+really1.3.2-3) ... Setting up libhogweed6t64:i386 (3.10.2-1+b1) ... Setting up libassuan9:i386 (3.0.2-2+b2) ... Setting up libboost-atomic1.90.0:i386 (1.90.0-6.1+b1) ... Setting up libgpgme45:i386 (2.2.0-2) ... Setting up libgcc-16-dev:i386 (16.2.0-2) ... Setting up libgmpxx4ldbl:i386 (2:6.3.0+dfsg-5+b2) ... Setting up libstdc++-16-dev:i386 (16.2.0-2) ... Setting up libassuan-dev:i386 (3.0.2-2+b2) ... Setting up libgpgme-dev:i386 (2.2.0-2) ... Setting up libboost1.90-dev:i386 (1.90.0-6.1+b1) ... Setting up libboost-atomic1.90-dev:i386 (1.90.0-6.1+b1) ... Setting up libgmp-dev:i386 (2:6.3.0+dfsg-5+b2) ... Setting up nettle-dev:i386 (3.10.2-1+b1) ... Setting up libboost-atomic-dev:i386 (1.90.0.2+nmu1) ... Setting up libsecrecy-dev:i386 (0.0.5+ds-5) ... Setting up sbuild-build-depends-main-dummy:i386 (0.invalid.0) ... Processing triggers for libc-bin (2.43-5) ... +------------------------------------------------------------------------------+ | Check architectures Wed, 09 Sep 2026 06:20:27 +0000 | +------------------------------------------------------------------------------+ Arch check ok (i386 included in any) +------------------------------------------------------------------------------+ | Build environment Wed, 09 Sep 2026 06:20:28 +0000 | +------------------------------------------------------------------------------+ Kernel: Linux 6.12.107+deb13-arm64 #1 SMP Debian 6.12.107-1 (2026-08-29) arm64 (aarch64) Toolchain package versions: binutils_2.47-4 dpkg-dev_1.23.10 g++-16_16.2.0-2 gcc-16_16.2.0-2 libc6-dev_2.43-5 libstdc++-16-dev_16.2.0-2 libstdc++-16-dev-i386-cross_16.2.0-2cross1 libstdc++6_16.2.0-2 libstdc++6-i386-cross_16.2.0-2cross1 linux-libc-dev_7.1.13-1 Package versions: apt_3.3.3 apt-utils_3.3.3 autoconf_2.73-2 automake_1:1.18.1-4 autopoint_1.0-4 autotools-dev_20240727.1+nmu1 base-files_14.2 base-passwd_3.6.8+b1 bash_5.3-4 binutils_2.47-4 binutils-aarch64-linux-gnu_2.47-4 binutils-common_2.47-4 binutils-i686-linux-gnu_2.47-4 bsdextrautils_2.42.3-1 build-essential_12.12 bzip2_1.0.8-6+b2 coreutils_9.10-1 cpp_4:16.1.0-3 cpp-16_16.2.0-2 cpp-16-aarch64-linux-gnu_16.2.0-2 cpp-16-i686-linux-gnu_16.2.0-2cross1 cpp-aarch64-linux-gnu_4:16.1.0-3 cpp-i686-linux-gnu_4:16.1.0-3 crossbuild-essential-i386_12.12 d-shlibs_0.110 dash_0.5.12-12+b1 debconf_1.5.92 debhelper_14.3 debian-archive-keyring_2025.1 debianutils_5.24 dh-autoreconf_23 dh-strip-nondeterminism_1.15.1-1 diffutils_1:3.12-1+b1 dirmngr_2.4.9-7+b1 dpkg_1.23.10 dpkg-dev_1.23.10 dwz_0.17-1 file_1:5.47-4 findutils_4.11.0-2 g++_4:16.1.0-3 g++-16_16.2.0-2 g++-16-aarch64-linux-gnu_16.2.0-2 g++-16-i686-linux-gnu_16.2.0-2cross1 g++-aarch64-linux-gnu_4:16.1.0-3 g++-i686-linux-gnu_4:16.1.0-3 gcc_4:16.1.0-3 gcc-16_16.2.0-2 gcc-16-aarch64-linux-gnu_16.2.0-2 gcc-16-base_16.2.0-2 gcc-16-cross-base_16.2.0-2cross1 gcc-16-i686-linux-gnu_16.2.0-2cross1 gcc-16-i686-linux-gnu-base_16.2.0-2cross1 gcc-aarch64-linux-gnu_4:16.1.0-3 gcc-i686-linux-gnu_4:16.1.0-3 gettext_1.0-4 gettext-base_1.0-4 gnupg_2.4.9-7 gnupg-l10n_2.4.9-7 gpg_2.4.9-7+b1 gpg-agent_2.4.9-7+b1 gpgconf_2.4.9-7+b1 gpgsm_2.4.9-7+b1 grep_3.12-1+b1 groff-base_1.24.1-1 gzip_1.14-1 hostname_3.25+b1 init-system-helpers_1.69+nmu1 intltool-debian_0.35.0+20060710.6 libacl1_2.4.0-1 libapt-pkg7.0_3.3.3 libarchive-zip-perl_1.68-1 libasan8_16.2.0-2 libasan8-i386-cross_16.2.0-2cross1 libassuan-dev_3.0.2-2+b2 libassuan9_3.0.2-2+b2 libatomic1_16.2.0-2 libatomic1-i386-cross_16.2.0-2cross1 libattr1_1:2.6.0-1 libaudit-common_1:4.1.2-1 libaudit1_1:4.1.2-1+b2 libbinutils_2.47-4 libblkid1_2.42.3-1 libboost-atomic-dev_1.90.0.2+nmu1 libboost-atomic1.90-dev_1.90.0-6.1+b1 libboost-atomic1.90.0_1.90.0-6.1+b1 libboost1.90-dev_1.90.0-6.1+b1 libbz2-1.0_1.0.8-6+b2 libc-bin_2.43-5 libc-dev-bin_2.43-5 libc-gconv-modules-extra_2.43-5 libc6_2.43-5 libc6-dev_2.43-5 libc6-dev-i386-cross_2.43-3cross8 libc6-i386-cross_2.43-3cross8 libcap-ng0_0.9.5-2 libcc1-0_16.2.0-2 libcrypt1_1:4.5.2+20251210-1 libctf-nobfd0_2.47-4 libctf0_2.47-4 libdb5.3t64_5.3.28+dfsg2-11+b1 libdebconfclient0_0.283 libdebhelper-perl_14.3 libdpkg-perl_1.23.10 libelf1t64_0.196-1 libffi8_3.8.0-2 libfile-stripnondeterminism-perl_1.15.1-1 libgcc-16-dev_16.2.0-2 libgcc-16-dev-i386-cross_16.2.0-2cross1 libgcc-s1_16.2.0-2 libgcc-s1-i386-cross_16.2.0-2cross1 libgcrypt20_1.12.3-2 libgdbm-compat4t64_1.26-1+b2 libgdbm6t64_1.26-1+b2 libgmp-dev_2:6.3.0+dfsg-5+b2 libgmp10_2:6.3.0+dfsg-5+b2 libgmpxx4ldbl_2:6.3.0+dfsg-5+b2 libgnutls30t64_3.8.13-1 libgomp1_16.2.0-2 libgomp1-i386-cross_16.2.0-2cross1 libgpg-error-dev_1.61-5 libgpg-error0_1.61-5 libgpgme-dev_2.2.0-2 libgpgme45_2.2.0-2 libgprofng0_2.47-4 libhogweed6t64_3.10.2-1+b1 libhwasan0_16.2.0-2 libidn2-0_2.3.8-5 libisl23_0.28-1 libitm1_16.2.0-2 libitm1-i386-cross_16.2.0-2cross1 libjansson4_2.15.1-1 libksba8_1.8.1-1 libldap2_2.6.14+dfsg-2 liblsan0_16.2.0-2 liblz4-1_1.10.0-10 liblzma5_5.8.3-1 libmagic-mgc_1:5.47-4 libmagic1t64_1:5.47-4 libmd0_1.2.0-2 libmount1_2.42.3-1 libmpc3_1.3.1-3 libmpfr6_4.2.2-3 libncursesw6_6.6+20260608-2 libnettle8t64_3.10.2-1+b1 libnpth0t64_1.8-3+b2 libp11-kit0_0.26.5-1 libpam-modules_1.7.0-8 libpam-modules-bin_1.7.0-8 libpam-runtime_1.7.0-8 libpam0g_1.7.0-8 libpcre2-8-0_10.48-2 libperl5.42_5.42.3-1 libpipeline1_1.5.8-3 libpkgconf7_2.5.1-4 libquadmath0_16.2.0-2 libquadmath0-i386-cross_16.2.0-2cross1 libreadline8t64_8.3-4 libsasl2-2_2.1.28+dfsg1-11 libsasl2-modules-db_2.1.28+dfsg1-11 libseccomp2_2.6.1-1+b1 libsecrecy-dev_0.0.5+ds-5 libselinux1_3.11-2 libsframe3_2.47-4 libsmartcols1_2.42.3-1 libsqlite3-0_3.53.4-2 libssl3t64_3.6.4-1 libstdc++-16-dev_16.2.0-2 libstdc++-16-dev-i386-cross_16.2.0-2cross1 libstdc++6_16.2.0-2 libstdc++6-i386-cross_16.2.0-2cross1 libsystemd0_262~rc2-1 libtasn1-6_4.21.0-2+b1 libtinfo6_6.6+20260608-2 libtool_2.6.2-2 libtsan2_16.2.0-2 libubsan1_16.2.0-2 libubsan1-i386-cross_16.2.0-2cross1 libuchardet0_0.0.8-2+b2 libudev1_262~rc2-1 libunistring5_1.4.2-1 libuuid1_2.42.3-1 libxml2-16_2.15.4+dfsg-1 libxxhash0_0.8.3-2+b2 libzstd1_1.5.7+dfsg-4 linux-libc-dev_7.1.13-1 linux-libc-dev-i386-cross_7.1.13-1 login_1:4.16.0-2+really2.42.3-1 login.defs_1:4.19.3-2 m4_1.4.21-1 make_4.4.1-3+b1 man-db_2.13.1-1+b1 mawk_1.3.4.20260302-1 ncurses-base_6.6+20260608-2 ncurses-bin_6.6+20260608-2 nettle-dev_3.10.2-1+b1 openssl-provider-legacy_3.6.4-1 patch_2.8-2+b1 perl_5.42.3-1 perl-base_5.42.3-1 perl-modules-5.42_5.42.3-1 pinentry-curses_1.3.3-3 pkgconf_2.5.1-4 pkgconf-bin_2.5.1-4 po-debconf_1.0.22 readline-common_8.3-4 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-3 sensible-utils_0.0.26 sqv_1.5.0-1 sysvinit-utils_3.18-1 tar_1.35+dfsg-5 util-linux_2.42.3-1 xz-utils_5.8.3-1 zlib1g_1:1.3.dfsg+really1.3.2-3 zlib1g-dev_1:1.3.dfsg+really1.3.2-3 +------------------------------------------------------------------------------+ | Build Wed, 09 Sep 2026 06:20:28 +0000 | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: libmaus2 Binary: libmaus2-2, libmaus2-dev Architecture: any Version: 2.0.813+ds-6 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , Steffen Moeller , Étienne Mollier Homepage: https://gitlab.com/german.tischler/libmaus2 Standards-Version: 4.7.4 Vcs-Browser: https://salsa.debian.org/med-team/libmaus2 Vcs-Git: https://salsa.debian.org/med-team/libmaus2.git Build-Depends: debhelper-compat (= 14), d-shlibs, libboost-atomic-dev, libsecrecy-dev, pkgconf, zlib1g-dev Package-List: libmaus2-2 deb libs optional arch=any libmaus2-dev deb libdevel optional arch=any Checksums-Sha1: 4ad42d0c76fc0e3cc06d9067049dd5acfd986984 1655972 libmaus2_2.0.813+ds.orig.tar.xz bdbdb6aff13e41a83105800ad3d3d126a98015a0 10260 libmaus2_2.0.813+ds-6.debian.tar.xz Checksums-Sha256: 8ad66707ad0881638e67f51ba5b2182fd0ad194601025f319c87af77d933b7c9 1655972 libmaus2_2.0.813+ds.orig.tar.xz fe6a03965722fb86ebf12b39b888a17e22bd47400644273833f56d0e1a0fad70 10260 libmaus2_2.0.813+ds-6.debian.tar.xz Files: fd8774f8aa644f77bfdca25fe33348e1 1655972 libmaus2_2.0.813+ds.orig.tar.xz 8bc079315adcddd3ad6c0ca13292ad29 10260 libmaus2_2.0.813+ds-6.debian.tar.xz Dgit: c1fe707985fbeeae20dc119c0f10d5859b640823 debian archive/debian/2.0.813+ds-6 https://git.dgit.debian.org/libmaus2 -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmpzoqQUHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdrPuQ//TrZ/sTYoK9aDwdN1iazLehlrKDOt 3PZ8a7CtM3Nt4rHp3//pOwo8jicrf14pjFivOgltZpQXCdSjNVu8KaxS84qT0Qko dNC0kPrQ7+ddHtg5/v7l4l/Ea9fHkUl4FOmIKHk+fGmvvbR/iUxrpq36iUY3ePiv wNKQKjf/KIKzv87QCFJUHXHn3BBQb+oTZybb3m1vIk2d3it55Np9fQbB78BvTS0f SrA83vqIoIN3cNzYwadzsf3mqba1hI5e5wcNYZt5ifFHED/7LF/japPovykHNEpe XVXxlkI5UtMH/5xDgFSwcrxLfLo28qA26gbe/RBdTYzDU/QEPDJuIhBwfIeQQ+R9 wd1Pc0aAcF9yb/osPmwAGsjYIQrojzNxQyQqpPHKN/K0c9HiaJzj0txJJxjnfMXZ kcZijga3NrTppO8aCxLtX+mGa+c2jHA0T7Il9igU6tcrBem3Rmd93kFc5NF8ew0i L+MzXWvMfHR63ynQ9StnZAL2GeEfXxtiQC8kbOzvJICWputNjXZ1HDi/sxPOrfiO l9QruR88311210dBa4ZoWfJrigB80iVOFJfy2B8r7/YS02pQYMSTLJKPih/RmyT9 CFcxg49B2pJ2QYSHVa8TeU+v0S6CVgcfEaObkqGj9lLjf2qJ7LeCLrVkHRbCYNWv DWBCoHhFmXM8jbQ= =66m6 -----END PGP SIGNATURE----- dpkg-source: warning: cannot verify inline signature for ./libmaus2_2.0.813+ds-6.dsc: missing OpenPGP keyrings dpkg-source: info: verifying ./libmaus2_2.0.813+ds-6.dsc dpkg-source: info: skipping absent keyring /usr/share/keyrings/debian-keyring.pgp dpkg-source: info: skipping absent keyring /usr/share/keyrings/debian-tag2upload.pgp dpkg-source: info: skipping absent keyring /usr/share/keyrings/debian-nonupload.pgp dpkg-source: info: skipping absent keyring /usr/share/keyrings/debian-maintainers.pgp dpkg-source: info: extracting libmaus2 in /build/reproducible-path/libmaus2-2.0.813+ds dpkg-source: info: unpacking libmaus2_2.0.813+ds.orig.tar.xz dpkg-source: info: unpacking libmaus2_2.0.813+ds-6.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying add-support-for-loong64.patch dpkg-source: info: applying gcc-15.patch dpkg-source: info: applying unlock-stdc++.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.i386 DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_GB.UTF-8 LC_ALL=C.UTF-8 LOGNAME=sbuild PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SHELL=/bin/sh USER=sbuild dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -ai386 -Pcross,nocheck -us -uc -B --jobs-try=1 dpkg-buildpackage: info: source package libmaus2 dpkg-buildpackage: info: source version 2.0.813+ds-6 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-architecture: warning: specified GNU system type i686-linux-gnu does not match CC system type aarch64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 debian/rules clean dh clean dh_clean debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a autoreconf: export WARNINGS= autoreconf: Entering directory '.' autoreconf: configure.ac: no obvious need to run autopoint autoreconf: running: aclocal --force -I m4 autoreconf: configure.ac: tracing autoreconf: running: libtoolize --copy --force libtoolize: putting auxiliary files in '.'. libtoolize: copying file './ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'. libtoolize: copying file 'm4/libtool.m4' libtoolize: copying file 'm4/ltoptions.m4' libtoolize: copying file 'm4/ltsugar.m4' libtoolize: copying file 'm4/ltversion.m4' libtoolize: copying file 'm4/lt~obsolete.m4' autoreconf: configure.ac: not using Intltool autoreconf: configure.ac: not using Gtkdoc autoreconf: configure.ac: no need to run autopoint (confirmed) autoreconf: running: aclocal --force -I m4 autoreconf: running: /usr/bin/autoconf --force configure.ac:4: warning: The macro 'AC_CANONICAL_SYSTEM' is obsolete. configure.ac:4: You should run autoupdate. ./lib/autoconf/general.m4:2137: AC_CANONICAL_SYSTEM is expanded from... configure.ac:4: the top level configure.ac:6: warning: The macro 'AC_PROG_LIBTOOL' is obsolete. configure.ac:6: You should run autoupdate. m4/libtool.m4:100: AC_PROG_LIBTOOL is expanded from... configure.ac:6: the top level configure.ac:9: warning: 'AM_CONFIG_HEADER': this macro is obsolete. configure.ac:9: You should use the 'AC_CONFIG_HEADERS' macro instead. aclocal.m4:1059: AM_CONFIG_HEADER is expanded from... configure.ac:9: the top level configure.ac:77: warning: The macro 'AC_TRY_LINK' is obsolete. configure.ac:77: You should run autoupdate. ./lib/autoconf/general.m4:2976: AC_TRY_LINK is expanded from... configure.ac:77: the top level configure.ac:153: warning: The macro 'AC_TRY_LINK' is obsolete. configure.ac:153: You should run autoupdate. ./lib/autoconf/general.m4:2976: AC_TRY_LINK is expanded from... configure.ac:153: the top level configure.ac:211: warning: The macro 'AC_TRY_LINK' is obsolete. configure.ac:211: You should run autoupdate. ./lib/autoconf/general.m4:2976: AC_TRY_LINK is expanded from... configure.ac:211: the top level configure.ac:247: warning: The macro 'AC_TRY_LINK' is obsolete. configure.ac:247: You should run autoupdate. ./lib/autoconf/general.m4:2976: AC_TRY_LINK is expanded from... configure.ac:247: the top level configure.ac:276: warning: The macro 'AC_TRY_LINK' is obsolete. configure.ac:276: You should run autoupdate. ./lib/autoconf/general.m4:2976: AC_TRY_LINK is expanded from... configure.ac:276: the top level configure.ac:331: warning: The macro 'AC_TRY_LINK' is obsolete. configure.ac:331: You should run autoupdate. ./lib/autoconf/general.m4:2976: AC_TRY_LINK is expanded from... configure.ac:331: the top level configure.ac:386: warning: The macro 'AC_TRY_LINK' is obsolete. configure.ac:386: You should run autoupdate. ./lib/autoconf/general.m4:2976: AC_TRY_LINK is expanded from... configure.ac:386: the top level configure.ac:565: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:565: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:565: the top level configure.ac:577: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:577: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:577: the top level configure.ac:589: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:589: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:589: the top level configure.ac:601: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:601: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:601: the top level configure.ac:613: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:613: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:613: the top level configure.ac:627: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:627: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:627: the top level configure.ac:641: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:641: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:641: the top level configure.ac:655: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:655: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:655: the top level configure.ac:669: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:669: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:669: the top level configure.ac:683: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:683: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:683: the top level configure.ac:696: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:696: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:696: the top level configure.ac:713: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:713: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:713: the top level configure.ac:727: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:727: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:727: the top level configure.ac:743: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:743: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:743: the top level configure.ac:759: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:759: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:759: the top level configure.ac:773: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:773: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:773: the top level configure.ac:786: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:786: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:786: the top level configure.ac:800: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:800: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:800: the top level configure.ac:813: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:813: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:813: the top level configure.ac:829: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:829: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:829: the top level configure.ac:842: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:842: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:842: the top level configure.ac:856: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:856: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:856: the top level configure.ac:870: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:870: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:870: the top level configure.ac:884: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:884: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:884: the top level configure.ac:900: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:900: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:900: the top level configure.ac:941: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:941: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:941: the top level configure.ac:958: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:958: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:958: the top level configure.ac:977: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:977: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:977: the top level configure.ac:992: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:992: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:992: the top level configure.ac:1009: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:1009: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:1009: the top level configure.ac:1027: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:1027: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:1027: the top level configure.ac:1045: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:1045: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:1045: the top level configure.ac:1062: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:1062: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:1062: the top level configure.ac:1079: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:1079: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:1079: the top level configure.ac:1096: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:1096: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:1096: the top level configure.ac:1113: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:1113: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:1113: the top level configure.ac:1146: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:1146: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:1146: the top level configure.ac:1163: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:1163: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:1163: the top level configure.ac:1180: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:1180: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:1180: the top level configure.ac:1213: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:1213: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:1213: the top level configure.ac:1231: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:1231: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:1231: the top level configure.ac:1249: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:1249: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:1249: the top level configure.ac:1269: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:1269: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:1269: the top level configure.ac:1289: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:1289: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:1289: the top level configure.ac:1309: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:1309: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:1309: the top level configure.ac:1329: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:1329: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:1329: the top level configure.ac:1349: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:1349: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:1349: the top level configure.ac:1369: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:1369: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:1369: the top level configure.ac:1389: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:1389: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:1389: the top level configure.ac:1426: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:1426: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:1426: the top level configure.ac:1446: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:1446: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:1446: the top level configure.ac:1466: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:1466: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:1466: the top level configure.ac:1486: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:1486: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:1486: the top level configure.ac:1525: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:1525: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:1525: the top level configure.ac:1545: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:1545: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:1545: the top level configure.ac:1566: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:1566: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:1566: the top level configure.ac:1586: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:1586: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:1586: the top level configure.ac:1601: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:1601: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:1601: the top level configure.ac:1677: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:1677: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:1677: the top level configure.ac:1686: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:1686: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:1686: the top level configure.ac:1702: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:1702: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:1702: the top level configure.ac:1718: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:1718: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:1718: the top level configure.ac:1731: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:1731: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:1731: the top level configure.ac:1746: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:1746: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:1746: the top level configure.ac:1760: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:1760: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:1760: the top level configure.ac:1774: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:1774: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:1774: the top level configure.ac:1787: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:1787: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:1787: the top level configure.ac:1806: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:1806: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:1806: the top level configure.ac:1887: warning: The macro 'AC_TRY_LINK' is obsolete. configure.ac:1887: You should run autoupdate. ./lib/autoconf/general.m4:2976: AC_TRY_LINK is expanded from... lib/m4sugar/m4sh.m4:689: _AS_IF_ELSE is expanded from... lib/m4sugar/m4sh.m4:696: AS_IF is expanded from... ./lib/autoconf/general.m4:2305: AC_CACHE_VAL is expanded from... ./lib/autoconf/general.m4:2326: AC_CACHE_CHECK is expanded from... m4/ax_openmp.m4:68: AX_OPENMP is expanded from... configure.ac:1887: the top level configure.ac:1897: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:1897: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:1897: the top level configure.ac:1913: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:1913: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:1913: the top level configure.ac:1933: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:1933: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:1933: the top level configure.ac:2315: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:2315: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:2315: the top level configure.ac:2354: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:2354: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:2354: the top level configure.ac:2711: warning: The macro 'AC_TRY_LINK' is obsolete. configure.ac:2711: You should run autoupdate. ./lib/autoconf/general.m4:2976: AC_TRY_LINK is expanded from... configure.ac:2711: the top level configure.ac:2779: warning: The macro 'AC_TRY_LINK' is obsolete. configure.ac:2779: You should run autoupdate. ./lib/autoconf/general.m4:2976: AC_TRY_LINK is expanded from... configure.ac:2779: the top level configure.ac:2808: warning: The macro 'AC_TRY_LINK' is obsolete. configure.ac:2808: You should run autoupdate. ./lib/autoconf/general.m4:2976: AC_TRY_LINK is expanded from... configure.ac:2808: the top level configure.ac:2824: warning: The macro 'AC_TRY_LINK' is obsolete. configure.ac:2824: You should run autoupdate. ./lib/autoconf/general.m4:2976: AC_TRY_LINK is expanded from... configure.ac:2824: the top level configure.ac:2990: warning: The macro 'AC_TRY_LINK' is obsolete. configure.ac:2990: You should run autoupdate. ./lib/autoconf/general.m4:2976: AC_TRY_LINK is expanded from... configure.ac:2990: the top level configure.ac:3215: warning: AC_OUTPUT should be used without arguments. configure.ac:3215: You should run autoupdate. autoreconf: running: /usr/bin/autoheader --force autoreconf: running: automake --add-missing --copy --force-missing configure.ac:6: installing './compile' configure.ac:4: installing './config.guess' configure.ac:4: installing './config.sub' configure.ac:8: installing './install-sh' configure.ac:8: installing './missing' Makefile.am: installing './INSTALL' src/Makefile.am: installing './depcomp' parallel-tests: installing './test-driver' autoreconf: configure.ac: not running make: --make not given autoreconf: Leaving directory '.' dh_auto_configure -a ./configure --build=aarch64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/i386-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --host=i686-linux-gnu configure: Configuring for source in directory . checking build system type... aarch64-unknown-linux-gnu checking host system type... i686-pc-linux-gnu checking target system type... i686-pc-linux-gnu checking how to print strings... printf checking for i686-linux-gnu-gcc... i686-linux-gnu-gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... yes checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether i686-linux-gnu-gcc accepts -g... yes checking for i686-linux-gnu-gcc option to enable C23 features... none needed checking whether i686-linux-gnu-gcc understands -c and -o together... yes checking for a sed that does not truncate output... /usr/bin/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking for ld used by i686-linux-gnu-gcc... /usr/i686-linux-gnu/bin/ld checking if the linker (/usr/i686-linux-gnu/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/i686-linux-gnu-nm -B checking the name lister (/usr/bin/i686-linux-gnu-nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert aarch64-unknown-linux-gnu file names to i686-pc-linux-gnu format... func_convert_file_noop checking how to convert aarch64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/i686-linux-gnu/bin/ld option to reload object files... -r checking for file... file checking for i686-linux-gnu-objdump... i686-linux-gnu-objdump checking how to recognize dependent libraries... pass_all checking for i686-linux-gnu-dlltool... no checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for i686-linux-gnu-ranlib... i686-linux-gnu-ranlib checking for i686-linux-gnu-ar... i686-linux-gnu-ar checking for archiver @FILE support... @ checking for i686-linux-gnu-strip... i686-linux-gnu-strip checking for gawk... no checking for mawk... mawk checking command to parse /usr/bin/i686-linux-gnu-nm -B output from i686-linux-gnu-gcc object... ok checking for sysroot... no checking for a working dd... /usr/bin/dd checking how to truncate binary pipes... /usr/bin/dd bs=4096 count=1 checking for i686-linux-gnu-mt... no checking for mt... no checking if : is a manifest tool... no checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking which variant of shared library versioning to provide... (default) aix checking for objdir... .libs checking if i686-linux-gnu-gcc supports -fno-rtti -fno-exceptions... no checking for i686-linux-gnu-gcc option to produce PIC... -fPIC -DPIC checking if i686-linux-gnu-gcc PIC flag -fPIC -DPIC works... yes checking if i686-linux-gnu-gcc static flag -static works... yes checking if i686-linux-gnu-gcc supports -c -o file.o... yes checking if i686-linux-gnu-gcc supports -c -o file.o... (cached) yes checking whether the i686-linux-gnu-gcc linker (/usr/i686-linux-gnu/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for a BSD-compatible install... /usr/bin/install -c checking whether sleep supports fractional seconds... yes checking filesystem timestamp resolution... 0.01 checking whether build environment is sane... yes checking for i686-linux-gnu-strip... (cached) i686-linux-gnu-strip checking for a race-free mkdir -p... /usr/bin/mkdir -p checking whether make sets $(MAKE)... yes checking whether make supports the include directive... yes (GNU style) checking whether make supports nested variables... yes checking xargs -n works... yes checking how to create a pax tar archive... gnutar checking dependency style of i686-linux-gnu-gcc... none checking whether we are cross compiling... yes checking for bash... /usr/bin/bash checking for base64... /usr/bin/base64 checking for i686-linux-gnu-gcc... (cached) i686-linux-gnu-gcc checking whether the compiler supports GNU C... (cached) yes checking whether i686-linux-gnu-gcc accepts -g... (cached) yes checking for i686-linux-gnu-gcc option to enable C23 features... (cached) none needed checking whether i686-linux-gnu-gcc understands -c and -o together... (cached) yes checking whether the compiler supports GNU C++... yes checking whether i686-linux-gnu-g++ accepts -g... yes checking how to run the C++ preprocessor... i686-linux-gnu-g++ -E checking for ld used by i686-linux-gnu-g++... /usr/i686-linux-gnu/bin/ld checking if the linker (/usr/i686-linux-gnu/bin/ld) is GNU ld... yes checking whether the i686-linux-gnu-g++ linker (/usr/i686-linux-gnu/bin/ld) supports shared libraries... yes checking for i686-linux-gnu-g++ option to produce PIC... -fPIC -DPIC checking if i686-linux-gnu-g++ PIC flag -fPIC -DPIC works... yes checking if i686-linux-gnu-g++ static flag -static works... yes checking if i686-linux-gnu-g++ supports -c -o file.o... yes checking if i686-linux-gnu-g++ supports -c -o file.o... (cached) yes checking whether the i686-linux-gnu-g++ linker (/usr/i686-linux-gnu/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking dependency style of i686-linux-gnu-g++... none checking whether host cpu is x86_64... no checking whether host os is GNU/Linux... yes checking whether we are compiling for x86_64 CPU on GNU/Linux OS ... no checking size of unsigned long... 4 checking for winsock2.h... no checking for ws2tcpip.h... no checking for sys/wait.h... yes checking for sys/ioctl.h... yes checking for execinfo.h... yes checking for windows.h... no checking for unistd.h... (cached) yes checking for linux/sysctl.h... yes checking for features.h... yes checking for dlfcn.h... (cached) yes checking for sys/prctl.h... yes checking for libunwind.h... no checking for unw_backtrace in -lunwind... no checking for i686-linux-gnu-pkg-config... /usr/bin/i686-linux-gnu-pkg-config checking pkg-config is at least version 0.9.0... yes checking for zlib >= 0... yes checking for libcurl >= 7.47.0... no checking for parasail-1 >= 2.4.3... no checking for zlib >= 0... yes checking whether we can compile a zlib program... yes checking for snappy.h... no checking for libdeflate.h... no checking for GetProcessMemoryInfo... no checking for dlopen... yes checking for dlerror... yes checking for dlsym... yes checking for dlclose... yes checking for dlopen in -ldl... yes checking for dlerror in -ldl... yes checking for dlsym in -ldl... yes checking for dlclose in -ldl... yes checking whether we found the dlopen function anywhere... yes checking whether we found the dlerror function anywhere... yes checking whether we found the dlsym function anywhere... yes checking whether we found the dlclose function anywhere... yes checking whether we found all the functions required for dynamic modules somewhere... yes checking whether we need the dl library for any of the dl functions... no checking for backtrace... yes checking for gethostname... yes checking for fsync... yes checking for dup2... yes checking for execv... yes checking for mkstemp... yes checking for fcntl... yes checking for pipe... yes checking for fork... yes checking for symlink... yes checking for waitpid... yes checking for gethostbyname... yes checking for gethostbyname2... yes checking for prctl... yes checking whether SIGPIPE exists... yes checking whether SIGHUP exists... yes checking whether pid_t exists... yes checking whether getpid exists... yes checking whether O_RDONLY... yes checking whether O_WRONLY... yes checking whether O_RDWR... yes checking whether O_CREAT... yes checking whether O_TRUNC... yes checking whether OFF_T... yes checking whether lseek function exists... yes checking whether read function exists... yes checking whether fstat function exists... yes checking whether stat function exists... yes checking whether fstatfs function exists... yes checking whether sysconf function exists... yes checking whether write function exists... yes checking whether WIFEXITED exists... yes checking whether WEXITSTATUS exists... yes checking whether the C++ compiler supports the -msse4 flag... yes checking whether the C++ compiler supports the -msse2 flag... yes checking whether the C++ compiler supports the -mssse3 flag... yes checking whether the C++ compiler supports the -msse4.1 flag... yes checking whether the C++ compiler supports the -mavx flag... yes checking whether the C++ compiler supports the -mavx2 flag... yes checking for smmintrin.h... yes checking for immintrin.h... yes checking whether the C++ compiler supports all intrinsics required for SIMD global alignment (X128/8 variant)... no checking whether the C++ compiler supports all intrinsics required for SIMD global alignment (X128/16 variant)... no checking whether the C++ compiler supports all intrinsics required for SIMD global alignment (Y256/8 variant)... no checking whether the C++ compiler supports all intrinsics required for SIMD global alignment (Y256/16 variant)... no checking whether the C++ compiler supports all intrinsics required for one to many global alignment using AVX2... no checking whether the C++ compiler supports the -msse4 flag... yes checking for open with 2 arguments... yes checking for open with 3 arguments... yes checking for close... yes checking for O_NONBLOCK... yes checking for O_LARGEFILE... yes checking for O_BINARY... no checking for ssize_t... yes checking for socklen_t... yes checking whether the C++ compiler supports the -W flag... yes checking whether the C++ compiler supports the -Wall flag... yes checking whether the C++ compiler supports the -Wnon-virtual-dtor flag... yes checking for OpenMP flag of C++ compiler... -fopenmp checking whether the C++ compiler supports the -rdynamic flag... yes checking whether std::unique_ptr exists... yes checking whether std::shared_ptr exists... yes checking whether std::unordered_map exists... yes checking whether std::unordered_set exists... yes checking whether std::move exists... yes checking whether std::filesystem exists... yes checking whether byte ordering is bigendian... no checking for psapi.h... no checking for fcntl.h... yes checking for libgen.h... yes checking for sys/stat.h... (cached) yes checking for sys/types.h... (cached) yes checking for sys/vfs.h... yes checking for boost/smart_ptr/atomic_shared_ptr.hpp... yes checking whether std::atomic< std::shared_ptr<> > is supported... yes checking whether boost::atomic_shared_ptr< > is supported... yes configure: Using atomic from std libray checking whether we can compile a program using statfs... yes checking whether struct statfs has field f_iosize... no checking whether struct statfs has field f_bsize... yes checking whether the C++ compiler supports the -pthread flag... yes checking whether getpagesize is present... yes checking for unsigned __int128... no checking whether we can compile a program using the gmp library... yes checking for libsecrecy >= 0.0.0... yes checking whether we can compile a libsecrecy program... yes checking for i686-linux-gnu-gcc option to support large files... -D_FILE_OFFSET_BITS=64 checking for declarations of fseeko and ftello... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating libmaus2.pc config.status: creating ubuntu.sh config.status: creating src/libmaus2/LibMausConfig.hpp config.status: creating test/Makefile config.status: creating config.h config.status: executing libtool commands config.status: executing depfiles commands dh_auto_build -a make -j1 make[1]: Entering directory '/build/reproducible-path/libmaus2-2.0.813+ds' make all-recursive make[2]: Entering directory '/build/reproducible-path/libmaus2-2.0.813+ds' Making all in src make[3]: Entering directory '/build/reproducible-path/libmaus2-2.0.813+ds/src' i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testThreadPool-testThreadPool.o `test -f 'test/testThreadPool.cpp' || echo './'`test/testThreadPool.cpp /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/la-StaticInitialization.lo `test -f 'libmaus2/StaticInitialization.cpp' || echo './'`libmaus2/StaticInitialization.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/StaticInitialization.cpp -fPIC -DPIC -o libmaus2/.libs/la-StaticInitialization.o In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/util/IntervalTree.hpp:25, from ./libmaus2/aio/FileFragment.hpp:27, from ./libmaus2/sorting/PairFileSorting.hpp:27, from libmaus2/StaticInitialization.cpp:499: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/bambam/CigarStringParser.hpp:25, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from ./libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from libmaus2/StaticInitialization.cpp:560: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ In file included from ./libmaus2/bambam/BamAlignmentDecoder.hpp:24: ./libmaus2/bambam/BamHeaderLowMem.hpp: In member function ‘void libmaus2::bambam::BamHeaderLowMem::setupFromText()’: ./libmaus2/bambam/BamHeaderLowMem.hpp:366:58: warning: variable ‘ln’ set but not used [-Wunused-but-set-variable=] 366 | uint64_t ln = 0; | ^~ libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/StaticInitialization.cpp -o libmaus2/la-StaticInitialization.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/bitio/la-CompactArray.lo `test -f 'libmaus2/bitio/CompactArray.cpp' || echo './'`libmaus2/bitio/CompactArray.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bitio/CompactArray.cpp -fPIC -DPIC -o libmaus2/bitio/.libs/la-CompactArray.o libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bitio/CompactArray.cpp -o libmaus2/bitio/la-CompactArray.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/rank/la-RankTable.lo `test -f 'libmaus2/rank/RankTable.cpp' || echo './'`libmaus2/rank/RankTable.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/rank/RankTable.cpp -fPIC -DPIC -o libmaus2/rank/.libs/la-RankTable.o libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/rank/RankTable.cpp -o libmaus2/rank/la-RankTable.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/rank/la-log2table.lo `test -f 'libmaus2/rank/log2table.cpp' || echo './'`libmaus2/rank/log2table.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/rank/log2table.cpp -fPIC -DPIC -o libmaus2/rank/.libs/la-log2table.o libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/rank/log2table.cpp -o libmaus2/rank/la-log2table.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/fastx/la-isFastQ.lo `test -f 'libmaus2/fastx/isFastQ.cpp' || echo './'`libmaus2/fastx/isFastQ.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/fastx/isFastQ.cpp -fPIC -DPIC -o libmaus2/fastx/.libs/la-isFastQ.o libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/fastx/isFastQ.cpp -o libmaus2/fastx/la-isFastQ.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/wavelet/la-toWaveletTreeBits.lo `test -f 'libmaus2/wavelet/toWaveletTreeBits.cpp' || echo './'`libmaus2/wavelet/toWaveletTreeBits.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/wavelet/toWaveletTreeBits.cpp -fPIC -DPIC -o libmaus2/wavelet/.libs/la-toWaveletTreeBits.o libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/wavelet/toWaveletTreeBits.cpp -o libmaus2/wavelet/la-toWaveletTreeBits.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/suffixsort/la-divsufsort.lo `test -f 'libmaus2/suffixsort/divsufsort.cpp' || echo './'`libmaus2/suffixsort/divsufsort.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/divsufsort.cpp -fPIC -DPIC -o libmaus2/suffixsort/.libs/la-divsufsort.o libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/divsufsort.cpp -o libmaus2/suffixsort/la-divsufsort.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/digest/la-md5.lo `test -f 'libmaus2/digest/md5.cpp' || echo './'`libmaus2/digest/md5.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/digest/md5.cpp -fPIC -DPIC -o libmaus2/digest/.libs/la-md5.o libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/digest/md5.cpp -o libmaus2/digest/la-md5.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/math/la-primes16.lo `test -f 'libmaus2/math/primes16.cpp' || echo './'`libmaus2/math/primes16.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/math/primes16.cpp -fPIC -DPIC -o libmaus2/math/.libs/la-primes16.o libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/math/primes16.cpp -o libmaus2/math/la-primes16.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/util/la-OutputFileNameTools.lo `test -f 'libmaus2/util/OutputFileNameTools.cpp' || echo './'`libmaus2/util/OutputFileNameTools.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/util/OutputFileNameTools.cpp -fPIC -DPIC -o libmaus2/util/.libs/la-OutputFileNameTools.o libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/util/OutputFileNameTools.cpp -o libmaus2/util/la-OutputFileNameTools.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/select/la-ESelectBase.lo `test -f 'libmaus2/select/ESelectBase.cpp' || echo './'`libmaus2/select/ESelectBase.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/select/ESelectBase.cpp -fPIC -DPIC -o libmaus2/select/.libs/la-ESelectBase.o libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/select/ESelectBase.cpp -o libmaus2/select/la-ESelectBase.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/bambam/la-CigarStringParser.lo `test -f 'libmaus2/bambam/CigarStringParser.cpp' || echo './'`libmaus2/bambam/CigarStringParser.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/CigarStringParser.cpp -fPIC -DPIC -o libmaus2/bambam/.libs/la-CigarStringParser.o In file included from ./libmaus2/bambam/CigarStringParser.hpp:25, from libmaus2/bambam/CigarStringParser.cpp:20: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/CigarStringParser.cpp -o libmaus2/bambam/la-CigarStringParser.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/fastx/la-Phred.lo `test -f 'libmaus2/fastx/Phred.cpp' || echo './'`libmaus2/fastx/Phred.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/fastx/Phred.cpp -fPIC -DPIC -o libmaus2/fastx/.libs/la-Phred.o libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/fastx/Phred.cpp -o libmaus2/fastx/la-Phred.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/lz/la-SnappyCompress.lo `test -f 'libmaus2/lz/SnappyCompress.cpp' || echo './'`libmaus2/lz/SnappyCompress.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lz/SnappyCompress.cpp -fPIC -DPIC -o libmaus2/lz/.libs/la-SnappyCompress.o libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lz/SnappyCompress.cpp -o libmaus2/lz/la-SnappyCompress.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/bambam/la-ReadEndsContainer.lo `test -f 'libmaus2/bambam/ReadEndsContainer.cpp' || echo './'`libmaus2/bambam/ReadEndsContainer.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/ReadEndsContainer.cpp -fPIC -DPIC -o libmaus2/bambam/.libs/la-ReadEndsContainer.o In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/bambam/BamAuxFilterVector.hpp:22, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:27, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/ReadEndsContainer.hpp:23, from libmaus2/bambam/ReadEndsContainer.cpp:19: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/bambam/CigarStringParser.hpp:25, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ In file included from ./libmaus2/bambam/ReadEndsBlockDecoderBase.hpp:31, from ./libmaus2/bambam/ReadEndsContainer.hpp:34: ./libmaus2/index/ExternalMemoryIndexDecoder.hpp: In instantiation of ‘void libmaus2::index::ExternalMemoryIndexDecoder<_data_type, _base_level_log, _inner_level_log, _comparator>::setup(uint64_t) [with _data_type = libmaus2::bambam::ReadEndsBase; unsigned int _base_level_log = 9; unsigned int _inner_level_log = 2; _comparator = std::less; uint64_t = long long unsigned int]’: ./libmaus2/index/ExternalMemoryIndexDecoder.hpp:189:5: required from ‘libmaus2::index::ExternalMemoryIndexDecoder<_data_type, _base_level_log, _inner_level_log, _comparator>::ExternalMemoryIndexDecoder(std::istream&, uint64_t) [with _data_type = libmaus2::bambam::ReadEndsBase; unsigned int _base_level_log = 9; unsigned int _inner_level_log = 2; _comparator = std::less; std::istream = std::basic_istream; uint64_t = long long unsigned int]’ 189 | setup(rcache_thres); | ^~~~~ ./libmaus2/bambam/ReadEndsBlockDecoderBase.hpp:76:6: required from ‘libmaus2::index::ExternalMemoryIndexDecoder::unique_ptr_type libmaus2::bambam::ReadEndsBlockDecoderBase<_proxy>::openIndex() [with bool _proxy = true; libmaus2::index::ExternalMemoryIndexDecoder::unique_ptr_type = std::unique_ptr, std::default_delete > >]’ 76 | new libmaus2::index::ExternalMemoryIndexDecoder(index) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/bambam/ReadEndsBlockDecoderBase.hpp:140:15: required from ‘libmaus2::bambam::ReadEndsBlockDecoderBase<_proxy>::ReadEndsBlockDecoderBase(libmaus2::bambam::ReadEndsBlockDecoderBaseCollectionInfoDataStreamProvider&, libmaus2::bambam::ReadEndsBlockDecoderBaseCollectionInfoIndexStreamProvider&, std::istream&, std::istream&, uint64_t, uint64_t) [with bool _proxy = true; std::istream = std::basic_istream; uint64_t = long long unsigned int]’ 140 | Pindex(openIndex()), | ^~~~~~~~~ ./libmaus2/bambam/ReadEndsBlockDecoderBaseCollection.hpp:140:8: required from ‘libmaus2::bambam::ReadEndsBlockDecoderBaseCollection<_proxy>::ReadEndsBlockDecoderBaseCollection(const std::vector&, bool, uint64_t) [with bool _proxy = true; uint64_t = long long unsigned int]’ 140 | new libmaus2::bambam::ReadEndsBlockDecoderBase( | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 | subinfo, | ~~~~~~~~ 142 | subinfo, | ~~~~~~~~ 143 | *(subinfo.datastr), | ~~~~~~~~~~~~~~~~~~~ 144 | *(subinfo.indexstr), | ~~~~~~~~~~~~~~~~~~~~ 145 | subinfo.indexoffset.at(i), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 | subinfo.blockelcnt.at(i) | ~~~~~~~~~~~~~~~~~~~~~~~~ 147 | ) | ~ ./libmaus2/bambam/ReadEndsContainer.hpp:590:6: required from here 590 | ) | ^ ./libmaus2/index/ExternalMemoryIndexDecoder.hpp:99:46: warning: variable ‘numcache’ set but not used [-Wunused-but-set-variable=] 99 | unsigned int numcache = 0; | ^~~~~~~~ libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/ReadEndsContainer.cpp -o libmaus2/bambam/la-ReadEndsContainer.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/bambam/la-ReadEnds.lo `test -f 'libmaus2/bambam/ReadEnds.cpp' || echo './'`libmaus2/bambam/ReadEnds.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/ReadEnds.cpp -fPIC -DPIC -o libmaus2/bambam/.libs/la-ReadEnds.o In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/bambam/BamAuxFilterVector.hpp:22, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:27, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/ReadEndsBase.hpp:22, from ./libmaus2/bambam/ReadEnds.hpp:22, from libmaus2/bambam/ReadEnds.cpp:19: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/bambam/CigarStringParser.hpp:25, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/ReadEnds.cpp -o libmaus2/bambam/la-ReadEnds.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/huffman/la-IndexLoaderBase.lo `test -f 'libmaus2/huffman/IndexLoaderBase.cpp' || echo './'`libmaus2/huffman/IndexLoaderBase.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/huffman/IndexLoaderBase.cpp -fPIC -DPIC -o libmaus2/huffman/.libs/la-IndexLoaderBase.o libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/huffman/IndexLoaderBase.cpp -o libmaus2/huffman/la-IndexLoaderBase.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/bambam/la-BamAlignmentDecoderBase.lo `test -f 'libmaus2/bambam/BamAlignmentDecoderBase.cpp' || echo './'`libmaus2/bambam/BamAlignmentDecoderBase.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/BamAlignmentDecoderBase.cpp -fPIC -DPIC -o libmaus2/bambam/.libs/la-BamAlignmentDecoderBase.o In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/bambam/BamAuxFilterVector.hpp:22, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:27, from libmaus2/bambam/BamAlignmentDecoderBase.cpp:19: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/bambam/CigarStringParser.hpp:25, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/BamAlignmentDecoderBase.cpp -o libmaus2/bambam/la-BamAlignmentDecoderBase.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/bambam/la-StrCmpNum.lo `test -f 'libmaus2/bambam/StrCmpNum.cpp' || echo './'`libmaus2/bambam/StrCmpNum.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/StrCmpNum.cpp -fPIC -DPIC -o libmaus2/bambam/.libs/la-StrCmpNum.o libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/StrCmpNum.cpp -o libmaus2/bambam/la-StrCmpNum.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/huffman/la-KvInitResult.lo `test -f 'libmaus2/huffman/KvInitResult.cpp' || echo './'`libmaus2/huffman/KvInitResult.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/huffman/KvInitResult.cpp -fPIC -DPIC -o libmaus2/huffman/.libs/la-KvInitResult.o libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/huffman/KvInitResult.cpp -o libmaus2/huffman/la-KvInitResult.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/fm/la-MausFmToBwaConversion.lo `test -f 'libmaus2/fm/MausFmToBwaConversion.cpp' || echo './'`libmaus2/fm/MausFmToBwaConversion.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/fm/MausFmToBwaConversion.cpp -fPIC -DPIC -o libmaus2/fm/.libs/la-MausFmToBwaConversion.o In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/util/IntervalTree.hpp:25, from ./libmaus2/gamma/GammaRLDecoder.hpp:28, from libmaus2/fm/MausFmToBwaConversion.cpp:24: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/huffman/huffman.hpp:183, from ./libmaus2/huffman/CanonicalEncoder.hpp:26, from ./libmaus2/gamma/GammaRLDecoder.hpp:26: ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 2]’: ./libmaus2/huffman/HuffmanSorting.hpp:860:55: required from here 860 | huffman::EncodeTable enctable ( root ); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:188: ./libmaus2/huffman/HuffmanSorting.hpp: In instantiation of ‘static void libmaus2::huffman::HuffmanSorting::uncompressHuffmanCoded(uint64_t*, uint64_t, uint64_t, uint64_t, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::HuffmanTreeNode*, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::EncodeTable&) [with unsigned int lookupwords = 2; uint64_t = long long unsigned int]’: ./libmaus2/huffman/HuffmanSorting.hpp:1091:27: required from here 1091 | uncompressHuffmanCoded(acode.get(), 0 /* bit offset */, lowhalf /* syms */, firsthighsym, enctable,dectable,root.get(),dectable0,dectable1,enctable0,enctable1); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/huffman/HuffmanSorting.hpp:534:42: warning: variable ‘alldecoffset’ set but not used [-Wunused-but-set-variable=] 534 | uint64_t alldecoffset = highdecoffset; | ^~~~~~~~~~~~ ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 1]’: ./libmaus2/huffman/CanonicalEncoder.hpp:219:116: required from here 219 | return ::libmaus2::huffman::EncodeTable<1>::unique_ptr_type(new ::libmaus2::huffman::EncodeTable<1>(Ptree.get())); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/fm/MausFmToBwaConversion.cpp -o libmaus2/fm/la-MausFmToBwaConversion.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/util/la-TempFileNameGenerator.lo `test -f 'libmaus2/util/TempFileNameGenerator.cpp' || echo './'`libmaus2/util/TempFileNameGenerator.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/util/TempFileNameGenerator.cpp -fPIC -DPIC -o libmaus2/util/.libs/la-TempFileNameGenerator.o libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/util/TempFileNameGenerator.cpp -o libmaus2/util/la-TempFileNameGenerator.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/util/la-TempFileNameGeneratorState.lo `test -f 'libmaus2/util/TempFileNameGeneratorState.cpp' || echo './'`libmaus2/util/TempFileNameGeneratorState.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 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./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/util/IntervalTree.hpp:25, from libmaus2/util/IntervalTree.cpp:20: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/util/IntervalTree.cpp -o libmaus2/util/la-IntervalTree.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/util/la-GenericIntervalTree.lo `test -f 'libmaus2/util/GenericIntervalTree.cpp' || echo './'`libmaus2/util/GenericIntervalTree.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/util/GenericIntervalTree.cpp -fPIC -DPIC -o libmaus2/util/.libs/la-GenericIntervalTree.o In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/util/IntervalTree.hpp:25, from ./libmaus2/util/GenericIntervalTree.hpp:23, from libmaus2/util/GenericIntervalTree.cpp:20: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/util/GenericIntervalTree.cpp -o libmaus2/util/la-GenericIntervalTree.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/util/la-LookupIntervalTree.lo `test -f 'libmaus2/util/LookupIntervalTree.cpp' || echo './'`libmaus2/util/LookupIntervalTree.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/util/LookupIntervalTree.cpp -fPIC -DPIC -o libmaus2/util/.libs/la-LookupIntervalTree.o In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/util/IntervalTree.hpp:25, from ./libmaus2/util/LookupIntervalTree.hpp:22, from libmaus2/util/LookupIntervalTree.cpp:20: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/util/LookupIntervalTree.cpp -o libmaus2/util/la-LookupIntervalTree.o >/dev/null 2>&1 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-fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/util/Utf8BlockIndexDecoder.cpp -fPIC -DPIC -o libmaus2/util/.libs/la-Utf8BlockIndexDecoder.o libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/util/Utf8BlockIndexDecoder.cpp -o libmaus2/util/la-Utf8BlockIndexDecoder.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/util/la-Utf8BlockIndex.lo `test -f 'libmaus2/util/Utf8BlockIndex.cpp' || echo './'`libmaus2/util/Utf8BlockIndex.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/util/Utf8BlockIndex.cpp -fPIC -DPIC -o libmaus2/util/.libs/la-Utf8BlockIndex.o libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/util/Utf8BlockIndex.cpp -o libmaus2/util/la-Utf8BlockIndex.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/util/la-Utf8DecoderBuffer.lo `test -f 'libmaus2/util/Utf8DecoderBuffer.cpp' || echo './'`libmaus2/util/Utf8DecoderBuffer.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/util/Utf8DecoderBuffer.cpp -fPIC -DPIC -o libmaus2/util/.libs/la-Utf8DecoderBuffer.o libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/util/Utf8DecoderBuffer.cpp -o libmaus2/util/la-Utf8DecoderBuffer.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/util/la-Utf8DecoderWrapper.lo `test -f 'libmaus2/util/Utf8DecoderWrapper.cpp' || echo './'`libmaus2/util/Utf8DecoderWrapper.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/util/Utf8DecoderWrapper.cpp -fPIC -DPIC -o libmaus2/util/.libs/la-Utf8DecoderWrapper.o libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/util/Utf8DecoderWrapper.cpp -o libmaus2/util/la-Utf8DecoderWrapper.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/suffixtree/la-CompressedSuffixTree.lo `test -f 'libmaus2/suffixtree/CompressedSuffixTree.cpp' || echo './'`libmaus2/suffixtree/CompressedSuffixTree.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixtree/CompressedSuffixTree.cpp -fPIC -DPIC -o libmaus2/suffixtree/.libs/la-CompressedSuffixTree.o In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/huffman/HuffmanTree.hpp:25, from ./libmaus2/wavelet/ImpCompactHuffmanWaveletTree.hpp:26, from ./libmaus2/lf/ImpCompactHuffmanWaveletLF.hpp:23, from ./libmaus2/suffixtree/CompressedSuffixTree.hpp:22, from libmaus2/suffixtree/CompressedSuffixTree.cpp:19: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/huffman/huffman.hpp:183, from ./libmaus2/util/ImpCompactNumberArray.hpp:26, from ./libmaus2/rmq/RMMTree.hpp:22, from ./libmaus2/suffixtree/CompressedSuffixTree.hpp:26: ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 2]’: ./libmaus2/huffman/HuffmanSorting.hpp:860:55: required from here 860 | huffman::EncodeTable enctable ( root ); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:188: ./libmaus2/huffman/HuffmanSorting.hpp: In instantiation of ‘static void libmaus2::huffman::HuffmanSorting::uncompressHuffmanCoded(uint64_t*, uint64_t, uint64_t, uint64_t, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::HuffmanTreeNode*, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::EncodeTable&) [with unsigned int lookupwords = 2; uint64_t = long long unsigned int]’: ./libmaus2/huffman/HuffmanSorting.hpp:1091:27: required from here 1091 | uncompressHuffmanCoded(acode.get(), 0 /* bit offset */, lowhalf /* syms */, firsthighsym, enctable,dectable,root.get(),dectable0,dectable1,enctable0,enctable1); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/huffman/HuffmanSorting.hpp:534:42: warning: variable ‘alldecoffset’ set but not used [-Wunused-but-set-variable=] 534 | uint64_t alldecoffset = highdecoffset; | ^~~~~~~~~~~~ ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 1]’: ./libmaus2/wavelet/ImpHuffmanWaveletTree.hpp:302:54: required from here 302 | : n(rn), sroot(rsroot), dicts(numnodes), root(0), enctable(sroot.get()), maxdepth(0), nodepos(rnodepos) | ^~~~~~~~~~~~~~~~~~~~~ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixtree/CompressedSuffixTree.cpp -o libmaus2/suffixtree/la-CompressedSuffixTree.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/bambam/la-AlignmentValidity.lo `test -f 'libmaus2/bambam/AlignmentValidity.cpp' || echo './'`libmaus2/bambam/AlignmentValidity.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 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-fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/bambam/la-BamFlagBase.lo `test -f 'libmaus2/bambam/BamFlagBase.cpp' || echo './'`libmaus2/bambam/BamFlagBase.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/BamFlagBase.cpp -fPIC -DPIC -o libmaus2/bambam/.libs/la-BamFlagBase.o libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/BamFlagBase.cpp -o libmaus2/bambam/la-BamFlagBase.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/bambam/la-ReadGroup.lo `test -f 'libmaus2/bambam/ReadGroup.cpp' || echo './'`libmaus2/bambam/ReadGroup.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/ReadGroup.cpp -fPIC -DPIC -o libmaus2/bambam/.libs/la-ReadGroup.o libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/ReadGroup.cpp -o libmaus2/bambam/la-ReadGroup.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/bambam/la-DuplicationMetrics.lo `test -f 'libmaus2/bambam/DuplicationMetrics.cpp' || echo './'`libmaus2/bambam/DuplicationMetrics.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/DuplicationMetrics.cpp -fPIC -DPIC -o libmaus2/bambam/.libs/la-DuplicationMetrics.o libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/DuplicationMetrics.cpp -o libmaus2/bambam/la-DuplicationMetrics.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/bambam/la-BamDefaultAdapters.lo `test -f 'libmaus2/bambam/BamDefaultAdapters.cpp' || echo './'`libmaus2/bambam/BamDefaultAdapters.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/BamDefaultAdapters.cpp -fPIC -DPIC -o libmaus2/bambam/.libs/la-BamDefaultAdapters.o libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/BamDefaultAdapters.cpp -o libmaus2/bambam/la-BamDefaultAdapters.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/bambam/la-BamRange.lo `test -f 'libmaus2/bambam/BamRange.cpp' || echo './'`libmaus2/bambam/BamRange.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/BamRange.cpp -fPIC -DPIC -o libmaus2/bambam/.libs/la-BamRange.o In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/bambam/BamAuxFilterVector.hpp:22, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:27, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamRange.hpp:22, from libmaus2/bambam/BamRange.cpp:20: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/bambam/CigarStringParser.hpp:25, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/BamRange.cpp -o libmaus2/bambam/la-BamRange.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/bambam/la-BamIndexBinChunk.lo `test -f 'libmaus2/bambam/BamIndexBinChunk.cpp' || echo './'`libmaus2/bambam/BamIndexBinChunk.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/BamIndexBinChunk.cpp -fPIC -DPIC -o libmaus2/bambam/.libs/la-BamIndexBinChunk.o libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/BamIndexBinChunk.cpp -o libmaus2/bambam/la-BamIndexBinChunk.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/bambam/la-BamIndexLinearChunk.lo `test -f 'libmaus2/bambam/BamIndexLinearChunk.cpp' || echo './'`libmaus2/bambam/BamIndexLinearChunk.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/BamIndexLinearChunk.cpp -fPIC -DPIC -o libmaus2/bambam/.libs/la-BamIndexLinearChunk.o libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/BamIndexLinearChunk.cpp -o libmaus2/bambam/la-BamIndexLinearChunk.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/huffman/la-HuffmanTree.lo `test -f 'libmaus2/huffman/HuffmanTree.cpp' || echo './'`libmaus2/huffman/HuffmanTree.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/huffman/HuffmanTree.cpp -fPIC -DPIC -o libmaus2/huffman/.libs/la-HuffmanTree.o In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/huffman/HuffmanTree.hpp:25, from libmaus2/huffman/HuffmanTree.cpp:19: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/huffman/HuffmanTree.cpp -o libmaus2/huffman/la-HuffmanTree.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/bambam/la-BamAlignmentDecoderInfo.lo `test -f 'libmaus2/bambam/BamAlignmentDecoderInfo.cpp' || echo './'`libmaus2/bambam/BamAlignmentDecoderInfo.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/BamAlignmentDecoderInfo.cpp -fPIC -DPIC -o libmaus2/bambam/.libs/la-BamAlignmentDecoderInfo.o libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/BamAlignmentDecoderInfo.cpp -o libmaus2/bambam/la-BamAlignmentDecoderInfo.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 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libmaus2/bambam/.libs/la-BamStreamingMarkDuplicatesSupport.o In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/bambam/BamAuxFilterVector.hpp:22, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:27, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamStreamingMarkDuplicatesSupport.hpp:22, from libmaus2/bambam/BamStreamingMarkDuplicatesSupport.cpp:19: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/bambam/CigarStringParser.hpp:25, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ In file included from ./libmaus2/bambam/BamAlignmentDecoder.hpp:24, from ./libmaus2/bambam/BamStreamingMarkDuplicatesSupport.hpp:23: ./libmaus2/bambam/BamHeaderLowMem.hpp: In member function ‘void libmaus2::bambam::BamHeaderLowMem::setupFromText()’: ./libmaus2/bambam/BamHeaderLowMem.hpp:366:58: warning: variable ‘ln’ set but not used [-Wunused-but-set-variable=] 366 | uint64_t ln = 0; | ^~ libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/BamStreamingMarkDuplicatesSupport.cpp -o libmaus2/bambam/la-BamStreamingMarkDuplicatesSupport.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/alignment/la-FactorMatchInfo.lo `test -f 'libmaus2/alignment/FactorMatchInfo.cpp' || echo './'`libmaus2/alignment/FactorMatchInfo.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/alignment/FactorMatchInfo.cpp -fPIC -DPIC -o libmaus2/alignment/.libs/la-FactorMatchInfo.o libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/alignment/FactorMatchInfo.cpp -o libmaus2/alignment/la-FactorMatchInfo.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/alignment/la-KmerInfo.lo `test -f 'libmaus2/alignment/KmerInfo.cpp' || echo './'`libmaus2/alignment/KmerInfo.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat 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-fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/bambam/la-SamInfoBase.lo `test -f 'libmaus2/bambam/SamInfoBase.cpp' || echo './'`libmaus2/bambam/SamInfoBase.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/SamInfoBase.cpp -fPIC -DPIC -o libmaus2/bambam/.libs/la-SamInfoBase.o libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/SamInfoBase.cpp -o libmaus2/bambam/la-SamInfoBase.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/digest/la-SHA1.lo `test -f 'libmaus2/digest/SHA1.cpp' || echo './'`libmaus2/digest/SHA1.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/digest/SHA1.cpp -fPIC -DPIC -o libmaus2/digest/.libs/la-SHA1.o libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/digest/SHA1.cpp -o libmaus2/digest/la-SHA1.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/digest/la-SHA2_224.lo `test -f 'libmaus2/digest/SHA2_224.cpp' || echo './'`libmaus2/digest/SHA2_224.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/digest/SHA2_224.cpp -fPIC -DPIC -o libmaus2/digest/.libs/la-SHA2_224.o libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/digest/SHA2_224.cpp -o libmaus2/digest/la-SHA2_224.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/digest/la-SHA2_256.lo `test -f 'libmaus2/digest/SHA2_256.cpp' || echo './'`libmaus2/digest/SHA2_256.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/digest/SHA2_256.cpp -fPIC -DPIC -o libmaus2/digest/.libs/la-SHA2_256.o libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/digest/SHA2_256.cpp -o libmaus2/digest/la-SHA2_256.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/digest/la-SHA2_384.lo `test -f 'libmaus2/digest/SHA2_384.cpp' || echo './'`libmaus2/digest/SHA2_384.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/digest/SHA2_384.cpp -fPIC -DPIC -o libmaus2/digest/.libs/la-SHA2_384.o libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE 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-D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/digest/SHA2_512.cpp -fPIC -DPIC -o libmaus2/digest/.libs/la-SHA2_512.o libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/digest/SHA2_512.cpp -o libmaus2/digest/la-SHA2_512.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/digest/la-CRC32.lo `test -f 'libmaus2/digest/CRC32.cpp' || echo './'`libmaus2/digest/CRC32.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/digest/CRC32.cpp -fPIC -DPIC -o libmaus2/digest/.libs/la-CRC32.o libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. 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--mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/digest/la-CRC32C.lo `test -f 'libmaus2/digest/CRC32C.cpp' || echo './'`libmaus2/digest/CRC32C.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/digest/CRC32C.cpp -fPIC -DPIC -o libmaus2/digest/.libs/la-CRC32C.o libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/digest/CRC32C.cpp -o libmaus2/digest/la-CRC32C.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/digest/la-CRC32_Core.lo `test -f 'libmaus2/digest/CRC32_Core.cpp' || echo './'`libmaus2/digest/CRC32_Core.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/digest/CRC32_Core.cpp -fPIC -DPIC -o libmaus2/digest/.libs/la-CRC32_Core.o libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/digest/CRC32_Core.cpp -o libmaus2/digest/la-CRC32_Core.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/bambam/parallel/la-ValidationFragment.lo `test -f 'libmaus2/bambam/parallel/ValidationFragment.cpp' || echo './'`libmaus2/bambam/parallel/ValidationFragment.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/parallel/ValidationFragment.cpp -fPIC -DPIC -o libmaus2/bambam/parallel/.libs/la-ValidationFragment.o In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/bambam/BamAuxFilterVector.hpp:22, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:27, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/parallel/PushBackSpace.hpp:22, from ./libmaus2/bambam/parallel/AlignmentBuffer.hpp:22, from ./libmaus2/bambam/parallel/ValidationFragment.hpp:22, from libmaus2/bambam/parallel/ValidationFragment.cpp:19: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/bambam/CigarStringParser.hpp:25, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/parallel/ValidationFragment.cpp -o libmaus2/bambam/parallel/la-ValidationFragment.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/bambam/parallel/la-GenericInputControlStreamInfo.lo `test -f 'libmaus2/bambam/parallel/GenericInputControlStreamInfo.cpp' || echo './'`libmaus2/bambam/parallel/GenericInputControlStreamInfo.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/parallel/GenericInputControlStreamInfo.cpp -fPIC -DPIC -o libmaus2/bambam/parallel/.libs/la-GenericInputControlStreamInfo.o libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/parallel/GenericInputControlStreamInfo.cpp -o libmaus2/bambam/parallel/la-GenericInputControlStreamInfo.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/fastx/la-NameInfoBase.lo `test -f 'libmaus2/fastx/NameInfoBase.cpp' || echo './'`libmaus2/fastx/NameInfoBase.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/fastx/NameInfoBase.cpp -fPIC -DPIC -o libmaus2/fastx/.libs/la-NameInfoBase.o libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/fastx/NameInfoBase.cpp -o libmaus2/fastx/la-NameInfoBase.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/bambam/parallel/la-RefIdInterval.lo `test -f 'libmaus2/bambam/parallel/RefIdInterval.cpp' || echo './'`libmaus2/bambam/parallel/RefIdInterval.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/parallel/RefIdInterval.cpp -fPIC -DPIC -o libmaus2/bambam/parallel/.libs/la-RefIdInterval.o libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/parallel/RefIdInterval.cpp -o libmaus2/bambam/parallel/la-RefIdInterval.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/fastx/la-RefPathToken.lo `test -f 'libmaus2/fastx/RefPathToken.cpp' || echo './'`libmaus2/fastx/RefPathToken.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/fastx/RefPathToken.cpp -fPIC -DPIC -o libmaus2/fastx/.libs/la-RefPathToken.o libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/fastx/RefPathToken.cpp -o libmaus2/fastx/la-RefPathToken.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/fastx/la-RefPathTokenVector.lo `test -f 'libmaus2/fastx/RefPathTokenVector.cpp' || echo './'`libmaus2/fastx/RefPathTokenVector.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/fastx/RefPathTokenVector.cpp -fPIC -DPIC -o libmaus2/fastx/.libs/la-RefPathTokenVector.o libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/fastx/RefPathTokenVector.cpp -o libmaus2/fastx/la-RefPathTokenVector.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/dazzler/db/la-FastaInfo.lo `test -f 'libmaus2/dazzler/db/FastaInfo.cpp' || echo './'`libmaus2/dazzler/db/FastaInfo.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/dazzler/db/FastaInfo.cpp -fPIC -DPIC -o libmaus2/dazzler/db/.libs/la-FastaInfo.o libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/dazzler/db/FastaInfo.cpp -o libmaus2/dazzler/db/la-FastaInfo.o >/dev/null 2>&1 /bin/bash ../libtool 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-DPIC -o libmaus2/dazzler/db/.libs/la-IndexBase.o libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/dazzler/db/IndexBase.cpp -o libmaus2/dazzler/db/la-IndexBase.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/dazzler/db/la-DatabaseFile.lo `test -f 'libmaus2/dazzler/db/DatabaseFile.cpp' || echo './'`libmaus2/dazzler/db/DatabaseFile.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/dazzler/db/DatabaseFile.cpp -fPIC -DPIC -o libmaus2/dazzler/db/.libs/la-DatabaseFile.o libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/dazzler/db/DatabaseFile.cpp -o libmaus2/dazzler/db/la-DatabaseFile.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/dazzler/db/la-Read.lo `test -f 'libmaus2/dazzler/db/Read.cpp' || echo './'`libmaus2/dazzler/db/Read.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/dazzler/db/Read.cpp -fPIC -DPIC -o libmaus2/dazzler/db/.libs/la-Read.o libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/dazzler/db/Read.cpp -o libmaus2/dazzler/db/la-Read.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/dazzler/align/la-Path.lo `test -f 'libmaus2/dazzler/align/Path.cpp' || echo './'`libmaus2/dazzler/align/Path.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/dazzler/align/Path.cpp -fPIC -DPIC -o libmaus2/dazzler/align/.libs/la-Path.o libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/dazzler/align/Path.cpp -o libmaus2/dazzler/align/la-Path.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/dazzler/align/la-Overlap.lo `test -f 'libmaus2/dazzler/align/Overlap.cpp' || echo './'`libmaus2/dazzler/align/Overlap.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/dazzler/align/Overlap.cpp -fPIC -DPIC -o libmaus2/dazzler/align/.libs/la-Overlap.o In file included from ./libmaus2/lcs/Aligner.hpp:21, from ./libmaus2/dazzler/align/Overlap.hpp:22, from libmaus2/dazzler/align/Overlap.cpp:18: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/dazzler/align/Overlap.cpp -o libmaus2/dazzler/align/la-Overlap.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/lcs/la-AlignmentStatistics.lo `test -f 'libmaus2/lcs/AlignmentStatistics.cpp' || echo './'`libmaus2/lcs/AlignmentStatistics.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lcs/AlignmentStatistics.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/la-AlignmentStatistics.o libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lcs/AlignmentStatistics.cpp -o libmaus2/lcs/la-AlignmentStatistics.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/fastx/la-SingleWordDNABitBuffer.lo `test -f 'libmaus2/fastx/SingleWordDNABitBuffer.cpp' || echo './'`libmaus2/fastx/SingleWordDNABitBuffer.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/fastx/SingleWordDNABitBuffer.cpp -fPIC -DPIC -o libmaus2/fastx/.libs/la-SingleWordDNABitBuffer.o libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/fastx/SingleWordDNABitBuffer.cpp -o libmaus2/fastx/la-SingleWordDNABitBuffer.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/util/la-LongestIncreasingSubsequenceExtendedResult.lo `test -f 'libmaus2/util/LongestIncreasingSubsequenceExtendedResult.cpp' || echo './'`libmaus2/util/LongestIncreasingSubsequenceExtendedResult.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/util/LongestIncreasingSubsequenceExtendedResult.cpp -fPIC -DPIC -o libmaus2/util/.libs/la-LongestIncreasingSubsequenceExtendedResult.o libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/util/LongestIncreasingSubsequenceExtendedResult.cpp -o libmaus2/util/la-LongestIncreasingSubsequenceExtendedResult.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/lcs/la-AlignerFactory.lo `test -f 'libmaus2/lcs/AlignerFactory.cpp' || echo './'`libmaus2/lcs/AlignerFactory.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lcs/AlignerFactory.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/la-AlignerFactory.o In file included from ./libmaus2/lcs/Aligner.hpp:21, from ./libmaus2/lcs/AlignerFactory.hpp:21, from libmaus2/lcs/AlignerFactory.cpp:19: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lcs/AlignerFactory.cpp -o libmaus2/lcs/la-AlignerFactory.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/lcs/la-BandedAlignerFactory.lo `test -f 'libmaus2/lcs/BandedAlignerFactory.cpp' || echo './'`libmaus2/lcs/BandedAlignerFactory.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lcs/BandedAlignerFactory.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/la-BandedAlignerFactory.o In file included from ./libmaus2/lcs/BandedAligner.hpp:21, from ./libmaus2/lcs/BandedAlignerFactory.hpp:21, from libmaus2/lcs/BandedAlignerFactory.cpp:19: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lcs/BandedAlignerFactory.cpp -o libmaus2/lcs/la-BandedAlignerFactory.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/aio/la-InputStreamInstance.lo `test -f 'libmaus2/aio/InputStreamInstance.cpp' || echo './'`libmaus2/aio/InputStreamInstance.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/aio/InputStreamInstance.cpp -fPIC -DPIC -o libmaus2/aio/.libs/la-InputStreamInstance.o libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/aio/InputStreamInstance.cpp -o libmaus2/aio/la-InputStreamInstance.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/aio/la-OutputStreamInstance.lo `test -f 'libmaus2/aio/OutputStreamInstance.cpp' || echo './'`libmaus2/aio/OutputStreamInstance.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/aio/OutputStreamInstance.cpp -fPIC -DPIC -o libmaus2/aio/.libs/la-OutputStreamInstance.o libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/aio/OutputStreamInstance.cpp -o libmaus2/aio/la-OutputStreamInstance.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/aio/la-OutputStreamFactoryContainer.lo `test -f 'libmaus2/aio/OutputStreamFactoryContainer.cpp' || echo './'`libmaus2/aio/OutputStreamFactoryContainer.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/aio/OutputStreamFactoryContainer.cpp -fPIC -DPIC -o libmaus2/aio/.libs/la-OutputStreamFactoryContainer.o libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/aio/OutputStreamFactoryContainer.cpp -o libmaus2/aio/la-OutputStreamFactoryContainer.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/dazzler/align/la-TraceBlock.lo `test -f 'libmaus2/dazzler/align/TraceBlock.cpp' || echo './'`libmaus2/dazzler/align/TraceBlock.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/dazzler/align/TraceBlock.cpp -fPIC -DPIC -o libmaus2/dazzler/align/.libs/la-TraceBlock.o libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/dazzler/align/TraceBlock.cpp -o libmaus2/dazzler/align/la-TraceBlock.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/dazzler/align/la-ApproximateRun.lo `test -f 'libmaus2/dazzler/align/ApproximateRun.cpp' || echo './'`libmaus2/dazzler/align/ApproximateRun.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/dazzler/align/ApproximateRun.cpp -fPIC -DPIC -o libmaus2/dazzler/align/.libs/la-ApproximateRun.o libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/dazzler/align/ApproximateRun.cpp -o libmaus2/dazzler/align/la-ApproximateRun.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/suffixsort/la-BwtMergeBlockSortRequest.lo `test -f 'libmaus2/suffixsort/BwtMergeBlockSortRequest.cpp' || echo './'`libmaus2/suffixsort/BwtMergeBlockSortRequest.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/BwtMergeBlockSortRequest.cpp -fPIC -DPIC -o libmaus2/suffixsort/.libs/la-BwtMergeBlockSortRequest.o In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/huffman/HuffmanTree.hpp:25, from ./libmaus2/suffixsort/BwtMergeBlockSortRequest.hpp:23, from libmaus2/suffixsort/BwtMergeBlockSortRequest.cpp:19: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/suffixsort/BwtMergeTempFileNameSet.hpp:27, from ./libmaus2/suffixsort/BwtMergeBlockSortResult.hpp:22, from ./libmaus2/suffixsort/BwtMergeBlockSortRequest.hpp:30: ./libmaus2/util/DirectoryStructure.hpp: In member function ‘std::string libmaus2::util::DirectoryStructure::printGenerate(std::ostream&, std::string, uint64_t) const’: ./libmaus2/util/DirectoryStructure.hpp:207:58: warning: variable ‘batchcnt’ set but not used [-Wunused-but-set-variable=] 207 | uint64_t batchcnt = 0; | ^~~~~~~~ ./libmaus2/util/DirectoryStructure.hpp: In member function ‘std::string libmaus2::util::DirectoryStructure::printRemove(std::ostream&, std::string, uint64_t) const’: ./libmaus2/util/DirectoryStructure.hpp:282:58: warning: variable ‘batchcnt’ set but not used [-Wunused-but-set-variable=] 282 | uint64_t batchcnt = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:183, from ./libmaus2/suffixsort/BwtMergeBlockSortRequest.hpp:24: ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 2]’: ./libmaus2/huffman/HuffmanSorting.hpp:860:55: required from here 860 | huffman::EncodeTable enctable ( root ); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:188: ./libmaus2/huffman/HuffmanSorting.hpp: In instantiation of ‘static void libmaus2::huffman::HuffmanSorting::uncompressHuffmanCoded(uint64_t*, uint64_t, uint64_t, uint64_t, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::HuffmanTreeNode*, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::EncodeTable&) [with unsigned int lookupwords = 2; uint64_t = long long unsigned int]’: ./libmaus2/huffman/HuffmanSorting.hpp:1091:27: required from here 1091 | uncompressHuffmanCoded(acode.get(), 0 /* bit offset */, lowhalf /* syms */, firsthighsym, enctable,dectable,root.get(),dectable0,dectable1,enctable0,enctable1); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/huffman/HuffmanSorting.hpp:534:42: warning: variable ‘alldecoffset’ set but not used [-Wunused-but-set-variable=] 534 | uint64_t alldecoffset = highdecoffset; | ^~~~~~~~~~~~ ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 1]’: ./libmaus2/huffman/CanonicalEncoder.hpp:219:116: required from here 219 | return ::libmaus2::huffman::EncodeTable<1>::unique_ptr_type(new ::libmaus2::huffman::EncodeTable<1>(Ptree.get())); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/BwtMergeBlockSortRequest.cpp -o libmaus2/suffixsort/la-BwtMergeBlockSortRequest.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/dazzler/align/la-OverlapMeta.lo `test -f 'libmaus2/dazzler/align/OverlapMeta.cpp' || echo './'`libmaus2/dazzler/align/OverlapMeta.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/dazzler/align/OverlapMeta.cpp -fPIC -DPIC -o libmaus2/dazzler/align/.libs/la-OverlapMeta.o In file included from ./libmaus2/lcs/Aligner.hpp:21, from ./libmaus2/dazzler/align/Overlap.hpp:22, from ./libmaus2/dazzler/align/OverlapMeta.hpp:21, from libmaus2/dazzler/align/OverlapMeta.cpp:18: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/dazzler/align/OverlapMeta.cpp -o libmaus2/dazzler/align/la-OverlapMeta.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/dazzler/align/la-Tandem.lo `test -f 'libmaus2/dazzler/align/Tandem.cpp' || echo './'`libmaus2/dazzler/align/Tandem.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/dazzler/align/Tandem.cpp -fPIC -DPIC -o libmaus2/dazzler/align/.libs/la-Tandem.o In file included from ./libmaus2/lcs/Aligner.hpp:21, from ./libmaus2/dazzler/align/Overlap.hpp:22, from ./libmaus2/dazzler/align/OverlapMeta.hpp:21, from ./libmaus2/dazzler/align/Tandem.hpp:21, from libmaus2/dazzler/align/Tandem.cpp:19: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/dazzler/align/Tandem.cpp -o libmaus2/dazzler/align/la-Tandem.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/dazzler/align/la-TandemVector.lo `test -f 'libmaus2/dazzler/align/TandemVector.cpp' || echo './'`libmaus2/dazzler/align/TandemVector.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/dazzler/align/TandemVector.cpp -fPIC -DPIC -o libmaus2/dazzler/align/.libs/la-TandemVector.o In file included from ./libmaus2/lcs/Aligner.hpp:21, from ./libmaus2/dazzler/align/Overlap.hpp:22, from ./libmaus2/dazzler/align/OverlapMeta.hpp:21, from ./libmaus2/dazzler/align/Tandem.hpp:21, from ./libmaus2/dazzler/align/TandemVector.hpp:21, from libmaus2/dazzler/align/TandemVector.cpp:18: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/dazzler/align/TandemVector.cpp -o libmaus2/dazzler/align/la-TandemVector.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/math/la-GmpInteger.lo `test -f 'libmaus2/math/GmpInteger.cpp' || echo './'`libmaus2/math/GmpInteger.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/math/GmpInteger.cpp -fPIC -DPIC -o libmaus2/math/.libs/la-GmpInteger.o libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/math/GmpInteger.cpp -o libmaus2/math/la-GmpInteger.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/math/la-GmpFloat.lo `test -f 'libmaus2/math/GmpFloat.cpp' || echo './'`libmaus2/math/GmpFloat.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/math/GmpFloat.cpp -fPIC -DPIC -o libmaus2/math/.libs/la-GmpFloat.o libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/math/GmpFloat.cpp -o libmaus2/math/la-GmpFloat.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/dazzler/align/la-TracePoint.lo `test -f 'libmaus2/dazzler/align/TracePoint.cpp' || echo './'`libmaus2/dazzler/align/TracePoint.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/dazzler/align/TracePoint.cpp -fPIC -DPIC -o libmaus2/dazzler/align/.libs/la-TracePoint.o libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/dazzler/align/TracePoint.cpp -o libmaus2/dazzler/align/la-TracePoint.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/lz/la-XzDecoder.lo `test -f 'libmaus2/lz/XzDecoder.cpp' || echo './'`libmaus2/lz/XzDecoder.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE 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-D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/rank/DNARankBiDirRange.cpp -o libmaus2/rank/la-DNARankBiDirRange.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/lcs/la-NNPTraceElement.lo `test -f 'libmaus2/lcs/NNPTraceElement.cpp' || echo './'`libmaus2/lcs/NNPTraceElement.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lcs/NNPTraceElement.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/la-NNPTraceElement.o libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lcs/NNPTraceElement.cpp -o libmaus2/lcs/la-NNPTraceElement.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/lcs/la-NNPTraceContainer.lo `test -f 'libmaus2/lcs/NNPTraceContainer.cpp' || echo './'`libmaus2/lcs/NNPTraceContainer.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lcs/NNPTraceContainer.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/la-NNPTraceContainer.o In file included from ./libmaus2/lcs/NNPTraceContainer.hpp:23, from libmaus2/lcs/NNPTraceContainer.cpp:18: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lcs/NNPTraceContainer.cpp -o libmaus2/lcs/la-NNPTraceContainer.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/lcs/la-NNPAlignResult.lo `test -f 'libmaus2/lcs/NNPAlignResult.cpp' || echo './'`libmaus2/lcs/NNPAlignResult.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lcs/NNPAlignResult.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/la-NNPAlignResult.o libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lcs/NNPAlignResult.cpp -o libmaus2/lcs/la-NNPAlignResult.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/suffixsort/bwtb3m/la-MergeStrategyMergeGapRequest.lo `test -f 'libmaus2/suffixsort/bwtb3m/MergeStrategyMergeGapRequest.cpp' || echo './'`libmaus2/suffixsort/bwtb3m/MergeStrategyMergeGapRequest.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/MergeStrategyMergeGapRequest.cpp -fPIC -DPIC -o libmaus2/suffixsort/bwtb3m/.libs/la-MergeStrategyMergeGapRequest.o In file included from ./libmaus2/suffixsort/BwtMergeTempFileNameSet.hpp:27, from ./libmaus2/suffixsort/BwtMergeBlockSortResult.hpp:22, from ./libmaus2/suffixsort/bwtb3m/MergeStrategyBlock.hpp:23, from ./libmaus2/suffixsort/bwtb3m/MergeStrategyMergeGapRequest.hpp:23, from libmaus2/suffixsort/bwtb3m/MergeStrategyMergeGapRequest.cpp:18: ./libmaus2/util/DirectoryStructure.hpp: In member function ‘std::string libmaus2::util::DirectoryStructure::printGenerate(std::ostream&, std::string, uint64_t) const’: ./libmaus2/util/DirectoryStructure.hpp:207:58: warning: variable ‘batchcnt’ set but not used [-Wunused-but-set-variable=] 207 | uint64_t batchcnt = 0; | ^~~~~~~~ ./libmaus2/util/DirectoryStructure.hpp: In member function ‘std::string libmaus2::util::DirectoryStructure::printRemove(std::ostream&, std::string, uint64_t) const’: ./libmaus2/util/DirectoryStructure.hpp:282:58: warning: variable ‘batchcnt’ set but not used [-Wunused-but-set-variable=] 282 | uint64_t batchcnt = 0; | ^~~~~~~~ libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/MergeStrategyMergeGapRequest.cpp -o libmaus2/suffixsort/bwtb3m/la-MergeStrategyMergeGapRequest.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/suffixsort/bwtb3m/la-BwtMergeSort.lo `test -f 'libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp' || echo './'`libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp -fPIC -DPIC -o libmaus2/suffixsort/bwtb3m/.libs/la-BwtMergeSort.o In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/util/IntervalTree.hpp:25, from ./libmaus2/gamma/GammaRLDecoder.hpp:28, from ./libmaus2/gamma/GammaRLEncoder.hpp:29, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:24, from ./libmaus2/suffixsort/bwtb3m/BwtMergeComputeSampledSA.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/suffixsort/bwtb3m/GapArrayWrapper.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeIsaParallelBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:24: ./libmaus2/util/AtomicArray.hpp: At global scope: ./libmaus2/util/AtomicArray.hpp:45:43: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 45 | AtomicArray(AtomicArray const & O) = delete; | ^~~~~~~~~~~~~~~~~ ./libmaus2/util/AtomicArray.hpp:45:43: note: remove the ‘< >’ In file included from ./libmaus2/suffixsort/bwtb3m/BwtMergeIsaParallelBase.hpp:24: ./libmaus2/suffixsort/GapArrayByte.hpp: In member function ‘void libmaus2::suffixsort::GapArrayByte::flush()’: ./libmaus2/suffixsort/GapArrayByte.hpp:134:42: warning: variable ‘overflowcnt’ set but not used [-Wunused-but-set-variable=] 134 | uint64_t overflowcnt = 0; | ^~~~~~~~~~~ In file included from ./libmaus2/suffixsort/BwtMergeTempFileNameSet.hpp:27, from ./libmaus2/suffixsort/BwtMergeBlockSortResult.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:33: ./libmaus2/util/DirectoryStructure.hpp: In member function ‘std::string libmaus2::util::DirectoryStructure::printGenerate(std::ostream&, std::string, uint64_t) const’: ./libmaus2/util/DirectoryStructure.hpp:207:58: warning: variable ‘batchcnt’ set but not used [-Wunused-but-set-variable=] 207 | uint64_t batchcnt = 0; | ^~~~~~~~ ./libmaus2/util/DirectoryStructure.hpp: In member function ‘std::string libmaus2::util::DirectoryStructure::printRemove(std::ostream&, std::string, uint64_t) const’: ./libmaus2/util/DirectoryStructure.hpp:282:58: warning: variable ‘batchcnt’ set but not used [-Wunused-but-set-variable=] 282 | uint64_t batchcnt = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:183, from ./libmaus2/huffman/CanonicalEncoder.hpp:26, from ./libmaus2/huffman/RLEncoder.hpp:25, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22: ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 2]’: ./libmaus2/huffman/HuffmanSorting.hpp:860:55: required from here 860 | huffman::EncodeTable enctable ( root ); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:188: ./libmaus2/huffman/HuffmanSorting.hpp: In instantiation of ‘static void libmaus2::huffman::HuffmanSorting::uncompressHuffmanCoded(uint64_t*, uint64_t, uint64_t, uint64_t, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::HuffmanTreeNode*, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::EncodeTable&) [with unsigned int lookupwords = 2; uint64_t = long long unsigned int]’: ./libmaus2/huffman/HuffmanSorting.hpp:1091:27: required from here 1091 | uncompressHuffmanCoded(acode.get(), 0 /* bit offset */, lowhalf /* syms */, firsthighsym, enctable,dectable,root.get(),dectable0,dectable1,enctable0,enctable1); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/huffman/HuffmanSorting.hpp:534:42: warning: variable ‘alldecoffset’ set but not used [-Wunused-but-set-variable=] 534 | uint64_t alldecoffset = highdecoffset; | ^~~~~~~~~~~~ ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 1]’: ./libmaus2/huffman/CanonicalEncoder.hpp:219:116: required from here 219 | return ::libmaus2::huffman::EncodeTable<1>::unique_ptr_type(new ::libmaus2::huffman::EncodeTable<1>(Ptree.get())); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/wavelet/RlToHwtBase.hpp:30, from ./libmaus2/wavelet/RlToHwtTermRequest.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:44: ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp: In instantiation of ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTree(libmaus2::autoarray::AutoArray&, const std::string&, const std::string&, const libmaus2::huffman::HuffmanTree*, uint64_t) [with bool radixsort = true; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’: ./libmaus2/suffixsort/BwtMergeBlockSortRequest.hpp:862:90: required from ‘libmaus2::suffixsort::BwtMergeBlockSortResult libmaus2::suffixsort::BwtMergeBlockSortRequest::sortBlock(std::ostream*) const [with input_types_type = libmaus2::suffixsort::ByteInputTypes<32>; rl_encoder = libmaus2::huffman::RLEncoderTemplate, libmaus2::bitio::FastWriteBitWriterTemplate >, 128, 255, false> > >; std::ostream = std::basic_ostream]’ 862 | ::libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTree( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 863 | UT,tmpfilenames.getHWT(),tmpfileprefix,uhnode.get(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 864 | 1/* num threads */ | ~~~~~~~~~~~~~~~~~~ 865 | ); | ~ ./libmaus2/suffixsort/BwtMergeBlockSortRequest.hpp:979:79: required from ‘std::string libmaus2::suffixsort::BwtMergeBlockSortRequest::dispatch(std::ostream*) const [with rl_encoder = libmaus2::huffman::RLEncoderTemplate, libmaus2::bitio::FastWriteBitWriterTemplate >, 128, 255, false> > >; std::string = std::__cxx11::basic_string; std::ostream = std::basic_ostream]’ 979 | result = sortBlock,rl_encoder>(logstr); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BaseBlockSortThread.hpp:128:118: required from here 128 | block->sortresult = ::libmaus2::suffixsort::BwtMergeBlockSortResult::load(block->sortreq.dispatch(logstr)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:874:90: warning: variable ‘l_numsyms0’ set but not used [-Wunused-but-set-variable=] 874 | uint64_t l_numsyms0 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:879:90: warning: variable ‘r_numsyms1’ set but not used [-Wunused-but-set-variable=] 879 | uint64_t r_numsyms1 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:755:66: warning: variable ‘numsyms1’ set but not used [-Wunused-but-set-variable=] 755 | uint64_t numsyms1 = 0; | ^~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp: In instantiation of ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRl(const std::string&, const std::string&, const std::string&, const libmaus2::huffman::HuffmanTree&, uint64_t, uint64_t) [with rl_decoder = libmaus2::huffman::RLDecoder; bool radixsort = true; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1368:123: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwt(const std::string&, const std::string&, std::string, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’ 1368 | ::libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRl( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 1369 | bwt,hwt,tmpprefix,H, | ~~~~~~~~~~~~~~~~~~~~ 1370 | utf8WaveletMaxPartMem() /* part size maximum */, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1371 | utf8WaveletMaxThreads()); | ~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:4191:65: required from ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeBwt(const libmaus2::suffixsort::bwtb3m::BwtMergeSortOptions&, std::ostream*) [with input_types_type = libmaus2::suffixsort::ByteInputTypes<32>; std::ostream = std::basic_ostream]’ 4191 | libmaus2::wavelet::RlToHwtBase::rlToHwt(options.outfn, outhwt, options.tmpfilenamebase+"_finalhwttmp",options.numthreads) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:27:122: required from ‘libmaus2::suffixsort::bwtb3m::BwtMergeSortResult computeBwtTemplate(const libmaus2::suffixsort::bwtb3m::BwtMergeSortOptions&, std::ostream*) [with unsigned int wordsize = 32; std::ostream = std::basic_ostream]’ 27 | return libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate >::computeBwt(options,logstr); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:71:32: required from here 71 | return computeBwtTemplate<32>(options,logstr); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1419:90: warning: variable ‘l_numsyms0’ set but not used [-Wunused-but-set-variable=] 1419 | uint64_t l_numsyms0 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1424:90: warning: variable ‘r_numsyms1’ set but not used [-Wunused-but-set-variable=] 1424 | uint64_t r_numsyms1 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1299:66: warning: variable ‘numsyms1’ set but not used [-Wunused-but-set-variable=] 1299 | uint64_t numsyms1 = 0; | ^~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp: In instantiation of ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRlWithTerm(const std::vector >&, const std::string&, const std::string&, const libmaus2::huffman::HuffmanTree&, uint64_t, uint64_t, uint64_t, uint64_t) [with rl_decoder = libmaus2::huffman::RLDecoder; bool radixsort = true; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1500:131: required from ‘static void libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtTerm(const std::vector >&, const std::string&, std::string, libmaus2::huffman::HuffmanTree&, uint64_t, uint64_t, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’ 1500 | ::libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRlWithTerm( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 1501 | bwt,hwt,tmpprefix,H,p0r,bwtterm, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1502 | utf8WaveletMaxPartMem() /* maximum part size */, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1503 | utf8WaveletMaxThreads() | ~~~~~~~~~~~~~~~~~~~~~~~ 1504 | ); | ~ ./libmaus2/wavelet/RlToHwtBase.hpp:1687:17: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtTerm(const std::vector >&, const std::string&, std::string, std::string, uint64_t, uint64_t, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’ 1687 | rlToHwtTerm(bwt,hwt,tmpprefix,H,bwtterm,p0r,numthreads); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/wavelet/RlToHwtTermRequest.hpp:118:67: required from ‘libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtTermRequest::dispatch() [with rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >]’ 118 | libmaus2::wavelet::RlToHwtBase::rlToHwtTerm(bwt,hwt,tmpprefix,huftreefilename,bwtterm,p0r,numthreads) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:926:102: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::ensureWaveletTreeGenerated(const libmaus2::suffixsort::BwtMergeBlockSortResult&, std::ostream*) [with input_types_type = libmaus2::suffixsort::ByteInputTypes<32>; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::ostream = std::basic_ostream]’ 926 | libmaus2::wavelet::ImpCompactHuffmanWaveletTree::unique_ptr_type ptr(ureq->dispatch()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:997:105: required from ‘static libmaus2::suffixsort::bwtb3m::GapArrayComputationResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeGapArray(libmaus2::util::TempFileNameGenerator&, const std::string&, uint64_t, uint64_t, uint64_t, uint64_t, uint64_t, const libmaus2::suffixsort::BwtMergeBlockSortResult&, const std::vector >&, libmaus2::lf::DArray*, const std::vector&, uint64_t, std::ostream*, int) [with input_types_type = libmaus2::suffixsort::ByteInputTypes<32>; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int; std::ostream = std::basic_ostream]’ 997 | ::libmaus2::wavelet::ImpCompactHuffmanWaveletTree::unique_ptr_type ICHWL(ensureWaveletTreeGenerated(blockresults,logstr)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:1161:28: required from ‘static libmaus2::suffixsort::bwtb3m::GapArrayComputationResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeGapArray(libmaus2::util::TempFileNameGenerator&, const std::string&, uint64_t, const libmaus2::suffixsort::bwtb3m::MergeStrategyMergeGapRequest&, const std::vector >&, libmaus2::lf::DArray*, uint64_t, std::ostream*, int) [with input_types_type = libmaus2::suffixsort::ByteInputTypes<32>; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int; std::ostream = std::basic_ostream]’ 1161 | return computeGapArray(gtmpgen,fn,fs,blockstart,cblocksize,nextblockstart,mergeprocrightend, | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1162 | blockresults,mergedgtname,accD,zblocks,numthreads,logstr,verbose); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:1960:61: required from ‘static void libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::mergeBlocks(libmaus2::util::TempFileNameGenerator&, libmaus2::suffixsort::bwtb3m::MergeStrategyMergeInternalBlock&, std::string, uint64_t, uint64_t, uint64_t, uint64_t, const std::map&, uint64_t, const std::string&, std::ostream*, int) [with input_types_type = libmaus2::suffixsort::ByteInputTypes<32>; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int; std::ostream = std::basic_ostream]’ 1960 | GapArrayComputationResult const GACR = computeGapArray( | ~~~~~~~~~~~~~~~^ 1961 | gtmpgen, | ~~~~~~~~ 1962 | fn,fs,*(mergereq.gaprequests[0]), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1963 | mergereq.children[1]->sortresult.getFiles().getGT(), // previous gt files | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1964 | // tmpfilenamebase + "_gparts", // new gt files | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1965 | accD.get(), | ~~~~~~~~~~~ 1966 | numthreads, | ~~~~~~~~~~~ 1967 | logstr, | ~~~~~~~ 1968 | verbose | ~~~~~~~ 1969 | ); | ~ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:4049:19: required from ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeBwt(const libmaus2::suffixsort::bwtb3m::BwtMergeSortOptions&, std::ostream*) [with input_types_type = libmaus2::suffixsort::ByteInputTypes<32>; std::ostream = std::basic_ostream]’ 4049 | mergeBlocks( | ~~~~~~~~~~~^ 4050 | *gtmpgen, | ~~~~~~~~~ 4051 | *(dynamic_cast(p)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 4052 | fn,state.getFS(), | ~~~~~~~~~~~~~~~~~ 4053 | rlencoderblocksize, | ~~~~~~~~~~~~~~~~~~~ 4054 | lfblockmult, | ~~~~~~~~~~~~ 4055 | options.numthreads, | ~~~~~~~~~~~~~~~~~~~ 4056 | chist,bwtterm, | ~~~~~~~~~~~~~~ 4057 | huftreefilename, | ~~~~~~~~~~~~~~~~ 4058 | logstr, | ~~~~~~~ 4059 | options.verbose | ~~~~~~~~~~~~~~~ 4060 | ); | ~ libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:27:122: required from ‘libmaus2::suffixsort::bwtb3m::BwtMergeSortResult computeBwtTemplate(const libmaus2::suffixsort::bwtb3m::BwtMergeSortOptions&, std::ostream*) [with unsigned int wordsize = 32; std::ostream = std::basic_ostream]’ 27 | return libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate >::computeBwt(options,logstr); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:71:32: required from here 71 | return computeBwtTemplate<32>(options,logstr); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:2048:90: warning: variable ‘l_numsyms0’ set but not used [-Wunused-but-set-variable=] 2048 | uint64_t l_numsyms0 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:2053:90: warning: variable ‘r_numsyms1’ set but not used [-Wunused-but-set-variable=] 2053 | uint64_t r_numsyms1 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1929:66: warning: variable ‘numsyms1’ set but not used [-Wunused-but-set-variable=] 1929 | uint64_t numsyms1 = 0; | ^~~~~~~~ libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp -o libmaus2/suffixsort/bwtb3m/la-BwtMergeSort.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/suffixsort/bwtb3m/la-BwtComputeSSA.lo `test -f 'libmaus2/suffixsort/bwtb3m/BwtComputeSSA.cpp' || echo './'`libmaus2/suffixsort/bwtb3m/BwtComputeSSA.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtComputeSSA.cpp -fPIC -DPIC -o libmaus2/suffixsort/bwtb3m/.libs/la-BwtComputeSSA.o libmaus2/suffixsort/bwtb3m/BwtComputeSSA.cpp: In static member function ‘static void libmaus2::suffixsort::bwtb3m::BwtComputeSSA::computeSSA(std::string, uint64_t, uint64_t, std::string, bool, uint64_t, uint64_t, uint64_t, std::ostream*, std::string, std::string)’: libmaus2/suffixsort/bwtb3m/BwtComputeSSA.cpp:576:26: warning: variable ‘bc’ set but not used [-Wunused-but-set-variable=] 576 | uint64_t bc = 0; | ^~ In file included from ./libmaus2/huffman/huffman.hpp:183, from ./libmaus2/huffman/CanonicalEncoder.hpp:26, from ./libmaus2/huffman/RLDecoder.hpp:27, from ./libmaus2/suffixsort/bwtb3m/BwtComputeSSA.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtComputeSSA.cpp:18: ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 2]’: ./libmaus2/huffman/HuffmanSorting.hpp:860:55: required from here 860 | huffman::EncodeTable enctable ( root ); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:188: ./libmaus2/huffman/HuffmanSorting.hpp: In instantiation of ‘static void libmaus2::huffman::HuffmanSorting::uncompressHuffmanCoded(uint64_t*, uint64_t, uint64_t, uint64_t, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::HuffmanTreeNode*, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::EncodeTable&) [with unsigned int lookupwords = 2; uint64_t = long long unsigned int]’: ./libmaus2/huffman/HuffmanSorting.hpp:1091:27: required from here 1091 | uncompressHuffmanCoded(acode.get(), 0 /* bit offset */, lowhalf /* syms */, firsthighsym, enctable,dectable,root.get(),dectable0,dectable1,enctable0,enctable1); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/huffman/HuffmanSorting.hpp:534:42: warning: variable ‘alldecoffset’ set but not used [-Wunused-but-set-variable=] 534 | uint64_t alldecoffset = highdecoffset; | ^~~~~~~~~~~~ ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 1]’: ./libmaus2/huffman/CanonicalEncoder.hpp:219:116: required from here 219 | return ::libmaus2::huffman::EncodeTable<1>::unique_ptr_type(new ::libmaus2::huffman::EncodeTable<1>(Ptree.get())); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtComputeSSA.cpp -o libmaus2/suffixsort/bwtb3m/la-BwtComputeSSA.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/fastx/la-FastAToCompact4BigBand.lo `test -f 'libmaus2/fastx/FastAToCompact4BigBand.cpp' || echo './'`libmaus2/fastx/FastAToCompact4BigBand.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/fastx/FastAToCompact4BigBand.cpp -fPIC -DPIC -o libmaus2/fastx/.libs/la-FastAToCompact4BigBand.o In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/util/IntervalTree.hpp:25, from ./libmaus2/fastx/FastInterval.hpp:25, from ./libmaus2/fastx/FastAReader.hpp:31, from ./libmaus2/fastx/StreamFastAReader.hpp:23, from libmaus2/fastx/FastAToCompact4BigBand.cpp:23: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/fastx/FastAToCompact4BigBand.cpp -o libmaus2/fastx/la-FastAToCompact4BigBand.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/suffixsort/bwtb3m/la-BwtMergeSortResult.lo `test -f 'libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.cpp' || echo './'`libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.cpp -fPIC -DPIC -o libmaus2/suffixsort/bwtb3m/.libs/la-BwtMergeSortResult.o In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/huffman/HuffmanTree.hpp:25, from ./libmaus2/wavelet/ImpCompactHuffmanWaveletTree.hpp:26, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.cpp:18: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/huffman/huffman.hpp:183, from ./libmaus2/huffman/CanonicalEncoder.hpp:26, from ./libmaus2/huffman/RLEncoder.hpp:25, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.hpp:25: ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 2]’: ./libmaus2/huffman/HuffmanSorting.hpp:860:55: required from here 860 | huffman::EncodeTable enctable ( root ); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:188: ./libmaus2/huffman/HuffmanSorting.hpp: In instantiation of ‘static void libmaus2::huffman::HuffmanSorting::uncompressHuffmanCoded(uint64_t*, uint64_t, uint64_t, uint64_t, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::HuffmanTreeNode*, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::EncodeTable&) [with unsigned int lookupwords = 2; uint64_t = long long unsigned int]’: ./libmaus2/huffman/HuffmanSorting.hpp:1091:27: required from here 1091 | uncompressHuffmanCoded(acode.get(), 0 /* bit offset */, lowhalf /* syms */, firsthighsym, enctable,dectable,root.get(),dectable0,dectable1,enctable0,enctable1); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/huffman/HuffmanSorting.hpp:534:42: warning: variable ‘alldecoffset’ set but not used [-Wunused-but-set-variable=] 534 | uint64_t alldecoffset = highdecoffset; | ^~~~~~~~~~~~ ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 1]’: ./libmaus2/huffman/CanonicalEncoder.hpp:219:116: required from here 219 | return ::libmaus2::huffman::EncodeTable<1>::unique_ptr_type(new ::libmaus2::huffman::EncodeTable<1>(Ptree.get())); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/wavelet/RlToHwtBase.hpp:30, from libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.cpp:19: ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp: In instantiation of ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRl(const std::string&, const std::string&, const std::string&, const libmaus2::huffman::HuffmanTree&, uint64_t, uint64_t) [with rl_decoder = libmaus2::huffman::RLDecoder; bool radixsort = true; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1368:123: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwt(const std::string&, const std::string&, std::string, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’ 1368 | ::libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRl( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 1369 | bwt,hwt,tmpprefix,H, | ~~~~~~~~~~~~~~~~~~~~ 1370 | utf8WaveletMaxPartMem() /* part size maximum */, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1371 | utf8WaveletMaxThreads()); | ~~~~~~~~~~~~~~~~~~~~~~~~ libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.cpp:136:60: required from here 136 | libmaus2::wavelet::RlToHwtBase::rlToHwt(bwtfn, outhwt, tmpfilenamebase+"_finalhwttmp",numthreads) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1419:90: warning: variable ‘l_numsyms0’ set but not used [-Wunused-but-set-variable=] 1419 | uint64_t l_numsyms0 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1424:90: warning: variable ‘r_numsyms1’ set but not used [-Wunused-but-set-variable=] 1424 | uint64_t r_numsyms1 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1299:66: warning: variable ‘numsyms1’ set but not used [-Wunused-but-set-variable=] 1299 | uint64_t numsyms1 = 0; | ^~~~~~~~ libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.cpp -o libmaus2/suffixsort/bwtb3m/la-BwtMergeSortResult.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/lz/la-ZlibInterface.lo `test -f 'libmaus2/lz/ZlibInterface.cpp' || echo './'`libmaus2/lz/ZlibInterface.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lz/ZlibInterface.cpp -fPIC -DPIC -o libmaus2/lz/.libs/la-ZlibInterface.o libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lz/ZlibInterface.cpp -o libmaus2/lz/la-ZlibInterface.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/suffixsort/bwtb3m/la-BwtSelectSSA.lo `test -f 'libmaus2/suffixsort/bwtb3m/BwtSelectSSA.cpp' || echo './'`libmaus2/suffixsort/bwtb3m/BwtSelectSSA.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtSelectSSA.cpp -fPIC -DPIC -o libmaus2/suffixsort/bwtb3m/.libs/la-BwtSelectSSA.o In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/util/IntervalTree.hpp:25, from ./libmaus2/aio/FileFragment.hpp:27, from ./libmaus2/sorting/PairFileSorting.hpp:27, from libmaus2/suffixsort/bwtb3m/BwtSelectSSA.cpp:21: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ libmaus2/suffixsort/bwtb3m/BwtSelectSSA.cpp: In static member function ‘static void libmaus2::suffixsort::bwtb3m::BwtSelectSSA::computeSSA(std::vector >, const std::string&, const std::string&, const std::string&, const std::vector >&, std::string, bool, uint64_t, uint64_t, uint64_t, uint64_t, std::ostream*)’: libmaus2/suffixsort/bwtb3m/BwtSelectSSA.cpp:639:26: warning: variable ‘bc’ set but not used [-Wunused-but-set-variable=] 639 | uint64_t bc = 0; | ^~ In file included from ./libmaus2/huffman/huffman.hpp:183, from ./libmaus2/huffman/CanonicalEncoder.hpp:26, from ./libmaus2/huffman/RLDecoder.hpp:27, from ./libmaus2/suffixsort/bwtb3m/BwtSelectSSA.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtSelectSSA.cpp:18: ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 2]’: ./libmaus2/huffman/HuffmanSorting.hpp:860:55: required from here 860 | huffman::EncodeTable enctable ( root ); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:188: ./libmaus2/huffman/HuffmanSorting.hpp: In instantiation of ‘static void libmaus2::huffman::HuffmanSorting::uncompressHuffmanCoded(uint64_t*, uint64_t, uint64_t, uint64_t, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::HuffmanTreeNode*, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::EncodeTable&) [with unsigned int lookupwords = 2; uint64_t = long long unsigned int]’: ./libmaus2/huffman/HuffmanSorting.hpp:1091:27: required from here 1091 | uncompressHuffmanCoded(acode.get(), 0 /* bit offset */, lowhalf /* syms */, firsthighsym, enctable,dectable,root.get(),dectable0,dectable1,enctable0,enctable1); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/huffman/HuffmanSorting.hpp:534:42: warning: variable ‘alldecoffset’ set but not used [-Wunused-but-set-variable=] 534 | uint64_t alldecoffset = highdecoffset; | ^~~~~~~~~~~~ ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 1]’: ./libmaus2/huffman/CanonicalEncoder.hpp:219:116: required from here 219 | return ::libmaus2::huffman::EncodeTable<1>::unique_ptr_type(new ::libmaus2::huffman::EncodeTable<1>(Ptree.get())); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtSelectSSA.cpp -o libmaus2/suffixsort/bwtb3m/la-BwtSelectSSA.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/aio/la-FileRemoval.lo `test -f 'libmaus2/aio/FileRemoval.cpp' || echo './'`libmaus2/aio/FileRemoval.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/aio/FileRemoval.cpp -fPIC -DPIC -o libmaus2/aio/.libs/la-FileRemoval.o libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/aio/FileRemoval.cpp -o libmaus2/aio/la-FileRemoval.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/rank/la-DNARankMEM.lo `test -f 'libmaus2/rank/DNARankMEM.cpp' || echo './'`libmaus2/rank/DNARankMEM.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/rank/DNARankMEM.cpp -fPIC -DPIC -o libmaus2/rank/.libs/la-DNARankMEM.o libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/rank/DNARankMEM.cpp -o libmaus2/rank/la-DNARankMEM.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/lcs/la-ChainAddQueueElement.lo `test -f 'libmaus2/lcs/ChainAddQueueElement.cpp' || echo './'`libmaus2/lcs/ChainAddQueueElement.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lcs/ChainAddQueueElement.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/la-ChainAddQueueElement.o libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lcs/ChainAddQueueElement.cpp -o libmaus2/lcs/la-ChainAddQueueElement.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/lcs/la-Chain.lo `test -f 'libmaus2/lcs/Chain.cpp' || echo './'`libmaus2/lcs/Chain.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lcs/Chain.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/la-Chain.o libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lcs/Chain.cpp -o libmaus2/lcs/la-Chain.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/lcs/la-ChainNode.lo `test -f 'libmaus2/lcs/ChainNode.cpp' || echo './'`libmaus2/lcs/ChainNode.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lcs/ChainNode.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/la-ChainNode.o libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lcs/ChainNode.cpp -o libmaus2/lcs/la-ChainNode.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/lcs/la-ChainNodeInfo.lo `test -f 'libmaus2/lcs/ChainNodeInfo.cpp' || echo './'`libmaus2/lcs/ChainNodeInfo.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lcs/ChainNodeInfo.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/la-ChainNodeInfo.o libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lcs/ChainNodeInfo.cpp -o libmaus2/lcs/la-ChainNodeInfo.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/lcs/la-ChainRemoveQueueElement.lo `test -f 'libmaus2/lcs/ChainRemoveQueueElement.cpp' || echo './'`libmaus2/lcs/ChainRemoveQueueElement.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lcs/ChainRemoveQueueElement.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/la-ChainRemoveQueueElement.o libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lcs/ChainRemoveQueueElement.cpp -o libmaus2/lcs/la-ChainRemoveQueueElement.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/lcs/la-ChainSplayTreeNode.lo `test -f 'libmaus2/lcs/ChainSplayTreeNode.cpp' || echo './'`libmaus2/lcs/ChainSplayTreeNode.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lcs/ChainSplayTreeNode.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/la-ChainSplayTreeNode.o libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lcs/ChainSplayTreeNode.cpp -o libmaus2/lcs/la-ChainSplayTreeNode.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/timing/la-RealTimeClock.lo `test -f 'libmaus2/timing/RealTimeClock.cpp' || echo './'`libmaus2/timing/RealTimeClock.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/timing/RealTimeClock.cpp -fPIC -DPIC -o libmaus2/timing/.libs/la-RealTimeClock.o libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/timing/RealTimeClock.cpp -o libmaus2/timing/la-RealTimeClock.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/aio/la-PosixFdOutputStreamFactory.lo `test -f 'libmaus2/aio/PosixFdOutputStreamFactory.cpp' || echo './'`libmaus2/aio/PosixFdOutputStreamFactory.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/aio/PosixFdOutputStreamFactory.cpp -fPIC -DPIC -o libmaus2/aio/.libs/la-PosixFdOutputStreamFactory.o libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/aio/PosixFdOutputStreamFactory.cpp -o libmaus2/aio/la-PosixFdOutputStreamFactory.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/dazzler/align/la-OverlapHeader.lo `test -f 'libmaus2/dazzler/align/OverlapHeader.cpp' || echo './'`libmaus2/dazzler/align/OverlapHeader.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/dazzler/align/OverlapHeader.cpp -fPIC -DPIC -o libmaus2/dazzler/align/.libs/la-OverlapHeader.o libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/dazzler/align/OverlapHeader.cpp -o libmaus2/dazzler/align/la-OverlapHeader.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/bambam/la-BamAlignment.lo `test -f 'libmaus2/bambam/BamAlignment.cpp' || echo './'`libmaus2/bambam/BamAlignment.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/BamAlignment.cpp -fPIC -DPIC -o libmaus2/bambam/.libs/la-BamAlignment.o In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/bambam/BamAuxFilterVector.hpp:22, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:27, from ./libmaus2/bambam/BamAlignment.hpp:24, from libmaus2/bambam/BamAlignment.cpp:18: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/bambam/CigarStringParser.hpp:25, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ libmaus2/bambam/BamAlignment.cpp: In member function ‘std::string libmaus2::bambam::BamAlignment::getReferenceRegionViaMd() const’: libmaus2/bambam/BamAlignment.cpp:98:17: warning: variable ‘refpos’ set but not used [-Wunused-but-set-variable=] 98 | int64_t refpos = 0; | ^~~~~~ libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/BamAlignment.cpp -o libmaus2/bambam/la-BamAlignment.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/suffixsort/bwtb3m/la-MergeStrategyMergeInput.lo `test -f 'libmaus2/suffixsort/bwtb3m/MergeStrategyMergeInput.cpp' || echo './'`libmaus2/suffixsort/bwtb3m/MergeStrategyMergeInput.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/MergeStrategyMergeInput.cpp -fPIC -DPIC -o libmaus2/suffixsort/bwtb3m/.libs/la-MergeStrategyMergeInput.o In file included from ./libmaus2/suffixsort/BwtMergeTempFileNameSet.hpp:27, from ./libmaus2/suffixsort/BwtMergeBlockSortResult.hpp:22, from ./libmaus2/suffixsort/bwtb3m/MergeStrategyBlock.hpp:23, from ./libmaus2/suffixsort/bwtb3m/MergeStrategyMergeInput.hpp:21, from libmaus2/suffixsort/bwtb3m/MergeStrategyMergeInput.cpp:18: ./libmaus2/util/DirectoryStructure.hpp: In member function ‘std::string libmaus2::util::DirectoryStructure::printGenerate(std::ostream&, std::string, uint64_t) const’: ./libmaus2/util/DirectoryStructure.hpp:207:58: warning: variable ‘batchcnt’ set but not used [-Wunused-but-set-variable=] 207 | uint64_t batchcnt = 0; | ^~~~~~~~ ./libmaus2/util/DirectoryStructure.hpp: In member function ‘std::string libmaus2::util::DirectoryStructure::printRemove(std::ostream&, std::string, uint64_t) const’: ./libmaus2/util/DirectoryStructure.hpp:282:58: warning: variable ‘batchcnt’ set but not used [-Wunused-but-set-variable=] 282 | uint64_t batchcnt = 0; | ^~~~~~~~ In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/huffman/HuffmanTree.hpp:25, from ./libmaus2/suffixsort/BwtMergeBlockSortRequest.hpp:23, from ./libmaus2/suffixsort/bwtb3m/MergeStrategyBaseBlock.hpp:22, from libmaus2/suffixsort/bwtb3m/MergeStrategyMergeInput.cpp:22: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/huffman/huffman.hpp:183, from ./libmaus2/suffixsort/BwtMergeBlockSortRequest.hpp:24: ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 2]’: ./libmaus2/huffman/HuffmanSorting.hpp:860:55: required from here 860 | huffman::EncodeTable enctable ( root ); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:188: ./libmaus2/huffman/HuffmanSorting.hpp: In instantiation of ‘static void libmaus2::huffman::HuffmanSorting::uncompressHuffmanCoded(uint64_t*, uint64_t, uint64_t, uint64_t, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::HuffmanTreeNode*, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::EncodeTable&) [with unsigned int lookupwords = 2; uint64_t = long long unsigned int]’: ./libmaus2/huffman/HuffmanSorting.hpp:1091:27: required from here 1091 | uncompressHuffmanCoded(acode.get(), 0 /* bit offset */, lowhalf /* syms */, firsthighsym, enctable,dectable,root.get(),dectable0,dectable1,enctable0,enctable1); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/huffman/HuffmanSorting.hpp:534:42: warning: variable ‘alldecoffset’ set but not used [-Wunused-but-set-variable=] 534 | uint64_t alldecoffset = highdecoffset; | ^~~~~~~~~~~~ ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 1]’: ./libmaus2/huffman/CanonicalEncoder.hpp:219:116: required from here 219 | return ::libmaus2::huffman::EncodeTable<1>::unique_ptr_type(new ::libmaus2::huffman::EncodeTable<1>(Ptree.get())); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/MergeStrategyMergeInput.cpp -o libmaus2/suffixsort/bwtb3m/la-MergeStrategyMergeInput.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/aio/la-InputOutputStreamInstance.lo `test -f 'libmaus2/aio/InputOutputStreamInstance.cpp' || echo './'`libmaus2/aio/InputOutputStreamInstance.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/aio/InputOutputStreamInstance.cpp -fPIC -DPIC -o libmaus2/aio/.libs/la-InputOutputStreamInstance.o libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/aio/InputOutputStreamInstance.cpp -o libmaus2/aio/la-InputOutputStreamInstance.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/dazzler/align/la-OverlapInfo.lo `test -f 'libmaus2/dazzler/align/OverlapInfo.cpp' || echo './'`libmaus2/dazzler/align/OverlapInfo.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/dazzler/align/OverlapInfo.cpp -fPIC -DPIC -o libmaus2/dazzler/align/.libs/la-OverlapInfo.o libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/dazzler/align/OverlapInfo.cpp -o libmaus2/dazzler/align/la-OverlapInfo.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/dazzler/align/la-OverlapDataInterface.lo `test -f 'libmaus2/dazzler/align/OverlapDataInterface.cpp' || echo './'`libmaus2/dazzler/align/OverlapDataInterface.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/dazzler/align/OverlapDataInterface.cpp -fPIC -DPIC -o libmaus2/dazzler/align/.libs/la-OverlapDataInterface.o In file included from ./libmaus2/lcs/Aligner.hpp:21, from ./libmaus2/dazzler/align/Overlap.hpp:22, from ./libmaus2/dazzler/align/OverlapData.hpp:23, from ./libmaus2/dazzler/align/OverlapDataInterface.hpp:21, from libmaus2/dazzler/align/OverlapDataInterface.cpp:18: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/dazzler/align/OverlapDataInterface.cpp -o libmaus2/dazzler/align/la-OverlapDataInterface.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/util/la-PathTools.lo `test -f 'libmaus2/util/PathTools.cpp' || echo './'`libmaus2/util/PathTools.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/util/PathTools.cpp -fPIC -DPIC -o libmaus2/util/.libs/la-PathTools.o libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/util/PathTools.cpp -o libmaus2/util/la-PathTools.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/aio/la-OFStreamOutputStreamFactory.lo `test -f 'libmaus2/aio/OFStreamOutputStreamFactory.cpp' || echo './'`libmaus2/aio/OFStreamOutputStreamFactory.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/aio/OFStreamOutputStreamFactory.cpp -fPIC -DPIC -o libmaus2/aio/.libs/la-OFStreamOutputStreamFactory.o libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/aio/OFStreamOutputStreamFactory.cpp -o libmaus2/aio/la-OFStreamOutputStreamFactory.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/aio/la-PosixFdInput.lo `test -f 'libmaus2/aio/PosixFdInput.cpp' || echo './'`libmaus2/aio/PosixFdInput.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/aio/PosixFdInput.cpp -fPIC -DPIC -o libmaus2/aio/.libs/la-PosixFdInput.o libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/aio/PosixFdInput.cpp -o libmaus2/aio/la-PosixFdInput.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/lz/la-BgzfDeflateHeaderFunctions.lo `test -f 'libmaus2/lz/BgzfDeflateHeaderFunctions.cpp' || echo './'`libmaus2/lz/BgzfDeflateHeaderFunctions.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lz/BgzfDeflateHeaderFunctions.cpp -fPIC -DPIC -o libmaus2/lz/.libs/la-BgzfDeflateHeaderFunctions.o libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lz/BgzfDeflateHeaderFunctions.cpp -o libmaus2/lz/la-BgzfDeflateHeaderFunctions.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/lz/la-BgzfDeflateZStreamBase.lo `test -f 'libmaus2/lz/BgzfDeflateZStreamBase.cpp' || echo './'`libmaus2/lz/BgzfDeflateZStreamBase.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lz/BgzfDeflateZStreamBase.cpp -fPIC -DPIC -o libmaus2/lz/.libs/la-BgzfDeflateZStreamBase.o libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lz/BgzfDeflateZStreamBase.cpp -o libmaus2/lz/la-BgzfDeflateZStreamBase.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/gtf/la-CDS.lo `test -f 'libmaus2/gtf/CDS.cpp' || echo './'`libmaus2/gtf/CDS.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/gtf/CDS.cpp -fPIC -DPIC -o libmaus2/gtf/.libs/la-CDS.o libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c 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libmaus2/gtf/la-ExonInfo.lo `test -f 'libmaus2/gtf/ExonInfo.cpp' || echo './'`libmaus2/gtf/ExonInfo.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/gtf/ExonInfo.cpp -fPIC -DPIC -o libmaus2/gtf/.libs/la-ExonInfo.o libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c 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-Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/gtf/la-ExonSubInfo.lo `test -f 'libmaus2/gtf/ExonSubInfo.cpp' || echo './'`libmaus2/gtf/ExonSubInfo.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/gtf/ExonSubInfo.cpp -fPIC -DPIC -o libmaus2/gtf/.libs/la-ExonSubInfo.o libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/gtf/ExonSubInfo.cpp -o libmaus2/gtf/la-ExonSubInfo.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/protein/la-Blosum62.lo `test -f 'libmaus2/protein/Blosum62.cpp' || echo './'`libmaus2/protein/Blosum62.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/protein/Blosum62.cpp -fPIC -DPIC -o libmaus2/protein/.libs/la-Blosum62.o libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/protein/Blosum62.cpp -o libmaus2/protein/la-Blosum62.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/protein/la-CodonMapper.lo `test -f 'libmaus2/protein/CodonMapper.cpp' || echo './'`libmaus2/protein/CodonMapper.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/protein/CodonMapper.cpp -fPIC -DPIC -o libmaus2/protein/.libs/la-CodonMapper.o libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/protein/CodonMapper.cpp -o libmaus2/protein/la-CodonMapper.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/bambam/la-ChecksumsFactory.lo `test -f 'libmaus2/bambam/ChecksumsFactory.cpp' || echo './'`libmaus2/bambam/ChecksumsFactory.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/ChecksumsFactory.cpp -fPIC -DPIC -o libmaus2/bambam/.libs/la-ChecksumsFactory.o In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/bambam/BamAuxFilterVector.hpp:22, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:27, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/ChecksumsInterface.hpp:22, from ./libmaus2/bambam/ChecksumsFactory.hpp:22, from libmaus2/bambam/ChecksumsFactory.cpp:20: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/bambam/CigarStringParser.hpp:25, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/ChecksumsFactory.cpp -o libmaus2/bambam/la-ChecksumsFactory.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/vcf/la-VCFSortEntry.lo `test -f 'libmaus2/vcf/VCFSortEntry.cpp' || echo './'`libmaus2/vcf/VCFSortEntry.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/vcf/VCFSortEntry.cpp -fPIC -DPIC -o libmaus2/vcf/.libs/la-VCFSortEntry.o libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/vcf/VCFSortEntry.cpp -o libmaus2/vcf/la-VCFSortEntry.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/network/la-CurlInitObject.lo `test -f 'libmaus2/network/CurlInitObject.cpp' || echo './'`libmaus2/network/CurlInitObject.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/network/CurlInitObject.cpp -fPIC -DPIC -o libmaus2/network/.libs/la-CurlInitObject.o libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include 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-Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/aio/SecrecyOutputStreamFactory.cpp -fPIC -DPIC -o libmaus2/aio/.libs/la-SecrecyOutputStreamFactory.o libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/aio/SecrecyOutputStreamFactory.cpp -o libmaus2/aio/la-SecrecyOutputStreamFactory.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=compile i686-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/bambam/la-Scram.lo `test -f 'libmaus2/bambam/Scram.c' || echo './'`libmaus2/bambam/Scram.c libtool: compile: i686-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/Scram.c -fPIC -DPIC -o libmaus2/bambam/.libs/la-Scram.o libtool: compile: i686-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/Scram.c -o libmaus2/bambam/la-Scram.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/bambam/parallel/la-ScramCramEncoding.lo `test -f 'libmaus2/bambam/parallel/ScramCramEncoding.cpp' || echo './'`libmaus2/bambam/parallel/ScramCramEncoding.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/parallel/ScramCramEncoding.cpp -fPIC -DPIC -o libmaus2/bambam/parallel/.libs/la-ScramCramEncoding.o libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/parallel/ScramCramEncoding.cpp -o libmaus2/bambam/parallel/la-ScramCramEncoding.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/parallel/threadpool/bgzf/la-BgzfDecompressContext.lo `test -f 'libmaus2/parallel/threadpool/bgzf/BgzfDecompressContext.cpp' || echo './'`libmaus2/parallel/threadpool/bgzf/BgzfDecompressContext.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/parallel/threadpool/bgzf/BgzfDecompressContext.cpp -fPIC -DPIC -o libmaus2/parallel/threadpool/bgzf/.libs/la-BgzfDecompressContext.o libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/parallel/threadpool/bgzf/BgzfDecompressContext.cpp -o libmaus2/parallel/threadpool/bgzf/la-BgzfDecompressContext.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/parallel/threadpool/bgzf/la-BgzfCompressContext.lo `test -f 'libmaus2/parallel/threadpool/bgzf/BgzfCompressContext.cpp' || echo './'`libmaus2/parallel/threadpool/bgzf/BgzfCompressContext.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/parallel/threadpool/bgzf/BgzfCompressContext.cpp -fPIC -DPIC -o libmaus2/parallel/threadpool/bgzf/.libs/la-BgzfCompressContext.o libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/parallel/threadpool/bgzf/BgzfCompressContext.cpp -o libmaus2/parallel/threadpool/bgzf/la-BgzfCompressContext.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/suffixsort/bwtb3m/la-BwtMergeIsaBase.lo `test -f 'libmaus2/suffixsort/bwtb3m/BwtMergeIsaBase.cpp' || echo './'`libmaus2/suffixsort/bwtb3m/BwtMergeIsaBase.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtMergeIsaBase.cpp -fPIC -DPIC -o libmaus2/suffixsort/bwtb3m/.libs/la-BwtMergeIsaBase.o libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtMergeIsaBase.cpp -o libmaus2/suffixsort/bwtb3m/la-BwtMergeIsaBase.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/suffixsort/bwtb3m/la-BwtMergeIsaParallelBase.lo `test -f 'libmaus2/suffixsort/bwtb3m/BwtMergeIsaParallelBase.cpp' || echo './'`libmaus2/suffixsort/bwtb3m/BwtMergeIsaParallelBase.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtMergeIsaParallelBase.cpp -fPIC -DPIC -o libmaus2/suffixsort/bwtb3m/.libs/la-BwtMergeIsaParallelBase.o In file included from ./libmaus2/suffixsort/bwtb3m/GapArrayWrapper.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeIsaParallelBase.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeIsaParallelBase.cpp:19: ./libmaus2/util/AtomicArray.hpp:45:43: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 45 | AtomicArray(AtomicArray const & O) = delete; | ^~~~~~~~~~~~~~~~~ ./libmaus2/util/AtomicArray.hpp:45:43: note: remove the ‘< >’ In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/util/IntervalTree.hpp:25, from ./libmaus2/huffman/GapDecoder.hpp:26, from ./libmaus2/huffman/GapEncoder.hpp:25, from ./libmaus2/suffixsort/GapArrayByte.hpp:25, from ./libmaus2/suffixsort/bwtb3m/BwtMergeIsaParallelBase.hpp:24: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ ./libmaus2/suffixsort/GapArrayByte.hpp: In member function ‘void libmaus2::suffixsort::GapArrayByte::flush()’: ./libmaus2/suffixsort/GapArrayByte.hpp:134:42: warning: variable ‘overflowcnt’ set but not used [-Wunused-but-set-variable=] 134 | uint64_t overflowcnt = 0; | ^~~~~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:183, from ./libmaus2/huffman/CanonicalEncoder.hpp:26, from ./libmaus2/huffman/GapEncoder.hpp:23: ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 2]’: ./libmaus2/huffman/HuffmanSorting.hpp:860:55: required from here 860 | huffman::EncodeTable enctable ( root ); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:188: ./libmaus2/huffman/HuffmanSorting.hpp: In instantiation of ‘static void libmaus2::huffman::HuffmanSorting::uncompressHuffmanCoded(uint64_t*, uint64_t, uint64_t, uint64_t, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::HuffmanTreeNode*, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::EncodeTable&) [with unsigned int lookupwords = 2; uint64_t = long long unsigned int]’: ./libmaus2/huffman/HuffmanSorting.hpp:1091:27: required from here 1091 | uncompressHuffmanCoded(acode.get(), 0 /* bit offset */, lowhalf /* syms */, firsthighsym, enctable,dectable,root.get(),dectable0,dectable1,enctable0,enctable1); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/huffman/HuffmanSorting.hpp:534:42: warning: variable ‘alldecoffset’ set but not used [-Wunused-but-set-variable=] 534 | uint64_t alldecoffset = highdecoffset; | ^~~~~~~~~~~~ ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 1]’: ./libmaus2/huffman/CanonicalEncoder.hpp:219:116: required from here 219 | return ::libmaus2::huffman::EncodeTable<1>::unique_ptr_type(new ::libmaus2::huffman::EncodeTable<1>(Ptree.get())); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtMergeIsaParallelBase.cpp -o libmaus2/suffixsort/bwtb3m/la-BwtMergeIsaParallelBase.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/suffixsort/bwtb3m/la-BwtMergeParallelGapFragMerge.lo `test -f 'libmaus2/suffixsort/bwtb3m/BwtMergeParallelGapFragMerge.cpp' || echo './'`libmaus2/suffixsort/bwtb3m/BwtMergeParallelGapFragMerge.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtMergeParallelGapFragMerge.cpp -fPIC -DPIC -o libmaus2/suffixsort/bwtb3m/.libs/la-BwtMergeParallelGapFragMerge.o In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/util/IntervalTree.hpp:25, from ./libmaus2/gamma/GammaRLDecoder.hpp:28, from ./libmaus2/gamma/GammaRLEncoder.hpp:29, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:24, from ./libmaus2/suffixsort/bwtb3m/BwtMergeParallelGapFragMerge.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeParallelGapFragMerge.cpp:19: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/huffman/huffman.hpp:183, from ./libmaus2/huffman/CanonicalEncoder.hpp:26, from ./libmaus2/huffman/RLEncoder.hpp:25, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22: ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 2]’: ./libmaus2/huffman/HuffmanSorting.hpp:860:55: required from here 860 | huffman::EncodeTable enctable ( root ); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:188: ./libmaus2/huffman/HuffmanSorting.hpp: In instantiation of ‘static void libmaus2::huffman::HuffmanSorting::uncompressHuffmanCoded(uint64_t*, uint64_t, uint64_t, uint64_t, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::HuffmanTreeNode*, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::EncodeTable&) [with unsigned int lookupwords = 2; uint64_t = long long unsigned int]’: ./libmaus2/huffman/HuffmanSorting.hpp:1091:27: required from here 1091 | uncompressHuffmanCoded(acode.get(), 0 /* bit offset */, lowhalf /* syms */, firsthighsym, enctable,dectable,root.get(),dectable0,dectable1,enctable0,enctable1); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/huffman/HuffmanSorting.hpp:534:42: warning: variable ‘alldecoffset’ set but not used [-Wunused-but-set-variable=] 534 | uint64_t alldecoffset = highdecoffset; | ^~~~~~~~~~~~ ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 1]’: ./libmaus2/huffman/CanonicalEncoder.hpp:219:116: required from here 219 | return ::libmaus2::huffman::EncodeTable<1>::unique_ptr_type(new ::libmaus2::huffman::EncodeTable<1>(Ptree.get())); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtMergeParallelGapFragMerge.cpp -o libmaus2/suffixsort/bwtb3m/la-BwtMergeParallelGapFragMerge.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplateByte32.lo `test -f 'libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateByte32.cpp' || echo './'`libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateByte32.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateByte32.cpp -fPIC -DPIC -o libmaus2/suffixsort/bwtb3m/.libs/la-BwtMergeSortTemplateByte32.o In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/util/IntervalTree.hpp:25, from ./libmaus2/gamma/GammaRLDecoder.hpp:28, from ./libmaus2/gamma/GammaRLEncoder.hpp:29, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:24, from ./libmaus2/suffixsort/bwtb3m/BwtMergeComputeSampledSA.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateByte32.cpp:20: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/suffixsort/bwtb3m/GapArrayWrapper.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeIsaParallelBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:24: ./libmaus2/util/AtomicArray.hpp: At global scope: ./libmaus2/util/AtomicArray.hpp:45:43: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 45 | AtomicArray(AtomicArray const & O) = delete; | ^~~~~~~~~~~~~~~~~ ./libmaus2/util/AtomicArray.hpp:45:43: note: remove the ‘< >’ In file included from ./libmaus2/suffixsort/bwtb3m/BwtMergeIsaParallelBase.hpp:24: ./libmaus2/suffixsort/GapArrayByte.hpp: In member function ‘void libmaus2::suffixsort::GapArrayByte::flush()’: ./libmaus2/suffixsort/GapArrayByte.hpp:134:42: warning: variable ‘overflowcnt’ set but not used [-Wunused-but-set-variable=] 134 | uint64_t overflowcnt = 0; | ^~~~~~~~~~~ In file included from ./libmaus2/suffixsort/BwtMergeTempFileNameSet.hpp:27, from ./libmaus2/suffixsort/BwtMergeBlockSortResult.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:33: ./libmaus2/util/DirectoryStructure.hpp: In member function ‘std::string libmaus2::util::DirectoryStructure::printGenerate(std::ostream&, std::string, uint64_t) const’: ./libmaus2/util/DirectoryStructure.hpp:207:58: warning: variable ‘batchcnt’ set but not used [-Wunused-but-set-variable=] 207 | uint64_t batchcnt = 0; | ^~~~~~~~ ./libmaus2/util/DirectoryStructure.hpp: In member function ‘std::string libmaus2::util::DirectoryStructure::printRemove(std::ostream&, std::string, uint64_t) const’: ./libmaus2/util/DirectoryStructure.hpp:282:58: warning: variable ‘batchcnt’ set but not used [-Wunused-but-set-variable=] 282 | uint64_t batchcnt = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:183, from ./libmaus2/huffman/CanonicalEncoder.hpp:26, from ./libmaus2/huffman/RLEncoder.hpp:25, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22: ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 2]’: ./libmaus2/huffman/HuffmanSorting.hpp:860:55: required from here 860 | huffman::EncodeTable enctable ( root ); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:188: ./libmaus2/huffman/HuffmanSorting.hpp: In instantiation of ‘static void libmaus2::huffman::HuffmanSorting::uncompressHuffmanCoded(uint64_t*, uint64_t, uint64_t, uint64_t, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::HuffmanTreeNode*, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::EncodeTable&) [with unsigned int lookupwords = 2; uint64_t = long long unsigned int]’: ./libmaus2/huffman/HuffmanSorting.hpp:1091:27: required from here 1091 | uncompressHuffmanCoded(acode.get(), 0 /* bit offset */, lowhalf /* syms */, firsthighsym, enctable,dectable,root.get(),dectable0,dectable1,enctable0,enctable1); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/huffman/HuffmanSorting.hpp:534:42: warning: variable ‘alldecoffset’ set but not used [-Wunused-but-set-variable=] 534 | uint64_t alldecoffset = highdecoffset; | ^~~~~~~~~~~~ ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 1]’: ./libmaus2/huffman/CanonicalEncoder.hpp:219:116: required from here 219 | return ::libmaus2::huffman::EncodeTable<1>::unique_ptr_type(new ::libmaus2::huffman::EncodeTable<1>(Ptree.get())); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/wavelet/RlToHwtBase.hpp:30, from ./libmaus2/wavelet/RlToHwtTermRequest.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:44: ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp: In instantiation of ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTree(libmaus2::autoarray::AutoArray&, const std::string&, const std::string&, const libmaus2::huffman::HuffmanTree*, uint64_t) [with bool radixsort = true; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’: ./libmaus2/suffixsort/BwtMergeBlockSortRequest.hpp:862:90: required from ‘libmaus2::suffixsort::BwtMergeBlockSortResult libmaus2::suffixsort::BwtMergeBlockSortRequest::sortBlock(std::ostream*) const [with input_types_type = libmaus2::suffixsort::ByteInputTypes<32>; rl_encoder = libmaus2::huffman::RLEncoderTemplate, libmaus2::bitio::FastWriteBitWriterTemplate >, 128, 255, false> > >; std::ostream = std::basic_ostream]’ 862 | ::libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTree( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 863 | UT,tmpfilenames.getHWT(),tmpfileprefix,uhnode.get(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 864 | 1/* num threads */ | ~~~~~~~~~~~~~~~~~~ 865 | ); | ~ ./libmaus2/suffixsort/BwtMergeBlockSortRequest.hpp:979:79: required from ‘std::string libmaus2::suffixsort::BwtMergeBlockSortRequest::dispatch(std::ostream*) const [with rl_encoder = libmaus2::huffman::RLEncoderTemplate, libmaus2::bitio::FastWriteBitWriterTemplate >, 128, 255, false> > >; std::string = std::__cxx11::basic_string; std::ostream = std::basic_ostream]’ 979 | result = sortBlock,rl_encoder>(logstr); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BaseBlockSortThread.hpp:128:118: required from here 128 | block->sortresult = ::libmaus2::suffixsort::BwtMergeBlockSortResult::load(block->sortreq.dispatch(logstr)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:874:90: warning: variable ‘l_numsyms0’ set but not used [-Wunused-but-set-variable=] 874 | uint64_t l_numsyms0 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:879:90: warning: variable ‘r_numsyms1’ set but not used [-Wunused-but-set-variable=] 879 | uint64_t r_numsyms1 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:755:66: warning: variable ‘numsyms1’ set but not used [-Wunused-but-set-variable=] 755 | uint64_t numsyms1 = 0; | ^~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp: In instantiation of ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRl(const std::string&, const std::string&, const std::string&, const libmaus2::huffman::HuffmanTree&, uint64_t, uint64_t) [with rl_decoder = libmaus2::huffman::RLDecoder; bool radixsort = true; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1368:123: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwt(const std::string&, const std::string&, std::string, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’ 1368 | ::libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRl( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 1369 | bwt,hwt,tmpprefix,H, | ~~~~~~~~~~~~~~~~~~~~ 1370 | utf8WaveletMaxPartMem() /* part size maximum */, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1371 | utf8WaveletMaxThreads()); | ~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:4191:65: required from ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeBwt(const libmaus2::suffixsort::bwtb3m::BwtMergeSortOptions&, std::ostream*) [with input_types_type = libmaus2::suffixsort::ByteInputTypes<32>; std::ostream = std::basic_ostream]’ 4191 | libmaus2::wavelet::RlToHwtBase::rlToHwt(options.outfn, outhwt, options.tmpfilenamebase+"_finalhwttmp",options.numthreads) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateByte32.cpp:22:47: required from here 22 | template struct libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate< libmaus2::suffixsort::ByteInputTypes<32> >; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1419:90: warning: variable ‘l_numsyms0’ set but not used [-Wunused-but-set-variable=] 1419 | uint64_t l_numsyms0 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1424:90: warning: variable ‘r_numsyms1’ set but not used [-Wunused-but-set-variable=] 1424 | uint64_t r_numsyms1 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1299:66: warning: variable ‘numsyms1’ set but not used [-Wunused-but-set-variable=] 1299 | uint64_t numsyms1 = 0; | ^~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp: In instantiation of ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRlWithTerm(const std::vector >&, const std::string&, const std::string&, const libmaus2::huffman::HuffmanTree&, uint64_t, uint64_t, uint64_t, uint64_t) [with rl_decoder = libmaus2::huffman::RLDecoder; bool radixsort = true; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1500:131: required from ‘static void libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtTerm(const std::vector >&, const std::string&, std::string, libmaus2::huffman::HuffmanTree&, uint64_t, uint64_t, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’ 1500 | ::libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRlWithTerm( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 1501 | bwt,hwt,tmpprefix,H,p0r,bwtterm, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1502 | utf8WaveletMaxPartMem() /* maximum part size */, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1503 | utf8WaveletMaxThreads() | ~~~~~~~~~~~~~~~~~~~~~~~ 1504 | ); | ~ ./libmaus2/wavelet/RlToHwtBase.hpp:1687:17: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtTerm(const std::vector >&, const std::string&, std::string, std::string, uint64_t, uint64_t, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’ 1687 | rlToHwtTerm(bwt,hwt,tmpprefix,H,bwtterm,p0r,numthreads); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/wavelet/RlToHwtTermRequest.hpp:118:67: required from ‘libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtTermRequest::dispatch() [with rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >]’ 118 | libmaus2::wavelet::RlToHwtBase::rlToHwtTerm(bwt,hwt,tmpprefix,huftreefilename,bwtterm,p0r,numthreads) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:926:102: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::ensureWaveletTreeGenerated(const libmaus2::suffixsort::BwtMergeBlockSortResult&, std::ostream*) [with input_types_type = libmaus2::suffixsort::ByteInputTypes<32>; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::ostream = std::basic_ostream]’ 926 | libmaus2::wavelet::ImpCompactHuffmanWaveletTree::unique_ptr_type ptr(ureq->dispatch()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~ libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateByte32.cpp:22:47: required from here 22 | template struct libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate< libmaus2::suffixsort::ByteInputTypes<32> >; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:2048:90: warning: variable ‘l_numsyms0’ set but not used [-Wunused-but-set-variable=] 2048 | uint64_t l_numsyms0 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:2053:90: warning: variable ‘r_numsyms1’ set but not used [-Wunused-but-set-variable=] 2053 | uint64_t r_numsyms1 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1929:66: warning: variable ‘numsyms1’ set but not used [-Wunused-but-set-variable=] 1929 | uint64_t numsyms1 = 0; | ^~~~~~~~ libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateByte32.cpp -o libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplateByte32.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplateLz432.lo `test -f 'libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateLz432.cpp' || echo './'`libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateLz432.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateLz432.cpp -fPIC -DPIC -o libmaus2/suffixsort/bwtb3m/.libs/la-BwtMergeSortTemplateLz432.o In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/util/IntervalTree.hpp:25, from ./libmaus2/gamma/GammaRLDecoder.hpp:28, from ./libmaus2/gamma/GammaRLEncoder.hpp:29, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:24, from ./libmaus2/suffixsort/bwtb3m/BwtMergeComputeSampledSA.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateLz432.cpp:20: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/suffixsort/bwtb3m/GapArrayWrapper.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeIsaParallelBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:24: ./libmaus2/util/AtomicArray.hpp: At global scope: ./libmaus2/util/AtomicArray.hpp:45:43: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 45 | AtomicArray(AtomicArray const & O) = delete; | ^~~~~~~~~~~~~~~~~ ./libmaus2/util/AtomicArray.hpp:45:43: note: remove the ‘< >’ In file included from ./libmaus2/suffixsort/bwtb3m/BwtMergeIsaParallelBase.hpp:24: ./libmaus2/suffixsort/GapArrayByte.hpp: In member function ‘void libmaus2::suffixsort::GapArrayByte::flush()’: ./libmaus2/suffixsort/GapArrayByte.hpp:134:42: warning: variable ‘overflowcnt’ set but not used [-Wunused-but-set-variable=] 134 | uint64_t overflowcnt = 0; | ^~~~~~~~~~~ In file included from ./libmaus2/suffixsort/BwtMergeTempFileNameSet.hpp:27, from ./libmaus2/suffixsort/BwtMergeBlockSortResult.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:33: ./libmaus2/util/DirectoryStructure.hpp: In member function ‘std::string libmaus2::util::DirectoryStructure::printGenerate(std::ostream&, std::string, uint64_t) const’: ./libmaus2/util/DirectoryStructure.hpp:207:58: warning: variable ‘batchcnt’ set but not used [-Wunused-but-set-variable=] 207 | uint64_t batchcnt = 0; | ^~~~~~~~ ./libmaus2/util/DirectoryStructure.hpp: In member function ‘std::string libmaus2::util::DirectoryStructure::printRemove(std::ostream&, std::string, uint64_t) const’: ./libmaus2/util/DirectoryStructure.hpp:282:58: warning: variable ‘batchcnt’ set but not used [-Wunused-but-set-variable=] 282 | uint64_t batchcnt = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:183, from ./libmaus2/huffman/CanonicalEncoder.hpp:26, from ./libmaus2/huffman/RLEncoder.hpp:25, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22: ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 2]’: ./libmaus2/huffman/HuffmanSorting.hpp:860:55: required from here 860 | huffman::EncodeTable enctable ( root ); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:188: ./libmaus2/huffman/HuffmanSorting.hpp: In instantiation of ‘static void libmaus2::huffman::HuffmanSorting::uncompressHuffmanCoded(uint64_t*, uint64_t, uint64_t, uint64_t, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::HuffmanTreeNode*, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::EncodeTable&) [with unsigned int lookupwords = 2; uint64_t = long long unsigned int]’: ./libmaus2/huffman/HuffmanSorting.hpp:1091:27: required from here 1091 | uncompressHuffmanCoded(acode.get(), 0 /* bit offset */, lowhalf /* syms */, firsthighsym, enctable,dectable,root.get(),dectable0,dectable1,enctable0,enctable1); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/huffman/HuffmanSorting.hpp:534:42: warning: variable ‘alldecoffset’ set but not used [-Wunused-but-set-variable=] 534 | uint64_t alldecoffset = highdecoffset; | ^~~~~~~~~~~~ ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 1]’: ./libmaus2/huffman/CanonicalEncoder.hpp:219:116: required from here 219 | return ::libmaus2::huffman::EncodeTable<1>::unique_ptr_type(new ::libmaus2::huffman::EncodeTable<1>(Ptree.get())); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/wavelet/RlToHwtBase.hpp:30, from ./libmaus2/wavelet/RlToHwtTermRequest.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:44: ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp: In instantiation of ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTree(libmaus2::autoarray::AutoArray&, const std::string&, const std::string&, const libmaus2::huffman::HuffmanTree*, uint64_t) [with bool radixsort = true; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’: ./libmaus2/suffixsort/BwtMergeBlockSortRequest.hpp:862:90: required from ‘libmaus2::suffixsort::BwtMergeBlockSortResult libmaus2::suffixsort::BwtMergeBlockSortRequest::sortBlock(std::ostream*) const [with input_types_type = libmaus2::suffixsort::ByteInputTypes<32>; rl_encoder = libmaus2::huffman::RLEncoderTemplate, libmaus2::bitio::FastWriteBitWriterTemplate >, 128, 255, false> > >; std::ostream = std::basic_ostream]’ 862 | ::libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTree( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 863 | UT,tmpfilenames.getHWT(),tmpfileprefix,uhnode.get(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 864 | 1/* num threads */ | ~~~~~~~~~~~~~~~~~~ 865 | ); | ~ ./libmaus2/suffixsort/BwtMergeBlockSortRequest.hpp:979:79: required from ‘std::string libmaus2::suffixsort::BwtMergeBlockSortRequest::dispatch(std::ostream*) const [with rl_encoder = libmaus2::huffman::RLEncoderTemplate, libmaus2::bitio::FastWriteBitWriterTemplate >, 128, 255, false> > >; std::string = std::__cxx11::basic_string; std::ostream = std::basic_ostream]’ 979 | result = sortBlock,rl_encoder>(logstr); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BaseBlockSortThread.hpp:128:118: required from here 128 | block->sortresult = ::libmaus2::suffixsort::BwtMergeBlockSortResult::load(block->sortreq.dispatch(logstr)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:874:90: warning: variable ‘l_numsyms0’ set but not used [-Wunused-but-set-variable=] 874 | uint64_t l_numsyms0 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:879:90: warning: variable ‘r_numsyms1’ set but not used [-Wunused-but-set-variable=] 879 | uint64_t r_numsyms1 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:755:66: warning: variable ‘numsyms1’ set but not used [-Wunused-but-set-variable=] 755 | uint64_t numsyms1 = 0; | ^~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp: In instantiation of ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRl(const std::string&, const std::string&, const std::string&, const libmaus2::huffman::HuffmanTree&, uint64_t, uint64_t) [with rl_decoder = libmaus2::huffman::RLDecoder; bool radixsort = true; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1368:123: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwt(const std::string&, const std::string&, std::string, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’ 1368 | ::libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRl( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 1369 | bwt,hwt,tmpprefix,H, | ~~~~~~~~~~~~~~~~~~~~ 1370 | utf8WaveletMaxPartMem() /* part size maximum */, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1371 | utf8WaveletMaxThreads()); | ~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:4191:65: required from ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeBwt(const libmaus2::suffixsort::bwtb3m::BwtMergeSortOptions&, std::ostream*) [with input_types_type = libmaus2::suffixsort::Lz4InputTypes<32>; std::ostream = std::basic_ostream]’ 4191 | libmaus2::wavelet::RlToHwtBase::rlToHwt(options.outfn, outhwt, options.tmpfilenamebase+"_finalhwttmp",options.numthreads) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateLz432.cpp:22:47: required from here 22 | template struct libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate< libmaus2::suffixsort::Lz4InputTypes<32> >; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1419:90: warning: variable ‘l_numsyms0’ set but not used [-Wunused-but-set-variable=] 1419 | uint64_t l_numsyms0 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1424:90: warning: variable ‘r_numsyms1’ set but not used [-Wunused-but-set-variable=] 1424 | uint64_t r_numsyms1 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1299:66: warning: variable ‘numsyms1’ set but not used [-Wunused-but-set-variable=] 1299 | uint64_t numsyms1 = 0; | ^~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp: In instantiation of ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRlWithTerm(const std::vector >&, const std::string&, const std::string&, const libmaus2::huffman::HuffmanTree&, uint64_t, uint64_t, uint64_t, uint64_t) [with rl_decoder = libmaus2::huffman::RLDecoder; bool radixsort = true; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1500:131: required from ‘static void libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtTerm(const std::vector >&, const std::string&, std::string, libmaus2::huffman::HuffmanTree&, uint64_t, uint64_t, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’ 1500 | ::libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRlWithTerm( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 1501 | bwt,hwt,tmpprefix,H,p0r,bwtterm, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1502 | utf8WaveletMaxPartMem() /* maximum part size */, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1503 | utf8WaveletMaxThreads() | ~~~~~~~~~~~~~~~~~~~~~~~ 1504 | ); | ~ ./libmaus2/wavelet/RlToHwtBase.hpp:1687:17: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtTerm(const std::vector >&, const std::string&, std::string, std::string, uint64_t, uint64_t, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’ 1687 | rlToHwtTerm(bwt,hwt,tmpprefix,H,bwtterm,p0r,numthreads); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/wavelet/RlToHwtTermRequest.hpp:118:67: required from ‘libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtTermRequest::dispatch() [with rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >]’ 118 | libmaus2::wavelet::RlToHwtBase::rlToHwtTerm(bwt,hwt,tmpprefix,huftreefilename,bwtterm,p0r,numthreads) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:926:102: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::ensureWaveletTreeGenerated(const libmaus2::suffixsort::BwtMergeBlockSortResult&, std::ostream*) [with input_types_type = libmaus2::suffixsort::Lz4InputTypes<32>; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::ostream = std::basic_ostream]’ 926 | libmaus2::wavelet::ImpCompactHuffmanWaveletTree::unique_ptr_type ptr(ureq->dispatch()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~ libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateLz432.cpp:22:47: required from here 22 | template struct libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate< libmaus2::suffixsort::Lz4InputTypes<32> >; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:2048:90: warning: variable ‘l_numsyms0’ set but not used [-Wunused-but-set-variable=] 2048 | uint64_t l_numsyms0 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:2053:90: warning: variable ‘r_numsyms1’ set but not used [-Wunused-but-set-variable=] 2053 | uint64_t r_numsyms1 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1929:66: warning: variable ‘numsyms1’ set but not used [-Wunused-but-set-variable=] 1929 | uint64_t numsyms1 = 0; | ^~~~~~~~ libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateLz432.cpp -o libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplateLz432.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplatePacTerm32.lo `test -f 'libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplatePacTerm32.cpp' || echo './'`libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplatePacTerm32.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplatePacTerm32.cpp -fPIC -DPIC -o libmaus2/suffixsort/bwtb3m/.libs/la-BwtMergeSortTemplatePacTerm32.o In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/util/IntervalTree.hpp:25, from ./libmaus2/gamma/GammaRLDecoder.hpp:28, from ./libmaus2/gamma/GammaRLEncoder.hpp:29, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:24, from ./libmaus2/suffixsort/bwtb3m/BwtMergeComputeSampledSA.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplatePacTerm32.cpp:20: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/suffixsort/bwtb3m/GapArrayWrapper.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeIsaParallelBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:24: ./libmaus2/util/AtomicArray.hpp: At global scope: ./libmaus2/util/AtomicArray.hpp:45:43: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 45 | AtomicArray(AtomicArray const & O) = delete; | ^~~~~~~~~~~~~~~~~ ./libmaus2/util/AtomicArray.hpp:45:43: note: remove the ‘< >’ In file included from ./libmaus2/suffixsort/bwtb3m/BwtMergeIsaParallelBase.hpp:24: ./libmaus2/suffixsort/GapArrayByte.hpp: In member function ‘void libmaus2::suffixsort::GapArrayByte::flush()’: ./libmaus2/suffixsort/GapArrayByte.hpp:134:42: warning: variable ‘overflowcnt’ set but not used [-Wunused-but-set-variable=] 134 | uint64_t overflowcnt = 0; | ^~~~~~~~~~~ In file included from ./libmaus2/suffixsort/BwtMergeTempFileNameSet.hpp:27, from ./libmaus2/suffixsort/BwtMergeBlockSortResult.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:33: ./libmaus2/util/DirectoryStructure.hpp: In member function ‘std::string libmaus2::util::DirectoryStructure::printGenerate(std::ostream&, std::string, uint64_t) const’: ./libmaus2/util/DirectoryStructure.hpp:207:58: warning: variable ‘batchcnt’ set but not used [-Wunused-but-set-variable=] 207 | uint64_t batchcnt = 0; | ^~~~~~~~ ./libmaus2/util/DirectoryStructure.hpp: In member function ‘std::string libmaus2::util::DirectoryStructure::printRemove(std::ostream&, std::string, uint64_t) const’: ./libmaus2/util/DirectoryStructure.hpp:282:58: warning: variable ‘batchcnt’ set but not used [-Wunused-but-set-variable=] 282 | uint64_t batchcnt = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:183, from ./libmaus2/huffman/CanonicalEncoder.hpp:26, from ./libmaus2/huffman/RLEncoder.hpp:25, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22: ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 2]’: ./libmaus2/huffman/HuffmanSorting.hpp:860:55: required from here 860 | huffman::EncodeTable enctable ( root ); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:188: ./libmaus2/huffman/HuffmanSorting.hpp: In instantiation of ‘static void libmaus2::huffman::HuffmanSorting::uncompressHuffmanCoded(uint64_t*, uint64_t, uint64_t, uint64_t, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::HuffmanTreeNode*, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::EncodeTable&) [with unsigned int lookupwords = 2; uint64_t = long long unsigned int]’: ./libmaus2/huffman/HuffmanSorting.hpp:1091:27: required from here 1091 | uncompressHuffmanCoded(acode.get(), 0 /* bit offset */, lowhalf /* syms */, firsthighsym, enctable,dectable,root.get(),dectable0,dectable1,enctable0,enctable1); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/huffman/HuffmanSorting.hpp:534:42: warning: variable ‘alldecoffset’ set but not used [-Wunused-but-set-variable=] 534 | uint64_t alldecoffset = highdecoffset; | ^~~~~~~~~~~~ ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 1]’: ./libmaus2/huffman/CanonicalEncoder.hpp:219:116: required from here 219 | return ::libmaus2::huffman::EncodeTable<1>::unique_ptr_type(new ::libmaus2::huffman::EncodeTable<1>(Ptree.get())); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/wavelet/RlToHwtBase.hpp:30, from ./libmaus2/wavelet/RlToHwtTermRequest.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:44: ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp: In instantiation of ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTree(libmaus2::autoarray::AutoArray&, const std::string&, const std::string&, const libmaus2::huffman::HuffmanTree*, uint64_t) [with bool radixsort = true; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’: ./libmaus2/suffixsort/BwtMergeBlockSortRequest.hpp:862:90: required from ‘libmaus2::suffixsort::BwtMergeBlockSortResult libmaus2::suffixsort::BwtMergeBlockSortRequest::sortBlock(std::ostream*) const [with input_types_type = libmaus2::suffixsort::ByteInputTypes<32>; rl_encoder = libmaus2::huffman::RLEncoderTemplate, libmaus2::bitio::FastWriteBitWriterTemplate >, 128, 255, false> > >; std::ostream = std::basic_ostream]’ 862 | ::libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTree( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 863 | UT,tmpfilenames.getHWT(),tmpfileprefix,uhnode.get(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 864 | 1/* num threads */ | ~~~~~~~~~~~~~~~~~~ 865 | ); | ~ ./libmaus2/suffixsort/BwtMergeBlockSortRequest.hpp:979:79: required from ‘std::string libmaus2::suffixsort::BwtMergeBlockSortRequest::dispatch(std::ostream*) const [with rl_encoder = libmaus2::huffman::RLEncoderTemplate, libmaus2::bitio::FastWriteBitWriterTemplate >, 128, 255, false> > >; std::string = std::__cxx11::basic_string; std::ostream = std::basic_ostream]’ 979 | result = sortBlock,rl_encoder>(logstr); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BaseBlockSortThread.hpp:128:118: required from here 128 | block->sortresult = ::libmaus2::suffixsort::BwtMergeBlockSortResult::load(block->sortreq.dispatch(logstr)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:874:90: warning: variable ‘l_numsyms0’ set but not used [-Wunused-but-set-variable=] 874 | uint64_t l_numsyms0 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:879:90: warning: variable ‘r_numsyms1’ set but not used [-Wunused-but-set-variable=] 879 | uint64_t r_numsyms1 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:755:66: warning: variable ‘numsyms1’ set but not used [-Wunused-but-set-variable=] 755 | uint64_t numsyms1 = 0; | ^~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp: In instantiation of ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRl(const std::string&, const std::string&, const std::string&, const libmaus2::huffman::HuffmanTree&, uint64_t, uint64_t) [with rl_decoder = libmaus2::huffman::RLDecoder; bool radixsort = true; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1368:123: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwt(const std::string&, const std::string&, std::string, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’ 1368 | ::libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRl( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 1369 | bwt,hwt,tmpprefix,H, | ~~~~~~~~~~~~~~~~~~~~ 1370 | utf8WaveletMaxPartMem() /* part size maximum */, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1371 | utf8WaveletMaxThreads()); | ~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:4191:65: required from ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeBwt(const libmaus2::suffixsort::bwtb3m::BwtMergeSortOptions&, std::ostream*) [with input_types_type = libmaus2::suffixsort::PacTermInputTypes<32>; std::ostream = std::basic_ostream]’ 4191 | libmaus2::wavelet::RlToHwtBase::rlToHwt(options.outfn, outhwt, options.tmpfilenamebase+"_finalhwttmp",options.numthreads) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplatePacTerm32.cpp:22:47: required from here 22 | template struct libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate< libmaus2::suffixsort::PacTermInputTypes<32> >; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1419:90: warning: variable ‘l_numsyms0’ set but not used [-Wunused-but-set-variable=] 1419 | uint64_t l_numsyms0 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1424:90: warning: variable ‘r_numsyms1’ set but not used [-Wunused-but-set-variable=] 1424 | uint64_t r_numsyms1 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1299:66: warning: variable ‘numsyms1’ set but not used [-Wunused-but-set-variable=] 1299 | uint64_t numsyms1 = 0; | ^~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp: In instantiation of ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRlWithTerm(const std::vector >&, const std::string&, const std::string&, const libmaus2::huffman::HuffmanTree&, uint64_t, uint64_t, uint64_t, uint64_t) [with rl_decoder = libmaus2::huffman::RLDecoder; bool radixsort = true; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1500:131: required from ‘static void libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtTerm(const std::vector >&, const std::string&, std::string, libmaus2::huffman::HuffmanTree&, uint64_t, uint64_t, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’ 1500 | ::libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRlWithTerm( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 1501 | bwt,hwt,tmpprefix,H,p0r,bwtterm, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1502 | utf8WaveletMaxPartMem() /* maximum part size */, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1503 | utf8WaveletMaxThreads() | ~~~~~~~~~~~~~~~~~~~~~~~ 1504 | ); | ~ ./libmaus2/wavelet/RlToHwtBase.hpp:1687:17: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtTerm(const std::vector >&, const std::string&, std::string, std::string, uint64_t, uint64_t, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’ 1687 | rlToHwtTerm(bwt,hwt,tmpprefix,H,bwtterm,p0r,numthreads); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/wavelet/RlToHwtTermRequest.hpp:118:67: required from ‘libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtTermRequest::dispatch() [with rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >]’ 118 | libmaus2::wavelet::RlToHwtBase::rlToHwtTerm(bwt,hwt,tmpprefix,huftreefilename,bwtterm,p0r,numthreads) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:926:102: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::ensureWaveletTreeGenerated(const libmaus2::suffixsort::BwtMergeBlockSortResult&, std::ostream*) [with input_types_type = libmaus2::suffixsort::PacTermInputTypes<32>; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::ostream = std::basic_ostream]’ 926 | libmaus2::wavelet::ImpCompactHuffmanWaveletTree::unique_ptr_type ptr(ureq->dispatch()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~ libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplatePacTerm32.cpp:22:47: required from here 22 | template struct libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate< libmaus2::suffixsort::PacTermInputTypes<32> >; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:2048:90: warning: variable ‘l_numsyms0’ set but not used [-Wunused-but-set-variable=] 2048 | uint64_t l_numsyms0 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:2053:90: warning: variable ‘r_numsyms1’ set but not used [-Wunused-but-set-variable=] 2053 | uint64_t r_numsyms1 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1929:66: warning: variable ‘numsyms1’ set but not used [-Wunused-but-set-variable=] 1929 | uint64_t numsyms1 = 0; | ^~~~~~~~ libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplatePacTerm32.cpp -o libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplatePacTerm32.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplateCompact32.lo `test -f 'libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateCompact32.cpp' || echo './'`libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateCompact32.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateCompact32.cpp -fPIC -DPIC -o libmaus2/suffixsort/bwtb3m/.libs/la-BwtMergeSortTemplateCompact32.o In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/util/IntervalTree.hpp:25, from ./libmaus2/gamma/GammaRLDecoder.hpp:28, from ./libmaus2/gamma/GammaRLEncoder.hpp:29, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:24, from ./libmaus2/suffixsort/bwtb3m/BwtMergeComputeSampledSA.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateCompact32.cpp:20: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/suffixsort/bwtb3m/GapArrayWrapper.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeIsaParallelBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:24: ./libmaus2/util/AtomicArray.hpp: At global scope: ./libmaus2/util/AtomicArray.hpp:45:43: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 45 | AtomicArray(AtomicArray const & O) = delete; | ^~~~~~~~~~~~~~~~~ ./libmaus2/util/AtomicArray.hpp:45:43: note: remove the ‘< >’ In file included from ./libmaus2/suffixsort/bwtb3m/BwtMergeIsaParallelBase.hpp:24: ./libmaus2/suffixsort/GapArrayByte.hpp: In member function ‘void libmaus2::suffixsort::GapArrayByte::flush()’: ./libmaus2/suffixsort/GapArrayByte.hpp:134:42: warning: variable ‘overflowcnt’ set but not used [-Wunused-but-set-variable=] 134 | uint64_t overflowcnt = 0; | ^~~~~~~~~~~ In file included from ./libmaus2/suffixsort/BwtMergeTempFileNameSet.hpp:27, from ./libmaus2/suffixsort/BwtMergeBlockSortResult.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:33: ./libmaus2/util/DirectoryStructure.hpp: In member function ‘std::string libmaus2::util::DirectoryStructure::printGenerate(std::ostream&, std::string, uint64_t) const’: ./libmaus2/util/DirectoryStructure.hpp:207:58: warning: variable ‘batchcnt’ set but not used [-Wunused-but-set-variable=] 207 | uint64_t batchcnt = 0; | ^~~~~~~~ ./libmaus2/util/DirectoryStructure.hpp: In member function ‘std::string libmaus2::util::DirectoryStructure::printRemove(std::ostream&, std::string, uint64_t) const’: ./libmaus2/util/DirectoryStructure.hpp:282:58: warning: variable ‘batchcnt’ set but not used [-Wunused-but-set-variable=] 282 | uint64_t batchcnt = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:183, from ./libmaus2/huffman/CanonicalEncoder.hpp:26, from ./libmaus2/huffman/RLEncoder.hpp:25, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22: ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 2]’: ./libmaus2/huffman/HuffmanSorting.hpp:860:55: required from here 860 | huffman::EncodeTable enctable ( root ); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:188: ./libmaus2/huffman/HuffmanSorting.hpp: In instantiation of ‘static void libmaus2::huffman::HuffmanSorting::uncompressHuffmanCoded(uint64_t*, uint64_t, uint64_t, uint64_t, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::HuffmanTreeNode*, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::EncodeTable&) [with unsigned int lookupwords = 2; uint64_t = long long unsigned int]’: ./libmaus2/huffman/HuffmanSorting.hpp:1091:27: required from here 1091 | uncompressHuffmanCoded(acode.get(), 0 /* bit offset */, lowhalf /* syms */, firsthighsym, enctable,dectable,root.get(),dectable0,dectable1,enctable0,enctable1); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/huffman/HuffmanSorting.hpp:534:42: warning: variable ‘alldecoffset’ set but not used [-Wunused-but-set-variable=] 534 | uint64_t alldecoffset = highdecoffset; | ^~~~~~~~~~~~ ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 1]’: ./libmaus2/huffman/CanonicalEncoder.hpp:219:116: required from here 219 | return ::libmaus2::huffman::EncodeTable<1>::unique_ptr_type(new ::libmaus2::huffman::EncodeTable<1>(Ptree.get())); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/wavelet/RlToHwtBase.hpp:30, from ./libmaus2/wavelet/RlToHwtTermRequest.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:44: ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp: In instantiation of ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTree(libmaus2::autoarray::AutoArray&, const std::string&, const std::string&, const libmaus2::huffman::HuffmanTree*, uint64_t) [with bool radixsort = true; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’: ./libmaus2/suffixsort/BwtMergeBlockSortRequest.hpp:862:90: required from ‘libmaus2::suffixsort::BwtMergeBlockSortResult libmaus2::suffixsort::BwtMergeBlockSortRequest::sortBlock(std::ostream*) const [with input_types_type = libmaus2::suffixsort::ByteInputTypes<32>; rl_encoder = libmaus2::huffman::RLEncoderTemplate, libmaus2::bitio::FastWriteBitWriterTemplate >, 128, 255, false> > >; std::ostream = std::basic_ostream]’ 862 | ::libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTree( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 863 | UT,tmpfilenames.getHWT(),tmpfileprefix,uhnode.get(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 864 | 1/* num threads */ | ~~~~~~~~~~~~~~~~~~ 865 | ); | ~ ./libmaus2/suffixsort/BwtMergeBlockSortRequest.hpp:979:79: required from ‘std::string libmaus2::suffixsort::BwtMergeBlockSortRequest::dispatch(std::ostream*) const [with rl_encoder = libmaus2::huffman::RLEncoderTemplate, libmaus2::bitio::FastWriteBitWriterTemplate >, 128, 255, false> > >; std::string = std::__cxx11::basic_string; std::ostream = std::basic_ostream]’ 979 | result = sortBlock,rl_encoder>(logstr); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BaseBlockSortThread.hpp:128:118: required from here 128 | block->sortresult = ::libmaus2::suffixsort::BwtMergeBlockSortResult::load(block->sortreq.dispatch(logstr)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:874:90: warning: variable ‘l_numsyms0’ set but not used [-Wunused-but-set-variable=] 874 | uint64_t l_numsyms0 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:879:90: warning: variable ‘r_numsyms1’ set but not used [-Wunused-but-set-variable=] 879 | uint64_t r_numsyms1 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:755:66: warning: variable ‘numsyms1’ set but not used [-Wunused-but-set-variable=] 755 | uint64_t numsyms1 = 0; | ^~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp: In instantiation of ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRl(const std::string&, const std::string&, const std::string&, const libmaus2::huffman::HuffmanTree&, uint64_t, uint64_t) [with rl_decoder = libmaus2::huffman::RLDecoder; bool radixsort = true; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1368:123: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwt(const std::string&, const std::string&, std::string, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’ 1368 | ::libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRl( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 1369 | bwt,hwt,tmpprefix,H, | ~~~~~~~~~~~~~~~~~~~~ 1370 | utf8WaveletMaxPartMem() /* part size maximum */, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1371 | utf8WaveletMaxThreads()); | ~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:4191:65: required from ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeBwt(const libmaus2::suffixsort::bwtb3m::BwtMergeSortOptions&, std::ostream*) [with input_types_type = libmaus2::suffixsort::CompactInputTypes<32>; std::ostream = std::basic_ostream]’ 4191 | libmaus2::wavelet::RlToHwtBase::rlToHwt(options.outfn, outhwt, options.tmpfilenamebase+"_finalhwttmp",options.numthreads) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateCompact32.cpp:22:47: required from here 22 | template struct libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate< libmaus2::suffixsort::CompactInputTypes<32> >; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1419:90: warning: variable ‘l_numsyms0’ set but not used [-Wunused-but-set-variable=] 1419 | uint64_t l_numsyms0 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1424:90: warning: variable ‘r_numsyms1’ set but not used [-Wunused-but-set-variable=] 1424 | uint64_t r_numsyms1 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1299:66: warning: variable ‘numsyms1’ set but not used [-Wunused-but-set-variable=] 1299 | uint64_t numsyms1 = 0; | ^~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp: In instantiation of ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRlWithTerm(const std::vector >&, const std::string&, const std::string&, const libmaus2::huffman::HuffmanTree&, uint64_t, uint64_t, uint64_t, uint64_t) [with rl_decoder = libmaus2::huffman::RLDecoder; bool radixsort = true; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1500:131: required from ‘static void libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtTerm(const std::vector >&, const std::string&, std::string, libmaus2::huffman::HuffmanTree&, uint64_t, uint64_t, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’ 1500 | ::libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRlWithTerm( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 1501 | bwt,hwt,tmpprefix,H,p0r,bwtterm, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1502 | utf8WaveletMaxPartMem() /* maximum part size */, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1503 | utf8WaveletMaxThreads() | ~~~~~~~~~~~~~~~~~~~~~~~ 1504 | ); | ~ ./libmaus2/wavelet/RlToHwtBase.hpp:1687:17: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtTerm(const std::vector >&, const std::string&, std::string, std::string, uint64_t, uint64_t, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’ 1687 | rlToHwtTerm(bwt,hwt,tmpprefix,H,bwtterm,p0r,numthreads); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/wavelet/RlToHwtTermRequest.hpp:118:67: required from ‘libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtTermRequest::dispatch() [with rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >]’ 118 | libmaus2::wavelet::RlToHwtBase::rlToHwtTerm(bwt,hwt,tmpprefix,huftreefilename,bwtterm,p0r,numthreads) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:926:102: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::ensureWaveletTreeGenerated(const libmaus2::suffixsort::BwtMergeBlockSortResult&, std::ostream*) [with input_types_type = libmaus2::suffixsort::CompactInputTypes<32>; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::ostream = std::basic_ostream]’ 926 | libmaus2::wavelet::ImpCompactHuffmanWaveletTree::unique_ptr_type ptr(ureq->dispatch()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~ libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateCompact32.cpp:22:47: required from here 22 | template struct libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate< libmaus2::suffixsort::CompactInputTypes<32> >; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:2048:90: warning: variable ‘l_numsyms0’ set but not used [-Wunused-but-set-variable=] 2048 | uint64_t l_numsyms0 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:2053:90: warning: variable ‘r_numsyms1’ set but not used [-Wunused-but-set-variable=] 2053 | uint64_t r_numsyms1 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1929:66: warning: variable ‘numsyms1’ set but not used [-Wunused-but-set-variable=] 1929 | uint64_t numsyms1 = 0; | ^~~~~~~~ libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateCompact32.cpp -o libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplateCompact32.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplatePac32.lo `test -f 'libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplatePac32.cpp' || echo './'`libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplatePac32.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplatePac32.cpp -fPIC -DPIC -o libmaus2/suffixsort/bwtb3m/.libs/la-BwtMergeSortTemplatePac32.o In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/util/IntervalTree.hpp:25, from ./libmaus2/gamma/GammaRLDecoder.hpp:28, from ./libmaus2/gamma/GammaRLEncoder.hpp:29, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:24, from ./libmaus2/suffixsort/bwtb3m/BwtMergeComputeSampledSA.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplatePac32.cpp:20: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/suffixsort/bwtb3m/GapArrayWrapper.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeIsaParallelBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:24: ./libmaus2/util/AtomicArray.hpp: At global scope: ./libmaus2/util/AtomicArray.hpp:45:43: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 45 | AtomicArray(AtomicArray const & O) = delete; | ^~~~~~~~~~~~~~~~~ ./libmaus2/util/AtomicArray.hpp:45:43: note: remove the ‘< >’ In file included from ./libmaus2/suffixsort/bwtb3m/BwtMergeIsaParallelBase.hpp:24: ./libmaus2/suffixsort/GapArrayByte.hpp: In member function ‘void libmaus2::suffixsort::GapArrayByte::flush()’: ./libmaus2/suffixsort/GapArrayByte.hpp:134:42: warning: variable ‘overflowcnt’ set but not used [-Wunused-but-set-variable=] 134 | uint64_t overflowcnt = 0; | ^~~~~~~~~~~ In file included from ./libmaus2/suffixsort/BwtMergeTempFileNameSet.hpp:27, from ./libmaus2/suffixsort/BwtMergeBlockSortResult.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:33: ./libmaus2/util/DirectoryStructure.hpp: In member function ‘std::string libmaus2::util::DirectoryStructure::printGenerate(std::ostream&, std::string, uint64_t) const’: ./libmaus2/util/DirectoryStructure.hpp:207:58: warning: variable ‘batchcnt’ set but not used [-Wunused-but-set-variable=] 207 | uint64_t batchcnt = 0; | ^~~~~~~~ ./libmaus2/util/DirectoryStructure.hpp: In member function ‘std::string libmaus2::util::DirectoryStructure::printRemove(std::ostream&, std::string, uint64_t) const’: ./libmaus2/util/DirectoryStructure.hpp:282:58: warning: variable ‘batchcnt’ set but not used [-Wunused-but-set-variable=] 282 | uint64_t batchcnt = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:183, from ./libmaus2/huffman/CanonicalEncoder.hpp:26, from ./libmaus2/huffman/RLEncoder.hpp:25, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22: ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 2]’: ./libmaus2/huffman/HuffmanSorting.hpp:860:55: required from here 860 | huffman::EncodeTable enctable ( root ); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:188: ./libmaus2/huffman/HuffmanSorting.hpp: In instantiation of ‘static void libmaus2::huffman::HuffmanSorting::uncompressHuffmanCoded(uint64_t*, uint64_t, uint64_t, uint64_t, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::HuffmanTreeNode*, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::EncodeTable&) [with unsigned int lookupwords = 2; uint64_t = long long unsigned int]’: ./libmaus2/huffman/HuffmanSorting.hpp:1091:27: required from here 1091 | uncompressHuffmanCoded(acode.get(), 0 /* bit offset */, lowhalf /* syms */, firsthighsym, enctable,dectable,root.get(),dectable0,dectable1,enctable0,enctable1); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/huffman/HuffmanSorting.hpp:534:42: warning: variable ‘alldecoffset’ set but not used [-Wunused-but-set-variable=] 534 | uint64_t alldecoffset = highdecoffset; | ^~~~~~~~~~~~ ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 1]’: ./libmaus2/huffman/CanonicalEncoder.hpp:219:116: required from here 219 | return ::libmaus2::huffman::EncodeTable<1>::unique_ptr_type(new ::libmaus2::huffman::EncodeTable<1>(Ptree.get())); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/wavelet/RlToHwtBase.hpp:30, from ./libmaus2/wavelet/RlToHwtTermRequest.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:44: ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp: In instantiation of ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTree(libmaus2::autoarray::AutoArray&, const std::string&, const std::string&, const libmaus2::huffman::HuffmanTree*, uint64_t) [with bool radixsort = true; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’: ./libmaus2/suffixsort/BwtMergeBlockSortRequest.hpp:862:90: required from ‘libmaus2::suffixsort::BwtMergeBlockSortResult libmaus2::suffixsort::BwtMergeBlockSortRequest::sortBlock(std::ostream*) const [with input_types_type = libmaus2::suffixsort::ByteInputTypes<32>; rl_encoder = libmaus2::huffman::RLEncoderTemplate, libmaus2::bitio::FastWriteBitWriterTemplate >, 128, 255, false> > >; std::ostream = std::basic_ostream]’ 862 | ::libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTree( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 863 | UT,tmpfilenames.getHWT(),tmpfileprefix,uhnode.get(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 864 | 1/* num threads */ | ~~~~~~~~~~~~~~~~~~ 865 | ); | ~ ./libmaus2/suffixsort/BwtMergeBlockSortRequest.hpp:979:79: required from ‘std::string libmaus2::suffixsort::BwtMergeBlockSortRequest::dispatch(std::ostream*) const [with rl_encoder = libmaus2::huffman::RLEncoderTemplate, libmaus2::bitio::FastWriteBitWriterTemplate >, 128, 255, false> > >; std::string = std::__cxx11::basic_string; std::ostream = std::basic_ostream]’ 979 | result = sortBlock,rl_encoder>(logstr); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BaseBlockSortThread.hpp:128:118: required from here 128 | block->sortresult = ::libmaus2::suffixsort::BwtMergeBlockSortResult::load(block->sortreq.dispatch(logstr)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:874:90: warning: variable ‘l_numsyms0’ set but not used [-Wunused-but-set-variable=] 874 | uint64_t l_numsyms0 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:879:90: warning: variable ‘r_numsyms1’ set but not used [-Wunused-but-set-variable=] 879 | uint64_t r_numsyms1 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:755:66: warning: variable ‘numsyms1’ set but not used [-Wunused-but-set-variable=] 755 | uint64_t numsyms1 = 0; | ^~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp: In instantiation of ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRl(const std::string&, const std::string&, const std::string&, const libmaus2::huffman::HuffmanTree&, uint64_t, uint64_t) [with rl_decoder = libmaus2::huffman::RLDecoder; bool radixsort = true; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1368:123: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwt(const std::string&, const std::string&, std::string, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’ 1368 | ::libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRl( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 1369 | bwt,hwt,tmpprefix,H, | ~~~~~~~~~~~~~~~~~~~~ 1370 | utf8WaveletMaxPartMem() /* part size maximum */, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1371 | utf8WaveletMaxThreads()); | ~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:4191:65: required from ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeBwt(const libmaus2::suffixsort::bwtb3m::BwtMergeSortOptions&, std::ostream*) [with input_types_type = libmaus2::suffixsort::PacInputTypes<32>; std::ostream = std::basic_ostream]’ 4191 | libmaus2::wavelet::RlToHwtBase::rlToHwt(options.outfn, outhwt, options.tmpfilenamebase+"_finalhwttmp",options.numthreads) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplatePac32.cpp:22:47: required from here 22 | template struct libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate< libmaus2::suffixsort::PacInputTypes<32> >; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1419:90: warning: variable ‘l_numsyms0’ set but not used [-Wunused-but-set-variable=] 1419 | uint64_t l_numsyms0 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1424:90: warning: variable ‘r_numsyms1’ set but not used [-Wunused-but-set-variable=] 1424 | uint64_t r_numsyms1 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1299:66: warning: variable ‘numsyms1’ set but not used [-Wunused-but-set-variable=] 1299 | uint64_t numsyms1 = 0; | ^~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp: In instantiation of ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRlWithTerm(const std::vector >&, const std::string&, const std::string&, const libmaus2::huffman::HuffmanTree&, uint64_t, uint64_t, uint64_t, uint64_t) [with rl_decoder = libmaus2::huffman::RLDecoder; bool radixsort = true; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1500:131: required from ‘static void libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtTerm(const std::vector >&, const std::string&, std::string, libmaus2::huffman::HuffmanTree&, uint64_t, uint64_t, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’ 1500 | ::libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRlWithTerm( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 1501 | bwt,hwt,tmpprefix,H,p0r,bwtterm, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1502 | utf8WaveletMaxPartMem() /* maximum part size */, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1503 | utf8WaveletMaxThreads() | ~~~~~~~~~~~~~~~~~~~~~~~ 1504 | ); | ~ ./libmaus2/wavelet/RlToHwtBase.hpp:1687:17: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtTerm(const std::vector >&, const std::string&, std::string, std::string, uint64_t, uint64_t, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’ 1687 | rlToHwtTerm(bwt,hwt,tmpprefix,H,bwtterm,p0r,numthreads); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/wavelet/RlToHwtTermRequest.hpp:118:67: required from ‘libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtTermRequest::dispatch() [with rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >]’ 118 | libmaus2::wavelet::RlToHwtBase::rlToHwtTerm(bwt,hwt,tmpprefix,huftreefilename,bwtterm,p0r,numthreads) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:926:102: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::ensureWaveletTreeGenerated(const libmaus2::suffixsort::BwtMergeBlockSortResult&, std::ostream*) [with input_types_type = libmaus2::suffixsort::PacInputTypes<32>; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::ostream = std::basic_ostream]’ 926 | libmaus2::wavelet::ImpCompactHuffmanWaveletTree::unique_ptr_type ptr(ureq->dispatch()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~ libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplatePac32.cpp:22:47: required from here 22 | template struct libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate< libmaus2::suffixsort::PacInputTypes<32> >; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:2048:90: warning: variable ‘l_numsyms0’ set but not used [-Wunused-but-set-variable=] 2048 | uint64_t l_numsyms0 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:2053:90: warning: variable ‘r_numsyms1’ set but not used [-Wunused-but-set-variable=] 2053 | uint64_t r_numsyms1 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1929:66: warning: variable ‘numsyms1’ set but not used [-Wunused-but-set-variable=] 1929 | uint64_t numsyms1 = 0; | ^~~~~~~~ libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplatePac32.cpp -o libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplatePac32.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplateUtf832.lo `test -f 'libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateUtf832.cpp' || echo './'`libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateUtf832.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateUtf832.cpp -fPIC -DPIC -o libmaus2/suffixsort/bwtb3m/.libs/la-BwtMergeSortTemplateUtf832.o In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/util/IntervalTree.hpp:25, from ./libmaus2/gamma/GammaRLDecoder.hpp:28, from ./libmaus2/gamma/GammaRLEncoder.hpp:29, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:24, from ./libmaus2/suffixsort/bwtb3m/BwtMergeComputeSampledSA.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateUtf832.cpp:20: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/suffixsort/bwtb3m/GapArrayWrapper.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeIsaParallelBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:24: ./libmaus2/util/AtomicArray.hpp: At global scope: ./libmaus2/util/AtomicArray.hpp:45:43: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 45 | AtomicArray(AtomicArray const & O) = delete; | ^~~~~~~~~~~~~~~~~ ./libmaus2/util/AtomicArray.hpp:45:43: note: remove the ‘< >’ In file included from ./libmaus2/suffixsort/bwtb3m/BwtMergeIsaParallelBase.hpp:24: ./libmaus2/suffixsort/GapArrayByte.hpp: In member function ‘void libmaus2::suffixsort::GapArrayByte::flush()’: ./libmaus2/suffixsort/GapArrayByte.hpp:134:42: warning: variable ‘overflowcnt’ set but not used [-Wunused-but-set-variable=] 134 | uint64_t overflowcnt = 0; | ^~~~~~~~~~~ In file included from ./libmaus2/suffixsort/BwtMergeTempFileNameSet.hpp:27, from ./libmaus2/suffixsort/BwtMergeBlockSortResult.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:33: ./libmaus2/util/DirectoryStructure.hpp: In member function ‘std::string libmaus2::util::DirectoryStructure::printGenerate(std::ostream&, std::string, uint64_t) const’: ./libmaus2/util/DirectoryStructure.hpp:207:58: warning: variable ‘batchcnt’ set but not used [-Wunused-but-set-variable=] 207 | uint64_t batchcnt = 0; | ^~~~~~~~ ./libmaus2/util/DirectoryStructure.hpp: In member function ‘std::string libmaus2::util::DirectoryStructure::printRemove(std::ostream&, std::string, uint64_t) const’: ./libmaus2/util/DirectoryStructure.hpp:282:58: warning: variable ‘batchcnt’ set but not used [-Wunused-but-set-variable=] 282 | uint64_t batchcnt = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:183, from ./libmaus2/huffman/CanonicalEncoder.hpp:26, from ./libmaus2/huffman/RLEncoder.hpp:25, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22: ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 2]’: ./libmaus2/huffman/HuffmanSorting.hpp:860:55: required from here 860 | huffman::EncodeTable enctable ( root ); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:188: ./libmaus2/huffman/HuffmanSorting.hpp: In instantiation of ‘static void libmaus2::huffman::HuffmanSorting::uncompressHuffmanCoded(uint64_t*, uint64_t, uint64_t, uint64_t, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::HuffmanTreeNode*, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::EncodeTable&) [with unsigned int lookupwords = 2; uint64_t = long long unsigned int]’: ./libmaus2/huffman/HuffmanSorting.hpp:1091:27: required from here 1091 | uncompressHuffmanCoded(acode.get(), 0 /* bit offset */, lowhalf /* syms */, firsthighsym, enctable,dectable,root.get(),dectable0,dectable1,enctable0,enctable1); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/huffman/HuffmanSorting.hpp:534:42: warning: variable ‘alldecoffset’ set but not used [-Wunused-but-set-variable=] 534 | uint64_t alldecoffset = highdecoffset; | ^~~~~~~~~~~~ ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 1]’: ./libmaus2/huffman/CanonicalEncoder.hpp:219:116: required from here 219 | return ::libmaus2::huffman::EncodeTable<1>::unique_ptr_type(new ::libmaus2::huffman::EncodeTable<1>(Ptree.get())); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/wavelet/RlToHwtBase.hpp:30, from ./libmaus2/wavelet/RlToHwtTermRequest.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:44: ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp: In instantiation of ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTree(libmaus2::autoarray::AutoArray&, const std::string&, const std::string&, const libmaus2::huffman::HuffmanTree*, uint64_t) [with bool radixsort = true; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’: ./libmaus2/suffixsort/BwtMergeBlockSortRequest.hpp:862:90: required from ‘libmaus2::suffixsort::BwtMergeBlockSortResult libmaus2::suffixsort::BwtMergeBlockSortRequest::sortBlock(std::ostream*) const [with input_types_type = libmaus2::suffixsort::ByteInputTypes<32>; rl_encoder = libmaus2::huffman::RLEncoderTemplate, libmaus2::bitio::FastWriteBitWriterTemplate >, 128, 255, false> > >; std::ostream = std::basic_ostream]’ 862 | ::libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTree( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 863 | UT,tmpfilenames.getHWT(),tmpfileprefix,uhnode.get(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 864 | 1/* num threads */ | ~~~~~~~~~~~~~~~~~~ 865 | ); | ~ ./libmaus2/suffixsort/BwtMergeBlockSortRequest.hpp:979:79: required from ‘std::string libmaus2::suffixsort::BwtMergeBlockSortRequest::dispatch(std::ostream*) const [with rl_encoder = libmaus2::huffman::RLEncoderTemplate, libmaus2::bitio::FastWriteBitWriterTemplate >, 128, 255, false> > >; std::string = std::__cxx11::basic_string; std::ostream = std::basic_ostream]’ 979 | result = sortBlock,rl_encoder>(logstr); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BaseBlockSortThread.hpp:128:118: required from here 128 | block->sortresult = ::libmaus2::suffixsort::BwtMergeBlockSortResult::load(block->sortreq.dispatch(logstr)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:874:90: warning: variable ‘l_numsyms0’ set but not used [-Wunused-but-set-variable=] 874 | uint64_t l_numsyms0 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:879:90: warning: variable ‘r_numsyms1’ set but not used [-Wunused-but-set-variable=] 879 | uint64_t r_numsyms1 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:755:66: warning: variable ‘numsyms1’ set but not used [-Wunused-but-set-variable=] 755 | uint64_t numsyms1 = 0; | ^~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp: In instantiation of ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRl(const std::string&, const std::string&, const std::string&, const libmaus2::huffman::HuffmanTree&, uint64_t, uint64_t) [with rl_decoder = libmaus2::huffman::RLDecoder; bool radixsort = true; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1368:123: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwt(const std::string&, const std::string&, std::string, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’ 1368 | ::libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRl( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 1369 | bwt,hwt,tmpprefix,H, | ~~~~~~~~~~~~~~~~~~~~ 1370 | utf8WaveletMaxPartMem() /* part size maximum */, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1371 | utf8WaveletMaxThreads()); | ~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:4191:65: required from ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeBwt(const libmaus2::suffixsort::bwtb3m::BwtMergeSortOptions&, std::ostream*) [with input_types_type = libmaus2::suffixsort::Utf8InputTypes<32>; std::ostream = std::basic_ostream]’ 4191 | libmaus2::wavelet::RlToHwtBase::rlToHwt(options.outfn, outhwt, options.tmpfilenamebase+"_finalhwttmp",options.numthreads) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateUtf832.cpp:22:47: required from here 22 | template struct libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate< libmaus2::suffixsort::Utf8InputTypes<32> >; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1419:90: warning: variable ‘l_numsyms0’ set but not used [-Wunused-but-set-variable=] 1419 | uint64_t l_numsyms0 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1424:90: warning: variable ‘r_numsyms1’ set but not used [-Wunused-but-set-variable=] 1424 | uint64_t r_numsyms1 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1299:66: warning: variable ‘numsyms1’ set but not used [-Wunused-but-set-variable=] 1299 | uint64_t numsyms1 = 0; | ^~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp: In instantiation of ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRlWithTerm(const std::vector >&, const std::string&, const std::string&, const libmaus2::huffman::HuffmanTree&, uint64_t, uint64_t, uint64_t, uint64_t) [with rl_decoder = libmaus2::huffman::RLDecoder; bool radixsort = true; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1500:131: required from ‘static void libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtTerm(const std::vector >&, const std::string&, std::string, libmaus2::huffman::HuffmanTree&, uint64_t, uint64_t, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’ 1500 | ::libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRlWithTerm( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 1501 | bwt,hwt,tmpprefix,H,p0r,bwtterm, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1502 | utf8WaveletMaxPartMem() /* maximum part size */, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1503 | utf8WaveletMaxThreads() | ~~~~~~~~~~~~~~~~~~~~~~~ 1504 | ); | ~ ./libmaus2/wavelet/RlToHwtBase.hpp:1687:17: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtTerm(const std::vector >&, const std::string&, std::string, std::string, uint64_t, uint64_t, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’ 1687 | rlToHwtTerm(bwt,hwt,tmpprefix,H,bwtterm,p0r,numthreads); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/wavelet/RlToHwtTermRequest.hpp:118:67: required from ‘libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtTermRequest::dispatch() [with rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >]’ 118 | libmaus2::wavelet::RlToHwtBase::rlToHwtTerm(bwt,hwt,tmpprefix,huftreefilename,bwtterm,p0r,numthreads) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:926:102: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::ensureWaveletTreeGenerated(const libmaus2::suffixsort::BwtMergeBlockSortResult&, std::ostream*) [with input_types_type = libmaus2::suffixsort::Utf8InputTypes<32>; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::ostream = std::basic_ostream]’ 926 | libmaus2::wavelet::ImpCompactHuffmanWaveletTree::unique_ptr_type ptr(ureq->dispatch()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~ libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateUtf832.cpp:22:47: required from here 22 | template struct libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate< libmaus2::suffixsort::Utf8InputTypes<32> >; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:2048:90: warning: variable ‘l_numsyms0’ set but not used [-Wunused-but-set-variable=] 2048 | uint64_t l_numsyms0 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:2053:90: warning: variable ‘r_numsyms1’ set but not used [-Wunused-but-set-variable=] 2053 | uint64_t r_numsyms1 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1929:66: warning: variable ‘numsyms1’ set but not used [-Wunused-but-set-variable=] 1929 | uint64_t numsyms1 = 0; | ^~~~~~~~ libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateUtf832.cpp -o libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplateUtf832.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplateByte64.lo `test -f 'libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateByte64.cpp' || echo './'`libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateByte64.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateByte64.cpp -fPIC -DPIC -o libmaus2/suffixsort/bwtb3m/.libs/la-BwtMergeSortTemplateByte64.o In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/util/IntervalTree.hpp:25, from ./libmaus2/gamma/GammaRLDecoder.hpp:28, from ./libmaus2/gamma/GammaRLEncoder.hpp:29, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:24, from ./libmaus2/suffixsort/bwtb3m/BwtMergeComputeSampledSA.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateByte64.cpp:20: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/suffixsort/bwtb3m/GapArrayWrapper.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeIsaParallelBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:24: ./libmaus2/util/AtomicArray.hpp: At global scope: ./libmaus2/util/AtomicArray.hpp:45:43: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 45 | AtomicArray(AtomicArray const & O) = delete; | ^~~~~~~~~~~~~~~~~ ./libmaus2/util/AtomicArray.hpp:45:43: note: remove the ‘< >’ In file included from ./libmaus2/suffixsort/bwtb3m/BwtMergeIsaParallelBase.hpp:24: ./libmaus2/suffixsort/GapArrayByte.hpp: In member function ‘void libmaus2::suffixsort::GapArrayByte::flush()’: ./libmaus2/suffixsort/GapArrayByte.hpp:134:42: warning: variable ‘overflowcnt’ set but not used [-Wunused-but-set-variable=] 134 | uint64_t overflowcnt = 0; | ^~~~~~~~~~~ In file included from ./libmaus2/suffixsort/BwtMergeTempFileNameSet.hpp:27, from ./libmaus2/suffixsort/BwtMergeBlockSortResult.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:33: ./libmaus2/util/DirectoryStructure.hpp: In member function ‘std::string libmaus2::util::DirectoryStructure::printGenerate(std::ostream&, std::string, uint64_t) const’: ./libmaus2/util/DirectoryStructure.hpp:207:58: warning: variable ‘batchcnt’ set but not used [-Wunused-but-set-variable=] 207 | uint64_t batchcnt = 0; | ^~~~~~~~ ./libmaus2/util/DirectoryStructure.hpp: In member function ‘std::string libmaus2::util::DirectoryStructure::printRemove(std::ostream&, std::string, uint64_t) const’: ./libmaus2/util/DirectoryStructure.hpp:282:58: warning: variable ‘batchcnt’ set but not used [-Wunused-but-set-variable=] 282 | uint64_t batchcnt = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:183, from ./libmaus2/huffman/CanonicalEncoder.hpp:26, from ./libmaus2/huffman/RLEncoder.hpp:25, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22: ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 2]’: ./libmaus2/huffman/HuffmanSorting.hpp:860:55: required from here 860 | huffman::EncodeTable enctable ( root ); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:188: ./libmaus2/huffman/HuffmanSorting.hpp: In instantiation of ‘static void libmaus2::huffman::HuffmanSorting::uncompressHuffmanCoded(uint64_t*, uint64_t, uint64_t, uint64_t, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::HuffmanTreeNode*, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::EncodeTable&) [with unsigned int lookupwords = 2; uint64_t = long long unsigned int]’: ./libmaus2/huffman/HuffmanSorting.hpp:1091:27: required from here 1091 | uncompressHuffmanCoded(acode.get(), 0 /* bit offset */, lowhalf /* syms */, firsthighsym, enctable,dectable,root.get(),dectable0,dectable1,enctable0,enctable1); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/huffman/HuffmanSorting.hpp:534:42: warning: variable ‘alldecoffset’ set but not used [-Wunused-but-set-variable=] 534 | uint64_t alldecoffset = highdecoffset; | ^~~~~~~~~~~~ ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 1]’: ./libmaus2/huffman/CanonicalEncoder.hpp:219:116: required from here 219 | return ::libmaus2::huffman::EncodeTable<1>::unique_ptr_type(new ::libmaus2::huffman::EncodeTable<1>(Ptree.get())); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/wavelet/RlToHwtBase.hpp:30, from ./libmaus2/wavelet/RlToHwtTermRequest.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:44: ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp: In instantiation of ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTree(libmaus2::autoarray::AutoArray&, const std::string&, const std::string&, const libmaus2::huffman::HuffmanTree*, uint64_t) [with bool radixsort = true; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’: ./libmaus2/suffixsort/BwtMergeBlockSortRequest.hpp:862:90: required from ‘libmaus2::suffixsort::BwtMergeBlockSortResult libmaus2::suffixsort::BwtMergeBlockSortRequest::sortBlock(std::ostream*) const [with input_types_type = libmaus2::suffixsort::ByteInputTypes<32>; rl_encoder = libmaus2::huffman::RLEncoderTemplate, libmaus2::bitio::FastWriteBitWriterTemplate >, 128, 255, false> > >; std::ostream = std::basic_ostream]’ 862 | ::libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTree( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 863 | UT,tmpfilenames.getHWT(),tmpfileprefix,uhnode.get(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 864 | 1/* num threads */ | ~~~~~~~~~~~~~~~~~~ 865 | ); | ~ ./libmaus2/suffixsort/BwtMergeBlockSortRequest.hpp:979:79: required from ‘std::string libmaus2::suffixsort::BwtMergeBlockSortRequest::dispatch(std::ostream*) const [with rl_encoder = libmaus2::huffman::RLEncoderTemplate, libmaus2::bitio::FastWriteBitWriterTemplate >, 128, 255, false> > >; std::string = std::__cxx11::basic_string; std::ostream = std::basic_ostream]’ 979 | result = sortBlock,rl_encoder>(logstr); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BaseBlockSortThread.hpp:128:118: required from here 128 | block->sortresult = ::libmaus2::suffixsort::BwtMergeBlockSortResult::load(block->sortreq.dispatch(logstr)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:874:90: warning: variable ‘l_numsyms0’ set but not used [-Wunused-but-set-variable=] 874 | uint64_t l_numsyms0 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:879:90: warning: variable ‘r_numsyms1’ set but not used [-Wunused-but-set-variable=] 879 | uint64_t r_numsyms1 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:755:66: warning: variable ‘numsyms1’ set but not used [-Wunused-but-set-variable=] 755 | uint64_t numsyms1 = 0; | ^~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp: In instantiation of ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRl(const std::string&, const std::string&, const std::string&, const libmaus2::huffman::HuffmanTree&, uint64_t, uint64_t) [with rl_decoder = libmaus2::huffman::RLDecoder; bool radixsort = true; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1368:123: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwt(const std::string&, const std::string&, std::string, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’ 1368 | ::libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRl( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 1369 | bwt,hwt,tmpprefix,H, | ~~~~~~~~~~~~~~~~~~~~ 1370 | utf8WaveletMaxPartMem() /* part size maximum */, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1371 | utf8WaveletMaxThreads()); | ~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:4191:65: required from ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeBwt(const libmaus2::suffixsort::bwtb3m::BwtMergeSortOptions&, std::ostream*) [with input_types_type = libmaus2::suffixsort::ByteInputTypes<64>; std::ostream = std::basic_ostream]’ 4191 | libmaus2::wavelet::RlToHwtBase::rlToHwt(options.outfn, outhwt, options.tmpfilenamebase+"_finalhwttmp",options.numthreads) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateByte64.cpp:22:47: required from here 22 | template struct libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate< libmaus2::suffixsort::ByteInputTypes<64> >; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1419:90: warning: variable ‘l_numsyms0’ set but not used [-Wunused-but-set-variable=] 1419 | uint64_t l_numsyms0 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1424:90: warning: variable ‘r_numsyms1’ set but not used [-Wunused-but-set-variable=] 1424 | uint64_t r_numsyms1 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1299:66: warning: variable ‘numsyms1’ set but not used [-Wunused-but-set-variable=] 1299 | uint64_t numsyms1 = 0; | ^~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp: In instantiation of ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRlWithTerm(const std::vector >&, const std::string&, const std::string&, const libmaus2::huffman::HuffmanTree&, uint64_t, uint64_t, uint64_t, uint64_t) [with rl_decoder = libmaus2::huffman::RLDecoder; bool radixsort = true; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1500:131: required from ‘static void libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtTerm(const std::vector >&, const std::string&, std::string, libmaus2::huffman::HuffmanTree&, uint64_t, uint64_t, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’ 1500 | ::libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRlWithTerm( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 1501 | bwt,hwt,tmpprefix,H,p0r,bwtterm, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1502 | utf8WaveletMaxPartMem() /* maximum part size */, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1503 | utf8WaveletMaxThreads() | ~~~~~~~~~~~~~~~~~~~~~~~ 1504 | ); | ~ ./libmaus2/wavelet/RlToHwtBase.hpp:1687:17: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtTerm(const std::vector >&, const std::string&, std::string, std::string, uint64_t, uint64_t, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’ 1687 | rlToHwtTerm(bwt,hwt,tmpprefix,H,bwtterm,p0r,numthreads); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/wavelet/RlToHwtTermRequest.hpp:118:67: required from ‘libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtTermRequest::dispatch() [with rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >]’ 118 | libmaus2::wavelet::RlToHwtBase::rlToHwtTerm(bwt,hwt,tmpprefix,huftreefilename,bwtterm,p0r,numthreads) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:926:102: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::ensureWaveletTreeGenerated(const libmaus2::suffixsort::BwtMergeBlockSortResult&, std::ostream*) [with input_types_type = libmaus2::suffixsort::ByteInputTypes<64>; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::ostream = std::basic_ostream]’ 926 | libmaus2::wavelet::ImpCompactHuffmanWaveletTree::unique_ptr_type ptr(ureq->dispatch()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~ libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateByte64.cpp:22:47: required from here 22 | template struct libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate< libmaus2::suffixsort::ByteInputTypes<64> >; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:2048:90: warning: variable ‘l_numsyms0’ set but not used [-Wunused-but-set-variable=] 2048 | uint64_t l_numsyms0 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:2053:90: warning: variable ‘r_numsyms1’ set but not used [-Wunused-but-set-variable=] 2053 | uint64_t r_numsyms1 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1929:66: warning: variable ‘numsyms1’ set but not used [-Wunused-but-set-variable=] 1929 | uint64_t numsyms1 = 0; | ^~~~~~~~ libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateByte64.cpp -o libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplateByte64.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplateLz464.lo `test -f 'libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateLz464.cpp' || echo './'`libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateLz464.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateLz464.cpp -fPIC -DPIC -o libmaus2/suffixsort/bwtb3m/.libs/la-BwtMergeSortTemplateLz464.o In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/util/IntervalTree.hpp:25, from ./libmaus2/gamma/GammaRLDecoder.hpp:28, from ./libmaus2/gamma/GammaRLEncoder.hpp:29, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:24, from ./libmaus2/suffixsort/bwtb3m/BwtMergeComputeSampledSA.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateLz464.cpp:20: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/suffixsort/bwtb3m/GapArrayWrapper.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeIsaParallelBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:24: ./libmaus2/util/AtomicArray.hpp: At global scope: ./libmaus2/util/AtomicArray.hpp:45:43: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 45 | AtomicArray(AtomicArray const & O) = delete; | ^~~~~~~~~~~~~~~~~ ./libmaus2/util/AtomicArray.hpp:45:43: note: remove the ‘< >’ In file included from ./libmaus2/suffixsort/bwtb3m/BwtMergeIsaParallelBase.hpp:24: ./libmaus2/suffixsort/GapArrayByte.hpp: In member function ‘void libmaus2::suffixsort::GapArrayByte::flush()’: ./libmaus2/suffixsort/GapArrayByte.hpp:134:42: warning: variable ‘overflowcnt’ set but not used [-Wunused-but-set-variable=] 134 | uint64_t overflowcnt = 0; | ^~~~~~~~~~~ In file included from ./libmaus2/suffixsort/BwtMergeTempFileNameSet.hpp:27, from ./libmaus2/suffixsort/BwtMergeBlockSortResult.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:33: ./libmaus2/util/DirectoryStructure.hpp: In member function ‘std::string libmaus2::util::DirectoryStructure::printGenerate(std::ostream&, std::string, uint64_t) const’: ./libmaus2/util/DirectoryStructure.hpp:207:58: warning: variable ‘batchcnt’ set but not used [-Wunused-but-set-variable=] 207 | uint64_t batchcnt = 0; | ^~~~~~~~ ./libmaus2/util/DirectoryStructure.hpp: In member function ‘std::string libmaus2::util::DirectoryStructure::printRemove(std::ostream&, std::string, uint64_t) const’: ./libmaus2/util/DirectoryStructure.hpp:282:58: warning: variable ‘batchcnt’ set but not used [-Wunused-but-set-variable=] 282 | uint64_t batchcnt = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:183, from ./libmaus2/huffman/CanonicalEncoder.hpp:26, from ./libmaus2/huffman/RLEncoder.hpp:25, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22: ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 2]’: ./libmaus2/huffman/HuffmanSorting.hpp:860:55: required from here 860 | huffman::EncodeTable enctable ( root ); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:188: ./libmaus2/huffman/HuffmanSorting.hpp: In instantiation of ‘static void libmaus2::huffman::HuffmanSorting::uncompressHuffmanCoded(uint64_t*, uint64_t, uint64_t, uint64_t, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::HuffmanTreeNode*, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::EncodeTable&) [with unsigned int lookupwords = 2; uint64_t = long long unsigned int]’: ./libmaus2/huffman/HuffmanSorting.hpp:1091:27: required from here 1091 | uncompressHuffmanCoded(acode.get(), 0 /* bit offset */, lowhalf /* syms */, firsthighsym, enctable,dectable,root.get(),dectable0,dectable1,enctable0,enctable1); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/huffman/HuffmanSorting.hpp:534:42: warning: variable ‘alldecoffset’ set but not used [-Wunused-but-set-variable=] 534 | uint64_t alldecoffset = highdecoffset; | ^~~~~~~~~~~~ ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 1]’: ./libmaus2/huffman/CanonicalEncoder.hpp:219:116: required from here 219 | return ::libmaus2::huffman::EncodeTable<1>::unique_ptr_type(new ::libmaus2::huffman::EncodeTable<1>(Ptree.get())); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/wavelet/RlToHwtBase.hpp:30, from ./libmaus2/wavelet/RlToHwtTermRequest.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:44: ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp: In instantiation of ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTree(libmaus2::autoarray::AutoArray&, const std::string&, const std::string&, const libmaus2::huffman::HuffmanTree*, uint64_t) [with bool radixsort = true; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’: ./libmaus2/suffixsort/BwtMergeBlockSortRequest.hpp:862:90: required from ‘libmaus2::suffixsort::BwtMergeBlockSortResult libmaus2::suffixsort::BwtMergeBlockSortRequest::sortBlock(std::ostream*) const [with input_types_type = libmaus2::suffixsort::ByteInputTypes<32>; rl_encoder = libmaus2::huffman::RLEncoderTemplate, libmaus2::bitio::FastWriteBitWriterTemplate >, 128, 255, false> > >; std::ostream = std::basic_ostream]’ 862 | ::libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTree( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 863 | UT,tmpfilenames.getHWT(),tmpfileprefix,uhnode.get(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 864 | 1/* num threads */ | ~~~~~~~~~~~~~~~~~~ 865 | ); | ~ ./libmaus2/suffixsort/BwtMergeBlockSortRequest.hpp:979:79: required from ‘std::string libmaus2::suffixsort::BwtMergeBlockSortRequest::dispatch(std::ostream*) const [with rl_encoder = libmaus2::huffman::RLEncoderTemplate, libmaus2::bitio::FastWriteBitWriterTemplate >, 128, 255, false> > >; std::string = std::__cxx11::basic_string; std::ostream = std::basic_ostream]’ 979 | result = sortBlock,rl_encoder>(logstr); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BaseBlockSortThread.hpp:128:118: required from here 128 | block->sortresult = ::libmaus2::suffixsort::BwtMergeBlockSortResult::load(block->sortreq.dispatch(logstr)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:874:90: warning: variable ‘l_numsyms0’ set but not used [-Wunused-but-set-variable=] 874 | uint64_t l_numsyms0 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:879:90: warning: variable ‘r_numsyms1’ set but not used [-Wunused-but-set-variable=] 879 | uint64_t r_numsyms1 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:755:66: warning: variable ‘numsyms1’ set but not used [-Wunused-but-set-variable=] 755 | uint64_t numsyms1 = 0; | ^~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp: In instantiation of ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRl(const std::string&, const std::string&, const std::string&, const libmaus2::huffman::HuffmanTree&, uint64_t, uint64_t) [with rl_decoder = libmaus2::huffman::RLDecoder; bool radixsort = true; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1368:123: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwt(const std::string&, const std::string&, std::string, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’ 1368 | ::libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRl( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 1369 | bwt,hwt,tmpprefix,H, | ~~~~~~~~~~~~~~~~~~~~ 1370 | utf8WaveletMaxPartMem() /* part size maximum */, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1371 | utf8WaveletMaxThreads()); | ~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:4191:65: required from ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeBwt(const libmaus2::suffixsort::bwtb3m::BwtMergeSortOptions&, std::ostream*) [with input_types_type = libmaus2::suffixsort::Lz4InputTypes<64>; std::ostream = std::basic_ostream]’ 4191 | libmaus2::wavelet::RlToHwtBase::rlToHwt(options.outfn, outhwt, options.tmpfilenamebase+"_finalhwttmp",options.numthreads) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateLz464.cpp:22:47: required from here 22 | template struct libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate< libmaus2::suffixsort::Lz4InputTypes<64> >; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1419:90: warning: variable ‘l_numsyms0’ set but not used [-Wunused-but-set-variable=] 1419 | uint64_t l_numsyms0 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1424:90: warning: variable ‘r_numsyms1’ set but not used [-Wunused-but-set-variable=] 1424 | uint64_t r_numsyms1 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1299:66: warning: variable ‘numsyms1’ set but not used [-Wunused-but-set-variable=] 1299 | uint64_t numsyms1 = 0; | ^~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp: In instantiation of ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRlWithTerm(const std::vector >&, const std::string&, const std::string&, const libmaus2::huffman::HuffmanTree&, uint64_t, uint64_t, uint64_t, uint64_t) [with rl_decoder = libmaus2::huffman::RLDecoder; bool radixsort = true; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1500:131: required from ‘static void libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtTerm(const std::vector >&, const std::string&, std::string, libmaus2::huffman::HuffmanTree&, uint64_t, uint64_t, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’ 1500 | ::libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRlWithTerm( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 1501 | bwt,hwt,tmpprefix,H,p0r,bwtterm, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1502 | utf8WaveletMaxPartMem() /* maximum part size */, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1503 | utf8WaveletMaxThreads() | ~~~~~~~~~~~~~~~~~~~~~~~ 1504 | ); | ~ ./libmaus2/wavelet/RlToHwtBase.hpp:1687:17: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtTerm(const std::vector >&, const std::string&, std::string, std::string, uint64_t, uint64_t, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’ 1687 | rlToHwtTerm(bwt,hwt,tmpprefix,H,bwtterm,p0r,numthreads); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/wavelet/RlToHwtTermRequest.hpp:118:67: required from ‘libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtTermRequest::dispatch() [with rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >]’ 118 | libmaus2::wavelet::RlToHwtBase::rlToHwtTerm(bwt,hwt,tmpprefix,huftreefilename,bwtterm,p0r,numthreads) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:926:102: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::ensureWaveletTreeGenerated(const libmaus2::suffixsort::BwtMergeBlockSortResult&, std::ostream*) [with input_types_type = libmaus2::suffixsort::Lz4InputTypes<64>; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::ostream = std::basic_ostream]’ 926 | libmaus2::wavelet::ImpCompactHuffmanWaveletTree::unique_ptr_type ptr(ureq->dispatch()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~ libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateLz464.cpp:22:47: required from here 22 | template struct libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate< libmaus2::suffixsort::Lz4InputTypes<64> >; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:2048:90: warning: variable ‘l_numsyms0’ set but not used [-Wunused-but-set-variable=] 2048 | uint64_t l_numsyms0 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:2053:90: warning: variable ‘r_numsyms1’ set but not used [-Wunused-but-set-variable=] 2053 | uint64_t r_numsyms1 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1929:66: warning: variable ‘numsyms1’ set but not used [-Wunused-but-set-variable=] 1929 | uint64_t numsyms1 = 0; | ^~~~~~~~ libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateLz464.cpp -o libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplateLz464.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplatePacTerm64.lo `test -f 'libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplatePacTerm64.cpp' || echo './'`libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplatePacTerm64.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplatePacTerm64.cpp -fPIC -DPIC -o libmaus2/suffixsort/bwtb3m/.libs/la-BwtMergeSortTemplatePacTerm64.o In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/util/IntervalTree.hpp:25, from ./libmaus2/gamma/GammaRLDecoder.hpp:28, from ./libmaus2/gamma/GammaRLEncoder.hpp:29, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:24, from ./libmaus2/suffixsort/bwtb3m/BwtMergeComputeSampledSA.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplatePacTerm64.cpp:20: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/suffixsort/bwtb3m/GapArrayWrapper.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeIsaParallelBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:24: ./libmaus2/util/AtomicArray.hpp: At global scope: ./libmaus2/util/AtomicArray.hpp:45:43: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 45 | AtomicArray(AtomicArray const & O) = delete; | ^~~~~~~~~~~~~~~~~ ./libmaus2/util/AtomicArray.hpp:45:43: note: remove the ‘< >’ In file included from ./libmaus2/suffixsort/bwtb3m/BwtMergeIsaParallelBase.hpp:24: ./libmaus2/suffixsort/GapArrayByte.hpp: In member function ‘void libmaus2::suffixsort::GapArrayByte::flush()’: ./libmaus2/suffixsort/GapArrayByte.hpp:134:42: warning: variable ‘overflowcnt’ set but not used [-Wunused-but-set-variable=] 134 | uint64_t overflowcnt = 0; | ^~~~~~~~~~~ In file included from ./libmaus2/suffixsort/BwtMergeTempFileNameSet.hpp:27, from ./libmaus2/suffixsort/BwtMergeBlockSortResult.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:33: ./libmaus2/util/DirectoryStructure.hpp: In member function ‘std::string libmaus2::util::DirectoryStructure::printGenerate(std::ostream&, std::string, uint64_t) const’: ./libmaus2/util/DirectoryStructure.hpp:207:58: warning: variable ‘batchcnt’ set but not used [-Wunused-but-set-variable=] 207 | uint64_t batchcnt = 0; | ^~~~~~~~ ./libmaus2/util/DirectoryStructure.hpp: In member function ‘std::string libmaus2::util::DirectoryStructure::printRemove(std::ostream&, std::string, uint64_t) const’: ./libmaus2/util/DirectoryStructure.hpp:282:58: warning: variable ‘batchcnt’ set but not used [-Wunused-but-set-variable=] 282 | uint64_t batchcnt = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:183, from ./libmaus2/huffman/CanonicalEncoder.hpp:26, from ./libmaus2/huffman/RLEncoder.hpp:25, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22: ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 2]’: ./libmaus2/huffman/HuffmanSorting.hpp:860:55: required from here 860 | huffman::EncodeTable enctable ( root ); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:188: ./libmaus2/huffman/HuffmanSorting.hpp: In instantiation of ‘static void libmaus2::huffman::HuffmanSorting::uncompressHuffmanCoded(uint64_t*, uint64_t, uint64_t, uint64_t, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::HuffmanTreeNode*, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::EncodeTable&) [with unsigned int lookupwords = 2; uint64_t = long long unsigned int]’: ./libmaus2/huffman/HuffmanSorting.hpp:1091:27: required from here 1091 | uncompressHuffmanCoded(acode.get(), 0 /* bit offset */, lowhalf /* syms */, firsthighsym, enctable,dectable,root.get(),dectable0,dectable1,enctable0,enctable1); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/huffman/HuffmanSorting.hpp:534:42: warning: variable ‘alldecoffset’ set but not used [-Wunused-but-set-variable=] 534 | uint64_t alldecoffset = highdecoffset; | ^~~~~~~~~~~~ ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 1]’: ./libmaus2/huffman/CanonicalEncoder.hpp:219:116: required from here 219 | return ::libmaus2::huffman::EncodeTable<1>::unique_ptr_type(new ::libmaus2::huffman::EncodeTable<1>(Ptree.get())); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/wavelet/RlToHwtBase.hpp:30, from ./libmaus2/wavelet/RlToHwtTermRequest.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:44: ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp: In instantiation of ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTree(libmaus2::autoarray::AutoArray&, const std::string&, const std::string&, const libmaus2::huffman::HuffmanTree*, uint64_t) [with bool radixsort = true; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’: ./libmaus2/suffixsort/BwtMergeBlockSortRequest.hpp:862:90: required from ‘libmaus2::suffixsort::BwtMergeBlockSortResult libmaus2::suffixsort::BwtMergeBlockSortRequest::sortBlock(std::ostream*) const [with input_types_type = libmaus2::suffixsort::ByteInputTypes<32>; rl_encoder = libmaus2::huffman::RLEncoderTemplate, libmaus2::bitio::FastWriteBitWriterTemplate >, 128, 255, false> > >; std::ostream = std::basic_ostream]’ 862 | ::libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTree( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 863 | UT,tmpfilenames.getHWT(),tmpfileprefix,uhnode.get(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 864 | 1/* num threads */ | ~~~~~~~~~~~~~~~~~~ 865 | ); | ~ ./libmaus2/suffixsort/BwtMergeBlockSortRequest.hpp:979:79: required from ‘std::string libmaus2::suffixsort::BwtMergeBlockSortRequest::dispatch(std::ostream*) const [with rl_encoder = libmaus2::huffman::RLEncoderTemplate, libmaus2::bitio::FastWriteBitWriterTemplate >, 128, 255, false> > >; std::string = std::__cxx11::basic_string; std::ostream = std::basic_ostream]’ 979 | result = sortBlock,rl_encoder>(logstr); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BaseBlockSortThread.hpp:128:118: required from here 128 | block->sortresult = ::libmaus2::suffixsort::BwtMergeBlockSortResult::load(block->sortreq.dispatch(logstr)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:874:90: warning: variable ‘l_numsyms0’ set but not used [-Wunused-but-set-variable=] 874 | uint64_t l_numsyms0 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:879:90: warning: variable ‘r_numsyms1’ set but not used [-Wunused-but-set-variable=] 879 | uint64_t r_numsyms1 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:755:66: warning: variable ‘numsyms1’ set but not used [-Wunused-but-set-variable=] 755 | uint64_t numsyms1 = 0; | ^~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp: In instantiation of ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRl(const std::string&, const std::string&, const std::string&, const libmaus2::huffman::HuffmanTree&, uint64_t, uint64_t) [with rl_decoder = libmaus2::huffman::RLDecoder; bool radixsort = true; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1368:123: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwt(const std::string&, const std::string&, std::string, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’ 1368 | ::libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRl( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 1369 | bwt,hwt,tmpprefix,H, | ~~~~~~~~~~~~~~~~~~~~ 1370 | utf8WaveletMaxPartMem() /* part size maximum */, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1371 | utf8WaveletMaxThreads()); | ~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:4191:65: required from ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeBwt(const libmaus2::suffixsort::bwtb3m::BwtMergeSortOptions&, std::ostream*) [with input_types_type = libmaus2::suffixsort::PacTermInputTypes<64>; std::ostream = std::basic_ostream]’ 4191 | libmaus2::wavelet::RlToHwtBase::rlToHwt(options.outfn, outhwt, options.tmpfilenamebase+"_finalhwttmp",options.numthreads) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplatePacTerm64.cpp:22:47: required from here 22 | template struct libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate< libmaus2::suffixsort::PacTermInputTypes<64> >; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1419:90: warning: variable ‘l_numsyms0’ set but not used [-Wunused-but-set-variable=] 1419 | uint64_t l_numsyms0 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1424:90: warning: variable ‘r_numsyms1’ set but not used [-Wunused-but-set-variable=] 1424 | uint64_t r_numsyms1 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1299:66: warning: variable ‘numsyms1’ set but not used [-Wunused-but-set-variable=] 1299 | uint64_t numsyms1 = 0; | ^~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp: In instantiation of ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRlWithTerm(const std::vector >&, const std::string&, const std::string&, const libmaus2::huffman::HuffmanTree&, uint64_t, uint64_t, uint64_t, uint64_t) [with rl_decoder = libmaus2::huffman::RLDecoder; bool radixsort = true; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1500:131: required from ‘static void libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtTerm(const std::vector >&, const std::string&, std::string, libmaus2::huffman::HuffmanTree&, uint64_t, uint64_t, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’ 1500 | ::libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRlWithTerm( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 1501 | bwt,hwt,tmpprefix,H,p0r,bwtterm, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1502 | utf8WaveletMaxPartMem() /* maximum part size */, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1503 | utf8WaveletMaxThreads() | ~~~~~~~~~~~~~~~~~~~~~~~ 1504 | ); | ~ ./libmaus2/wavelet/RlToHwtBase.hpp:1687:17: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtTerm(const std::vector >&, const std::string&, std::string, std::string, uint64_t, uint64_t, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’ 1687 | rlToHwtTerm(bwt,hwt,tmpprefix,H,bwtterm,p0r,numthreads); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/wavelet/RlToHwtTermRequest.hpp:118:67: required from ‘libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtTermRequest::dispatch() [with rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >]’ 118 | libmaus2::wavelet::RlToHwtBase::rlToHwtTerm(bwt,hwt,tmpprefix,huftreefilename,bwtterm,p0r,numthreads) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:926:102: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::ensureWaveletTreeGenerated(const libmaus2::suffixsort::BwtMergeBlockSortResult&, std::ostream*) [with input_types_type = libmaus2::suffixsort::PacTermInputTypes<64>; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::ostream = std::basic_ostream]’ 926 | libmaus2::wavelet::ImpCompactHuffmanWaveletTree::unique_ptr_type ptr(ureq->dispatch()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~ libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplatePacTerm64.cpp:22:47: required from here 22 | template struct libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate< libmaus2::suffixsort::PacTermInputTypes<64> >; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:2048:90: warning: variable ‘l_numsyms0’ set but not used [-Wunused-but-set-variable=] 2048 | uint64_t l_numsyms0 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:2053:90: warning: variable ‘r_numsyms1’ set but not used [-Wunused-but-set-variable=] 2053 | uint64_t r_numsyms1 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1929:66: warning: variable ‘numsyms1’ set but not used [-Wunused-but-set-variable=] 1929 | uint64_t numsyms1 = 0; | ^~~~~~~~ libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplatePacTerm64.cpp -o libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplatePacTerm64.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplateCompact64.lo `test -f 'libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateCompact64.cpp' || echo './'`libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateCompact64.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateCompact64.cpp -fPIC -DPIC -o libmaus2/suffixsort/bwtb3m/.libs/la-BwtMergeSortTemplateCompact64.o In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/util/IntervalTree.hpp:25, from ./libmaus2/gamma/GammaRLDecoder.hpp:28, from ./libmaus2/gamma/GammaRLEncoder.hpp:29, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:24, from ./libmaus2/suffixsort/bwtb3m/BwtMergeComputeSampledSA.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateCompact64.cpp:20: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/suffixsort/bwtb3m/GapArrayWrapper.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeIsaParallelBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:24: ./libmaus2/util/AtomicArray.hpp: At global scope: ./libmaus2/util/AtomicArray.hpp:45:43: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 45 | AtomicArray(AtomicArray const & O) = delete; | ^~~~~~~~~~~~~~~~~ ./libmaus2/util/AtomicArray.hpp:45:43: note: remove the ‘< >’ In file included from ./libmaus2/suffixsort/bwtb3m/BwtMergeIsaParallelBase.hpp:24: ./libmaus2/suffixsort/GapArrayByte.hpp: In member function ‘void libmaus2::suffixsort::GapArrayByte::flush()’: ./libmaus2/suffixsort/GapArrayByte.hpp:134:42: warning: variable ‘overflowcnt’ set but not used [-Wunused-but-set-variable=] 134 | uint64_t overflowcnt = 0; | ^~~~~~~~~~~ In file included from ./libmaus2/suffixsort/BwtMergeTempFileNameSet.hpp:27, from ./libmaus2/suffixsort/BwtMergeBlockSortResult.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:33: ./libmaus2/util/DirectoryStructure.hpp: In member function ‘std::string libmaus2::util::DirectoryStructure::printGenerate(std::ostream&, std::string, uint64_t) const’: ./libmaus2/util/DirectoryStructure.hpp:207:58: warning: variable ‘batchcnt’ set but not used [-Wunused-but-set-variable=] 207 | uint64_t batchcnt = 0; | ^~~~~~~~ ./libmaus2/util/DirectoryStructure.hpp: In member function ‘std::string libmaus2::util::DirectoryStructure::printRemove(std::ostream&, std::string, uint64_t) const’: ./libmaus2/util/DirectoryStructure.hpp:282:58: warning: variable ‘batchcnt’ set but not used [-Wunused-but-set-variable=] 282 | uint64_t batchcnt = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:183, from ./libmaus2/huffman/CanonicalEncoder.hpp:26, from ./libmaus2/huffman/RLEncoder.hpp:25, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22: ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 2]’: ./libmaus2/huffman/HuffmanSorting.hpp:860:55: required from here 860 | huffman::EncodeTable enctable ( root ); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:188: ./libmaus2/huffman/HuffmanSorting.hpp: In instantiation of ‘static void libmaus2::huffman::HuffmanSorting::uncompressHuffmanCoded(uint64_t*, uint64_t, uint64_t, uint64_t, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::HuffmanTreeNode*, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::EncodeTable&) [with unsigned int lookupwords = 2; uint64_t = long long unsigned int]’: ./libmaus2/huffman/HuffmanSorting.hpp:1091:27: required from here 1091 | uncompressHuffmanCoded(acode.get(), 0 /* bit offset */, lowhalf /* syms */, firsthighsym, enctable,dectable,root.get(),dectable0,dectable1,enctable0,enctable1); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/huffman/HuffmanSorting.hpp:534:42: warning: variable ‘alldecoffset’ set but not used [-Wunused-but-set-variable=] 534 | uint64_t alldecoffset = highdecoffset; | ^~~~~~~~~~~~ ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 1]’: ./libmaus2/huffman/CanonicalEncoder.hpp:219:116: required from here 219 | return ::libmaus2::huffman::EncodeTable<1>::unique_ptr_type(new ::libmaus2::huffman::EncodeTable<1>(Ptree.get())); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/wavelet/RlToHwtBase.hpp:30, from ./libmaus2/wavelet/RlToHwtTermRequest.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:44: ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp: In instantiation of ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTree(libmaus2::autoarray::AutoArray&, const std::string&, const std::string&, const libmaus2::huffman::HuffmanTree*, uint64_t) [with bool radixsort = true; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’: ./libmaus2/suffixsort/BwtMergeBlockSortRequest.hpp:862:90: required from ‘libmaus2::suffixsort::BwtMergeBlockSortResult libmaus2::suffixsort::BwtMergeBlockSortRequest::sortBlock(std::ostream*) const [with input_types_type = libmaus2::suffixsort::ByteInputTypes<32>; rl_encoder = libmaus2::huffman::RLEncoderTemplate, libmaus2::bitio::FastWriteBitWriterTemplate >, 128, 255, false> > >; std::ostream = std::basic_ostream]’ 862 | ::libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTree( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 863 | UT,tmpfilenames.getHWT(),tmpfileprefix,uhnode.get(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 864 | 1/* num threads */ | ~~~~~~~~~~~~~~~~~~ 865 | ); | ~ ./libmaus2/suffixsort/BwtMergeBlockSortRequest.hpp:979:79: required from ‘std::string libmaus2::suffixsort::BwtMergeBlockSortRequest::dispatch(std::ostream*) const [with rl_encoder = libmaus2::huffman::RLEncoderTemplate, libmaus2::bitio::FastWriteBitWriterTemplate >, 128, 255, false> > >; std::string = std::__cxx11::basic_string; std::ostream = std::basic_ostream]’ 979 | result = sortBlock,rl_encoder>(logstr); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BaseBlockSortThread.hpp:128:118: required from here 128 | block->sortresult = ::libmaus2::suffixsort::BwtMergeBlockSortResult::load(block->sortreq.dispatch(logstr)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:874:90: warning: variable ‘l_numsyms0’ set but not used [-Wunused-but-set-variable=] 874 | uint64_t l_numsyms0 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:879:90: warning: variable ‘r_numsyms1’ set but not used [-Wunused-but-set-variable=] 879 | uint64_t r_numsyms1 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:755:66: warning: variable ‘numsyms1’ set but not used [-Wunused-but-set-variable=] 755 | uint64_t numsyms1 = 0; | ^~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp: In instantiation of ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRl(const std::string&, const std::string&, const std::string&, const libmaus2::huffman::HuffmanTree&, uint64_t, uint64_t) [with rl_decoder = libmaus2::huffman::RLDecoder; bool radixsort = true; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1368:123: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwt(const std::string&, const std::string&, std::string, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’ 1368 | ::libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRl( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 1369 | bwt,hwt,tmpprefix,H, | ~~~~~~~~~~~~~~~~~~~~ 1370 | utf8WaveletMaxPartMem() /* part size maximum */, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1371 | utf8WaveletMaxThreads()); | ~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:4191:65: required from ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeBwt(const libmaus2::suffixsort::bwtb3m::BwtMergeSortOptions&, std::ostream*) [with input_types_type = libmaus2::suffixsort::CompactInputTypes<64>; std::ostream = std::basic_ostream]’ 4191 | libmaus2::wavelet::RlToHwtBase::rlToHwt(options.outfn, outhwt, options.tmpfilenamebase+"_finalhwttmp",options.numthreads) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateCompact64.cpp:22:47: required from here 22 | template struct libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate< libmaus2::suffixsort::CompactInputTypes<64> >; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1419:90: warning: variable ‘l_numsyms0’ set but not used [-Wunused-but-set-variable=] 1419 | uint64_t l_numsyms0 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1424:90: warning: variable ‘r_numsyms1’ set but not used [-Wunused-but-set-variable=] 1424 | uint64_t r_numsyms1 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1299:66: warning: variable ‘numsyms1’ set but not used [-Wunused-but-set-variable=] 1299 | uint64_t numsyms1 = 0; | ^~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp: In instantiation of ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRlWithTerm(const std::vector >&, const std::string&, const std::string&, const libmaus2::huffman::HuffmanTree&, uint64_t, uint64_t, uint64_t, uint64_t) [with rl_decoder = libmaus2::huffman::RLDecoder; bool radixsort = true; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1500:131: required from ‘static void libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtTerm(const std::vector >&, const std::string&, std::string, libmaus2::huffman::HuffmanTree&, uint64_t, uint64_t, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’ 1500 | ::libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRlWithTerm( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 1501 | bwt,hwt,tmpprefix,H,p0r,bwtterm, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1502 | utf8WaveletMaxPartMem() /* maximum part size */, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1503 | utf8WaveletMaxThreads() | ~~~~~~~~~~~~~~~~~~~~~~~ 1504 | ); | ~ ./libmaus2/wavelet/RlToHwtBase.hpp:1687:17: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtTerm(const std::vector >&, const std::string&, std::string, std::string, uint64_t, uint64_t, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’ 1687 | rlToHwtTerm(bwt,hwt,tmpprefix,H,bwtterm,p0r,numthreads); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/wavelet/RlToHwtTermRequest.hpp:118:67: required from ‘libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtTermRequest::dispatch() [with rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >]’ 118 | libmaus2::wavelet::RlToHwtBase::rlToHwtTerm(bwt,hwt,tmpprefix,huftreefilename,bwtterm,p0r,numthreads) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:926:102: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::ensureWaveletTreeGenerated(const libmaus2::suffixsort::BwtMergeBlockSortResult&, std::ostream*) [with input_types_type = libmaus2::suffixsort::CompactInputTypes<64>; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::ostream = std::basic_ostream]’ 926 | libmaus2::wavelet::ImpCompactHuffmanWaveletTree::unique_ptr_type ptr(ureq->dispatch()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~ libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateCompact64.cpp:22:47: required from here 22 | template struct libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate< libmaus2::suffixsort::CompactInputTypes<64> >; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:2048:90: warning: variable ‘l_numsyms0’ set but not used [-Wunused-but-set-variable=] 2048 | uint64_t l_numsyms0 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:2053:90: warning: variable ‘r_numsyms1’ set but not used [-Wunused-but-set-variable=] 2053 | uint64_t r_numsyms1 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1929:66: warning: variable ‘numsyms1’ set but not used [-Wunused-but-set-variable=] 1929 | uint64_t numsyms1 = 0; | ^~~~~~~~ libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateCompact64.cpp -o libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplateCompact64.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplatePac64.lo `test -f 'libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplatePac64.cpp' || echo './'`libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplatePac64.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplatePac64.cpp -fPIC -DPIC -o libmaus2/suffixsort/bwtb3m/.libs/la-BwtMergeSortTemplatePac64.o In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/util/IntervalTree.hpp:25, from ./libmaus2/gamma/GammaRLDecoder.hpp:28, from ./libmaus2/gamma/GammaRLEncoder.hpp:29, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:24, from ./libmaus2/suffixsort/bwtb3m/BwtMergeComputeSampledSA.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplatePac64.cpp:20: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/suffixsort/bwtb3m/GapArrayWrapper.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeIsaParallelBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:24: ./libmaus2/util/AtomicArray.hpp: At global scope: ./libmaus2/util/AtomicArray.hpp:45:43: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 45 | AtomicArray(AtomicArray const & O) = delete; | ^~~~~~~~~~~~~~~~~ ./libmaus2/util/AtomicArray.hpp:45:43: note: remove the ‘< >’ In file included from ./libmaus2/suffixsort/bwtb3m/BwtMergeIsaParallelBase.hpp:24: ./libmaus2/suffixsort/GapArrayByte.hpp: In member function ‘void libmaus2::suffixsort::GapArrayByte::flush()’: ./libmaus2/suffixsort/GapArrayByte.hpp:134:42: warning: variable ‘overflowcnt’ set but not used [-Wunused-but-set-variable=] 134 | uint64_t overflowcnt = 0; | ^~~~~~~~~~~ In file included from ./libmaus2/suffixsort/BwtMergeTempFileNameSet.hpp:27, from ./libmaus2/suffixsort/BwtMergeBlockSortResult.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:33: ./libmaus2/util/DirectoryStructure.hpp: In member function ‘std::string libmaus2::util::DirectoryStructure::printGenerate(std::ostream&, std::string, uint64_t) const’: ./libmaus2/util/DirectoryStructure.hpp:207:58: warning: variable ‘batchcnt’ set but not used [-Wunused-but-set-variable=] 207 | uint64_t batchcnt = 0; | ^~~~~~~~ ./libmaus2/util/DirectoryStructure.hpp: In member function ‘std::string libmaus2::util::DirectoryStructure::printRemove(std::ostream&, std::string, uint64_t) const’: ./libmaus2/util/DirectoryStructure.hpp:282:58: warning: variable ‘batchcnt’ set but not used [-Wunused-but-set-variable=] 282 | uint64_t batchcnt = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:183, from ./libmaus2/huffman/CanonicalEncoder.hpp:26, from ./libmaus2/huffman/RLEncoder.hpp:25, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22: ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 2]’: ./libmaus2/huffman/HuffmanSorting.hpp:860:55: required from here 860 | huffman::EncodeTable enctable ( root ); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:188: ./libmaus2/huffman/HuffmanSorting.hpp: In instantiation of ‘static void libmaus2::huffman::HuffmanSorting::uncompressHuffmanCoded(uint64_t*, uint64_t, uint64_t, uint64_t, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::HuffmanTreeNode*, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::EncodeTable&) [with unsigned int lookupwords = 2; uint64_t = long long unsigned int]’: ./libmaus2/huffman/HuffmanSorting.hpp:1091:27: required from here 1091 | uncompressHuffmanCoded(acode.get(), 0 /* bit offset */, lowhalf /* syms */, firsthighsym, enctable,dectable,root.get(),dectable0,dectable1,enctable0,enctable1); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/huffman/HuffmanSorting.hpp:534:42: warning: variable ‘alldecoffset’ set but not used [-Wunused-but-set-variable=] 534 | uint64_t alldecoffset = highdecoffset; | ^~~~~~~~~~~~ ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 1]’: ./libmaus2/huffman/CanonicalEncoder.hpp:219:116: required from here 219 | return ::libmaus2::huffman::EncodeTable<1>::unique_ptr_type(new ::libmaus2::huffman::EncodeTable<1>(Ptree.get())); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/wavelet/RlToHwtBase.hpp:30, from ./libmaus2/wavelet/RlToHwtTermRequest.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:44: ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp: In instantiation of ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTree(libmaus2::autoarray::AutoArray&, const std::string&, const std::string&, const libmaus2::huffman::HuffmanTree*, uint64_t) [with bool radixsort = true; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’: ./libmaus2/suffixsort/BwtMergeBlockSortRequest.hpp:862:90: required from ‘libmaus2::suffixsort::BwtMergeBlockSortResult libmaus2::suffixsort::BwtMergeBlockSortRequest::sortBlock(std::ostream*) const [with input_types_type = libmaus2::suffixsort::ByteInputTypes<32>; rl_encoder = libmaus2::huffman::RLEncoderTemplate, libmaus2::bitio::FastWriteBitWriterTemplate >, 128, 255, false> > >; std::ostream = std::basic_ostream]’ 862 | ::libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTree( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 863 | UT,tmpfilenames.getHWT(),tmpfileprefix,uhnode.get(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 864 | 1/* num threads */ | ~~~~~~~~~~~~~~~~~~ 865 | ); | ~ ./libmaus2/suffixsort/BwtMergeBlockSortRequest.hpp:979:79: required from ‘std::string libmaus2::suffixsort::BwtMergeBlockSortRequest::dispatch(std::ostream*) const [with rl_encoder = libmaus2::huffman::RLEncoderTemplate, libmaus2::bitio::FastWriteBitWriterTemplate >, 128, 255, false> > >; std::string = std::__cxx11::basic_string; std::ostream = std::basic_ostream]’ 979 | result = sortBlock,rl_encoder>(logstr); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BaseBlockSortThread.hpp:128:118: required from here 128 | block->sortresult = ::libmaus2::suffixsort::BwtMergeBlockSortResult::load(block->sortreq.dispatch(logstr)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:874:90: warning: variable ‘l_numsyms0’ set but not used [-Wunused-but-set-variable=] 874 | uint64_t l_numsyms0 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:879:90: warning: variable ‘r_numsyms1’ set but not used [-Wunused-but-set-variable=] 879 | uint64_t r_numsyms1 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:755:66: warning: variable ‘numsyms1’ set but not used [-Wunused-but-set-variable=] 755 | uint64_t numsyms1 = 0; | ^~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp: In instantiation of ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRl(const std::string&, const std::string&, const std::string&, const libmaus2::huffman::HuffmanTree&, uint64_t, uint64_t) [with rl_decoder = libmaus2::huffman::RLDecoder; bool radixsort = true; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1368:123: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwt(const std::string&, const std::string&, std::string, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’ 1368 | ::libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRl( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 1369 | bwt,hwt,tmpprefix,H, | ~~~~~~~~~~~~~~~~~~~~ 1370 | utf8WaveletMaxPartMem() /* part size maximum */, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1371 | utf8WaveletMaxThreads()); | ~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:4191:65: required from ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeBwt(const libmaus2::suffixsort::bwtb3m::BwtMergeSortOptions&, std::ostream*) [with input_types_type = libmaus2::suffixsort::PacInputTypes<64>; std::ostream = std::basic_ostream]’ 4191 | libmaus2::wavelet::RlToHwtBase::rlToHwt(options.outfn, outhwt, options.tmpfilenamebase+"_finalhwttmp",options.numthreads) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplatePac64.cpp:22:47: required from here 22 | template struct libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate< libmaus2::suffixsort::PacInputTypes<64> >; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1419:90: warning: variable ‘l_numsyms0’ set but not used [-Wunused-but-set-variable=] 1419 | uint64_t l_numsyms0 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1424:90: warning: variable ‘r_numsyms1’ set but not used [-Wunused-but-set-variable=] 1424 | uint64_t r_numsyms1 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1299:66: warning: variable ‘numsyms1’ set but not used [-Wunused-but-set-variable=] 1299 | uint64_t numsyms1 = 0; | ^~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp: In instantiation of ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRlWithTerm(const std::vector >&, const std::string&, const std::string&, const libmaus2::huffman::HuffmanTree&, uint64_t, uint64_t, uint64_t, uint64_t) [with rl_decoder = libmaus2::huffman::RLDecoder; bool radixsort = true; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1500:131: required from ‘static void libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtTerm(const std::vector >&, const std::string&, std::string, libmaus2::huffman::HuffmanTree&, uint64_t, uint64_t, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’ 1500 | ::libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRlWithTerm( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 1501 | bwt,hwt,tmpprefix,H,p0r,bwtterm, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1502 | utf8WaveletMaxPartMem() /* maximum part size */, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1503 | utf8WaveletMaxThreads() | ~~~~~~~~~~~~~~~~~~~~~~~ 1504 | ); | ~ ./libmaus2/wavelet/RlToHwtBase.hpp:1687:17: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtTerm(const std::vector >&, const std::string&, std::string, std::string, uint64_t, uint64_t, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’ 1687 | rlToHwtTerm(bwt,hwt,tmpprefix,H,bwtterm,p0r,numthreads); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/wavelet/RlToHwtTermRequest.hpp:118:67: required from ‘libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtTermRequest::dispatch() [with rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >]’ 118 | libmaus2::wavelet::RlToHwtBase::rlToHwtTerm(bwt,hwt,tmpprefix,huftreefilename,bwtterm,p0r,numthreads) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:926:102: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::ensureWaveletTreeGenerated(const libmaus2::suffixsort::BwtMergeBlockSortResult&, std::ostream*) [with input_types_type = libmaus2::suffixsort::PacInputTypes<64>; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::ostream = std::basic_ostream]’ 926 | libmaus2::wavelet::ImpCompactHuffmanWaveletTree::unique_ptr_type ptr(ureq->dispatch()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~ libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplatePac64.cpp:22:47: required from here 22 | template struct libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate< libmaus2::suffixsort::PacInputTypes<64> >; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:2048:90: warning: variable ‘l_numsyms0’ set but not used [-Wunused-but-set-variable=] 2048 | uint64_t l_numsyms0 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:2053:90: warning: variable ‘r_numsyms1’ set but not used [-Wunused-but-set-variable=] 2053 | uint64_t r_numsyms1 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1929:66: warning: variable ‘numsyms1’ set but not used [-Wunused-but-set-variable=] 1929 | uint64_t numsyms1 = 0; | ^~~~~~~~ libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplatePac64.cpp -o libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplatePac64.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplateUtf864.lo `test -f 'libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateUtf864.cpp' || echo './'`libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateUtf864.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateUtf864.cpp -fPIC -DPIC -o libmaus2/suffixsort/bwtb3m/.libs/la-BwtMergeSortTemplateUtf864.o In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/util/IntervalTree.hpp:25, from ./libmaus2/gamma/GammaRLDecoder.hpp:28, from ./libmaus2/gamma/GammaRLEncoder.hpp:29, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:24, from ./libmaus2/suffixsort/bwtb3m/BwtMergeComputeSampledSA.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateUtf864.cpp:20: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/suffixsort/bwtb3m/GapArrayWrapper.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeIsaParallelBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:24: ./libmaus2/util/AtomicArray.hpp: At global scope: ./libmaus2/util/AtomicArray.hpp:45:43: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 45 | AtomicArray(AtomicArray const & O) = delete; | ^~~~~~~~~~~~~~~~~ ./libmaus2/util/AtomicArray.hpp:45:43: note: remove the ‘< >’ In file included from ./libmaus2/suffixsort/bwtb3m/BwtMergeIsaParallelBase.hpp:24: ./libmaus2/suffixsort/GapArrayByte.hpp: In member function ‘void libmaus2::suffixsort::GapArrayByte::flush()’: ./libmaus2/suffixsort/GapArrayByte.hpp:134:42: warning: variable ‘overflowcnt’ set but not used [-Wunused-but-set-variable=] 134 | uint64_t overflowcnt = 0; | ^~~~~~~~~~~ In file included from ./libmaus2/suffixsort/BwtMergeTempFileNameSet.hpp:27, from ./libmaus2/suffixsort/BwtMergeBlockSortResult.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:33: ./libmaus2/util/DirectoryStructure.hpp: In member function ‘std::string libmaus2::util::DirectoryStructure::printGenerate(std::ostream&, std::string, uint64_t) const’: ./libmaus2/util/DirectoryStructure.hpp:207:58: warning: variable ‘batchcnt’ set but not used [-Wunused-but-set-variable=] 207 | uint64_t batchcnt = 0; | ^~~~~~~~ ./libmaus2/util/DirectoryStructure.hpp: In member function ‘std::string libmaus2::util::DirectoryStructure::printRemove(std::ostream&, std::string, uint64_t) const’: ./libmaus2/util/DirectoryStructure.hpp:282:58: warning: variable ‘batchcnt’ set but not used [-Wunused-but-set-variable=] 282 | uint64_t batchcnt = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:183, from ./libmaus2/huffman/CanonicalEncoder.hpp:26, from ./libmaus2/huffman/RLEncoder.hpp:25, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22: ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 2]’: ./libmaus2/huffman/HuffmanSorting.hpp:860:55: required from here 860 | huffman::EncodeTable enctable ( root ); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:188: ./libmaus2/huffman/HuffmanSorting.hpp: In instantiation of ‘static void libmaus2::huffman::HuffmanSorting::uncompressHuffmanCoded(uint64_t*, uint64_t, uint64_t, uint64_t, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::HuffmanTreeNode*, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::EncodeTable&) [with unsigned int lookupwords = 2; uint64_t = long long unsigned int]’: ./libmaus2/huffman/HuffmanSorting.hpp:1091:27: required from here 1091 | uncompressHuffmanCoded(acode.get(), 0 /* bit offset */, lowhalf /* syms */, firsthighsym, enctable,dectable,root.get(),dectable0,dectable1,enctable0,enctable1); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/huffman/HuffmanSorting.hpp:534:42: warning: variable ‘alldecoffset’ set but not used [-Wunused-but-set-variable=] 534 | uint64_t alldecoffset = highdecoffset; | ^~~~~~~~~~~~ ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 1]’: ./libmaus2/huffman/CanonicalEncoder.hpp:219:116: required from here 219 | return ::libmaus2::huffman::EncodeTable<1>::unique_ptr_type(new ::libmaus2::huffman::EncodeTable<1>(Ptree.get())); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/wavelet/RlToHwtBase.hpp:30, from ./libmaus2/wavelet/RlToHwtTermRequest.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:44: ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp: In instantiation of ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTree(libmaus2::autoarray::AutoArray&, const std::string&, const std::string&, const libmaus2::huffman::HuffmanTree*, uint64_t) [with bool radixsort = true; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’: ./libmaus2/suffixsort/BwtMergeBlockSortRequest.hpp:862:90: required from ‘libmaus2::suffixsort::BwtMergeBlockSortResult libmaus2::suffixsort::BwtMergeBlockSortRequest::sortBlock(std::ostream*) const [with input_types_type = libmaus2::suffixsort::ByteInputTypes<32>; rl_encoder = libmaus2::huffman::RLEncoderTemplate, libmaus2::bitio::FastWriteBitWriterTemplate >, 128, 255, false> > >; std::ostream = std::basic_ostream]’ 862 | ::libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTree( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 863 | UT,tmpfilenames.getHWT(),tmpfileprefix,uhnode.get(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 864 | 1/* num threads */ | ~~~~~~~~~~~~~~~~~~ 865 | ); | ~ ./libmaus2/suffixsort/BwtMergeBlockSortRequest.hpp:979:79: required from ‘std::string libmaus2::suffixsort::BwtMergeBlockSortRequest::dispatch(std::ostream*) const [with rl_encoder = libmaus2::huffman::RLEncoderTemplate, libmaus2::bitio::FastWriteBitWriterTemplate >, 128, 255, false> > >; std::string = std::__cxx11::basic_string; std::ostream = std::basic_ostream]’ 979 | result = sortBlock,rl_encoder>(logstr); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BaseBlockSortThread.hpp:128:118: required from here 128 | block->sortresult = ::libmaus2::suffixsort::BwtMergeBlockSortResult::load(block->sortreq.dispatch(logstr)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:874:90: warning: variable ‘l_numsyms0’ set but not used [-Wunused-but-set-variable=] 874 | uint64_t l_numsyms0 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:879:90: warning: variable ‘r_numsyms1’ set but not used [-Wunused-but-set-variable=] 879 | uint64_t r_numsyms1 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:755:66: warning: variable ‘numsyms1’ set but not used [-Wunused-but-set-variable=] 755 | uint64_t numsyms1 = 0; | ^~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp: In instantiation of ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRl(const std::string&, const std::string&, const std::string&, const libmaus2::huffman::HuffmanTree&, uint64_t, uint64_t) [with rl_decoder = libmaus2::huffman::RLDecoder; bool radixsort = true; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1368:123: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwt(const std::string&, const std::string&, std::string, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’ 1368 | ::libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRl( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 1369 | bwt,hwt,tmpprefix,H, | ~~~~~~~~~~~~~~~~~~~~ 1370 | utf8WaveletMaxPartMem() /* part size maximum */, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1371 | utf8WaveletMaxThreads()); | ~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:4191:65: required from ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeBwt(const libmaus2::suffixsort::bwtb3m::BwtMergeSortOptions&, std::ostream*) [with input_types_type = libmaus2::suffixsort::Utf8InputTypes<64>; std::ostream = std::basic_ostream]’ 4191 | libmaus2::wavelet::RlToHwtBase::rlToHwt(options.outfn, outhwt, options.tmpfilenamebase+"_finalhwttmp",options.numthreads) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateUtf864.cpp:22:47: required from here 22 | template struct libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate< libmaus2::suffixsort::Utf8InputTypes<64> >; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1419:90: warning: variable ‘l_numsyms0’ set but not used [-Wunused-but-set-variable=] 1419 | uint64_t l_numsyms0 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1424:90: warning: variable ‘r_numsyms1’ set but not used [-Wunused-but-set-variable=] 1424 | uint64_t r_numsyms1 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1299:66: warning: variable ‘numsyms1’ set but not used [-Wunused-but-set-variable=] 1299 | uint64_t numsyms1 = 0; | ^~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp: In instantiation of ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRlWithTerm(const std::vector >&, const std::string&, const std::string&, const libmaus2::huffman::HuffmanTree&, uint64_t, uint64_t, uint64_t, uint64_t) [with rl_decoder = libmaus2::huffman::RLDecoder; bool radixsort = true; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1500:131: required from ‘static void libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtTerm(const std::vector >&, const std::string&, std::string, libmaus2::huffman::HuffmanTree&, uint64_t, uint64_t, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’ 1500 | ::libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRlWithTerm( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 1501 | bwt,hwt,tmpprefix,H,p0r,bwtterm, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1502 | utf8WaveletMaxPartMem() /* maximum part size */, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1503 | utf8WaveletMaxThreads() | ~~~~~~~~~~~~~~~~~~~~~~~ 1504 | ); | ~ ./libmaus2/wavelet/RlToHwtBase.hpp:1687:17: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtTerm(const std::vector >&, const std::string&, std::string, std::string, uint64_t, uint64_t, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’ 1687 | rlToHwtTerm(bwt,hwt,tmpprefix,H,bwtterm,p0r,numthreads); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/wavelet/RlToHwtTermRequest.hpp:118:67: required from ‘libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtTermRequest::dispatch() [with rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >]’ 118 | libmaus2::wavelet::RlToHwtBase::rlToHwtTerm(bwt,hwt,tmpprefix,huftreefilename,bwtterm,p0r,numthreads) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:926:102: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::ensureWaveletTreeGenerated(const libmaus2::suffixsort::BwtMergeBlockSortResult&, std::ostream*) [with input_types_type = libmaus2::suffixsort::Utf8InputTypes<64>; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::ostream = std::basic_ostream]’ 926 | libmaus2::wavelet::ImpCompactHuffmanWaveletTree::unique_ptr_type ptr(ureq->dispatch()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~ libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateUtf864.cpp:22:47: required from here 22 | template struct libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate< libmaus2::suffixsort::Utf8InputTypes<64> >; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:2048:90: warning: variable ‘l_numsyms0’ set but not used [-Wunused-but-set-variable=] 2048 | uint64_t l_numsyms0 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:2053:90: warning: variable ‘r_numsyms1’ set but not used [-Wunused-but-set-variable=] 2053 | uint64_t r_numsyms1 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1929:66: warning: variable ‘numsyms1’ set but not used [-Wunused-but-set-variable=] 1929 | uint64_t numsyms1 = 0; | ^~~~~~~~ libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateUtf864.cpp -o libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplateUtf864.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/suffixsort/bwtb3m/la-BwtMergeComputeSampledSA.lo `test -f 'libmaus2/suffixsort/bwtb3m/BwtMergeComputeSampledSA.cpp' || echo './'`libmaus2/suffixsort/bwtb3m/BwtMergeComputeSampledSA.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtMergeComputeSampledSA.cpp -fPIC -DPIC -o libmaus2/suffixsort/bwtb3m/.libs/la-BwtMergeComputeSampledSA.o In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/util/IntervalTree.hpp:25, from ./libmaus2/gamma/GammaRLDecoder.hpp:28, from ./libmaus2/gamma/GammaRLEncoder.hpp:29, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:24, from ./libmaus2/suffixsort/bwtb3m/BwtMergeComputeSampledSA.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeComputeSampledSA.cpp:20: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/huffman/huffman.hpp:183, from ./libmaus2/huffman/CanonicalEncoder.hpp:26, from ./libmaus2/huffman/RLEncoder.hpp:25, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22: ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 2]’: ./libmaus2/huffman/HuffmanSorting.hpp:860:55: required from here 860 | huffman::EncodeTable enctable ( root ); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:188: ./libmaus2/huffman/HuffmanSorting.hpp: In instantiation of ‘static void libmaus2::huffman::HuffmanSorting::uncompressHuffmanCoded(uint64_t*, uint64_t, uint64_t, uint64_t, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::HuffmanTreeNode*, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::EncodeTable&) [with unsigned int lookupwords = 2; uint64_t = long long unsigned int]’: ./libmaus2/huffman/HuffmanSorting.hpp:1091:27: required from here 1091 | uncompressHuffmanCoded(acode.get(), 0 /* bit offset */, lowhalf /* syms */, firsthighsym, enctable,dectable,root.get(),dectable0,dectable1,enctable0,enctable1); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/huffman/HuffmanSorting.hpp:534:42: warning: variable ‘alldecoffset’ set but not used [-Wunused-but-set-variable=] 534 | uint64_t alldecoffset = highdecoffset; | ^~~~~~~~~~~~ ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 1]’: ./libmaus2/huffman/CanonicalEncoder.hpp:219:116: required from here 219 | return ::libmaus2::huffman::EncodeTable<1>::unique_ptr_type(new ::libmaus2::huffman::EncodeTable<1>(Ptree.get())); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtMergeComputeSampledSA.cpp -o libmaus2/suffixsort/bwtb3m/la-BwtMergeComputeSampledSA.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/parallel/la-SimpleThreadWorkPackage.lo `test -f 'libmaus2/parallel/SimpleThreadWorkPackage.cpp' || echo './'`libmaus2/parallel/SimpleThreadWorkPackage.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/parallel/SimpleThreadWorkPackage.cpp -fPIC -DPIC -o libmaus2/parallel/.libs/la-SimpleThreadWorkPackage.o libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/parallel/SimpleThreadWorkPackage.cpp -o libmaus2/parallel/la-SimpleThreadWorkPackage.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/parallel/la-StdSemaphore.lo `test -f 'libmaus2/parallel/StdSemaphore.cpp' || echo './'`libmaus2/parallel/StdSemaphore.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/parallel/StdSemaphore.cpp -fPIC -DPIC -o 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libmaus2/arch/I386Features.cpp -fPIC -DPIC -o libmaus2/arch/.libs/la-I386Features.o libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/arch/I386Features.cpp -o libmaus2/arch/la-I386Features.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/arch/la-CacheLineSize.lo `test -f 'libmaus2/arch/CacheLineSize.cpp' || echo './'`libmaus2/arch/CacheLineSize.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/arch/CacheLineSize.cpp -fPIC -DPIC -o libmaus2/arch/.libs/la-CacheLineSize.o libmaus2/arch/CacheLineSize.cpp: In function ‘uint64_t getCacheLineSizeLocal()’: libmaus2/arch/CacheLineSize.cpp:50:30: warning: format ‘%d’ expects argument of type ‘int*’, but argument 3 has type ‘uint64_t*’ {aka ‘long long unsigned int*’} [-Wformat=] 50 | fscanf(fp, "%d", &i); | ~^ ~~ | | | | | uint64_t* {aka long long unsigned int*} | int* | %lld libmaus2/arch/CacheLineSize.cpp:50:23: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 50 | fscanf(fp, "%d", &i); | ~~~~~~^~~~~~~~~~~~~~ libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/arch/CacheLineSize.cpp -o libmaus2/arch/la-CacheLineSize.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/arch/la-PageSize.lo `test -f 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-DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -mssse3 -msse4.1 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lcs/SimdX86GlobalAlignmentConstants128.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/simd_align_128_la-SimdX86GlobalAlignmentConstants128.o libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -mssse3 -msse4.1 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lcs/SimdX86GlobalAlignmentConstants128.cpp -o libmaus2/lcs/simd_align_128_la-SimdX86GlobalAlignmentConstants128.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile 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libmaus2/lcs/simd_align_128_la-SimdX86GlobalAlignmentX128_16.lo libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la -lz libtool: link: i686-linux-gnu-g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc-cross/i686-linux-gnu/16/../../../../i686-linux-gnu/lib/../lib/crti.o /usr/lib/gcc-cross/i686-linux-gnu/16/crtbeginS.o libmaus2/lcs/.libs/simd_align_128_la-SimdX86GlobalAlignmentConstants128.o libmaus2/lcs/.libs/simd_align_128_la-SimdX86BandedGlobalAlignmentX128_8.o libmaus2/lcs/.libs/simd_align_128_la-SimdX86BandedGlobalAlignmentX128_16.o libmaus2/lcs/.libs/simd_align_128_la-SimdX86GlobalAlignmentX128_8.o libmaus2/lcs/.libs/simd_align_128_la-SimdX86GlobalAlignmentX128_16.o -Wl,-rpath -Wl,/build/reproducible-path/libmaus2-2.0.813+ds/src/.libs ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so 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libmaus2/lcs/simd_align_256_la-SimdX86BandedGlobalAlignmentScoreY256_16.lo `test -f 'libmaus2/lcs/SimdX86BandedGlobalAlignmentScoreY256_16.cpp' || echo './'`libmaus2/lcs/SimdX86BandedGlobalAlignmentScoreY256_16.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -mssse3 -msse4.1 -mavx2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lcs/SimdX86BandedGlobalAlignmentScoreY256_16.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/simd_align_256_la-SimdX86BandedGlobalAlignmentScoreY256_16.o libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -mssse3 -msse4.1 -mavx2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lcs/SimdX86BandedGlobalAlignmentScoreY256_16.cpp -o libmaus2/lcs/simd_align_256_la-SimdX86BandedGlobalAlignmentScoreY256_16.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -mssse3 -msse4.1 -mavx2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/lcs/simd_align_256_la-SimdX86GlobalAlignmentY256_8.lo `test -f 'libmaus2/lcs/SimdX86GlobalAlignmentY256_8.cpp' || echo './'`libmaus2/lcs/SimdX86GlobalAlignmentY256_8.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -mssse3 -msse4.1 -mavx2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lcs/SimdX86GlobalAlignmentY256_8.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/simd_align_256_la-SimdX86GlobalAlignmentY256_8.o libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -mssse3 -msse4.1 -mavx2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lcs/SimdX86GlobalAlignmentY256_8.cpp -o libmaus2/lcs/simd_align_256_la-SimdX86GlobalAlignmentY256_8.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -mssse3 -msse4.1 -mavx2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/lcs/simd_align_256_la-SimdX86GlobalAlignmentY256_16.lo `test -f 'libmaus2/lcs/SimdX86GlobalAlignmentY256_16.cpp' || echo './'`libmaus2/lcs/SimdX86GlobalAlignmentY256_16.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -mssse3 -msse4.1 -mavx2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lcs/SimdX86GlobalAlignmentY256_16.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/simd_align_256_la-SimdX86GlobalAlignmentY256_16.o libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -mssse3 -msse4.1 -mavx2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lcs/SimdX86GlobalAlignmentY256_16.cpp -o libmaus2/lcs/simd_align_256_la-SimdX86GlobalAlignmentY256_16.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -mssse3 -msse4.1 -mavx2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/lcs/simd_align_256_la-AlignmentOneAgainstManyAVX2.lo `test -f 'libmaus2/lcs/AlignmentOneAgainstManyAVX2.cpp' || echo './'`libmaus2/lcs/AlignmentOneAgainstManyAVX2.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -mssse3 -msse4.1 -mavx2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lcs/AlignmentOneAgainstManyAVX2.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/simd_align_256_la-AlignmentOneAgainstManyAVX2.o In file included from ./libmaus2/lcs/Aligner.hpp:21, from ./libmaus2/lcs/NP.hpp:21, from ./libmaus2/lcs/AlignmentOneAgainstManyAVX2.hpp:23, from libmaus2/lcs/AlignmentOneAgainstManyAVX2.cpp:19: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -mssse3 -msse4.1 -mavx2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lcs/AlignmentOneAgainstManyAVX2.cpp -o libmaus2/lcs/simd_align_256_la-AlignmentOneAgainstManyAVX2.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=link i686-linux-gnu-g++ -msse2 -mssse3 -msse4.1 -mavx2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -version-info 2:813:0 -Wl,-z,relro -Wl,-z,now -o libmaus2_simd_align_256.la -rpath /usr/lib/i386-linux-gnu libmaus2/lcs/simd_align_256_la-SimdX86GlobalAlignmentConstants256.lo libmaus2/lcs/simd_align_256_la-SimdX86BandedGlobalAlignmentY256_8.lo libmaus2/lcs/simd_align_256_la-SimdX86BandedGlobalAlignmentY256_16.lo libmaus2/lcs/simd_align_256_la-SimdX86BandedGlobalAlignmentScoreY256_16.lo libmaus2/lcs/simd_align_256_la-SimdX86GlobalAlignmentY256_8.lo libmaus2/lcs/simd_align_256_la-SimdX86GlobalAlignmentY256_16.lo libmaus2/lcs/simd_align_256_la-AlignmentOneAgainstManyAVX2.lo libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la -lz libtool: link: i686-linux-gnu-g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc-cross/i686-linux-gnu/16/../../../../i686-linux-gnu/lib/../lib/crti.o /usr/lib/gcc-cross/i686-linux-gnu/16/crtbeginS.o libmaus2/lcs/.libs/simd_align_256_la-SimdX86GlobalAlignmentConstants256.o libmaus2/lcs/.libs/simd_align_256_la-SimdX86BandedGlobalAlignmentY256_8.o libmaus2/lcs/.libs/simd_align_256_la-SimdX86BandedGlobalAlignmentY256_16.o libmaus2/lcs/.libs/simd_align_256_la-SimdX86BandedGlobalAlignmentScoreY256_16.o libmaus2/lcs/.libs/simd_align_256_la-SimdX86GlobalAlignmentY256_8.o libmaus2/lcs/.libs/simd_align_256_la-SimdX86GlobalAlignmentY256_16.o libmaus2/lcs/.libs/simd_align_256_la-AlignmentOneAgainstManyAVX2.o -Wl,-rpath -Wl,/build/reproducible-path/libmaus2-2.0.813+ds/src/.libs ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so -lz -L/usr/lib/gcc-cross/i686-linux-gnu/16 -L/usr/lib/gcc-cross/i686-linux-gnu/16/../../../../i686-linux-gnu/lib/../lib -L/lib/i386-linux-gnu -L/lib/../lib -L/usr/lib/i386-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc-cross/i686-linux-gnu/16/../../../../i686-linux-gnu/lib -L/lib -L/usr/lib -lstdc++ -lm -lgcc_s -latomic_asneeded -lc -lgcc_s /usr/lib/gcc-cross/i686-linux-gnu/16/crtendS.o /usr/lib/gcc-cross/i686-linux-gnu/16/../../../../i686-linux-gnu/lib/../lib/crtn.o -msse2 -mssse3 -msse4.1 -mavx2 -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-z -Wl,relro -Wl,-z -Wl,now -pthread -fopenmp -Wl,-soname -Wl,libmaus2_simd_align_256.so.2 -o .libs/libmaus2_simd_align_256.so.2.0.813 libtool: link: (cd ".libs" && rm -f "libmaus2_simd_align_256.so.2" && ln -s "libmaus2_simd_align_256.so.2.0.813" "libmaus2_simd_align_256.so.2") libtool: link: (cd ".libs" && rm -f "libmaus2_simd_align_256.so" && ln -s "libmaus2_simd_align_256.so.2.0.813" "libmaus2_simd_align_256.so") libtool: link: i686-linux-gnu-ar cr .libs/libmaus2_simd_align_256.a libmaus2/lcs/simd_align_256_la-SimdX86GlobalAlignmentConstants256.o libmaus2/lcs/simd_align_256_la-SimdX86BandedGlobalAlignmentY256_8.o libmaus2/lcs/simd_align_256_la-SimdX86BandedGlobalAlignmentY256_16.o libmaus2/lcs/simd_align_256_la-SimdX86BandedGlobalAlignmentScoreY256_16.o libmaus2/lcs/simd_align_256_la-SimdX86GlobalAlignmentY256_8.o libmaus2/lcs/simd_align_256_la-SimdX86GlobalAlignmentY256_16.o libmaus2/lcs/simd_align_256_la-AlignmentOneAgainstManyAVX2.o libtool: link: i686-linux-gnu-ranlib .libs/libmaus2_simd_align_256.a libtool: link: ( cd ".libs" && rm -f "libmaus2_simd_align_256.la" && ln -s "../libmaus2_simd_align_256.la" "libmaus2_simd_align_256.la" ) /bin/bash ../libtool --tag=CXX --mode=link i686-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testThreadPool test/testThreadPool-testThreadPool.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: i686-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testThreadPool test/testThreadPool-testThreadPool.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread /usr/bin/i686-linux-gnu-ld.bfd: ./.libs/libmaus2.so: undefined reference to `libmaus2::posix::PosixFunctions::fstatSizeAndMode(int, long long&, unsigned char*)' collect2: error: ld returned 1 exit status make[3]: *** [Makefile:7070: testThreadPool] Error 1 make[3]: Leaving directory '/build/reproducible-path/libmaus2-2.0.813+ds/src' make[2]: *** [Makefile:687: all-recursive] Error 1 make[2]: Leaving directory '/build/reproducible-path/libmaus2-2.0.813+ds' make[1]: *** [Makefile:571: all] Error 2 make[1]: Leaving directory '/build/reproducible-path/libmaus2-2.0.813+ds' dh_auto_build: error: make -j1 returned exit code 2 make: *** [debian/rules:16: binary-arch] Error 25 dpkg-buildpackage: error: debian/rules binary-arch subprocess failed with exit status 2 -------------------------------------------------------------------------------- Build finished at 2026-09-09T10:26:46Z +------------------------------------------------------------------------------+ | Finished Timed Build Commands Wed, 09 Sep 2026 10:26:46 +0000 | +------------------------------------------------------------------------------+ rm -Rf /build/reproducible-path/libmaus2-2.0.813+ds/ ---------------------------------------------------- I: Finished running 'rm -Rf /build/reproducible-path/libmaus2-2.0.813+ds/'. Finished processing commands. -------------------------------------------------------------------------------- Finished -------- +------------------------------------------------------------------------------+ | Cleanup Wed, 09 Sep 2026 10:26:47 +0000 | +------------------------------------------------------------------------------+ Purging /build/reproducible-path Not cleaning session: cloned chroot in use E: Build failure (dpkg-buildpackage died with exit 2) +------------------------------------------------------------------------------+ | Summary Wed, 09 Sep 2026 10:26:52 +0000 | +------------------------------------------------------------------------------+ Build Architecture: arm64 Build Profiles: cross nocheck Build Type: any Build-Space: n/a Build-Time: 14772 Distribution: unstable Fail-Stage: build Foreign Architectures: i386 Host Architecture: i386 Install-Time: 84 Job: libmaus2_2.0.813+ds-6 Machine Architecture: arm64 Package: libmaus2 Package-Time: 14911 Source-Version: 2.0.813+ds-6 Space: n/a Status: attempted Version: 2.0.813+ds-6 -------------------------------------------------------------------------------- Finished at 2026-09-09T10:26:46Z Build needed 04:08:31, no disk space