sbuild (Debian sbuild) 0.89.3+deb13u4 (28 December 2025) on debian-ci-siliconvalley +==============================================================================+ | libmaus2 2.0.813+ds-6 (ppc64el) Wed, 02 Sep 2026 15:42:45 +0000 | +==============================================================================+ Package: libmaus2 Version: 2.0.813+ds-6 Source Version: 2.0.813+ds-6 Distribution: unstable Machine Architecture: amd64 Host Architecture: ppc64el Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: Unpacking /home/crossqa/.cache/sbuild/unstable-amd64-sbuild.tar.zst to /tmp/tmp.sbuild.A2fzCfYGCw... I: Setting up the chroot... I: Creating chroot session... I: Setting up log color... I: Setting up apt archive... +------------------------------------------------------------------------------+ | Update chroot Wed, 02 Sep 2026 15:42:50 +0000 | +------------------------------------------------------------------------------+ Get:1 http://localhost:3142/debian unstable InRelease [193 kB] Get:2 http://localhost:3142/debian unstable/main Sources [11.9 MB] Get:3 http://localhost:3142/debian unstable/main ppc64el Packages [10.5 MB] Get:4 http://localhost:3142/debian unstable/main amd64 Packages [10.8 MB] Fetched 33.4 MB in 3s (12.9 MB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: libpcre2-8-0 libsystemd0 libudev1 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 972 kB of archives. After this operation, 119 kB of additional disk space will be used. Get:1 http://localhost:3142/debian unstable/main amd64 libpcre2-8-0 amd64 10.48-2 [312 kB] Get:2 http://localhost:3142/debian unstable/main amd64 libsystemd0 amd64 262~rc1-2 [511 kB] Get:3 http://localhost:3142/debian unstable/main amd64 libudev1 amd64 262~rc1-2 [148 kB] Fetched 972 kB in 0s (19.1 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12107 files and directories currently installed.) Preparing to unpack .../libpcre2-8-0_10.48-2_amd64.deb ... Unpacking libpcre2-8-0:amd64 (10.48-2) over (10.48-1) ... Setting up libpcre2-8-0:amd64 (10.48-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12107 files and directories currently installed.) Preparing to unpack .../libsystemd0_262~rc1-2_amd64.deb ... Unpacking libsystemd0:amd64 (262~rc1-2) over (261.2-1) ... Setting up libsystemd0:amd64 (262~rc1-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12107 files and directories currently installed.) Preparing to unpack .../libudev1_262~rc1-2_amd64.deb ... Unpacking libudev1:amd64 (262~rc1-2) over (261.2-1) ... Setting up libudev1:amd64 (262~rc1-2) ... Processing triggers for libselinux1:amd64 (3.11-2) ... Processing triggers for libc-bin (2.43-4) ... +------------------------------------------------------------------------------+ | Fetch source files Wed, 02 Sep 2026 15:42:55 +0000 | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'libmaus2' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/libmaus2.git Please use: git clone https://salsa.debian.org/med-team/libmaus2.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 1669 kB of source archives. Get:1 http://localhost:3142/debian unstable/main libmaus2 2.0.813+ds-6 (dsc) [2315 B] Get:2 http://localhost:3142/debian unstable/main libmaus2 2.0.813+ds-6 (tar) [1656 kB] Get:3 http://localhost:3142/debian unstable/main libmaus2 2.0.813+ds-6 (diff) [10.3 kB] Fetched 1669 kB in 0s (3459 kB/s) Download complete and in download only mode +------------------------------------------------------------------------------+ | Install package build dependencies Wed, 02 Sep 2026 15:42:56 +0000 | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 14), d-shlibs, libboost-atomic-dev, libsecrecy-dev, pkgconf, zlib1g-dev, libc-dev, libstdc++-dev, build-essential:amd64, crossbuild-essential-ppc64el:amd64, apt-utils:amd64, libc-dev:ppc64el, libstdc++-dev:ppc64el Filtered Build-Depends: debhelper-compat (= 14), d-shlibs, libboost-atomic-dev, libsecrecy-dev, pkgconf, zlib1g-dev, libc-dev, libstdc++-dev, build-essential:amd64, crossbuild-essential-ppc64el:amd64, apt-utils:amd64, libc-dev:ppc64el, libstdc++-dev:ppc64el dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/build/reproducible-path/resolver-VqtiNL/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/build/reproducible-path/resolver-VqtiNL/apt_archive ./ InRelease Get:2 copy:/build/reproducible-path/resolver-VqtiNL/apt_archive ./ Release [609 B] Ign:3 copy:/build/reproducible-path/resolver-VqtiNL/apt_archive ./ Release.gpg Get:4 copy:/build/reproducible-path/resolver-VqtiNL/apt_archive ./ Sources [789 B] Get:5 copy:/build/reproducible-path/resolver-VqtiNL/apt_archive ./ Packages [834 B] Fetched 2232 B in 0s (0 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Execute external solver... The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-powerpc64le-linux-gnu bsdextrautils cpp-16-powerpc64le-linux-gnu cpp-powerpc64le-linux-gnu crossbuild-essential-ppc64el d-shlibs debhelper dh-autoreconf dh-strip-nondeterminism dirmngr dwz file g++-16-powerpc64le-linux-gnu g++-powerpc64le-linux-gnu gcc-16-base:ppc64el gcc-16-cross-base gcc-16-powerpc64le-linux-gnu gcc-16-powerpc64le-linux-gnu-base gcc-powerpc64le-linux-gnu gettext gettext-base gnupg gnupg-l10n gpg gpg-agent gpgconf gpgsm groff-base intltool-debian libarchive-zip-perl libasan8:ppc64el libasan8-ppc64el-cross libassuan-dev:ppc64el libassuan9 libassuan9:ppc64el libatomic1:ppc64el libatomic1-ppc64el-cross libboost-atomic-dev:ppc64el libboost-atomic1.90-dev:ppc64el libboost-atomic1.90.0:ppc64el libboost1.90-dev:ppc64el libc-gconv-modules-extra:ppc64el libc6:ppc64el libc6-dev:ppc64el libc6-dev-ppc64el-cross libc6-ppc64el-cross libdebhelper-perl libelf1t64 libffi8 libfile-stripnondeterminism-perl libgcc-16-dev:ppc64el libgcc-16-dev-ppc64el-cross libgcc-s1:ppc64el libgcc-s1-ppc64el-cross libgcrypt20 libgmp-dev:ppc64el libgmp10:ppc64el libgmpxx4ldbl:ppc64el libgnutls30t64 libgomp1:ppc64el libgomp1-ppc64el-cross libgpg-error-dev:ppc64el libgpg-error0 libgpg-error0:ppc64el libgpgme-dev:ppc64el libgpgme45:ppc64el libhogweed6t64:ppc64el libidn2-0 libitm1:ppc64el libitm1-ppc64el-cross libksba8 libldap2 liblsan0:ppc64el liblsan0-ppc64el-cross libmagic-mgc libmagic1t64 libncursesw6 libnettle8t64:ppc64el libnpth0t64 libp11-kit0 libpipeline1 libpkgconf7 libquadmath0:ppc64el libquadmath0-ppc64el-cross libreadline8t64 libsasl2-2 libsasl2-modules-db libsecrecy-dev:ppc64el libsqlite3-0 libstdc++-16-dev:ppc64el libstdc++-16-dev-ppc64el-cross libstdc++6:ppc64el libstdc++6-ppc64el-cross libtasn1-6 libtool libtsan2:ppc64el libtsan2-ppc64el-cross libubsan1:ppc64el libubsan1-ppc64el-cross libuchardet0 libunistring5 libxml2-16 linux-libc-dev-ppc64el-cross m4 man-db nettle-dev:ppc64el pinentry-curses pkgconf:ppc64el pkgconf-bin po-debconf readline-common sensible-utils zlib1g:ppc64el zlib1g-dev:ppc64el Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc gcc-16-locales cpp-16-doc cpp-doc dh-make dbus-user-session libpam-systemd pinentry-gnome3 tor gcc-16-doc manpages-dev flex bison gdb-powerpc64le-linux-gnu gcc-doc gettext-doc libasprintf-dev libgettextpo-dev gnulib-l10n gpg-wks-server parcimonie xloadimage scdaemon tpm2daemon groff libboost1.90-doc:ppc64el libboost-chrono1.90-dev:ppc64el libboost-container1.90-dev:ppc64el libboost-context1.90-dev:ppc64el libboost-contract1.90-dev:ppc64el libboost-coroutine1.90-dev:ppc64el libboost-date-time1.90-dev:ppc64el libboost-exception1.90-dev:ppc64el libboost-fiber1.90-dev:ppc64el libboost-filesystem1.90-dev:ppc64el libboost-graph-parallel1.90-dev:ppc64el libboost-graph1.90-dev:ppc64el libboost-iostreams1.90-dev:ppc64el libboost-json1.90-dev:ppc64el libboost-locale1.90-dev:ppc64el libboost-log1.90-dev:ppc64el libboost-math1.90-dev:ppc64el libboost-mpi-python1.90-dev:ppc64el libboost-mpi1.90-dev:ppc64el libboost-nowide1.90-dev:ppc64el libboost-numpy1.90-dev:ppc64el libboost-program-options1.90-dev:ppc64el libboost-python1.90-dev:ppc64el libboost-random1.90-dev:ppc64el libboost-regex1.90-dev:ppc64el libboost-serialization1.90-dev:ppc64el libboost-stacktrace1.90-dev:ppc64el libboost-test1.90-dev:ppc64el libboost-thread1.90-dev:ppc64el libboost-timer1.90-dev:ppc64el libboost-type-erasure1.90-dev:ppc64el libboost-url1.90-dev:ppc64el libboost-wave1.90-dev:ppc64el libboost1.90-tools-dev:ppc64el libmpfrc++-dev:ppc64el libntl-dev:ppc64el glibc-doc:ppc64el libc-l10n:ppc64el locales:ppc64el libnss-nis:ppc64el manpages-dev:ppc64el rng-tools gmp-doc:ppc64el libgmp10-doc:ppc64el libmpfr-dev:ppc64el gnutls-bin libstdc++-16-doc:ppc64el libtool-doc gfortran | fortran95-compiler m4-doc apparmor less www-browser pinentry-doc libmail-box-perl readline-doc Recommended packages: curl | wget | lynx python3:any gnupg-utils gpg-wks-client gpgv libidn2-0:ppc64el libarchive-cpio-perl libgpg-error-l10n libgpg-error-l10n:ppc64el gpg-wks-client:ppc64el libldap-common libgpm2 libsasl2-modules libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-powerpc64le-linux-gnu bsdextrautils cpp-16-powerpc64le-linux-gnu cpp-powerpc64le-linux-gnu crossbuild-essential-ppc64el d-shlibs debhelper dh-autoreconf dh-strip-nondeterminism dirmngr dwz file g++-16-powerpc64le-linux-gnu g++-powerpc64le-linux-gnu gcc-16-base:ppc64el gcc-16-cross-base gcc-16-powerpc64le-linux-gnu gcc-16-powerpc64le-linux-gnu-base gcc-powerpc64le-linux-gnu gettext gettext-base gnupg gnupg-l10n gpg gpg-agent gpgconf gpgsm groff-base intltool-debian libarchive-zip-perl libasan8:ppc64el libasan8-ppc64el-cross libassuan-dev:ppc64el libassuan9 libassuan9:ppc64el libatomic1:ppc64el libatomic1-ppc64el-cross libboost-atomic-dev:ppc64el libboost-atomic1.90-dev:ppc64el libboost-atomic1.90.0:ppc64el libboost1.90-dev:ppc64el libc-gconv-modules-extra:ppc64el libc6:ppc64el libc6-dev:ppc64el libc6-dev-ppc64el-cross libc6-ppc64el-cross libdebhelper-perl libelf1t64 libffi8 libfile-stripnondeterminism-perl libgcc-16-dev:ppc64el libgcc-16-dev-ppc64el-cross libgcc-s1:ppc64el libgcc-s1-ppc64el-cross libgcrypt20 libgmp-dev:ppc64el libgmp10:ppc64el libgmpxx4ldbl:ppc64el libgnutls30t64 libgomp1:ppc64el libgomp1-ppc64el-cross libgpg-error-dev:ppc64el libgpg-error0 libgpg-error0:ppc64el libgpgme-dev:ppc64el libgpgme45:ppc64el libhogweed6t64:ppc64el libidn2-0 libitm1:ppc64el libitm1-ppc64el-cross libksba8 libldap2 liblsan0:ppc64el liblsan0-ppc64el-cross libmagic-mgc libmagic1t64 libncursesw6 libnettle8t64:ppc64el libnpth0t64 libp11-kit0 libpipeline1 libpkgconf7 libquadmath0:ppc64el libquadmath0-ppc64el-cross libreadline8t64 libsasl2-2 libsasl2-modules-db libsecrecy-dev:ppc64el libsqlite3-0 libstdc++-16-dev:ppc64el libstdc++-16-dev-ppc64el-cross libstdc++6:ppc64el libstdc++6-ppc64el-cross libtasn1-6 libtool libtsan2:ppc64el libtsan2-ppc64el-cross libubsan1:ppc64el libubsan1-ppc64el-cross libuchardet0 libunistring5 libxml2-16 linux-libc-dev-ppc64el-cross m4 man-db nettle-dev:ppc64el pinentry-curses pkgconf:ppc64el pkgconf-bin po-debconf readline-common sbuild-build-depends-main-dummy:ppc64el sensible-utils zlib1g:ppc64el zlib1g-dev:ppc64el 0 upgraded, 119 newly installed, 0 to remove and 0 not upgraded. Need to get 391 MB of archives. After this operation, 1624 MB of additional disk space will be used. Get:1 copy:/build/reproducible-path/resolver-VqtiNL/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [940 B] Get:2 http://localhost:3142/debian unstable/main amd64 readline-common all 8.3-4 [74.8 kB] Get:3 http://localhost:3142/debian unstable/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get:4 http://localhost:3142/debian unstable/main amd64 libmagic-mgc amd64 1:5.47-4 [345 kB] Get:5 http://localhost:3142/debian unstable/main amd64 libmagic1t64 amd64 1:5.47-4 [111 kB] Get:6 http://localhost:3142/debian unstable/main amd64 file amd64 1:5.47-4 [43.0 kB] Get:7 http://localhost:3142/debian unstable/main amd64 gettext-base amd64 1.0-3 [332 kB] Get:8 http://localhost:3142/debian unstable/main amd64 libuchardet0 amd64 0.0.8-2+b2 [69.0 kB] Get:9 http://localhost:3142/debian unstable/main amd64 groff-base amd64 1.24.1-1 [1336 kB] Get:10 http://localhost:3142/debian unstable/main amd64 bsdextrautils amd64 2.42.2-4 [102 kB] Get:11 http://localhost:3142/debian unstable/main amd64 libpipeline1 amd64 1.5.8-3 [49.2 kB] Get:12 http://localhost:3142/debian unstable/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get:13 http://localhost:3142/debian unstable/main amd64 m4 amd64 1.4.21-1 [332 kB] Get:14 http://localhost:3142/debian unstable/main amd64 autoconf all 2.73-2 [516 kB] Get:15 http://localhost:3142/debian unstable/main amd64 autotools-dev all 20240727.1+nmu1 [60.0 kB] Get:16 http://localhost:3142/debian unstable/main amd64 automake all 1:1.18.1-4 [877 kB] Get:17 http://localhost:3142/debian unstable/main amd64 autopoint all 1.0-3 [820 kB] Get:18 http://localhost:3142/debian unstable/main amd64 binutils-powerpc64le-linux-gnu amd64 2.47-2 [1573 kB] Get:19 http://localhost:3142/debian unstable/main amd64 gcc-16-powerpc64le-linux-gnu-base amd64 16.1.0-3cross1 [37.7 kB] Get:20 http://localhost:3142/debian unstable/main amd64 cpp-16-powerpc64le-linux-gnu amd64 16.1.0-3cross1 [98.3 MB] Get:21 http://localhost:3142/debian unstable/main amd64 cpp-powerpc64le-linux-gnu amd64 4:16.1.0-3 [4480 B] Get:22 http://localhost:3142/debian unstable/main amd64 gcc-16-cross-base all 16.1.0-3cross1 [33.2 kB] Get:23 http://localhost:3142/debian unstable/main amd64 libc6-ppc64el-cross all 2.43-3cross8 [1505 kB] Get:24 http://localhost:3142/debian unstable/main amd64 libgcc-s1-ppc64el-cross all 16.1.0-3cross1 [51.9 kB] Get:25 http://localhost:3142/debian unstable/main amd64 libgomp1-ppc64el-cross all 16.1.0-3cross1 [149 kB] Get:26 http://localhost:3142/debian unstable/main amd64 libitm1-ppc64el-cross all 16.1.0-3cross1 [29.2 kB] Get:27 http://localhost:3142/debian unstable/main amd64 libatomic1-ppc64el-cross all 16.1.0-3cross1 [10.3 kB] Get:28 http://localhost:3142/debian unstable/main amd64 libasan8-ppc64el-cross all 16.1.0-3cross1 [2786 kB] Get:29 http://localhost:3142/debian unstable/main amd64 liblsan0-ppc64el-cross all 16.1.0-3cross1 [1272 kB] Get:30 http://localhost:3142/debian unstable/main amd64 libtsan2-ppc64el-cross all 16.1.0-3cross1 [2504 kB] Get:31 http://localhost:3142/debian unstable/main amd64 libstdc++6-ppc64el-cross all 16.1.0-3cross1 [863 kB] Get:32 http://localhost:3142/debian unstable/main amd64 libubsan1-ppc64el-cross all 16.1.0-3cross1 [1194 kB] Get:33 http://localhost:3142/debian unstable/main amd64 libquadmath0-ppc64el-cross all 16.1.0-3cross1 [157 kB] Get:34 http://localhost:3142/debian unstable/main amd64 libgcc-16-dev-ppc64el-cross all 16.1.0-3cross1 [1472 kB] Get:35 http://localhost:3142/debian unstable/main amd64 gcc-16-powerpc64le-linux-gnu amd64 16.1.0-3cross1 [110 MB] Get:36 http://localhost:3142/debian unstable/main amd64 gcc-powerpc64le-linux-gnu amd64 4:16.1.0-3 [1460 B] Get:37 http://localhost:3142/debian unstable/main amd64 linux-libc-dev-ppc64el-cross all 7.1.12-1 [12.2 kB] Get:38 http://localhost:3142/debian unstable/main amd64 libc6-dev-ppc64el-cross all 2.43-3cross8 [1976 kB] Get:39 http://localhost:3142/debian unstable/main amd64 libstdc++-16-dev-ppc64el-cross all 16.1.0-3cross1 [2801 kB] Get:40 http://localhost:3142/debian unstable/main amd64 g++-16-powerpc64le-linux-gnu amd64 16.1.0-3cross1 [108 MB] Get:41 http://localhost:3142/debian unstable/main amd64 g++-powerpc64le-linux-gnu amd64 4:16.1.0-3 [1208 B] Get:42 http://localhost:3142/debian unstable/main amd64 crossbuild-essential-ppc64el all 12.12 [3560 B] Get:43 http://localhost:3142/debian unstable/main amd64 d-shlibs all 0.109 [11.1 kB] Get:44 http://localhost:3142/debian unstable/main amd64 libdebhelper-perl all 14.3 [77.3 kB] Get:45 http://localhost:3142/debian unstable/main amd64 libtool all 2.6.2-2 [553 kB] Get:46 http://localhost:3142/debian unstable/main amd64 dh-autoreconf all 22 [12.2 kB] Get:47 http://localhost:3142/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:48 http://localhost:3142/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.15.1-1 [17.1 kB] Get:49 http://localhost:3142/debian unstable/main amd64 dh-strip-nondeterminism all 1.15.1-1 [6020 B] Get:50 http://localhost:3142/debian unstable/main amd64 libelf1t64 amd64 0.196-1 [61.2 kB] Get:51 http://localhost:3142/debian unstable/main amd64 dwz amd64 0.17-1 [109 kB] Get:52 http://localhost:3142/debian unstable/main amd64 libunistring5 amd64 1.4.2-1 [480 kB] Get:53 http://localhost:3142/debian unstable/main amd64 libxml2-16 amd64 2.15.3+dfsg-1+b1 [682 kB] Get:54 http://localhost:3142/debian unstable/main amd64 gettext amd64 1.0-3 [2658 kB] Get:55 http://localhost:3142/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get:56 http://localhost:3142/debian unstable/main amd64 po-debconf all 1.0.22 [216 kB] Get:57 http://localhost:3142/debian unstable/main amd64 debhelper all 14.3 [934 kB] Get:58 http://localhost:3142/debian unstable/main amd64 libgpg-error0 amd64 1.61-5 [93.1 kB] Get:59 http://localhost:3142/debian unstable/main amd64 libassuan9 amd64 3.0.2-2+b2 [60.7 kB] Get:60 http://localhost:3142/debian unstable/main amd64 libgcrypt20 amd64 1.12.2-1 [903 kB] Get:61 http://localhost:3142/debian unstable/main amd64 libreadline8t64 amd64 8.3-4 [181 kB] Get:62 http://localhost:3142/debian unstable/main amd64 gpgconf amd64 2.4.9-7+b1 [130 kB] Get:63 http://localhost:3142/debian unstable/main amd64 libidn2-0 amd64 2.3.8-5 [109 kB] Get:64 http://localhost:3142/debian unstable/main amd64 libffi8 amd64 3.8.0-2 [32.5 kB] Get:65 http://localhost:3142/debian unstable/main amd64 libp11-kit0 amd64 0.26.5-1 [482 kB] Get:66 http://localhost:3142/debian unstable/main amd64 libtasn1-6 amd64 4.21.0-2+b1 [49.3 kB] Get:67 http://localhost:3142/debian unstable/main amd64 libgnutls30t64 amd64 3.8.13-1 [1546 kB] Get:68 http://localhost:3142/debian unstable/main amd64 libksba8 amd64 1.8.1-1 [147 kB] Get:69 http://localhost:3142/debian unstable/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-11 [17.2 kB] Get:70 http://localhost:3142/debian unstable/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-11 [55.2 kB] Get:71 http://localhost:3142/debian unstable/main amd64 libldap2 amd64 2.6.14+dfsg-2 [200 kB] Get:72 http://localhost:3142/debian unstable/main amd64 libnpth0t64 amd64 1.8-3+b2 [23.2 kB] Get:73 http://localhost:3142/debian unstable/main amd64 dirmngr amd64 2.4.9-7+b1 [397 kB] Get:74 http://localhost:3142/debian unstable/main ppc64el gcc-16-base ppc64el 16.2.0-1 [38.0 kB] Get:75 http://localhost:3142/debian unstable/main amd64 gnupg-l10n all 2.4.9-7 [748 kB] Get:76 http://localhost:3142/debian unstable/main amd64 libsqlite3-0 amd64 3.53.4-2 [974 kB] Get:77 http://localhost:3142/debian unstable/main amd64 gpg amd64 2.4.9-7+b1 [665 kB] Get:78 http://localhost:3142/debian unstable/main amd64 libncursesw6 amd64 6.6+20260608-2 [137 kB] Get:79 http://localhost:3142/debian unstable/main amd64 pinentry-curses amd64 1.3.3-3 [91.8 kB] Get:80 http://localhost:3142/debian unstable/main amd64 gpg-agent amd64 2.4.9-7+b1 [282 kB] Get:81 http://localhost:3142/debian unstable/main amd64 gpgsm amd64 2.4.9-7+b1 [285 kB] Get:82 http://localhost:3142/debian unstable/main amd64 gnupg all 2.4.9-7 [415 kB] Get:83 http://localhost:3142/debian unstable/main ppc64el libgcc-s1 ppc64el 16.2.0-1 [51.9 kB] Get:84 http://localhost:3142/debian unstable/main ppc64el libc-gconv-modules-extra ppc64el 2.43-4 [1130 kB] Get:85 http://localhost:3142/debian unstable/main ppc64el libc6 ppc64el 2.43-4 [1746 kB] Get:86 http://localhost:3142/debian unstable/main ppc64el libasan8 ppc64el 16.2.0-1 [2794 kB] Get:87 http://localhost:3142/debian unstable/main ppc64el libgpg-error0 ppc64el 1.61-5 [97.9 kB] Get:88 http://localhost:3142/debian unstable/main ppc64el libassuan9 ppc64el 3.0.2-2+b2 [63.5 kB] Get:89 http://localhost:3142/debian unstable/main ppc64el libgpg-error-dev ppc64el 1.61-5 [161 kB] Get:90 http://localhost:3142/debian unstable/main ppc64el libassuan-dev ppc64el 3.0.2-2+b2 [123 kB] Get:91 http://localhost:3142/debian unstable/main ppc64el libatomic1 ppc64el 16.2.0-1 [10.2 kB] Get:92 http://localhost:3142/debian unstable/main ppc64el libgomp1 ppc64el 16.2.0-1 [155 kB] Get:93 http://localhost:3142/debian unstable/main ppc64el libitm1 ppc64el 16.2.0-1 [29.1 kB] Get:94 http://localhost:3142/debian unstable/main ppc64el liblsan0 ppc64el 16.2.0-1 [1273 kB] Get:95 http://localhost:3142/debian unstable/main ppc64el libtsan2 ppc64el 16.2.0-1 [2510 kB] Get:96 http://localhost:3142/debian unstable/main ppc64el libstdc++6 ppc64el 16.2.0-1 [889 kB] Get:97 http://localhost:3142/debian unstable/main ppc64el libubsan1 ppc64el 16.2.0-1 [1195 kB] Get:98 http://localhost:3142/debian unstable/main ppc64el libquadmath0 ppc64el 16.2.0-1 [157 kB] Get:99 http://localhost:3142/debian unstable/main ppc64el libgcc-16-dev ppc64el 16.2.0-1 [1488 kB] Get:100 http://localhost:3142/debian unstable/main ppc64el libc6-dev ppc64el 2.43-4 [1978 kB] Get:101 http://localhost:3142/debian unstable/main ppc64el libstdc++-16-dev ppc64el 16.2.0-1 [2940 kB] Get:102 http://localhost:3142/debian unstable/main ppc64el libboost1.90-dev ppc64el 1.90.0-6.1+b1 [11.3 MB] Get:103 http://localhost:3142/debian unstable/main ppc64el libboost-atomic1.90.0 ppc64el 1.90.0-6.1+b1 [227 kB] Get:104 http://localhost:3142/debian unstable/main ppc64el libboost-atomic1.90-dev ppc64el 1.90.0-6.1+b1 [228 kB] Get:105 http://localhost:3142/debian unstable/main ppc64el libboost-atomic-dev ppc64el 1.90.0.2+nmu1 [3300 B] Get:106 http://localhost:3142/debian unstable/main ppc64el libgmp10 ppc64el 2:6.3.0+dfsg-5+b2 [580 kB] Get:107 http://localhost:3142/debian unstable/main ppc64el libgmpxx4ldbl ppc64el 2:6.3.0+dfsg-5+b2 [328 kB] Get:108 http://localhost:3142/debian unstable/main ppc64el libgmp-dev ppc64el 2:6.3.0+dfsg-5+b2 [667 kB] Get:109 http://localhost:3142/debian unstable/main ppc64el libgpgme45 ppc64el 2.1.2-1 [358 kB] Get:110 http://localhost:3142/debian unstable/main ppc64el libgpgme-dev ppc64el 2.1.2-1 [553 kB] Get:111 http://localhost:3142/debian unstable/main ppc64el libnettle8t64 ppc64el 3.10.2-1+b1 [329 kB] Get:112 http://localhost:3142/debian unstable/main ppc64el libhogweed6t64 ppc64el 3.10.2-1+b1 [338 kB] Get:113 http://localhost:3142/debian unstable/main amd64 libpkgconf7 amd64 2.5.1-4 [47.8 kB] Get:114 http://localhost:3142/debian unstable/main amd64 pkgconf-bin amd64 2.5.1-4 [35.9 kB] Get:115 http://localhost:3142/debian unstable/main ppc64el pkgconf ppc64el 2.5.1-4 [33.6 kB] Get:116 http://localhost:3142/debian unstable/main ppc64el nettle-dev ppc64el 3.10.2-1+b1 [1353 kB] Get:117 http://localhost:3142/debian unstable/main ppc64el libsecrecy-dev ppc64el 0.0.5+ds-5 [21.3 kB] Get:118 http://localhost:3142/debian unstable/main ppc64el zlib1g ppc64el 1:1.3.dfsg+really1.3.2-3 [90.4 kB] Get:119 http://localhost:3142/debian unstable/main ppc64el zlib1g-dev ppc64el 1:1.3.dfsg+really1.3.2-3 [918 kB] Preconfiguring packages ... Fetched 391 MB in 3s (118 MB/s) Selecting previously unselected package readline-common. (Reading database ... 12107 files and directories currently installed.) Preparing to unpack .../000-readline-common_8.3-4_all.deb ... Unpacking readline-common (8.3-4) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../001-sensible-utils_0.0.26_all.deb ... Unpacking sensible-utils (0.0.26) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../002-libmagic-mgc_1%3a5.47-4_amd64.deb ... Unpacking libmagic-mgc (1:5.47-4) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../003-libmagic1t64_1%3a5.47-4_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.47-4) ... Selecting previously unselected package file. Preparing to unpack .../004-file_1%3a5.47-4_amd64.deb ... Unpacking file (1:5.47-4) ... Selecting previously unselected package gettext-base. Preparing to unpack .../005-gettext-base_1.0-3_amd64.deb ... Unpacking gettext-base (1.0-3) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../006-libuchardet0_0.0.8-2+b2_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-2+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../007-groff-base_1.24.1-1_amd64.deb ... Unpacking groff-base (1.24.1-1) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../008-bsdextrautils_2.42.2-4_amd64.deb ... Unpacking bsdextrautils (2.42.2-4) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../009-libpipeline1_1.5.8-3_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.8-3) ... Selecting previously unselected package man-db. Preparing to unpack .../010-man-db_2.13.1-1_amd64.deb ... Unpacking man-db (2.13.1-1) ... Selecting previously unselected package m4. Preparing to unpack .../011-m4_1.4.21-1_amd64.deb ... Unpacking m4 (1.4.21-1) ... Selecting previously unselected package autoconf. Preparing to unpack .../012-autoconf_2.73-2_all.deb ... Unpacking autoconf (2.73-2) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../013-autotools-dev_20240727.1+nmu1_all.deb ... Unpacking autotools-dev (20240727.1+nmu1) ... Selecting previously unselected package automake. Preparing to unpack .../014-automake_1%3a1.18.1-4_all.deb ... Unpacking automake (1:1.18.1-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../015-autopoint_1.0-3_all.deb ... Unpacking autopoint (1.0-3) ... Selecting previously unselected package binutils-powerpc64le-linux-gnu. Preparing to unpack .../016-binutils-powerpc64le-linux-gnu_2.47-2_amd64.deb ... Unpacking binutils-powerpc64le-linux-gnu (2.47-2) ... Selecting previously unselected package gcc-16-powerpc64le-linux-gnu-base:amd64. Preparing to unpack .../017-gcc-16-powerpc64le-linux-gnu-base_16.1.0-3cross1_amd64.deb ... Unpacking gcc-16-powerpc64le-linux-gnu-base:amd64 (16.1.0-3cross1) ... Selecting previously unselected package cpp-16-powerpc64le-linux-gnu. Preparing to unpack .../018-cpp-16-powerpc64le-linux-gnu_16.1.0-3cross1_amd64.deb ... Unpacking cpp-16-powerpc64le-linux-gnu (16.1.0-3cross1) ... Selecting previously unselected package cpp-powerpc64le-linux-gnu. Preparing to unpack .../019-cpp-powerpc64le-linux-gnu_4%3a16.1.0-3_amd64.deb ... Unpacking cpp-powerpc64le-linux-gnu (4:16.1.0-3) ... Selecting previously unselected package gcc-16-cross-base. Preparing to unpack .../020-gcc-16-cross-base_16.1.0-3cross1_all.deb ... Unpacking gcc-16-cross-base (16.1.0-3cross1) ... Selecting previously unselected package libc6-ppc64el-cross. Preparing to unpack .../021-libc6-ppc64el-cross_2.43-3cross8_all.deb ... Unpacking libc6-ppc64el-cross (2.43-3cross8) ... Selecting previously unselected package libgcc-s1-ppc64el-cross. Preparing to unpack .../022-libgcc-s1-ppc64el-cross_16.1.0-3cross1_all.deb ... Unpacking libgcc-s1-ppc64el-cross (16.1.0-3cross1) ... Selecting previously unselected package libgomp1-ppc64el-cross. Preparing to unpack .../023-libgomp1-ppc64el-cross_16.1.0-3cross1_all.deb ... Unpacking libgomp1-ppc64el-cross (16.1.0-3cross1) ... Selecting previously unselected package libitm1-ppc64el-cross. Preparing to unpack .../024-libitm1-ppc64el-cross_16.1.0-3cross1_all.deb ... Unpacking libitm1-ppc64el-cross (16.1.0-3cross1) ... Selecting previously unselected package libatomic1-ppc64el-cross. Preparing to unpack .../025-libatomic1-ppc64el-cross_16.1.0-3cross1_all.deb ... Unpacking libatomic1-ppc64el-cross (16.1.0-3cross1) ... Selecting previously unselected package libasan8-ppc64el-cross. Preparing to unpack .../026-libasan8-ppc64el-cross_16.1.0-3cross1_all.deb ... Unpacking libasan8-ppc64el-cross (16.1.0-3cross1) ... Selecting previously unselected package liblsan0-ppc64el-cross. Preparing to unpack .../027-liblsan0-ppc64el-cross_16.1.0-3cross1_all.deb ... Unpacking liblsan0-ppc64el-cross (16.1.0-3cross1) ... Selecting previously unselected package libtsan2-ppc64el-cross. Preparing to unpack .../028-libtsan2-ppc64el-cross_16.1.0-3cross1_all.deb ... Unpacking libtsan2-ppc64el-cross (16.1.0-3cross1) ... Selecting previously unselected package libstdc++6-ppc64el-cross. Preparing to unpack .../029-libstdc++6-ppc64el-cross_16.1.0-3cross1_all.deb ... Unpacking libstdc++6-ppc64el-cross (16.1.0-3cross1) ... Selecting previously unselected package libubsan1-ppc64el-cross. Preparing to unpack .../030-libubsan1-ppc64el-cross_16.1.0-3cross1_all.deb ... Unpacking libubsan1-ppc64el-cross (16.1.0-3cross1) ... Selecting previously unselected package libquadmath0-ppc64el-cross. Preparing to unpack .../031-libquadmath0-ppc64el-cross_16.1.0-3cross1_all.deb ... Unpacking libquadmath0-ppc64el-cross (16.1.0-3cross1) ... Selecting previously unselected package libgcc-16-dev-ppc64el-cross. Preparing to unpack .../032-libgcc-16-dev-ppc64el-cross_16.1.0-3cross1_all.deb ... Unpacking libgcc-16-dev-ppc64el-cross (16.1.0-3cross1) ... Selecting previously unselected package gcc-16-powerpc64le-linux-gnu. Preparing to unpack .../033-gcc-16-powerpc64le-linux-gnu_16.1.0-3cross1_amd64.deb ... Unpacking gcc-16-powerpc64le-linux-gnu (16.1.0-3cross1) ... Selecting previously unselected package gcc-powerpc64le-linux-gnu. Preparing to unpack .../034-gcc-powerpc64le-linux-gnu_4%3a16.1.0-3_amd64.deb ... Unpacking gcc-powerpc64le-linux-gnu (4:16.1.0-3) ... Selecting previously unselected package linux-libc-dev-ppc64el-cross. Preparing to unpack .../035-linux-libc-dev-ppc64el-cross_7.1.12-1_all.deb ... Unpacking linux-libc-dev-ppc64el-cross (7.1.12-1) ... Selecting previously unselected package libc6-dev-ppc64el-cross. Preparing to unpack .../036-libc6-dev-ppc64el-cross_2.43-3cross8_all.deb ... Unpacking libc6-dev-ppc64el-cross (2.43-3cross8) ... Selecting previously unselected package libstdc++-16-dev-ppc64el-cross. Preparing to unpack .../037-libstdc++-16-dev-ppc64el-cross_16.1.0-3cross1_all.deb ... Unpacking libstdc++-16-dev-ppc64el-cross (16.1.0-3cross1) ... Selecting previously unselected package g++-16-powerpc64le-linux-gnu. Preparing to unpack .../038-g++-16-powerpc64le-linux-gnu_16.1.0-3cross1_amd64.deb ... Unpacking g++-16-powerpc64le-linux-gnu (16.1.0-3cross1) ... Selecting previously unselected package g++-powerpc64le-linux-gnu. Preparing to unpack .../039-g++-powerpc64le-linux-gnu_4%3a16.1.0-3_amd64.deb ... Unpacking g++-powerpc64le-linux-gnu (4:16.1.0-3) ... Selecting previously unselected package crossbuild-essential-ppc64el. Preparing to unpack .../040-crossbuild-essential-ppc64el_12.12_all.deb ... Unpacking crossbuild-essential-ppc64el (12.12) ... Selecting previously unselected package d-shlibs. Preparing to unpack .../041-d-shlibs_0.109_all.deb ... Unpacking d-shlibs (0.109) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../042-libdebhelper-perl_14.3_all.deb ... Unpacking libdebhelper-perl (14.3) ... Selecting previously unselected package libtool. Preparing to unpack .../043-libtool_2.6.2-2_all.deb ... Unpacking libtool (2.6.2-2) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../044-dh-autoreconf_22_all.deb ... Unpacking dh-autoreconf (22) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../045-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../046-libfile-stripnondeterminism-perl_1.15.1-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.15.1-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../047-dh-strip-nondeterminism_1.15.1-1_all.deb ... Unpacking dh-strip-nondeterminism (1.15.1-1) ... Selecting previously unselected package libelf1t64:amd64. Preparing to unpack .../048-libelf1t64_0.196-1_amd64.deb ... Unpacking libelf1t64:amd64 (0.196-1) ... Selecting previously unselected package dwz. Preparing to unpack .../049-dwz_0.17-1_amd64.deb ... Unpacking dwz (0.17-1) ... Selecting previously unselected package libunistring5:amd64. Preparing to unpack .../050-libunistring5_1.4.2-1_amd64.deb ... Unpacking libunistring5:amd64 (1.4.2-1) ... Selecting previously unselected package libxml2-16:amd64. Preparing to unpack .../051-libxml2-16_2.15.3+dfsg-1+b1_amd64.deb ... Unpacking libxml2-16:amd64 (2.15.3+dfsg-1+b1) ... Selecting previously unselected package gettext. Preparing to unpack .../052-gettext_1.0-3_amd64.deb ... Unpacking gettext (1.0-3) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../053-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../054-po-debconf_1.0.22_all.deb ... Unpacking po-debconf (1.0.22) ... Selecting previously unselected package debhelper. Preparing to unpack .../055-debhelper_14.3_all.deb ... Unpacking debhelper (14.3) ... Selecting previously unselected package libgpg-error0:amd64. Preparing to unpack .../056-libgpg-error0_1.61-5_amd64.deb ... Unpacking libgpg-error0:amd64 (1.61-5) ... Selecting previously unselected package libassuan9:amd64. Preparing to unpack .../057-libassuan9_3.0.2-2+b2_amd64.deb ... Unpacking libassuan9:amd64 (3.0.2-2+b2) ... Selecting previously unselected package libgcrypt20:amd64. Preparing to unpack .../058-libgcrypt20_1.12.2-1_amd64.deb ... Unpacking libgcrypt20:amd64 (1.12.2-1) ... Selecting previously unselected package libreadline8t64:amd64. Preparing to unpack .../059-libreadline8t64_8.3-4_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.3-4) ... Selecting previously unselected package gpgconf. Preparing to unpack .../060-gpgconf_2.4.9-7+b1_amd64.deb ... Unpacking gpgconf (2.4.9-7+b1) ... Selecting previously unselected package libidn2-0:amd64. Preparing to unpack .../061-libidn2-0_2.3.8-5_amd64.deb ... Unpacking libidn2-0:amd64 (2.3.8-5) ... Selecting previously unselected package libffi8:amd64. Preparing to unpack .../062-libffi8_3.8.0-2_amd64.deb ... Unpacking libffi8:amd64 (3.8.0-2) ... Selecting previously unselected package libp11-kit0:amd64. Preparing to unpack .../063-libp11-kit0_0.26.5-1_amd64.deb ... Unpacking libp11-kit0:amd64 (0.26.5-1) ... Selecting previously unselected package libtasn1-6:amd64. Preparing to unpack .../064-libtasn1-6_4.21.0-2+b1_amd64.deb ... Unpacking libtasn1-6:amd64 (4.21.0-2+b1) ... Selecting previously unselected package libgnutls30t64:amd64. Preparing to unpack .../065-libgnutls30t64_3.8.13-1_amd64.deb ... Unpacking libgnutls30t64:amd64 (3.8.13-1) ... Selecting previously unselected package libksba8:amd64. Preparing to unpack .../066-libksba8_1.8.1-1_amd64.deb ... Unpacking libksba8:amd64 (1.8.1-1) ... Selecting previously unselected package libsasl2-modules-db:amd64. Preparing to unpack .../067-libsasl2-modules-db_2.1.28+dfsg1-11_amd64.deb ... Unpacking libsasl2-modules-db:amd64 (2.1.28+dfsg1-11) ... Selecting previously unselected package libsasl2-2:amd64. Preparing to unpack .../068-libsasl2-2_2.1.28+dfsg1-11_amd64.deb ... Unpacking libsasl2-2:amd64 (2.1.28+dfsg1-11) ... Selecting previously unselected package libldap2:amd64. Preparing to unpack .../069-libldap2_2.6.14+dfsg-2_amd64.deb ... Unpacking libldap2:amd64 (2.6.14+dfsg-2) ... Selecting previously unselected package libnpth0t64:amd64. Preparing to unpack .../070-libnpth0t64_1.8-3+b2_amd64.deb ... Unpacking libnpth0t64:amd64 (1.8-3+b2) ... Selecting previously unselected package dirmngr. Preparing to unpack .../071-dirmngr_2.4.9-7+b1_amd64.deb ... Unpacking dirmngr (2.4.9-7+b1) ... Selecting previously unselected package gcc-16-base:ppc64el. Preparing to unpack .../072-gcc-16-base_16.2.0-1_ppc64el.deb ... Unpacking gcc-16-base:ppc64el (16.2.0-1) ... Selecting previously unselected package gnupg-l10n. Preparing to unpack .../073-gnupg-l10n_2.4.9-7_all.deb ... Unpacking gnupg-l10n (2.4.9-7) ... Selecting previously unselected package libsqlite3-0:amd64. Preparing to unpack .../074-libsqlite3-0_3.53.4-2_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.53.4-2) ... Selecting previously unselected package gpg. Preparing to unpack .../075-gpg_2.4.9-7+b1_amd64.deb ... Unpacking gpg (2.4.9-7+b1) ... Selecting previously unselected package libncursesw6:amd64. Preparing to unpack .../076-libncursesw6_6.6+20260608-2_amd64.deb ... Unpacking libncursesw6:amd64 (6.6+20260608-2) ... Selecting previously unselected package pinentry-curses. Preparing to unpack .../077-pinentry-curses_1.3.3-3_amd64.deb ... Unpacking pinentry-curses (1.3.3-3) ... Selecting previously unselected package gpg-agent. Preparing to unpack .../078-gpg-agent_2.4.9-7+b1_amd64.deb ... Unpacking gpg-agent (2.4.9-7+b1) ... Selecting previously unselected package gpgsm. Preparing to unpack .../079-gpgsm_2.4.9-7+b1_amd64.deb ... Unpacking gpgsm (2.4.9-7+b1) ... Selecting previously unselected package gnupg. Preparing to unpack .../080-gnupg_2.4.9-7_all.deb ... Unpacking gnupg (2.4.9-7) ... Selecting previously unselected package libgcc-s1:ppc64el. Preparing to unpack .../081-libgcc-s1_16.2.0-1_ppc64el.deb ... Unpacking libgcc-s1:ppc64el (16.2.0-1) ... Selecting previously unselected package libc-gconv-modules-extra:ppc64el. Preparing to unpack .../082-libc-gconv-modules-extra_2.43-4_ppc64el.deb ... Unpacking libc-gconv-modules-extra:ppc64el (2.43-4) ... Selecting previously unselected package libc6:ppc64el. Preparing to unpack .../083-libc6_2.43-4_ppc64el.deb ... Unpacking libc6:ppc64el (2.43-4) ... Selecting previously unselected package libasan8:ppc64el. Preparing to unpack .../084-libasan8_16.2.0-1_ppc64el.deb ... Unpacking libasan8:ppc64el (16.2.0-1) ... Selecting previously unselected package libgpg-error0:ppc64el. Preparing to unpack .../085-libgpg-error0_1.61-5_ppc64el.deb ... Unpacking libgpg-error0:ppc64el (1.61-5) ... Selecting previously unselected package libassuan9:ppc64el. Preparing to unpack .../086-libassuan9_3.0.2-2+b2_ppc64el.deb ... Unpacking libassuan9:ppc64el (3.0.2-2+b2) ... Selecting previously unselected package libgpg-error-dev:ppc64el. Preparing to unpack .../087-libgpg-error-dev_1.61-5_ppc64el.deb ... Unpacking libgpg-error-dev:ppc64el (1.61-5) ... Selecting previously unselected package libassuan-dev:ppc64el. Preparing to unpack .../088-libassuan-dev_3.0.2-2+b2_ppc64el.deb ... Unpacking libassuan-dev:ppc64el (3.0.2-2+b2) ... Selecting previously unselected package libatomic1:ppc64el. Preparing to unpack .../089-libatomic1_16.2.0-1_ppc64el.deb ... Unpacking libatomic1:ppc64el (16.2.0-1) ... Selecting previously unselected package libgomp1:ppc64el. Preparing to unpack .../090-libgomp1_16.2.0-1_ppc64el.deb ... Unpacking libgomp1:ppc64el (16.2.0-1) ... Selecting previously unselected package libitm1:ppc64el. Preparing to unpack .../091-libitm1_16.2.0-1_ppc64el.deb ... Unpacking libitm1:ppc64el (16.2.0-1) ... Selecting previously unselected package liblsan0:ppc64el. Preparing to unpack .../092-liblsan0_16.2.0-1_ppc64el.deb ... Unpacking liblsan0:ppc64el (16.2.0-1) ... Selecting previously unselected package libtsan2:ppc64el. Preparing to unpack .../093-libtsan2_16.2.0-1_ppc64el.deb ... Unpacking libtsan2:ppc64el (16.2.0-1) ... Selecting previously unselected package libstdc++6:ppc64el. Preparing to unpack .../094-libstdc++6_16.2.0-1_ppc64el.deb ... Unpacking libstdc++6:ppc64el (16.2.0-1) ... Selecting previously unselected package libubsan1:ppc64el. Preparing to unpack .../095-libubsan1_16.2.0-1_ppc64el.deb ... Unpacking libubsan1:ppc64el (16.2.0-1) ... Selecting previously unselected package libquadmath0:ppc64el. Preparing to unpack .../096-libquadmath0_16.2.0-1_ppc64el.deb ... Unpacking libquadmath0:ppc64el (16.2.0-1) ... Selecting previously unselected package libgcc-16-dev:ppc64el. Preparing to unpack .../097-libgcc-16-dev_16.2.0-1_ppc64el.deb ... Unpacking libgcc-16-dev:ppc64el (16.2.0-1) ... Selecting previously unselected package libc6-dev:ppc64el. Preparing to unpack .../098-libc6-dev_2.43-4_ppc64el.deb ... Unpacking libc6-dev:ppc64el (2.43-4) ... Selecting previously unselected package libstdc++-16-dev:ppc64el. Preparing to unpack .../099-libstdc++-16-dev_16.2.0-1_ppc64el.deb ... Unpacking libstdc++-16-dev:ppc64el (16.2.0-1) ... Selecting previously unselected package libboost1.90-dev:ppc64el. Preparing to unpack .../100-libboost1.90-dev_1.90.0-6.1+b1_ppc64el.deb ... Unpacking libboost1.90-dev:ppc64el (1.90.0-6.1+b1) ... Selecting previously unselected package libboost-atomic1.90.0:ppc64el. Preparing to unpack .../101-libboost-atomic1.90.0_1.90.0-6.1+b1_ppc64el.deb ... Unpacking libboost-atomic1.90.0:ppc64el (1.90.0-6.1+b1) ... Selecting previously unselected package libboost-atomic1.90-dev:ppc64el. Preparing to unpack .../102-libboost-atomic1.90-dev_1.90.0-6.1+b1_ppc64el.deb ... Unpacking libboost-atomic1.90-dev:ppc64el (1.90.0-6.1+b1) ... Selecting previously unselected package libboost-atomic-dev:ppc64el. Preparing to unpack .../103-libboost-atomic-dev_1.90.0.2+nmu1_ppc64el.deb ... Unpacking libboost-atomic-dev:ppc64el (1.90.0.2+nmu1) ... Selecting previously unselected package libgmp10:ppc64el. Preparing to unpack .../104-libgmp10_2%3a6.3.0+dfsg-5+b2_ppc64el.deb ... Unpacking libgmp10:ppc64el (2:6.3.0+dfsg-5+b2) ... Selecting previously unselected package libgmpxx4ldbl:ppc64el. Preparing to unpack .../105-libgmpxx4ldbl_2%3a6.3.0+dfsg-5+b2_ppc64el.deb ... Unpacking libgmpxx4ldbl:ppc64el (2:6.3.0+dfsg-5+b2) ... Selecting previously unselected package libgmp-dev:ppc64el. Preparing to unpack .../106-libgmp-dev_2%3a6.3.0+dfsg-5+b2_ppc64el.deb ... Unpacking libgmp-dev:ppc64el (2:6.3.0+dfsg-5+b2) ... Selecting previously unselected package libgpgme45:ppc64el. Preparing to unpack .../107-libgpgme45_2.1.2-1_ppc64el.deb ... Unpacking libgpgme45:ppc64el (2.1.2-1) ... Selecting previously unselected package libgpgme-dev:ppc64el. Preparing to unpack .../108-libgpgme-dev_2.1.2-1_ppc64el.deb ... Unpacking libgpgme-dev:ppc64el (2.1.2-1) ... Selecting previously unselected package libnettle8t64:ppc64el. Preparing to unpack .../109-libnettle8t64_3.10.2-1+b1_ppc64el.deb ... Unpacking libnettle8t64:ppc64el (3.10.2-1+b1) ... Selecting previously unselected package libhogweed6t64:ppc64el. Preparing to unpack .../110-libhogweed6t64_3.10.2-1+b1_ppc64el.deb ... Unpacking libhogweed6t64:ppc64el (3.10.2-1+b1) ... Selecting previously unselected package libpkgconf7:amd64. Preparing to unpack .../111-libpkgconf7_2.5.1-4_amd64.deb ... Unpacking libpkgconf7:amd64 (2.5.1-4) ... Selecting previously unselected package pkgconf-bin. Preparing to unpack .../112-pkgconf-bin_2.5.1-4_amd64.deb ... Unpacking pkgconf-bin (2.5.1-4) ... Selecting previously unselected package pkgconf:ppc64el. Preparing to unpack .../113-pkgconf_2.5.1-4_ppc64el.deb ... Unpacking pkgconf:ppc64el (2.5.1-4) ... Selecting previously unselected package nettle-dev:ppc64el. Preparing to unpack .../114-nettle-dev_3.10.2-1+b1_ppc64el.deb ... Unpacking nettle-dev:ppc64el (3.10.2-1+b1) ... Selecting previously unselected package libsecrecy-dev:ppc64el. Preparing to unpack .../115-libsecrecy-dev_0.0.5+ds-5_ppc64el.deb ... Unpacking libsecrecy-dev:ppc64el (0.0.5+ds-5) ... Selecting previously unselected package zlib1g:ppc64el. Preparing to unpack .../116-zlib1g_1%3a1.3.dfsg+really1.3.2-3_ppc64el.deb ... Unpacking zlib1g:ppc64el (1:1.3.dfsg+really1.3.2-3) ... Selecting previously unselected package zlib1g-dev:ppc64el. Preparing to unpack .../117-zlib1g-dev_1%3a1.3.dfsg+really1.3.2-3_ppc64el.deb ... Unpacking zlib1g-dev:ppc64el (1:1.3.dfsg+really1.3.2-3) ... Selecting previously unselected package sbuild-build-depends-main-dummy:ppc64el. Preparing to unpack .../118-sbuild-build-depends-main-dummy_0.invalid.0_ppc64el.deb ... Unpacking sbuild-build-depends-main-dummy:ppc64el (0.invalid.0) ... Setting up libc-gconv-modules-extra:ppc64el (2.43-4) ... Setting up libpipeline1:amd64 (1.5.8-3) ... Setting up libnpth0t64:amd64 (1.8-3+b2) ... Setting up bsdextrautils (2.42.2-4) ... Setting up libgpg-error0:amd64 (1.61-5) ... Setting up libmagic-mgc (1:5.47-4) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libxml2-16:amd64 (2.15.3+dfsg-1+b1) ... Setting up libc6-ppc64el-cross (2.43-3cross8) ... Setting up libdebhelper-perl (14.3) ... Setting up libsqlite3-0:amd64 (3.53.4-2) ... Setting up libpkgconf7:amd64 (2.5.1-4) ... Setting up libmagic1t64:amd64 (1:5.47-4) ... Setting up gcc-16-powerpc64le-linux-gnu-base:amd64 (16.1.0-3cross1) ... Setting up gettext-base (1.0-3) ... Setting up m4 (1.4.21-1) ... Setting up libgcrypt20:amd64 (1.12.2-1) ... Setting up gcc-16-base:ppc64el (16.2.0-1) ... Setting up file (1:5.47-4) ... Setting up gcc-16-cross-base (16.1.0-3cross1) ... Setting up libelf1t64:amd64 (0.196-1) ... Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg1-11) ... Setting up cpp-16-powerpc64le-linux-gnu (16.1.0-3cross1) ... Setting up autotools-dev (20240727.1+nmu1) ... Setting up gnupg-l10n (2.4.9-7) ... Setting up libunistring5:amd64 (1.4.2-1) ... Setting up autopoint (1.0-3) ... Setting up d-shlibs (0.109) ... Setting up pkgconf-bin (2.5.1-4) ... Setting up libncursesw6:amd64 (6.6+20260608-2) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg1-11) ... Setting up autoconf (2.73-2) ... Setting up libitm1-ppc64el-cross (16.1.0-3cross1) ... Setting up libffi8:amd64 (3.8.0-2) ... Setting up libatomic1-ppc64el-cross (16.1.0-3cross1) ... Setting up dwz (0.17-1) ... Setting up sensible-utils (0.0.26) ... Setting up libuchardet0:amd64 (0.0.8-2+b2) ... Setting up linux-libc-dev-ppc64el-cross (7.1.12-1) ... Setting up libassuan9:amd64 (3.0.2-2+b2) ... Setting up libtasn1-6:amd64 (4.21.0-2+b1) ... Setting up libgcc-s1-ppc64el-cross (16.1.0-3cross1) ... Setting up binutils-powerpc64le-linux-gnu (2.47-2) ... Setting up readline-common (8.3-4) ... Setting up libldap2:amd64 (2.6.14+dfsg-2) ... Setting up cpp-powerpc64le-linux-gnu (4:16.1.0-3) ... Setting up automake (1:1.18.1-4) ... update-alternatives: using /usr/bin/automake-1.18 to provide /usr/bin/automake (automake) in auto mode Setting up libksba8:amd64 (1.8.1-1) ... Setting up pinentry-curses (1.3.3-3) ... Setting up libfile-stripnondeterminism-perl (1.15.1-1) ... Setting up gettext (1.0-3) ... Setting up libc6-dev-ppc64el-cross (2.43-3cross8) ... Setting up libtool (2.6.2-2) ... Setting up libquadmath0-ppc64el-cross (16.1.0-3cross1) ... Setting up libasan8-ppc64el-cross (16.1.0-3cross1) ... Setting up libidn2-0:amd64 (2.3.8-5) ... Setting up libgomp1-ppc64el-cross (16.1.0-3cross1) ... Setting up liblsan0-ppc64el-cross (16.1.0-3cross1) ... Setting up pkgconf:ppc64el (2.5.1-4) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up libtsan2-ppc64el-cross (16.1.0-3cross1) ... Setting up dh-autoreconf (22) ... Setting up libp11-kit0:amd64 (0.26.5-1) ... Setting up libstdc++6-ppc64el-cross (16.1.0-3cross1) ... Setting up libreadline8t64:amd64 (8.3-4) ... Setting up dh-strip-nondeterminism (1.15.1-1) ... Setting up groff-base (1.24.1-1) ... Setting up gpgconf (2.4.9-7+b1) ... Setting up gpg (2.4.9-7+b1) ... Setting up libgnutls30t64:amd64 (3.8.13-1) ... Setting up gpg-agent (2.4.9-7+b1) ... Setting up libubsan1-ppc64el-cross (16.1.0-3cross1) ... Setting up po-debconf (1.0.22) ... Setting up gpgsm (2.4.9-7+b1) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up dirmngr (2.4.9-7+b1) ... Setting up gnupg (2.4.9-7) ... Setting up libgcc-16-dev-ppc64el-cross (16.1.0-3cross1) ... Setting up debhelper (14.3) ... Setting up gcc-16-powerpc64le-linux-gnu (16.1.0-3cross1) ... Setting up libstdc++-16-dev-ppc64el-cross (16.1.0-3cross1) ... Setting up g++-16-powerpc64le-linux-gnu (16.1.0-3cross1) ... Setting up gcc-powerpc64le-linux-gnu (4:16.1.0-3) ... Setting up g++-powerpc64le-linux-gnu (4:16.1.0-3) ... Setting up crossbuild-essential-ppc64el (12.12) ... Setting up libgcc-s1:ppc64el (16.2.0-1) ... Setting up libc6:ppc64el (2.43-4) ... Setting up libasan8:ppc64el (16.2.0-1) ... Setting up libc6-dev:ppc64el (2.43-4) ... Setting up libtsan2:ppc64el (16.2.0-1) ... Setting up libstdc++6:ppc64el (16.2.0-1) ... Setting up liblsan0:ppc64el (16.2.0-1) ... Setting up libitm1:ppc64el (16.2.0-1) ... Setting up libgpg-error0:ppc64el (1.61-5) ... Setting up zlib1g:ppc64el (1:1.3.dfsg+really1.3.2-3) ... Setting up libgomp1:ppc64el (16.2.0-1) ... Setting up libnettle8t64:ppc64el (3.10.2-1+b1) ... Setting up libgpg-error-dev:ppc64el (1.61-5) ... Setting up libgmp10:ppc64el (2:6.3.0+dfsg-5+b2) ... Setting up libquadmath0:ppc64el (16.2.0-1) ... Setting up libatomic1:ppc64el (16.2.0-1) ... Setting up libubsan1:ppc64el (16.2.0-1) ... Setting up zlib1g-dev:ppc64el (1:1.3.dfsg+really1.3.2-3) ... Setting up libhogweed6t64:ppc64el (3.10.2-1+b1) ... Setting up libassuan9:ppc64el (3.0.2-2+b2) ... Setting up libboost-atomic1.90.0:ppc64el (1.90.0-6.1+b1) ... Setting up libgpgme45:ppc64el (2.1.2-1) ... Setting up libgcc-16-dev:ppc64el (16.2.0-1) ... Setting up libgmpxx4ldbl:ppc64el (2:6.3.0+dfsg-5+b2) ... Setting up libstdc++-16-dev:ppc64el (16.2.0-1) ... Setting up libassuan-dev:ppc64el (3.0.2-2+b2) ... Setting up libgpgme-dev:ppc64el (2.1.2-1) ... Setting up libboost1.90-dev:ppc64el (1.90.0-6.1+b1) ... Setting up libboost-atomic1.90-dev:ppc64el (1.90.0-6.1+b1) ... Setting up libgmp-dev:ppc64el (2:6.3.0+dfsg-5+b2) ... Setting up nettle-dev:ppc64el (3.10.2-1+b1) ... Setting up libboost-atomic-dev:ppc64el (1.90.0.2+nmu1) ... Setting up libsecrecy-dev:ppc64el (0.0.5+ds-5) ... Setting up sbuild-build-depends-main-dummy:ppc64el (0.invalid.0) ... Processing triggers for libc-bin (2.43-4) ... +------------------------------------------------------------------------------+ | Check architectures Wed, 02 Sep 2026 15:43:16 +0000 | +------------------------------------------------------------------------------+ Arch check ok (ppc64el included in any) +------------------------------------------------------------------------------+ | Build environment Wed, 02 Sep 2026 15:43:17 +0000 | +------------------------------------------------------------------------------+ Kernel: Linux 6.12.107+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.107-1 (2026-08-29) amd64 (x86_64) Toolchain package versions: binutils_2.47-2 dpkg-dev_1.23.7 g++-16_16.2.0-1 gcc-16_16.2.0-1 libc6-dev_2.43-4 libstdc++-16-dev_16.2.0-1 libstdc++-16-dev-ppc64el-cross_16.1.0-3cross1 libstdc++6_16.2.0-1 libstdc++6-ppc64el-cross_16.1.0-3cross1 linux-libc-dev_7.1.12-1 Package versions: apt_3.3.3 apt-utils_3.3.3 autoconf_2.73-2 automake_1:1.18.1-4 autopoint_1.0-3 autotools-dev_20240727.1+nmu1 base-files_14.2 base-passwd_3.6.8 bash_5.3-3+b1 binutils_2.47-2 binutils-common_2.47-2 binutils-powerpc64le-linux-gnu_2.47-2 binutils-x86-64-linux-gnu_2.47-2 bsdextrautils_2.42.2-4 build-essential_12.12 bzip2_1.0.8-6+b2 coreutils_9.10-1 cpp_4:16.1.0-3 cpp-16_16.2.0-1 cpp-16-powerpc64le-linux-gnu_16.1.0-3cross1 cpp-16-x86-64-linux-gnu_16.2.0-1 cpp-powerpc64le-linux-gnu_4:16.1.0-3 cpp-x86-64-linux-gnu_4:16.1.0-3 crossbuild-essential-ppc64el_12.12 d-shlibs_0.109 dash_0.5.12-12 debconf_1.5.92 debhelper_14.3 debian-archive-keyring_2025.1 debianutils_5.24 dh-autoreconf_22 dh-strip-nondeterminism_1.15.1-1 diffutils_1:3.12-1 dirmngr_2.4.9-7+b1 dpkg_1.23.7 dpkg-dev_1.23.7 dwz_0.17-1 file_1:5.47-4 findutils_4.11.0-2 g++_4:16.1.0-3 g++-16_16.2.0-1 g++-16-powerpc64le-linux-gnu_16.1.0-3cross1 g++-16-x86-64-linux-gnu_16.2.0-1 g++-powerpc64le-linux-gnu_4:16.1.0-3 g++-x86-64-linux-gnu_4:16.1.0-3 gcc_4:16.1.0-3 gcc-16_16.2.0-1 gcc-16-base_16.2.0-1 gcc-16-cross-base_16.1.0-3cross1 gcc-16-powerpc64le-linux-gnu_16.1.0-3cross1 gcc-16-powerpc64le-linux-gnu-base_16.1.0-3cross1 gcc-16-x86-64-linux-gnu_16.2.0-1 gcc-powerpc64le-linux-gnu_4:16.1.0-3 gcc-x86-64-linux-gnu_4:16.1.0-3 gettext_1.0-3 gettext-base_1.0-3 gnupg_2.4.9-7 gnupg-l10n_2.4.9-7 gpg_2.4.9-7+b1 gpg-agent_2.4.9-7+b1 gpgconf_2.4.9-7+b1 gpgsm_2.4.9-7+b1 grep_3.12-1 groff-base_1.24.1-1 gzip_1.14-1 hostname_3.25 init-system-helpers_1.69+nmu1 intltool-debian_0.35.0+20060710.6 libacl1_2.4.0-1 libapt-pkg7.0_3.3.3 libarchive-zip-perl_1.68-1 libasan8_16.2.0-1 libasan8-ppc64el-cross_16.1.0-3cross1 libassuan-dev_3.0.2-2+b2 libassuan9_3.0.2-2+b2 libatomic1_16.2.0-1 libatomic1-ppc64el-cross_16.1.0-3cross1 libattr1_1:2.6.0-1 libaudit-common_1:4.1.2-1 libaudit1_1:4.1.2-1+b1 libbinutils_2.47-2 libblkid1_2.42.2-4 libboost-atomic-dev_1.90.0.2+nmu1 libboost-atomic1.90-dev_1.90.0-6.1+b1 libboost-atomic1.90.0_1.90.0-6.1+b1 libboost1.90-dev_1.90.0-6.1+b1 libbz2-1.0_1.0.8-6+b2 libc-bin_2.43-4 libc-dev-bin_2.43-4 libc-gconv-modules-extra_2.43-4 libc6_2.43-4 libc6-dev_2.43-4 libc6-dev-ppc64el-cross_2.43-3cross8 libc6-ppc64el-cross_2.43-3cross8 libcap-ng0_0.9.5-1 libcc1-0_16.2.0-1 libcrypt1_1:4.5.2+20251210-1 libctf-nobfd0_2.47-2 libctf0_2.47-2 libdb5.3t64_5.3.28+dfsg2-11+b1 libdebconfclient0_0.283 libdebhelper-perl_14.3 libdpkg-perl_1.23.7 libelf1t64_0.196-1 libffi8_3.8.0-2 libfile-stripnondeterminism-perl_1.15.1-1 libgcc-16-dev_16.2.0-1 libgcc-16-dev-ppc64el-cross_16.1.0-3cross1 libgcc-s1_16.2.0-1 libgcc-s1-ppc64el-cross_16.1.0-3cross1 libgcrypt20_1.12.2-1 libgdbm-compat4t64_1.26-1+b2 libgdbm6t64_1.26-1+b2 libgmp-dev_2:6.3.0+dfsg-5+b2 libgmp10_2:6.3.0+dfsg-5+b2 libgmpxx4ldbl_2:6.3.0+dfsg-5+b2 libgnutls30t64_3.8.13-1 libgomp1_16.2.0-1 libgomp1-ppc64el-cross_16.1.0-3cross1 libgpg-error-dev_1.61-5 libgpg-error0_1.61-5 libgpgme-dev_2.1.2-1 libgpgme45_2.1.2-1 libgprofng0_2.47-2 libhogweed6t64_3.10.2-1+b1 libhwasan0_16.2.0-1 libidn2-0_2.3.8-5 libisl23_0.28-1 libitm1_16.2.0-1 libitm1-ppc64el-cross_16.1.0-3cross1 libjansson4_2.15.1-1 libksba8_1.8.1-1 libldap2_2.6.14+dfsg-2 liblsan0_16.2.0-1 liblsan0-ppc64el-cross_16.1.0-3cross1 liblz4-1_1.10.0-10 liblzma5_5.8.3-1 libmagic-mgc_1:5.47-4 libmagic1t64_1:5.47-4 libmd0_1.2.0-2 libmount1_2.42.2-4 libmpc3_1.3.1-3 libmpfr6_4.2.2-3 libncursesw6_6.6+20260608-2 libnettle8t64_3.10.2-1+b1 libnpth0t64_1.8-3+b2 libp11-kit0_0.26.5-1 libpam-modules_1.7.0-8 libpam-modules-bin_1.7.0-8 libpam-runtime_1.7.0-8 libpam0g_1.7.0-8 libpcre2-8-0_10.48-2 libperl5.42_5.42.3-1 libpipeline1_1.5.8-3 libpkgconf7_2.5.1-4 libquadmath0_16.2.0-1 libquadmath0-ppc64el-cross_16.1.0-3cross1 libreadline8t64_8.3-4 libsasl2-2_2.1.28+dfsg1-11 libsasl2-modules-db_2.1.28+dfsg1-11 libseccomp2_2.6.1-1 libsecrecy-dev_0.0.5+ds-5 libselinux1_3.11-2 libsframe3_2.47-2 libsmartcols1_2.42.2-4 libsqlite3-0_3.53.4-2 libssl3t64_3.6.4-1 libstdc++-16-dev_16.2.0-1 libstdc++-16-dev-ppc64el-cross_16.1.0-3cross1 libstdc++6_16.2.0-1 libstdc++6-ppc64el-cross_16.1.0-3cross1 libsystemd0_262~rc1-2 libtasn1-6_4.21.0-2+b1 libtinfo6_6.6+20260608-2 libtool_2.6.2-2 libtsan2_16.2.0-1 libtsan2-ppc64el-cross_16.1.0-3cross1 libubsan1_16.2.0-1 libubsan1-ppc64el-cross_16.1.0-3cross1 libuchardet0_0.0.8-2+b2 libudev1_262~rc1-2 libunistring5_1.4.2-1 libuuid1_2.42.2-4 libxml2-16_2.15.3+dfsg-1+b1 libxxhash0_0.8.3-2+b2 libzstd1_1.5.7+dfsg-4 linux-libc-dev_7.1.12-1 linux-libc-dev-ppc64el-cross_7.1.12-1 login_1:4.16.0-2+really2.42.2-4 login.defs_1:4.19.3-2 m4_1.4.21-1 make_4.4.1-3 man-db_2.13.1-1 mawk_1.3.4.20260302-1 ncurses-base_6.6+20260608-2 ncurses-bin_6.6+20260608-2 nettle-dev_3.10.2-1+b1 openssl-provider-legacy_3.6.4-1 patch_2.8-2 perl_5.42.3-1 perl-base_5.42.3-1 perl-modules-5.42_5.42.3-1 pinentry-curses_1.3.3-3 pkgconf_2.5.1-4 pkgconf-bin_2.5.1-4 po-debconf_1.0.22 readline-common_8.3-4 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-3 sensible-utils_0.0.26 sqv_1.4.0-1 sysvinit-utils_3.18-1 tar_1.35+dfsg-5 util-linux_2.42.2-4 xz-utils_5.8.3-1 zlib1g_1:1.3.dfsg+really1.3.2-3 zlib1g-dev_1:1.3.dfsg+really1.3.2-3 +------------------------------------------------------------------------------+ | Build Wed, 02 Sep 2026 15:43:17 +0000 | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: libmaus2 Binary: libmaus2-2, libmaus2-dev Architecture: any Version: 2.0.813+ds-6 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , Steffen Moeller , Étienne Mollier Homepage: https://gitlab.com/german.tischler/libmaus2 Standards-Version: 4.7.4 Vcs-Browser: https://salsa.debian.org/med-team/libmaus2 Vcs-Git: https://salsa.debian.org/med-team/libmaus2.git Build-Depends: debhelper-compat (= 14), d-shlibs, libboost-atomic-dev, libsecrecy-dev, pkgconf, zlib1g-dev Package-List: libmaus2-2 deb libs optional arch=any libmaus2-dev deb libdevel optional arch=any Checksums-Sha1: 4ad42d0c76fc0e3cc06d9067049dd5acfd986984 1655972 libmaus2_2.0.813+ds.orig.tar.xz bdbdb6aff13e41a83105800ad3d3d126a98015a0 10260 libmaus2_2.0.813+ds-6.debian.tar.xz Checksums-Sha256: 8ad66707ad0881638e67f51ba5b2182fd0ad194601025f319c87af77d933b7c9 1655972 libmaus2_2.0.813+ds.orig.tar.xz fe6a03965722fb86ebf12b39b888a17e22bd47400644273833f56d0e1a0fad70 10260 libmaus2_2.0.813+ds-6.debian.tar.xz Files: fd8774f8aa644f77bfdca25fe33348e1 1655972 libmaus2_2.0.813+ds.orig.tar.xz 8bc079315adcddd3ad6c0ca13292ad29 10260 libmaus2_2.0.813+ds-6.debian.tar.xz Dgit: c1fe707985fbeeae20dc119c0f10d5859b640823 debian archive/debian/2.0.813+ds-6 https://git.dgit.debian.org/libmaus2 -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmpzoqQUHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdrPuQ//TrZ/sTYoK9aDwdN1iazLehlrKDOt 3PZ8a7CtM3Nt4rHp3//pOwo8jicrf14pjFivOgltZpQXCdSjNVu8KaxS84qT0Qko dNC0kPrQ7+ddHtg5/v7l4l/Ea9fHkUl4FOmIKHk+fGmvvbR/iUxrpq36iUY3ePiv wNKQKjf/KIKzv87QCFJUHXHn3BBQb+oTZybb3m1vIk2d3it55Np9fQbB78BvTS0f SrA83vqIoIN3cNzYwadzsf3mqba1hI5e5wcNYZt5ifFHED/7LF/japPovykHNEpe XVXxlkI5UtMH/5xDgFSwcrxLfLo28qA26gbe/RBdTYzDU/QEPDJuIhBwfIeQQ+R9 wd1Pc0aAcF9yb/osPmwAGsjYIQrojzNxQyQqpPHKN/K0c9HiaJzj0txJJxjnfMXZ kcZijga3NrTppO8aCxLtX+mGa+c2jHA0T7Il9igU6tcrBem3Rmd93kFc5NF8ew0i L+MzXWvMfHR63ynQ9StnZAL2GeEfXxtiQC8kbOzvJICWputNjXZ1HDi/sxPOrfiO l9QruR88311210dBa4ZoWfJrigB80iVOFJfy2B8r7/YS02pQYMSTLJKPih/RmyT9 CFcxg49B2pJ2QYSHVa8TeU+v0S6CVgcfEaObkqGj9lLjf2qJ7LeCLrVkHRbCYNWv DWBCoHhFmXM8jbQ= =66m6 -----END PGP SIGNATURE----- dpkg-source: warning: cannot verify inline signature for ./libmaus2_2.0.813+ds-6.dsc: missing OpenPGP keyrings dpkg-source: info: verifying ./libmaus2_2.0.813+ds-6.dsc dpkg-source: info: skipping absent keyring /usr/share/keyrings/debian-keyring.pgp dpkg-source: info: skipping absent keyring /usr/share/keyrings/debian-tag2upload.pgp dpkg-source: info: skipping absent keyring /usr/share/keyrings/debian-nonupload.pgp dpkg-source: info: skipping absent keyring /usr/share/keyrings/debian-maintainers.pgp dpkg-source: info: extracting libmaus2 in /build/reproducible-path/libmaus2-2.0.813+ds dpkg-source: info: unpacking libmaus2_2.0.813+ds.orig.tar.xz dpkg-source: info: unpacking libmaus2_2.0.813+ds-6.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying add-support-for-loong64.patch dpkg-source: info: applying gcc-15.patch dpkg-source: info: applying unlock-stdc++.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.ppc64el DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LOGNAME=sbuild OLDPWD=/home/crossqa PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SBUILD_CONFIG=/tmp/tmp.gkOcjSzGOO/sbuild.conf SHELL=/bin/sh USER=sbuild XDG_SESSION_CLASS=user dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -appc64el -Pcross,nocheck -us -uc -B --jobs-try=1 dpkg-buildpackage: info: source package libmaus2 dpkg-buildpackage: info: source version 2.0.813+ds-6 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-architecture: warning: specified GNU system type powerpc64le-linux-gnu does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture ppc64el debian/rules clean dh clean dh_clean debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a autoreconf: export WARNINGS= autoreconf: Entering directory '.' autoreconf: configure.ac: no obvious need to run autopoint autoreconf: running: aclocal --force -I m4 autoreconf: configure.ac: tracing autoreconf: running: libtoolize --copy --force libtoolize: putting auxiliary files in '.'. libtoolize: copying file './ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'. libtoolize: copying file 'm4/libtool.m4' libtoolize: copying file 'm4/ltoptions.m4' libtoolize: copying file 'm4/ltsugar.m4' libtoolize: copying file 'm4/ltversion.m4' libtoolize: copying file 'm4/lt~obsolete.m4' autoreconf: configure.ac: not using Intltool autoreconf: configure.ac: not using Gtkdoc autoreconf: configure.ac: no need to run autopoint (confirmed) autoreconf: running: aclocal --force -I m4 autoreconf: running: /usr/bin/autoconf --force configure.ac:4: warning: The macro 'AC_CANONICAL_SYSTEM' is obsolete. configure.ac:4: You should run autoupdate. ./lib/autoconf/general.m4:2137: AC_CANONICAL_SYSTEM is expanded from... configure.ac:4: the top level configure.ac:6: warning: The macro 'AC_PROG_LIBTOOL' is obsolete. configure.ac:6: You should run autoupdate. m4/libtool.m4:100: AC_PROG_LIBTOOL is expanded from... configure.ac:6: the top level configure.ac:9: warning: 'AM_CONFIG_HEADER': this macro is obsolete. configure.ac:9: You should use the 'AC_CONFIG_HEADERS' macro instead. aclocal.m4:1059: AM_CONFIG_HEADER is expanded from... configure.ac:9: the top level configure.ac:77: warning: The macro 'AC_TRY_LINK' is obsolete. configure.ac:77: You should run autoupdate. ./lib/autoconf/general.m4:2976: AC_TRY_LINK is expanded from... configure.ac:77: the top level configure.ac:153: warning: The macro 'AC_TRY_LINK' is obsolete. configure.ac:153: You should run autoupdate. ./lib/autoconf/general.m4:2976: AC_TRY_LINK is expanded from... configure.ac:153: the top level configure.ac:211: warning: The macro 'AC_TRY_LINK' is obsolete. configure.ac:211: You should run autoupdate. ./lib/autoconf/general.m4:2976: AC_TRY_LINK is expanded from... configure.ac:211: the top level configure.ac:247: warning: The macro 'AC_TRY_LINK' is obsolete. configure.ac:247: You should run autoupdate. ./lib/autoconf/general.m4:2976: AC_TRY_LINK is expanded from... configure.ac:247: the top level configure.ac:276: warning: The macro 'AC_TRY_LINK' is obsolete. configure.ac:276: You should run autoupdate. ./lib/autoconf/general.m4:2976: AC_TRY_LINK is expanded from... configure.ac:276: the top level configure.ac:331: warning: The macro 'AC_TRY_LINK' is obsolete. configure.ac:331: You should run autoupdate. ./lib/autoconf/general.m4:2976: AC_TRY_LINK is expanded from... configure.ac:331: the top level configure.ac:386: warning: The macro 'AC_TRY_LINK' is obsolete. configure.ac:386: You should run autoupdate. ./lib/autoconf/general.m4:2976: AC_TRY_LINK is expanded from... configure.ac:386: the top level configure.ac:565: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:565: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:565: the top level configure.ac:577: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:577: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:577: the top level configure.ac:589: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:589: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:589: the top level configure.ac:601: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:601: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:601: the top level configure.ac:613: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:613: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:613: the top level configure.ac:627: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:627: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:627: the top level configure.ac:641: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:641: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:641: the top level configure.ac:655: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:655: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:655: the top level configure.ac:669: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:669: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:669: the top level configure.ac:683: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:683: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:683: the top level configure.ac:696: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:696: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:696: the top level configure.ac:713: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:713: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:713: the top level configure.ac:727: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:727: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:727: the top level configure.ac:743: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:743: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:743: the top level configure.ac:759: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:759: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:759: the top level configure.ac:773: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:773: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:773: the top level configure.ac:786: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:786: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:786: the top level configure.ac:800: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:800: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:800: the top level configure.ac:813: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:813: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:813: the top level configure.ac:829: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:829: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:829: the top level configure.ac:842: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:842: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:842: the top level configure.ac:856: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:856: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:856: the top level configure.ac:870: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:870: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:870: the top level configure.ac:884: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:884: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:884: the top level configure.ac:900: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:900: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:900: the top level configure.ac:941: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:941: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:941: the top level configure.ac:958: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:958: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:958: the top level configure.ac:977: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:977: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:977: the top level configure.ac:992: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:992: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:992: the top level configure.ac:1009: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:1009: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:1009: the top level configure.ac:1027: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:1027: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:1027: the top level configure.ac:1045: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:1045: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:1045: the top level configure.ac:1062: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:1062: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:1062: the top level configure.ac:1079: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:1079: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:1079: the top level configure.ac:1096: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:1096: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:1096: the top level configure.ac:1113: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:1113: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:1113: the top level configure.ac:1146: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:1146: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:1146: the top level configure.ac:1163: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:1163: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:1163: the top level configure.ac:1180: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:1180: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:1180: the top level configure.ac:1213: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:1213: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:1213: the top level configure.ac:1231: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:1231: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:1231: the top level configure.ac:1249: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:1249: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:1249: the top level configure.ac:1269: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:1269: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:1269: the top level configure.ac:1289: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:1289: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:1289: the top level configure.ac:1309: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:1309: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:1309: the top level configure.ac:1329: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:1329: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:1329: the top level configure.ac:1349: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:1349: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:1349: the top level configure.ac:1369: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:1369: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:1369: the top level configure.ac:1389: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:1389: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:1389: the top level configure.ac:1426: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:1426: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:1426: the top level configure.ac:1446: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:1446: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:1446: the top level configure.ac:1466: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:1466: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:1466: the top level configure.ac:1486: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:1486: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:1486: the top level configure.ac:1525: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:1525: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:1525: the top level configure.ac:1545: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:1545: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:1545: the top level configure.ac:1566: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:1566: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:1566: the top level configure.ac:1586: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:1586: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:1586: the top level configure.ac:1601: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:1601: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:1601: the top level configure.ac:1677: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:1677: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:1677: the top level configure.ac:1686: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:1686: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:1686: the top level configure.ac:1702: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:1702: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:1702: the top level configure.ac:1718: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:1718: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:1718: the top level configure.ac:1731: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:1731: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:1731: the top level configure.ac:1746: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:1746: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:1746: the top level configure.ac:1760: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:1760: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:1760: the top level configure.ac:1774: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:1774: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:1774: the top level configure.ac:1787: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:1787: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:1787: the top level configure.ac:1806: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:1806: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:1806: the top level configure.ac:1887: warning: The macro 'AC_TRY_LINK' is obsolete. configure.ac:1887: You should run autoupdate. ./lib/autoconf/general.m4:2976: AC_TRY_LINK is expanded from... lib/m4sugar/m4sh.m4:689: _AS_IF_ELSE is expanded from... lib/m4sugar/m4sh.m4:696: AS_IF is expanded from... ./lib/autoconf/general.m4:2305: AC_CACHE_VAL is expanded from... ./lib/autoconf/general.m4:2326: AC_CACHE_CHECK is expanded from... m4/ax_openmp.m4:68: AX_OPENMP is expanded from... configure.ac:1887: the top level configure.ac:1897: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:1897: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:1897: the top level configure.ac:1913: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:1913: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:1913: the top level configure.ac:1933: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:1933: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:1933: the top level configure.ac:2315: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:2315: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:2315: the top level configure.ac:2354: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:2354: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:2354: the top level configure.ac:2711: warning: The macro 'AC_TRY_LINK' is obsolete. configure.ac:2711: You should run autoupdate. ./lib/autoconf/general.m4:2976: AC_TRY_LINK is expanded from... configure.ac:2711: the top level configure.ac:2779: warning: The macro 'AC_TRY_LINK' is obsolete. configure.ac:2779: You should run autoupdate. ./lib/autoconf/general.m4:2976: AC_TRY_LINK is expanded from... configure.ac:2779: the top level configure.ac:2808: warning: The macro 'AC_TRY_LINK' is obsolete. configure.ac:2808: You should run autoupdate. ./lib/autoconf/general.m4:2976: AC_TRY_LINK is expanded from... configure.ac:2808: the top level configure.ac:2824: warning: The macro 'AC_TRY_LINK' is obsolete. configure.ac:2824: You should run autoupdate. ./lib/autoconf/general.m4:2976: AC_TRY_LINK is expanded from... configure.ac:2824: the top level configure.ac:2990: warning: The macro 'AC_TRY_LINK' is obsolete. configure.ac:2990: You should run autoupdate. ./lib/autoconf/general.m4:2976: AC_TRY_LINK is expanded from... configure.ac:2990: the top level configure.ac:3215: warning: AC_OUTPUT should be used without arguments. configure.ac:3215: You should run autoupdate. autoreconf: running: /usr/bin/autoheader --force autoreconf: running: automake --add-missing --copy --force-missing configure.ac:6: installing './compile' configure.ac:4: installing './config.guess' configure.ac:4: installing './config.sub' configure.ac:8: installing './install-sh' configure.ac:8: installing './missing' Makefile.am: installing './INSTALL' src/Makefile.am: installing './depcomp' parallel-tests: installing './test-driver' autoreconf: configure.ac: not running make: --make not given autoreconf: Leaving directory '.' dh_auto_configure -a ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/powerpc64le-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --host=powerpc64le-linux-gnu configure: Configuring for source in directory . checking build system type... x86_64-pc-linux-gnu checking host system type... powerpc64le-unknown-linux-gnu checking target system type... powerpc64le-unknown-linux-gnu checking how to print strings... printf checking for powerpc64le-linux-gnu-gcc... powerpc64le-linux-gnu-gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... yes checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether powerpc64le-linux-gnu-gcc accepts -g... yes checking for powerpc64le-linux-gnu-gcc option to enable C23 features... none needed checking whether powerpc64le-linux-gnu-gcc understands -c and -o together... yes checking for a sed that does not truncate output... /usr/bin/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking for ld used by powerpc64le-linux-gnu-gcc... /usr/powerpc64le-linux-gnu/bin/ld checking if the linker (/usr/powerpc64le-linux-gnu/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/powerpc64le-linux-gnu-nm -B checking the name lister (/usr/bin/powerpc64le-linux-gnu-nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-pc-linux-gnu file names to powerpc64le-unknown-linux-gnu format... func_convert_file_noop checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/powerpc64le-linux-gnu/bin/ld option to reload object files... -r checking for file... file checking for powerpc64le-linux-gnu-objdump... powerpc64le-linux-gnu-objdump checking how to recognize dependent libraries... pass_all checking for powerpc64le-linux-gnu-dlltool... no checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for powerpc64le-linux-gnu-ranlib... powerpc64le-linux-gnu-ranlib checking for powerpc64le-linux-gnu-ar... powerpc64le-linux-gnu-ar checking for archiver @FILE support... @ checking for powerpc64le-linux-gnu-strip... powerpc64le-linux-gnu-strip checking for gawk... no checking for mawk... mawk checking command to parse /usr/bin/powerpc64le-linux-gnu-nm -B output from powerpc64le-linux-gnu-gcc object... ok checking for sysroot... no checking for a working dd... /usr/bin/dd checking how to truncate binary pipes... /usr/bin/dd bs=4096 count=1 checking for powerpc64le-linux-gnu-mt... no checking for mt... no checking if : is a manifest tool... no checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking which variant of shared library versioning to provide... (default) aix checking for objdir... .libs checking if powerpc64le-linux-gnu-gcc supports -fno-rtti -fno-exceptions... no checking for powerpc64le-linux-gnu-gcc option to produce PIC... -fPIC -DPIC checking if powerpc64le-linux-gnu-gcc PIC flag -fPIC -DPIC works... yes checking if powerpc64le-linux-gnu-gcc static flag -static works... yes checking if powerpc64le-linux-gnu-gcc supports -c -o file.o... yes checking if powerpc64le-linux-gnu-gcc supports -c -o file.o... (cached) yes checking whether the powerpc64le-linux-gnu-gcc linker (/usr/powerpc64le-linux-gnu/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for a BSD-compatible install... /usr/bin/install -c checking whether sleep supports fractional seconds... yes checking filesystem timestamp resolution... 0.01 checking whether build environment is sane... yes checking for powerpc64le-linux-gnu-strip... (cached) powerpc64le-linux-gnu-strip checking for a race-free mkdir -p... /usr/bin/mkdir -p checking whether make sets $(MAKE)... yes checking whether make supports the include directive... yes (GNU style) checking whether make supports nested variables... yes checking xargs -n works... yes checking how to create a pax tar archive... gnutar checking dependency style of powerpc64le-linux-gnu-gcc... none checking whether we are cross compiling... yes checking for bash... /usr/bin/bash checking for base64... /usr/bin/base64 checking for powerpc64le-linux-gnu-gcc... (cached) powerpc64le-linux-gnu-gcc checking whether the compiler supports GNU C... (cached) yes checking whether powerpc64le-linux-gnu-gcc accepts -g... (cached) yes checking for powerpc64le-linux-gnu-gcc option to enable C23 features... (cached) none needed checking whether powerpc64le-linux-gnu-gcc understands -c and -o together... (cached) yes checking whether the compiler supports GNU C++... yes checking whether powerpc64le-linux-gnu-g++ accepts -g... yes checking how to run the C++ preprocessor... powerpc64le-linux-gnu-g++ -E checking for ld used by powerpc64le-linux-gnu-g++... /usr/powerpc64le-linux-gnu/bin/ld checking if the linker (/usr/powerpc64le-linux-gnu/bin/ld) is GNU ld... yes checking whether the powerpc64le-linux-gnu-g++ linker (/usr/powerpc64le-linux-gnu/bin/ld) supports shared libraries... yes checking for powerpc64le-linux-gnu-g++ option to produce PIC... -fPIC -DPIC checking if powerpc64le-linux-gnu-g++ PIC flag -fPIC -DPIC works... yes checking if powerpc64le-linux-gnu-g++ static flag -static works... yes checking if powerpc64le-linux-gnu-g++ supports -c -o file.o... yes checking if powerpc64le-linux-gnu-g++ supports -c -o file.o... (cached) yes checking whether the powerpc64le-linux-gnu-g++ linker (/usr/powerpc64le-linux-gnu/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking dependency style of powerpc64le-linux-gnu-g++... none checking whether host cpu is x86_64... no checking whether host os is GNU/Linux... yes checking whether we are compiling for x86_64 CPU on GNU/Linux OS ... no checking size of unsigned long... 8 checking for winsock2.h... no checking for ws2tcpip.h... no checking for sys/wait.h... yes checking for sys/ioctl.h... yes checking for execinfo.h... yes checking for windows.h... no checking for unistd.h... (cached) yes checking for linux/sysctl.h... yes checking for features.h... yes checking for dlfcn.h... (cached) yes checking for sys/prctl.h... yes checking for libunwind.h... no checking for unw_backtrace in -lunwind... no checking for powerpc64le-linux-gnu-pkg-config... /usr/bin/powerpc64le-linux-gnu-pkg-config checking pkg-config is at least version 0.9.0... yes checking for zlib >= 0... yes checking for libcurl >= 7.47.0... no checking for parasail-1 >= 2.4.3... no checking for zlib >= 0... yes checking whether we can compile a zlib program... yes checking for snappy.h... no checking for libdeflate.h... no checking for GetProcessMemoryInfo... no checking for dlopen... yes checking for dlerror... yes checking for dlsym... yes checking for dlclose... yes checking for dlopen in -ldl... yes checking for dlerror in -ldl... yes checking for dlsym in -ldl... yes checking for dlclose in -ldl... yes checking whether we found the dlopen function anywhere... yes checking whether we found the dlerror function anywhere... yes checking whether we found the dlsym function anywhere... yes checking whether we found the dlclose function anywhere... yes checking whether we found all the functions required for dynamic modules somewhere... yes checking whether we need the dl library for any of the dl functions... no checking for backtrace... yes checking for gethostname... yes checking for fsync... yes checking for dup2... yes checking for execv... yes checking for mkstemp... yes checking for fcntl... yes checking for pipe... yes checking for fork... yes checking for symlink... yes checking for waitpid... yes checking for gethostbyname... yes checking for gethostbyname2... yes checking for prctl... yes checking whether SIGPIPE exists... yes checking whether SIGHUP exists... yes checking whether pid_t exists... yes checking whether getpid exists... yes checking whether O_RDONLY... yes checking whether O_WRONLY... yes checking whether O_RDWR... yes checking whether O_CREAT... yes checking whether O_TRUNC... yes checking whether OFF_T... yes checking whether lseek function exists... yes checking whether read function exists... yes checking whether fstat function exists... yes checking whether stat function exists... yes checking whether fstatfs function exists... yes checking whether sysconf function exists... yes checking whether write function exists... yes checking whether WIFEXITED exists... yes checking whether WEXITSTATUS exists... yes checking whether the C++ compiler supports the -msse4 flag... no checking whether the C++ compiler supports the -msse2 flag... no checking whether the C++ compiler supports the -mssse3 flag... no checking whether the C++ compiler supports the -msse4.1 flag... no checking whether the C++ compiler supports the -mavx flag... no checking whether the C++ compiler supports the -mavx2 flag... no checking for smmintrin.h... no checking for immintrin.h... no checking whether the C++ compiler supports all intrinsics required for SIMD global alignment (X128/8 variant)... no checking whether the C++ compiler supports all intrinsics required for SIMD global alignment (X128/16 variant)... no checking whether the C++ compiler supports all intrinsics required for SIMD global alignment (Y256/8 variant)... no checking whether the C++ compiler supports all intrinsics required for SIMD global alignment (Y256/16 variant)... no checking whether the C++ compiler supports all intrinsics required for one to many global alignment using AVX2... no checking whether the C++ compiler supports the -msse4 flag... no checking for open with 2 arguments... yes checking for open with 3 arguments... yes checking for close... yes checking for O_NONBLOCK... yes checking for O_LARGEFILE... yes checking for O_BINARY... no checking for ssize_t... yes checking for socklen_t... yes checking whether the C++ compiler supports the -W flag... yes checking whether the C++ compiler supports the -Wall flag... yes checking whether the C++ compiler supports the -Wnon-virtual-dtor flag... yes checking for OpenMP flag of C++ compiler... -fopenmp checking whether the C++ compiler supports the -rdynamic flag... yes checking whether std::unique_ptr exists... yes checking whether std::shared_ptr exists... yes checking whether std::unordered_map exists... yes checking whether std::unordered_set exists... yes checking whether std::move exists... yes checking whether std::filesystem exists... yes checking whether byte ordering is bigendian... no checking for psapi.h... no checking for fcntl.h... yes checking for libgen.h... yes checking for sys/stat.h... (cached) yes checking for sys/types.h... (cached) yes checking for sys/vfs.h... yes checking for boost/smart_ptr/atomic_shared_ptr.hpp... yes checking whether std::atomic< std::shared_ptr<> > is supported... yes checking whether boost::atomic_shared_ptr< > is supported... yes configure: Using atomic from std libray checking whether we can compile a program using statfs... yes checking whether struct statfs has field f_iosize... no checking whether struct statfs has field f_bsize... yes checking whether the C++ compiler supports the -pthread flag... yes checking whether getpagesize is present... yes checking for unsigned __int128... yes checking whether we can compile a program using the gmp library... yes checking for libsecrecy >= 0.0.0... yes checking whether we can compile a libsecrecy program... yes checking for powerpc64le-linux-gnu-gcc option to support large files... none needed checking for declarations of fseeko and ftello... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating libmaus2.pc config.status: creating ubuntu.sh config.status: creating src/libmaus2/LibMausConfig.hpp config.status: creating test/Makefile config.status: creating config.h config.status: executing libtool commands config.status: executing depfiles commands dh_auto_build -a make -j1 make[1]: Entering directory '/build/reproducible-path/libmaus2-2.0.813+ds' make all-recursive make[2]: Entering directory '/build/reproducible-path/libmaus2-2.0.813+ds' Making all in src make[3]: Entering directory '/build/reproducible-path/libmaus2-2.0.813+ds/src' powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testThreadPool-testThreadPool.o `test -f 'test/testThreadPool.cpp' || echo './'`test/testThreadPool.cpp /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/la-StaticInitialization.lo `test -f 'libmaus2/StaticInitialization.cpp' || echo './'`libmaus2/StaticInitialization.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/StaticInitialization.cpp -fPIC -DPIC -o libmaus2/.libs/la-StaticInitialization.o In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/util/IntervalTree.hpp:25, from ./libmaus2/aio/FileFragment.hpp:27, from ./libmaus2/sorting/PairFileSorting.hpp:27, from libmaus2/StaticInitialization.cpp:499: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/bambam/CigarStringParser.hpp:25, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from ./libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from libmaus2/StaticInitialization.cpp:560: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ In file included from ./libmaus2/bambam/BamAlignmentDecoder.hpp:24: ./libmaus2/bambam/BamHeaderLowMem.hpp: In member function ‘void libmaus2::bambam::BamHeaderLowMem::setupFromText()’: ./libmaus2/bambam/BamHeaderLowMem.hpp:366:58: warning: variable ‘ln’ set but not used [-Wunused-but-set-variable=] 366 | uint64_t ln = 0; | ^~ libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/StaticInitialization.cpp -o libmaus2/la-StaticInitialization.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/bitio/la-CompactArray.lo `test -f 'libmaus2/bitio/CompactArray.cpp' || echo './'`libmaus2/bitio/CompactArray.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bitio/CompactArray.cpp -fPIC -DPIC -o libmaus2/bitio/.libs/la-CompactArray.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bitio/CompactArray.cpp -o libmaus2/bitio/la-CompactArray.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/rank/la-RankTable.lo `test -f 'libmaus2/rank/RankTable.cpp' || echo './'`libmaus2/rank/RankTable.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/rank/RankTable.cpp -fPIC -DPIC -o libmaus2/rank/.libs/la-RankTable.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/rank/RankTable.cpp -o libmaus2/rank/la-RankTable.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/rank/la-log2table.lo `test -f 'libmaus2/rank/log2table.cpp' || echo './'`libmaus2/rank/log2table.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/rank/log2table.cpp -fPIC -DPIC -o libmaus2/rank/.libs/la-log2table.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/rank/log2table.cpp -o libmaus2/rank/la-log2table.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/fastx/la-isFastQ.lo `test -f 'libmaus2/fastx/isFastQ.cpp' || echo './'`libmaus2/fastx/isFastQ.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/fastx/isFastQ.cpp -fPIC -DPIC -o libmaus2/fastx/.libs/la-isFastQ.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/fastx/isFastQ.cpp -o libmaus2/fastx/la-isFastQ.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/wavelet/la-toWaveletTreeBits.lo `test -f 'libmaus2/wavelet/toWaveletTreeBits.cpp' || echo './'`libmaus2/wavelet/toWaveletTreeBits.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/wavelet/toWaveletTreeBits.cpp -fPIC -DPIC -o libmaus2/wavelet/.libs/la-toWaveletTreeBits.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/wavelet/toWaveletTreeBits.cpp -o libmaus2/wavelet/la-toWaveletTreeBits.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/suffixsort/la-divsufsort.lo `test -f 'libmaus2/suffixsort/divsufsort.cpp' || echo './'`libmaus2/suffixsort/divsufsort.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/divsufsort.cpp -fPIC -DPIC -o libmaus2/suffixsort/.libs/la-divsufsort.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/divsufsort.cpp -o libmaus2/suffixsort/la-divsufsort.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/digest/la-md5.lo `test -f 'libmaus2/digest/md5.cpp' || echo './'`libmaus2/digest/md5.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/digest/md5.cpp -fPIC -DPIC -o libmaus2/digest/.libs/la-md5.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/digest/md5.cpp -o libmaus2/digest/la-md5.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/math/la-primes16.lo `test -f 'libmaus2/math/primes16.cpp' || echo './'`libmaus2/math/primes16.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/math/primes16.cpp -fPIC -DPIC -o libmaus2/math/.libs/la-primes16.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/math/primes16.cpp -o libmaus2/math/la-primes16.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/util/la-OutputFileNameTools.lo `test -f 'libmaus2/util/OutputFileNameTools.cpp' || echo './'`libmaus2/util/OutputFileNameTools.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/util/OutputFileNameTools.cpp -fPIC -DPIC -o libmaus2/util/.libs/la-OutputFileNameTools.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/util/OutputFileNameTools.cpp -o libmaus2/util/la-OutputFileNameTools.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/select/la-ESelectBase.lo `test -f 'libmaus2/select/ESelectBase.cpp' || echo './'`libmaus2/select/ESelectBase.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/select/ESelectBase.cpp -fPIC -DPIC -o libmaus2/select/.libs/la-ESelectBase.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/select/ESelectBase.cpp -o libmaus2/select/la-ESelectBase.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/bambam/la-CigarStringParser.lo `test -f 'libmaus2/bambam/CigarStringParser.cpp' || echo './'`libmaus2/bambam/CigarStringParser.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/CigarStringParser.cpp -fPIC -DPIC -o libmaus2/bambam/.libs/la-CigarStringParser.o In file included from ./libmaus2/bambam/CigarStringParser.hpp:25, from libmaus2/bambam/CigarStringParser.cpp:20: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/CigarStringParser.cpp -o libmaus2/bambam/la-CigarStringParser.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/fastx/la-Phred.lo `test -f 'libmaus2/fastx/Phred.cpp' || echo './'`libmaus2/fastx/Phred.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/fastx/Phred.cpp -fPIC -DPIC -o libmaus2/fastx/.libs/la-Phred.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/fastx/Phred.cpp -o libmaus2/fastx/la-Phred.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/lz/la-SnappyCompress.lo `test -f 'libmaus2/lz/SnappyCompress.cpp' || echo './'`libmaus2/lz/SnappyCompress.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lz/SnappyCompress.cpp -fPIC -DPIC -o libmaus2/lz/.libs/la-SnappyCompress.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lz/SnappyCompress.cpp -o libmaus2/lz/la-SnappyCompress.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/bambam/la-ReadEndsContainer.lo `test -f 'libmaus2/bambam/ReadEndsContainer.cpp' || echo './'`libmaus2/bambam/ReadEndsContainer.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/ReadEndsContainer.cpp -fPIC -DPIC -o libmaus2/bambam/.libs/la-ReadEndsContainer.o In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/bambam/BamAuxFilterVector.hpp:22, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:27, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/ReadEndsContainer.hpp:23, from libmaus2/bambam/ReadEndsContainer.cpp:19: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/bambam/CigarStringParser.hpp:25, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ In file included from ./libmaus2/bambam/ReadEndsBlockDecoderBase.hpp:31, from ./libmaus2/bambam/ReadEndsContainer.hpp:34: ./libmaus2/index/ExternalMemoryIndexDecoder.hpp: In instantiation of ‘void libmaus2::index::ExternalMemoryIndexDecoder<_data_type, _base_level_log, _inner_level_log, _comparator>::setup(uint64_t) [with _data_type = libmaus2::bambam::ReadEndsBase; unsigned int _base_level_log = 9; unsigned int _inner_level_log = 2; _comparator = std::less; uint64_t = long unsigned int]’: ./libmaus2/index/ExternalMemoryIndexDecoder.hpp:189:5: required from ‘libmaus2::index::ExternalMemoryIndexDecoder<_data_type, _base_level_log, _inner_level_log, _comparator>::ExternalMemoryIndexDecoder(std::istream&, uint64_t) [with _data_type = libmaus2::bambam::ReadEndsBase; unsigned int _base_level_log = 9; unsigned int _inner_level_log = 2; _comparator = std::less; std::istream = std::basic_istream; uint64_t = long unsigned int]’ 189 | setup(rcache_thres); | ^~~~~ ./libmaus2/bambam/ReadEndsBlockDecoderBase.hpp:76:6: required from ‘libmaus2::index::ExternalMemoryIndexDecoder::unique_ptr_type libmaus2::bambam::ReadEndsBlockDecoderBase<_proxy>::openIndex() [with bool _proxy = true; libmaus2::index::ExternalMemoryIndexDecoder::unique_ptr_type = std::unique_ptr, std::default_delete > >]’ 76 | new libmaus2::index::ExternalMemoryIndexDecoder(index) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/bambam/ReadEndsBlockDecoderBase.hpp:140:15: required from ‘libmaus2::bambam::ReadEndsBlockDecoderBase<_proxy>::ReadEndsBlockDecoderBase(libmaus2::bambam::ReadEndsBlockDecoderBaseCollectionInfoDataStreamProvider&, libmaus2::bambam::ReadEndsBlockDecoderBaseCollectionInfoIndexStreamProvider&, std::istream&, std::istream&, uint64_t, uint64_t) [with bool _proxy = true; std::istream = std::basic_istream; uint64_t = long unsigned int]’ 140 | Pindex(openIndex()), | ^~~~~~~~~ ./libmaus2/bambam/ReadEndsBlockDecoderBaseCollection.hpp:140:8: required from ‘libmaus2::bambam::ReadEndsBlockDecoderBaseCollection<_proxy>::ReadEndsBlockDecoderBaseCollection(const std::vector&, bool, uint64_t) [with bool _proxy = true; uint64_t = long unsigned int]’ 140 | new libmaus2::bambam::ReadEndsBlockDecoderBase( | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 | subinfo, | ~~~~~~~~ 142 | subinfo, | ~~~~~~~~ 143 | *(subinfo.datastr), | ~~~~~~~~~~~~~~~~~~~ 144 | *(subinfo.indexstr), | ~~~~~~~~~~~~~~~~~~~~ 145 | subinfo.indexoffset.at(i), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 | subinfo.blockelcnt.at(i) | ~~~~~~~~~~~~~~~~~~~~~~~~ 147 | ) | ~ ./libmaus2/bambam/ReadEndsContainer.hpp:590:6: required from here 590 | ) | ^ ./libmaus2/index/ExternalMemoryIndexDecoder.hpp:99:46: warning: variable ‘numcache’ set but not used [-Wunused-but-set-variable=] 99 | unsigned int numcache = 0; | ^~~~~~~~ libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/ReadEndsContainer.cpp -o libmaus2/bambam/la-ReadEndsContainer.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/bambam/la-ReadEnds.lo `test -f 'libmaus2/bambam/ReadEnds.cpp' || echo './'`libmaus2/bambam/ReadEnds.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/ReadEnds.cpp -fPIC -DPIC -o libmaus2/bambam/.libs/la-ReadEnds.o In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/bambam/BamAuxFilterVector.hpp:22, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:27, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/ReadEndsBase.hpp:22, from ./libmaus2/bambam/ReadEnds.hpp:22, from libmaus2/bambam/ReadEnds.cpp:19: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/bambam/CigarStringParser.hpp:25, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/ReadEnds.cpp -o libmaus2/bambam/la-ReadEnds.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/huffman/la-IndexLoaderBase.lo `test -f 'libmaus2/huffman/IndexLoaderBase.cpp' || echo './'`libmaus2/huffman/IndexLoaderBase.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/huffman/IndexLoaderBase.cpp -fPIC -DPIC -o libmaus2/huffman/.libs/la-IndexLoaderBase.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/huffman/IndexLoaderBase.cpp -o libmaus2/huffman/la-IndexLoaderBase.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/bambam/la-BamAlignmentDecoderBase.lo `test -f 'libmaus2/bambam/BamAlignmentDecoderBase.cpp' || echo './'`libmaus2/bambam/BamAlignmentDecoderBase.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/BamAlignmentDecoderBase.cpp -fPIC -DPIC -o libmaus2/bambam/.libs/la-BamAlignmentDecoderBase.o In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/bambam/BamAuxFilterVector.hpp:22, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:27, from libmaus2/bambam/BamAlignmentDecoderBase.cpp:19: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/bambam/CigarStringParser.hpp:25, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/BamAlignmentDecoderBase.cpp -o libmaus2/bambam/la-BamAlignmentDecoderBase.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/bambam/la-StrCmpNum.lo `test -f 'libmaus2/bambam/StrCmpNum.cpp' || echo './'`libmaus2/bambam/StrCmpNum.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/StrCmpNum.cpp -fPIC -DPIC -o libmaus2/bambam/.libs/la-StrCmpNum.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/StrCmpNum.cpp -o libmaus2/bambam/la-StrCmpNum.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/huffman/la-KvInitResult.lo `test -f 'libmaus2/huffman/KvInitResult.cpp' || echo './'`libmaus2/huffman/KvInitResult.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/huffman/KvInitResult.cpp -fPIC -DPIC -o libmaus2/huffman/.libs/la-KvInitResult.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/huffman/KvInitResult.cpp -o libmaus2/huffman/la-KvInitResult.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/fm/la-MausFmToBwaConversion.lo `test -f 'libmaus2/fm/MausFmToBwaConversion.cpp' || echo './'`libmaus2/fm/MausFmToBwaConversion.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/fm/MausFmToBwaConversion.cpp -fPIC -DPIC -o libmaus2/fm/.libs/la-MausFmToBwaConversion.o In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/util/IntervalTree.hpp:25, from ./libmaus2/gamma/GammaRLDecoder.hpp:28, from libmaus2/fm/MausFmToBwaConversion.cpp:24: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/huffman/huffman.hpp:183, from ./libmaus2/huffman/CanonicalEncoder.hpp:26, from ./libmaus2/gamma/GammaRLDecoder.hpp:26: ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 2]’: ./libmaus2/huffman/HuffmanSorting.hpp:860:55: required from here 860 | huffman::EncodeTable enctable ( root ); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:188: ./libmaus2/huffman/HuffmanSorting.hpp: In instantiation of ‘static void libmaus2::huffman::HuffmanSorting::uncompressHuffmanCoded(uint64_t*, uint64_t, uint64_t, uint64_t, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::HuffmanTreeNode*, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::EncodeTable&) [with unsigned int lookupwords = 2; uint64_t = long unsigned int]’: ./libmaus2/huffman/HuffmanSorting.hpp:1091:27: required from here 1091 | uncompressHuffmanCoded(acode.get(), 0 /* bit offset */, lowhalf /* syms */, firsthighsym, enctable,dectable,root.get(),dectable0,dectable1,enctable0,enctable1); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/huffman/HuffmanSorting.hpp:534:42: warning: variable ‘alldecoffset’ set but not used [-Wunused-but-set-variable=] 534 | uint64_t alldecoffset = highdecoffset; | ^~~~~~~~~~~~ ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 1]’: ./libmaus2/huffman/CanonicalEncoder.hpp:219:116: required from here 219 | return ::libmaus2::huffman::EncodeTable<1>::unique_ptr_type(new ::libmaus2::huffman::EncodeTable<1>(Ptree.get())); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/fm/MausFmToBwaConversion.cpp -o libmaus2/fm/la-MausFmToBwaConversion.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/util/la-TempFileNameGenerator.lo `test -f 'libmaus2/util/TempFileNameGenerator.cpp' || echo './'`libmaus2/util/TempFileNameGenerator.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/util/TempFileNameGenerator.cpp -fPIC -DPIC -o libmaus2/util/.libs/la-TempFileNameGenerator.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/util/TempFileNameGenerator.cpp -o libmaus2/util/la-TempFileNameGenerator.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/util/la-TempFileNameGeneratorState.lo `test -f 'libmaus2/util/TempFileNameGeneratorState.cpp' || echo './'`libmaus2/util/TempFileNameGeneratorState.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/util/TempFileNameGeneratorState.cpp -fPIC -DPIC -o libmaus2/util/.libs/la-TempFileNameGeneratorState.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/util/TempFileNameGeneratorState.cpp -o libmaus2/util/la-TempFileNameGeneratorState.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/util/la-ArgInfo.lo `test -f 'libmaus2/util/ArgInfo.cpp' || echo './'`libmaus2/util/ArgInfo.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/util/ArgInfo.cpp -fPIC -DPIC -o libmaus2/util/.libs/la-ArgInfo.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/util/ArgInfo.cpp -o libmaus2/util/la-ArgInfo.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/util/la-BitList.lo `test -f 'libmaus2/util/BitList.cpp' || echo './'`libmaus2/util/BitList.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/util/BitList.cpp -fPIC -DPIC -o libmaus2/util/.libs/la-BitList.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/util/BitList.cpp -o libmaus2/util/la-BitList.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/util/la-VarBitList.lo `test -f 'libmaus2/util/VarBitList.cpp' || echo './'`libmaus2/util/VarBitList.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/util/VarBitList.cpp -fPIC -DPIC -o libmaus2/util/.libs/la-VarBitList.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/util/VarBitList.cpp -o libmaus2/util/la-VarBitList.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/util/la-Concat.lo `test -f 'libmaus2/util/Concat.cpp' || echo './'`libmaus2/util/Concat.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/util/Concat.cpp -fPIC -DPIC -o libmaus2/util/.libs/la-Concat.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/util/Concat.cpp -o libmaus2/util/la-Concat.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/util/la-ConcatRequest.lo `test -f 'libmaus2/util/ConcatRequest.cpp' || echo './'`libmaus2/util/ConcatRequest.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/util/ConcatRequest.cpp -fPIC -DPIC -o libmaus2/util/.libs/la-ConcatRequest.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/util/ConcatRequest.cpp -o libmaus2/util/la-ConcatRequest.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/util/la-ConsoleColor.lo `test -f 'libmaus2/util/ConsoleColor.cpp' || echo './'`libmaus2/util/ConsoleColor.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/util/ConsoleColor.cpp -fPIC -DPIC -o libmaus2/util/.libs/la-ConsoleColor.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/util/ConsoleColor.cpp -o libmaus2/util/la-ConsoleColor.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/util/la-DynamicLoading.lo `test -f 'libmaus2/util/DynamicLoading.cpp' || echo './'`libmaus2/util/DynamicLoading.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/util/DynamicLoading.cpp -fPIC -DPIC -o libmaus2/util/.libs/la-DynamicLoading.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/util/DynamicLoading.cpp -o libmaus2/util/la-DynamicLoading.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/util/la-GetFileSize.lo `test -f 'libmaus2/util/GetFileSize.cpp' || echo './'`libmaus2/util/GetFileSize.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/util/GetFileSize.cpp -fPIC -DPIC -o libmaus2/util/.libs/la-GetFileSize.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/util/GetFileSize.cpp -o libmaus2/util/la-GetFileSize.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/util/la-Histogram.lo `test -f 'libmaus2/util/Histogram.cpp' || echo './'`libmaus2/util/Histogram.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/util/Histogram.cpp -fPIC -DPIC -o libmaus2/util/.libs/la-Histogram.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/util/Histogram.cpp -o libmaus2/util/la-Histogram.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/util/la-HistogramSet.lo `test -f 'libmaus2/util/HistogramSet.cpp' || echo './'`libmaus2/util/HistogramSet.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/util/HistogramSet.cpp -fPIC -DPIC -o libmaus2/util/.libs/la-HistogramSet.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/util/HistogramSet.cpp -o libmaus2/util/la-HistogramSet.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/util/la-IncreasingList.lo `test -f 'libmaus2/util/IncreasingList.cpp' || echo './'`libmaus2/util/IncreasingList.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/util/IncreasingList.cpp -fPIC -DPIC -o libmaus2/util/.libs/la-IncreasingList.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/util/IncreasingList.cpp -o libmaus2/util/la-IncreasingList.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/util/la-IntervalTree.lo `test -f 'libmaus2/util/IntervalTree.cpp' || echo './'`libmaus2/util/IntervalTree.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/util/IntervalTree.cpp -fPIC -DPIC -o libmaus2/util/.libs/la-IntervalTree.o In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/util/IntervalTree.hpp:25, from libmaus2/util/IntervalTree.cpp:20: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/util/IntervalTree.cpp -o libmaus2/util/la-IntervalTree.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/util/la-GenericIntervalTree.lo `test -f 'libmaus2/util/GenericIntervalTree.cpp' || echo './'`libmaus2/util/GenericIntervalTree.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/util/GenericIntervalTree.cpp -fPIC -DPIC -o libmaus2/util/.libs/la-GenericIntervalTree.o In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/util/IntervalTree.hpp:25, from ./libmaus2/util/GenericIntervalTree.hpp:23, from libmaus2/util/GenericIntervalTree.cpp:20: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/util/GenericIntervalTree.cpp -o libmaus2/util/la-GenericIntervalTree.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/util/la-LookupIntervalTree.lo `test -f 'libmaus2/util/LookupIntervalTree.cpp' || echo './'`libmaus2/util/LookupIntervalTree.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/util/LookupIntervalTree.cpp -fPIC -DPIC -o libmaus2/util/.libs/la-LookupIntervalTree.o In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/util/IntervalTree.hpp:25, from ./libmaus2/util/LookupIntervalTree.hpp:22, from libmaus2/util/LookupIntervalTree.cpp:20: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/util/LookupIntervalTree.cpp -o libmaus2/util/la-LookupIntervalTree.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/digest/la-md5_interface.lo `test -f 'libmaus2/digest/md5_interface.cpp' || echo './'`libmaus2/digest/md5_interface.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/digest/md5_interface.cpp -fPIC -DPIC -o libmaus2/digest/.libs/la-md5_interface.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/digest/md5_interface.cpp -o libmaus2/digest/la-md5_interface.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/util/la-MemUsage.lo `test -f 'libmaus2/util/MemUsage.cpp' || echo './'`libmaus2/util/MemUsage.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/util/MemUsage.cpp -fPIC -DPIC -o libmaus2/util/.libs/la-MemUsage.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/util/MemUsage.cpp -o libmaus2/util/la-MemUsage.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/util/la-nstat.lo `test -f 'libmaus2/util/nstat.cpp' || echo './'`libmaus2/util/nstat.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/util/nstat.cpp -fPIC -DPIC -o libmaus2/util/.libs/la-nstat.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/util/nstat.cpp -o libmaus2/util/la-nstat.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/util/la-SaturatingCounter.lo `test -f 'libmaus2/util/SaturatingCounter.cpp' || echo './'`libmaus2/util/SaturatingCounter.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/util/SaturatingCounter.cpp -fPIC -DPIC -o libmaus2/util/.libs/la-SaturatingCounter.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/util/SaturatingCounter.cpp -o libmaus2/util/la-SaturatingCounter.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/util/la-StringSerialisation.lo `test -f 'libmaus2/util/StringSerialisation.cpp' || echo './'`libmaus2/util/StringSerialisation.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/util/StringSerialisation.cpp -fPIC -DPIC -o libmaus2/util/.libs/la-StringSerialisation.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/util/StringSerialisation.cpp -o libmaus2/util/la-StringSerialisation.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/util/la-SuccinctBorderArray.lo `test -f 'libmaus2/util/SuccinctBorderArray.cpp' || echo './'`libmaus2/util/SuccinctBorderArray.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/util/SuccinctBorderArray.cpp -fPIC -DPIC -o libmaus2/util/.libs/la-SuccinctBorderArray.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/util/SuccinctBorderArray.cpp -o libmaus2/util/la-SuccinctBorderArray.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/util/la-Terminal.lo `test -f 'libmaus2/util/Terminal.cpp' || echo './'`libmaus2/util/Terminal.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/util/Terminal.cpp -fPIC -DPIC -o libmaus2/util/.libs/la-Terminal.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/util/Terminal.cpp -o libmaus2/util/la-Terminal.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/util/la-OctetString.lo `test -f 'libmaus2/util/OctetString.cpp' || echo './'`libmaus2/util/OctetString.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/util/OctetString.cpp -fPIC -DPIC -o libmaus2/util/.libs/la-OctetString.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/util/OctetString.cpp -o libmaus2/util/la-OctetString.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/util/la-Utf8String.lo `test -f 'libmaus2/util/Utf8String.cpp' || echo './'`libmaus2/util/Utf8String.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/util/Utf8String.cpp -fPIC -DPIC -o libmaus2/util/.libs/la-Utf8String.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/util/Utf8String.cpp -o libmaus2/util/la-Utf8String.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/util/la-Utf8BlockIndexDecoder.lo `test -f 'libmaus2/util/Utf8BlockIndexDecoder.cpp' || echo './'`libmaus2/util/Utf8BlockIndexDecoder.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/util/Utf8BlockIndexDecoder.cpp -fPIC -DPIC -o libmaus2/util/.libs/la-Utf8BlockIndexDecoder.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/util/Utf8BlockIndexDecoder.cpp -o libmaus2/util/la-Utf8BlockIndexDecoder.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/util/la-Utf8BlockIndex.lo `test -f 'libmaus2/util/Utf8BlockIndex.cpp' || echo './'`libmaus2/util/Utf8BlockIndex.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/util/Utf8BlockIndex.cpp -fPIC -DPIC -o libmaus2/util/.libs/la-Utf8BlockIndex.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/util/Utf8BlockIndex.cpp -o libmaus2/util/la-Utf8BlockIndex.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/util/la-Utf8DecoderBuffer.lo `test -f 'libmaus2/util/Utf8DecoderBuffer.cpp' || echo './'`libmaus2/util/Utf8DecoderBuffer.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/util/Utf8DecoderBuffer.cpp -fPIC -DPIC -o libmaus2/util/.libs/la-Utf8DecoderBuffer.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/util/Utf8DecoderBuffer.cpp -o libmaus2/util/la-Utf8DecoderBuffer.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/util/la-Utf8DecoderWrapper.lo `test -f 'libmaus2/util/Utf8DecoderWrapper.cpp' || echo './'`libmaus2/util/Utf8DecoderWrapper.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/util/Utf8DecoderWrapper.cpp -fPIC -DPIC -o libmaus2/util/.libs/la-Utf8DecoderWrapper.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/util/Utf8DecoderWrapper.cpp -o libmaus2/util/la-Utf8DecoderWrapper.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/suffixtree/la-CompressedSuffixTree.lo `test -f 'libmaus2/suffixtree/CompressedSuffixTree.cpp' || echo './'`libmaus2/suffixtree/CompressedSuffixTree.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixtree/CompressedSuffixTree.cpp -fPIC -DPIC -o libmaus2/suffixtree/.libs/la-CompressedSuffixTree.o In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/huffman/HuffmanTree.hpp:25, from ./libmaus2/wavelet/ImpCompactHuffmanWaveletTree.hpp:26, from ./libmaus2/lf/ImpCompactHuffmanWaveletLF.hpp:23, from ./libmaus2/suffixtree/CompressedSuffixTree.hpp:22, from libmaus2/suffixtree/CompressedSuffixTree.cpp:19: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/huffman/huffman.hpp:183, from ./libmaus2/util/ImpCompactNumberArray.hpp:26, from ./libmaus2/rmq/RMMTree.hpp:22, from ./libmaus2/suffixtree/CompressedSuffixTree.hpp:26: ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 2]’: ./libmaus2/huffman/HuffmanSorting.hpp:860:55: required from here 860 | huffman::EncodeTable enctable ( root ); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:188: ./libmaus2/huffman/HuffmanSorting.hpp: In instantiation of ‘static void libmaus2::huffman::HuffmanSorting::uncompressHuffmanCoded(uint64_t*, uint64_t, uint64_t, uint64_t, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::HuffmanTreeNode*, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::EncodeTable&) [with unsigned int lookupwords = 2; uint64_t = long unsigned int]’: ./libmaus2/huffman/HuffmanSorting.hpp:1091:27: required from here 1091 | uncompressHuffmanCoded(acode.get(), 0 /* bit offset */, lowhalf /* syms */, firsthighsym, enctable,dectable,root.get(),dectable0,dectable1,enctable0,enctable1); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/huffman/HuffmanSorting.hpp:534:42: warning: variable ‘alldecoffset’ set but not used [-Wunused-but-set-variable=] 534 | uint64_t alldecoffset = highdecoffset; | ^~~~~~~~~~~~ ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 1]’: ./libmaus2/wavelet/ImpHuffmanWaveletTree.hpp:302:54: required from here 302 | : n(rn), sroot(rsroot), dicts(numnodes), root(0), enctable(sroot.get()), maxdepth(0), nodepos(rnodepos) | ^~~~~~~~~~~~~~~~~~~~~ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixtree/CompressedSuffixTree.cpp -o libmaus2/suffixtree/la-CompressedSuffixTree.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/bambam/la-AlignmentValidity.lo `test -f 'libmaus2/bambam/AlignmentValidity.cpp' || echo './'`libmaus2/bambam/AlignmentValidity.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/AlignmentValidity.cpp -fPIC -DPIC -o libmaus2/bambam/.libs/la-AlignmentValidity.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/AlignmentValidity.cpp -o libmaus2/bambam/la-AlignmentValidity.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/bambam/la-BamFlagBase.lo `test -f 'libmaus2/bambam/BamFlagBase.cpp' || echo './'`libmaus2/bambam/BamFlagBase.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/BamFlagBase.cpp -fPIC -DPIC -o libmaus2/bambam/.libs/la-BamFlagBase.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/BamFlagBase.cpp -o libmaus2/bambam/la-BamFlagBase.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/bambam/la-ReadGroup.lo `test -f 'libmaus2/bambam/ReadGroup.cpp' || echo './'`libmaus2/bambam/ReadGroup.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/ReadGroup.cpp -fPIC -DPIC -o libmaus2/bambam/.libs/la-ReadGroup.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/ReadGroup.cpp -o libmaus2/bambam/la-ReadGroup.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/bambam/la-DuplicationMetrics.lo `test -f 'libmaus2/bambam/DuplicationMetrics.cpp' || echo './'`libmaus2/bambam/DuplicationMetrics.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/DuplicationMetrics.cpp -fPIC -DPIC -o libmaus2/bambam/.libs/la-DuplicationMetrics.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/DuplicationMetrics.cpp -o libmaus2/bambam/la-DuplicationMetrics.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/bambam/la-BamDefaultAdapters.lo `test -f 'libmaus2/bambam/BamDefaultAdapters.cpp' || echo './'`libmaus2/bambam/BamDefaultAdapters.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/BamDefaultAdapters.cpp -fPIC -DPIC -o libmaus2/bambam/.libs/la-BamDefaultAdapters.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/BamDefaultAdapters.cpp -o libmaus2/bambam/la-BamDefaultAdapters.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/bambam/la-BamRange.lo `test -f 'libmaus2/bambam/BamRange.cpp' || echo './'`libmaus2/bambam/BamRange.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/BamRange.cpp -fPIC -DPIC -o libmaus2/bambam/.libs/la-BamRange.o In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/bambam/BamAuxFilterVector.hpp:22, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:27, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamRange.hpp:22, from libmaus2/bambam/BamRange.cpp:20: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/bambam/CigarStringParser.hpp:25, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/BamRange.cpp -o libmaus2/bambam/la-BamRange.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/bambam/la-BamIndexBinChunk.lo `test -f 'libmaus2/bambam/BamIndexBinChunk.cpp' || echo './'`libmaus2/bambam/BamIndexBinChunk.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/BamIndexBinChunk.cpp -fPIC -DPIC -o libmaus2/bambam/.libs/la-BamIndexBinChunk.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/BamIndexBinChunk.cpp -o libmaus2/bambam/la-BamIndexBinChunk.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/bambam/la-BamIndexLinearChunk.lo `test -f 'libmaus2/bambam/BamIndexLinearChunk.cpp' || echo './'`libmaus2/bambam/BamIndexLinearChunk.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/BamIndexLinearChunk.cpp -fPIC -DPIC -o libmaus2/bambam/.libs/la-BamIndexLinearChunk.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/BamIndexLinearChunk.cpp -o libmaus2/bambam/la-BamIndexLinearChunk.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/huffman/la-HuffmanTree.lo `test -f 'libmaus2/huffman/HuffmanTree.cpp' || echo './'`libmaus2/huffman/HuffmanTree.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/huffman/HuffmanTree.cpp -fPIC -DPIC -o libmaus2/huffman/.libs/la-HuffmanTree.o In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/huffman/HuffmanTree.hpp:25, from libmaus2/huffman/HuffmanTree.cpp:19: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/huffman/HuffmanTree.cpp -o libmaus2/huffman/la-HuffmanTree.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/bambam/la-BamAlignmentDecoderInfo.lo `test -f 'libmaus2/bambam/BamAlignmentDecoderInfo.cpp' || echo './'`libmaus2/bambam/BamAlignmentDecoderInfo.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/BamAlignmentDecoderInfo.cpp -fPIC -DPIC -o libmaus2/bambam/.libs/la-BamAlignmentDecoderInfo.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/BamAlignmentDecoderInfo.cpp -o libmaus2/bambam/la-BamAlignmentDecoderInfo.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/lz/la-Lz4Base.lo `test -f 'libmaus2/lz/Lz4Base.cpp' || echo './'`libmaus2/lz/Lz4Base.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lz/Lz4Base.cpp -fPIC -DPIC -o libmaus2/lz/.libs/la-Lz4Base.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lz/Lz4Base.cpp -o libmaus2/lz/la-Lz4Base.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/lz/la-Lz4Compress.lo `test -f 'libmaus2/lz/Lz4Compress.cpp' || echo './'`libmaus2/lz/Lz4Compress.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lz/Lz4Compress.cpp -fPIC -DPIC -o libmaus2/lz/.libs/la-Lz4Compress.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lz/Lz4Compress.cpp -o libmaus2/lz/la-Lz4Compress.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/lz/la-Lz4DecoderBuffer.lo `test -f 'libmaus2/lz/Lz4DecoderBuffer.cpp' || echo './'`libmaus2/lz/Lz4DecoderBuffer.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lz/Lz4DecoderBuffer.cpp -fPIC -DPIC -o libmaus2/lz/.libs/la-Lz4DecoderBuffer.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lz/Lz4DecoderBuffer.cpp -o libmaus2/lz/la-Lz4DecoderBuffer.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=compile powerpc64le-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/lz/la-lz4.lo `test -f 'libmaus2/lz/lz4.c' || echo './'`libmaus2/lz/lz4.c libtool: compile: powerpc64le-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lz/lz4.c -fPIC -DPIC -o libmaus2/lz/.libs/la-lz4.o libtool: compile: powerpc64le-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lz/lz4.c -o libmaus2/lz/la-lz4.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/fm/la-BidirectionalIndexInterval.lo `test -f 'libmaus2/fm/BidirectionalIndexInterval.cpp' || echo './'`libmaus2/fm/BidirectionalIndexInterval.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/fm/BidirectionalIndexInterval.cpp -fPIC -DPIC -o libmaus2/fm/.libs/la-BidirectionalIndexInterval.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/fm/BidirectionalIndexInterval.cpp -o libmaus2/fm/la-BidirectionalIndexInterval.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/fm/la-BidirectionalIndexIntervalSymbol.lo `test -f 'libmaus2/fm/BidirectionalIndexIntervalSymbol.cpp' || echo './'`libmaus2/fm/BidirectionalIndexIntervalSymbol.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/fm/BidirectionalIndexIntervalSymbol.cpp -fPIC -DPIC -o libmaus2/fm/.libs/la-BidirectionalIndexIntervalSymbol.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/fm/BidirectionalIndexIntervalSymbol.cpp -o libmaus2/fm/la-BidirectionalIndexIntervalSymbol.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/gamma/la-SparseGammaGapFileIndexDecoderEntry.lo `test -f 'libmaus2/gamma/SparseGammaGapFileIndexDecoderEntry.cpp' || echo './'`libmaus2/gamma/SparseGammaGapFileIndexDecoderEntry.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/gamma/SparseGammaGapFileIndexDecoderEntry.cpp -fPIC -DPIC -o libmaus2/gamma/.libs/la-SparseGammaGapFileIndexDecoderEntry.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/gamma/SparseGammaGapFileIndexDecoderEntry.cpp -o libmaus2/gamma/la-SparseGammaGapFileIndexDecoderEntry.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/fastx/la-FastALineParserLineInfo.lo `test -f 'libmaus2/fastx/FastALineParserLineInfo.cpp' || echo './'`libmaus2/fastx/FastALineParserLineInfo.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/fastx/FastALineParserLineInfo.cpp -fPIC -DPIC -o libmaus2/fastx/.libs/la-FastALineParserLineInfo.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/fastx/FastALineParserLineInfo.cpp -o libmaus2/fastx/la-FastALineParserLineInfo.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/fastx/la-FastAMatchTable.lo `test -f 'libmaus2/fastx/FastAMatchTable.cpp' || echo './'`libmaus2/fastx/FastAMatchTable.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/fastx/FastAMatchTable.cpp -fPIC -DPIC -o libmaus2/fastx/.libs/la-FastAMatchTable.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/fastx/FastAMatchTable.cpp -o libmaus2/fastx/la-FastAMatchTable.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/lcs/la-EditDistanceResult.lo `test -f 'libmaus2/lcs/EditDistanceResult.cpp' || echo './'`libmaus2/lcs/EditDistanceResult.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lcs/EditDistanceResult.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/la-EditDistanceResult.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lcs/EditDistanceResult.cpp -o libmaus2/lcs/la-EditDistanceResult.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/fastx/la-FastABgzfIndexEntry.lo `test -f 'libmaus2/fastx/FastABgzfIndexEntry.cpp' || echo './'`libmaus2/fastx/FastABgzfIndexEntry.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/fastx/FastABgzfIndexEntry.cpp -fPIC -DPIC -o libmaus2/fastx/.libs/la-FastABgzfIndexEntry.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/fastx/FastABgzfIndexEntry.cpp -o libmaus2/fastx/la-FastABgzfIndexEntry.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/fastx/la-FastABgzfIndex.lo `test -f 'libmaus2/fastx/FastABgzfIndex.cpp' || echo './'`libmaus2/fastx/FastABgzfIndex.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/fastx/FastABgzfIndex.cpp -fPIC -DPIC -o libmaus2/fastx/.libs/la-FastABgzfIndex.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/fastx/FastABgzfIndex.cpp -o libmaus2/fastx/la-FastABgzfIndex.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/fastx/la-FastAIndexEntry.lo `test -f 'libmaus2/fastx/FastAIndexEntry.cpp' || echo './'`libmaus2/fastx/FastAIndexEntry.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/fastx/FastAIndexEntry.cpp -fPIC -DPIC -o libmaus2/fastx/.libs/la-FastAIndexEntry.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/fastx/FastAIndexEntry.cpp -o libmaus2/fastx/la-FastAIndexEntry.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/fastx/la-FastAIndex.lo `test -f 'libmaus2/fastx/FastAIndex.cpp' || echo './'`libmaus2/fastx/FastAIndex.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/fastx/FastAIndex.cpp -fPIC -DPIC -o libmaus2/fastx/.libs/la-FastAIndex.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/fastx/FastAIndex.cpp -o libmaus2/fastx/la-FastAIndex.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/hashing/la-Crc32.lo `test -f 'libmaus2/hashing/Crc32.cpp' || echo './'`libmaus2/hashing/Crc32.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/hashing/Crc32.cpp -fPIC -DPIC -o libmaus2/hashing/.libs/la-Crc32.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/hashing/Crc32.cpp -o libmaus2/hashing/la-Crc32.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/hashing/la-MurmurHash3.lo `test -f 'libmaus2/hashing/MurmurHash3.cpp' || echo './'`libmaus2/hashing/MurmurHash3.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/hashing/MurmurHash3.cpp -fPIC -DPIC -o libmaus2/hashing/.libs/la-MurmurHash3.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/hashing/MurmurHash3.cpp -o libmaus2/hashing/la-MurmurHash3.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/lcs/la-LocalBaseConstants.lo `test -f 'libmaus2/lcs/LocalBaseConstants.cpp' || echo './'`libmaus2/lcs/LocalBaseConstants.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lcs/LocalBaseConstants.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/la-LocalBaseConstants.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lcs/LocalBaseConstants.cpp -o libmaus2/lcs/la-LocalBaseConstants.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/lcs/la-LocalEditDistanceResult.lo `test -f 'libmaus2/lcs/LocalEditDistanceResult.cpp' || echo './'`libmaus2/lcs/LocalEditDistanceResult.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lcs/LocalEditDistanceResult.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/la-LocalEditDistanceResult.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lcs/LocalEditDistanceResult.cpp -o libmaus2/lcs/la-LocalEditDistanceResult.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/bambam/la-BamHeaderParserStateBase.lo `test -f 'libmaus2/bambam/BamHeaderParserStateBase.cpp' || echo './'`libmaus2/bambam/BamHeaderParserStateBase.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/BamHeaderParserStateBase.cpp -fPIC -DPIC -o libmaus2/bambam/.libs/la-BamHeaderParserStateBase.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/BamHeaderParserStateBase.cpp -o libmaus2/bambam/la-BamHeaderParserStateBase.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/bambam/la-GeneFlatFile.lo `test -f 'libmaus2/bambam/GeneFlatFile.cpp' || echo './'`libmaus2/bambam/GeneFlatFile.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/GeneFlatFile.cpp -fPIC -DPIC -o libmaus2/bambam/.libs/la-GeneFlatFile.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/GeneFlatFile.cpp -o libmaus2/bambam/la-GeneFlatFile.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/bambam/la-GeneFlatFileEntry.lo `test -f 'libmaus2/bambam/GeneFlatFileEntry.cpp' || echo './'`libmaus2/bambam/GeneFlatFileEntry.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/GeneFlatFileEntry.cpp -fPIC -DPIC -o libmaus2/bambam/.libs/la-GeneFlatFileEntry.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/GeneFlatFileEntry.cpp -o libmaus2/bambam/la-GeneFlatFileEntry.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/trie/la-SimpleTrie.lo `test -f 'libmaus2/trie/SimpleTrie.cpp' || echo './'`libmaus2/trie/SimpleTrie.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/trie/SimpleTrie.cpp -fPIC -DPIC -o libmaus2/trie/.libs/la-SimpleTrie.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/trie/SimpleTrie.cpp -o libmaus2/trie/la-SimpleTrie.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/bambam/la-BamStreamingMarkDuplicatesSupport.lo `test -f 'libmaus2/bambam/BamStreamingMarkDuplicatesSupport.cpp' || echo './'`libmaus2/bambam/BamStreamingMarkDuplicatesSupport.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/BamStreamingMarkDuplicatesSupport.cpp -fPIC -DPIC -o libmaus2/bambam/.libs/la-BamStreamingMarkDuplicatesSupport.o In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/bambam/BamAuxFilterVector.hpp:22, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:27, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamStreamingMarkDuplicatesSupport.hpp:22, from libmaus2/bambam/BamStreamingMarkDuplicatesSupport.cpp:19: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/bambam/CigarStringParser.hpp:25, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ In file included from ./libmaus2/bambam/BamAlignmentDecoder.hpp:24, from ./libmaus2/bambam/BamStreamingMarkDuplicatesSupport.hpp:23: ./libmaus2/bambam/BamHeaderLowMem.hpp: In member function ‘void libmaus2::bambam::BamHeaderLowMem::setupFromText()’: ./libmaus2/bambam/BamHeaderLowMem.hpp:366:58: warning: variable ‘ln’ set but not used [-Wunused-but-set-variable=] 366 | uint64_t ln = 0; | ^~ libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/BamStreamingMarkDuplicatesSupport.cpp -o libmaus2/bambam/la-BamStreamingMarkDuplicatesSupport.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/alignment/la-FactorMatchInfo.lo `test -f 'libmaus2/alignment/FactorMatchInfo.cpp' || echo './'`libmaus2/alignment/FactorMatchInfo.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/alignment/FactorMatchInfo.cpp -fPIC -DPIC -o libmaus2/alignment/.libs/la-FactorMatchInfo.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/alignment/FactorMatchInfo.cpp -o libmaus2/alignment/la-FactorMatchInfo.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/alignment/la-KmerInfo.lo `test -f 'libmaus2/alignment/KmerInfo.cpp' || echo './'`libmaus2/alignment/KmerInfo.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/alignment/KmerInfo.cpp -fPIC -DPIC -o libmaus2/alignment/.libs/la-KmerInfo.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/alignment/KmerInfo.cpp -o libmaus2/alignment/la-KmerInfo.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/bambam/la-SamInfoBase.lo `test -f 'libmaus2/bambam/SamInfoBase.cpp' || echo './'`libmaus2/bambam/SamInfoBase.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/SamInfoBase.cpp -fPIC -DPIC -o libmaus2/bambam/.libs/la-SamInfoBase.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/SamInfoBase.cpp -o libmaus2/bambam/la-SamInfoBase.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/digest/la-SHA1.lo `test -f 'libmaus2/digest/SHA1.cpp' || echo './'`libmaus2/digest/SHA1.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/digest/SHA1.cpp -fPIC -DPIC -o libmaus2/digest/.libs/la-SHA1.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/digest/SHA1.cpp -o libmaus2/digest/la-SHA1.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/digest/la-SHA2_224.lo `test -f 'libmaus2/digest/SHA2_224.cpp' || echo './'`libmaus2/digest/SHA2_224.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/digest/SHA2_224.cpp -fPIC -DPIC -o libmaus2/digest/.libs/la-SHA2_224.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/digest/SHA2_224.cpp -o libmaus2/digest/la-SHA2_224.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/digest/la-SHA2_256.lo `test -f 'libmaus2/digest/SHA2_256.cpp' || echo './'`libmaus2/digest/SHA2_256.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/digest/SHA2_256.cpp -fPIC -DPIC -o libmaus2/digest/.libs/la-SHA2_256.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/digest/SHA2_256.cpp -o libmaus2/digest/la-SHA2_256.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/digest/la-SHA2_384.lo `test -f 'libmaus2/digest/SHA2_384.cpp' || echo './'`libmaus2/digest/SHA2_384.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/digest/SHA2_384.cpp -fPIC -DPIC -o libmaus2/digest/.libs/la-SHA2_384.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/digest/SHA2_384.cpp -o libmaus2/digest/la-SHA2_384.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/digest/la-SHA2_512.lo `test -f 'libmaus2/digest/SHA2_512.cpp' || echo './'`libmaus2/digest/SHA2_512.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/digest/SHA2_512.cpp -fPIC -DPIC -o libmaus2/digest/.libs/la-SHA2_512.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/digest/SHA2_512.cpp -o libmaus2/digest/la-SHA2_512.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/digest/la-CRC32.lo `test -f 'libmaus2/digest/CRC32.cpp' || echo './'`libmaus2/digest/CRC32.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/digest/CRC32.cpp -fPIC -DPIC -o libmaus2/digest/.libs/la-CRC32.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/digest/CRC32.cpp -o libmaus2/digest/la-CRC32.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/digest/la-CRC32C_Core.lo `test -f 'libmaus2/digest/CRC32C_Core.cpp' || echo './'`libmaus2/digest/CRC32C_Core.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/digest/CRC32C_Core.cpp -fPIC -DPIC -o libmaus2/digest/.libs/la-CRC32C_Core.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/digest/CRC32C_Core.cpp -o libmaus2/digest/la-CRC32C_Core.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/digest/la-CRC32C.lo `test -f 'libmaus2/digest/CRC32C.cpp' || echo './'`libmaus2/digest/CRC32C.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/digest/CRC32C.cpp -fPIC -DPIC -o libmaus2/digest/.libs/la-CRC32C.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/digest/CRC32C.cpp -o libmaus2/digest/la-CRC32C.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/digest/la-CRC32_Core.lo `test -f 'libmaus2/digest/CRC32_Core.cpp' || echo './'`libmaus2/digest/CRC32_Core.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/digest/CRC32_Core.cpp -fPIC -DPIC -o libmaus2/digest/.libs/la-CRC32_Core.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/digest/CRC32_Core.cpp -o libmaus2/digest/la-CRC32_Core.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/bambam/parallel/la-ValidationFragment.lo `test -f 'libmaus2/bambam/parallel/ValidationFragment.cpp' || echo './'`libmaus2/bambam/parallel/ValidationFragment.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/parallel/ValidationFragment.cpp -fPIC -DPIC -o libmaus2/bambam/parallel/.libs/la-ValidationFragment.o In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/bambam/BamAuxFilterVector.hpp:22, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:27, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/parallel/PushBackSpace.hpp:22, from ./libmaus2/bambam/parallel/AlignmentBuffer.hpp:22, from ./libmaus2/bambam/parallel/ValidationFragment.hpp:22, from libmaus2/bambam/parallel/ValidationFragment.cpp:19: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/bambam/CigarStringParser.hpp:25, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/parallel/ValidationFragment.cpp -o libmaus2/bambam/parallel/la-ValidationFragment.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/bambam/parallel/la-GenericInputControlStreamInfo.lo `test -f 'libmaus2/bambam/parallel/GenericInputControlStreamInfo.cpp' || echo './'`libmaus2/bambam/parallel/GenericInputControlStreamInfo.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/parallel/GenericInputControlStreamInfo.cpp -fPIC -DPIC -o libmaus2/bambam/parallel/.libs/la-GenericInputControlStreamInfo.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/parallel/GenericInputControlStreamInfo.cpp -o libmaus2/bambam/parallel/la-GenericInputControlStreamInfo.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/fastx/la-NameInfoBase.lo `test -f 'libmaus2/fastx/NameInfoBase.cpp' || echo './'`libmaus2/fastx/NameInfoBase.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/fastx/NameInfoBase.cpp -fPIC -DPIC -o libmaus2/fastx/.libs/la-NameInfoBase.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/fastx/NameInfoBase.cpp -o libmaus2/fastx/la-NameInfoBase.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/bambam/parallel/la-RefIdInterval.lo `test -f 'libmaus2/bambam/parallel/RefIdInterval.cpp' || echo './'`libmaus2/bambam/parallel/RefIdInterval.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/parallel/RefIdInterval.cpp -fPIC -DPIC -o libmaus2/bambam/parallel/.libs/la-RefIdInterval.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/parallel/RefIdInterval.cpp -o libmaus2/bambam/parallel/la-RefIdInterval.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/fastx/la-RefPathToken.lo `test -f 'libmaus2/fastx/RefPathToken.cpp' || echo './'`libmaus2/fastx/RefPathToken.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/fastx/RefPathToken.cpp -fPIC -DPIC -o libmaus2/fastx/.libs/la-RefPathToken.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/fastx/RefPathToken.cpp -o libmaus2/fastx/la-RefPathToken.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/fastx/la-RefPathTokenVector.lo `test -f 'libmaus2/fastx/RefPathTokenVector.cpp' || echo './'`libmaus2/fastx/RefPathTokenVector.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/fastx/RefPathTokenVector.cpp -fPIC -DPIC -o libmaus2/fastx/.libs/la-RefPathTokenVector.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/fastx/RefPathTokenVector.cpp -o libmaus2/fastx/la-RefPathTokenVector.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/dazzler/db/la-FastaInfo.lo `test -f 'libmaus2/dazzler/db/FastaInfo.cpp' || echo './'`libmaus2/dazzler/db/FastaInfo.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/dazzler/db/FastaInfo.cpp -fPIC -DPIC -o libmaus2/dazzler/db/.libs/la-FastaInfo.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/dazzler/db/FastaInfo.cpp -o libmaus2/dazzler/db/la-FastaInfo.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/dazzler/db/la-IndexBase.lo `test -f 'libmaus2/dazzler/db/IndexBase.cpp' || echo './'`libmaus2/dazzler/db/IndexBase.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/dazzler/db/IndexBase.cpp -fPIC -DPIC -o libmaus2/dazzler/db/.libs/la-IndexBase.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/dazzler/db/IndexBase.cpp -o libmaus2/dazzler/db/la-IndexBase.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/dazzler/db/la-DatabaseFile.lo `test -f 'libmaus2/dazzler/db/DatabaseFile.cpp' || echo './'`libmaus2/dazzler/db/DatabaseFile.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/dazzler/db/DatabaseFile.cpp -fPIC -DPIC -o libmaus2/dazzler/db/.libs/la-DatabaseFile.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/dazzler/db/DatabaseFile.cpp -o libmaus2/dazzler/db/la-DatabaseFile.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/dazzler/db/la-Read.lo `test -f 'libmaus2/dazzler/db/Read.cpp' || echo './'`libmaus2/dazzler/db/Read.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/dazzler/db/Read.cpp -fPIC -DPIC -o libmaus2/dazzler/db/.libs/la-Read.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/dazzler/db/Read.cpp -o libmaus2/dazzler/db/la-Read.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/dazzler/align/la-Path.lo `test -f 'libmaus2/dazzler/align/Path.cpp' || echo './'`libmaus2/dazzler/align/Path.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/dazzler/align/Path.cpp -fPIC -DPIC -o libmaus2/dazzler/align/.libs/la-Path.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/dazzler/align/Path.cpp -o libmaus2/dazzler/align/la-Path.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/dazzler/align/la-Overlap.lo `test -f 'libmaus2/dazzler/align/Overlap.cpp' || echo './'`libmaus2/dazzler/align/Overlap.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/dazzler/align/Overlap.cpp -fPIC -DPIC -o libmaus2/dazzler/align/.libs/la-Overlap.o In file included from ./libmaus2/lcs/Aligner.hpp:21, from ./libmaus2/dazzler/align/Overlap.hpp:22, from libmaus2/dazzler/align/Overlap.cpp:18: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/dazzler/align/Overlap.cpp -o libmaus2/dazzler/align/la-Overlap.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/lcs/la-AlignmentStatistics.lo `test -f 'libmaus2/lcs/AlignmentStatistics.cpp' || echo './'`libmaus2/lcs/AlignmentStatistics.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lcs/AlignmentStatistics.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/la-AlignmentStatistics.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lcs/AlignmentStatistics.cpp -o libmaus2/lcs/la-AlignmentStatistics.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/fastx/la-SingleWordDNABitBuffer.lo `test -f 'libmaus2/fastx/SingleWordDNABitBuffer.cpp' || echo './'`libmaus2/fastx/SingleWordDNABitBuffer.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/fastx/SingleWordDNABitBuffer.cpp -fPIC -DPIC -o libmaus2/fastx/.libs/la-SingleWordDNABitBuffer.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/fastx/SingleWordDNABitBuffer.cpp -o libmaus2/fastx/la-SingleWordDNABitBuffer.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/util/la-LongestIncreasingSubsequenceExtendedResult.lo `test -f 'libmaus2/util/LongestIncreasingSubsequenceExtendedResult.cpp' || echo './'`libmaus2/util/LongestIncreasingSubsequenceExtendedResult.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/util/LongestIncreasingSubsequenceExtendedResult.cpp -fPIC -DPIC -o libmaus2/util/.libs/la-LongestIncreasingSubsequenceExtendedResult.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/util/LongestIncreasingSubsequenceExtendedResult.cpp -o libmaus2/util/la-LongestIncreasingSubsequenceExtendedResult.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/lcs/la-AlignerFactory.lo `test -f 'libmaus2/lcs/AlignerFactory.cpp' || echo './'`libmaus2/lcs/AlignerFactory.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lcs/AlignerFactory.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/la-AlignerFactory.o In file included from ./libmaus2/lcs/Aligner.hpp:21, from ./libmaus2/lcs/AlignerFactory.hpp:21, from libmaus2/lcs/AlignerFactory.cpp:19: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lcs/AlignerFactory.cpp -o libmaus2/lcs/la-AlignerFactory.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/lcs/la-BandedAlignerFactory.lo `test -f 'libmaus2/lcs/BandedAlignerFactory.cpp' || echo './'`libmaus2/lcs/BandedAlignerFactory.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lcs/BandedAlignerFactory.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/la-BandedAlignerFactory.o In file included from ./libmaus2/lcs/BandedAligner.hpp:21, from ./libmaus2/lcs/BandedAlignerFactory.hpp:21, from libmaus2/lcs/BandedAlignerFactory.cpp:19: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lcs/BandedAlignerFactory.cpp -o libmaus2/lcs/la-BandedAlignerFactory.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/aio/la-InputStreamInstance.lo `test -f 'libmaus2/aio/InputStreamInstance.cpp' || echo './'`libmaus2/aio/InputStreamInstance.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/aio/InputStreamInstance.cpp -fPIC -DPIC -o libmaus2/aio/.libs/la-InputStreamInstance.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/aio/InputStreamInstance.cpp -o libmaus2/aio/la-InputStreamInstance.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/aio/la-OutputStreamInstance.lo `test -f 'libmaus2/aio/OutputStreamInstance.cpp' || echo './'`libmaus2/aio/OutputStreamInstance.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/aio/OutputStreamInstance.cpp -fPIC -DPIC -o libmaus2/aio/.libs/la-OutputStreamInstance.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/aio/OutputStreamInstance.cpp -o libmaus2/aio/la-OutputStreamInstance.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/aio/la-OutputStreamFactoryContainer.lo `test -f 'libmaus2/aio/OutputStreamFactoryContainer.cpp' || echo './'`libmaus2/aio/OutputStreamFactoryContainer.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/aio/OutputStreamFactoryContainer.cpp -fPIC -DPIC -o libmaus2/aio/.libs/la-OutputStreamFactoryContainer.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/aio/OutputStreamFactoryContainer.cpp -o libmaus2/aio/la-OutputStreamFactoryContainer.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/dazzler/align/la-TraceBlock.lo `test -f 'libmaus2/dazzler/align/TraceBlock.cpp' || echo './'`libmaus2/dazzler/align/TraceBlock.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/dazzler/align/TraceBlock.cpp -fPIC -DPIC -o libmaus2/dazzler/align/.libs/la-TraceBlock.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/dazzler/align/TraceBlock.cpp -o libmaus2/dazzler/align/la-TraceBlock.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/dazzler/align/la-ApproximateRun.lo `test -f 'libmaus2/dazzler/align/ApproximateRun.cpp' || echo './'`libmaus2/dazzler/align/ApproximateRun.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/dazzler/align/ApproximateRun.cpp -fPIC -DPIC -o libmaus2/dazzler/align/.libs/la-ApproximateRun.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/dazzler/align/ApproximateRun.cpp -o libmaus2/dazzler/align/la-ApproximateRun.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/suffixsort/la-BwtMergeBlockSortRequest.lo `test -f 'libmaus2/suffixsort/BwtMergeBlockSortRequest.cpp' || echo './'`libmaus2/suffixsort/BwtMergeBlockSortRequest.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/BwtMergeBlockSortRequest.cpp -fPIC -DPIC -o libmaus2/suffixsort/.libs/la-BwtMergeBlockSortRequest.o In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/huffman/HuffmanTree.hpp:25, from ./libmaus2/suffixsort/BwtMergeBlockSortRequest.hpp:23, from libmaus2/suffixsort/BwtMergeBlockSortRequest.cpp:19: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/suffixsort/BwtMergeTempFileNameSet.hpp:27, from ./libmaus2/suffixsort/BwtMergeBlockSortResult.hpp:22, from ./libmaus2/suffixsort/BwtMergeBlockSortRequest.hpp:30: ./libmaus2/util/DirectoryStructure.hpp: In member function ‘std::string libmaus2::util::DirectoryStructure::printGenerate(std::ostream&, std::string, uint64_t) const’: ./libmaus2/util/DirectoryStructure.hpp:207:58: warning: variable ‘batchcnt’ set but not used [-Wunused-but-set-variable=] 207 | uint64_t batchcnt = 0; | ^~~~~~~~ ./libmaus2/util/DirectoryStructure.hpp: In member function ‘std::string libmaus2::util::DirectoryStructure::printRemove(std::ostream&, std::string, uint64_t) const’: ./libmaus2/util/DirectoryStructure.hpp:282:58: warning: variable ‘batchcnt’ set but not used [-Wunused-but-set-variable=] 282 | uint64_t batchcnt = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:183, from ./libmaus2/suffixsort/BwtMergeBlockSortRequest.hpp:24: ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 2]’: ./libmaus2/huffman/HuffmanSorting.hpp:860:55: required from here 860 | huffman::EncodeTable enctable ( root ); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:188: ./libmaus2/huffman/HuffmanSorting.hpp: In instantiation of ‘static void libmaus2::huffman::HuffmanSorting::uncompressHuffmanCoded(uint64_t*, uint64_t, uint64_t, uint64_t, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::HuffmanTreeNode*, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::EncodeTable&) [with unsigned int lookupwords = 2; uint64_t = long unsigned int]’: ./libmaus2/huffman/HuffmanSorting.hpp:1091:27: required from here 1091 | uncompressHuffmanCoded(acode.get(), 0 /* bit offset */, lowhalf /* syms */, firsthighsym, enctable,dectable,root.get(),dectable0,dectable1,enctable0,enctable1); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/huffman/HuffmanSorting.hpp:534:42: warning: variable ‘alldecoffset’ set but not used [-Wunused-but-set-variable=] 534 | uint64_t alldecoffset = highdecoffset; | ^~~~~~~~~~~~ ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 1]’: ./libmaus2/huffman/CanonicalEncoder.hpp:219:116: required from here 219 | return ::libmaus2::huffman::EncodeTable<1>::unique_ptr_type(new ::libmaus2::huffman::EncodeTable<1>(Ptree.get())); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/BwtMergeBlockSortRequest.cpp -o libmaus2/suffixsort/la-BwtMergeBlockSortRequest.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/dazzler/align/la-OverlapMeta.lo `test -f 'libmaus2/dazzler/align/OverlapMeta.cpp' || echo './'`libmaus2/dazzler/align/OverlapMeta.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/dazzler/align/OverlapMeta.cpp -fPIC -DPIC -o libmaus2/dazzler/align/.libs/la-OverlapMeta.o In file included from ./libmaus2/lcs/Aligner.hpp:21, from ./libmaus2/dazzler/align/Overlap.hpp:22, from ./libmaus2/dazzler/align/OverlapMeta.hpp:21, from libmaus2/dazzler/align/OverlapMeta.cpp:18: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/dazzler/align/OverlapMeta.cpp -o libmaus2/dazzler/align/la-OverlapMeta.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/dazzler/align/la-Tandem.lo `test -f 'libmaus2/dazzler/align/Tandem.cpp' || echo './'`libmaus2/dazzler/align/Tandem.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/dazzler/align/Tandem.cpp -fPIC -DPIC -o libmaus2/dazzler/align/.libs/la-Tandem.o In file included from ./libmaus2/lcs/Aligner.hpp:21, from ./libmaus2/dazzler/align/Overlap.hpp:22, from ./libmaus2/dazzler/align/OverlapMeta.hpp:21, from ./libmaus2/dazzler/align/Tandem.hpp:21, from libmaus2/dazzler/align/Tandem.cpp:19: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/dazzler/align/Tandem.cpp -o libmaus2/dazzler/align/la-Tandem.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/dazzler/align/la-TandemVector.lo `test -f 'libmaus2/dazzler/align/TandemVector.cpp' || echo './'`libmaus2/dazzler/align/TandemVector.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/dazzler/align/TandemVector.cpp -fPIC -DPIC -o libmaus2/dazzler/align/.libs/la-TandemVector.o In file included from ./libmaus2/lcs/Aligner.hpp:21, from ./libmaus2/dazzler/align/Overlap.hpp:22, from ./libmaus2/dazzler/align/OverlapMeta.hpp:21, from ./libmaus2/dazzler/align/Tandem.hpp:21, from ./libmaus2/dazzler/align/TandemVector.hpp:21, from libmaus2/dazzler/align/TandemVector.cpp:18: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/dazzler/align/TandemVector.cpp -o libmaus2/dazzler/align/la-TandemVector.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/math/la-GmpInteger.lo `test -f 'libmaus2/math/GmpInteger.cpp' || echo './'`libmaus2/math/GmpInteger.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/math/GmpInteger.cpp -fPIC -DPIC -o libmaus2/math/.libs/la-GmpInteger.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/math/GmpInteger.cpp -o libmaus2/math/la-GmpInteger.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/math/la-GmpFloat.lo `test -f 'libmaus2/math/GmpFloat.cpp' || echo './'`libmaus2/math/GmpFloat.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/math/GmpFloat.cpp -fPIC -DPIC -o libmaus2/math/.libs/la-GmpFloat.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/math/GmpFloat.cpp -o libmaus2/math/la-GmpFloat.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/dazzler/align/la-TracePoint.lo `test -f 'libmaus2/dazzler/align/TracePoint.cpp' || echo './'`libmaus2/dazzler/align/TracePoint.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/dazzler/align/TracePoint.cpp -fPIC -DPIC -o libmaus2/dazzler/align/.libs/la-TracePoint.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/dazzler/align/TracePoint.cpp -o libmaus2/dazzler/align/la-TracePoint.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/lz/la-XzDecoder.lo `test -f 'libmaus2/lz/XzDecoder.cpp' || echo './'`libmaus2/lz/XzDecoder.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lz/XzDecoder.cpp -fPIC -DPIC -o libmaus2/lz/.libs/la-XzDecoder.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lz/XzDecoder.cpp -o libmaus2/lz/la-XzDecoder.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/util/la-ArgParser.lo `test -f 'libmaus2/util/ArgParser.cpp' || echo './'`libmaus2/util/ArgParser.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/util/ArgParser.cpp -fPIC -DPIC -o libmaus2/util/.libs/la-ArgParser.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/util/ArgParser.cpp -o libmaus2/util/la-ArgParser.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/fastx/la-DNAIndexMetaDataSequence.lo `test -f 'libmaus2/fastx/DNAIndexMetaDataSequence.cpp' || echo './'`libmaus2/fastx/DNAIndexMetaDataSequence.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/fastx/DNAIndexMetaDataSequence.cpp -fPIC -DPIC -o libmaus2/fastx/.libs/la-DNAIndexMetaDataSequence.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/fastx/DNAIndexMetaDataSequence.cpp -o libmaus2/fastx/la-DNAIndexMetaDataSequence.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/fastx/la-DNAIndexMetaData.lo `test -f 'libmaus2/fastx/DNAIndexMetaData.cpp' || echo './'`libmaus2/fastx/DNAIndexMetaData.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/fastx/DNAIndexMetaData.cpp -fPIC -DPIC -o libmaus2/fastx/.libs/la-DNAIndexMetaData.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/fastx/DNAIndexMetaData.cpp -o libmaus2/fastx/la-DNAIndexMetaData.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/bambam/la-PileVectorElement.lo `test -f 'libmaus2/bambam/PileVectorElement.cpp' || echo './'`libmaus2/bambam/PileVectorElement.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/PileVectorElement.cpp -fPIC -DPIC -o libmaus2/bambam/.libs/la-PileVectorElement.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/PileVectorElement.cpp -o libmaus2/bambam/la-PileVectorElement.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/bambam/la-PileQualityVectorElement.lo `test -f 'libmaus2/bambam/PileQualityVectorElement.cpp' || echo './'`libmaus2/bambam/PileQualityVectorElement.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/PileQualityVectorElement.cpp -fPIC -DPIC -o libmaus2/bambam/.libs/la-PileQualityVectorElement.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/PileQualityVectorElement.cpp -o libmaus2/bambam/la-PileQualityVectorElement.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/digest/la-SHA3_256.lo `test -f 'libmaus2/digest/SHA3_256.cpp' || echo './'`libmaus2/digest/SHA3_256.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/digest/SHA3_256.cpp -fPIC -DPIC -o libmaus2/digest/.libs/la-SHA3_256.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/digest/SHA3_256.cpp -o libmaus2/digest/la-SHA3_256.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/fastx/la-DNAIndexMetaDataBigBand.lo `test -f 'libmaus2/fastx/DNAIndexMetaDataBigBand.cpp' || echo './'`libmaus2/fastx/DNAIndexMetaDataBigBand.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/fastx/DNAIndexMetaDataBigBand.cpp -fPIC -DPIC -o libmaus2/fastx/.libs/la-DNAIndexMetaDataBigBand.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/fastx/DNAIndexMetaDataBigBand.cpp -o libmaus2/fastx/la-DNAIndexMetaDataBigBand.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/fastx/la-DNAIndexMetaDataBigBandBiDir.lo `test -f 'libmaus2/fastx/DNAIndexMetaDataBigBandBiDir.cpp' || echo './'`libmaus2/fastx/DNAIndexMetaDataBigBandBiDir.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/fastx/DNAIndexMetaDataBigBandBiDir.cpp -fPIC -DPIC -o libmaus2/fastx/.libs/la-DNAIndexMetaDataBigBandBiDir.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/fastx/DNAIndexMetaDataBigBandBiDir.cpp -o libmaus2/fastx/la-DNAIndexMetaDataBigBandBiDir.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/rank/la-DNARankBiDirRange.lo `test -f 'libmaus2/rank/DNARankBiDirRange.cpp' || echo './'`libmaus2/rank/DNARankBiDirRange.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/rank/DNARankBiDirRange.cpp -fPIC -DPIC -o libmaus2/rank/.libs/la-DNARankBiDirRange.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/rank/DNARankBiDirRange.cpp -o libmaus2/rank/la-DNARankBiDirRange.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/lcs/la-NNPTraceElement.lo `test -f 'libmaus2/lcs/NNPTraceElement.cpp' || echo './'`libmaus2/lcs/NNPTraceElement.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lcs/NNPTraceElement.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/la-NNPTraceElement.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lcs/NNPTraceElement.cpp -o libmaus2/lcs/la-NNPTraceElement.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/lcs/la-NNPTraceContainer.lo `test -f 'libmaus2/lcs/NNPTraceContainer.cpp' || echo './'`libmaus2/lcs/NNPTraceContainer.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lcs/NNPTraceContainer.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/la-NNPTraceContainer.o In file included from ./libmaus2/lcs/NNPTraceContainer.hpp:23, from libmaus2/lcs/NNPTraceContainer.cpp:18: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lcs/NNPTraceContainer.cpp -o libmaus2/lcs/la-NNPTraceContainer.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/lcs/la-NNPAlignResult.lo `test -f 'libmaus2/lcs/NNPAlignResult.cpp' || echo './'`libmaus2/lcs/NNPAlignResult.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lcs/NNPAlignResult.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/la-NNPAlignResult.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lcs/NNPAlignResult.cpp -o libmaus2/lcs/la-NNPAlignResult.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/suffixsort/bwtb3m/la-MergeStrategyMergeGapRequest.lo `test -f 'libmaus2/suffixsort/bwtb3m/MergeStrategyMergeGapRequest.cpp' || echo './'`libmaus2/suffixsort/bwtb3m/MergeStrategyMergeGapRequest.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/MergeStrategyMergeGapRequest.cpp -fPIC -DPIC -o libmaus2/suffixsort/bwtb3m/.libs/la-MergeStrategyMergeGapRequest.o In file included from ./libmaus2/suffixsort/BwtMergeTempFileNameSet.hpp:27, from ./libmaus2/suffixsort/BwtMergeBlockSortResult.hpp:22, from ./libmaus2/suffixsort/bwtb3m/MergeStrategyBlock.hpp:23, from ./libmaus2/suffixsort/bwtb3m/MergeStrategyMergeGapRequest.hpp:23, from libmaus2/suffixsort/bwtb3m/MergeStrategyMergeGapRequest.cpp:18: ./libmaus2/util/DirectoryStructure.hpp: In member function ‘std::string libmaus2::util::DirectoryStructure::printGenerate(std::ostream&, std::string, uint64_t) const’: ./libmaus2/util/DirectoryStructure.hpp:207:58: warning: variable ‘batchcnt’ set but not used [-Wunused-but-set-variable=] 207 | uint64_t batchcnt = 0; | ^~~~~~~~ ./libmaus2/util/DirectoryStructure.hpp: In member function ‘std::string libmaus2::util::DirectoryStructure::printRemove(std::ostream&, std::string, uint64_t) const’: ./libmaus2/util/DirectoryStructure.hpp:282:58: warning: variable ‘batchcnt’ set but not used [-Wunused-but-set-variable=] 282 | uint64_t batchcnt = 0; | ^~~~~~~~ libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/MergeStrategyMergeGapRequest.cpp -o libmaus2/suffixsort/bwtb3m/la-MergeStrategyMergeGapRequest.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/suffixsort/bwtb3m/la-BwtMergeSort.lo `test -f 'libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp' || echo './'`libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp -fPIC -DPIC -o libmaus2/suffixsort/bwtb3m/.libs/la-BwtMergeSort.o In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/util/IntervalTree.hpp:25, from ./libmaus2/gamma/GammaRLDecoder.hpp:28, from ./libmaus2/gamma/GammaRLEncoder.hpp:29, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:24, from ./libmaus2/suffixsort/bwtb3m/BwtMergeComputeSampledSA.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/suffixsort/bwtb3m/GapArrayWrapper.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeIsaParallelBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:24: ./libmaus2/util/AtomicArray.hpp: At global scope: ./libmaus2/util/AtomicArray.hpp:45:43: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 45 | AtomicArray(AtomicArray const & O) = delete; | ^~~~~~~~~~~~~~~~~ ./libmaus2/util/AtomicArray.hpp:45:43: note: remove the ‘< >’ In file included from ./libmaus2/suffixsort/bwtb3m/BwtMergeIsaParallelBase.hpp:24: ./libmaus2/suffixsort/GapArrayByte.hpp: In member function ‘void libmaus2::suffixsort::GapArrayByte::flush()’: ./libmaus2/suffixsort/GapArrayByte.hpp:134:42: warning: variable ‘overflowcnt’ set but not used [-Wunused-but-set-variable=] 134 | uint64_t overflowcnt = 0; | ^~~~~~~~~~~ In file included from ./libmaus2/suffixsort/BwtMergeTempFileNameSet.hpp:27, from ./libmaus2/suffixsort/BwtMergeBlockSortResult.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:33: ./libmaus2/util/DirectoryStructure.hpp: In member function ‘std::string libmaus2::util::DirectoryStructure::printGenerate(std::ostream&, std::string, uint64_t) const’: ./libmaus2/util/DirectoryStructure.hpp:207:58: warning: variable ‘batchcnt’ set but not used [-Wunused-but-set-variable=] 207 | uint64_t batchcnt = 0; | ^~~~~~~~ ./libmaus2/util/DirectoryStructure.hpp: In member function ‘std::string libmaus2::util::DirectoryStructure::printRemove(std::ostream&, std::string, uint64_t) const’: ./libmaus2/util/DirectoryStructure.hpp:282:58: warning: variable ‘batchcnt’ set but not used [-Wunused-but-set-variable=] 282 | uint64_t batchcnt = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:183, from ./libmaus2/huffman/CanonicalEncoder.hpp:26, from ./libmaus2/huffman/RLEncoder.hpp:25, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22: ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 2]’: ./libmaus2/huffman/HuffmanSorting.hpp:860:55: required from here 860 | huffman::EncodeTable enctable ( root ); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:188: ./libmaus2/huffman/HuffmanSorting.hpp: In instantiation of ‘static void libmaus2::huffman::HuffmanSorting::uncompressHuffmanCoded(uint64_t*, uint64_t, uint64_t, uint64_t, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::HuffmanTreeNode*, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::EncodeTable&) [with unsigned int lookupwords = 2; uint64_t = long unsigned int]’: ./libmaus2/huffman/HuffmanSorting.hpp:1091:27: required from here 1091 | uncompressHuffmanCoded(acode.get(), 0 /* bit offset */, lowhalf /* syms */, firsthighsym, enctable,dectable,root.get(),dectable0,dectable1,enctable0,enctable1); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/huffman/HuffmanSorting.hpp:534:42: warning: variable ‘alldecoffset’ set but not used [-Wunused-but-set-variable=] 534 | uint64_t alldecoffset = highdecoffset; | ^~~~~~~~~~~~ ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 1]’: ./libmaus2/huffman/CanonicalEncoder.hpp:219:116: required from here 219 | return ::libmaus2::huffman::EncodeTable<1>::unique_ptr_type(new ::libmaus2::huffman::EncodeTable<1>(Ptree.get())); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/wavelet/RlToHwtBase.hpp:30, from ./libmaus2/wavelet/RlToHwtTermRequest.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:44: ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp: In instantiation of ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTree(libmaus2::autoarray::AutoArray&, const std::string&, const std::string&, const libmaus2::huffman::HuffmanTree*, uint64_t) [with bool radixsort = true; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’: ./libmaus2/suffixsort/BwtMergeBlockSortRequest.hpp:862:90: required from ‘libmaus2::suffixsort::BwtMergeBlockSortResult libmaus2::suffixsort::BwtMergeBlockSortRequest::sortBlock(std::ostream*) const [with input_types_type = libmaus2::suffixsort::ByteInputTypes<32>; rl_encoder = libmaus2::huffman::RLEncoderTemplate, libmaus2::bitio::FastWriteBitWriterTemplate >, 128, 255, false> > >; std::ostream = std::basic_ostream]’ 862 | ::libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTree( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 863 | UT,tmpfilenames.getHWT(),tmpfileprefix,uhnode.get(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 864 | 1/* num threads */ | ~~~~~~~~~~~~~~~~~~ 865 | ); | ~ ./libmaus2/suffixsort/BwtMergeBlockSortRequest.hpp:979:79: required from ‘std::string libmaus2::suffixsort::BwtMergeBlockSortRequest::dispatch(std::ostream*) const [with rl_encoder = libmaus2::huffman::RLEncoderTemplate, libmaus2::bitio::FastWriteBitWriterTemplate >, 128, 255, false> > >; std::string = std::__cxx11::basic_string; std::ostream = std::basic_ostream]’ 979 | result = sortBlock,rl_encoder>(logstr); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BaseBlockSortThread.hpp:128:118: required from here 128 | block->sortresult = ::libmaus2::suffixsort::BwtMergeBlockSortResult::load(block->sortreq.dispatch(logstr)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:874:90: warning: variable ‘l_numsyms0’ set but not used [-Wunused-but-set-variable=] 874 | uint64_t l_numsyms0 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:879:90: warning: variable ‘r_numsyms1’ set but not used [-Wunused-but-set-variable=] 879 | uint64_t r_numsyms1 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:755:66: warning: variable ‘numsyms1’ set but not used [-Wunused-but-set-variable=] 755 | uint64_t numsyms1 = 0; | ^~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp: In instantiation of ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRl(const std::string&, const std::string&, const std::string&, const libmaus2::huffman::HuffmanTree&, uint64_t, uint64_t) [with rl_decoder = libmaus2::huffman::RLDecoder; bool radixsort = true; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1368:123: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwt(const std::string&, const std::string&, std::string, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’ 1368 | ::libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRl( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 1369 | bwt,hwt,tmpprefix,H, | ~~~~~~~~~~~~~~~~~~~~ 1370 | utf8WaveletMaxPartMem() /* part size maximum */, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1371 | utf8WaveletMaxThreads()); | ~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:4191:65: required from ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeBwt(const libmaus2::suffixsort::bwtb3m::BwtMergeSortOptions&, std::ostream*) [with input_types_type = libmaus2::suffixsort::ByteInputTypes<32>; std::ostream = std::basic_ostream]’ 4191 | libmaus2::wavelet::RlToHwtBase::rlToHwt(options.outfn, outhwt, options.tmpfilenamebase+"_finalhwttmp",options.numthreads) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:27:122: required from ‘libmaus2::suffixsort::bwtb3m::BwtMergeSortResult computeBwtTemplate(const libmaus2::suffixsort::bwtb3m::BwtMergeSortOptions&, std::ostream*) [with unsigned int wordsize = 32; std::ostream = std::basic_ostream]’ 27 | return libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate >::computeBwt(options,logstr); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:71:32: required from here 71 | return computeBwtTemplate<32>(options,logstr); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1419:90: warning: variable ‘l_numsyms0’ set but not used [-Wunused-but-set-variable=] 1419 | uint64_t l_numsyms0 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1424:90: warning: variable ‘r_numsyms1’ set but not used [-Wunused-but-set-variable=] 1424 | uint64_t r_numsyms1 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1299:66: warning: variable ‘numsyms1’ set but not used [-Wunused-but-set-variable=] 1299 | uint64_t numsyms1 = 0; | ^~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp: In instantiation of ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRlWithTerm(const std::vector >&, const std::string&, const std::string&, const libmaus2::huffman::HuffmanTree&, uint64_t, uint64_t, uint64_t, uint64_t) [with rl_decoder = libmaus2::huffman::RLDecoder; bool radixsort = true; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1500:131: required from ‘static void libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtTerm(const std::vector >&, const std::string&, std::string, libmaus2::huffman::HuffmanTree&, uint64_t, uint64_t, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’ 1500 | ::libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRlWithTerm( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 1501 | bwt,hwt,tmpprefix,H,p0r,bwtterm, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1502 | utf8WaveletMaxPartMem() /* maximum part size */, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1503 | utf8WaveletMaxThreads() | ~~~~~~~~~~~~~~~~~~~~~~~ 1504 | ); | ~ ./libmaus2/wavelet/RlToHwtBase.hpp:1687:17: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtTerm(const std::vector >&, const std::string&, std::string, std::string, uint64_t, uint64_t, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’ 1687 | rlToHwtTerm(bwt,hwt,tmpprefix,H,bwtterm,p0r,numthreads); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/wavelet/RlToHwtTermRequest.hpp:118:67: required from ‘libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtTermRequest::dispatch() [with rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >]’ 118 | libmaus2::wavelet::RlToHwtBase::rlToHwtTerm(bwt,hwt,tmpprefix,huftreefilename,bwtterm,p0r,numthreads) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:926:102: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::ensureWaveletTreeGenerated(const libmaus2::suffixsort::BwtMergeBlockSortResult&, std::ostream*) [with input_types_type = libmaus2::suffixsort::ByteInputTypes<32>; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::ostream = std::basic_ostream]’ 926 | libmaus2::wavelet::ImpCompactHuffmanWaveletTree::unique_ptr_type ptr(ureq->dispatch()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:997:105: required from ‘static libmaus2::suffixsort::bwtb3m::GapArrayComputationResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeGapArray(libmaus2::util::TempFileNameGenerator&, const std::string&, uint64_t, uint64_t, uint64_t, uint64_t, uint64_t, const libmaus2::suffixsort::BwtMergeBlockSortResult&, const std::vector >&, libmaus2::lf::DArray*, const std::vector&, uint64_t, std::ostream*, int) [with input_types_type = libmaus2::suffixsort::ByteInputTypes<32>; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int; std::ostream = std::basic_ostream]’ 997 | ::libmaus2::wavelet::ImpCompactHuffmanWaveletTree::unique_ptr_type ICHWL(ensureWaveletTreeGenerated(blockresults,logstr)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:1161:28: required from ‘static libmaus2::suffixsort::bwtb3m::GapArrayComputationResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeGapArray(libmaus2::util::TempFileNameGenerator&, const std::string&, uint64_t, const libmaus2::suffixsort::bwtb3m::MergeStrategyMergeGapRequest&, const std::vector >&, libmaus2::lf::DArray*, uint64_t, std::ostream*, int) [with input_types_type = libmaus2::suffixsort::ByteInputTypes<32>; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int; std::ostream = std::basic_ostream]’ 1161 | return computeGapArray(gtmpgen,fn,fs,blockstart,cblocksize,nextblockstart,mergeprocrightend, | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1162 | blockresults,mergedgtname,accD,zblocks,numthreads,logstr,verbose); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:1960:61: required from ‘static void libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::mergeBlocks(libmaus2::util::TempFileNameGenerator&, libmaus2::suffixsort::bwtb3m::MergeStrategyMergeInternalBlock&, std::string, uint64_t, uint64_t, uint64_t, uint64_t, const std::map&, uint64_t, const std::string&, std::ostream*, int) [with input_types_type = libmaus2::suffixsort::ByteInputTypes<32>; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int; std::ostream = std::basic_ostream]’ 1960 | GapArrayComputationResult const GACR = computeGapArray( | ~~~~~~~~~~~~~~~^ 1961 | gtmpgen, | ~~~~~~~~ 1962 | fn,fs,*(mergereq.gaprequests[0]), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1963 | mergereq.children[1]->sortresult.getFiles().getGT(), // previous gt files | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1964 | // tmpfilenamebase + "_gparts", // new gt files | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1965 | accD.get(), | ~~~~~~~~~~~ 1966 | numthreads, | ~~~~~~~~~~~ 1967 | logstr, | ~~~~~~~ 1968 | verbose | ~~~~~~~ 1969 | ); | ~ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:4049:19: required from ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeBwt(const libmaus2::suffixsort::bwtb3m::BwtMergeSortOptions&, std::ostream*) [with input_types_type = libmaus2::suffixsort::ByteInputTypes<32>; std::ostream = std::basic_ostream]’ 4049 | mergeBlocks( | ~~~~~~~~~~~^ 4050 | *gtmpgen, | ~~~~~~~~~ 4051 | *(dynamic_cast(p)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 4052 | fn,state.getFS(), | ~~~~~~~~~~~~~~~~~ 4053 | rlencoderblocksize, | ~~~~~~~~~~~~~~~~~~~ 4054 | lfblockmult, | ~~~~~~~~~~~~ 4055 | options.numthreads, | ~~~~~~~~~~~~~~~~~~~ 4056 | chist,bwtterm, | ~~~~~~~~~~~~~~ 4057 | huftreefilename, | ~~~~~~~~~~~~~~~~ 4058 | logstr, | ~~~~~~~ 4059 | options.verbose | ~~~~~~~~~~~~~~~ 4060 | ); | ~ libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:27:122: required from ‘libmaus2::suffixsort::bwtb3m::BwtMergeSortResult computeBwtTemplate(const libmaus2::suffixsort::bwtb3m::BwtMergeSortOptions&, std::ostream*) [with unsigned int wordsize = 32; std::ostream = std::basic_ostream]’ 27 | return libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate >::computeBwt(options,logstr); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:71:32: required from here 71 | return computeBwtTemplate<32>(options,logstr); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:2048:90: warning: variable ‘l_numsyms0’ set but not used [-Wunused-but-set-variable=] 2048 | uint64_t l_numsyms0 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:2053:90: warning: variable ‘r_numsyms1’ set but not used [-Wunused-but-set-variable=] 2053 | uint64_t r_numsyms1 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1929:66: warning: variable ‘numsyms1’ set but not used [-Wunused-but-set-variable=] 1929 | uint64_t numsyms1 = 0; | ^~~~~~~~ libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp -o libmaus2/suffixsort/bwtb3m/la-BwtMergeSort.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/suffixsort/bwtb3m/la-BwtComputeSSA.lo `test -f 'libmaus2/suffixsort/bwtb3m/BwtComputeSSA.cpp' || echo './'`libmaus2/suffixsort/bwtb3m/BwtComputeSSA.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtComputeSSA.cpp -fPIC -DPIC -o libmaus2/suffixsort/bwtb3m/.libs/la-BwtComputeSSA.o libmaus2/suffixsort/bwtb3m/BwtComputeSSA.cpp: In static member function ‘static void libmaus2::suffixsort::bwtb3m::BwtComputeSSA::computeSSA(std::string, uint64_t, uint64_t, std::string, bool, uint64_t, uint64_t, uint64_t, std::ostream*, std::string, std::string)’: libmaus2/suffixsort/bwtb3m/BwtComputeSSA.cpp:576:26: warning: variable ‘bc’ set but not used [-Wunused-but-set-variable=] 576 | uint64_t bc = 0; | ^~ In file included from ./libmaus2/huffman/huffman.hpp:183, from ./libmaus2/huffman/CanonicalEncoder.hpp:26, from ./libmaus2/huffman/RLDecoder.hpp:27, from ./libmaus2/suffixsort/bwtb3m/BwtComputeSSA.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtComputeSSA.cpp:18: ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 2]’: ./libmaus2/huffman/HuffmanSorting.hpp:860:55: required from here 860 | huffman::EncodeTable enctable ( root ); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:188: ./libmaus2/huffman/HuffmanSorting.hpp: In instantiation of ‘static void libmaus2::huffman::HuffmanSorting::uncompressHuffmanCoded(uint64_t*, uint64_t, uint64_t, uint64_t, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::HuffmanTreeNode*, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::EncodeTable&) [with unsigned int lookupwords = 2; uint64_t = long unsigned int]’: ./libmaus2/huffman/HuffmanSorting.hpp:1091:27: required from here 1091 | uncompressHuffmanCoded(acode.get(), 0 /* bit offset */, lowhalf /* syms */, firsthighsym, enctable,dectable,root.get(),dectable0,dectable1,enctable0,enctable1); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/huffman/HuffmanSorting.hpp:534:42: warning: variable ‘alldecoffset’ set but not used [-Wunused-but-set-variable=] 534 | uint64_t alldecoffset = highdecoffset; | ^~~~~~~~~~~~ ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 1]’: ./libmaus2/huffman/CanonicalEncoder.hpp:219:116: required from here 219 | return ::libmaus2::huffman::EncodeTable<1>::unique_ptr_type(new ::libmaus2::huffman::EncodeTable<1>(Ptree.get())); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtComputeSSA.cpp -o libmaus2/suffixsort/bwtb3m/la-BwtComputeSSA.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/fastx/la-FastAToCompact4BigBand.lo `test -f 'libmaus2/fastx/FastAToCompact4BigBand.cpp' || echo './'`libmaus2/fastx/FastAToCompact4BigBand.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/fastx/FastAToCompact4BigBand.cpp -fPIC -DPIC -o libmaus2/fastx/.libs/la-FastAToCompact4BigBand.o In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/util/IntervalTree.hpp:25, from ./libmaus2/fastx/FastInterval.hpp:25, from ./libmaus2/fastx/FastAReader.hpp:31, from ./libmaus2/fastx/StreamFastAReader.hpp:23, from libmaus2/fastx/FastAToCompact4BigBand.cpp:23: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/fastx/FastAToCompact4BigBand.cpp -o libmaus2/fastx/la-FastAToCompact4BigBand.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/suffixsort/bwtb3m/la-BwtMergeSortResult.lo `test -f 'libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.cpp' || echo './'`libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.cpp -fPIC -DPIC -o libmaus2/suffixsort/bwtb3m/.libs/la-BwtMergeSortResult.o In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/huffman/HuffmanTree.hpp:25, from ./libmaus2/wavelet/ImpCompactHuffmanWaveletTree.hpp:26, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.cpp:18: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/huffman/huffman.hpp:183, from ./libmaus2/huffman/CanonicalEncoder.hpp:26, from ./libmaus2/huffman/RLEncoder.hpp:25, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.hpp:25: ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 2]’: ./libmaus2/huffman/HuffmanSorting.hpp:860:55: required from here 860 | huffman::EncodeTable enctable ( root ); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:188: ./libmaus2/huffman/HuffmanSorting.hpp: In instantiation of ‘static void libmaus2::huffman::HuffmanSorting::uncompressHuffmanCoded(uint64_t*, uint64_t, uint64_t, uint64_t, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::HuffmanTreeNode*, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::EncodeTable&) [with unsigned int lookupwords = 2; uint64_t = long unsigned int]’: ./libmaus2/huffman/HuffmanSorting.hpp:1091:27: required from here 1091 | uncompressHuffmanCoded(acode.get(), 0 /* bit offset */, lowhalf /* syms */, firsthighsym, enctable,dectable,root.get(),dectable0,dectable1,enctable0,enctable1); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/huffman/HuffmanSorting.hpp:534:42: warning: variable ‘alldecoffset’ set but not used [-Wunused-but-set-variable=] 534 | uint64_t alldecoffset = highdecoffset; | ^~~~~~~~~~~~ ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 1]’: ./libmaus2/huffman/CanonicalEncoder.hpp:219:116: required from here 219 | return ::libmaus2::huffman::EncodeTable<1>::unique_ptr_type(new ::libmaus2::huffman::EncodeTable<1>(Ptree.get())); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/wavelet/RlToHwtBase.hpp:30, from libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.cpp:19: ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp: In instantiation of ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRl(const std::string&, const std::string&, const std::string&, const libmaus2::huffman::HuffmanTree&, uint64_t, uint64_t) [with rl_decoder = libmaus2::huffman::RLDecoder; bool radixsort = true; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1368:123: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwt(const std::string&, const std::string&, std::string, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’ 1368 | ::libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRl( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 1369 | bwt,hwt,tmpprefix,H, | ~~~~~~~~~~~~~~~~~~~~ 1370 | utf8WaveletMaxPartMem() /* part size maximum */, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1371 | utf8WaveletMaxThreads()); | ~~~~~~~~~~~~~~~~~~~~~~~~ libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.cpp:136:60: required from here 136 | libmaus2::wavelet::RlToHwtBase::rlToHwt(bwtfn, outhwt, tmpfilenamebase+"_finalhwttmp",numthreads) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1419:90: warning: variable ‘l_numsyms0’ set but not used [-Wunused-but-set-variable=] 1419 | uint64_t l_numsyms0 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1424:90: warning: variable ‘r_numsyms1’ set but not used [-Wunused-but-set-variable=] 1424 | uint64_t r_numsyms1 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1299:66: warning: variable ‘numsyms1’ set but not used [-Wunused-but-set-variable=] 1299 | uint64_t numsyms1 = 0; | ^~~~~~~~ libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.cpp -o libmaus2/suffixsort/bwtb3m/la-BwtMergeSortResult.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/lz/la-ZlibInterface.lo `test -f 'libmaus2/lz/ZlibInterface.cpp' || echo './'`libmaus2/lz/ZlibInterface.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lz/ZlibInterface.cpp -fPIC -DPIC -o libmaus2/lz/.libs/la-ZlibInterface.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lz/ZlibInterface.cpp -o libmaus2/lz/la-ZlibInterface.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/suffixsort/bwtb3m/la-BwtSelectSSA.lo `test -f 'libmaus2/suffixsort/bwtb3m/BwtSelectSSA.cpp' || echo './'`libmaus2/suffixsort/bwtb3m/BwtSelectSSA.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtSelectSSA.cpp -fPIC -DPIC -o libmaus2/suffixsort/bwtb3m/.libs/la-BwtSelectSSA.o In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/util/IntervalTree.hpp:25, from ./libmaus2/aio/FileFragment.hpp:27, from ./libmaus2/sorting/PairFileSorting.hpp:27, from libmaus2/suffixsort/bwtb3m/BwtSelectSSA.cpp:21: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ libmaus2/suffixsort/bwtb3m/BwtSelectSSA.cpp: In static member function ‘static void libmaus2::suffixsort::bwtb3m::BwtSelectSSA::computeSSA(std::vector >, const std::string&, const std::string&, const std::string&, const std::vector >&, std::string, bool, uint64_t, uint64_t, uint64_t, uint64_t, std::ostream*)’: libmaus2/suffixsort/bwtb3m/BwtSelectSSA.cpp:639:26: warning: variable ‘bc’ set but not used [-Wunused-but-set-variable=] 639 | uint64_t bc = 0; | ^~ In file included from ./libmaus2/huffman/huffman.hpp:183, from ./libmaus2/huffman/CanonicalEncoder.hpp:26, from ./libmaus2/huffman/RLDecoder.hpp:27, from ./libmaus2/suffixsort/bwtb3m/BwtSelectSSA.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtSelectSSA.cpp:18: ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 2]’: ./libmaus2/huffman/HuffmanSorting.hpp:860:55: required from here 860 | huffman::EncodeTable enctable ( root ); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:188: ./libmaus2/huffman/HuffmanSorting.hpp: In instantiation of ‘static void libmaus2::huffman::HuffmanSorting::uncompressHuffmanCoded(uint64_t*, uint64_t, uint64_t, uint64_t, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::HuffmanTreeNode*, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::EncodeTable&) [with unsigned int lookupwords = 2; uint64_t = long unsigned int]’: ./libmaus2/huffman/HuffmanSorting.hpp:1091:27: required from here 1091 | uncompressHuffmanCoded(acode.get(), 0 /* bit offset */, lowhalf /* syms */, firsthighsym, enctable,dectable,root.get(),dectable0,dectable1,enctable0,enctable1); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/huffman/HuffmanSorting.hpp:534:42: warning: variable ‘alldecoffset’ set but not used [-Wunused-but-set-variable=] 534 | uint64_t alldecoffset = highdecoffset; | ^~~~~~~~~~~~ ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 1]’: ./libmaus2/huffman/CanonicalEncoder.hpp:219:116: required from here 219 | return ::libmaus2::huffman::EncodeTable<1>::unique_ptr_type(new ::libmaus2::huffman::EncodeTable<1>(Ptree.get())); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtSelectSSA.cpp -o libmaus2/suffixsort/bwtb3m/la-BwtSelectSSA.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/aio/la-FileRemoval.lo `test -f 'libmaus2/aio/FileRemoval.cpp' || echo './'`libmaus2/aio/FileRemoval.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/aio/FileRemoval.cpp -fPIC -DPIC -o libmaus2/aio/.libs/la-FileRemoval.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/aio/FileRemoval.cpp -o libmaus2/aio/la-FileRemoval.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/rank/la-DNARankMEM.lo `test -f 'libmaus2/rank/DNARankMEM.cpp' || echo './'`libmaus2/rank/DNARankMEM.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/rank/DNARankMEM.cpp -fPIC -DPIC -o libmaus2/rank/.libs/la-DNARankMEM.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/rank/DNARankMEM.cpp -o libmaus2/rank/la-DNARankMEM.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/lcs/la-ChainAddQueueElement.lo `test -f 'libmaus2/lcs/ChainAddQueueElement.cpp' || echo './'`libmaus2/lcs/ChainAddQueueElement.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lcs/ChainAddQueueElement.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/la-ChainAddQueueElement.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lcs/ChainAddQueueElement.cpp -o libmaus2/lcs/la-ChainAddQueueElement.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/lcs/la-Chain.lo `test -f 'libmaus2/lcs/Chain.cpp' || echo './'`libmaus2/lcs/Chain.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lcs/Chain.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/la-Chain.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lcs/Chain.cpp -o libmaus2/lcs/la-Chain.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/lcs/la-ChainNode.lo `test -f 'libmaus2/lcs/ChainNode.cpp' || echo './'`libmaus2/lcs/ChainNode.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lcs/ChainNode.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/la-ChainNode.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lcs/ChainNode.cpp -o libmaus2/lcs/la-ChainNode.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/lcs/la-ChainNodeInfo.lo `test -f 'libmaus2/lcs/ChainNodeInfo.cpp' || echo './'`libmaus2/lcs/ChainNodeInfo.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lcs/ChainNodeInfo.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/la-ChainNodeInfo.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lcs/ChainNodeInfo.cpp -o libmaus2/lcs/la-ChainNodeInfo.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/lcs/la-ChainRemoveQueueElement.lo `test -f 'libmaus2/lcs/ChainRemoveQueueElement.cpp' || echo './'`libmaus2/lcs/ChainRemoveQueueElement.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lcs/ChainRemoveQueueElement.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/la-ChainRemoveQueueElement.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lcs/ChainRemoveQueueElement.cpp -o libmaus2/lcs/la-ChainRemoveQueueElement.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/lcs/la-ChainSplayTreeNode.lo `test -f 'libmaus2/lcs/ChainSplayTreeNode.cpp' || echo './'`libmaus2/lcs/ChainSplayTreeNode.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lcs/ChainSplayTreeNode.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/la-ChainSplayTreeNode.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lcs/ChainSplayTreeNode.cpp -o libmaus2/lcs/la-ChainSplayTreeNode.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/timing/la-RealTimeClock.lo `test -f 'libmaus2/timing/RealTimeClock.cpp' || echo './'`libmaus2/timing/RealTimeClock.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/timing/RealTimeClock.cpp -fPIC -DPIC -o libmaus2/timing/.libs/la-RealTimeClock.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/timing/RealTimeClock.cpp -o libmaus2/timing/la-RealTimeClock.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/aio/la-PosixFdOutputStreamFactory.lo `test -f 'libmaus2/aio/PosixFdOutputStreamFactory.cpp' || echo './'`libmaus2/aio/PosixFdOutputStreamFactory.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/aio/PosixFdOutputStreamFactory.cpp -fPIC -DPIC -o libmaus2/aio/.libs/la-PosixFdOutputStreamFactory.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/aio/PosixFdOutputStreamFactory.cpp -o libmaus2/aio/la-PosixFdOutputStreamFactory.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/dazzler/align/la-OverlapHeader.lo `test -f 'libmaus2/dazzler/align/OverlapHeader.cpp' || echo './'`libmaus2/dazzler/align/OverlapHeader.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/dazzler/align/OverlapHeader.cpp -fPIC -DPIC -o libmaus2/dazzler/align/.libs/la-OverlapHeader.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/dazzler/align/OverlapHeader.cpp -o libmaus2/dazzler/align/la-OverlapHeader.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/bambam/la-BamAlignment.lo `test -f 'libmaus2/bambam/BamAlignment.cpp' || echo './'`libmaus2/bambam/BamAlignment.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/BamAlignment.cpp -fPIC -DPIC -o libmaus2/bambam/.libs/la-BamAlignment.o In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/bambam/BamAuxFilterVector.hpp:22, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:27, from ./libmaus2/bambam/BamAlignment.hpp:24, from libmaus2/bambam/BamAlignment.cpp:18: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/bambam/CigarStringParser.hpp:25, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ libmaus2/bambam/BamAlignment.cpp: In member function ‘std::string libmaus2::bambam::BamAlignment::getReferenceRegionViaMd() const’: libmaus2/bambam/BamAlignment.cpp:98:17: warning: variable ‘refpos’ set but not used [-Wunused-but-set-variable=] 98 | int64_t refpos = 0; | ^~~~~~ libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/BamAlignment.cpp -o libmaus2/bambam/la-BamAlignment.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/suffixsort/bwtb3m/la-MergeStrategyMergeInput.lo `test -f 'libmaus2/suffixsort/bwtb3m/MergeStrategyMergeInput.cpp' || echo './'`libmaus2/suffixsort/bwtb3m/MergeStrategyMergeInput.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/MergeStrategyMergeInput.cpp -fPIC -DPIC -o libmaus2/suffixsort/bwtb3m/.libs/la-MergeStrategyMergeInput.o In file included from ./libmaus2/suffixsort/BwtMergeTempFileNameSet.hpp:27, from ./libmaus2/suffixsort/BwtMergeBlockSortResult.hpp:22, from ./libmaus2/suffixsort/bwtb3m/MergeStrategyBlock.hpp:23, from ./libmaus2/suffixsort/bwtb3m/MergeStrategyMergeInput.hpp:21, from libmaus2/suffixsort/bwtb3m/MergeStrategyMergeInput.cpp:18: ./libmaus2/util/DirectoryStructure.hpp: In member function ‘std::string libmaus2::util::DirectoryStructure::printGenerate(std::ostream&, std::string, uint64_t) const’: ./libmaus2/util/DirectoryStructure.hpp:207:58: warning: variable ‘batchcnt’ set but not used [-Wunused-but-set-variable=] 207 | uint64_t batchcnt = 0; | ^~~~~~~~ ./libmaus2/util/DirectoryStructure.hpp: In member function ‘std::string libmaus2::util::DirectoryStructure::printRemove(std::ostream&, std::string, uint64_t) const’: ./libmaus2/util/DirectoryStructure.hpp:282:58: warning: variable ‘batchcnt’ set but not used [-Wunused-but-set-variable=] 282 | uint64_t batchcnt = 0; | ^~~~~~~~ In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/huffman/HuffmanTree.hpp:25, from ./libmaus2/suffixsort/BwtMergeBlockSortRequest.hpp:23, from ./libmaus2/suffixsort/bwtb3m/MergeStrategyBaseBlock.hpp:22, from libmaus2/suffixsort/bwtb3m/MergeStrategyMergeInput.cpp:22: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/huffman/huffman.hpp:183, from ./libmaus2/suffixsort/BwtMergeBlockSortRequest.hpp:24: ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 2]’: ./libmaus2/huffman/HuffmanSorting.hpp:860:55: required from here 860 | huffman::EncodeTable enctable ( root ); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:188: ./libmaus2/huffman/HuffmanSorting.hpp: In instantiation of ‘static void libmaus2::huffman::HuffmanSorting::uncompressHuffmanCoded(uint64_t*, uint64_t, uint64_t, uint64_t, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::HuffmanTreeNode*, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::EncodeTable&) [with unsigned int lookupwords = 2; uint64_t = long unsigned int]’: ./libmaus2/huffman/HuffmanSorting.hpp:1091:27: required from here 1091 | uncompressHuffmanCoded(acode.get(), 0 /* bit offset */, lowhalf /* syms */, firsthighsym, enctable,dectable,root.get(),dectable0,dectable1,enctable0,enctable1); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/huffman/HuffmanSorting.hpp:534:42: warning: variable ‘alldecoffset’ set but not used [-Wunused-but-set-variable=] 534 | uint64_t alldecoffset = highdecoffset; | ^~~~~~~~~~~~ ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 1]’: ./libmaus2/huffman/CanonicalEncoder.hpp:219:116: required from here 219 | return ::libmaus2::huffman::EncodeTable<1>::unique_ptr_type(new ::libmaus2::huffman::EncodeTable<1>(Ptree.get())); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/MergeStrategyMergeInput.cpp -o libmaus2/suffixsort/bwtb3m/la-MergeStrategyMergeInput.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/aio/la-InputOutputStreamInstance.lo `test -f 'libmaus2/aio/InputOutputStreamInstance.cpp' || echo './'`libmaus2/aio/InputOutputStreamInstance.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/aio/InputOutputStreamInstance.cpp -fPIC -DPIC -o libmaus2/aio/.libs/la-InputOutputStreamInstance.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/aio/InputOutputStreamInstance.cpp -o libmaus2/aio/la-InputOutputStreamInstance.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/dazzler/align/la-OverlapInfo.lo `test -f 'libmaus2/dazzler/align/OverlapInfo.cpp' || echo './'`libmaus2/dazzler/align/OverlapInfo.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/dazzler/align/OverlapInfo.cpp -fPIC -DPIC -o libmaus2/dazzler/align/.libs/la-OverlapInfo.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/dazzler/align/OverlapInfo.cpp -o libmaus2/dazzler/align/la-OverlapInfo.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/dazzler/align/la-OverlapDataInterface.lo `test -f 'libmaus2/dazzler/align/OverlapDataInterface.cpp' || echo './'`libmaus2/dazzler/align/OverlapDataInterface.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/dazzler/align/OverlapDataInterface.cpp -fPIC -DPIC -o libmaus2/dazzler/align/.libs/la-OverlapDataInterface.o In file included from ./libmaus2/lcs/Aligner.hpp:21, from ./libmaus2/dazzler/align/Overlap.hpp:22, from ./libmaus2/dazzler/align/OverlapData.hpp:23, from ./libmaus2/dazzler/align/OverlapDataInterface.hpp:21, from libmaus2/dazzler/align/OverlapDataInterface.cpp:18: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/dazzler/align/OverlapDataInterface.cpp -o libmaus2/dazzler/align/la-OverlapDataInterface.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/util/la-PathTools.lo `test -f 'libmaus2/util/PathTools.cpp' || echo './'`libmaus2/util/PathTools.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/util/PathTools.cpp -fPIC -DPIC -o libmaus2/util/.libs/la-PathTools.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/util/PathTools.cpp -o libmaus2/util/la-PathTools.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/aio/la-OFStreamOutputStreamFactory.lo `test -f 'libmaus2/aio/OFStreamOutputStreamFactory.cpp' || echo './'`libmaus2/aio/OFStreamOutputStreamFactory.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/aio/OFStreamOutputStreamFactory.cpp -fPIC -DPIC -o libmaus2/aio/.libs/la-OFStreamOutputStreamFactory.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/aio/OFStreamOutputStreamFactory.cpp -o libmaus2/aio/la-OFStreamOutputStreamFactory.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/aio/la-PosixFdInput.lo `test -f 'libmaus2/aio/PosixFdInput.cpp' || echo './'`libmaus2/aio/PosixFdInput.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/aio/PosixFdInput.cpp -fPIC -DPIC -o libmaus2/aio/.libs/la-PosixFdInput.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/aio/PosixFdInput.cpp -o libmaus2/aio/la-PosixFdInput.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/lz/la-BgzfDeflateHeaderFunctions.lo `test -f 'libmaus2/lz/BgzfDeflateHeaderFunctions.cpp' || echo './'`libmaus2/lz/BgzfDeflateHeaderFunctions.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lz/BgzfDeflateHeaderFunctions.cpp -fPIC -DPIC -o libmaus2/lz/.libs/la-BgzfDeflateHeaderFunctions.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lz/BgzfDeflateHeaderFunctions.cpp -o libmaus2/lz/la-BgzfDeflateHeaderFunctions.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/lz/la-BgzfDeflateZStreamBase.lo `test -f 'libmaus2/lz/BgzfDeflateZStreamBase.cpp' || echo './'`libmaus2/lz/BgzfDeflateZStreamBase.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lz/BgzfDeflateZStreamBase.cpp -fPIC -DPIC -o libmaus2/lz/.libs/la-BgzfDeflateZStreamBase.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lz/BgzfDeflateZStreamBase.cpp -o libmaus2/lz/la-BgzfDeflateZStreamBase.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/gtf/la-CDS.lo `test -f 'libmaus2/gtf/CDS.cpp' || echo './'`libmaus2/gtf/CDS.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/gtf/CDS.cpp -fPIC -DPIC -o libmaus2/gtf/.libs/la-CDS.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/gtf/CDS.cpp -o libmaus2/gtf/la-CDS.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/gtf/la-Exon.lo `test -f 'libmaus2/gtf/Exon.cpp' || echo './'`libmaus2/gtf/Exon.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/gtf/Exon.cpp -fPIC -DPIC -o libmaus2/gtf/.libs/la-Exon.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/gtf/Exon.cpp -o libmaus2/gtf/la-Exon.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/gtf/la-ExonInfo.lo `test -f 'libmaus2/gtf/ExonInfo.cpp' || echo './'`libmaus2/gtf/ExonInfo.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/gtf/ExonInfo.cpp -fPIC -DPIC -o libmaus2/gtf/.libs/la-ExonInfo.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/gtf/ExonInfo.cpp -o libmaus2/gtf/la-ExonInfo.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/gtf/la-ExonInterval.lo `test -f 'libmaus2/gtf/ExonInterval.cpp' || echo './'`libmaus2/gtf/ExonInterval.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/gtf/ExonInterval.cpp -fPIC -DPIC -o libmaus2/gtf/.libs/la-ExonInterval.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/gtf/ExonInterval.cpp -o libmaus2/gtf/la-ExonInterval.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/gtf/la-ExonSubInfo.lo `test -f 'libmaus2/gtf/ExonSubInfo.cpp' || echo './'`libmaus2/gtf/ExonSubInfo.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/gtf/ExonSubInfo.cpp -fPIC -DPIC -o libmaus2/gtf/.libs/la-ExonSubInfo.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/gtf/ExonSubInfo.cpp -o libmaus2/gtf/la-ExonSubInfo.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/protein/la-Blosum62.lo `test -f 'libmaus2/protein/Blosum62.cpp' || echo './'`libmaus2/protein/Blosum62.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/protein/Blosum62.cpp -fPIC -DPIC -o libmaus2/protein/.libs/la-Blosum62.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/protein/Blosum62.cpp -o libmaus2/protein/la-Blosum62.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/protein/la-CodonMapper.lo `test -f 'libmaus2/protein/CodonMapper.cpp' || echo './'`libmaus2/protein/CodonMapper.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/protein/CodonMapper.cpp -fPIC -DPIC -o libmaus2/protein/.libs/la-CodonMapper.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/protein/CodonMapper.cpp -o libmaus2/protein/la-CodonMapper.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/bambam/la-ChecksumsFactory.lo `test -f 'libmaus2/bambam/ChecksumsFactory.cpp' || echo './'`libmaus2/bambam/ChecksumsFactory.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/ChecksumsFactory.cpp -fPIC -DPIC -o libmaus2/bambam/.libs/la-ChecksumsFactory.o In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/bambam/BamAuxFilterVector.hpp:22, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:27, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/ChecksumsInterface.hpp:22, from ./libmaus2/bambam/ChecksumsFactory.hpp:22, from libmaus2/bambam/ChecksumsFactory.cpp:20: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/bambam/CigarStringParser.hpp:25, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/ChecksumsFactory.cpp -o libmaus2/bambam/la-ChecksumsFactory.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/vcf/la-VCFSortEntry.lo `test -f 'libmaus2/vcf/VCFSortEntry.cpp' || echo './'`libmaus2/vcf/VCFSortEntry.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/vcf/VCFSortEntry.cpp -fPIC -DPIC -o libmaus2/vcf/.libs/la-VCFSortEntry.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/vcf/VCFSortEntry.cpp -o libmaus2/vcf/la-VCFSortEntry.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/network/la-CurlInitObject.lo `test -f 'libmaus2/network/CurlInitObject.cpp' || echo './'`libmaus2/network/CurlInitObject.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/network/CurlInitObject.cpp -fPIC -DPIC -o libmaus2/network/.libs/la-CurlInitObject.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/network/CurlInitObject.cpp -o libmaus2/network/la-CurlInitObject.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/network/la-CurlOutputBlock.lo `test -f 'libmaus2/network/CurlOutputBlock.cpp' || echo './'`libmaus2/network/CurlOutputBlock.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/network/CurlOutputBlock.cpp -fPIC -DPIC -o libmaus2/network/.libs/la-CurlOutputBlock.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/network/CurlOutputBlock.cpp -o libmaus2/network/la-CurlOutputBlock.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/network/la-CurlResponseAcceptor.lo `test -f 'libmaus2/network/CurlResponseAcceptor.cpp' || echo './'`libmaus2/network/CurlResponseAcceptor.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/network/CurlResponseAcceptor.cpp -fPIC -DPIC -o libmaus2/network/.libs/la-CurlResponseAcceptor.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/network/CurlResponseAcceptor.cpp -o libmaus2/network/la-CurlResponseAcceptor.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/network/la-HttpCurlResponseAcceptor.lo `test -f 'libmaus2/network/HttpCurlResponseAcceptor.cpp' || echo './'`libmaus2/network/HttpCurlResponseAcceptor.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/network/HttpCurlResponseAcceptor.cpp -fPIC -DPIC -o libmaus2/network/.libs/la-HttpCurlResponseAcceptor.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/network/HttpCurlResponseAcceptor.cpp -o libmaus2/network/la-HttpCurlResponseAcceptor.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/network/la-FtpCurlResponseAcceptor.lo `test -f 'libmaus2/network/FtpCurlResponseAcceptor.cpp' || echo './'`libmaus2/network/FtpCurlResponseAcceptor.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/network/FtpCurlResponseAcceptor.cpp -fPIC -DPIC -o libmaus2/network/.libs/la-FtpCurlResponseAcceptor.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/network/FtpCurlResponseAcceptor.cpp -o libmaus2/network/la-FtpCurlResponseAcceptor.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/network/la-CurlObject.lo `test -f 'libmaus2/network/CurlObject.cpp' || echo './'`libmaus2/network/CurlObject.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/network/CurlObject.cpp -fPIC -DPIC -o libmaus2/network/.libs/la-CurlObject.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/network/CurlObject.cpp -o libmaus2/network/la-CurlObject.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/network/la-CurlObjectReader.lo `test -f 'libmaus2/network/CurlObjectReader.cpp' || echo './'`libmaus2/network/CurlObjectReader.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/network/CurlObjectReader.cpp -fPIC -DPIC -o libmaus2/network/.libs/la-CurlObjectReader.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/network/CurlObjectReader.cpp -o libmaus2/network/la-CurlObjectReader.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/network/la-CurlObjectThreadCallable.lo `test -f 'libmaus2/network/CurlObjectThreadCallable.cpp' || echo './'`libmaus2/network/CurlObjectThreadCallable.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/network/CurlObjectThreadCallable.cpp -fPIC -DPIC -o libmaus2/network/.libs/la-CurlObjectThreadCallable.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/network/CurlObjectThreadCallable.cpp -o libmaus2/network/la-CurlObjectThreadCallable.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/network/la-CurlInputStreamBuffer.lo `test -f 'libmaus2/network/CurlInputStreamBuffer.cpp' || echo './'`libmaus2/network/CurlInputStreamBuffer.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/network/CurlInputStreamBuffer.cpp -fPIC -DPIC -o libmaus2/network/.libs/la-CurlInputStreamBuffer.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/network/CurlInputStreamBuffer.cpp -o libmaus2/network/la-CurlInputStreamBuffer.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/network/la-CurlInputStream.lo `test -f 'libmaus2/network/CurlInputStream.cpp' || echo './'`libmaus2/network/CurlInputStream.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/network/CurlInputStream.cpp -fPIC -DPIC -o libmaus2/network/.libs/la-CurlInputStream.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/network/CurlInputStream.cpp -o libmaus2/network/la-CurlInputStream.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/network/la-GetHostName.lo `test -f 'libmaus2/network/GetHostName.cpp' || echo './'`libmaus2/network/GetHostName.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/network/GetHostName.cpp -fPIC -DPIC -o libmaus2/network/.libs/la-GetHostName.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/network/GetHostName.cpp -o libmaus2/network/la-GetHostName.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/aio/la-SecrecyInputStreamFactory.lo `test -f 'libmaus2/aio/SecrecyInputStreamFactory.cpp' || echo './'`libmaus2/aio/SecrecyInputStreamFactory.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/aio/SecrecyInputStreamFactory.cpp -fPIC -DPIC -o libmaus2/aio/.libs/la-SecrecyInputStreamFactory.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/aio/SecrecyInputStreamFactory.cpp -o libmaus2/aio/la-SecrecyInputStreamFactory.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/aio/la-SecrecyOutputStreamFactory.lo `test -f 'libmaus2/aio/SecrecyOutputStreamFactory.cpp' || echo './'`libmaus2/aio/SecrecyOutputStreamFactory.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/aio/SecrecyOutputStreamFactory.cpp -fPIC -DPIC -o libmaus2/aio/.libs/la-SecrecyOutputStreamFactory.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/aio/SecrecyOutputStreamFactory.cpp -o libmaus2/aio/la-SecrecyOutputStreamFactory.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=compile powerpc64le-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/bambam/la-Scram.lo `test -f 'libmaus2/bambam/Scram.c' || echo './'`libmaus2/bambam/Scram.c libtool: compile: powerpc64le-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/Scram.c -fPIC -DPIC -o libmaus2/bambam/.libs/la-Scram.o libtool: compile: powerpc64le-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/Scram.c -o libmaus2/bambam/la-Scram.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/bambam/parallel/la-ScramCramEncoding.lo `test -f 'libmaus2/bambam/parallel/ScramCramEncoding.cpp' || echo './'`libmaus2/bambam/parallel/ScramCramEncoding.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/parallel/ScramCramEncoding.cpp -fPIC -DPIC -o libmaus2/bambam/parallel/.libs/la-ScramCramEncoding.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/parallel/ScramCramEncoding.cpp -o libmaus2/bambam/parallel/la-ScramCramEncoding.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/parallel/threadpool/bgzf/la-BgzfDecompressContext.lo `test -f 'libmaus2/parallel/threadpool/bgzf/BgzfDecompressContext.cpp' || echo './'`libmaus2/parallel/threadpool/bgzf/BgzfDecompressContext.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/parallel/threadpool/bgzf/BgzfDecompressContext.cpp -fPIC -DPIC -o libmaus2/parallel/threadpool/bgzf/.libs/la-BgzfDecompressContext.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/parallel/threadpool/bgzf/BgzfDecompressContext.cpp -o libmaus2/parallel/threadpool/bgzf/la-BgzfDecompressContext.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/parallel/threadpool/bgzf/la-BgzfCompressContext.lo `test -f 'libmaus2/parallel/threadpool/bgzf/BgzfCompressContext.cpp' || echo './'`libmaus2/parallel/threadpool/bgzf/BgzfCompressContext.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/parallel/threadpool/bgzf/BgzfCompressContext.cpp -fPIC -DPIC -o libmaus2/parallel/threadpool/bgzf/.libs/la-BgzfCompressContext.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/parallel/threadpool/bgzf/BgzfCompressContext.cpp -o libmaus2/parallel/threadpool/bgzf/la-BgzfCompressContext.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/suffixsort/bwtb3m/la-BwtMergeIsaBase.lo `test -f 'libmaus2/suffixsort/bwtb3m/BwtMergeIsaBase.cpp' || echo './'`libmaus2/suffixsort/bwtb3m/BwtMergeIsaBase.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtMergeIsaBase.cpp -fPIC -DPIC -o libmaus2/suffixsort/bwtb3m/.libs/la-BwtMergeIsaBase.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtMergeIsaBase.cpp -o libmaus2/suffixsort/bwtb3m/la-BwtMergeIsaBase.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/suffixsort/bwtb3m/la-BwtMergeIsaParallelBase.lo `test -f 'libmaus2/suffixsort/bwtb3m/BwtMergeIsaParallelBase.cpp' || echo './'`libmaus2/suffixsort/bwtb3m/BwtMergeIsaParallelBase.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtMergeIsaParallelBase.cpp -fPIC -DPIC -o libmaus2/suffixsort/bwtb3m/.libs/la-BwtMergeIsaParallelBase.o In file included from ./libmaus2/suffixsort/bwtb3m/GapArrayWrapper.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeIsaParallelBase.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeIsaParallelBase.cpp:19: ./libmaus2/util/AtomicArray.hpp:45:43: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 45 | AtomicArray(AtomicArray const & O) = delete; | ^~~~~~~~~~~~~~~~~ ./libmaus2/util/AtomicArray.hpp:45:43: note: remove the ‘< >’ In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/util/IntervalTree.hpp:25, from ./libmaus2/huffman/GapDecoder.hpp:26, from ./libmaus2/huffman/GapEncoder.hpp:25, from ./libmaus2/suffixsort/GapArrayByte.hpp:25, from ./libmaus2/suffixsort/bwtb3m/BwtMergeIsaParallelBase.hpp:24: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ ./libmaus2/suffixsort/GapArrayByte.hpp: In member function ‘void libmaus2::suffixsort::GapArrayByte::flush()’: ./libmaus2/suffixsort/GapArrayByte.hpp:134:42: warning: variable ‘overflowcnt’ set but not used [-Wunused-but-set-variable=] 134 | uint64_t overflowcnt = 0; | ^~~~~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:183, from ./libmaus2/huffman/CanonicalEncoder.hpp:26, from ./libmaus2/huffman/GapEncoder.hpp:23: ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 2]’: ./libmaus2/huffman/HuffmanSorting.hpp:860:55: required from here 860 | huffman::EncodeTable enctable ( root ); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:188: ./libmaus2/huffman/HuffmanSorting.hpp: In instantiation of ‘static void libmaus2::huffman::HuffmanSorting::uncompressHuffmanCoded(uint64_t*, uint64_t, uint64_t, uint64_t, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::HuffmanTreeNode*, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::EncodeTable&) [with unsigned int lookupwords = 2; uint64_t = long unsigned int]’: ./libmaus2/huffman/HuffmanSorting.hpp:1091:27: required from here 1091 | uncompressHuffmanCoded(acode.get(), 0 /* bit offset */, lowhalf /* syms */, firsthighsym, enctable,dectable,root.get(),dectable0,dectable1,enctable0,enctable1); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/huffman/HuffmanSorting.hpp:534:42: warning: variable ‘alldecoffset’ set but not used [-Wunused-but-set-variable=] 534 | uint64_t alldecoffset = highdecoffset; | ^~~~~~~~~~~~ ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 1]’: ./libmaus2/huffman/CanonicalEncoder.hpp:219:116: required from here 219 | return ::libmaus2::huffman::EncodeTable<1>::unique_ptr_type(new ::libmaus2::huffman::EncodeTable<1>(Ptree.get())); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtMergeIsaParallelBase.cpp -o libmaus2/suffixsort/bwtb3m/la-BwtMergeIsaParallelBase.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/suffixsort/bwtb3m/la-BwtMergeParallelGapFragMerge.lo `test -f 'libmaus2/suffixsort/bwtb3m/BwtMergeParallelGapFragMerge.cpp' || echo './'`libmaus2/suffixsort/bwtb3m/BwtMergeParallelGapFragMerge.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtMergeParallelGapFragMerge.cpp -fPIC -DPIC -o libmaus2/suffixsort/bwtb3m/.libs/la-BwtMergeParallelGapFragMerge.o In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/util/IntervalTree.hpp:25, from ./libmaus2/gamma/GammaRLDecoder.hpp:28, from ./libmaus2/gamma/GammaRLEncoder.hpp:29, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:24, from ./libmaus2/suffixsort/bwtb3m/BwtMergeParallelGapFragMerge.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeParallelGapFragMerge.cpp:19: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/huffman/huffman.hpp:183, from ./libmaus2/huffman/CanonicalEncoder.hpp:26, from ./libmaus2/huffman/RLEncoder.hpp:25, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22: ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 2]’: ./libmaus2/huffman/HuffmanSorting.hpp:860:55: required from here 860 | huffman::EncodeTable enctable ( root ); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:188: ./libmaus2/huffman/HuffmanSorting.hpp: In instantiation of ‘static void libmaus2::huffman::HuffmanSorting::uncompressHuffmanCoded(uint64_t*, uint64_t, uint64_t, uint64_t, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::HuffmanTreeNode*, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::EncodeTable&) [with unsigned int lookupwords = 2; uint64_t = long unsigned int]’: ./libmaus2/huffman/HuffmanSorting.hpp:1091:27: required from here 1091 | uncompressHuffmanCoded(acode.get(), 0 /* bit offset */, lowhalf /* syms */, firsthighsym, enctable,dectable,root.get(),dectable0,dectable1,enctable0,enctable1); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/huffman/HuffmanSorting.hpp:534:42: warning: variable ‘alldecoffset’ set but not used [-Wunused-but-set-variable=] 534 | uint64_t alldecoffset = highdecoffset; | ^~~~~~~~~~~~ ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 1]’: ./libmaus2/huffman/CanonicalEncoder.hpp:219:116: required from here 219 | return ::libmaus2::huffman::EncodeTable<1>::unique_ptr_type(new ::libmaus2::huffman::EncodeTable<1>(Ptree.get())); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtMergeParallelGapFragMerge.cpp -o libmaus2/suffixsort/bwtb3m/la-BwtMergeParallelGapFragMerge.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplateByte32.lo `test -f 'libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateByte32.cpp' || echo './'`libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateByte32.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateByte32.cpp -fPIC -DPIC -o libmaus2/suffixsort/bwtb3m/.libs/la-BwtMergeSortTemplateByte32.o In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/util/IntervalTree.hpp:25, from ./libmaus2/gamma/GammaRLDecoder.hpp:28, from ./libmaus2/gamma/GammaRLEncoder.hpp:29, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:24, from ./libmaus2/suffixsort/bwtb3m/BwtMergeComputeSampledSA.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateByte32.cpp:20: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/suffixsort/bwtb3m/GapArrayWrapper.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeIsaParallelBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:24: ./libmaus2/util/AtomicArray.hpp: At global scope: ./libmaus2/util/AtomicArray.hpp:45:43: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 45 | AtomicArray(AtomicArray const & O) = delete; | ^~~~~~~~~~~~~~~~~ ./libmaus2/util/AtomicArray.hpp:45:43: note: remove the ‘< >’ In file included from ./libmaus2/suffixsort/bwtb3m/BwtMergeIsaParallelBase.hpp:24: ./libmaus2/suffixsort/GapArrayByte.hpp: In member function ‘void libmaus2::suffixsort::GapArrayByte::flush()’: ./libmaus2/suffixsort/GapArrayByte.hpp:134:42: warning: variable ‘overflowcnt’ set but not used [-Wunused-but-set-variable=] 134 | uint64_t overflowcnt = 0; | ^~~~~~~~~~~ In file included from ./libmaus2/suffixsort/BwtMergeTempFileNameSet.hpp:27, from ./libmaus2/suffixsort/BwtMergeBlockSortResult.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:33: ./libmaus2/util/DirectoryStructure.hpp: In member function ‘std::string libmaus2::util::DirectoryStructure::printGenerate(std::ostream&, std::string, uint64_t) const’: ./libmaus2/util/DirectoryStructure.hpp:207:58: warning: variable ‘batchcnt’ set but not used [-Wunused-but-set-variable=] 207 | uint64_t batchcnt = 0; | ^~~~~~~~ ./libmaus2/util/DirectoryStructure.hpp: In member function ‘std::string libmaus2::util::DirectoryStructure::printRemove(std::ostream&, std::string, uint64_t) const’: ./libmaus2/util/DirectoryStructure.hpp:282:58: warning: variable ‘batchcnt’ set but not used [-Wunused-but-set-variable=] 282 | uint64_t batchcnt = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:183, from ./libmaus2/huffman/CanonicalEncoder.hpp:26, from ./libmaus2/huffman/RLEncoder.hpp:25, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22: ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 2]’: ./libmaus2/huffman/HuffmanSorting.hpp:860:55: required from here 860 | huffman::EncodeTable enctable ( root ); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:188: ./libmaus2/huffman/HuffmanSorting.hpp: In instantiation of ‘static void libmaus2::huffman::HuffmanSorting::uncompressHuffmanCoded(uint64_t*, uint64_t, uint64_t, uint64_t, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::HuffmanTreeNode*, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::EncodeTable&) [with unsigned int lookupwords = 2; uint64_t = long unsigned int]’: ./libmaus2/huffman/HuffmanSorting.hpp:1091:27: required from here 1091 | uncompressHuffmanCoded(acode.get(), 0 /* bit offset */, lowhalf /* syms */, firsthighsym, enctable,dectable,root.get(),dectable0,dectable1,enctable0,enctable1); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/huffman/HuffmanSorting.hpp:534:42: warning: variable ‘alldecoffset’ set but not used [-Wunused-but-set-variable=] 534 | uint64_t alldecoffset = highdecoffset; | ^~~~~~~~~~~~ ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 1]’: ./libmaus2/huffman/CanonicalEncoder.hpp:219:116: required from here 219 | return ::libmaus2::huffman::EncodeTable<1>::unique_ptr_type(new ::libmaus2::huffman::EncodeTable<1>(Ptree.get())); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/wavelet/RlToHwtBase.hpp:30, from ./libmaus2/wavelet/RlToHwtTermRequest.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:44: ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp: In instantiation of ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTree(libmaus2::autoarray::AutoArray&, const std::string&, const std::string&, const libmaus2::huffman::HuffmanTree*, uint64_t) [with bool radixsort = true; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’: ./libmaus2/suffixsort/BwtMergeBlockSortRequest.hpp:862:90: required from ‘libmaus2::suffixsort::BwtMergeBlockSortResult libmaus2::suffixsort::BwtMergeBlockSortRequest::sortBlock(std::ostream*) const [with input_types_type = libmaus2::suffixsort::ByteInputTypes<32>; rl_encoder = libmaus2::huffman::RLEncoderTemplate, libmaus2::bitio::FastWriteBitWriterTemplate >, 128, 255, false> > >; std::ostream = std::basic_ostream]’ 862 | ::libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTree( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 863 | UT,tmpfilenames.getHWT(),tmpfileprefix,uhnode.get(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 864 | 1/* num threads */ | ~~~~~~~~~~~~~~~~~~ 865 | ); | ~ ./libmaus2/suffixsort/BwtMergeBlockSortRequest.hpp:979:79: required from ‘std::string libmaus2::suffixsort::BwtMergeBlockSortRequest::dispatch(std::ostream*) const [with rl_encoder = libmaus2::huffman::RLEncoderTemplate, libmaus2::bitio::FastWriteBitWriterTemplate >, 128, 255, false> > >; std::string = std::__cxx11::basic_string; std::ostream = std::basic_ostream]’ 979 | result = sortBlock,rl_encoder>(logstr); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BaseBlockSortThread.hpp:128:118: required from here 128 | block->sortresult = ::libmaus2::suffixsort::BwtMergeBlockSortResult::load(block->sortreq.dispatch(logstr)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:874:90: warning: variable ‘l_numsyms0’ set but not used [-Wunused-but-set-variable=] 874 | uint64_t l_numsyms0 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:879:90: warning: variable ‘r_numsyms1’ set but not used [-Wunused-but-set-variable=] 879 | uint64_t r_numsyms1 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:755:66: warning: variable ‘numsyms1’ set but not used [-Wunused-but-set-variable=] 755 | uint64_t numsyms1 = 0; | ^~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp: In instantiation of ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRl(const std::string&, const std::string&, const std::string&, const libmaus2::huffman::HuffmanTree&, uint64_t, uint64_t) [with rl_decoder = libmaus2::huffman::RLDecoder; bool radixsort = true; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1368:123: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwt(const std::string&, const std::string&, std::string, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’ 1368 | ::libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRl( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 1369 | bwt,hwt,tmpprefix,H, | ~~~~~~~~~~~~~~~~~~~~ 1370 | utf8WaveletMaxPartMem() /* part size maximum */, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1371 | utf8WaveletMaxThreads()); | ~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:4191:65: required from ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeBwt(const libmaus2::suffixsort::bwtb3m::BwtMergeSortOptions&, std::ostream*) [with input_types_type = libmaus2::suffixsort::ByteInputTypes<32>; std::ostream = std::basic_ostream]’ 4191 | libmaus2::wavelet::RlToHwtBase::rlToHwt(options.outfn, outhwt, options.tmpfilenamebase+"_finalhwttmp",options.numthreads) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateByte32.cpp:22:47: required from here 22 | template struct libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate< libmaus2::suffixsort::ByteInputTypes<32> >; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1419:90: warning: variable ‘l_numsyms0’ set but not used [-Wunused-but-set-variable=] 1419 | uint64_t l_numsyms0 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1424:90: warning: variable ‘r_numsyms1’ set but not used [-Wunused-but-set-variable=] 1424 | uint64_t r_numsyms1 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1299:66: warning: variable ‘numsyms1’ set but not used [-Wunused-but-set-variable=] 1299 | uint64_t numsyms1 = 0; | ^~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp: In instantiation of ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRlWithTerm(const std::vector >&, const std::string&, const std::string&, const libmaus2::huffman::HuffmanTree&, uint64_t, uint64_t, uint64_t, uint64_t) [with rl_decoder = libmaus2::huffman::RLDecoder; bool radixsort = true; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1500:131: required from ‘static void libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtTerm(const std::vector >&, const std::string&, std::string, libmaus2::huffman::HuffmanTree&, uint64_t, uint64_t, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’ 1500 | ::libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRlWithTerm( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 1501 | bwt,hwt,tmpprefix,H,p0r,bwtterm, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1502 | utf8WaveletMaxPartMem() /* maximum part size */, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1503 | utf8WaveletMaxThreads() | ~~~~~~~~~~~~~~~~~~~~~~~ 1504 | ); | ~ ./libmaus2/wavelet/RlToHwtBase.hpp:1687:17: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtTerm(const std::vector >&, const std::string&, std::string, std::string, uint64_t, uint64_t, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’ 1687 | rlToHwtTerm(bwt,hwt,tmpprefix,H,bwtterm,p0r,numthreads); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/wavelet/RlToHwtTermRequest.hpp:118:67: required from ‘libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtTermRequest::dispatch() [with rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >]’ 118 | libmaus2::wavelet::RlToHwtBase::rlToHwtTerm(bwt,hwt,tmpprefix,huftreefilename,bwtterm,p0r,numthreads) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:926:102: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::ensureWaveletTreeGenerated(const libmaus2::suffixsort::BwtMergeBlockSortResult&, std::ostream*) [with input_types_type = libmaus2::suffixsort::ByteInputTypes<32>; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::ostream = std::basic_ostream]’ 926 | libmaus2::wavelet::ImpCompactHuffmanWaveletTree::unique_ptr_type ptr(ureq->dispatch()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~ libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateByte32.cpp:22:47: required from here 22 | template struct libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate< libmaus2::suffixsort::ByteInputTypes<32> >; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:2048:90: warning: variable ‘l_numsyms0’ set but not used [-Wunused-but-set-variable=] 2048 | uint64_t l_numsyms0 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:2053:90: warning: variable ‘r_numsyms1’ set but not used [-Wunused-but-set-variable=] 2053 | uint64_t r_numsyms1 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1929:66: warning: variable ‘numsyms1’ set but not used [-Wunused-but-set-variable=] 1929 | uint64_t numsyms1 = 0; | ^~~~~~~~ libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateByte32.cpp -o libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplateByte32.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplateLz432.lo `test -f 'libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateLz432.cpp' || echo './'`libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateLz432.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateLz432.cpp -fPIC -DPIC -o libmaus2/suffixsort/bwtb3m/.libs/la-BwtMergeSortTemplateLz432.o In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/util/IntervalTree.hpp:25, from ./libmaus2/gamma/GammaRLDecoder.hpp:28, from ./libmaus2/gamma/GammaRLEncoder.hpp:29, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:24, from ./libmaus2/suffixsort/bwtb3m/BwtMergeComputeSampledSA.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateLz432.cpp:20: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/suffixsort/bwtb3m/GapArrayWrapper.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeIsaParallelBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:24: ./libmaus2/util/AtomicArray.hpp: At global scope: ./libmaus2/util/AtomicArray.hpp:45:43: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 45 | AtomicArray(AtomicArray const & O) = delete; | ^~~~~~~~~~~~~~~~~ ./libmaus2/util/AtomicArray.hpp:45:43: note: remove the ‘< >’ In file included from ./libmaus2/suffixsort/bwtb3m/BwtMergeIsaParallelBase.hpp:24: ./libmaus2/suffixsort/GapArrayByte.hpp: In member function ‘void libmaus2::suffixsort::GapArrayByte::flush()’: ./libmaus2/suffixsort/GapArrayByte.hpp:134:42: warning: variable ‘overflowcnt’ set but not used [-Wunused-but-set-variable=] 134 | uint64_t overflowcnt = 0; | ^~~~~~~~~~~ In file included from ./libmaus2/suffixsort/BwtMergeTempFileNameSet.hpp:27, from ./libmaus2/suffixsort/BwtMergeBlockSortResult.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:33: ./libmaus2/util/DirectoryStructure.hpp: In member function ‘std::string libmaus2::util::DirectoryStructure::printGenerate(std::ostream&, std::string, uint64_t) const’: ./libmaus2/util/DirectoryStructure.hpp:207:58: warning: variable ‘batchcnt’ set but not used [-Wunused-but-set-variable=] 207 | uint64_t batchcnt = 0; | ^~~~~~~~ ./libmaus2/util/DirectoryStructure.hpp: In member function ‘std::string libmaus2::util::DirectoryStructure::printRemove(std::ostream&, std::string, uint64_t) const’: ./libmaus2/util/DirectoryStructure.hpp:282:58: warning: variable ‘batchcnt’ set but not used [-Wunused-but-set-variable=] 282 | uint64_t batchcnt = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:183, from ./libmaus2/huffman/CanonicalEncoder.hpp:26, from ./libmaus2/huffman/RLEncoder.hpp:25, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22: ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 2]’: ./libmaus2/huffman/HuffmanSorting.hpp:860:55: required from here 860 | huffman::EncodeTable enctable ( root ); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:188: ./libmaus2/huffman/HuffmanSorting.hpp: In instantiation of ‘static void libmaus2::huffman::HuffmanSorting::uncompressHuffmanCoded(uint64_t*, uint64_t, uint64_t, uint64_t, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::HuffmanTreeNode*, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::EncodeTable&) [with unsigned int lookupwords = 2; uint64_t = long unsigned int]’: ./libmaus2/huffman/HuffmanSorting.hpp:1091:27: required from here 1091 | uncompressHuffmanCoded(acode.get(), 0 /* bit offset */, lowhalf /* syms */, firsthighsym, enctable,dectable,root.get(),dectable0,dectable1,enctable0,enctable1); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/huffman/HuffmanSorting.hpp:534:42: warning: variable ‘alldecoffset’ set but not used [-Wunused-but-set-variable=] 534 | uint64_t alldecoffset = highdecoffset; | ^~~~~~~~~~~~ ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 1]’: ./libmaus2/huffman/CanonicalEncoder.hpp:219:116: required from here 219 | return ::libmaus2::huffman::EncodeTable<1>::unique_ptr_type(new ::libmaus2::huffman::EncodeTable<1>(Ptree.get())); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/wavelet/RlToHwtBase.hpp:30, from ./libmaus2/wavelet/RlToHwtTermRequest.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:44: ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp: In instantiation of ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTree(libmaus2::autoarray::AutoArray&, const std::string&, const std::string&, const libmaus2::huffman::HuffmanTree*, uint64_t) [with bool radixsort = true; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’: ./libmaus2/suffixsort/BwtMergeBlockSortRequest.hpp:862:90: required from ‘libmaus2::suffixsort::BwtMergeBlockSortResult libmaus2::suffixsort::BwtMergeBlockSortRequest::sortBlock(std::ostream*) const [with input_types_type = libmaus2::suffixsort::ByteInputTypes<32>; rl_encoder = libmaus2::huffman::RLEncoderTemplate, libmaus2::bitio::FastWriteBitWriterTemplate >, 128, 255, false> > >; std::ostream = std::basic_ostream]’ 862 | ::libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTree( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 863 | UT,tmpfilenames.getHWT(),tmpfileprefix,uhnode.get(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 864 | 1/* num threads */ | ~~~~~~~~~~~~~~~~~~ 865 | ); | ~ ./libmaus2/suffixsort/BwtMergeBlockSortRequest.hpp:979:79: required from ‘std::string libmaus2::suffixsort::BwtMergeBlockSortRequest::dispatch(std::ostream*) const [with rl_encoder = libmaus2::huffman::RLEncoderTemplate, libmaus2::bitio::FastWriteBitWriterTemplate >, 128, 255, false> > >; std::string = std::__cxx11::basic_string; std::ostream = std::basic_ostream]’ 979 | result = sortBlock,rl_encoder>(logstr); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BaseBlockSortThread.hpp:128:118: required from here 128 | block->sortresult = ::libmaus2::suffixsort::BwtMergeBlockSortResult::load(block->sortreq.dispatch(logstr)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:874:90: warning: variable ‘l_numsyms0’ set but not used [-Wunused-but-set-variable=] 874 | uint64_t l_numsyms0 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:879:90: warning: variable ‘r_numsyms1’ set but not used [-Wunused-but-set-variable=] 879 | uint64_t r_numsyms1 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:755:66: warning: variable ‘numsyms1’ set but not used [-Wunused-but-set-variable=] 755 | uint64_t numsyms1 = 0; | ^~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp: In instantiation of ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRl(const std::string&, const std::string&, const std::string&, const libmaus2::huffman::HuffmanTree&, uint64_t, uint64_t) [with rl_decoder = libmaus2::huffman::RLDecoder; bool radixsort = true; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1368:123: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwt(const std::string&, const std::string&, std::string, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’ 1368 | ::libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRl( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 1369 | bwt,hwt,tmpprefix,H, | ~~~~~~~~~~~~~~~~~~~~ 1370 | utf8WaveletMaxPartMem() /* part size maximum */, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1371 | utf8WaveletMaxThreads()); | ~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:4191:65: required from ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeBwt(const libmaus2::suffixsort::bwtb3m::BwtMergeSortOptions&, std::ostream*) [with input_types_type = libmaus2::suffixsort::Lz4InputTypes<32>; std::ostream = std::basic_ostream]’ 4191 | libmaus2::wavelet::RlToHwtBase::rlToHwt(options.outfn, outhwt, options.tmpfilenamebase+"_finalhwttmp",options.numthreads) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateLz432.cpp:22:47: required from here 22 | template struct libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate< libmaus2::suffixsort::Lz4InputTypes<32> >; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1419:90: warning: variable ‘l_numsyms0’ set but not used [-Wunused-but-set-variable=] 1419 | uint64_t l_numsyms0 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1424:90: warning: variable ‘r_numsyms1’ set but not used [-Wunused-but-set-variable=] 1424 | uint64_t r_numsyms1 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1299:66: warning: variable ‘numsyms1’ set but not used [-Wunused-but-set-variable=] 1299 | uint64_t numsyms1 = 0; | ^~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp: In instantiation of ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRlWithTerm(const std::vector >&, const std::string&, const std::string&, const libmaus2::huffman::HuffmanTree&, uint64_t, uint64_t, uint64_t, uint64_t) [with rl_decoder = libmaus2::huffman::RLDecoder; bool radixsort = true; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1500:131: required from ‘static void libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtTerm(const std::vector >&, const std::string&, std::string, libmaus2::huffman::HuffmanTree&, uint64_t, uint64_t, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’ 1500 | ::libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRlWithTerm( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 1501 | bwt,hwt,tmpprefix,H,p0r,bwtterm, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1502 | utf8WaveletMaxPartMem() /* maximum part size */, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1503 | utf8WaveletMaxThreads() | ~~~~~~~~~~~~~~~~~~~~~~~ 1504 | ); | ~ ./libmaus2/wavelet/RlToHwtBase.hpp:1687:17: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtTerm(const std::vector >&, const std::string&, std::string, std::string, uint64_t, uint64_t, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’ 1687 | rlToHwtTerm(bwt,hwt,tmpprefix,H,bwtterm,p0r,numthreads); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/wavelet/RlToHwtTermRequest.hpp:118:67: required from ‘libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtTermRequest::dispatch() [with rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >]’ 118 | libmaus2::wavelet::RlToHwtBase::rlToHwtTerm(bwt,hwt,tmpprefix,huftreefilename,bwtterm,p0r,numthreads) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:926:102: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::ensureWaveletTreeGenerated(const libmaus2::suffixsort::BwtMergeBlockSortResult&, std::ostream*) [with input_types_type = libmaus2::suffixsort::Lz4InputTypes<32>; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::ostream = std::basic_ostream]’ 926 | libmaus2::wavelet::ImpCompactHuffmanWaveletTree::unique_ptr_type ptr(ureq->dispatch()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~ libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateLz432.cpp:22:47: required from here 22 | template struct libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate< libmaus2::suffixsort::Lz4InputTypes<32> >; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:2048:90: warning: variable ‘l_numsyms0’ set but not used [-Wunused-but-set-variable=] 2048 | uint64_t l_numsyms0 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:2053:90: warning: variable ‘r_numsyms1’ set but not used [-Wunused-but-set-variable=] 2053 | uint64_t r_numsyms1 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1929:66: warning: variable ‘numsyms1’ set but not used [-Wunused-but-set-variable=] 1929 | uint64_t numsyms1 = 0; | ^~~~~~~~ libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateLz432.cpp -o libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplateLz432.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplatePacTerm32.lo `test -f 'libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplatePacTerm32.cpp' || echo './'`libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplatePacTerm32.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplatePacTerm32.cpp -fPIC -DPIC -o libmaus2/suffixsort/bwtb3m/.libs/la-BwtMergeSortTemplatePacTerm32.o In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/util/IntervalTree.hpp:25, from ./libmaus2/gamma/GammaRLDecoder.hpp:28, from ./libmaus2/gamma/GammaRLEncoder.hpp:29, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:24, from ./libmaus2/suffixsort/bwtb3m/BwtMergeComputeSampledSA.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplatePacTerm32.cpp:20: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/suffixsort/bwtb3m/GapArrayWrapper.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeIsaParallelBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:24: ./libmaus2/util/AtomicArray.hpp: At global scope: ./libmaus2/util/AtomicArray.hpp:45:43: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 45 | AtomicArray(AtomicArray const & O) = delete; | ^~~~~~~~~~~~~~~~~ ./libmaus2/util/AtomicArray.hpp:45:43: note: remove the ‘< >’ In file included from ./libmaus2/suffixsort/bwtb3m/BwtMergeIsaParallelBase.hpp:24: ./libmaus2/suffixsort/GapArrayByte.hpp: In member function ‘void libmaus2::suffixsort::GapArrayByte::flush()’: ./libmaus2/suffixsort/GapArrayByte.hpp:134:42: warning: variable ‘overflowcnt’ set but not used [-Wunused-but-set-variable=] 134 | uint64_t overflowcnt = 0; | ^~~~~~~~~~~ In file included from ./libmaus2/suffixsort/BwtMergeTempFileNameSet.hpp:27, from ./libmaus2/suffixsort/BwtMergeBlockSortResult.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:33: ./libmaus2/util/DirectoryStructure.hpp: In member function ‘std::string libmaus2::util::DirectoryStructure::printGenerate(std::ostream&, std::string, uint64_t) const’: ./libmaus2/util/DirectoryStructure.hpp:207:58: warning: variable ‘batchcnt’ set but not used [-Wunused-but-set-variable=] 207 | uint64_t batchcnt = 0; | ^~~~~~~~ ./libmaus2/util/DirectoryStructure.hpp: In member function ‘std::string libmaus2::util::DirectoryStructure::printRemove(std::ostream&, std::string, uint64_t) const’: ./libmaus2/util/DirectoryStructure.hpp:282:58: warning: variable ‘batchcnt’ set but not used [-Wunused-but-set-variable=] 282 | uint64_t batchcnt = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:183, from ./libmaus2/huffman/CanonicalEncoder.hpp:26, from ./libmaus2/huffman/RLEncoder.hpp:25, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22: ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 2]’: ./libmaus2/huffman/HuffmanSorting.hpp:860:55: required from here 860 | huffman::EncodeTable enctable ( root ); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:188: ./libmaus2/huffman/HuffmanSorting.hpp: In instantiation of ‘static void libmaus2::huffman::HuffmanSorting::uncompressHuffmanCoded(uint64_t*, uint64_t, uint64_t, uint64_t, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::HuffmanTreeNode*, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::EncodeTable&) [with unsigned int lookupwords = 2; uint64_t = long unsigned int]’: ./libmaus2/huffman/HuffmanSorting.hpp:1091:27: required from here 1091 | uncompressHuffmanCoded(acode.get(), 0 /* bit offset */, lowhalf /* syms */, firsthighsym, enctable,dectable,root.get(),dectable0,dectable1,enctable0,enctable1); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/huffman/HuffmanSorting.hpp:534:42: warning: variable ‘alldecoffset’ set but not used [-Wunused-but-set-variable=] 534 | uint64_t alldecoffset = highdecoffset; | ^~~~~~~~~~~~ ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 1]’: ./libmaus2/huffman/CanonicalEncoder.hpp:219:116: required from here 219 | return ::libmaus2::huffman::EncodeTable<1>::unique_ptr_type(new ::libmaus2::huffman::EncodeTable<1>(Ptree.get())); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/wavelet/RlToHwtBase.hpp:30, from ./libmaus2/wavelet/RlToHwtTermRequest.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:44: ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp: In instantiation of ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTree(libmaus2::autoarray::AutoArray&, const std::string&, const std::string&, const libmaus2::huffman::HuffmanTree*, uint64_t) [with bool radixsort = true; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’: ./libmaus2/suffixsort/BwtMergeBlockSortRequest.hpp:862:90: required from ‘libmaus2::suffixsort::BwtMergeBlockSortResult libmaus2::suffixsort::BwtMergeBlockSortRequest::sortBlock(std::ostream*) const [with input_types_type = libmaus2::suffixsort::ByteInputTypes<32>; rl_encoder = libmaus2::huffman::RLEncoderTemplate, libmaus2::bitio::FastWriteBitWriterTemplate >, 128, 255, false> > >; std::ostream = std::basic_ostream]’ 862 | ::libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTree( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 863 | UT,tmpfilenames.getHWT(),tmpfileprefix,uhnode.get(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 864 | 1/* num threads */ | ~~~~~~~~~~~~~~~~~~ 865 | ); | ~ ./libmaus2/suffixsort/BwtMergeBlockSortRequest.hpp:979:79: required from ‘std::string libmaus2::suffixsort::BwtMergeBlockSortRequest::dispatch(std::ostream*) const [with rl_encoder = libmaus2::huffman::RLEncoderTemplate, libmaus2::bitio::FastWriteBitWriterTemplate >, 128, 255, false> > >; std::string = std::__cxx11::basic_string; std::ostream = std::basic_ostream]’ 979 | result = sortBlock,rl_encoder>(logstr); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BaseBlockSortThread.hpp:128:118: required from here 128 | block->sortresult = ::libmaus2::suffixsort::BwtMergeBlockSortResult::load(block->sortreq.dispatch(logstr)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:874:90: warning: variable ‘l_numsyms0’ set but not used [-Wunused-but-set-variable=] 874 | uint64_t l_numsyms0 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:879:90: warning: variable ‘r_numsyms1’ set but not used [-Wunused-but-set-variable=] 879 | uint64_t r_numsyms1 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:755:66: warning: variable ‘numsyms1’ set but not used [-Wunused-but-set-variable=] 755 | uint64_t numsyms1 = 0; | ^~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp: In instantiation of ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRl(const std::string&, const std::string&, const std::string&, const libmaus2::huffman::HuffmanTree&, uint64_t, uint64_t) [with rl_decoder = libmaus2::huffman::RLDecoder; bool radixsort = true; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1368:123: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwt(const std::string&, const std::string&, std::string, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’ 1368 | ::libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRl( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 1369 | bwt,hwt,tmpprefix,H, | ~~~~~~~~~~~~~~~~~~~~ 1370 | utf8WaveletMaxPartMem() /* part size maximum */, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1371 | utf8WaveletMaxThreads()); | ~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:4191:65: required from ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeBwt(const libmaus2::suffixsort::bwtb3m::BwtMergeSortOptions&, std::ostream*) [with input_types_type = libmaus2::suffixsort::PacTermInputTypes<32>; std::ostream = std::basic_ostream]’ 4191 | libmaus2::wavelet::RlToHwtBase::rlToHwt(options.outfn, outhwt, options.tmpfilenamebase+"_finalhwttmp",options.numthreads) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplatePacTerm32.cpp:22:47: required from here 22 | template struct libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate< libmaus2::suffixsort::PacTermInputTypes<32> >; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1419:90: warning: variable ‘l_numsyms0’ set but not used [-Wunused-but-set-variable=] 1419 | uint64_t l_numsyms0 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1424:90: warning: variable ‘r_numsyms1’ set but not used [-Wunused-but-set-variable=] 1424 | uint64_t r_numsyms1 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1299:66: warning: variable ‘numsyms1’ set but not used [-Wunused-but-set-variable=] 1299 | uint64_t numsyms1 = 0; | ^~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp: In instantiation of ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRlWithTerm(const std::vector >&, const std::string&, const std::string&, const libmaus2::huffman::HuffmanTree&, uint64_t, uint64_t, uint64_t, uint64_t) [with rl_decoder = libmaus2::huffman::RLDecoder; bool radixsort = true; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1500:131: required from ‘static void libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtTerm(const std::vector >&, const std::string&, std::string, libmaus2::huffman::HuffmanTree&, uint64_t, uint64_t, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’ 1500 | ::libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRlWithTerm( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 1501 | bwt,hwt,tmpprefix,H,p0r,bwtterm, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1502 | utf8WaveletMaxPartMem() /* maximum part size */, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1503 | utf8WaveletMaxThreads() | ~~~~~~~~~~~~~~~~~~~~~~~ 1504 | ); | ~ ./libmaus2/wavelet/RlToHwtBase.hpp:1687:17: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtTerm(const std::vector >&, const std::string&, std::string, std::string, uint64_t, uint64_t, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’ 1687 | rlToHwtTerm(bwt,hwt,tmpprefix,H,bwtterm,p0r,numthreads); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/wavelet/RlToHwtTermRequest.hpp:118:67: required from ‘libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtTermRequest::dispatch() [with rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >]’ 118 | libmaus2::wavelet::RlToHwtBase::rlToHwtTerm(bwt,hwt,tmpprefix,huftreefilename,bwtterm,p0r,numthreads) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:926:102: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::ensureWaveletTreeGenerated(const libmaus2::suffixsort::BwtMergeBlockSortResult&, std::ostream*) [with input_types_type = libmaus2::suffixsort::PacTermInputTypes<32>; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::ostream = std::basic_ostream]’ 926 | libmaus2::wavelet::ImpCompactHuffmanWaveletTree::unique_ptr_type ptr(ureq->dispatch()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~ libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplatePacTerm32.cpp:22:47: required from here 22 | template struct libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate< libmaus2::suffixsort::PacTermInputTypes<32> >; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:2048:90: warning: variable ‘l_numsyms0’ set but not used [-Wunused-but-set-variable=] 2048 | uint64_t l_numsyms0 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:2053:90: warning: variable ‘r_numsyms1’ set but not used [-Wunused-but-set-variable=] 2053 | uint64_t r_numsyms1 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1929:66: warning: variable ‘numsyms1’ set but not used [-Wunused-but-set-variable=] 1929 | uint64_t numsyms1 = 0; | ^~~~~~~~ libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplatePacTerm32.cpp -o libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplatePacTerm32.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplateCompact32.lo `test -f 'libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateCompact32.cpp' || echo './'`libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateCompact32.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateCompact32.cpp -fPIC -DPIC -o libmaus2/suffixsort/bwtb3m/.libs/la-BwtMergeSortTemplateCompact32.o In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/util/IntervalTree.hpp:25, from ./libmaus2/gamma/GammaRLDecoder.hpp:28, from ./libmaus2/gamma/GammaRLEncoder.hpp:29, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:24, from ./libmaus2/suffixsort/bwtb3m/BwtMergeComputeSampledSA.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateCompact32.cpp:20: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/suffixsort/bwtb3m/GapArrayWrapper.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeIsaParallelBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:24: ./libmaus2/util/AtomicArray.hpp: At global scope: ./libmaus2/util/AtomicArray.hpp:45:43: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 45 | AtomicArray(AtomicArray const & O) = delete; | ^~~~~~~~~~~~~~~~~ ./libmaus2/util/AtomicArray.hpp:45:43: note: remove the ‘< >’ In file included from ./libmaus2/suffixsort/bwtb3m/BwtMergeIsaParallelBase.hpp:24: ./libmaus2/suffixsort/GapArrayByte.hpp: In member function ‘void libmaus2::suffixsort::GapArrayByte::flush()’: ./libmaus2/suffixsort/GapArrayByte.hpp:134:42: warning: variable ‘overflowcnt’ set but not used [-Wunused-but-set-variable=] 134 | uint64_t overflowcnt = 0; | ^~~~~~~~~~~ In file included from ./libmaus2/suffixsort/BwtMergeTempFileNameSet.hpp:27, from ./libmaus2/suffixsort/BwtMergeBlockSortResult.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:33: ./libmaus2/util/DirectoryStructure.hpp: In member function ‘std::string libmaus2::util::DirectoryStructure::printGenerate(std::ostream&, std::string, uint64_t) const’: ./libmaus2/util/DirectoryStructure.hpp:207:58: warning: variable ‘batchcnt’ set but not used [-Wunused-but-set-variable=] 207 | uint64_t batchcnt = 0; | ^~~~~~~~ ./libmaus2/util/DirectoryStructure.hpp: In member function ‘std::string libmaus2::util::DirectoryStructure::printRemove(std::ostream&, std::string, uint64_t) const’: ./libmaus2/util/DirectoryStructure.hpp:282:58: warning: variable ‘batchcnt’ set but not used [-Wunused-but-set-variable=] 282 | uint64_t batchcnt = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:183, from ./libmaus2/huffman/CanonicalEncoder.hpp:26, from ./libmaus2/huffman/RLEncoder.hpp:25, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22: ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 2]’: ./libmaus2/huffman/HuffmanSorting.hpp:860:55: required from here 860 | huffman::EncodeTable enctable ( root ); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:188: ./libmaus2/huffman/HuffmanSorting.hpp: In instantiation of ‘static void libmaus2::huffman::HuffmanSorting::uncompressHuffmanCoded(uint64_t*, uint64_t, uint64_t, uint64_t, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::HuffmanTreeNode*, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::EncodeTable&) [with unsigned int lookupwords = 2; uint64_t = long unsigned int]’: ./libmaus2/huffman/HuffmanSorting.hpp:1091:27: required from here 1091 | uncompressHuffmanCoded(acode.get(), 0 /* bit offset */, lowhalf /* syms */, firsthighsym, enctable,dectable,root.get(),dectable0,dectable1,enctable0,enctable1); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/huffman/HuffmanSorting.hpp:534:42: warning: variable ‘alldecoffset’ set but not used [-Wunused-but-set-variable=] 534 | uint64_t alldecoffset = highdecoffset; | ^~~~~~~~~~~~ ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 1]’: ./libmaus2/huffman/CanonicalEncoder.hpp:219:116: required from here 219 | return ::libmaus2::huffman::EncodeTable<1>::unique_ptr_type(new ::libmaus2::huffman::EncodeTable<1>(Ptree.get())); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/wavelet/RlToHwtBase.hpp:30, from ./libmaus2/wavelet/RlToHwtTermRequest.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:44: ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp: In instantiation of ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTree(libmaus2::autoarray::AutoArray&, const std::string&, const std::string&, const libmaus2::huffman::HuffmanTree*, uint64_t) [with bool radixsort = true; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’: ./libmaus2/suffixsort/BwtMergeBlockSortRequest.hpp:862:90: required from ‘libmaus2::suffixsort::BwtMergeBlockSortResult libmaus2::suffixsort::BwtMergeBlockSortRequest::sortBlock(std::ostream*) const [with input_types_type = libmaus2::suffixsort::ByteInputTypes<32>; rl_encoder = libmaus2::huffman::RLEncoderTemplate, libmaus2::bitio::FastWriteBitWriterTemplate >, 128, 255, false> > >; std::ostream = std::basic_ostream]’ 862 | ::libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTree( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 863 | UT,tmpfilenames.getHWT(),tmpfileprefix,uhnode.get(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 864 | 1/* num threads */ | ~~~~~~~~~~~~~~~~~~ 865 | ); | ~ ./libmaus2/suffixsort/BwtMergeBlockSortRequest.hpp:979:79: required from ‘std::string libmaus2::suffixsort::BwtMergeBlockSortRequest::dispatch(std::ostream*) const [with rl_encoder = libmaus2::huffman::RLEncoderTemplate, libmaus2::bitio::FastWriteBitWriterTemplate >, 128, 255, false> > >; std::string = std::__cxx11::basic_string; std::ostream = std::basic_ostream]’ 979 | result = sortBlock,rl_encoder>(logstr); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BaseBlockSortThread.hpp:128:118: required from here 128 | block->sortresult = ::libmaus2::suffixsort::BwtMergeBlockSortResult::load(block->sortreq.dispatch(logstr)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:874:90: warning: variable ‘l_numsyms0’ set but not used [-Wunused-but-set-variable=] 874 | uint64_t l_numsyms0 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:879:90: warning: variable ‘r_numsyms1’ set but not used [-Wunused-but-set-variable=] 879 | uint64_t r_numsyms1 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:755:66: warning: variable ‘numsyms1’ set but not used [-Wunused-but-set-variable=] 755 | uint64_t numsyms1 = 0; | ^~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp: In instantiation of ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRl(const std::string&, const std::string&, const std::string&, const libmaus2::huffman::HuffmanTree&, uint64_t, uint64_t) [with rl_decoder = libmaus2::huffman::RLDecoder; bool radixsort = true; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1368:123: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwt(const std::string&, const std::string&, std::string, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’ 1368 | ::libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRl( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 1369 | bwt,hwt,tmpprefix,H, | ~~~~~~~~~~~~~~~~~~~~ 1370 | utf8WaveletMaxPartMem() /* part size maximum */, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1371 | utf8WaveletMaxThreads()); | ~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:4191:65: required from ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeBwt(const libmaus2::suffixsort::bwtb3m::BwtMergeSortOptions&, std::ostream*) [with input_types_type = libmaus2::suffixsort::CompactInputTypes<32>; std::ostream = std::basic_ostream]’ 4191 | libmaus2::wavelet::RlToHwtBase::rlToHwt(options.outfn, outhwt, options.tmpfilenamebase+"_finalhwttmp",options.numthreads) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateCompact32.cpp:22:47: required from here 22 | template struct libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate< libmaus2::suffixsort::CompactInputTypes<32> >; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1419:90: warning: variable ‘l_numsyms0’ set but not used [-Wunused-but-set-variable=] 1419 | uint64_t l_numsyms0 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1424:90: warning: variable ‘r_numsyms1’ set but not used [-Wunused-but-set-variable=] 1424 | uint64_t r_numsyms1 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1299:66: warning: variable ‘numsyms1’ set but not used [-Wunused-but-set-variable=] 1299 | uint64_t numsyms1 = 0; | ^~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp: In instantiation of ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRlWithTerm(const std::vector >&, const std::string&, const std::string&, const libmaus2::huffman::HuffmanTree&, uint64_t, uint64_t, uint64_t, uint64_t) [with rl_decoder = libmaus2::huffman::RLDecoder; bool radixsort = true; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1500:131: required from ‘static void libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtTerm(const std::vector >&, const std::string&, std::string, libmaus2::huffman::HuffmanTree&, uint64_t, uint64_t, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’ 1500 | ::libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRlWithTerm( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 1501 | bwt,hwt,tmpprefix,H,p0r,bwtterm, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1502 | utf8WaveletMaxPartMem() /* maximum part size */, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1503 | utf8WaveletMaxThreads() | ~~~~~~~~~~~~~~~~~~~~~~~ 1504 | ); | ~ ./libmaus2/wavelet/RlToHwtBase.hpp:1687:17: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtTerm(const std::vector >&, const std::string&, std::string, std::string, uint64_t, uint64_t, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’ 1687 | rlToHwtTerm(bwt,hwt,tmpprefix,H,bwtterm,p0r,numthreads); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/wavelet/RlToHwtTermRequest.hpp:118:67: required from ‘libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtTermRequest::dispatch() [with rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >]’ 118 | libmaus2::wavelet::RlToHwtBase::rlToHwtTerm(bwt,hwt,tmpprefix,huftreefilename,bwtterm,p0r,numthreads) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:926:102: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::ensureWaveletTreeGenerated(const libmaus2::suffixsort::BwtMergeBlockSortResult&, std::ostream*) [with input_types_type = libmaus2::suffixsort::CompactInputTypes<32>; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::ostream = std::basic_ostream]’ 926 | libmaus2::wavelet::ImpCompactHuffmanWaveletTree::unique_ptr_type ptr(ureq->dispatch()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~ libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateCompact32.cpp:22:47: required from here 22 | template struct libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate< libmaus2::suffixsort::CompactInputTypes<32> >; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:2048:90: warning: variable ‘l_numsyms0’ set but not used [-Wunused-but-set-variable=] 2048 | uint64_t l_numsyms0 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:2053:90: warning: variable ‘r_numsyms1’ set but not used [-Wunused-but-set-variable=] 2053 | uint64_t r_numsyms1 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1929:66: warning: variable ‘numsyms1’ set but not used [-Wunused-but-set-variable=] 1929 | uint64_t numsyms1 = 0; | ^~~~~~~~ libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateCompact32.cpp -o libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplateCompact32.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplatePac32.lo `test -f 'libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplatePac32.cpp' || echo './'`libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplatePac32.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplatePac32.cpp -fPIC -DPIC -o libmaus2/suffixsort/bwtb3m/.libs/la-BwtMergeSortTemplatePac32.o In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/util/IntervalTree.hpp:25, from ./libmaus2/gamma/GammaRLDecoder.hpp:28, from ./libmaus2/gamma/GammaRLEncoder.hpp:29, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:24, from ./libmaus2/suffixsort/bwtb3m/BwtMergeComputeSampledSA.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplatePac32.cpp:20: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/suffixsort/bwtb3m/GapArrayWrapper.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeIsaParallelBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:24: ./libmaus2/util/AtomicArray.hpp: At global scope: ./libmaus2/util/AtomicArray.hpp:45:43: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 45 | AtomicArray(AtomicArray const & O) = delete; | ^~~~~~~~~~~~~~~~~ ./libmaus2/util/AtomicArray.hpp:45:43: note: remove the ‘< >’ In file included from ./libmaus2/suffixsort/bwtb3m/BwtMergeIsaParallelBase.hpp:24: ./libmaus2/suffixsort/GapArrayByte.hpp: In member function ‘void libmaus2::suffixsort::GapArrayByte::flush()’: ./libmaus2/suffixsort/GapArrayByte.hpp:134:42: warning: variable ‘overflowcnt’ set but not used [-Wunused-but-set-variable=] 134 | uint64_t overflowcnt = 0; | ^~~~~~~~~~~ In file included from ./libmaus2/suffixsort/BwtMergeTempFileNameSet.hpp:27, from ./libmaus2/suffixsort/BwtMergeBlockSortResult.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:33: ./libmaus2/util/DirectoryStructure.hpp: In member function ‘std::string libmaus2::util::DirectoryStructure::printGenerate(std::ostream&, std::string, uint64_t) const’: ./libmaus2/util/DirectoryStructure.hpp:207:58: warning: variable ‘batchcnt’ set but not used [-Wunused-but-set-variable=] 207 | uint64_t batchcnt = 0; | ^~~~~~~~ ./libmaus2/util/DirectoryStructure.hpp: In member function ‘std::string libmaus2::util::DirectoryStructure::printRemove(std::ostream&, std::string, uint64_t) const’: ./libmaus2/util/DirectoryStructure.hpp:282:58: warning: variable ‘batchcnt’ set but not used [-Wunused-but-set-variable=] 282 | uint64_t batchcnt = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:183, from ./libmaus2/huffman/CanonicalEncoder.hpp:26, from ./libmaus2/huffman/RLEncoder.hpp:25, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22: ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 2]’: ./libmaus2/huffman/HuffmanSorting.hpp:860:55: required from here 860 | huffman::EncodeTable enctable ( root ); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:188: ./libmaus2/huffman/HuffmanSorting.hpp: In instantiation of ‘static void libmaus2::huffman::HuffmanSorting::uncompressHuffmanCoded(uint64_t*, uint64_t, uint64_t, uint64_t, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::HuffmanTreeNode*, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::EncodeTable&) [with unsigned int lookupwords = 2; uint64_t = long unsigned int]’: ./libmaus2/huffman/HuffmanSorting.hpp:1091:27: required from here 1091 | uncompressHuffmanCoded(acode.get(), 0 /* bit offset */, lowhalf /* syms */, firsthighsym, enctable,dectable,root.get(),dectable0,dectable1,enctable0,enctable1); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/huffman/HuffmanSorting.hpp:534:42: warning: variable ‘alldecoffset’ set but not used [-Wunused-but-set-variable=] 534 | uint64_t alldecoffset = highdecoffset; | ^~~~~~~~~~~~ ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 1]’: ./libmaus2/huffman/CanonicalEncoder.hpp:219:116: required from here 219 | return ::libmaus2::huffman::EncodeTable<1>::unique_ptr_type(new ::libmaus2::huffman::EncodeTable<1>(Ptree.get())); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/wavelet/RlToHwtBase.hpp:30, from ./libmaus2/wavelet/RlToHwtTermRequest.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:44: ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp: In instantiation of ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTree(libmaus2::autoarray::AutoArray&, const std::string&, const std::string&, const libmaus2::huffman::HuffmanTree*, uint64_t) [with bool radixsort = true; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’: ./libmaus2/suffixsort/BwtMergeBlockSortRequest.hpp:862:90: required from ‘libmaus2::suffixsort::BwtMergeBlockSortResult libmaus2::suffixsort::BwtMergeBlockSortRequest::sortBlock(std::ostream*) const [with input_types_type = libmaus2::suffixsort::ByteInputTypes<32>; rl_encoder = libmaus2::huffman::RLEncoderTemplate, libmaus2::bitio::FastWriteBitWriterTemplate >, 128, 255, false> > >; std::ostream = std::basic_ostream]’ 862 | ::libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTree( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 863 | UT,tmpfilenames.getHWT(),tmpfileprefix,uhnode.get(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 864 | 1/* num threads */ | ~~~~~~~~~~~~~~~~~~ 865 | ); | ~ ./libmaus2/suffixsort/BwtMergeBlockSortRequest.hpp:979:79: required from ‘std::string libmaus2::suffixsort::BwtMergeBlockSortRequest::dispatch(std::ostream*) const [with rl_encoder = libmaus2::huffman::RLEncoderTemplate, libmaus2::bitio::FastWriteBitWriterTemplate >, 128, 255, false> > >; std::string = std::__cxx11::basic_string; std::ostream = std::basic_ostream]’ 979 | result = sortBlock,rl_encoder>(logstr); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BaseBlockSortThread.hpp:128:118: required from here 128 | block->sortresult = ::libmaus2::suffixsort::BwtMergeBlockSortResult::load(block->sortreq.dispatch(logstr)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:874:90: warning: variable ‘l_numsyms0’ set but not used [-Wunused-but-set-variable=] 874 | uint64_t l_numsyms0 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:879:90: warning: variable ‘r_numsyms1’ set but not used [-Wunused-but-set-variable=] 879 | uint64_t r_numsyms1 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:755:66: warning: variable ‘numsyms1’ set but not used [-Wunused-but-set-variable=] 755 | uint64_t numsyms1 = 0; | ^~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp: In instantiation of ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRl(const std::string&, const std::string&, const std::string&, const libmaus2::huffman::HuffmanTree&, uint64_t, uint64_t) [with rl_decoder = libmaus2::huffman::RLDecoder; bool radixsort = true; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1368:123: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwt(const std::string&, const std::string&, std::string, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’ 1368 | ::libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRl( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 1369 | bwt,hwt,tmpprefix,H, | ~~~~~~~~~~~~~~~~~~~~ 1370 | utf8WaveletMaxPartMem() /* part size maximum */, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1371 | utf8WaveletMaxThreads()); | ~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:4191:65: required from ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeBwt(const libmaus2::suffixsort::bwtb3m::BwtMergeSortOptions&, std::ostream*) [with input_types_type = libmaus2::suffixsort::PacInputTypes<32>; std::ostream = std::basic_ostream]’ 4191 | libmaus2::wavelet::RlToHwtBase::rlToHwt(options.outfn, outhwt, options.tmpfilenamebase+"_finalhwttmp",options.numthreads) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplatePac32.cpp:22:47: required from here 22 | template struct libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate< libmaus2::suffixsort::PacInputTypes<32> >; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1419:90: warning: variable ‘l_numsyms0’ set but not used [-Wunused-but-set-variable=] 1419 | uint64_t l_numsyms0 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1424:90: warning: variable ‘r_numsyms1’ set but not used [-Wunused-but-set-variable=] 1424 | uint64_t r_numsyms1 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1299:66: warning: variable ‘numsyms1’ set but not used [-Wunused-but-set-variable=] 1299 | uint64_t numsyms1 = 0; | ^~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp: In instantiation of ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRlWithTerm(const std::vector >&, const std::string&, const std::string&, const libmaus2::huffman::HuffmanTree&, uint64_t, uint64_t, uint64_t, uint64_t) [with rl_decoder = libmaus2::huffman::RLDecoder; bool radixsort = true; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1500:131: required from ‘static void libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtTerm(const std::vector >&, const std::string&, std::string, libmaus2::huffman::HuffmanTree&, uint64_t, uint64_t, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’ 1500 | ::libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRlWithTerm( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 1501 | bwt,hwt,tmpprefix,H,p0r,bwtterm, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1502 | utf8WaveletMaxPartMem() /* maximum part size */, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1503 | utf8WaveletMaxThreads() | ~~~~~~~~~~~~~~~~~~~~~~~ 1504 | ); | ~ ./libmaus2/wavelet/RlToHwtBase.hpp:1687:17: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtTerm(const std::vector >&, const std::string&, std::string, std::string, uint64_t, uint64_t, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’ 1687 | rlToHwtTerm(bwt,hwt,tmpprefix,H,bwtterm,p0r,numthreads); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/wavelet/RlToHwtTermRequest.hpp:118:67: required from ‘libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtTermRequest::dispatch() [with rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >]’ 118 | libmaus2::wavelet::RlToHwtBase::rlToHwtTerm(bwt,hwt,tmpprefix,huftreefilename,bwtterm,p0r,numthreads) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:926:102: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::ensureWaveletTreeGenerated(const libmaus2::suffixsort::BwtMergeBlockSortResult&, std::ostream*) [with input_types_type = libmaus2::suffixsort::PacInputTypes<32>; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::ostream = std::basic_ostream]’ 926 | libmaus2::wavelet::ImpCompactHuffmanWaveletTree::unique_ptr_type ptr(ureq->dispatch()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~ libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplatePac32.cpp:22:47: required from here 22 | template struct libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate< libmaus2::suffixsort::PacInputTypes<32> >; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:2048:90: warning: variable ‘l_numsyms0’ set but not used [-Wunused-but-set-variable=] 2048 | uint64_t l_numsyms0 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:2053:90: warning: variable ‘r_numsyms1’ set but not used [-Wunused-but-set-variable=] 2053 | uint64_t r_numsyms1 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1929:66: warning: variable ‘numsyms1’ set but not used [-Wunused-but-set-variable=] 1929 | uint64_t numsyms1 = 0; | ^~~~~~~~ libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplatePac32.cpp -o libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplatePac32.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplateUtf832.lo `test -f 'libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateUtf832.cpp' || echo './'`libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateUtf832.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateUtf832.cpp -fPIC -DPIC -o libmaus2/suffixsort/bwtb3m/.libs/la-BwtMergeSortTemplateUtf832.o In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/util/IntervalTree.hpp:25, from ./libmaus2/gamma/GammaRLDecoder.hpp:28, from ./libmaus2/gamma/GammaRLEncoder.hpp:29, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:24, from ./libmaus2/suffixsort/bwtb3m/BwtMergeComputeSampledSA.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateUtf832.cpp:20: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/suffixsort/bwtb3m/GapArrayWrapper.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeIsaParallelBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:24: ./libmaus2/util/AtomicArray.hpp: At global scope: ./libmaus2/util/AtomicArray.hpp:45:43: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 45 | AtomicArray(AtomicArray const & O) = delete; | ^~~~~~~~~~~~~~~~~ ./libmaus2/util/AtomicArray.hpp:45:43: note: remove the ‘< >’ In file included from ./libmaus2/suffixsort/bwtb3m/BwtMergeIsaParallelBase.hpp:24: ./libmaus2/suffixsort/GapArrayByte.hpp: In member function ‘void libmaus2::suffixsort::GapArrayByte::flush()’: ./libmaus2/suffixsort/GapArrayByte.hpp:134:42: warning: variable ‘overflowcnt’ set but not used [-Wunused-but-set-variable=] 134 | uint64_t overflowcnt = 0; | ^~~~~~~~~~~ In file included from ./libmaus2/suffixsort/BwtMergeTempFileNameSet.hpp:27, from ./libmaus2/suffixsort/BwtMergeBlockSortResult.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:33: ./libmaus2/util/DirectoryStructure.hpp: In member function ‘std::string libmaus2::util::DirectoryStructure::printGenerate(std::ostream&, std::string, uint64_t) const’: ./libmaus2/util/DirectoryStructure.hpp:207:58: warning: variable ‘batchcnt’ set but not used [-Wunused-but-set-variable=] 207 | uint64_t batchcnt = 0; | ^~~~~~~~ ./libmaus2/util/DirectoryStructure.hpp: In member function ‘std::string libmaus2::util::DirectoryStructure::printRemove(std::ostream&, std::string, uint64_t) const’: ./libmaus2/util/DirectoryStructure.hpp:282:58: warning: variable ‘batchcnt’ set but not used [-Wunused-but-set-variable=] 282 | uint64_t batchcnt = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:183, from ./libmaus2/huffman/CanonicalEncoder.hpp:26, from ./libmaus2/huffman/RLEncoder.hpp:25, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22: ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 2]’: ./libmaus2/huffman/HuffmanSorting.hpp:860:55: required from here 860 | huffman::EncodeTable enctable ( root ); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:188: ./libmaus2/huffman/HuffmanSorting.hpp: In instantiation of ‘static void libmaus2::huffman::HuffmanSorting::uncompressHuffmanCoded(uint64_t*, uint64_t, uint64_t, uint64_t, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::HuffmanTreeNode*, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::EncodeTable&) [with unsigned int lookupwords = 2; uint64_t = long unsigned int]’: ./libmaus2/huffman/HuffmanSorting.hpp:1091:27: required from here 1091 | uncompressHuffmanCoded(acode.get(), 0 /* bit offset */, lowhalf /* syms */, firsthighsym, enctable,dectable,root.get(),dectable0,dectable1,enctable0,enctable1); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/huffman/HuffmanSorting.hpp:534:42: warning: variable ‘alldecoffset’ set but not used [-Wunused-but-set-variable=] 534 | uint64_t alldecoffset = highdecoffset; | ^~~~~~~~~~~~ ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 1]’: ./libmaus2/huffman/CanonicalEncoder.hpp:219:116: required from here 219 | return ::libmaus2::huffman::EncodeTable<1>::unique_ptr_type(new ::libmaus2::huffman::EncodeTable<1>(Ptree.get())); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/wavelet/RlToHwtBase.hpp:30, from ./libmaus2/wavelet/RlToHwtTermRequest.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:44: ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp: In instantiation of ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTree(libmaus2::autoarray::AutoArray&, const std::string&, const std::string&, const libmaus2::huffman::HuffmanTree*, uint64_t) [with bool radixsort = true; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’: ./libmaus2/suffixsort/BwtMergeBlockSortRequest.hpp:862:90: required from ‘libmaus2::suffixsort::BwtMergeBlockSortResult libmaus2::suffixsort::BwtMergeBlockSortRequest::sortBlock(std::ostream*) const [with input_types_type = libmaus2::suffixsort::ByteInputTypes<32>; rl_encoder = libmaus2::huffman::RLEncoderTemplate, libmaus2::bitio::FastWriteBitWriterTemplate >, 128, 255, false> > >; std::ostream = std::basic_ostream]’ 862 | ::libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTree( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 863 | UT,tmpfilenames.getHWT(),tmpfileprefix,uhnode.get(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 864 | 1/* num threads */ | ~~~~~~~~~~~~~~~~~~ 865 | ); | ~ ./libmaus2/suffixsort/BwtMergeBlockSortRequest.hpp:979:79: required from ‘std::string libmaus2::suffixsort::BwtMergeBlockSortRequest::dispatch(std::ostream*) const [with rl_encoder = libmaus2::huffman::RLEncoderTemplate, libmaus2::bitio::FastWriteBitWriterTemplate >, 128, 255, false> > >; std::string = std::__cxx11::basic_string; std::ostream = std::basic_ostream]’ 979 | result = sortBlock,rl_encoder>(logstr); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BaseBlockSortThread.hpp:128:118: required from here 128 | block->sortresult = ::libmaus2::suffixsort::BwtMergeBlockSortResult::load(block->sortreq.dispatch(logstr)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:874:90: warning: variable ‘l_numsyms0’ set but not used [-Wunused-but-set-variable=] 874 | uint64_t l_numsyms0 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:879:90: warning: variable ‘r_numsyms1’ set but not used [-Wunused-but-set-variable=] 879 | uint64_t r_numsyms1 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:755:66: warning: variable ‘numsyms1’ set but not used [-Wunused-but-set-variable=] 755 | uint64_t numsyms1 = 0; | ^~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp: In instantiation of ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRl(const std::string&, const std::string&, const std::string&, const libmaus2::huffman::HuffmanTree&, uint64_t, uint64_t) [with rl_decoder = libmaus2::huffman::RLDecoder; bool radixsort = true; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1368:123: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwt(const std::string&, const std::string&, std::string, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’ 1368 | ::libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRl( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 1369 | bwt,hwt,tmpprefix,H, | ~~~~~~~~~~~~~~~~~~~~ 1370 | utf8WaveletMaxPartMem() /* part size maximum */, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1371 | utf8WaveletMaxThreads()); | ~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:4191:65: required from ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeBwt(const libmaus2::suffixsort::bwtb3m::BwtMergeSortOptions&, std::ostream*) [with input_types_type = libmaus2::suffixsort::Utf8InputTypes<32>; std::ostream = std::basic_ostream]’ 4191 | libmaus2::wavelet::RlToHwtBase::rlToHwt(options.outfn, outhwt, options.tmpfilenamebase+"_finalhwttmp",options.numthreads) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateUtf832.cpp:22:47: required from here 22 | template struct libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate< libmaus2::suffixsort::Utf8InputTypes<32> >; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1419:90: warning: variable ‘l_numsyms0’ set but not used [-Wunused-but-set-variable=] 1419 | uint64_t l_numsyms0 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1424:90: warning: variable ‘r_numsyms1’ set but not used [-Wunused-but-set-variable=] 1424 | uint64_t r_numsyms1 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1299:66: warning: variable ‘numsyms1’ set but not used [-Wunused-but-set-variable=] 1299 | uint64_t numsyms1 = 0; | ^~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp: In instantiation of ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRlWithTerm(const std::vector >&, const std::string&, const std::string&, const libmaus2::huffman::HuffmanTree&, uint64_t, uint64_t, uint64_t, uint64_t) [with rl_decoder = libmaus2::huffman::RLDecoder; bool radixsort = true; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1500:131: required from ‘static void libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtTerm(const std::vector >&, const std::string&, std::string, libmaus2::huffman::HuffmanTree&, uint64_t, uint64_t, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’ 1500 | ::libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRlWithTerm( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 1501 | bwt,hwt,tmpprefix,H,p0r,bwtterm, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1502 | utf8WaveletMaxPartMem() /* maximum part size */, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1503 | utf8WaveletMaxThreads() | ~~~~~~~~~~~~~~~~~~~~~~~ 1504 | ); | ~ ./libmaus2/wavelet/RlToHwtBase.hpp:1687:17: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtTerm(const std::vector >&, const std::string&, std::string, std::string, uint64_t, uint64_t, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’ 1687 | rlToHwtTerm(bwt,hwt,tmpprefix,H,bwtterm,p0r,numthreads); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/wavelet/RlToHwtTermRequest.hpp:118:67: required from ‘libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtTermRequest::dispatch() [with rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >]’ 118 | libmaus2::wavelet::RlToHwtBase::rlToHwtTerm(bwt,hwt,tmpprefix,huftreefilename,bwtterm,p0r,numthreads) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:926:102: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::ensureWaveletTreeGenerated(const libmaus2::suffixsort::BwtMergeBlockSortResult&, std::ostream*) [with input_types_type = libmaus2::suffixsort::Utf8InputTypes<32>; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::ostream = std::basic_ostream]’ 926 | libmaus2::wavelet::ImpCompactHuffmanWaveletTree::unique_ptr_type ptr(ureq->dispatch()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~ libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateUtf832.cpp:22:47: required from here 22 | template struct libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate< libmaus2::suffixsort::Utf8InputTypes<32> >; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:2048:90: warning: variable ‘l_numsyms0’ set but not used [-Wunused-but-set-variable=] 2048 | uint64_t l_numsyms0 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:2053:90: warning: variable ‘r_numsyms1’ set but not used [-Wunused-but-set-variable=] 2053 | uint64_t r_numsyms1 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1929:66: warning: variable ‘numsyms1’ set but not used [-Wunused-but-set-variable=] 1929 | uint64_t numsyms1 = 0; | ^~~~~~~~ libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateUtf832.cpp -o libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplateUtf832.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplateByte64.lo `test -f 'libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateByte64.cpp' || echo './'`libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateByte64.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateByte64.cpp -fPIC -DPIC -o libmaus2/suffixsort/bwtb3m/.libs/la-BwtMergeSortTemplateByte64.o In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/util/IntervalTree.hpp:25, from ./libmaus2/gamma/GammaRLDecoder.hpp:28, from ./libmaus2/gamma/GammaRLEncoder.hpp:29, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:24, from ./libmaus2/suffixsort/bwtb3m/BwtMergeComputeSampledSA.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateByte64.cpp:20: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/suffixsort/bwtb3m/GapArrayWrapper.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeIsaParallelBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:24: ./libmaus2/util/AtomicArray.hpp: At global scope: ./libmaus2/util/AtomicArray.hpp:45:43: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 45 | AtomicArray(AtomicArray const & O) = delete; | ^~~~~~~~~~~~~~~~~ ./libmaus2/util/AtomicArray.hpp:45:43: note: remove the ‘< >’ In file included from ./libmaus2/suffixsort/bwtb3m/BwtMergeIsaParallelBase.hpp:24: ./libmaus2/suffixsort/GapArrayByte.hpp: In member function ‘void libmaus2::suffixsort::GapArrayByte::flush()’: ./libmaus2/suffixsort/GapArrayByte.hpp:134:42: warning: variable ‘overflowcnt’ set but not used [-Wunused-but-set-variable=] 134 | uint64_t overflowcnt = 0; | ^~~~~~~~~~~ In file included from ./libmaus2/suffixsort/BwtMergeTempFileNameSet.hpp:27, from ./libmaus2/suffixsort/BwtMergeBlockSortResult.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:33: ./libmaus2/util/DirectoryStructure.hpp: In member function ‘std::string libmaus2::util::DirectoryStructure::printGenerate(std::ostream&, std::string, uint64_t) const’: ./libmaus2/util/DirectoryStructure.hpp:207:58: warning: variable ‘batchcnt’ set but not used [-Wunused-but-set-variable=] 207 | uint64_t batchcnt = 0; | ^~~~~~~~ ./libmaus2/util/DirectoryStructure.hpp: In member function ‘std::string libmaus2::util::DirectoryStructure::printRemove(std::ostream&, std::string, uint64_t) const’: ./libmaus2/util/DirectoryStructure.hpp:282:58: warning: variable ‘batchcnt’ set but not used [-Wunused-but-set-variable=] 282 | uint64_t batchcnt = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:183, from ./libmaus2/huffman/CanonicalEncoder.hpp:26, from ./libmaus2/huffman/RLEncoder.hpp:25, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22: ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 2]’: ./libmaus2/huffman/HuffmanSorting.hpp:860:55: required from here 860 | huffman::EncodeTable enctable ( root ); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:188: ./libmaus2/huffman/HuffmanSorting.hpp: In instantiation of ‘static void libmaus2::huffman::HuffmanSorting::uncompressHuffmanCoded(uint64_t*, uint64_t, uint64_t, uint64_t, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::HuffmanTreeNode*, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::EncodeTable&) [with unsigned int lookupwords = 2; uint64_t = long unsigned int]’: ./libmaus2/huffman/HuffmanSorting.hpp:1091:27: required from here 1091 | uncompressHuffmanCoded(acode.get(), 0 /* bit offset */, lowhalf /* syms */, firsthighsym, enctable,dectable,root.get(),dectable0,dectable1,enctable0,enctable1); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/huffman/HuffmanSorting.hpp:534:42: warning: variable ‘alldecoffset’ set but not used [-Wunused-but-set-variable=] 534 | uint64_t alldecoffset = highdecoffset; | ^~~~~~~~~~~~ ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 1]’: ./libmaus2/huffman/CanonicalEncoder.hpp:219:116: required from here 219 | return ::libmaus2::huffman::EncodeTable<1>::unique_ptr_type(new ::libmaus2::huffman::EncodeTable<1>(Ptree.get())); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/wavelet/RlToHwtBase.hpp:30, from ./libmaus2/wavelet/RlToHwtTermRequest.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:44: ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp: In instantiation of ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTree(libmaus2::autoarray::AutoArray&, const std::string&, const std::string&, const libmaus2::huffman::HuffmanTree*, uint64_t) [with bool radixsort = true; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’: ./libmaus2/suffixsort/BwtMergeBlockSortRequest.hpp:862:90: required from ‘libmaus2::suffixsort::BwtMergeBlockSortResult libmaus2::suffixsort::BwtMergeBlockSortRequest::sortBlock(std::ostream*) const [with input_types_type = libmaus2::suffixsort::ByteInputTypes<32>; rl_encoder = libmaus2::huffman::RLEncoderTemplate, libmaus2::bitio::FastWriteBitWriterTemplate >, 128, 255, false> > >; std::ostream = std::basic_ostream]’ 862 | ::libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTree( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 863 | UT,tmpfilenames.getHWT(),tmpfileprefix,uhnode.get(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 864 | 1/* num threads */ | ~~~~~~~~~~~~~~~~~~ 865 | ); | ~ ./libmaus2/suffixsort/BwtMergeBlockSortRequest.hpp:979:79: required from ‘std::string libmaus2::suffixsort::BwtMergeBlockSortRequest::dispatch(std::ostream*) const [with rl_encoder = libmaus2::huffman::RLEncoderTemplate, libmaus2::bitio::FastWriteBitWriterTemplate >, 128, 255, false> > >; std::string = std::__cxx11::basic_string; std::ostream = std::basic_ostream]’ 979 | result = sortBlock,rl_encoder>(logstr); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BaseBlockSortThread.hpp:128:118: required from here 128 | block->sortresult = ::libmaus2::suffixsort::BwtMergeBlockSortResult::load(block->sortreq.dispatch(logstr)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:874:90: warning: variable ‘l_numsyms0’ set but not used [-Wunused-but-set-variable=] 874 | uint64_t l_numsyms0 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:879:90: warning: variable ‘r_numsyms1’ set but not used [-Wunused-but-set-variable=] 879 | uint64_t r_numsyms1 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:755:66: warning: variable ‘numsyms1’ set but not used [-Wunused-but-set-variable=] 755 | uint64_t numsyms1 = 0; | ^~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp: In instantiation of ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRl(const std::string&, const std::string&, const std::string&, const libmaus2::huffman::HuffmanTree&, uint64_t, uint64_t) [with rl_decoder = libmaus2::huffman::RLDecoder; bool radixsort = true; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1368:123: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwt(const std::string&, const std::string&, std::string, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’ 1368 | ::libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRl( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 1369 | bwt,hwt,tmpprefix,H, | ~~~~~~~~~~~~~~~~~~~~ 1370 | utf8WaveletMaxPartMem() /* part size maximum */, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1371 | utf8WaveletMaxThreads()); | ~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:4191:65: required from ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeBwt(const libmaus2::suffixsort::bwtb3m::BwtMergeSortOptions&, std::ostream*) [with input_types_type = libmaus2::suffixsort::ByteInputTypes<64>; std::ostream = std::basic_ostream]’ 4191 | libmaus2::wavelet::RlToHwtBase::rlToHwt(options.outfn, outhwt, options.tmpfilenamebase+"_finalhwttmp",options.numthreads) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateByte64.cpp:22:47: required from here 22 | template struct libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate< libmaus2::suffixsort::ByteInputTypes<64> >; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1419:90: warning: variable ‘l_numsyms0’ set but not used [-Wunused-but-set-variable=] 1419 | uint64_t l_numsyms0 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1424:90: warning: variable ‘r_numsyms1’ set but not used [-Wunused-but-set-variable=] 1424 | uint64_t r_numsyms1 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1299:66: warning: variable ‘numsyms1’ set but not used [-Wunused-but-set-variable=] 1299 | uint64_t numsyms1 = 0; | ^~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp: In instantiation of ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRlWithTerm(const std::vector >&, const std::string&, const std::string&, const libmaus2::huffman::HuffmanTree&, uint64_t, uint64_t, uint64_t, uint64_t) [with rl_decoder = libmaus2::huffman::RLDecoder; bool radixsort = true; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1500:131: required from ‘static void libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtTerm(const std::vector >&, const std::string&, std::string, libmaus2::huffman::HuffmanTree&, uint64_t, uint64_t, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’ 1500 | ::libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRlWithTerm( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 1501 | bwt,hwt,tmpprefix,H,p0r,bwtterm, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1502 | utf8WaveletMaxPartMem() /* maximum part size */, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1503 | utf8WaveletMaxThreads() | ~~~~~~~~~~~~~~~~~~~~~~~ 1504 | ); | ~ ./libmaus2/wavelet/RlToHwtBase.hpp:1687:17: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtTerm(const std::vector >&, const std::string&, std::string, std::string, uint64_t, uint64_t, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’ 1687 | rlToHwtTerm(bwt,hwt,tmpprefix,H,bwtterm,p0r,numthreads); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/wavelet/RlToHwtTermRequest.hpp:118:67: required from ‘libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtTermRequest::dispatch() [with rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >]’ 118 | libmaus2::wavelet::RlToHwtBase::rlToHwtTerm(bwt,hwt,tmpprefix,huftreefilename,bwtterm,p0r,numthreads) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:926:102: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::ensureWaveletTreeGenerated(const libmaus2::suffixsort::BwtMergeBlockSortResult&, std::ostream*) [with input_types_type = libmaus2::suffixsort::ByteInputTypes<64>; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::ostream = std::basic_ostream]’ 926 | libmaus2::wavelet::ImpCompactHuffmanWaveletTree::unique_ptr_type ptr(ureq->dispatch()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~ libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateByte64.cpp:22:47: required from here 22 | template struct libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate< libmaus2::suffixsort::ByteInputTypes<64> >; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:2048:90: warning: variable ‘l_numsyms0’ set but not used [-Wunused-but-set-variable=] 2048 | uint64_t l_numsyms0 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:2053:90: warning: variable ‘r_numsyms1’ set but not used [-Wunused-but-set-variable=] 2053 | uint64_t r_numsyms1 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1929:66: warning: variable ‘numsyms1’ set but not used [-Wunused-but-set-variable=] 1929 | uint64_t numsyms1 = 0; | ^~~~~~~~ libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateByte64.cpp -o libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplateByte64.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplateLz464.lo `test -f 'libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateLz464.cpp' || echo './'`libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateLz464.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateLz464.cpp -fPIC -DPIC -o libmaus2/suffixsort/bwtb3m/.libs/la-BwtMergeSortTemplateLz464.o In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/util/IntervalTree.hpp:25, from ./libmaus2/gamma/GammaRLDecoder.hpp:28, from ./libmaus2/gamma/GammaRLEncoder.hpp:29, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:24, from ./libmaus2/suffixsort/bwtb3m/BwtMergeComputeSampledSA.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateLz464.cpp:20: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/suffixsort/bwtb3m/GapArrayWrapper.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeIsaParallelBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:24: ./libmaus2/util/AtomicArray.hpp: At global scope: ./libmaus2/util/AtomicArray.hpp:45:43: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 45 | AtomicArray(AtomicArray const & O) = delete; | ^~~~~~~~~~~~~~~~~ ./libmaus2/util/AtomicArray.hpp:45:43: note: remove the ‘< >’ In file included from ./libmaus2/suffixsort/bwtb3m/BwtMergeIsaParallelBase.hpp:24: ./libmaus2/suffixsort/GapArrayByte.hpp: In member function ‘void libmaus2::suffixsort::GapArrayByte::flush()’: ./libmaus2/suffixsort/GapArrayByte.hpp:134:42: warning: variable ‘overflowcnt’ set but not used [-Wunused-but-set-variable=] 134 | uint64_t overflowcnt = 0; | ^~~~~~~~~~~ In file included from ./libmaus2/suffixsort/BwtMergeTempFileNameSet.hpp:27, from ./libmaus2/suffixsort/BwtMergeBlockSortResult.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:33: ./libmaus2/util/DirectoryStructure.hpp: In member function ‘std::string libmaus2::util::DirectoryStructure::printGenerate(std::ostream&, std::string, uint64_t) const’: ./libmaus2/util/DirectoryStructure.hpp:207:58: warning: variable ‘batchcnt’ set but not used [-Wunused-but-set-variable=] 207 | uint64_t batchcnt = 0; | ^~~~~~~~ ./libmaus2/util/DirectoryStructure.hpp: In member function ‘std::string libmaus2::util::DirectoryStructure::printRemove(std::ostream&, std::string, uint64_t) const’: ./libmaus2/util/DirectoryStructure.hpp:282:58: warning: variable ‘batchcnt’ set but not used [-Wunused-but-set-variable=] 282 | uint64_t batchcnt = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:183, from ./libmaus2/huffman/CanonicalEncoder.hpp:26, from ./libmaus2/huffman/RLEncoder.hpp:25, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22: ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 2]’: ./libmaus2/huffman/HuffmanSorting.hpp:860:55: required from here 860 | huffman::EncodeTable enctable ( root ); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:188: ./libmaus2/huffman/HuffmanSorting.hpp: In instantiation of ‘static void libmaus2::huffman::HuffmanSorting::uncompressHuffmanCoded(uint64_t*, uint64_t, uint64_t, uint64_t, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::HuffmanTreeNode*, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::EncodeTable&) [with unsigned int lookupwords = 2; uint64_t = long unsigned int]’: ./libmaus2/huffman/HuffmanSorting.hpp:1091:27: required from here 1091 | uncompressHuffmanCoded(acode.get(), 0 /* bit offset */, lowhalf /* syms */, firsthighsym, enctable,dectable,root.get(),dectable0,dectable1,enctable0,enctable1); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/huffman/HuffmanSorting.hpp:534:42: warning: variable ‘alldecoffset’ set but not used [-Wunused-but-set-variable=] 534 | uint64_t alldecoffset = highdecoffset; | ^~~~~~~~~~~~ ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 1]’: ./libmaus2/huffman/CanonicalEncoder.hpp:219:116: required from here 219 | return ::libmaus2::huffman::EncodeTable<1>::unique_ptr_type(new ::libmaus2::huffman::EncodeTable<1>(Ptree.get())); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/wavelet/RlToHwtBase.hpp:30, from ./libmaus2/wavelet/RlToHwtTermRequest.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:44: ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp: In instantiation of ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTree(libmaus2::autoarray::AutoArray&, const std::string&, const std::string&, const libmaus2::huffman::HuffmanTree*, uint64_t) [with bool radixsort = true; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’: ./libmaus2/suffixsort/BwtMergeBlockSortRequest.hpp:862:90: required from ‘libmaus2::suffixsort::BwtMergeBlockSortResult libmaus2::suffixsort::BwtMergeBlockSortRequest::sortBlock(std::ostream*) const [with input_types_type = libmaus2::suffixsort::ByteInputTypes<32>; rl_encoder = libmaus2::huffman::RLEncoderTemplate, libmaus2::bitio::FastWriteBitWriterTemplate >, 128, 255, false> > >; std::ostream = std::basic_ostream]’ 862 | ::libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTree( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 863 | UT,tmpfilenames.getHWT(),tmpfileprefix,uhnode.get(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 864 | 1/* num threads */ | ~~~~~~~~~~~~~~~~~~ 865 | ); | ~ ./libmaus2/suffixsort/BwtMergeBlockSortRequest.hpp:979:79: required from ‘std::string libmaus2::suffixsort::BwtMergeBlockSortRequest::dispatch(std::ostream*) const [with rl_encoder = libmaus2::huffman::RLEncoderTemplate, libmaus2::bitio::FastWriteBitWriterTemplate >, 128, 255, false> > >; std::string = std::__cxx11::basic_string; std::ostream = std::basic_ostream]’ 979 | result = sortBlock,rl_encoder>(logstr); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BaseBlockSortThread.hpp:128:118: required from here 128 | block->sortresult = ::libmaus2::suffixsort::BwtMergeBlockSortResult::load(block->sortreq.dispatch(logstr)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:874:90: warning: variable ‘l_numsyms0’ set but not used [-Wunused-but-set-variable=] 874 | uint64_t l_numsyms0 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:879:90: warning: variable ‘r_numsyms1’ set but not used [-Wunused-but-set-variable=] 879 | uint64_t r_numsyms1 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:755:66: warning: variable ‘numsyms1’ set but not used [-Wunused-but-set-variable=] 755 | uint64_t numsyms1 = 0; | ^~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp: In instantiation of ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRl(const std::string&, const std::string&, const std::string&, const libmaus2::huffman::HuffmanTree&, uint64_t, uint64_t) [with rl_decoder = libmaus2::huffman::RLDecoder; bool radixsort = true; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1368:123: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwt(const std::string&, const std::string&, std::string, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’ 1368 | ::libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRl( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 1369 | bwt,hwt,tmpprefix,H, | ~~~~~~~~~~~~~~~~~~~~ 1370 | utf8WaveletMaxPartMem() /* part size maximum */, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1371 | utf8WaveletMaxThreads()); | ~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:4191:65: required from ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeBwt(const libmaus2::suffixsort::bwtb3m::BwtMergeSortOptions&, std::ostream*) [with input_types_type = libmaus2::suffixsort::Lz4InputTypes<64>; std::ostream = std::basic_ostream]’ 4191 | libmaus2::wavelet::RlToHwtBase::rlToHwt(options.outfn, outhwt, options.tmpfilenamebase+"_finalhwttmp",options.numthreads) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateLz464.cpp:22:47: required from here 22 | template struct libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate< libmaus2::suffixsort::Lz4InputTypes<64> >; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1419:90: warning: variable ‘l_numsyms0’ set but not used [-Wunused-but-set-variable=] 1419 | uint64_t l_numsyms0 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1424:90: warning: variable ‘r_numsyms1’ set but not used [-Wunused-but-set-variable=] 1424 | uint64_t r_numsyms1 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1299:66: warning: variable ‘numsyms1’ set but not used [-Wunused-but-set-variable=] 1299 | uint64_t numsyms1 = 0; | ^~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp: In instantiation of ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRlWithTerm(const std::vector >&, const std::string&, const std::string&, const libmaus2::huffman::HuffmanTree&, uint64_t, uint64_t, uint64_t, uint64_t) [with rl_decoder = libmaus2::huffman::RLDecoder; bool radixsort = true; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1500:131: required from ‘static void libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtTerm(const std::vector >&, const std::string&, std::string, libmaus2::huffman::HuffmanTree&, uint64_t, uint64_t, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’ 1500 | ::libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRlWithTerm( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 1501 | bwt,hwt,tmpprefix,H,p0r,bwtterm, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1502 | utf8WaveletMaxPartMem() /* maximum part size */, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1503 | utf8WaveletMaxThreads() | ~~~~~~~~~~~~~~~~~~~~~~~ 1504 | ); | ~ ./libmaus2/wavelet/RlToHwtBase.hpp:1687:17: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtTerm(const std::vector >&, const std::string&, std::string, std::string, uint64_t, uint64_t, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’ 1687 | rlToHwtTerm(bwt,hwt,tmpprefix,H,bwtterm,p0r,numthreads); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/wavelet/RlToHwtTermRequest.hpp:118:67: required from ‘libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtTermRequest::dispatch() [with rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >]’ 118 | libmaus2::wavelet::RlToHwtBase::rlToHwtTerm(bwt,hwt,tmpprefix,huftreefilename,bwtterm,p0r,numthreads) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:926:102: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::ensureWaveletTreeGenerated(const libmaus2::suffixsort::BwtMergeBlockSortResult&, std::ostream*) [with input_types_type = libmaus2::suffixsort::Lz4InputTypes<64>; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::ostream = std::basic_ostream]’ 926 | libmaus2::wavelet::ImpCompactHuffmanWaveletTree::unique_ptr_type ptr(ureq->dispatch()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~ libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateLz464.cpp:22:47: required from here 22 | template struct libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate< libmaus2::suffixsort::Lz4InputTypes<64> >; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:2048:90: warning: variable ‘l_numsyms0’ set but not used [-Wunused-but-set-variable=] 2048 | uint64_t l_numsyms0 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:2053:90: warning: variable ‘r_numsyms1’ set but not used [-Wunused-but-set-variable=] 2053 | uint64_t r_numsyms1 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1929:66: warning: variable ‘numsyms1’ set but not used [-Wunused-but-set-variable=] 1929 | uint64_t numsyms1 = 0; | ^~~~~~~~ libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateLz464.cpp -o libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplateLz464.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplatePacTerm64.lo `test -f 'libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplatePacTerm64.cpp' || echo './'`libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplatePacTerm64.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplatePacTerm64.cpp -fPIC -DPIC -o libmaus2/suffixsort/bwtb3m/.libs/la-BwtMergeSortTemplatePacTerm64.o In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/util/IntervalTree.hpp:25, from ./libmaus2/gamma/GammaRLDecoder.hpp:28, from ./libmaus2/gamma/GammaRLEncoder.hpp:29, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:24, from ./libmaus2/suffixsort/bwtb3m/BwtMergeComputeSampledSA.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplatePacTerm64.cpp:20: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/suffixsort/bwtb3m/GapArrayWrapper.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeIsaParallelBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:24: ./libmaus2/util/AtomicArray.hpp: At global scope: ./libmaus2/util/AtomicArray.hpp:45:43: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 45 | AtomicArray(AtomicArray const & O) = delete; | ^~~~~~~~~~~~~~~~~ ./libmaus2/util/AtomicArray.hpp:45:43: note: remove the ‘< >’ In file included from ./libmaus2/suffixsort/bwtb3m/BwtMergeIsaParallelBase.hpp:24: ./libmaus2/suffixsort/GapArrayByte.hpp: In member function ‘void libmaus2::suffixsort::GapArrayByte::flush()’: ./libmaus2/suffixsort/GapArrayByte.hpp:134:42: warning: variable ‘overflowcnt’ set but not used [-Wunused-but-set-variable=] 134 | uint64_t overflowcnt = 0; | ^~~~~~~~~~~ In file included from ./libmaus2/suffixsort/BwtMergeTempFileNameSet.hpp:27, from ./libmaus2/suffixsort/BwtMergeBlockSortResult.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:33: ./libmaus2/util/DirectoryStructure.hpp: In member function ‘std::string libmaus2::util::DirectoryStructure::printGenerate(std::ostream&, std::string, uint64_t) const’: ./libmaus2/util/DirectoryStructure.hpp:207:58: warning: variable ‘batchcnt’ set but not used [-Wunused-but-set-variable=] 207 | uint64_t batchcnt = 0; | ^~~~~~~~ ./libmaus2/util/DirectoryStructure.hpp: In member function ‘std::string libmaus2::util::DirectoryStructure::printRemove(std::ostream&, std::string, uint64_t) const’: ./libmaus2/util/DirectoryStructure.hpp:282:58: warning: variable ‘batchcnt’ set but not used [-Wunused-but-set-variable=] 282 | uint64_t batchcnt = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:183, from ./libmaus2/huffman/CanonicalEncoder.hpp:26, from ./libmaus2/huffman/RLEncoder.hpp:25, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22: ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 2]’: ./libmaus2/huffman/HuffmanSorting.hpp:860:55: required from here 860 | huffman::EncodeTable enctable ( root ); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:188: ./libmaus2/huffman/HuffmanSorting.hpp: In instantiation of ‘static void libmaus2::huffman::HuffmanSorting::uncompressHuffmanCoded(uint64_t*, uint64_t, uint64_t, uint64_t, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::HuffmanTreeNode*, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::EncodeTable&) [with unsigned int lookupwords = 2; uint64_t = long unsigned int]’: ./libmaus2/huffman/HuffmanSorting.hpp:1091:27: required from here 1091 | uncompressHuffmanCoded(acode.get(), 0 /* bit offset */, lowhalf /* syms */, firsthighsym, enctable,dectable,root.get(),dectable0,dectable1,enctable0,enctable1); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/huffman/HuffmanSorting.hpp:534:42: warning: variable ‘alldecoffset’ set but not used [-Wunused-but-set-variable=] 534 | uint64_t alldecoffset = highdecoffset; | ^~~~~~~~~~~~ ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 1]’: ./libmaus2/huffman/CanonicalEncoder.hpp:219:116: required from here 219 | return ::libmaus2::huffman::EncodeTable<1>::unique_ptr_type(new ::libmaus2::huffman::EncodeTable<1>(Ptree.get())); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/wavelet/RlToHwtBase.hpp:30, from ./libmaus2/wavelet/RlToHwtTermRequest.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:44: ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp: In instantiation of ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTree(libmaus2::autoarray::AutoArray&, const std::string&, const std::string&, const libmaus2::huffman::HuffmanTree*, uint64_t) [with bool radixsort = true; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’: ./libmaus2/suffixsort/BwtMergeBlockSortRequest.hpp:862:90: required from ‘libmaus2::suffixsort::BwtMergeBlockSortResult libmaus2::suffixsort::BwtMergeBlockSortRequest::sortBlock(std::ostream*) const [with input_types_type = libmaus2::suffixsort::ByteInputTypes<32>; rl_encoder = libmaus2::huffman::RLEncoderTemplate, libmaus2::bitio::FastWriteBitWriterTemplate >, 128, 255, false> > >; std::ostream = std::basic_ostream]’ 862 | ::libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTree( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 863 | UT,tmpfilenames.getHWT(),tmpfileprefix,uhnode.get(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 864 | 1/* num threads */ | ~~~~~~~~~~~~~~~~~~ 865 | ); | ~ ./libmaus2/suffixsort/BwtMergeBlockSortRequest.hpp:979:79: required from ‘std::string libmaus2::suffixsort::BwtMergeBlockSortRequest::dispatch(std::ostream*) const [with rl_encoder = libmaus2::huffman::RLEncoderTemplate, libmaus2::bitio::FastWriteBitWriterTemplate >, 128, 255, false> > >; std::string = std::__cxx11::basic_string; std::ostream = std::basic_ostream]’ 979 | result = sortBlock,rl_encoder>(logstr); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BaseBlockSortThread.hpp:128:118: required from here 128 | block->sortresult = ::libmaus2::suffixsort::BwtMergeBlockSortResult::load(block->sortreq.dispatch(logstr)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:874:90: warning: variable ‘l_numsyms0’ set but not used [-Wunused-but-set-variable=] 874 | uint64_t l_numsyms0 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:879:90: warning: variable ‘r_numsyms1’ set but not used [-Wunused-but-set-variable=] 879 | uint64_t r_numsyms1 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:755:66: warning: variable ‘numsyms1’ set but not used [-Wunused-but-set-variable=] 755 | uint64_t numsyms1 = 0; | ^~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp: In instantiation of ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRl(const std::string&, const std::string&, const std::string&, const libmaus2::huffman::HuffmanTree&, uint64_t, uint64_t) [with rl_decoder = libmaus2::huffman::RLDecoder; bool radixsort = true; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1368:123: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwt(const std::string&, const std::string&, std::string, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’ 1368 | ::libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRl( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 1369 | bwt,hwt,tmpprefix,H, | ~~~~~~~~~~~~~~~~~~~~ 1370 | utf8WaveletMaxPartMem() /* part size maximum */, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1371 | utf8WaveletMaxThreads()); | ~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:4191:65: required from ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeBwt(const libmaus2::suffixsort::bwtb3m::BwtMergeSortOptions&, std::ostream*) [with input_types_type = libmaus2::suffixsort::PacTermInputTypes<64>; std::ostream = std::basic_ostream]’ 4191 | libmaus2::wavelet::RlToHwtBase::rlToHwt(options.outfn, outhwt, options.tmpfilenamebase+"_finalhwttmp",options.numthreads) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplatePacTerm64.cpp:22:47: required from here 22 | template struct libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate< libmaus2::suffixsort::PacTermInputTypes<64> >; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1419:90: warning: variable ‘l_numsyms0’ set but not used [-Wunused-but-set-variable=] 1419 | uint64_t l_numsyms0 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1424:90: warning: variable ‘r_numsyms1’ set but not used [-Wunused-but-set-variable=] 1424 | uint64_t r_numsyms1 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1299:66: warning: variable ‘numsyms1’ set but not used [-Wunused-but-set-variable=] 1299 | uint64_t numsyms1 = 0; | ^~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp: In instantiation of ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRlWithTerm(const std::vector >&, const std::string&, const std::string&, const libmaus2::huffman::HuffmanTree&, uint64_t, uint64_t, uint64_t, uint64_t) [with rl_decoder = libmaus2::huffman::RLDecoder; bool radixsort = true; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1500:131: required from ‘static void libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtTerm(const std::vector >&, const std::string&, std::string, libmaus2::huffman::HuffmanTree&, uint64_t, uint64_t, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’ 1500 | ::libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRlWithTerm( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 1501 | bwt,hwt,tmpprefix,H,p0r,bwtterm, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1502 | utf8WaveletMaxPartMem() /* maximum part size */, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1503 | utf8WaveletMaxThreads() | ~~~~~~~~~~~~~~~~~~~~~~~ 1504 | ); | ~ ./libmaus2/wavelet/RlToHwtBase.hpp:1687:17: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtTerm(const std::vector >&, const std::string&, std::string, std::string, uint64_t, uint64_t, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’ 1687 | rlToHwtTerm(bwt,hwt,tmpprefix,H,bwtterm,p0r,numthreads); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/wavelet/RlToHwtTermRequest.hpp:118:67: required from ‘libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtTermRequest::dispatch() [with rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >]’ 118 | libmaus2::wavelet::RlToHwtBase::rlToHwtTerm(bwt,hwt,tmpprefix,huftreefilename,bwtterm,p0r,numthreads) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:926:102: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::ensureWaveletTreeGenerated(const libmaus2::suffixsort::BwtMergeBlockSortResult&, std::ostream*) [with input_types_type = libmaus2::suffixsort::PacTermInputTypes<64>; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::ostream = std::basic_ostream]’ 926 | libmaus2::wavelet::ImpCompactHuffmanWaveletTree::unique_ptr_type ptr(ureq->dispatch()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~ libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplatePacTerm64.cpp:22:47: required from here 22 | template struct libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate< libmaus2::suffixsort::PacTermInputTypes<64> >; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:2048:90: warning: variable ‘l_numsyms0’ set but not used [-Wunused-but-set-variable=] 2048 | uint64_t l_numsyms0 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:2053:90: warning: variable ‘r_numsyms1’ set but not used [-Wunused-but-set-variable=] 2053 | uint64_t r_numsyms1 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1929:66: warning: variable ‘numsyms1’ set but not used [-Wunused-but-set-variable=] 1929 | uint64_t numsyms1 = 0; | ^~~~~~~~ libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplatePacTerm64.cpp -o libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplatePacTerm64.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplateCompact64.lo `test -f 'libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateCompact64.cpp' || echo './'`libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateCompact64.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateCompact64.cpp -fPIC -DPIC -o libmaus2/suffixsort/bwtb3m/.libs/la-BwtMergeSortTemplateCompact64.o In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/util/IntervalTree.hpp:25, from ./libmaus2/gamma/GammaRLDecoder.hpp:28, from ./libmaus2/gamma/GammaRLEncoder.hpp:29, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:24, from ./libmaus2/suffixsort/bwtb3m/BwtMergeComputeSampledSA.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateCompact64.cpp:20: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/suffixsort/bwtb3m/GapArrayWrapper.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeIsaParallelBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:24: ./libmaus2/util/AtomicArray.hpp: At global scope: ./libmaus2/util/AtomicArray.hpp:45:43: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 45 | AtomicArray(AtomicArray const & O) = delete; | ^~~~~~~~~~~~~~~~~ ./libmaus2/util/AtomicArray.hpp:45:43: note: remove the ‘< >’ In file included from ./libmaus2/suffixsort/bwtb3m/BwtMergeIsaParallelBase.hpp:24: ./libmaus2/suffixsort/GapArrayByte.hpp: In member function ‘void libmaus2::suffixsort::GapArrayByte::flush()’: ./libmaus2/suffixsort/GapArrayByte.hpp:134:42: warning: variable ‘overflowcnt’ set but not used [-Wunused-but-set-variable=] 134 | uint64_t overflowcnt = 0; | ^~~~~~~~~~~ In file included from ./libmaus2/suffixsort/BwtMergeTempFileNameSet.hpp:27, from ./libmaus2/suffixsort/BwtMergeBlockSortResult.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:33: ./libmaus2/util/DirectoryStructure.hpp: In member function ‘std::string libmaus2::util::DirectoryStructure::printGenerate(std::ostream&, std::string, uint64_t) const’: ./libmaus2/util/DirectoryStructure.hpp:207:58: warning: variable ‘batchcnt’ set but not used [-Wunused-but-set-variable=] 207 | uint64_t batchcnt = 0; | ^~~~~~~~ ./libmaus2/util/DirectoryStructure.hpp: In member function ‘std::string libmaus2::util::DirectoryStructure::printRemove(std::ostream&, std::string, uint64_t) const’: ./libmaus2/util/DirectoryStructure.hpp:282:58: warning: variable ‘batchcnt’ set but not used [-Wunused-but-set-variable=] 282 | uint64_t batchcnt = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:183, from ./libmaus2/huffman/CanonicalEncoder.hpp:26, from ./libmaus2/huffman/RLEncoder.hpp:25, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22: ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 2]’: ./libmaus2/huffman/HuffmanSorting.hpp:860:55: required from here 860 | huffman::EncodeTable enctable ( root ); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:188: ./libmaus2/huffman/HuffmanSorting.hpp: In instantiation of ‘static void libmaus2::huffman::HuffmanSorting::uncompressHuffmanCoded(uint64_t*, uint64_t, uint64_t, uint64_t, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::HuffmanTreeNode*, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::EncodeTable&) [with unsigned int lookupwords = 2; uint64_t = long unsigned int]’: ./libmaus2/huffman/HuffmanSorting.hpp:1091:27: required from here 1091 | uncompressHuffmanCoded(acode.get(), 0 /* bit offset */, lowhalf /* syms */, firsthighsym, enctable,dectable,root.get(),dectable0,dectable1,enctable0,enctable1); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/huffman/HuffmanSorting.hpp:534:42: warning: variable ‘alldecoffset’ set but not used [-Wunused-but-set-variable=] 534 | uint64_t alldecoffset = highdecoffset; | ^~~~~~~~~~~~ ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 1]’: ./libmaus2/huffman/CanonicalEncoder.hpp:219:116: required from here 219 | return ::libmaus2::huffman::EncodeTable<1>::unique_ptr_type(new ::libmaus2::huffman::EncodeTable<1>(Ptree.get())); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/wavelet/RlToHwtBase.hpp:30, from ./libmaus2/wavelet/RlToHwtTermRequest.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:44: ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp: In instantiation of ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTree(libmaus2::autoarray::AutoArray&, const std::string&, const std::string&, const libmaus2::huffman::HuffmanTree*, uint64_t) [with bool radixsort = true; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’: ./libmaus2/suffixsort/BwtMergeBlockSortRequest.hpp:862:90: required from ‘libmaus2::suffixsort::BwtMergeBlockSortResult libmaus2::suffixsort::BwtMergeBlockSortRequest::sortBlock(std::ostream*) const [with input_types_type = libmaus2::suffixsort::ByteInputTypes<32>; rl_encoder = libmaus2::huffman::RLEncoderTemplate, libmaus2::bitio::FastWriteBitWriterTemplate >, 128, 255, false> > >; std::ostream = std::basic_ostream]’ 862 | ::libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTree( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 863 | UT,tmpfilenames.getHWT(),tmpfileprefix,uhnode.get(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 864 | 1/* num threads */ | ~~~~~~~~~~~~~~~~~~ 865 | ); | ~ ./libmaus2/suffixsort/BwtMergeBlockSortRequest.hpp:979:79: required from ‘std::string libmaus2::suffixsort::BwtMergeBlockSortRequest::dispatch(std::ostream*) const [with rl_encoder = libmaus2::huffman::RLEncoderTemplate, libmaus2::bitio::FastWriteBitWriterTemplate >, 128, 255, false> > >; std::string = std::__cxx11::basic_string; std::ostream = std::basic_ostream]’ 979 | result = sortBlock,rl_encoder>(logstr); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BaseBlockSortThread.hpp:128:118: required from here 128 | block->sortresult = ::libmaus2::suffixsort::BwtMergeBlockSortResult::load(block->sortreq.dispatch(logstr)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:874:90: warning: variable ‘l_numsyms0’ set but not used [-Wunused-but-set-variable=] 874 | uint64_t l_numsyms0 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:879:90: warning: variable ‘r_numsyms1’ set but not used [-Wunused-but-set-variable=] 879 | uint64_t r_numsyms1 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:755:66: warning: variable ‘numsyms1’ set but not used [-Wunused-but-set-variable=] 755 | uint64_t numsyms1 = 0; | ^~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp: In instantiation of ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRl(const std::string&, const std::string&, const std::string&, const libmaus2::huffman::HuffmanTree&, uint64_t, uint64_t) [with rl_decoder = libmaus2::huffman::RLDecoder; bool radixsort = true; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1368:123: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwt(const std::string&, const std::string&, std::string, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’ 1368 | ::libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRl( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 1369 | bwt,hwt,tmpprefix,H, | ~~~~~~~~~~~~~~~~~~~~ 1370 | utf8WaveletMaxPartMem() /* part size maximum */, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1371 | utf8WaveletMaxThreads()); | ~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:4191:65: required from ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeBwt(const libmaus2::suffixsort::bwtb3m::BwtMergeSortOptions&, std::ostream*) [with input_types_type = libmaus2::suffixsort::CompactInputTypes<64>; std::ostream = std::basic_ostream]’ 4191 | libmaus2::wavelet::RlToHwtBase::rlToHwt(options.outfn, outhwt, options.tmpfilenamebase+"_finalhwttmp",options.numthreads) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateCompact64.cpp:22:47: required from here 22 | template struct libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate< libmaus2::suffixsort::CompactInputTypes<64> >; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1419:90: warning: variable ‘l_numsyms0’ set but not used [-Wunused-but-set-variable=] 1419 | uint64_t l_numsyms0 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1424:90: warning: variable ‘r_numsyms1’ set but not used [-Wunused-but-set-variable=] 1424 | uint64_t r_numsyms1 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1299:66: warning: variable ‘numsyms1’ set but not used [-Wunused-but-set-variable=] 1299 | uint64_t numsyms1 = 0; | ^~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp: In instantiation of ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRlWithTerm(const std::vector >&, const std::string&, const std::string&, const libmaus2::huffman::HuffmanTree&, uint64_t, uint64_t, uint64_t, uint64_t) [with rl_decoder = libmaus2::huffman::RLDecoder; bool radixsort = true; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1500:131: required from ‘static void libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtTerm(const std::vector >&, const std::string&, std::string, libmaus2::huffman::HuffmanTree&, uint64_t, uint64_t, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’ 1500 | ::libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRlWithTerm( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 1501 | bwt,hwt,tmpprefix,H,p0r,bwtterm, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1502 | utf8WaveletMaxPartMem() /* maximum part size */, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1503 | utf8WaveletMaxThreads() | ~~~~~~~~~~~~~~~~~~~~~~~ 1504 | ); | ~ ./libmaus2/wavelet/RlToHwtBase.hpp:1687:17: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtTerm(const std::vector >&, const std::string&, std::string, std::string, uint64_t, uint64_t, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’ 1687 | rlToHwtTerm(bwt,hwt,tmpprefix,H,bwtterm,p0r,numthreads); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/wavelet/RlToHwtTermRequest.hpp:118:67: required from ‘libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtTermRequest::dispatch() [with rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >]’ 118 | libmaus2::wavelet::RlToHwtBase::rlToHwtTerm(bwt,hwt,tmpprefix,huftreefilename,bwtterm,p0r,numthreads) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:926:102: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::ensureWaveletTreeGenerated(const libmaus2::suffixsort::BwtMergeBlockSortResult&, std::ostream*) [with input_types_type = libmaus2::suffixsort::CompactInputTypes<64>; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::ostream = std::basic_ostream]’ 926 | libmaus2::wavelet::ImpCompactHuffmanWaveletTree::unique_ptr_type ptr(ureq->dispatch()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~ libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateCompact64.cpp:22:47: required from here 22 | template struct libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate< libmaus2::suffixsort::CompactInputTypes<64> >; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:2048:90: warning: variable ‘l_numsyms0’ set but not used [-Wunused-but-set-variable=] 2048 | uint64_t l_numsyms0 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:2053:90: warning: variable ‘r_numsyms1’ set but not used [-Wunused-but-set-variable=] 2053 | uint64_t r_numsyms1 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1929:66: warning: variable ‘numsyms1’ set but not used [-Wunused-but-set-variable=] 1929 | uint64_t numsyms1 = 0; | ^~~~~~~~ libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateCompact64.cpp -o libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplateCompact64.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplatePac64.lo `test -f 'libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplatePac64.cpp' || echo './'`libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplatePac64.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplatePac64.cpp -fPIC -DPIC -o libmaus2/suffixsort/bwtb3m/.libs/la-BwtMergeSortTemplatePac64.o In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/util/IntervalTree.hpp:25, from ./libmaus2/gamma/GammaRLDecoder.hpp:28, from ./libmaus2/gamma/GammaRLEncoder.hpp:29, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:24, from ./libmaus2/suffixsort/bwtb3m/BwtMergeComputeSampledSA.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplatePac64.cpp:20: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/suffixsort/bwtb3m/GapArrayWrapper.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeIsaParallelBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:24: ./libmaus2/util/AtomicArray.hpp: At global scope: ./libmaus2/util/AtomicArray.hpp:45:43: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 45 | AtomicArray(AtomicArray const & O) = delete; | ^~~~~~~~~~~~~~~~~ ./libmaus2/util/AtomicArray.hpp:45:43: note: remove the ‘< >’ In file included from ./libmaus2/suffixsort/bwtb3m/BwtMergeIsaParallelBase.hpp:24: ./libmaus2/suffixsort/GapArrayByte.hpp: In member function ‘void libmaus2::suffixsort::GapArrayByte::flush()’: ./libmaus2/suffixsort/GapArrayByte.hpp:134:42: warning: variable ‘overflowcnt’ set but not used [-Wunused-but-set-variable=] 134 | uint64_t overflowcnt = 0; | ^~~~~~~~~~~ In file included from ./libmaus2/suffixsort/BwtMergeTempFileNameSet.hpp:27, from ./libmaus2/suffixsort/BwtMergeBlockSortResult.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:33: ./libmaus2/util/DirectoryStructure.hpp: In member function ‘std::string libmaus2::util::DirectoryStructure::printGenerate(std::ostream&, std::string, uint64_t) const’: ./libmaus2/util/DirectoryStructure.hpp:207:58: warning: variable ‘batchcnt’ set but not used [-Wunused-but-set-variable=] 207 | uint64_t batchcnt = 0; | ^~~~~~~~ ./libmaus2/util/DirectoryStructure.hpp: In member function ‘std::string libmaus2::util::DirectoryStructure::printRemove(std::ostream&, std::string, uint64_t) const’: ./libmaus2/util/DirectoryStructure.hpp:282:58: warning: variable ‘batchcnt’ set but not used [-Wunused-but-set-variable=] 282 | uint64_t batchcnt = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:183, from ./libmaus2/huffman/CanonicalEncoder.hpp:26, from ./libmaus2/huffman/RLEncoder.hpp:25, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22: ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 2]’: ./libmaus2/huffman/HuffmanSorting.hpp:860:55: required from here 860 | huffman::EncodeTable enctable ( root ); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:188: ./libmaus2/huffman/HuffmanSorting.hpp: In instantiation of ‘static void libmaus2::huffman::HuffmanSorting::uncompressHuffmanCoded(uint64_t*, uint64_t, uint64_t, uint64_t, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::HuffmanTreeNode*, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::EncodeTable&) [with unsigned int lookupwords = 2; uint64_t = long unsigned int]’: ./libmaus2/huffman/HuffmanSorting.hpp:1091:27: required from here 1091 | uncompressHuffmanCoded(acode.get(), 0 /* bit offset */, lowhalf /* syms */, firsthighsym, enctable,dectable,root.get(),dectable0,dectable1,enctable0,enctable1); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/huffman/HuffmanSorting.hpp:534:42: warning: variable ‘alldecoffset’ set but not used [-Wunused-but-set-variable=] 534 | uint64_t alldecoffset = highdecoffset; | ^~~~~~~~~~~~ ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 1]’: ./libmaus2/huffman/CanonicalEncoder.hpp:219:116: required from here 219 | return ::libmaus2::huffman::EncodeTable<1>::unique_ptr_type(new ::libmaus2::huffman::EncodeTable<1>(Ptree.get())); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/wavelet/RlToHwtBase.hpp:30, from ./libmaus2/wavelet/RlToHwtTermRequest.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:44: ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp: In instantiation of ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTree(libmaus2::autoarray::AutoArray&, const std::string&, const std::string&, const libmaus2::huffman::HuffmanTree*, uint64_t) [with bool radixsort = true; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’: ./libmaus2/suffixsort/BwtMergeBlockSortRequest.hpp:862:90: required from ‘libmaus2::suffixsort::BwtMergeBlockSortResult libmaus2::suffixsort::BwtMergeBlockSortRequest::sortBlock(std::ostream*) const [with input_types_type = libmaus2::suffixsort::ByteInputTypes<32>; rl_encoder = libmaus2::huffman::RLEncoderTemplate, libmaus2::bitio::FastWriteBitWriterTemplate >, 128, 255, false> > >; std::ostream = std::basic_ostream]’ 862 | ::libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTree( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 863 | UT,tmpfilenames.getHWT(),tmpfileprefix,uhnode.get(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 864 | 1/* num threads */ | ~~~~~~~~~~~~~~~~~~ 865 | ); | ~ ./libmaus2/suffixsort/BwtMergeBlockSortRequest.hpp:979:79: required from ‘std::string libmaus2::suffixsort::BwtMergeBlockSortRequest::dispatch(std::ostream*) const [with rl_encoder = libmaus2::huffman::RLEncoderTemplate, libmaus2::bitio::FastWriteBitWriterTemplate >, 128, 255, false> > >; std::string = std::__cxx11::basic_string; std::ostream = std::basic_ostream]’ 979 | result = sortBlock,rl_encoder>(logstr); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BaseBlockSortThread.hpp:128:118: required from here 128 | block->sortresult = ::libmaus2::suffixsort::BwtMergeBlockSortResult::load(block->sortreq.dispatch(logstr)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:874:90: warning: variable ‘l_numsyms0’ set but not used [-Wunused-but-set-variable=] 874 | uint64_t l_numsyms0 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:879:90: warning: variable ‘r_numsyms1’ set but not used [-Wunused-but-set-variable=] 879 | uint64_t r_numsyms1 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:755:66: warning: variable ‘numsyms1’ set but not used [-Wunused-but-set-variable=] 755 | uint64_t numsyms1 = 0; | ^~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp: In instantiation of ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRl(const std::string&, const std::string&, const std::string&, const libmaus2::huffman::HuffmanTree&, uint64_t, uint64_t) [with rl_decoder = libmaus2::huffman::RLDecoder; bool radixsort = true; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1368:123: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwt(const std::string&, const std::string&, std::string, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’ 1368 | ::libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRl( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 1369 | bwt,hwt,tmpprefix,H, | ~~~~~~~~~~~~~~~~~~~~ 1370 | utf8WaveletMaxPartMem() /* part size maximum */, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1371 | utf8WaveletMaxThreads()); | ~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:4191:65: required from ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeBwt(const libmaus2::suffixsort::bwtb3m::BwtMergeSortOptions&, std::ostream*) [with input_types_type = libmaus2::suffixsort::PacInputTypes<64>; std::ostream = std::basic_ostream]’ 4191 | libmaus2::wavelet::RlToHwtBase::rlToHwt(options.outfn, outhwt, options.tmpfilenamebase+"_finalhwttmp",options.numthreads) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplatePac64.cpp:22:47: required from here 22 | template struct libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate< libmaus2::suffixsort::PacInputTypes<64> >; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1419:90: warning: variable ‘l_numsyms0’ set but not used [-Wunused-but-set-variable=] 1419 | uint64_t l_numsyms0 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1424:90: warning: variable ‘r_numsyms1’ set but not used [-Wunused-but-set-variable=] 1424 | uint64_t r_numsyms1 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1299:66: warning: variable ‘numsyms1’ set but not used [-Wunused-but-set-variable=] 1299 | uint64_t numsyms1 = 0; | ^~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp: In instantiation of ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRlWithTerm(const std::vector >&, const std::string&, const std::string&, const libmaus2::huffman::HuffmanTree&, uint64_t, uint64_t, uint64_t, uint64_t) [with rl_decoder = libmaus2::huffman::RLDecoder; bool radixsort = true; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1500:131: required from ‘static void libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtTerm(const std::vector >&, const std::string&, std::string, libmaus2::huffman::HuffmanTree&, uint64_t, uint64_t, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’ 1500 | ::libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRlWithTerm( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 1501 | bwt,hwt,tmpprefix,H,p0r,bwtterm, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1502 | utf8WaveletMaxPartMem() /* maximum part size */, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1503 | utf8WaveletMaxThreads() | ~~~~~~~~~~~~~~~~~~~~~~~ 1504 | ); | ~ ./libmaus2/wavelet/RlToHwtBase.hpp:1687:17: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtTerm(const std::vector >&, const std::string&, std::string, std::string, uint64_t, uint64_t, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’ 1687 | rlToHwtTerm(bwt,hwt,tmpprefix,H,bwtterm,p0r,numthreads); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/wavelet/RlToHwtTermRequest.hpp:118:67: required from ‘libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtTermRequest::dispatch() [with rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >]’ 118 | libmaus2::wavelet::RlToHwtBase::rlToHwtTerm(bwt,hwt,tmpprefix,huftreefilename,bwtterm,p0r,numthreads) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:926:102: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::ensureWaveletTreeGenerated(const libmaus2::suffixsort::BwtMergeBlockSortResult&, std::ostream*) [with input_types_type = libmaus2::suffixsort::PacInputTypes<64>; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::ostream = std::basic_ostream]’ 926 | libmaus2::wavelet::ImpCompactHuffmanWaveletTree::unique_ptr_type ptr(ureq->dispatch()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~ libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplatePac64.cpp:22:47: required from here 22 | template struct libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate< libmaus2::suffixsort::PacInputTypes<64> >; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:2048:90: warning: variable ‘l_numsyms0’ set but not used [-Wunused-but-set-variable=] 2048 | uint64_t l_numsyms0 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:2053:90: warning: variable ‘r_numsyms1’ set but not used [-Wunused-but-set-variable=] 2053 | uint64_t r_numsyms1 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1929:66: warning: variable ‘numsyms1’ set but not used [-Wunused-but-set-variable=] 1929 | uint64_t numsyms1 = 0; | ^~~~~~~~ libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplatePac64.cpp -o libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplatePac64.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplateUtf864.lo `test -f 'libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateUtf864.cpp' || echo './'`libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateUtf864.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateUtf864.cpp -fPIC -DPIC -o libmaus2/suffixsort/bwtb3m/.libs/la-BwtMergeSortTemplateUtf864.o In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/util/IntervalTree.hpp:25, from ./libmaus2/gamma/GammaRLDecoder.hpp:28, from ./libmaus2/gamma/GammaRLEncoder.hpp:29, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:24, from ./libmaus2/suffixsort/bwtb3m/BwtMergeComputeSampledSA.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateUtf864.cpp:20: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/suffixsort/bwtb3m/GapArrayWrapper.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeIsaParallelBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:24: ./libmaus2/util/AtomicArray.hpp: At global scope: ./libmaus2/util/AtomicArray.hpp:45:43: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 45 | AtomicArray(AtomicArray const & O) = delete; | ^~~~~~~~~~~~~~~~~ ./libmaus2/util/AtomicArray.hpp:45:43: note: remove the ‘< >’ In file included from ./libmaus2/suffixsort/bwtb3m/BwtMergeIsaParallelBase.hpp:24: ./libmaus2/suffixsort/GapArrayByte.hpp: In member function ‘void libmaus2::suffixsort::GapArrayByte::flush()’: ./libmaus2/suffixsort/GapArrayByte.hpp:134:42: warning: variable ‘overflowcnt’ set but not used [-Wunused-but-set-variable=] 134 | uint64_t overflowcnt = 0; | ^~~~~~~~~~~ In file included from ./libmaus2/suffixsort/BwtMergeTempFileNameSet.hpp:27, from ./libmaus2/suffixsort/BwtMergeBlockSortResult.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:33: ./libmaus2/util/DirectoryStructure.hpp: In member function ‘std::string libmaus2::util::DirectoryStructure::printGenerate(std::ostream&, std::string, uint64_t) const’: ./libmaus2/util/DirectoryStructure.hpp:207:58: warning: variable ‘batchcnt’ set but not used [-Wunused-but-set-variable=] 207 | uint64_t batchcnt = 0; | ^~~~~~~~ ./libmaus2/util/DirectoryStructure.hpp: In member function ‘std::string libmaus2::util::DirectoryStructure::printRemove(std::ostream&, std::string, uint64_t) const’: ./libmaus2/util/DirectoryStructure.hpp:282:58: warning: variable ‘batchcnt’ set but not used [-Wunused-but-set-variable=] 282 | uint64_t batchcnt = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:183, from ./libmaus2/huffman/CanonicalEncoder.hpp:26, from ./libmaus2/huffman/RLEncoder.hpp:25, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22: ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 2]’: ./libmaus2/huffman/HuffmanSorting.hpp:860:55: required from here 860 | huffman::EncodeTable enctable ( root ); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:188: ./libmaus2/huffman/HuffmanSorting.hpp: In instantiation of ‘static void libmaus2::huffman::HuffmanSorting::uncompressHuffmanCoded(uint64_t*, uint64_t, uint64_t, uint64_t, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::HuffmanTreeNode*, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::EncodeTable&) [with unsigned int lookupwords = 2; uint64_t = long unsigned int]’: ./libmaus2/huffman/HuffmanSorting.hpp:1091:27: required from here 1091 | uncompressHuffmanCoded(acode.get(), 0 /* bit offset */, lowhalf /* syms */, firsthighsym, enctable,dectable,root.get(),dectable0,dectable1,enctable0,enctable1); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/huffman/HuffmanSorting.hpp:534:42: warning: variable ‘alldecoffset’ set but not used [-Wunused-but-set-variable=] 534 | uint64_t alldecoffset = highdecoffset; | ^~~~~~~~~~~~ ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 1]’: ./libmaus2/huffman/CanonicalEncoder.hpp:219:116: required from here 219 | return ::libmaus2::huffman::EncodeTable<1>::unique_ptr_type(new ::libmaus2::huffman::EncodeTable<1>(Ptree.get())); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/wavelet/RlToHwtBase.hpp:30, from ./libmaus2/wavelet/RlToHwtTermRequest.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:44: ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp: In instantiation of ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTree(libmaus2::autoarray::AutoArray&, const std::string&, const std::string&, const libmaus2::huffman::HuffmanTree*, uint64_t) [with bool radixsort = true; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’: ./libmaus2/suffixsort/BwtMergeBlockSortRequest.hpp:862:90: required from ‘libmaus2::suffixsort::BwtMergeBlockSortResult libmaus2::suffixsort::BwtMergeBlockSortRequest::sortBlock(std::ostream*) const [with input_types_type = libmaus2::suffixsort::ByteInputTypes<32>; rl_encoder = libmaus2::huffman::RLEncoderTemplate, libmaus2::bitio::FastWriteBitWriterTemplate >, 128, 255, false> > >; std::ostream = std::basic_ostream]’ 862 | ::libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTree( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 863 | UT,tmpfilenames.getHWT(),tmpfileprefix,uhnode.get(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 864 | 1/* num threads */ | ~~~~~~~~~~~~~~~~~~ 865 | ); | ~ ./libmaus2/suffixsort/BwtMergeBlockSortRequest.hpp:979:79: required from ‘std::string libmaus2::suffixsort::BwtMergeBlockSortRequest::dispatch(std::ostream*) const [with rl_encoder = libmaus2::huffman::RLEncoderTemplate, libmaus2::bitio::FastWriteBitWriterTemplate >, 128, 255, false> > >; std::string = std::__cxx11::basic_string; std::ostream = std::basic_ostream]’ 979 | result = sortBlock,rl_encoder>(logstr); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BaseBlockSortThread.hpp:128:118: required from here 128 | block->sortresult = ::libmaus2::suffixsort::BwtMergeBlockSortResult::load(block->sortreq.dispatch(logstr)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:874:90: warning: variable ‘l_numsyms0’ set but not used [-Wunused-but-set-variable=] 874 | uint64_t l_numsyms0 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:879:90: warning: variable ‘r_numsyms1’ set but not used [-Wunused-but-set-variable=] 879 | uint64_t r_numsyms1 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:755:66: warning: variable ‘numsyms1’ set but not used [-Wunused-but-set-variable=] 755 | uint64_t numsyms1 = 0; | ^~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp: In instantiation of ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRl(const std::string&, const std::string&, const std::string&, const libmaus2::huffman::HuffmanTree&, uint64_t, uint64_t) [with rl_decoder = libmaus2::huffman::RLDecoder; bool radixsort = true; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1368:123: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwt(const std::string&, const std::string&, std::string, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’ 1368 | ::libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRl( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 1369 | bwt,hwt,tmpprefix,H, | ~~~~~~~~~~~~~~~~~~~~ 1370 | utf8WaveletMaxPartMem() /* part size maximum */, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1371 | utf8WaveletMaxThreads()); | ~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:4191:65: required from ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeBwt(const libmaus2::suffixsort::bwtb3m::BwtMergeSortOptions&, std::ostream*) [with input_types_type = libmaus2::suffixsort::Utf8InputTypes<64>; std::ostream = std::basic_ostream]’ 4191 | libmaus2::wavelet::RlToHwtBase::rlToHwt(options.outfn, outhwt, options.tmpfilenamebase+"_finalhwttmp",options.numthreads) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateUtf864.cpp:22:47: required from here 22 | template struct libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate< libmaus2::suffixsort::Utf8InputTypes<64> >; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1419:90: warning: variable ‘l_numsyms0’ set but not used [-Wunused-but-set-variable=] 1419 | uint64_t l_numsyms0 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1424:90: warning: variable ‘r_numsyms1’ set but not used [-Wunused-but-set-variable=] 1424 | uint64_t r_numsyms1 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1299:66: warning: variable ‘numsyms1’ set but not used [-Wunused-but-set-variable=] 1299 | uint64_t numsyms1 = 0; | ^~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp: In instantiation of ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRlWithTerm(const std::vector >&, const std::string&, const std::string&, const libmaus2::huffman::HuffmanTree&, uint64_t, uint64_t, uint64_t, uint64_t) [with rl_decoder = libmaus2::huffman::RLDecoder; bool radixsort = true; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1500:131: required from ‘static void libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtTerm(const std::vector >&, const std::string&, std::string, libmaus2::huffman::HuffmanTree&, uint64_t, uint64_t, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’ 1500 | ::libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRlWithTerm( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 1501 | bwt,hwt,tmpprefix,H,p0r,bwtterm, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1502 | utf8WaveletMaxPartMem() /* maximum part size */, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1503 | utf8WaveletMaxThreads() | ~~~~~~~~~~~~~~~~~~~~~~~ 1504 | ); | ~ ./libmaus2/wavelet/RlToHwtBase.hpp:1687:17: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtTerm(const std::vector >&, const std::string&, std::string, std::string, uint64_t, uint64_t, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’ 1687 | rlToHwtTerm(bwt,hwt,tmpprefix,H,bwtterm,p0r,numthreads); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/wavelet/RlToHwtTermRequest.hpp:118:67: required from ‘libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtTermRequest::dispatch() [with rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >]’ 118 | libmaus2::wavelet::RlToHwtBase::rlToHwtTerm(bwt,hwt,tmpprefix,huftreefilename,bwtterm,p0r,numthreads) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:926:102: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::ensureWaveletTreeGenerated(const libmaus2::suffixsort::BwtMergeBlockSortResult&, std::ostream*) [with input_types_type = libmaus2::suffixsort::Utf8InputTypes<64>; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::ostream = std::basic_ostream]’ 926 | libmaus2::wavelet::ImpCompactHuffmanWaveletTree::unique_ptr_type ptr(ureq->dispatch()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~ libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateUtf864.cpp:22:47: required from here 22 | template struct libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate< libmaus2::suffixsort::Utf8InputTypes<64> >; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:2048:90: warning: variable ‘l_numsyms0’ set but not used [-Wunused-but-set-variable=] 2048 | uint64_t l_numsyms0 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:2053:90: warning: variable ‘r_numsyms1’ set but not used [-Wunused-but-set-variable=] 2053 | uint64_t r_numsyms1 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1929:66: warning: variable ‘numsyms1’ set but not used [-Wunused-but-set-variable=] 1929 | uint64_t numsyms1 = 0; | ^~~~~~~~ libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateUtf864.cpp -o libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplateUtf864.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/suffixsort/bwtb3m/la-BwtMergeComputeSampledSA.lo `test -f 'libmaus2/suffixsort/bwtb3m/BwtMergeComputeSampledSA.cpp' || echo './'`libmaus2/suffixsort/bwtb3m/BwtMergeComputeSampledSA.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtMergeComputeSampledSA.cpp -fPIC -DPIC -o libmaus2/suffixsort/bwtb3m/.libs/la-BwtMergeComputeSampledSA.o In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/util/IntervalTree.hpp:25, from ./libmaus2/gamma/GammaRLDecoder.hpp:28, from ./libmaus2/gamma/GammaRLEncoder.hpp:29, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:24, from ./libmaus2/suffixsort/bwtb3m/BwtMergeComputeSampledSA.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeComputeSampledSA.cpp:20: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/huffman/huffman.hpp:183, from ./libmaus2/huffman/CanonicalEncoder.hpp:26, from ./libmaus2/huffman/RLEncoder.hpp:25, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22: ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 2]’: ./libmaus2/huffman/HuffmanSorting.hpp:860:55: required from here 860 | huffman::EncodeTable enctable ( root ); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:188: ./libmaus2/huffman/HuffmanSorting.hpp: In instantiation of ‘static void libmaus2::huffman::HuffmanSorting::uncompressHuffmanCoded(uint64_t*, uint64_t, uint64_t, uint64_t, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::HuffmanTreeNode*, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::EncodeTable&) [with unsigned int lookupwords = 2; uint64_t = long unsigned int]’: ./libmaus2/huffman/HuffmanSorting.hpp:1091:27: required from here 1091 | uncompressHuffmanCoded(acode.get(), 0 /* bit offset */, lowhalf /* syms */, firsthighsym, enctable,dectable,root.get(),dectable0,dectable1,enctable0,enctable1); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/huffman/HuffmanSorting.hpp:534:42: warning: variable ‘alldecoffset’ set but not used [-Wunused-but-set-variable=] 534 | uint64_t alldecoffset = highdecoffset; | ^~~~~~~~~~~~ ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 1]’: ./libmaus2/huffman/CanonicalEncoder.hpp:219:116: required from here 219 | return ::libmaus2::huffman::EncodeTable<1>::unique_ptr_type(new ::libmaus2::huffman::EncodeTable<1>(Ptree.get())); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtMergeComputeSampledSA.cpp -o libmaus2/suffixsort/bwtb3m/la-BwtMergeComputeSampledSA.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/parallel/la-SimpleThreadWorkPackage.lo `test -f 'libmaus2/parallel/SimpleThreadWorkPackage.cpp' || echo './'`libmaus2/parallel/SimpleThreadWorkPackage.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/parallel/SimpleThreadWorkPackage.cpp -fPIC -DPIC -o libmaus2/parallel/.libs/la-SimpleThreadWorkPackage.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/parallel/SimpleThreadWorkPackage.cpp -o libmaus2/parallel/la-SimpleThreadWorkPackage.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/parallel/la-StdSemaphore.lo `test -f 'libmaus2/parallel/StdSemaphore.cpp' || echo './'`libmaus2/parallel/StdSemaphore.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/parallel/StdSemaphore.cpp -fPIC -DPIC -o libmaus2/parallel/.libs/la-StdSemaphore.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/parallel/StdSemaphore.cpp -o libmaus2/parallel/la-StdSemaphore.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/parallel/la-StdMutex.lo `test -f 'libmaus2/parallel/StdMutex.cpp' || echo './'`libmaus2/parallel/StdMutex.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/parallel/StdMutex.cpp -fPIC -DPIC -o libmaus2/parallel/.libs/la-StdMutex.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/parallel/StdMutex.cpp -o libmaus2/parallel/la-StdMutex.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/parallel/la-StdSpinLock.lo `test -f 'libmaus2/parallel/StdSpinLock.cpp' || echo './'`libmaus2/parallel/StdSpinLock.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/parallel/StdSpinLock.cpp -fPIC -DPIC -o libmaus2/parallel/.libs/la-StdSpinLock.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/parallel/StdSpinLock.cpp -o libmaus2/parallel/la-StdSpinLock.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/parallel/la-StaticInitialisation.lo `test -f 'libmaus2/parallel/StaticInitialisation.cpp' || echo './'`libmaus2/parallel/StaticInitialisation.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/parallel/StaticInitialisation.cpp -fPIC -DPIC -o libmaus2/parallel/.libs/la-StaticInitialisation.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/parallel/StaticInitialisation.cpp -o libmaus2/parallel/la-StaticInitialisation.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/autoarray/la-AutoArray.lo `test -f 'libmaus2/autoarray/AutoArray.cpp' || echo './'`libmaus2/autoarray/AutoArray.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/autoarray/AutoArray.cpp -fPIC -DPIC -o libmaus2/autoarray/.libs/la-AutoArray.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/autoarray/AutoArray.cpp -o libmaus2/autoarray/la-AutoArray.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/stacktrace/la-StackTrace.lo `test -f 'libmaus2/stacktrace/StackTrace.cpp' || echo './'`libmaus2/stacktrace/StackTrace.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/stacktrace/StackTrace.cpp -fPIC -DPIC -o libmaus2/stacktrace/.libs/la-StackTrace.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/stacktrace/StackTrace.cpp -o libmaus2/stacktrace/la-StackTrace.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/stacktrace/la-StackTraceBufferContainer.lo `test -f 'libmaus2/stacktrace/StackTraceBufferContainer.cpp' || echo './'`libmaus2/stacktrace/StackTraceBufferContainer.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/stacktrace/StackTraceBufferContainer.cpp -fPIC -DPIC -o libmaus2/stacktrace/.libs/la-StackTraceBufferContainer.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/stacktrace/StackTraceBufferContainer.cpp -o libmaus2/stacktrace/la-StackTraceBufferContainer.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/posix/la-PosixExecute.lo `test -f 'libmaus2/posix/PosixExecute.cpp' || echo './'`libmaus2/posix/PosixExecute.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/posix/PosixExecute.cpp -fPIC -DPIC -o libmaus2/posix/.libs/la-PosixExecute.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/posix/PosixExecute.cpp -o libmaus2/posix/la-PosixExecute.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/posix/la-PosixFunctions.lo `test -f 'libmaus2/posix/PosixFunctions.cpp' || echo './'`libmaus2/posix/PosixFunctions.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/posix/PosixFunctions.cpp -fPIC -DPIC -o libmaus2/posix/.libs/la-PosixFunctions.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/posix/PosixFunctions.cpp -o libmaus2/posix/la-PosixFunctions.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -version-info 2:813:0 -L/lib -Wl,-z,relro -Wl,-z,now -o libmaus2_posix.la -rpath /usr/lib/powerpc64le-linux-gnu libmaus2/posix/la-PosixExecute.lo libmaus2/posix/la-PosixFunctions.lo -lz libtool: link: powerpc64le-linux-gnu-g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc-cross/powerpc64le-linux-gnu/16/../../../../powerpc64le-linux-gnu/lib/../lib/crti.o /usr/lib/gcc-cross/powerpc64le-linux-gnu/16/crtbeginS.o libmaus2/posix/.libs/la-PosixExecute.o libmaus2/posix/.libs/la-PosixFunctions.o -L/lib -lz -L/usr/lib/gcc-cross/powerpc64le-linux-gnu/16 -L/usr/lib/gcc-cross/powerpc64le-linux-gnu/16/../../../../powerpc64le-linux-gnu/lib/../lib -L/lib/powerpc64le-linux-gnu -L/lib/../lib -L/usr/lib/powerpc64le-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc-cross/powerpc64le-linux-gnu/16/../../../../powerpc64le-linux-gnu/lib -L/usr/lib -lstdc++ -lm -lgcc_s -latomic_asneeded -lc -lgcc_s /usr/lib/gcc-cross/powerpc64le-linux-gnu/16/crtendS.o /usr/lib/gcc-cross/powerpc64le-linux-gnu/16/../../../../powerpc64le-linux-gnu/lib/../lib/crtn.o -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-z -Wl,relro -Wl,-z -Wl,now -pthread -fopenmp -Wl,-soname -Wl,libmaus2_posix.so.2 -o .libs/libmaus2_posix.so.2.0.813 libtool: link: (cd ".libs" && rm -f "libmaus2_posix.so.2" && ln -s "libmaus2_posix.so.2.0.813" "libmaus2_posix.so.2") libtool: link: (cd ".libs" && rm -f "libmaus2_posix.so" && ln -s "libmaus2_posix.so.2.0.813" "libmaus2_posix.so") libtool: link: powerpc64le-linux-gnu-ar cr .libs/libmaus2_posix.a libmaus2/posix/la-PosixExecute.o libmaus2/posix/la-PosixFunctions.o libtool: link: powerpc64le-linux-gnu-ranlib .libs/libmaus2_posix.a libtool: link: ( cd ".libs" && rm -f "libmaus2_posix.la" && ln -s "../libmaus2_posix.la" "libmaus2_posix.la" ) /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/demangle/la-Demangle.lo `test -f 'libmaus2/demangle/Demangle.cpp' || echo './'`libmaus2/demangle/Demangle.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/demangle/Demangle.cpp -fPIC -DPIC -o libmaus2/demangle/.libs/la-Demangle.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/demangle/Demangle.cpp -o libmaus2/demangle/la-Demangle.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -version-info 2:813:0 -L/lib -Wl,-z,relro -Wl,-z,now -o libmaus2_demangle.la -rpath /usr/lib/powerpc64le-linux-gnu libmaus2/demangle/la-Demangle.lo -lz libtool: link: powerpc64le-linux-gnu-g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc-cross/powerpc64le-linux-gnu/16/../../../../powerpc64le-linux-gnu/lib/../lib/crti.o /usr/lib/gcc-cross/powerpc64le-linux-gnu/16/crtbeginS.o libmaus2/demangle/.libs/la-Demangle.o -L/lib -lz -L/usr/lib/gcc-cross/powerpc64le-linux-gnu/16 -L/usr/lib/gcc-cross/powerpc64le-linux-gnu/16/../../../../powerpc64le-linux-gnu/lib/../lib -L/lib/powerpc64le-linux-gnu -L/lib/../lib -L/usr/lib/powerpc64le-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc-cross/powerpc64le-linux-gnu/16/../../../../powerpc64le-linux-gnu/lib -L/usr/lib -lstdc++ -lm -lgcc_s -latomic_asneeded -lc -lgcc_s /usr/lib/gcc-cross/powerpc64le-linux-gnu/16/crtendS.o /usr/lib/gcc-cross/powerpc64le-linux-gnu/16/../../../../powerpc64le-linux-gnu/lib/../lib/crtn.o -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-z -Wl,relro -Wl,-z -Wl,now -pthread -fopenmp -Wl,-soname -Wl,libmaus2_demangle.so.2 -o .libs/libmaus2_demangle.so.2.0.813 libtool: link: (cd ".libs" && rm -f "libmaus2_demangle.so.2" && ln -s "libmaus2_demangle.so.2.0.813" "libmaus2_demangle.so.2") libtool: link: (cd ".libs" && rm -f "libmaus2_demangle.so" && ln -s "libmaus2_demangle.so.2.0.813" "libmaus2_demangle.so") libtool: link: powerpc64le-linux-gnu-ar cr .libs/libmaus2_demangle.a libmaus2/demangle/la-Demangle.o libtool: link: powerpc64le-linux-gnu-ranlib .libs/libmaus2_demangle.a libtool: link: ( cd ".libs" && rm -f "libmaus2_demangle.la" && ln -s "../libmaus2_demangle.la" "libmaus2_demangle.la" ) /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -version-info 2:813:0 -L/lib -Wl,-z,relro -Wl,-z,now -o libmaus2_stacktrace.la -rpath /usr/lib/powerpc64le-linux-gnu libmaus2/stacktrace/la-StackTrace.lo libmaus2/stacktrace/la-StackTraceBufferContainer.lo libmaus2_posix.la libmaus2_demangle.la -lz libtool: link: powerpc64le-linux-gnu-g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc-cross/powerpc64le-linux-gnu/16/../../../../powerpc64le-linux-gnu/lib/../lib/crti.o /usr/lib/gcc-cross/powerpc64le-linux-gnu/16/crtbeginS.o libmaus2/stacktrace/.libs/la-StackTrace.o libmaus2/stacktrace/.libs/la-StackTraceBufferContainer.o -Wl,-rpath -Wl,/build/reproducible-path/libmaus2-2.0.813+ds/src/.libs -L/lib ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so -lz -L/usr/lib/gcc-cross/powerpc64le-linux-gnu/16 -L/usr/lib/gcc-cross/powerpc64le-linux-gnu/16/../../../../powerpc64le-linux-gnu/lib/../lib -L/lib/powerpc64le-linux-gnu -L/lib/../lib -L/usr/lib/powerpc64le-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc-cross/powerpc64le-linux-gnu/16/../../../../powerpc64le-linux-gnu/lib -L/usr/lib -lstdc++ -lm -lgcc_s -latomic_asneeded -lc -lgcc_s /usr/lib/gcc-cross/powerpc64le-linux-gnu/16/crtendS.o /usr/lib/gcc-cross/powerpc64le-linux-gnu/16/../../../../powerpc64le-linux-gnu/lib/../lib/crtn.o -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-z -Wl,relro -Wl,-z -Wl,now -pthread -fopenmp -Wl,-soname -Wl,libmaus2_stacktrace.so.2 -o .libs/libmaus2_stacktrace.so.2.0.813 libtool: link: (cd ".libs" && rm -f "libmaus2_stacktrace.so.2" && ln -s "libmaus2_stacktrace.so.2.0.813" "libmaus2_stacktrace.so.2") libtool: link: (cd ".libs" && rm -f "libmaus2_stacktrace.so" && ln -s "libmaus2_stacktrace.so.2.0.813" "libmaus2_stacktrace.so") libtool: link: powerpc64le-linux-gnu-ar cr .libs/libmaus2_stacktrace.a libmaus2/stacktrace/la-StackTrace.o libmaus2/stacktrace/la-StackTraceBufferContainer.o libtool: link: powerpc64le-linux-gnu-ranlib .libs/libmaus2_stacktrace.a libtool: link: ( cd ".libs" && rm -f "libmaus2_stacktrace.la" && ln -s "../libmaus2_stacktrace.la" "libmaus2_stacktrace.la" ) /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/arch/la-I386Features.lo `test -f 'libmaus2/arch/I386Features.cpp' || echo './'`libmaus2/arch/I386Features.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/arch/I386Features.cpp -fPIC -DPIC -o libmaus2/arch/.libs/la-I386Features.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/arch/I386Features.cpp -o libmaus2/arch/la-I386Features.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/arch/la-CacheLineSize.lo `test -f 'libmaus2/arch/CacheLineSize.cpp' || echo './'`libmaus2/arch/CacheLineSize.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/arch/CacheLineSize.cpp -fPIC -DPIC -o libmaus2/arch/.libs/la-CacheLineSize.o libmaus2/arch/CacheLineSize.cpp: In function ‘uint64_t getCacheLineSizeLocal()’: libmaus2/arch/CacheLineSize.cpp:50:30: warning: format ‘%d’ expects argument of type ‘int*’, but argument 3 has type ‘uint64_t*’ {aka ‘long unsigned int*’} [-Wformat=] 50 | fscanf(fp, "%d", &i); | ~^ ~~ | | | | | uint64_t* {aka long unsigned int*} | int* | %ld libmaus2/arch/CacheLineSize.cpp:50:23: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 50 | fscanf(fp, "%d", &i); | ~~~~~~^~~~~~~~~~~~~~ libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/arch/CacheLineSize.cpp -o libmaus2/arch/la-CacheLineSize.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/arch/la-PageSize.lo `test -f 'libmaus2/arch/PageSize.cpp' || echo './'`libmaus2/arch/PageSize.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/arch/PageSize.cpp -fPIC -DPIC -o libmaus2/arch/.libs/la-PageSize.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/arch/PageSize.cpp -o libmaus2/arch/la-PageSize.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -version-info 2:813:0 -L/lib -Wl,-z,relro -Wl,-z,now -o libmaus2_arch.la -rpath /usr/lib/powerpc64le-linux-gnu libmaus2/arch/la-I386Features.lo libmaus2/arch/la-CacheLineSize.lo libmaus2/arch/la-PageSize.lo -lz libtool: link: powerpc64le-linux-gnu-g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc-cross/powerpc64le-linux-gnu/16/../../../../powerpc64le-linux-gnu/lib/../lib/crti.o /usr/lib/gcc-cross/powerpc64le-linux-gnu/16/crtbeginS.o libmaus2/arch/.libs/la-I386Features.o libmaus2/arch/.libs/la-CacheLineSize.o libmaus2/arch/.libs/la-PageSize.o -L/lib -lz -L/usr/lib/gcc-cross/powerpc64le-linux-gnu/16 -L/usr/lib/gcc-cross/powerpc64le-linux-gnu/16/../../../../powerpc64le-linux-gnu/lib/../lib -L/lib/powerpc64le-linux-gnu -L/lib/../lib -L/usr/lib/powerpc64le-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc-cross/powerpc64le-linux-gnu/16/../../../../powerpc64le-linux-gnu/lib -L/usr/lib -lstdc++ -lm -lgcc_s -latomic_asneeded -lc -lgcc_s /usr/lib/gcc-cross/powerpc64le-linux-gnu/16/crtendS.o /usr/lib/gcc-cross/powerpc64le-linux-gnu/16/../../../../powerpc64le-linux-gnu/lib/../lib/crtn.o -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-z -Wl,relro -Wl,-z -Wl,now -pthread -fopenmp -Wl,-soname -Wl,libmaus2_arch.so.2 -o .libs/libmaus2_arch.so.2.0.813 libtool: link: (cd ".libs" && rm -f "libmaus2_arch.so.2" && ln -s "libmaus2_arch.so.2.0.813" "libmaus2_arch.so.2") libtool: link: (cd ".libs" && rm -f "libmaus2_arch.so" && ln -s "libmaus2_arch.so.2.0.813" "libmaus2_arch.so") libtool: link: powerpc64le-linux-gnu-ar cr .libs/libmaus2_arch.a libmaus2/arch/la-I386Features.o libmaus2/arch/la-CacheLineSize.o libmaus2/arch/la-PageSize.o libtool: link: powerpc64le-linux-gnu-ranlib .libs/libmaus2_arch.a libtool: link: ( cd ".libs" && rm -f "libmaus2_arch.la" && ln -s "../libmaus2_arch.la" "libmaus2_arch.la" ) /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -version-info 2:813:0 -L/lib -Wl,-z,relro -Wl,-z,now -o libmaus2_autoarray.la -rpath /usr/lib/powerpc64le-linux-gnu libmaus2/autoarray/la-AutoArray.lo libmaus2_stacktrace.la libmaus2_demangle.la libmaus2_arch.la -lz libtool: link: powerpc64le-linux-gnu-g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc-cross/powerpc64le-linux-gnu/16/../../../../powerpc64le-linux-gnu/lib/../lib/crti.o /usr/lib/gcc-cross/powerpc64le-linux-gnu/16/crtbeginS.o libmaus2/autoarray/.libs/la-AutoArray.o -Wl,-rpath -Wl,/build/reproducible-path/libmaus2-2.0.813+ds/src/.libs -L/lib ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so -lz -L/usr/lib/gcc-cross/powerpc64le-linux-gnu/16 -L/usr/lib/gcc-cross/powerpc64le-linux-gnu/16/../../../../powerpc64le-linux-gnu/lib/../lib -L/lib/powerpc64le-linux-gnu -L/lib/../lib -L/usr/lib/powerpc64le-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc-cross/powerpc64le-linux-gnu/16/../../../../powerpc64le-linux-gnu/lib -L/usr/lib -lstdc++ -lm -lgcc_s -latomic_asneeded -lc -lgcc_s /usr/lib/gcc-cross/powerpc64le-linux-gnu/16/crtendS.o /usr/lib/gcc-cross/powerpc64le-linux-gnu/16/../../../../powerpc64le-linux-gnu/lib/../lib/crtn.o -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-z -Wl,relro -Wl,-z -Wl,now -pthread -fopenmp -Wl,-soname -Wl,libmaus2_autoarray.so.2 -o .libs/libmaus2_autoarray.so.2.0.813 libtool: link: (cd ".libs" && rm -f "libmaus2_autoarray.so.2" && ln -s "libmaus2_autoarray.so.2.0.813" "libmaus2_autoarray.so.2") libtool: link: (cd ".libs" && rm -f "libmaus2_autoarray.so" && ln -s "libmaus2_autoarray.so.2.0.813" "libmaus2_autoarray.so") libtool: link: powerpc64le-linux-gnu-ar cr .libs/libmaus2_autoarray.a libmaus2/autoarray/la-AutoArray.o libtool: link: powerpc64le-linux-gnu-ranlib .libs/libmaus2_autoarray.a libtool: link: ( cd ".libs" && rm -f "libmaus2_autoarray.la" && ln -s "../libmaus2_autoarray.la" "libmaus2_autoarray.la" ) /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/exception/la-LibMausException.lo `test -f 'libmaus2/exception/LibMausException.cpp' || echo './'`libmaus2/exception/LibMausException.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/exception/LibMausException.cpp -fPIC -DPIC -o libmaus2/exception/.libs/la-LibMausException.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/exception/LibMausException.cpp -o libmaus2/exception/la-LibMausException.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -version-info 2:813:0 -L/lib -Wl,-z,relro -Wl,-z,now -o libmaus2_exception.la -rpath /usr/lib/powerpc64le-linux-gnu libmaus2/exception/la-LibMausException.lo libmaus2_stacktrace.la libmaus2_demangle.la -lz libtool: link: powerpc64le-linux-gnu-g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc-cross/powerpc64le-linux-gnu/16/../../../../powerpc64le-linux-gnu/lib/../lib/crti.o /usr/lib/gcc-cross/powerpc64le-linux-gnu/16/crtbeginS.o libmaus2/exception/.libs/la-LibMausException.o -Wl,-rpath -Wl,/build/reproducible-path/libmaus2-2.0.813+ds/src/.libs -L/lib ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_demangle.so -lz -L/usr/lib/gcc-cross/powerpc64le-linux-gnu/16 -L/usr/lib/gcc-cross/powerpc64le-linux-gnu/16/../../../../powerpc64le-linux-gnu/lib/../lib -L/lib/powerpc64le-linux-gnu -L/lib/../lib -L/usr/lib/powerpc64le-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc-cross/powerpc64le-linux-gnu/16/../../../../powerpc64le-linux-gnu/lib -L/usr/lib -lstdc++ -lm -lgcc_s -latomic_asneeded -lc -lgcc_s /usr/lib/gcc-cross/powerpc64le-linux-gnu/16/crtendS.o /usr/lib/gcc-cross/powerpc64le-linux-gnu/16/../../../../powerpc64le-linux-gnu/lib/../lib/crtn.o -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-z -Wl,relro -Wl,-z -Wl,now -pthread -fopenmp -Wl,-soname -Wl,libmaus2_exception.so.2 -o .libs/libmaus2_exception.so.2.0.813 libtool: link: (cd ".libs" && rm -f "libmaus2_exception.so.2" && ln -s "libmaus2_exception.so.2.0.813" "libmaus2_exception.so.2") libtool: link: (cd ".libs" && rm -f "libmaus2_exception.so" && ln -s "libmaus2_exception.so.2.0.813" "libmaus2_exception.so") libtool: link: powerpc64le-linux-gnu-ar cr .libs/libmaus2_exception.a libmaus2/exception/la-LibMausException.o libtool: link: powerpc64le-linux-gnu-ranlib .libs/libmaus2_exception.a libtool: link: ( cd ".libs" && rm -f "libmaus2_exception.la" && ln -s "../libmaus2_exception.la" "libmaus2_exception.la" ) /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -version-info 2:813:0 -L/lib -Wl,-z,relro -Wl,-z,now -o libmaus2_parallel.la -rpath /usr/lib/powerpc64le-linux-gnu libmaus2/parallel/la-SimpleThreadWorkPackage.lo libmaus2/parallel/la-StdSemaphore.lo libmaus2/parallel/la-StdMutex.lo libmaus2/parallel/la-StdSpinLock.lo libmaus2/parallel/la-StaticInitialisation.lo libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_demangle.la libmaus2_arch.la -lz libtool: link: powerpc64le-linux-gnu-g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc-cross/powerpc64le-linux-gnu/16/../../../../powerpc64le-linux-gnu/lib/../lib/crti.o /usr/lib/gcc-cross/powerpc64le-linux-gnu/16/crtbeginS.o libmaus2/parallel/.libs/la-SimpleThreadWorkPackage.o libmaus2/parallel/.libs/la-StdSemaphore.o libmaus2/parallel/.libs/la-StdMutex.o libmaus2/parallel/.libs/la-StdSpinLock.o libmaus2/parallel/.libs/la-StaticInitialisation.o -Wl,-rpath -Wl,/build/reproducible-path/libmaus2-2.0.813+ds/src/.libs -L/lib ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so -lz -L/usr/lib/gcc-cross/powerpc64le-linux-gnu/16 -L/usr/lib/gcc-cross/powerpc64le-linux-gnu/16/../../../../powerpc64le-linux-gnu/lib/../lib -L/lib/powerpc64le-linux-gnu -L/lib/../lib -L/usr/lib/powerpc64le-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc-cross/powerpc64le-linux-gnu/16/../../../../powerpc64le-linux-gnu/lib -L/usr/lib -lstdc++ -lm -lgcc_s -latomic_asneeded -lc -lgcc_s /usr/lib/gcc-cross/powerpc64le-linux-gnu/16/crtendS.o /usr/lib/gcc-cross/powerpc64le-linux-gnu/16/../../../../powerpc64le-linux-gnu/lib/../lib/crtn.o -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-z -Wl,relro -Wl,-z -Wl,now -pthread -fopenmp -Wl,-soname -Wl,libmaus2_parallel.so.2 -o .libs/libmaus2_parallel.so.2.0.813 libtool: link: (cd ".libs" && rm -f "libmaus2_parallel.so.2" && ln -s "libmaus2_parallel.so.2.0.813" "libmaus2_parallel.so.2") libtool: link: (cd ".libs" && rm -f "libmaus2_parallel.so" && ln -s "libmaus2_parallel.so.2.0.813" "libmaus2_parallel.so") libtool: link: powerpc64le-linux-gnu-ar cr .libs/libmaus2_parallel.a libmaus2/parallel/la-SimpleThreadWorkPackage.o libmaus2/parallel/la-StdSemaphore.o libmaus2/parallel/la-StdMutex.o libmaus2/parallel/la-StdSpinLock.o libmaus2/parallel/la-StaticInitialisation.o libtool: link: powerpc64le-linux-gnu-ranlib .libs/libmaus2_parallel.a libtool: link: ( cd ".libs" && rm -f "libmaus2_parallel.la" && ln -s "../libmaus2_parallel.la" "libmaus2_parallel.la" ) /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -version-info 2:813:0 -L/lib -Wl,-z,relro -Wl,-z,now -o libmaus2.la -rpath /usr/lib/powerpc64le-linux-gnu libmaus2/la-StaticInitialization.lo libmaus2/bitio/la-CompactArray.lo libmaus2/rank/la-RankTable.lo libmaus2/rank/la-log2table.lo libmaus2/fastx/la-isFastQ.lo libmaus2/wavelet/la-toWaveletTreeBits.lo libmaus2/suffixsort/la-divsufsort.lo libmaus2/digest/la-md5.lo libmaus2/math/la-primes16.lo libmaus2/util/la-OutputFileNameTools.lo libmaus2/select/la-ESelectBase.lo libmaus2/bambam/la-CigarStringParser.lo libmaus2/fastx/la-Phred.lo libmaus2/lz/la-SnappyCompress.lo libmaus2/bambam/la-ReadEndsContainer.lo libmaus2/bambam/la-ReadEnds.lo libmaus2/huffman/la-IndexLoaderBase.lo libmaus2/bambam/la-BamAlignmentDecoderBase.lo libmaus2/bambam/la-StrCmpNum.lo libmaus2/huffman/la-KvInitResult.lo libmaus2/fm/la-MausFmToBwaConversion.lo libmaus2/util/la-TempFileNameGenerator.lo libmaus2/util/la-TempFileNameGeneratorState.lo libmaus2/util/la-ArgInfo.lo libmaus2/util/la-BitList.lo libmaus2/util/la-VarBitList.lo libmaus2/util/la-Concat.lo libmaus2/util/la-ConcatRequest.lo libmaus2/util/la-ConsoleColor.lo libmaus2/util/la-DynamicLoading.lo libmaus2/util/la-GetFileSize.lo libmaus2/util/la-Histogram.lo libmaus2/util/la-HistogramSet.lo libmaus2/util/la-IncreasingList.lo libmaus2/util/la-IntervalTree.lo libmaus2/util/la-GenericIntervalTree.lo libmaus2/util/la-LookupIntervalTree.lo libmaus2/digest/la-md5_interface.lo libmaus2/util/la-MemUsage.lo libmaus2/util/la-nstat.lo libmaus2/util/la-SaturatingCounter.lo libmaus2/util/la-StringSerialisation.lo libmaus2/util/la-SuccinctBorderArray.lo libmaus2/util/la-Terminal.lo libmaus2/util/la-OctetString.lo libmaus2/util/la-Utf8String.lo libmaus2/util/la-Utf8BlockIndexDecoder.lo libmaus2/util/la-Utf8BlockIndex.lo libmaus2/util/la-Utf8DecoderBuffer.lo libmaus2/util/la-Utf8DecoderWrapper.lo libmaus2/suffixtree/la-CompressedSuffixTree.lo libmaus2/bambam/la-AlignmentValidity.lo libmaus2/bambam/la-BamFlagBase.lo libmaus2/bambam/la-ReadGroup.lo libmaus2/bambam/la-DuplicationMetrics.lo libmaus2/bambam/la-BamDefaultAdapters.lo libmaus2/bambam/la-BamRange.lo libmaus2/bambam/la-BamIndexBinChunk.lo libmaus2/bambam/la-BamIndexLinearChunk.lo libmaus2/huffman/la-HuffmanTree.lo libmaus2/bambam/la-BamAlignmentDecoderInfo.lo libmaus2/lz/la-Lz4Base.lo libmaus2/lz/la-Lz4Compress.lo libmaus2/lz/la-Lz4DecoderBuffer.lo libmaus2/lz/la-lz4.lo libmaus2/fm/la-BidirectionalIndexInterval.lo libmaus2/fm/la-BidirectionalIndexIntervalSymbol.lo libmaus2/gamma/la-SparseGammaGapFileIndexDecoderEntry.lo libmaus2/fastx/la-FastALineParserLineInfo.lo libmaus2/fastx/la-FastAMatchTable.lo libmaus2/lcs/la-EditDistanceResult.lo libmaus2/fastx/la-FastABgzfIndexEntry.lo libmaus2/fastx/la-FastABgzfIndex.lo libmaus2/fastx/la-FastAIndexEntry.lo libmaus2/fastx/la-FastAIndex.lo libmaus2/hashing/la-Crc32.lo libmaus2/hashing/la-MurmurHash3.lo libmaus2/lcs/la-LocalBaseConstants.lo libmaus2/lcs/la-LocalEditDistanceResult.lo libmaus2/bambam/la-BamHeaderParserStateBase.lo libmaus2/bambam/la-GeneFlatFile.lo libmaus2/bambam/la-GeneFlatFileEntry.lo libmaus2/trie/la-SimpleTrie.lo libmaus2/bambam/la-BamStreamingMarkDuplicatesSupport.lo libmaus2/alignment/la-FactorMatchInfo.lo libmaus2/alignment/la-KmerInfo.lo libmaus2/bambam/la-SamInfoBase.lo libmaus2/digest/la-SHA1.lo libmaus2/digest/la-SHA2_224.lo libmaus2/digest/la-SHA2_256.lo libmaus2/digest/la-SHA2_384.lo libmaus2/digest/la-SHA2_512.lo libmaus2/digest/la-CRC32.lo libmaus2/digest/la-CRC32C_Core.lo libmaus2/digest/la-CRC32C.lo libmaus2/digest/la-CRC32_Core.lo libmaus2/bambam/parallel/la-ValidationFragment.lo libmaus2/bambam/parallel/la-GenericInputControlStreamInfo.lo libmaus2/fastx/la-NameInfoBase.lo libmaus2/bambam/parallel/la-RefIdInterval.lo libmaus2/fastx/la-RefPathToken.lo libmaus2/fastx/la-RefPathTokenVector.lo libmaus2/dazzler/db/la-FastaInfo.lo libmaus2/dazzler/db/la-IndexBase.lo libmaus2/dazzler/db/la-DatabaseFile.lo libmaus2/dazzler/db/la-Read.lo libmaus2/dazzler/align/la-Path.lo libmaus2/dazzler/align/la-Overlap.lo libmaus2/lcs/la-AlignmentStatistics.lo libmaus2/fastx/la-SingleWordDNABitBuffer.lo libmaus2/util/la-LongestIncreasingSubsequenceExtendedResult.lo libmaus2/lcs/la-AlignerFactory.lo libmaus2/lcs/la-BandedAlignerFactory.lo libmaus2/aio/la-InputStreamInstance.lo libmaus2/aio/la-OutputStreamInstance.lo libmaus2/aio/la-OutputStreamFactoryContainer.lo libmaus2/dazzler/align/la-TraceBlock.lo libmaus2/dazzler/align/la-ApproximateRun.lo libmaus2/suffixsort/la-BwtMergeBlockSortRequest.lo libmaus2/dazzler/align/la-OverlapMeta.lo libmaus2/dazzler/align/la-Tandem.lo libmaus2/dazzler/align/la-TandemVector.lo libmaus2/math/la-GmpInteger.lo libmaus2/math/la-GmpFloat.lo libmaus2/dazzler/align/la-TracePoint.lo libmaus2/lz/la-XzDecoder.lo libmaus2/util/la-ArgParser.lo libmaus2/fastx/la-DNAIndexMetaDataSequence.lo libmaus2/fastx/la-DNAIndexMetaData.lo libmaus2/bambam/la-PileVectorElement.lo libmaus2/bambam/la-PileQualityVectorElement.lo libmaus2/digest/la-SHA3_256.lo libmaus2/fastx/la-DNAIndexMetaDataBigBand.lo libmaus2/fastx/la-DNAIndexMetaDataBigBandBiDir.lo libmaus2/rank/la-DNARankBiDirRange.lo libmaus2/lcs/la-NNPTraceElement.lo libmaus2/lcs/la-NNPTraceContainer.lo libmaus2/lcs/la-NNPAlignResult.lo libmaus2/suffixsort/bwtb3m/la-MergeStrategyMergeGapRequest.lo libmaus2/suffixsort/bwtb3m/la-BwtMergeSort.lo libmaus2/suffixsort/bwtb3m/la-BwtComputeSSA.lo libmaus2/fastx/la-FastAToCompact4BigBand.lo libmaus2/suffixsort/bwtb3m/la-BwtMergeSortResult.lo libmaus2/lz/la-ZlibInterface.lo libmaus2/suffixsort/bwtb3m/la-BwtSelectSSA.lo libmaus2/aio/la-FileRemoval.lo libmaus2/rank/la-DNARankMEM.lo libmaus2/lcs/la-ChainAddQueueElement.lo libmaus2/lcs/la-Chain.lo libmaus2/lcs/la-ChainNode.lo libmaus2/lcs/la-ChainNodeInfo.lo libmaus2/lcs/la-ChainRemoveQueueElement.lo libmaus2/lcs/la-ChainSplayTreeNode.lo libmaus2/timing/la-RealTimeClock.lo libmaus2/aio/la-PosixFdOutputStreamFactory.lo libmaus2/dazzler/align/la-OverlapHeader.lo libmaus2/bambam/la-BamAlignment.lo libmaus2/suffixsort/bwtb3m/la-MergeStrategyMergeInput.lo libmaus2/aio/la-InputOutputStreamInstance.lo libmaus2/dazzler/align/la-OverlapInfo.lo libmaus2/dazzler/align/la-OverlapDataInterface.lo libmaus2/util/la-PathTools.lo libmaus2/aio/la-OFStreamOutputStreamFactory.lo libmaus2/aio/la-PosixFdInput.lo libmaus2/lz/la-BgzfDeflateHeaderFunctions.lo libmaus2/lz/la-BgzfDeflateZStreamBase.lo libmaus2/gtf/la-CDS.lo libmaus2/gtf/la-Exon.lo libmaus2/gtf/la-ExonInfo.lo libmaus2/gtf/la-ExonInterval.lo libmaus2/gtf/la-ExonSubInfo.lo libmaus2/protein/la-Blosum62.lo libmaus2/protein/la-CodonMapper.lo libmaus2/bambam/la-ChecksumsFactory.lo libmaus2/vcf/la-VCFSortEntry.lo libmaus2/network/la-CurlInitObject.lo libmaus2/network/la-CurlOutputBlock.lo libmaus2/network/la-CurlResponseAcceptor.lo libmaus2/network/la-HttpCurlResponseAcceptor.lo libmaus2/network/la-FtpCurlResponseAcceptor.lo libmaus2/network/la-CurlObject.lo libmaus2/network/la-CurlObjectReader.lo libmaus2/network/la-CurlObjectThreadCallable.lo libmaus2/network/la-CurlInputStreamBuffer.lo libmaus2/network/la-CurlInputStream.lo libmaus2/network/la-GetHostName.lo libmaus2/aio/la-SecrecyInputStreamFactory.lo libmaus2/aio/la-SecrecyOutputStreamFactory.lo libmaus2/bambam/la-Scram.lo libmaus2/bambam/parallel/la-ScramCramEncoding.lo libmaus2/parallel/threadpool/bgzf/la-BgzfDecompressContext.lo libmaus2/parallel/threadpool/bgzf/la-BgzfCompressContext.lo libmaus2/suffixsort/bwtb3m/la-BwtMergeIsaBase.lo libmaus2/suffixsort/bwtb3m/la-BwtMergeIsaParallelBase.lo libmaus2/suffixsort/bwtb3m/la-BwtMergeParallelGapFragMerge.lo libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplateByte32.lo libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplateLz432.lo libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplatePacTerm32.lo libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplateCompact32.lo libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplatePac32.lo libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplateUtf832.lo libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplateByte64.lo libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplateLz464.lo libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplatePacTerm64.lo libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplateCompact64.lo libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplatePac64.lo libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplateUtf864.lo libmaus2/suffixsort/bwtb3m/la-BwtMergeComputeSampledSA.lo -lz -lgmp -lnettle -lgpgme libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la -lz libtool: link: powerpc64le-linux-gnu-g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc-cross/powerpc64le-linux-gnu/16/../../../../powerpc64le-linux-gnu/lib/../lib/crti.o /usr/lib/gcc-cross/powerpc64le-linux-gnu/16/crtbeginS.o libmaus2/.libs/la-StaticInitialization.o libmaus2/bitio/.libs/la-CompactArray.o libmaus2/rank/.libs/la-RankTable.o libmaus2/rank/.libs/la-log2table.o libmaus2/fastx/.libs/la-isFastQ.o libmaus2/wavelet/.libs/la-toWaveletTreeBits.o libmaus2/suffixsort/.libs/la-divsufsort.o libmaus2/digest/.libs/la-md5.o libmaus2/math/.libs/la-primes16.o libmaus2/util/.libs/la-OutputFileNameTools.o libmaus2/select/.libs/la-ESelectBase.o libmaus2/bambam/.libs/la-CigarStringParser.o libmaus2/fastx/.libs/la-Phred.o libmaus2/lz/.libs/la-SnappyCompress.o libmaus2/bambam/.libs/la-ReadEndsContainer.o libmaus2/bambam/.libs/la-ReadEnds.o libmaus2/huffman/.libs/la-IndexLoaderBase.o libmaus2/bambam/.libs/la-BamAlignmentDecoderBase.o libmaus2/bambam/.libs/la-StrCmpNum.o libmaus2/huffman/.libs/la-KvInitResult.o libmaus2/fm/.libs/la-MausFmToBwaConversion.o libmaus2/util/.libs/la-TempFileNameGenerator.o libmaus2/util/.libs/la-TempFileNameGeneratorState.o libmaus2/util/.libs/la-ArgInfo.o libmaus2/util/.libs/la-BitList.o libmaus2/util/.libs/la-VarBitList.o libmaus2/util/.libs/la-Concat.o libmaus2/util/.libs/la-ConcatRequest.o libmaus2/util/.libs/la-ConsoleColor.o libmaus2/util/.libs/la-DynamicLoading.o libmaus2/util/.libs/la-GetFileSize.o libmaus2/util/.libs/la-Histogram.o libmaus2/util/.libs/la-HistogramSet.o libmaus2/util/.libs/la-IncreasingList.o libmaus2/util/.libs/la-IntervalTree.o libmaus2/util/.libs/la-GenericIntervalTree.o libmaus2/util/.libs/la-LookupIntervalTree.o libmaus2/digest/.libs/la-md5_interface.o libmaus2/util/.libs/la-MemUsage.o libmaus2/util/.libs/la-nstat.o libmaus2/util/.libs/la-SaturatingCounter.o libmaus2/util/.libs/la-StringSerialisation.o libmaus2/util/.libs/la-SuccinctBorderArray.o libmaus2/util/.libs/la-Terminal.o libmaus2/util/.libs/la-OctetString.o libmaus2/util/.libs/la-Utf8String.o libmaus2/util/.libs/la-Utf8BlockIndexDecoder.o libmaus2/util/.libs/la-Utf8BlockIndex.o libmaus2/util/.libs/la-Utf8DecoderBuffer.o libmaus2/util/.libs/la-Utf8DecoderWrapper.o libmaus2/suffixtree/.libs/la-CompressedSuffixTree.o libmaus2/bambam/.libs/la-AlignmentValidity.o libmaus2/bambam/.libs/la-BamFlagBase.o libmaus2/bambam/.libs/la-ReadGroup.o libmaus2/bambam/.libs/la-DuplicationMetrics.o libmaus2/bambam/.libs/la-BamDefaultAdapters.o libmaus2/bambam/.libs/la-BamRange.o libmaus2/bambam/.libs/la-BamIndexBinChunk.o libmaus2/bambam/.libs/la-BamIndexLinearChunk.o libmaus2/huffman/.libs/la-HuffmanTree.o libmaus2/bambam/.libs/la-BamAlignmentDecoderInfo.o libmaus2/lz/.libs/la-Lz4Base.o libmaus2/lz/.libs/la-Lz4Compress.o libmaus2/lz/.libs/la-Lz4DecoderBuffer.o libmaus2/lz/.libs/la-lz4.o libmaus2/fm/.libs/la-BidirectionalIndexInterval.o libmaus2/fm/.libs/la-BidirectionalIndexIntervalSymbol.o libmaus2/gamma/.libs/la-SparseGammaGapFileIndexDecoderEntry.o libmaus2/fastx/.libs/la-FastALineParserLineInfo.o libmaus2/fastx/.libs/la-FastAMatchTable.o libmaus2/lcs/.libs/la-EditDistanceResult.o libmaus2/fastx/.libs/la-FastABgzfIndexEntry.o libmaus2/fastx/.libs/la-FastABgzfIndex.o libmaus2/fastx/.libs/la-FastAIndexEntry.o libmaus2/fastx/.libs/la-FastAIndex.o libmaus2/hashing/.libs/la-Crc32.o libmaus2/hashing/.libs/la-MurmurHash3.o libmaus2/lcs/.libs/la-LocalBaseConstants.o libmaus2/lcs/.libs/la-LocalEditDistanceResult.o libmaus2/bambam/.libs/la-BamHeaderParserStateBase.o libmaus2/bambam/.libs/la-GeneFlatFile.o libmaus2/bambam/.libs/la-GeneFlatFileEntry.o libmaus2/trie/.libs/la-SimpleTrie.o libmaus2/bambam/.libs/la-BamStreamingMarkDuplicatesSupport.o libmaus2/alignment/.libs/la-FactorMatchInfo.o libmaus2/alignment/.libs/la-KmerInfo.o libmaus2/bambam/.libs/la-SamInfoBase.o libmaus2/digest/.libs/la-SHA1.o libmaus2/digest/.libs/la-SHA2_224.o libmaus2/digest/.libs/la-SHA2_256.o libmaus2/digest/.libs/la-SHA2_384.o libmaus2/digest/.libs/la-SHA2_512.o libmaus2/digest/.libs/la-CRC32.o libmaus2/digest/.libs/la-CRC32C_Core.o libmaus2/digest/.libs/la-CRC32C.o libmaus2/digest/.libs/la-CRC32_Core.o libmaus2/bambam/parallel/.libs/la-ValidationFragment.o libmaus2/bambam/parallel/.libs/la-GenericInputControlStreamInfo.o libmaus2/fastx/.libs/la-NameInfoBase.o libmaus2/bambam/parallel/.libs/la-RefIdInterval.o libmaus2/fastx/.libs/la-RefPathToken.o libmaus2/fastx/.libs/la-RefPathTokenVector.o libmaus2/dazzler/db/.libs/la-FastaInfo.o libmaus2/dazzler/db/.libs/la-IndexBase.o libmaus2/dazzler/db/.libs/la-DatabaseFile.o libmaus2/dazzler/db/.libs/la-Read.o libmaus2/dazzler/align/.libs/la-Path.o libmaus2/dazzler/align/.libs/la-Overlap.o libmaus2/lcs/.libs/la-AlignmentStatistics.o libmaus2/fastx/.libs/la-SingleWordDNABitBuffer.o libmaus2/util/.libs/la-LongestIncreasingSubsequenceExtendedResult.o libmaus2/lcs/.libs/la-AlignerFactory.o libmaus2/lcs/.libs/la-BandedAlignerFactory.o libmaus2/aio/.libs/la-InputStreamInstance.o libmaus2/aio/.libs/la-OutputStreamInstance.o libmaus2/aio/.libs/la-OutputStreamFactoryContainer.o libmaus2/dazzler/align/.libs/la-TraceBlock.o libmaus2/dazzler/align/.libs/la-ApproximateRun.o libmaus2/suffixsort/.libs/la-BwtMergeBlockSortRequest.o libmaus2/dazzler/align/.libs/la-OverlapMeta.o libmaus2/dazzler/align/.libs/la-Tandem.o libmaus2/dazzler/align/.libs/la-TandemVector.o libmaus2/math/.libs/la-GmpInteger.o libmaus2/math/.libs/la-GmpFloat.o libmaus2/dazzler/align/.libs/la-TracePoint.o libmaus2/lz/.libs/la-XzDecoder.o libmaus2/util/.libs/la-ArgParser.o libmaus2/fastx/.libs/la-DNAIndexMetaDataSequence.o libmaus2/fastx/.libs/la-DNAIndexMetaData.o libmaus2/bambam/.libs/la-PileVectorElement.o libmaus2/bambam/.libs/la-PileQualityVectorElement.o libmaus2/digest/.libs/la-SHA3_256.o libmaus2/fastx/.libs/la-DNAIndexMetaDataBigBand.o libmaus2/fastx/.libs/la-DNAIndexMetaDataBigBandBiDir.o libmaus2/rank/.libs/la-DNARankBiDirRange.o libmaus2/lcs/.libs/la-NNPTraceElement.o libmaus2/lcs/.libs/la-NNPTraceContainer.o libmaus2/lcs/.libs/la-NNPAlignResult.o libmaus2/suffixsort/bwtb3m/.libs/la-MergeStrategyMergeGapRequest.o libmaus2/suffixsort/bwtb3m/.libs/la-BwtMergeSort.o libmaus2/suffixsort/bwtb3m/.libs/la-BwtComputeSSA.o libmaus2/fastx/.libs/la-FastAToCompact4BigBand.o libmaus2/suffixsort/bwtb3m/.libs/la-BwtMergeSortResult.o libmaus2/lz/.libs/la-ZlibInterface.o libmaus2/suffixsort/bwtb3m/.libs/la-BwtSelectSSA.o libmaus2/aio/.libs/la-FileRemoval.o libmaus2/rank/.libs/la-DNARankMEM.o libmaus2/lcs/.libs/la-ChainAddQueueElement.o libmaus2/lcs/.libs/la-Chain.o libmaus2/lcs/.libs/la-ChainNode.o libmaus2/lcs/.libs/la-ChainNodeInfo.o libmaus2/lcs/.libs/la-ChainRemoveQueueElement.o libmaus2/lcs/.libs/la-ChainSplayTreeNode.o libmaus2/timing/.libs/la-RealTimeClock.o libmaus2/aio/.libs/la-PosixFdOutputStreamFactory.o libmaus2/dazzler/align/.libs/la-OverlapHeader.o libmaus2/bambam/.libs/la-BamAlignment.o libmaus2/suffixsort/bwtb3m/.libs/la-MergeStrategyMergeInput.o libmaus2/aio/.libs/la-InputOutputStreamInstance.o libmaus2/dazzler/align/.libs/la-OverlapInfo.o libmaus2/dazzler/align/.libs/la-OverlapDataInterface.o libmaus2/util/.libs/la-PathTools.o libmaus2/aio/.libs/la-OFStreamOutputStreamFactory.o libmaus2/aio/.libs/la-PosixFdInput.o libmaus2/lz/.libs/la-BgzfDeflateHeaderFunctions.o libmaus2/lz/.libs/la-BgzfDeflateZStreamBase.o libmaus2/gtf/.libs/la-CDS.o libmaus2/gtf/.libs/la-Exon.o libmaus2/gtf/.libs/la-ExonInfo.o libmaus2/gtf/.libs/la-ExonInterval.o libmaus2/gtf/.libs/la-ExonSubInfo.o libmaus2/protein/.libs/la-Blosum62.o libmaus2/protein/.libs/la-CodonMapper.o libmaus2/bambam/.libs/la-ChecksumsFactory.o libmaus2/vcf/.libs/la-VCFSortEntry.o libmaus2/network/.libs/la-CurlInitObject.o libmaus2/network/.libs/la-CurlOutputBlock.o libmaus2/network/.libs/la-CurlResponseAcceptor.o libmaus2/network/.libs/la-HttpCurlResponseAcceptor.o libmaus2/network/.libs/la-FtpCurlResponseAcceptor.o libmaus2/network/.libs/la-CurlObject.o libmaus2/network/.libs/la-CurlObjectReader.o libmaus2/network/.libs/la-CurlObjectThreadCallable.o libmaus2/network/.libs/la-CurlInputStreamBuffer.o libmaus2/network/.libs/la-CurlInputStream.o libmaus2/network/.libs/la-GetHostName.o libmaus2/aio/.libs/la-SecrecyInputStreamFactory.o libmaus2/aio/.libs/la-SecrecyOutputStreamFactory.o libmaus2/bambam/.libs/la-Scram.o libmaus2/bambam/parallel/.libs/la-ScramCramEncoding.o libmaus2/parallel/threadpool/bgzf/.libs/la-BgzfDecompressContext.o libmaus2/parallel/threadpool/bgzf/.libs/la-BgzfCompressContext.o libmaus2/suffixsort/bwtb3m/.libs/la-BwtMergeIsaBase.o libmaus2/suffixsort/bwtb3m/.libs/la-BwtMergeIsaParallelBase.o libmaus2/suffixsort/bwtb3m/.libs/la-BwtMergeParallelGapFragMerge.o libmaus2/suffixsort/bwtb3m/.libs/la-BwtMergeSortTemplateByte32.o libmaus2/suffixsort/bwtb3m/.libs/la-BwtMergeSortTemplateLz432.o libmaus2/suffixsort/bwtb3m/.libs/la-BwtMergeSortTemplatePacTerm32.o libmaus2/suffixsort/bwtb3m/.libs/la-BwtMergeSortTemplateCompact32.o libmaus2/suffixsort/bwtb3m/.libs/la-BwtMergeSortTemplatePac32.o libmaus2/suffixsort/bwtb3m/.libs/la-BwtMergeSortTemplateUtf832.o libmaus2/suffixsort/bwtb3m/.libs/la-BwtMergeSortTemplateByte64.o libmaus2/suffixsort/bwtb3m/.libs/la-BwtMergeSortTemplateLz464.o libmaus2/suffixsort/bwtb3m/.libs/la-BwtMergeSortTemplatePacTerm64.o libmaus2/suffixsort/bwtb3m/.libs/la-BwtMergeSortTemplateCompact64.o libmaus2/suffixsort/bwtb3m/.libs/la-BwtMergeSortTemplatePac64.o libmaus2/suffixsort/bwtb3m/.libs/la-BwtMergeSortTemplateUtf864.o libmaus2/suffixsort/bwtb3m/.libs/la-BwtMergeComputeSampledSA.o -Wl,-rpath -Wl,/build/reproducible-path/libmaus2-2.0.813+ds/src/.libs -L/lib -lgmp -lnettle -lgpgme ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so -lz -L/usr/lib/gcc-cross/powerpc64le-linux-gnu/16 -L/usr/lib/gcc-cross/powerpc64le-linux-gnu/16/../../../../powerpc64le-linux-gnu/lib/../lib -L/lib/powerpc64le-linux-gnu -L/lib/../lib -L/usr/lib/powerpc64le-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc-cross/powerpc64le-linux-gnu/16/../../../../powerpc64le-linux-gnu/lib -L/usr/lib -lstdc++ -lm -lgcc_s -latomic_asneeded -lc -lgcc_s /usr/lib/gcc-cross/powerpc64le-linux-gnu/16/crtendS.o /usr/lib/gcc-cross/powerpc64le-linux-gnu/16/../../../../powerpc64le-linux-gnu/lib/../lib/crtn.o -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-z -Wl,relro -Wl,-z -Wl,now -pthread -fopenmp -Wl,-soname -Wl,libmaus2.so.2 -o .libs/libmaus2.so.2.0.813 libtool: link: (cd ".libs" && rm -f "libmaus2.so.2" && ln -s "libmaus2.so.2.0.813" "libmaus2.so.2") libtool: link: (cd ".libs" && rm -f "libmaus2.so" && ln -s "libmaus2.so.2.0.813" "libmaus2.so") libtool: link: powerpc64le-linux-gnu-ar cr .libs/libmaus2.a libmaus2/la-StaticInitialization.o libmaus2/bitio/la-CompactArray.o libmaus2/rank/la-RankTable.o libmaus2/rank/la-log2table.o libmaus2/fastx/la-isFastQ.o libmaus2/wavelet/la-toWaveletTreeBits.o libmaus2/suffixsort/la-divsufsort.o libmaus2/digest/la-md5.o libmaus2/math/la-primes16.o libmaus2/util/la-OutputFileNameTools.o libmaus2/select/la-ESelectBase.o libmaus2/bambam/la-CigarStringParser.o libmaus2/fastx/la-Phred.o libmaus2/lz/la-SnappyCompress.o libmaus2/bambam/la-ReadEndsContainer.o libmaus2/bambam/la-ReadEnds.o libmaus2/huffman/la-IndexLoaderBase.o libmaus2/bambam/la-BamAlignmentDecoderBase.o libmaus2/bambam/la-StrCmpNum.o libmaus2/huffman/la-KvInitResult.o libmaus2/fm/la-MausFmToBwaConversion.o libmaus2/util/la-TempFileNameGenerator.o libmaus2/util/la-TempFileNameGeneratorState.o libmaus2/util/la-ArgInfo.o libmaus2/util/la-BitList.o libmaus2/util/la-VarBitList.o libmaus2/util/la-Concat.o libmaus2/util/la-ConcatRequest.o libmaus2/util/la-ConsoleColor.o libmaus2/util/la-DynamicLoading.o libmaus2/util/la-GetFileSize.o libmaus2/util/la-Histogram.o libmaus2/util/la-HistogramSet.o libmaus2/util/la-IncreasingList.o libmaus2/util/la-IntervalTree.o libmaus2/util/la-GenericIntervalTree.o libmaus2/util/la-LookupIntervalTree.o libmaus2/digest/la-md5_interface.o libmaus2/util/la-MemUsage.o libmaus2/util/la-nstat.o libmaus2/util/la-SaturatingCounter.o libmaus2/util/la-StringSerialisation.o libmaus2/util/la-SuccinctBorderArray.o libmaus2/util/la-Terminal.o libmaus2/util/la-OctetString.o libmaus2/util/la-Utf8String.o libmaus2/util/la-Utf8BlockIndexDecoder.o libmaus2/util/la-Utf8BlockIndex.o libmaus2/util/la-Utf8DecoderBuffer.o libmaus2/util/la-Utf8DecoderWrapper.o libmaus2/suffixtree/la-CompressedSuffixTree.o libmaus2/bambam/la-AlignmentValidity.o libmaus2/bambam/la-BamFlagBase.o libmaus2/bambam/la-ReadGroup.o libmaus2/bambam/la-DuplicationMetrics.o libmaus2/bambam/la-BamDefaultAdapters.o libmaus2/bambam/la-BamRange.o libmaus2/bambam/la-BamIndexBinChunk.o libmaus2/bambam/la-BamIndexLinearChunk.o libmaus2/huffman/la-HuffmanTree.o libmaus2/bambam/la-BamAlignmentDecoderInfo.o libmaus2/lz/la-Lz4Base.o libmaus2/lz/la-Lz4Compress.o libmaus2/lz/la-Lz4DecoderBuffer.o libmaus2/lz/la-lz4.o libmaus2/fm/la-BidirectionalIndexInterval.o libmaus2/fm/la-BidirectionalIndexIntervalSymbol.o libmaus2/gamma/la-SparseGammaGapFileIndexDecoderEntry.o libmaus2/fastx/la-FastALineParserLineInfo.o libmaus2/fastx/la-FastAMatchTable.o libmaus2/lcs/la-EditDistanceResult.o libmaus2/fastx/la-FastABgzfIndexEntry.o libmaus2/fastx/la-FastABgzfIndex.o libmaus2/fastx/la-FastAIndexEntry.o libmaus2/fastx/la-FastAIndex.o libmaus2/hashing/la-Crc32.o libmaus2/hashing/la-MurmurHash3.o libmaus2/lcs/la-LocalBaseConstants.o libmaus2/lcs/la-LocalEditDistanceResult.o libmaus2/bambam/la-BamHeaderParserStateBase.o libmaus2/bambam/la-GeneFlatFile.o libmaus2/bambam/la-GeneFlatFileEntry.o libmaus2/trie/la-SimpleTrie.o libmaus2/bambam/la-BamStreamingMarkDuplicatesSupport.o libmaus2/alignment/la-FactorMatchInfo.o libmaus2/alignment/la-KmerInfo.o libmaus2/bambam/la-SamInfoBase.o libmaus2/digest/la-SHA1.o libmaus2/digest/la-SHA2_224.o libmaus2/digest/la-SHA2_256.o libmaus2/digest/la-SHA2_384.o libmaus2/digest/la-SHA2_512.o libmaus2/digest/la-CRC32.o libmaus2/digest/la-CRC32C_Core.o libmaus2/digest/la-CRC32C.o libmaus2/digest/la-CRC32_Core.o libmaus2/bambam/parallel/la-ValidationFragment.o libmaus2/bambam/parallel/la-GenericInputControlStreamInfo.o libmaus2/fastx/la-NameInfoBase.o libmaus2/bambam/parallel/la-RefIdInterval.o libmaus2/fastx/la-RefPathToken.o libmaus2/fastx/la-RefPathTokenVector.o libmaus2/dazzler/db/la-FastaInfo.o libmaus2/dazzler/db/la-IndexBase.o libmaus2/dazzler/db/la-DatabaseFile.o libmaus2/dazzler/db/la-Read.o libmaus2/dazzler/align/la-Path.o libmaus2/dazzler/align/la-Overlap.o libmaus2/lcs/la-AlignmentStatistics.o libmaus2/fastx/la-SingleWordDNABitBuffer.o libmaus2/util/la-LongestIncreasingSubsequenceExtendedResult.o libmaus2/lcs/la-AlignerFactory.o libmaus2/lcs/la-BandedAlignerFactory.o libmaus2/aio/la-InputStreamInstance.o libmaus2/aio/la-OutputStreamInstance.o libmaus2/aio/la-OutputStreamFactoryContainer.o libmaus2/dazzler/align/la-TraceBlock.o libmaus2/dazzler/align/la-ApproximateRun.o libmaus2/suffixsort/la-BwtMergeBlockSortRequest.o libmaus2/dazzler/align/la-OverlapMeta.o libmaus2/dazzler/align/la-Tandem.o libmaus2/dazzler/align/la-TandemVector.o libmaus2/math/la-GmpInteger.o libmaus2/math/la-GmpFloat.o libmaus2/dazzler/align/la-TracePoint.o libmaus2/lz/la-XzDecoder.o libmaus2/util/la-ArgParser.o libmaus2/fastx/la-DNAIndexMetaDataSequence.o libmaus2/fastx/la-DNAIndexMetaData.o libmaus2/bambam/la-PileVectorElement.o libmaus2/bambam/la-PileQualityVectorElement.o libmaus2/digest/la-SHA3_256.o libmaus2/fastx/la-DNAIndexMetaDataBigBand.o libmaus2/fastx/la-DNAIndexMetaDataBigBandBiDir.o libmaus2/rank/la-DNARankBiDirRange.o libmaus2/lcs/la-NNPTraceElement.o libmaus2/lcs/la-NNPTraceContainer.o libmaus2/lcs/la-NNPAlignResult.o libmaus2/suffixsort/bwtb3m/la-MergeStrategyMergeGapRequest.o libmaus2/suffixsort/bwtb3m/la-BwtMergeSort.o libmaus2/suffixsort/bwtb3m/la-BwtComputeSSA.o libmaus2/fastx/la-FastAToCompact4BigBand.o libmaus2/suffixsort/bwtb3m/la-BwtMergeSortResult.o libmaus2/lz/la-ZlibInterface.o libmaus2/suffixsort/bwtb3m/la-BwtSelectSSA.o libmaus2/aio/la-FileRemoval.o libmaus2/rank/la-DNARankMEM.o libmaus2/lcs/la-ChainAddQueueElement.o libmaus2/lcs/la-Chain.o libmaus2/lcs/la-ChainNode.o libmaus2/lcs/la-ChainNodeInfo.o libmaus2/lcs/la-ChainRemoveQueueElement.o libmaus2/lcs/la-ChainSplayTreeNode.o libmaus2/timing/la-RealTimeClock.o libmaus2/aio/la-PosixFdOutputStreamFactory.o libmaus2/dazzler/align/la-OverlapHeader.o libmaus2/bambam/la-BamAlignment.o libmaus2/suffixsort/bwtb3m/la-MergeStrategyMergeInput.o libmaus2/aio/la-InputOutputStreamInstance.o libmaus2/dazzler/align/la-OverlapInfo.o libmaus2/dazzler/align/la-OverlapDataInterface.o libmaus2/util/la-PathTools.o libmaus2/aio/la-OFStreamOutputStreamFactory.o libmaus2/aio/la-PosixFdInput.o libmaus2/lz/la-BgzfDeflateHeaderFunctions.o libmaus2/lz/la-BgzfDeflateZStreamBase.o libmaus2/gtf/la-CDS.o libmaus2/gtf/la-Exon.o libmaus2/gtf/la-ExonInfo.o libmaus2/gtf/la-ExonInterval.o libmaus2/gtf/la-ExonSubInfo.o libmaus2/protein/la-Blosum62.o libmaus2/protein/la-CodonMapper.o libmaus2/bambam/la-ChecksumsFactory.o libmaus2/vcf/la-VCFSortEntry.o libmaus2/network/la-CurlInitObject.o libmaus2/network/la-CurlOutputBlock.o libmaus2/network/la-CurlResponseAcceptor.o libmaus2/network/la-HttpCurlResponseAcceptor.o libmaus2/network/la-FtpCurlResponseAcceptor.o libmaus2/network/la-CurlObject.o libmaus2/network/la-CurlObjectReader.o libmaus2/network/la-CurlObjectThreadCallable.o libmaus2/network/la-CurlInputStreamBuffer.o libmaus2/network/la-CurlInputStream.o libmaus2/network/la-GetHostName.o libmaus2/aio/la-SecrecyInputStreamFactory.o libmaus2/aio/la-SecrecyOutputStreamFactory.o libmaus2/bambam/la-Scram.o libmaus2/bambam/parallel/la-ScramCramEncoding.o libmaus2/parallel/threadpool/bgzf/la-BgzfDecompressContext.o libmaus2/parallel/threadpool/bgzf/la-BgzfCompressContext.o libmaus2/suffixsort/bwtb3m/la-BwtMergeIsaBase.o libmaus2/suffixsort/bwtb3m/la-BwtMergeIsaParallelBase.o libmaus2/suffixsort/bwtb3m/la-BwtMergeParallelGapFragMerge.o libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplateByte32.o libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplateLz432.o libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplatePacTerm32.o libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplateCompact32.o libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplatePac32.o libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplateUtf832.o libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplateByte64.o libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplateLz464.o libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplatePacTerm64.o libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplateCompact64.o libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplatePac64.o libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplateUtf864.o libmaus2/suffixsort/bwtb3m/la-BwtMergeComputeSampledSA.o libtool: link: powerpc64le-linux-gnu-ranlib .libs/libmaus2.a libtool: link: ( cd ".libs" && rm -f "libmaus2.la" && ln -s "../libmaus2.la" "libmaus2.la" ) /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/lcs/simd_align_128_la-SimdX86GlobalAlignmentConstants128.lo `test -f 'libmaus2/lcs/SimdX86GlobalAlignmentConstants128.cpp' || echo './'`libmaus2/lcs/SimdX86GlobalAlignmentConstants128.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lcs/SimdX86GlobalAlignmentConstants128.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/simd_align_128_la-SimdX86GlobalAlignmentConstants128.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lcs/SimdX86GlobalAlignmentConstants128.cpp -o libmaus2/lcs/simd_align_128_la-SimdX86GlobalAlignmentConstants128.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/lcs/simd_align_128_la-SimdX86BandedGlobalAlignmentX128_8.lo `test -f 'libmaus2/lcs/SimdX86BandedGlobalAlignmentX128_8.cpp' || echo './'`libmaus2/lcs/SimdX86BandedGlobalAlignmentX128_8.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lcs/SimdX86BandedGlobalAlignmentX128_8.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/simd_align_128_la-SimdX86BandedGlobalAlignmentX128_8.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lcs/SimdX86BandedGlobalAlignmentX128_8.cpp -o libmaus2/lcs/simd_align_128_la-SimdX86BandedGlobalAlignmentX128_8.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/lcs/simd_align_128_la-SimdX86BandedGlobalAlignmentX128_16.lo `test -f 'libmaus2/lcs/SimdX86BandedGlobalAlignmentX128_16.cpp' || echo './'`libmaus2/lcs/SimdX86BandedGlobalAlignmentX128_16.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lcs/SimdX86BandedGlobalAlignmentX128_16.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/simd_align_128_la-SimdX86BandedGlobalAlignmentX128_16.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lcs/SimdX86BandedGlobalAlignmentX128_16.cpp -o libmaus2/lcs/simd_align_128_la-SimdX86BandedGlobalAlignmentX128_16.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/lcs/simd_align_128_la-SimdX86GlobalAlignmentX128_8.lo `test -f 'libmaus2/lcs/SimdX86GlobalAlignmentX128_8.cpp' || echo './'`libmaus2/lcs/SimdX86GlobalAlignmentX128_8.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lcs/SimdX86GlobalAlignmentX128_8.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/simd_align_128_la-SimdX86GlobalAlignmentX128_8.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lcs/SimdX86GlobalAlignmentX128_8.cpp -o libmaus2/lcs/simd_align_128_la-SimdX86GlobalAlignmentX128_8.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/lcs/simd_align_128_la-SimdX86GlobalAlignmentX128_16.lo `test -f 'libmaus2/lcs/SimdX86GlobalAlignmentX128_16.cpp' || echo './'`libmaus2/lcs/SimdX86GlobalAlignmentX128_16.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lcs/SimdX86GlobalAlignmentX128_16.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/simd_align_128_la-SimdX86GlobalAlignmentX128_16.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lcs/SimdX86GlobalAlignmentX128_16.cpp -o libmaus2/lcs/simd_align_128_la-SimdX86GlobalAlignmentX128_16.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -version-info 2:813:0 -Wl,-z,relro -Wl,-z,now -o libmaus2_simd_align_128.la -rpath /usr/lib/powerpc64le-linux-gnu libmaus2/lcs/simd_align_128_la-SimdX86GlobalAlignmentConstants128.lo libmaus2/lcs/simd_align_128_la-SimdX86BandedGlobalAlignmentX128_8.lo libmaus2/lcs/simd_align_128_la-SimdX86BandedGlobalAlignmentX128_16.lo libmaus2/lcs/simd_align_128_la-SimdX86GlobalAlignmentX128_8.lo libmaus2/lcs/simd_align_128_la-SimdX86GlobalAlignmentX128_16.lo libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la -lz libtool: link: powerpc64le-linux-gnu-g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc-cross/powerpc64le-linux-gnu/16/../../../../powerpc64le-linux-gnu/lib/../lib/crti.o /usr/lib/gcc-cross/powerpc64le-linux-gnu/16/crtbeginS.o libmaus2/lcs/.libs/simd_align_128_la-SimdX86GlobalAlignmentConstants128.o libmaus2/lcs/.libs/simd_align_128_la-SimdX86BandedGlobalAlignmentX128_8.o libmaus2/lcs/.libs/simd_align_128_la-SimdX86BandedGlobalAlignmentX128_16.o libmaus2/lcs/.libs/simd_align_128_la-SimdX86GlobalAlignmentX128_8.o libmaus2/lcs/.libs/simd_align_128_la-SimdX86GlobalAlignmentX128_16.o -Wl,-rpath -Wl,/build/reproducible-path/libmaus2-2.0.813+ds/src/.libs ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so -lz -L/usr/lib/gcc-cross/powerpc64le-linux-gnu/16 -L/usr/lib/gcc-cross/powerpc64le-linux-gnu/16/../../../../powerpc64le-linux-gnu/lib/../lib -L/lib/powerpc64le-linux-gnu -L/lib/../lib -L/usr/lib/powerpc64le-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc-cross/powerpc64le-linux-gnu/16/../../../../powerpc64le-linux-gnu/lib -L/lib -L/usr/lib -lstdc++ -lm -lgcc_s -latomic_asneeded -lc -lgcc_s /usr/lib/gcc-cross/powerpc64le-linux-gnu/16/crtendS.o /usr/lib/gcc-cross/powerpc64le-linux-gnu/16/../../../../powerpc64le-linux-gnu/lib/../lib/crtn.o -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-z -Wl,relro -Wl,-z -Wl,now -pthread -fopenmp -Wl,-soname -Wl,libmaus2_simd_align_128.so.2 -o .libs/libmaus2_simd_align_128.so.2.0.813 libtool: link: (cd ".libs" && rm -f "libmaus2_simd_align_128.so.2" && ln -s "libmaus2_simd_align_128.so.2.0.813" "libmaus2_simd_align_128.so.2") libtool: link: (cd ".libs" && rm -f "libmaus2_simd_align_128.so" && ln -s "libmaus2_simd_align_128.so.2.0.813" "libmaus2_simd_align_128.so") libtool: link: powerpc64le-linux-gnu-ar cr .libs/libmaus2_simd_align_128.a libmaus2/lcs/simd_align_128_la-SimdX86GlobalAlignmentConstants128.o libmaus2/lcs/simd_align_128_la-SimdX86BandedGlobalAlignmentX128_8.o libmaus2/lcs/simd_align_128_la-SimdX86BandedGlobalAlignmentX128_16.o libmaus2/lcs/simd_align_128_la-SimdX86GlobalAlignmentX128_8.o libmaus2/lcs/simd_align_128_la-SimdX86GlobalAlignmentX128_16.o libtool: link: powerpc64le-linux-gnu-ranlib .libs/libmaus2_simd_align_128.a libtool: link: ( cd ".libs" && rm -f "libmaus2_simd_align_128.la" && ln -s "../libmaus2_simd_align_128.la" "libmaus2_simd_align_128.la" ) /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/lcs/simd_align_256_la-SimdX86GlobalAlignmentConstants256.lo `test -f 'libmaus2/lcs/SimdX86GlobalAlignmentConstants256.cpp' || echo './'`libmaus2/lcs/SimdX86GlobalAlignmentConstants256.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lcs/SimdX86GlobalAlignmentConstants256.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/simd_align_256_la-SimdX86GlobalAlignmentConstants256.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lcs/SimdX86GlobalAlignmentConstants256.cpp -o libmaus2/lcs/simd_align_256_la-SimdX86GlobalAlignmentConstants256.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/lcs/simd_align_256_la-SimdX86BandedGlobalAlignmentY256_8.lo `test -f 'libmaus2/lcs/SimdX86BandedGlobalAlignmentY256_8.cpp' || echo './'`libmaus2/lcs/SimdX86BandedGlobalAlignmentY256_8.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lcs/SimdX86BandedGlobalAlignmentY256_8.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/simd_align_256_la-SimdX86BandedGlobalAlignmentY256_8.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lcs/SimdX86BandedGlobalAlignmentY256_8.cpp -o libmaus2/lcs/simd_align_256_la-SimdX86BandedGlobalAlignmentY256_8.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/lcs/simd_align_256_la-SimdX86BandedGlobalAlignmentY256_16.lo `test -f 'libmaus2/lcs/SimdX86BandedGlobalAlignmentY256_16.cpp' || echo './'`libmaus2/lcs/SimdX86BandedGlobalAlignmentY256_16.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lcs/SimdX86BandedGlobalAlignmentY256_16.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/simd_align_256_la-SimdX86BandedGlobalAlignmentY256_16.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lcs/SimdX86BandedGlobalAlignmentY256_16.cpp -o libmaus2/lcs/simd_align_256_la-SimdX86BandedGlobalAlignmentY256_16.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/lcs/simd_align_256_la-SimdX86BandedGlobalAlignmentScoreY256_16.lo `test -f 'libmaus2/lcs/SimdX86BandedGlobalAlignmentScoreY256_16.cpp' || echo './'`libmaus2/lcs/SimdX86BandedGlobalAlignmentScoreY256_16.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lcs/SimdX86BandedGlobalAlignmentScoreY256_16.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/simd_align_256_la-SimdX86BandedGlobalAlignmentScoreY256_16.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lcs/SimdX86BandedGlobalAlignmentScoreY256_16.cpp -o libmaus2/lcs/simd_align_256_la-SimdX86BandedGlobalAlignmentScoreY256_16.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/lcs/simd_align_256_la-SimdX86GlobalAlignmentY256_8.lo `test -f 'libmaus2/lcs/SimdX86GlobalAlignmentY256_8.cpp' || echo './'`libmaus2/lcs/SimdX86GlobalAlignmentY256_8.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lcs/SimdX86GlobalAlignmentY256_8.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/simd_align_256_la-SimdX86GlobalAlignmentY256_8.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lcs/SimdX86GlobalAlignmentY256_8.cpp -o libmaus2/lcs/simd_align_256_la-SimdX86GlobalAlignmentY256_8.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/lcs/simd_align_256_la-SimdX86GlobalAlignmentY256_16.lo `test -f 'libmaus2/lcs/SimdX86GlobalAlignmentY256_16.cpp' || echo './'`libmaus2/lcs/SimdX86GlobalAlignmentY256_16.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lcs/SimdX86GlobalAlignmentY256_16.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/simd_align_256_la-SimdX86GlobalAlignmentY256_16.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lcs/SimdX86GlobalAlignmentY256_16.cpp -o libmaus2/lcs/simd_align_256_la-SimdX86GlobalAlignmentY256_16.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/lcs/simd_align_256_la-AlignmentOneAgainstManyAVX2.lo `test -f 'libmaus2/lcs/AlignmentOneAgainstManyAVX2.cpp' || echo './'`libmaus2/lcs/AlignmentOneAgainstManyAVX2.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lcs/AlignmentOneAgainstManyAVX2.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/simd_align_256_la-AlignmentOneAgainstManyAVX2.o In file included from ./libmaus2/lcs/Aligner.hpp:21, from ./libmaus2/lcs/NP.hpp:21, from ./libmaus2/lcs/AlignmentOneAgainstManyAVX2.hpp:23, from libmaus2/lcs/AlignmentOneAgainstManyAVX2.cpp:19: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lcs/AlignmentOneAgainstManyAVX2.cpp -o libmaus2/lcs/simd_align_256_la-AlignmentOneAgainstManyAVX2.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -version-info 2:813:0 -Wl,-z,relro -Wl,-z,now -o libmaus2_simd_align_256.la -rpath /usr/lib/powerpc64le-linux-gnu libmaus2/lcs/simd_align_256_la-SimdX86GlobalAlignmentConstants256.lo libmaus2/lcs/simd_align_256_la-SimdX86BandedGlobalAlignmentY256_8.lo libmaus2/lcs/simd_align_256_la-SimdX86BandedGlobalAlignmentY256_16.lo libmaus2/lcs/simd_align_256_la-SimdX86BandedGlobalAlignmentScoreY256_16.lo libmaus2/lcs/simd_align_256_la-SimdX86GlobalAlignmentY256_8.lo libmaus2/lcs/simd_align_256_la-SimdX86GlobalAlignmentY256_16.lo libmaus2/lcs/simd_align_256_la-AlignmentOneAgainstManyAVX2.lo libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la -lz libtool: link: powerpc64le-linux-gnu-g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc-cross/powerpc64le-linux-gnu/16/../../../../powerpc64le-linux-gnu/lib/../lib/crti.o /usr/lib/gcc-cross/powerpc64le-linux-gnu/16/crtbeginS.o libmaus2/lcs/.libs/simd_align_256_la-SimdX86GlobalAlignmentConstants256.o libmaus2/lcs/.libs/simd_align_256_la-SimdX86BandedGlobalAlignmentY256_8.o libmaus2/lcs/.libs/simd_align_256_la-SimdX86BandedGlobalAlignmentY256_16.o libmaus2/lcs/.libs/simd_align_256_la-SimdX86BandedGlobalAlignmentScoreY256_16.o libmaus2/lcs/.libs/simd_align_256_la-SimdX86GlobalAlignmentY256_8.o libmaus2/lcs/.libs/simd_align_256_la-SimdX86GlobalAlignmentY256_16.o libmaus2/lcs/.libs/simd_align_256_la-AlignmentOneAgainstManyAVX2.o -Wl,-rpath -Wl,/build/reproducible-path/libmaus2-2.0.813+ds/src/.libs ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so -lz -L/usr/lib/gcc-cross/powerpc64le-linux-gnu/16 -L/usr/lib/gcc-cross/powerpc64le-linux-gnu/16/../../../../powerpc64le-linux-gnu/lib/../lib -L/lib/powerpc64le-linux-gnu -L/lib/../lib -L/usr/lib/powerpc64le-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc-cross/powerpc64le-linux-gnu/16/../../../../powerpc64le-linux-gnu/lib -L/lib -L/usr/lib -lstdc++ -lm -lgcc_s -latomic_asneeded -lc -lgcc_s /usr/lib/gcc-cross/powerpc64le-linux-gnu/16/crtendS.o /usr/lib/gcc-cross/powerpc64le-linux-gnu/16/../../../../powerpc64le-linux-gnu/lib/../lib/crtn.o -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-z -Wl,relro -Wl,-z -Wl,now -pthread -fopenmp -Wl,-soname -Wl,libmaus2_simd_align_256.so.2 -o .libs/libmaus2_simd_align_256.so.2.0.813 libtool: link: (cd ".libs" && rm -f "libmaus2_simd_align_256.so.2" && ln -s "libmaus2_simd_align_256.so.2.0.813" "libmaus2_simd_align_256.so.2") libtool: link: (cd ".libs" && rm -f "libmaus2_simd_align_256.so" && ln -s "libmaus2_simd_align_256.so.2.0.813" "libmaus2_simd_align_256.so") libtool: link: powerpc64le-linux-gnu-ar cr .libs/libmaus2_simd_align_256.a libmaus2/lcs/simd_align_256_la-SimdX86GlobalAlignmentConstants256.o libmaus2/lcs/simd_align_256_la-SimdX86BandedGlobalAlignmentY256_8.o libmaus2/lcs/simd_align_256_la-SimdX86BandedGlobalAlignmentY256_16.o libmaus2/lcs/simd_align_256_la-SimdX86BandedGlobalAlignmentScoreY256_16.o libmaus2/lcs/simd_align_256_la-SimdX86GlobalAlignmentY256_8.o libmaus2/lcs/simd_align_256_la-SimdX86GlobalAlignmentY256_16.o libmaus2/lcs/simd_align_256_la-AlignmentOneAgainstManyAVX2.o libtool: link: powerpc64le-linux-gnu-ranlib .libs/libmaus2_simd_align_256.a libtool: link: ( cd ".libs" && rm -f "libmaus2_simd_align_256.la" && ln -s "../libmaus2_simd_align_256.la" "libmaus2_simd_align_256.la" ) /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testThreadPool test/testThreadPool-testThreadPool.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testThreadPool test/testThreadPool-testThreadPool.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testThreadPoolRead-testThreadPoolRead.o `test -f 'test/testThreadPoolRead.cpp' || echo './'`test/testThreadPoolRead.cpp /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testThreadPoolRead test/testThreadPoolRead-testThreadPoolRead.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testThreadPoolRead test/testThreadPoolRead-testThreadPoolRead.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testThreadPoolBgzfRead-testThreadPoolBgzfRead.o `test -f 'test/testThreadPoolBgzfRead.cpp' || echo './'`test/testThreadPoolBgzfRead.cpp /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testThreadPoolBgzfRead test/testThreadPoolBgzfRead-testThreadPoolBgzfRead.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testThreadPoolBgzfRead test/testThreadPoolBgzfRead-testThreadPoolBgzfRead.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testThreadPoolBgzfDecompress-testThreadPoolBgzfDecompress.o `test -f 'test/testThreadPoolBgzfDecompress.cpp' || echo './'`test/testThreadPoolBgzfDecompress.cpp /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testThreadPoolBgzfDecompress test/testThreadPoolBgzfDecompress-testThreadPoolBgzfDecompress.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testThreadPoolBgzfDecompress test/testThreadPoolBgzfDecompress-testThreadPoolBgzfDecompress.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testThreadPoolBamParse-testThreadPoolBamParse.o `test -f 'test/testThreadPoolBamParse.cpp' || echo './'`test/testThreadPoolBamParse.cpp /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testThreadPoolBamParse test/testThreadPoolBamParse-testThreadPoolBamParse.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testThreadPoolBamParse test/testThreadPoolBamParse-testThreadPoolBamParse.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testThreadPoolBamAccumulate-testThreadPoolBamAccumulate.o `test -f 'test/testThreadPoolBamAccumulate.cpp' || echo './'`test/testThreadPoolBamAccumulate.cpp In file included from ./libmaus2/parallel/threadpool/bam/ThreadPoolBamParseAccumulateHandler.hpp:22, from test/testThreadPoolBamAccumulate.cpp:18: ./libmaus2/util/AtomicArray.hpp:45:43: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 45 | AtomicArray(AtomicArray const & O) = delete; | ^~~~~~~~~~~~~~~~~ ./libmaus2/util/AtomicArray.hpp:45:43: note: remove the ‘< >’ In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/bambam/BamAuxFilterVector.hpp:22, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:27, from ./libmaus2/parallel/threadpool/bam/ThreadPoolBamParseAccumulateHandler.hpp:23: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/bambam/CigarStringParser.hpp:25, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/parallel/threadpool/bam/ThreadPoolBamParseAccumulateHandler.hpp: In member function ‘virtual void libmaus2::parallel::threadpool::bam::ThreadPoolBamParseAccumulateHandler::sortFinished(libmaus2::util::shared_ptr, libmaus2::util::shared_ptr)’: ./libmaus2/parallel/threadpool/bam/ThreadPoolBamParseAccumulateHandler.hpp:1331:99: warning: unused variable ‘final’ [-Wunused-variable] 1331 | libmaus2::util::AtomicArray const & final = ptr->getFinal(); | ^~~~~ /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testThreadPoolBamAccumulate test/testThreadPoolBamAccumulate-testThreadPoolBamAccumulate.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testThreadPoolBamAccumulate test/testThreadPoolBamAccumulate-testThreadPoolBamAccumulate.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testThreadPoolCramEncode-testThreadPoolCramEncode.o `test -f 'test/testThreadPoolCramEncode.cpp' || echo './'`test/testThreadPoolCramEncode.cpp In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/util/IntervalTree.hpp:25, from ./libmaus2/fastx/FastInterval.hpp:25, from ./libmaus2/fastx/FastAReader.hpp:31, from test/testThreadPoolCramEncode.cpp:25: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testThreadPoolCramEncode test/testThreadPoolCramEncode-testThreadPoolCramEncode.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testThreadPoolCramEncode test/testThreadPoolCramEncode-testThreadPoolCramEncode.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testAIO-testAIO.o `test -f 'test/testAIO.cpp' || echo './'`test/testAIO.cpp /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testAIO test/testAIO-testAIO.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testAIO test/testAIO-testAIO.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testbitbtree-testbitbtree.o `test -f 'test/testbitbtree.cpp' || echo './'`test/testbitbtree.cpp In file included from test/testbitbtree.cpp:20: ./libmaus2/bitbtree/bitbtree.hpp: In member function ‘libmaus2::bitbtree::BitBTree::InsertInfo libmaus2::bitbtree::BitBTree::insertBit(uint64_t, uint64_t, bool, uint64_t) [with unsigned int k = 1; unsigned int w = 1]’: ./libmaus2/bitbtree/bitbtree.hpp:1485:123: warning: array subscript 2 is above array bounds of ‘libmaus2::bitbtree::BitBTreeInnerNode::data_type [2]’ {aka ‘libmaus2::bitbtree::BitBTreeInnerNodeData [2]’} [-Warray-bounds=] 1485 | uint64_t const right_ptr = innernode->data[right_index].ptr; | ~~~~~~~~~~~~~~~^ ./libmaus2/bitbtree/bitbtree.hpp:77:35: note: while referencing ‘libmaus2::bitbtree::BitBTreeInnerNode::data’ 77 | data_type data[2*k]; | ^~~~ ./libmaus2/bitbtree/bitbtree.hpp:1491:123: warning: array subscript 2 is above array bounds of ‘libmaus2::bitbtree::BitBTreeInnerNode::data_type [2]’ {aka ‘libmaus2::bitbtree::BitBTreeInnerNodeData [2]’} [-Warray-bounds=] 1491 | uint64_t const right_cnt = innernode->data[right_index].cnt; | ~~~~~~~~~~~~~~~^ ./libmaus2/bitbtree/bitbtree.hpp:77:35: note: while referencing ‘libmaus2::bitbtree::BitBTreeInnerNode::data’ 77 | data_type data[2*k]; | ^~~~ ./libmaus2/bitbtree/bitbtree.hpp:1550:112: warning: array subscript 2 is above array bounds of ‘libmaus2::bitbtree::BitBTreeInnerNode::data_type [2]’ {aka ‘libmaus2::bitbtree::BitBTreeInnerNodeData [2]’} [-Warray-bounds=] 1550 | innernode->data[right_index].cnt = new_right_cnt; | ~~~~~~~~~~~~~~~^ ./libmaus2/bitbtree/bitbtree.hpp:77:35: note: while referencing ‘libmaus2::bitbtree::BitBTreeInnerNode::data’ 77 | data_type data[2*k]; | ^~~~ ./libmaus2/bitbtree/bitbtree.hpp:1551:112: warning: array subscript 2 is above array bounds of ‘libmaus2::bitbtree::BitBTreeInnerNode::data_type [2]’ {aka ‘libmaus2::bitbtree::BitBTreeInnerNodeData [2]’} [-Warray-bounds=] 1551 | innernode->data[right_index].bcnt = right_leaf->data.rank1(new_right_cnt-1); | ~~~~~~~~~~~~~~~^ ./libmaus2/bitbtree/bitbtree.hpp:77:35: note: while referencing ‘libmaus2::bitbtree::BitBTreeInnerNode::data’ 77 | data_type data[2*k]; | ^~~~ /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testbitbtree test/testbitbtree-testbitbtree.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testbitbtree test/testbitbtree-testbitbtree.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testBitIO-testBitIO.o `test -f 'test/testBitIO.cpp' || echo './'`test/testBitIO.cpp In file included from ./libmaus2/bitio/BitVector.hpp:29, from test/testBitIO.cpp:30: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from test/testBitIO.cpp:27: In member function ‘void libmaus2::bitio::CompactOffsetOneArray::putBits(uint64_t, uint64_t)’, inlined from ‘void libmaus2::bitio::CompactOffsetOneArray::set(uint64_t, uint64_t)’ at ./libmaus2/bitio/CompactOffsetOneArray.hpp:59:46, inlined from ‘int main()’ at test/testBitIO.cpp:722:8: ./libmaus2/bitio/CompactOffsetOneArray.hpp:369:50: warning: array subscript 1 is outside array bounds of ‘uint64_t [1]’ {aka ‘long unsigned int [1]’} [-Warray-bounds=] 369 | uint64_t t = *DD; | ^ test/testBitIO.cpp: In function ‘int main()’: test/testBitIO.cpp:719:26: note: at offset 8 into object ‘v’ of size 8 719 | uint64_t v = -1; | ^ In member function ‘void libmaus2::bitio::CompactOffsetOneArray::putBits(uint64_t, uint64_t)’, inlined from ‘void libmaus2::bitio::CompactOffsetOneArray::set(uint64_t, uint64_t)’ at ./libmaus2/bitio/CompactOffsetOneArray.hpp:59:46, inlined from ‘int main()’ at test/testBitIO.cpp:722:8: ./libmaus2/bitio/CompactOffsetOneArray.hpp:372:45: warning: array subscript 1 is outside array bounds of ‘uint64_t [1]’ {aka ‘long unsigned int [1]’} [-Warray-bounds=] 372 | *DD = t; | ~~~~^~~ test/testBitIO.cpp: In function ‘int main()’: test/testBitIO.cpp:719:26: note: at offset 8 into object ‘v’ of size 8 719 | uint64_t v = -1; | ^ In member function ‘void libmaus2::bitio::CompactOffsetOneArray::putBits(uint64_t, uint64_t)’, inlined from ‘void libmaus2::bitio::CompactOffsetOneArray::set(uint64_t, uint64_t)’ at ./libmaus2/bitio/CompactOffsetOneArray.hpp:59:46, inlined from ‘int main()’ at test/testBitIO.cpp:723:8: ./libmaus2/bitio/CompactOffsetOneArray.hpp:369:50: warning: array subscript 1 is outside array bounds of ‘uint64_t [1]’ {aka ‘long unsigned int [1]’} [-Warray-bounds=] 369 | uint64_t t = *DD; | ^ test/testBitIO.cpp: In function ‘int main()’: test/testBitIO.cpp:719:26: note: at offset 8 into object ‘v’ of size 8 719 | uint64_t v = -1; | ^ In member function ‘void libmaus2::bitio::CompactOffsetOneArray::putBits(uint64_t, uint64_t)’, inlined from ‘void libmaus2::bitio::CompactOffsetOneArray::set(uint64_t, uint64_t)’ at ./libmaus2/bitio/CompactOffsetOneArray.hpp:59:46, inlined from ‘int main()’ at test/testBitIO.cpp:723:8: ./libmaus2/bitio/CompactOffsetOneArray.hpp:372:45: warning: array subscript 1 is outside array bounds of ‘uint64_t [1]’ {aka ‘long unsigned int [1]’} [-Warray-bounds=] 372 | *DD = t; | ~~~~^~~ test/testBitIO.cpp: In function ‘int main()’: test/testBitIO.cpp:719:26: note: at offset 8 into object ‘v’ of size 8 719 | uint64_t v = -1; | ^ /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testBitIO test/testBitIO-testBitIO.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testBitIO test/testBitIO-testBitIO.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testbtree-testbtree.o `test -f 'test/testbtree.cpp' || echo './'`test/testbtree.cpp /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testbtree test/testbtree-testbtree.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testbtree test/testbtree-testbtree.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testBWTDyn-testBWTDyn.o `test -f 'test/testBWTDyn.cpp' || echo './'`test/testBWTDyn.cpp In file included from ./libmaus2/huffman/huffman.hpp:183, from test/testBWTDyn.cpp:22: ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 2]’: ./libmaus2/huffman/HuffmanSorting.hpp:860:55: required from here 860 | huffman::EncodeTable enctable ( root ); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:188: ./libmaus2/huffman/HuffmanSorting.hpp: In instantiation of ‘static void libmaus2::huffman::HuffmanSorting::uncompressHuffmanCoded(uint64_t*, uint64_t, uint64_t, uint64_t, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::HuffmanTreeNode*, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::EncodeTable&) [with unsigned int lookupwords = 2; uint64_t = long unsigned int]’: ./libmaus2/huffman/HuffmanSorting.hpp:1091:27: required from here 1091 | uncompressHuffmanCoded(acode.get(), 0 /* bit offset */, lowhalf /* syms */, firsthighsym, enctable,dectable,root.get(),dectable0,dectable1,enctable0,enctable1); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/huffman/HuffmanSorting.hpp:534:42: warning: variable ‘alldecoffset’ set but not used [-Wunused-but-set-variable=] 534 | uint64_t alldecoffset = highdecoffset; | ^~~~~~~~~~~~ ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 4]’: test/testBWTDyn.cpp:103:52: required from here 103 | ::libmaus2::huffman::EncodeTable<4> enctable(hnode); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testBWTDyn test/testBWTDyn-testBWTDyn.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testBWTDyn test/testBWTDyn-testBWTDyn.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testBWTHufDyn-testBWTHufDyn.o `test -f 'test/testBWTHufDyn.cpp' || echo './'`test/testBWTHufDyn.cpp In file included from ./libmaus2/huffman/huffman.hpp:183, from ./libmaus2/wavelet/DynamicHuffmanWaveletTree.hpp:24, from test/testBWTHufDyn.cpp:20: ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 2]’: ./libmaus2/huffman/HuffmanSorting.hpp:860:55: required from here 860 | huffman::EncodeTable enctable ( root ); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:188: ./libmaus2/huffman/HuffmanSorting.hpp: In instantiation of ‘static void libmaus2::huffman::HuffmanSorting::uncompressHuffmanCoded(uint64_t*, uint64_t, uint64_t, uint64_t, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::HuffmanTreeNode*, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::EncodeTable&) [with unsigned int lookupwords = 2; uint64_t = long unsigned int]’: ./libmaus2/huffman/HuffmanSorting.hpp:1091:27: required from here 1091 | uncompressHuffmanCoded(acode.get(), 0 /* bit offset */, lowhalf /* syms */, firsthighsym, enctable,dectable,root.get(),dectable0,dectable1,enctable0,enctable1); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/huffman/HuffmanSorting.hpp:534:42: warning: variable ‘alldecoffset’ set but not used [-Wunused-but-set-variable=] 534 | uint64_t alldecoffset = highdecoffset; | ^~~~~~~~~~~~ ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 1]’: ./libmaus2/wavelet/HuffmanWaveletTree.hpp:406:49: required from here 406 | : n(rn), aroot(raroot), root(aroot.get()), enctable(root), acode(racode), code(acode.get()), | ^~~~~~~~~~~~~~ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 4]’: test/testBWTHufDyn.cpp:120:52: required from here 120 | ::libmaus2::huffman::EncodeTable<4> enctable(hnode); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testBWTHufDyn test/testBWTHufDyn-testBWTHufDyn.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testBWTHufDyn test/testBWTHufDyn-testBWTHufDyn.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testDivSufSort-testDivSufSort.o `test -f 'test/testDivSufSort.cpp' || echo './'`test/testDivSufSort.cpp In file included from ./libmaus2/lf/LF.hpp:24, from ./libmaus2/fm/SampledSA.hpp:23, from ./libmaus2/lcp/LCP.hpp:27, from test/testDivSufSort.cpp:26: ./libmaus2/wavelet/WaveletTree.hpp: In instantiation of ‘std::pair<_symbol_type, long unsigned int> libmaus2::wavelet::WaveletTree<_rank_type, _symbol_type>::inverseSelect(uint64_t) const [with _rank_type = libmaus2::rank::ERank222BTemplate; _symbol_type = long unsigned int; uint64_t = long unsigned int]’: ./libmaus2/lf/LFBase.hpp:166:83: required from ‘uint64_t libmaus2::lf::LFBase<_wt_type>::operator()(uint64_t) const [with _wt_type = libmaus2::wavelet::WaveletTree, long unsigned int>; uint64_t = long unsigned int]’ 166 | std::pair< typename wt_type::symbol_type,uint64_t> const is = W->inverseSelect(r); | ~~~~~~~~~~~~~~~~^~~ ./libmaus2/fm/SampledSA.hpp:322:15: required from ‘libmaus2::fm::SimpleSampledSA::SimpleSampledSA(const lf_type*, uint64_t, bool) [with lf_type = libmaus2::lf::LF; uint64_t = long unsigned int]’ 322 | r = (*lf)(r); // LF mapping | ~~~~~^~~ test/testDivSufSort.cpp:71:67: required from here 71 | ::libmaus2::fm::SimpleSampledSA< ::libmaus2::lf::LF > SSA(&LF,2); | ^ ./libmaus2/wavelet/WaveletTree.hpp:1333:75: warning: variable ‘m’ set but not used [-Wunused-but-set-variable=] 1333 | uint64_t left = 0, right = n, offset = 0, m = (1ull<<(b-1)); | ^ /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testDivSufSort test/testDivSufSort-testDivSufSort.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testDivSufSort test/testDivSufSort-testDivSufSort.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testDNABitWords-testDNABitWords.o `test -f 'test/testDNABitWords.cpp' || echo './'`test/testDNABitWords.cpp /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testDNABitWords test/testDNABitWords-testDNABitWords.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testDNABitWords test/testDNABitWords-testDNABitWords.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testFastRead-testFastRead.o `test -f 'test/testFastRead.cpp' || echo './'`test/testFastRead.cpp In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/util/IntervalTree.hpp:25, from ./libmaus2/fastx/FastInterval.hpp:25, from ./libmaus2/fastx/FastAReader.hpp:31, from test/testFastRead.cpp:23: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testFastRead test/testFastRead-testFastRead.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testFastRead test/testFastRead-testFastRead.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testHuffman-testHuffman.o `test -f 'test/testHuffman.cpp' || echo './'`test/testHuffman.cpp In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/huffman/HuffmanTree.hpp:25, from test/testHuffman.cpp:27: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/huffman/huffman.hpp:183, from test/testHuffman.cpp:23: ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 2]’: ./libmaus2/huffman/HuffmanSorting.hpp:860:55: required from here 860 | huffman::EncodeTable enctable ( root ); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:188: ./libmaus2/huffman/HuffmanSorting.hpp: In instantiation of ‘static void libmaus2::huffman::HuffmanSorting::uncompressHuffmanCoded(uint64_t*, uint64_t, uint64_t, uint64_t, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::HuffmanTreeNode*, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::EncodeTable&) [with unsigned int lookupwords = 2; uint64_t = long unsigned int]’: ./libmaus2/huffman/HuffmanSorting.hpp:1091:27: required from here 1091 | uncompressHuffmanCoded(acode.get(), 0 /* bit offset */, lowhalf /* syms */, firsthighsym, enctable,dectable,root.get(),dectable0,dectable1,enctable0,enctable1); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/huffman/HuffmanSorting.hpp:534:42: warning: variable ‘alldecoffset’ set but not used [-Wunused-but-set-variable=] 534 | uint64_t alldecoffset = highdecoffset; | ^~~~~~~~~~~~ ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 1]’: ./libmaus2/wavelet/HuffmanWaveletTree.hpp:406:49: required from here 406 | : n(rn), aroot(raroot), root(aroot.get()), enctable(root), acode(racode), code(acode.get()), | ^~~~~~~~~~~~~~ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testHuffman test/testHuffman-testHuffman.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testHuffman test/testHuffman-testHuffman.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testIsa-testIsa.o `test -f 'test/testIsa.cpp' || echo './'`test/testIsa.cpp /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testIsa test/testIsa-testIsa.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testIsa test/testIsa-testIsa.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testkmp-testkmp.o `test -f 'test/testkmp.cpp' || echo './'`test/testkmp.cpp /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testkmp test/testkmp-testkmp.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testkmp test/testkmp-testkmp.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testlz-testlz.o `test -f 'test/testlz.cpp' || echo './'`test/testlz.cpp /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testlz test/testlz-testlz.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testlz test/testlz-testlz.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testRank-testRank.o `test -f 'test/testRank.cpp' || echo './'`test/testRank.cpp In file included from test/testRank.cpp:35: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testRank test/testRank-testRank.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testRank test/testRank-testRank.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testToWaveletTreeBits-testToWaveletTreeBits.o `test -f 'test/testToWaveletTreeBits.cpp' || echo './'`test/testToWaveletTreeBits.cpp /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testToWaveletTreeBits test/testToWaveletTreeBits-testToWaveletTreeBits.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testToWaveletTreeBits test/testToWaveletTreeBits-testToWaveletTreeBits.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testWaveletExternal-testWaveletExternal.o `test -f 'test/testWaveletExternal.cpp' || echo './'`test/testWaveletExternal.cpp In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/huffman/HuffmanTree.hpp:25, from ./libmaus2/wavelet/ImpExternalWaveletGeneratorCompactHuffman.hpp:33, from test/testWaveletExternal.cpp:28: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/wavelet/ExternalWaveletGenerator.hpp:34, from test/testWaveletExternal.cpp:20: ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 1]’: ./libmaus2/wavelet/ImpHuffmanWaveletTree.hpp:302:54: required from here 302 | : n(rn), sroot(rsroot), dicts(numnodes), root(0), enctable(sroot.get()), maxdepth(0), nodepos(rnodepos) | ^~~~~~~~~~~~~~~~~~~~~ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 2]’: ./libmaus2/huffman/HuffmanSorting.hpp:860:55: required from here 860 | huffman::EncodeTable enctable ( root ); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:188, from test/testWaveletExternal.cpp:101: ./libmaus2/huffman/HuffmanSorting.hpp: In instantiation of ‘static void libmaus2::huffman::HuffmanSorting::uncompressHuffmanCoded(uint64_t*, uint64_t, uint64_t, uint64_t, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::HuffmanTreeNode*, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::EncodeTable&) [with unsigned int lookupwords = 2; uint64_t = long unsigned int]’: ./libmaus2/huffman/HuffmanSorting.hpp:1091:27: required from here 1091 | uncompressHuffmanCoded(acode.get(), 0 /* bit offset */, lowhalf /* syms */, firsthighsym, enctable,dectable,root.get(),dectable0,dectable1,enctable0,enctable1); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/huffman/HuffmanSorting.hpp:534:42: warning: variable ‘alldecoffset’ set but not used [-Wunused-but-set-variable=] 534 | uint64_t alldecoffset = highdecoffset; | ^~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testWaveletExternal test/testWaveletExternal-testWaveletExternal.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testWaveletExternal test/testWaveletExternal-testWaveletExternal.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testTrie-testTrie.o `test -f 'test/testTrie.cpp' || echo './'`test/testTrie.cpp /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testTrie test/testTrie-testTrie.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testTrie test/testTrie-testTrie.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testbandedlcs-testbandedlcs.o `test -f 'test/testbandedlcs.cpp' || echo './'`test/testbandedlcs.cpp In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/util/IntervalTree.hpp:25, from ./libmaus2/fastx/FastInterval.hpp:25, from ./libmaus2/fastx/FastAReader.hpp:31, from test/testbandedlcs.cpp:23: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testbandedlcs test/testbandedlcs-testbandedlcs.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testbandedlcs test/testbandedlcs-testbandedlcs.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testbamwriter-testbamwriter.o `test -f 'test/testbamwriter.cpp' || echo './'`test/testbamwriter.cpp In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/bambam/BamAuxFilterVector.hpp:22, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:27, from ./libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from ./libmaus2/bambam/BamWriter.hpp:22, from test/testbamwriter.cpp:19: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/bambam/CigarStringParser.hpp:25, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ In file included from ./libmaus2/bambam/BamAlignmentDecoder.hpp:24, from ./libmaus2/bambam/BamDecoder.hpp:22, from test/testbamwriter.cpp:22: ./libmaus2/bambam/BamHeaderLowMem.hpp: In member function ‘void libmaus2::bambam::BamHeaderLowMem::setupFromText()’: ./libmaus2/bambam/BamHeaderLowMem.hpp:366:58: warning: variable ‘ln’ set but not used [-Wunused-but-set-variable=] 366 | uint64_t ln = 0; | ^~ /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testbamwriter test/testbamwriter-testbamwriter.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testbamwriter test/testbamwriter-testbamwriter.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testarraydecode-testarraydecode.o `test -f 'test/testarraydecode.cpp' || echo './'`test/testarraydecode.cpp /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testarraydecode test/testarraydecode-testarraydecode.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testarraydecode test/testarraydecode-testarraydecode.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testsnappy-testsnappy.o `test -f 'test/testsnappy.cpp' || echo './'`test/testsnappy.cpp /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testsnappy test/testsnappy-testsnappy.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testsnappy test/testsnappy-testsnappy.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testsnappyconcat-testsnappyconcat.o `test -f 'test/testsnappyconcat.cpp' || echo './'`test/testsnappyconcat.cpp /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testsnappyconcat test/testsnappyconcat-testsnappyconcat.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testsnappyconcat test/testsnappyconcat-testsnappyconcat.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testgunzip-testgunzip.o `test -f 'test/testgunzip.cpp' || echo './'`test/testgunzip.cpp /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testgunzip test/testgunzip-testgunzip.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testgunzip test/testgunzip-testgunzip.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testhashcollisions-testhashcollisions.o `test -f 'test/testhashcollisions.cpp' || echo './'`test/testhashcollisions.cpp /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testhashcollisions test/testhashcollisions-testhashcollisions.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testhashcollisions test/testhashcollisions-testhashcollisions.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testsimplebloomcollisions-testsimplebloomcollisions.o `test -f 'test/testsimplebloomcollisions.cpp' || echo './'`test/testsimplebloomcollisions.cpp In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/util/SimpleBloomFilter.hpp:25, from test/testsimplebloomcollisions.cpp:20: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testsimplebloomcollisions test/testsimplebloomcollisions-testsimplebloomcollisions.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testsimplebloomcollisions test/testsimplebloomcollisions-testsimplebloomcollisions.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testsimplehash-testsimplehash.o `test -f 'test/testsimplehash.cpp' || echo './'`test/testsimplehash.cpp /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testsimplehash test/testsimplehash-testsimplehash.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testsimplehash test/testsimplehash-testsimplehash.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testsimplecountinghash-testsimplecountinghash.o `test -f 'test/testsimplecountinghash.cpp' || echo './'`test/testsimplecountinghash.cpp /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testsimplecountinghash test/testsimplecountinghash-testsimplecountinghash.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testsimplecountinghash test/testsimplecountinghash-testsimplecountinghash.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testcachealignedalloc-testcachealignedalloc.o `test -f 'test/testcachealignedalloc.cpp' || echo './'`test/testcachealignedalloc.cpp /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testcachealignedalloc test/testcachealignedalloc-testcachealignedalloc.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testcachealignedalloc test/testcachealignedalloc-testcachealignedalloc.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testsyncfastreaderbase-testsyncfastreaderbase.o `test -f 'test/testsyncfastreaderbase.cpp' || echo './'`test/testsyncfastreaderbase.cpp /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testsyncfastreaderbase test/testsyncfastreaderbase-testsyncfastreaderbase.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testsyncfastreaderbase test/testsyncfastreaderbase-testsyncfastreaderbase.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testdl-testdl.o `test -f 'test/testdl.cpp' || echo './'`test/testdl.cpp /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testdl test/testdl-testdl.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testdl test/testdl-testdl.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testdifenc-testdifenc.o `test -f 'test/testdifenc.cpp' || echo './'`test/testdifenc.cpp /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testdifenc test/testdifenc-testdifenc.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testdifenc test/testdifenc-testdifenc.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testbwtmergeinternal-testbwtmergeinternal.o `test -f 'test/testbwtmergeinternal.cpp' || echo './'`test/testbwtmergeinternal.cpp /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testbwtmergeinternal test/testbwtmergeinternal-testbwtmergeinternal.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testbwtmergeinternal test/testbwtmergeinternal-testbwtmergeinternal.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testfastarewrite-testfastarewrite.o `test -f 'test/testfastarewrite.cpp' || echo './'`test/testfastarewrite.cpp In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/util/IntervalTree.hpp:25, from ./libmaus2/fastx/FastInterval.hpp:25, from ./libmaus2/fastx/FastAReader.hpp:31, from test/testfastarewrite.cpp:6: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testfastarewrite test/testfastarewrite-testfastarewrite.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testfastarewrite test/testfastarewrite-testfastarewrite.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testfastarecode-testfastarecode.o `test -f 'test/testfastarecode.cpp' || echo './'`test/testfastarecode.cpp In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/util/IntervalTree.hpp:25, from ./libmaus2/fastx/FastInterval.hpp:25, from ./libmaus2/fastx/FastAReader.hpp:31, from test/testfastarecode.cpp:24: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testfastarecode test/testfastarecode-testfastarecode.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testfastarecode test/testfastarecode-testfastarecode.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testbamtofastq-testbamtofastq.o `test -f 'test/testbamtofastq.cpp' || echo './'`test/testbamtofastq.cpp In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/bambam/BamAuxFilterVector.hpp:22, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:27, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testbamtofastq.cpp:19: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/bambam/CigarStringParser.hpp:25, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ In file included from ./libmaus2/bambam/BamAlignmentDecoder.hpp:24, from ./libmaus2/bambam/BamDecoder.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:23: ./libmaus2/bambam/BamHeaderLowMem.hpp: In member function ‘void libmaus2::bambam::BamHeaderLowMem::setupFromText()’: ./libmaus2/bambam/BamHeaderLowMem.hpp:366:58: warning: variable ‘ln’ set but not used [-Wunused-but-set-variable=] 366 | uint64_t ln = 0; | ^~ /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testbamtofastq test/testbamtofastq-testbamtofastq.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testbamtofastq test/testbamtofastq-testbamtofastq.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testbamrange-testbamrange.o `test -f 'test/testbamrange.cpp' || echo './'`test/testbamrange.cpp In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/bambam/BamAuxFilterVector.hpp:22, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:27, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from ./libmaus2/bambam/BamRangeDecoder.hpp:22, from test/testbamrange.cpp:20: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/bambam/CigarStringParser.hpp:25, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ In file included from ./libmaus2/bambam/BamAlignmentDecoder.hpp:24: ./libmaus2/bambam/BamHeaderLowMem.hpp: In member function ‘void libmaus2::bambam::BamHeaderLowMem::setupFromText()’: ./libmaus2/bambam/BamHeaderLowMem.hpp:366:58: warning: variable ‘ln’ set but not used [-Wunused-but-set-variable=] 366 | uint64_t ln = 0; | ^~ /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testbamrange test/testbamrange-testbamrange.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testbamrange test/testbamrange-testbamrange.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testbamdamage-testbamdamage.o `test -f 'test/testbamdamage.cpp' || echo './'`test/testbamdamage.cpp In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/bambam/BamAuxFilterVector.hpp:22, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:27, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from test/testbamdamage.cpp:3: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/bambam/CigarStringParser.hpp:25, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ In file included from ./libmaus2/bambam/BamAlignmentDecoder.hpp:24: ./libmaus2/bambam/BamHeaderLowMem.hpp: In member function ‘void libmaus2::bambam::BamHeaderLowMem::setupFromText()’: ./libmaus2/bambam/BamHeaderLowMem.hpp:366:58: warning: variable ‘ln’ set but not used [-Wunused-but-set-variable=] 366 | uint64_t ln = 0; | ^~ test/testbamdamage.cpp: In function ‘int main()’: test/testbamdamage.cpp:19:26: warning: variable ‘total’ set but not used [-Wunused-but-set-variable=] 19 | uint64_t total = 0; | ^~~~~ /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testbamdamage test/testbamdamage-testbamdamage.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testbamdamage test/testbamdamage-testbamdamage.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testgamma-testgamma.o `test -f 'test/testgamma.cpp' || echo './'`test/testgamma.cpp In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/util/IntervalTree.hpp:25, from ./libmaus2/util/GenericIntervalTree.hpp:23, from ./libmaus2/gamma/SparseGammaGapFileIndexDecoder.hpp:24, from ./libmaus2/gamma/SparseGammaGapFileIndexMultiDecoder.hpp:22, from ./libmaus2/gamma/SparseGammaGapConcatDecoder.hpp:22, from ./libmaus2/gamma/SparseGammaGapMerge.hpp:24, from test/testgamma.cpp:42: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from test/testgamma.cpp:1899: ./libmaus2/gamma/GammaFlaggedIntervalEncoder.hpp: In member function ‘void libmaus2::gamma::GammaFlaggedIntervalEncoder::flushInternal()’: ./libmaus2/gamma/GammaFlaggedIntervalEncoder.hpp:76:50: warning: variable ‘vsum’ set but not used [-Wunused-but-set-variable=] 76 | uint64_t vsum = pa[0].to-pa[0].from; | ^~~~ In file included from ./libmaus2/huffman/huffman.hpp:183, from ./libmaus2/huffman/CanonicalEncoder.hpp:26, from ./libmaus2/huffman/RLEncoder.hpp:25, from ./libmaus2/gamma/GammaPartitionEncoder.hpp:26, from test/testgamma.cpp:23: ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 2]’: ./libmaus2/huffman/HuffmanSorting.hpp:860:55: required from here 860 | huffman::EncodeTable enctable ( root ); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:188: ./libmaus2/huffman/HuffmanSorting.hpp: In instantiation of ‘static void libmaus2::huffman::HuffmanSorting::uncompressHuffmanCoded(uint64_t*, uint64_t, uint64_t, uint64_t, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::HuffmanTreeNode*, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::EncodeTable&) [with unsigned int lookupwords = 2; uint64_t = long unsigned int]’: ./libmaus2/huffman/HuffmanSorting.hpp:1091:27: required from here 1091 | uncompressHuffmanCoded(acode.get(), 0 /* bit offset */, lowhalf /* syms */, firsthighsym, enctable,dectable,root.get(),dectable0,dectable1,enctable0,enctable1); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/huffman/HuffmanSorting.hpp:534:42: warning: variable ‘alldecoffset’ set but not used [-Wunused-but-set-variable=] 534 | uint64_t alldecoffset = highdecoffset; | ^~~~~~~~~~~~ ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 1]’: ./libmaus2/huffman/CanonicalEncoder.hpp:219:116: required from here 219 | return ::libmaus2::huffman::EncodeTable<1>::unique_ptr_type(new ::libmaus2::huffman::EncodeTable<1>(Ptree.get())); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testgamma test/testgamma-testgamma.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testgamma test/testgamma-testgamma.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testcompact-testcompact.o `test -f 'test/testcompact.cpp' || echo './'`test/testcompact.cpp /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testcompact test/testcompact-testcompact.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testcompact test/testcompact-testcompact.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testbytetocompact-testbytetocompact.o `test -f 'test/testbytetocompact.cpp' || echo './'`test/testbytetocompact.cpp /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testbytetocompact test/testbytetocompact-testbytetocompact.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testbytetocompact test/testbytetocompact-testbytetocompact.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testscramtosam-testscramtosam.o `test -f 'test/testscramtosam.cpp' || echo './'`test/testscramtosam.cpp /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testscramtosam test/testscramtosam-testscramtosam.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testscramtosam test/testscramtosam-testscramtosam.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testpacdecode-testpacdecode.o `test -f 'test/testpacdecode.cpp' || echo './'`test/testpacdecode.cpp /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testpacdecode test/testpacdecode-testpacdecode.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testpacdecode test/testpacdecode-testpacdecode.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testutf8split-testutf8split.o `test -f 'test/testutf8split.cpp' || echo './'`test/testutf8split.cpp In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/huffman/HuffmanTree.hpp:25, from ./libmaus2/wavelet/ImpCompactHuffmanWaveletTree.hpp:26, from test/testutf8split.cpp:31: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/huffman/huffman.hpp:183, from test/testutf8split.cpp:27: ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 2]’: ./libmaus2/huffman/HuffmanSorting.hpp:860:55: required from here 860 | huffman::EncodeTable enctable ( root ); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:188: ./libmaus2/huffman/HuffmanSorting.hpp: In instantiation of ‘static void libmaus2::huffman::HuffmanSorting::uncompressHuffmanCoded(uint64_t*, uint64_t, uint64_t, uint64_t, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::HuffmanTreeNode*, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::EncodeTable&) [with unsigned int lookupwords = 2; uint64_t = long unsigned int]’: ./libmaus2/huffman/HuffmanSorting.hpp:1091:27: required from here 1091 | uncompressHuffmanCoded(acode.get(), 0 /* bit offset */, lowhalf /* syms */, firsthighsym, enctable,dectable,root.get(),dectable0,dectable1,enctable0,enctable1); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/huffman/HuffmanSorting.hpp:534:42: warning: variable ‘alldecoffset’ set but not used [-Wunused-but-set-variable=] 534 | uint64_t alldecoffset = highdecoffset; | ^~~~~~~~~~~~ ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 1]’: ./libmaus2/wavelet/ImpHuffmanWaveletTree.hpp:302:54: required from here 302 | : n(rn), sroot(rsroot), dicts(numnodes), root(0), enctable(sroot.get()), maxdepth(0), nodepos(rnodepos) | ^~~~~~~~~~~~~~~~~~~~~ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from test/testutf8split.cpp:35: ./libmaus2/wavelet/Utf8ToImpHuffmanWaveletTree.hpp: In instantiation of ‘static void libmaus2::wavelet::Utf8ToImpHuffmanWaveletTree::constructWaveletTree(const std::string&, const std::string&, libmaus2::huffman::HuffmanTreeNode::shared_ptr_type, uint64_t) [with bool radixsort = true; std::string = std::__cxx11::basic_string; libmaus2::huffman::HuffmanTreeNode::shared_ptr_type = std::shared_ptr; uint64_t = long unsigned int]’: test/testutf8split.cpp:211:79: required from here 211 | ::libmaus2::wavelet::Utf8ToImpHuffmanWaveletTree::constructWaveletTree(fn,fn+".hwt",::libmaus2::huffman::HuffmanTreeNode::shared_ptr_type(),numthreads); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpHuffmanWaveletTree.hpp:310:90: warning: variable ‘l_numsyms0’ set but not used [-Wunused-but-set-variable=] 310 | uint64_t l_numsyms0 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpHuffmanWaveletTree.hpp:315:90: warning: variable ‘r_numsyms1’ set but not used [-Wunused-but-set-variable=] 315 | uint64_t r_numsyms1 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpHuffmanWaveletTree.hpp:195:66: warning: variable ‘numsyms1’ set but not used [-Wunused-but-set-variable=] 195 | uint64_t numsyms1 = 0; | ^~~~~~~~ In file included from test/testutf8split.cpp:205: ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp: In instantiation of ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTree(const std::string&, const std::string&, const libmaus2::huffman::HuffmanTree*, uint64_t) [with bool radixsort = true; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’: test/testutf8split.cpp:224:86: required from here 224 | ::libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTree(fn,fn+".hwt",H,numthreads); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:334:90: warning: variable ‘l_numsyms0’ set but not used [-Wunused-but-set-variable=] 334 | uint64_t l_numsyms0 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:339:90: warning: variable ‘r_numsyms1’ set but not used [-Wunused-but-set-variable=] 339 | uint64_t r_numsyms1 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:219:66: warning: variable ‘numsyms1’ set but not used [-Wunused-but-set-variable=] 219 | uint64_t numsyms1 = 0; | ^~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testutf8split test/testutf8split-testutf8split.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testutf8split test/testutf8split-testutf8split.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testcirchash-testcirchash.o `test -f 'test/testcirchash.cpp' || echo './'`test/testcirchash.cpp In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/bambam/BamAuxFilterVector.hpp:22, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:27, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testcirchash.cpp:20: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/bambam/CigarStringParser.hpp:25, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ In file included from ./libmaus2/bambam/BamAlignmentDecoder.hpp:24, from ./libmaus2/bambam/BamDecoder.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:23: ./libmaus2/bambam/BamHeaderLowMem.hpp: In member function ‘void libmaus2::bambam::BamHeaderLowMem::setupFromText()’: ./libmaus2/bambam/BamHeaderLowMem.hpp:366:58: warning: variable ‘ln’ set but not used [-Wunused-but-set-variable=] 366 | uint64_t ln = 0; | ^~ /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testcirchash test/testcirchash-testcirchash.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testcirchash test/testcirchash-testcirchash.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testrmmtree-testrmmtree.o `test -f 'test/testrmmtree.cpp' || echo './'`test/testrmmtree.cpp In file included from ./libmaus2/huffman/huffman.hpp:183, from ./libmaus2/util/ImpCompactNumberArray.hpp:26, from ./libmaus2/rmq/RMMTree.hpp:22, from test/testrmmtree.cpp:25: ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 2]’: ./libmaus2/huffman/HuffmanSorting.hpp:860:55: required from here 860 | huffman::EncodeTable enctable ( root ); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:188: ./libmaus2/huffman/HuffmanSorting.hpp: In instantiation of ‘static void libmaus2::huffman::HuffmanSorting::uncompressHuffmanCoded(uint64_t*, uint64_t, uint64_t, uint64_t, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::HuffmanTreeNode*, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::EncodeTable&) [with unsigned int lookupwords = 2; uint64_t = long unsigned int]’: ./libmaus2/huffman/HuffmanSorting.hpp:1091:27: required from here 1091 | uncompressHuffmanCoded(acode.get(), 0 /* bit offset */, lowhalf /* syms */, firsthighsym, enctable,dectable,root.get(),dectable0,dectable1,enctable0,enctable1); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/huffman/HuffmanSorting.hpp:534:42: warning: variable ‘alldecoffset’ set but not used [-Wunused-but-set-variable=] 534 | uint64_t alldecoffset = highdecoffset; | ^~~~~~~~~~~~ ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 1]’: ./libmaus2/wavelet/ImpHuffmanWaveletTree.hpp:302:54: required from here 302 | : n(rn), sroot(rsroot), dicts(numnodes), root(0), enctable(sroot.get()), maxdepth(0), nodepos(rnodepos) | ^~~~~~~~~~~~~~~~~~~~~ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testrmmtree test/testrmmtree-testrmmtree.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testrmmtree test/testrmmtree-testrmmtree.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testcst-testcst.o `test -f 'test/testcst.cpp' || echo './'`test/testcst.cpp In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/huffman/HuffmanTree.hpp:25, from ./libmaus2/wavelet/ImpCompactHuffmanWaveletTree.hpp:26, from ./libmaus2/lf/ImpCompactHuffmanWaveletLF.hpp:23, from ./libmaus2/suffixtree/CompressedSuffixTree.hpp:22, from test/testcst.cpp:21: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/huffman/huffman.hpp:183, from ./libmaus2/util/ImpCompactNumberArray.hpp:26, from ./libmaus2/rmq/RMMTree.hpp:22, from ./libmaus2/suffixtree/CompressedSuffixTree.hpp:26: ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 2]’: ./libmaus2/huffman/HuffmanSorting.hpp:860:55: required from here 860 | huffman::EncodeTable enctable ( root ); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:188: ./libmaus2/huffman/HuffmanSorting.hpp: In instantiation of ‘static void libmaus2::huffman::HuffmanSorting::uncompressHuffmanCoded(uint64_t*, uint64_t, uint64_t, uint64_t, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::HuffmanTreeNode*, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::EncodeTable&) [with unsigned int lookupwords = 2; uint64_t = long unsigned int]’: ./libmaus2/huffman/HuffmanSorting.hpp:1091:27: required from here 1091 | uncompressHuffmanCoded(acode.get(), 0 /* bit offset */, lowhalf /* syms */, firsthighsym, enctable,dectable,root.get(),dectable0,dectable1,enctable0,enctable1); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/huffman/HuffmanSorting.hpp:534:42: warning: variable ‘alldecoffset’ set but not used [-Wunused-but-set-variable=] 534 | uint64_t alldecoffset = highdecoffset; | ^~~~~~~~~~~~ ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 1]’: ./libmaus2/wavelet/ImpHuffmanWaveletTree.hpp:302:54: required from here 302 | : n(rn), sroot(rsroot), dicts(numnodes), root(0), enctable(sroot.get()), maxdepth(0), nodepos(rnodepos) | ^~~~~~~~~~~~~~~~~~~~~ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testcst test/testcst-testcst.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testcst test/testcst-testcst.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testbamcmp-testbamcmp.o `test -f 'test/testbamcmp.cpp' || echo './'`test/testbamcmp.cpp In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/bambam/BamAuxFilterVector.hpp:22, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:27, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from test/testbamcmp.cpp:19: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/bambam/CigarStringParser.hpp:25, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ In file included from ./libmaus2/bambam/BamAlignmentDecoder.hpp:24: ./libmaus2/bambam/BamHeaderLowMem.hpp: In member function ‘void libmaus2::bambam::BamHeaderLowMem::setupFromText()’: ./libmaus2/bambam/BamHeaderLowMem.hpp:366:58: warning: variable ‘ln’ set but not used [-Wunused-but-set-variable=] 366 | uint64_t ln = 0; | ^~ /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testbamcmp test/testbamcmp-testbamcmp.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testbamcmp test/testbamcmp-testbamcmp.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testbamdif-testbamdif.o `test -f 'test/testbamdif.cpp' || echo './'`test/testbamdif.cpp In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/bambam/BamAuxFilterVector.hpp:22, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:27, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from test/testbamdif.cpp:19: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/bambam/CigarStringParser.hpp:25, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ In file included from ./libmaus2/bambam/BamAlignmentDecoder.hpp:24: ./libmaus2/bambam/BamHeaderLowMem.hpp: In member function ‘void libmaus2::bambam::BamHeaderLowMem::setupFromText()’: ./libmaus2/bambam/BamHeaderLowMem.hpp:366:58: warning: variable ‘ln’ set but not used [-Wunused-but-set-variable=] 366 | uint64_t ln = 0; | ^~ /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testbamdif test/testbamdif-testbamdif.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testbamdif test/testbamdif-testbamdif.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testqreorder-testqreorder.o `test -f 'test/testqreorder.cpp' || echo './'`test/testqreorder.cpp /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testqreorder test/testqreorder-testqreorder.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testqreorder test/testqreorder-testqreorder.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testfqbgzf-testfqbgzf.o `test -f 'test/testfqbgzf.cpp' || echo './'`test/testfqbgzf.cpp In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/util/IntervalTree.hpp:25, from ./libmaus2/fastx/FastInterval.hpp:25, from ./libmaus2/fastx/FastQReader.hpp:27, from ./libmaus2/fastx/StreamFastQReader.hpp:23, from test/testfqbgzf.cpp:23: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from test/testfqbgzf.cpp:38: ./libmaus2/clustering/KMeans.hpp: In static member function ‘static double libmaus2::clustering::KMeans::silhouette(const std::vector&, const std::vector&)’: ./libmaus2/clustering/KMeans.hpp:596:50: warning: variable ‘clusters’ set but not used [-Wunused-but-set-variable=] 596 | double clusters = 0.0; | ^~~~~~~~ ./libmaus2/clustering/KMeans.hpp: In static member function ‘static double libmaus2::clustering::KMeans::silhouette(const std::vector >&, const std::vector >&)’: ./libmaus2/clustering/KMeans.hpp:672:50: warning: variable ‘clusters’ set but not used [-Wunused-but-set-variable=] 672 | double clusters = 0.0; | ^~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testfqbgzf test/testfqbgzf-testfqbgzf.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testfqbgzf test/testfqbgzf-testfqbgzf.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testcompactfastrandom-testcompactfastrandom.o `test -f 'test/testcompactfastrandom.cpp' || echo './'`test/testcompactfastrandom.cpp In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/util/IntervalTree.hpp:25, from ./libmaus2/aio/FileFragment.hpp:27, from ./libmaus2/aio/ReorderConcatGenericInput.hpp:24, from ./libmaus2/fastx/CompactFastDecoder.hpp:22, from test/testcompactfastrandom.cpp:1: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testcompactfastrandom test/testcompactfastrandom-testcompactfastrandom.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testcompactfastrandom test/testcompactfastrandom-testcompactfastrandom.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testbamindex-testbamindex.o `test -f 'test/testbamindex.cpp' || echo './'`test/testbamindex.cpp In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/bambam/BamAuxFilterVector.hpp:22, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:27, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamIndexGenerator.hpp:31, from test/testbamindex.cpp:21: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/bambam/CigarStringParser.hpp:25, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ In file included from ./libmaus2/bambam/BamAlignmentDecoder.hpp:24, from ./libmaus2/bambam/BamDecoder.hpp:22, from test/testbamindex.cpp:23: ./libmaus2/bambam/BamHeaderLowMem.hpp: In member function ‘void libmaus2::bambam::BamHeaderLowMem::setupFromText()’: ./libmaus2/bambam/BamHeaderLowMem.hpp:366:58: warning: variable ‘ln’ set but not used [-Wunused-but-set-variable=] 366 | uint64_t ln = 0; | ^~ /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testbamindex test/testbamindex-testbamindex.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testbamindex test/testbamindex-testbamindex.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testbamrewrite-testbamrewrite.o `test -f 'test/testbamrewrite.cpp' || echo './'`test/testbamrewrite.cpp In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/bambam/BamAuxFilterVector.hpp:22, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:27, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from ./libmaus2/bambam/BamParallelRewrite.hpp:23, from test/testbamrewrite.cpp:21: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/bambam/CigarStringParser.hpp:25, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ In file included from ./libmaus2/bambam/BamAlignmentDecoder.hpp:24: ./libmaus2/bambam/BamHeaderLowMem.hpp: In member function ‘void libmaus2::bambam::BamHeaderLowMem::setupFromText()’: ./libmaus2/bambam/BamHeaderLowMem.hpp:366:58: warning: variable ‘ln’ set but not used [-Wunused-but-set-variable=] 366 | uint64_t ln = 0; | ^~ /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testbamrewrite test/testbamrewrite-testbamrewrite.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testbamrewrite test/testbamrewrite-testbamrewrite.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testfastqstream-testfastqstream.o `test -f 'test/testfastqstream.cpp' || echo './'`test/testfastqstream.cpp In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/util/IntervalTree.hpp:25, from ./libmaus2/fastx/FastInterval.hpp:25, from ./libmaus2/fastx/FastQReader.hpp:27, from ./libmaus2/fastx/StreamFastQReader.hpp:23, from test/testfastqstream.cpp:20: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testfastqstream test/testfastqstream-testfastqstream.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testfastqstream test/testfastqstream-testfastqstream.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testsort-testsort.o `test -f 'test/testsort.cpp' || echo './'`test/testsort.cpp In file included from test/testsort.cpp:22: ./libmaus2/huffman/LFRankPosEncoder.hpp: In member function ‘void libmaus2::huffman::LFRankPosEncoder::flush()’: ./libmaus2/huffman/LFRankPosEncoder.hpp:455:50: warning: variable ‘nummeta’ set but not used [-Wunused-but-set-variable=] 455 | uint64_t nummeta = 0; | ^~~~~~~ In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/util/IntervalTree.hpp:25, from ./libmaus2/aio/FileFragment.hpp:27, from ./libmaus2/sorting/PairFileSorting.hpp:27, from test/testsort.cpp:605: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/huffman/huffman.hpp:183, from ./libmaus2/huffman/CanonicalEncoder.hpp:26, from ./libmaus2/huffman/LFSupportDecoder.hpp:33, from test/testsort.cpp:20: ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 2]’: ./libmaus2/huffman/HuffmanSorting.hpp:860:55: required from here 860 | huffman::EncodeTable enctable ( root ); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:188: ./libmaus2/huffman/HuffmanSorting.hpp: In instantiation of ‘static void libmaus2::huffman::HuffmanSorting::uncompressHuffmanCoded(uint64_t*, uint64_t, uint64_t, uint64_t, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::HuffmanTreeNode*, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::EncodeTable&) [with unsigned int lookupwords = 2; uint64_t = long unsigned int]’: ./libmaus2/huffman/HuffmanSorting.hpp:1091:27: required from here 1091 | uncompressHuffmanCoded(acode.get(), 0 /* bit offset */, lowhalf /* syms */, firsthighsym, enctable,dectable,root.get(),dectable0,dectable1,enctable0,enctable1); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/huffman/HuffmanSorting.hpp:534:42: warning: variable ‘alldecoffset’ set but not used [-Wunused-but-set-variable=] 534 | uint64_t alldecoffset = highdecoffset; | ^~~~~~~~~~~~ ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 1]’: ./libmaus2/huffman/CanonicalEncoder.hpp:219:116: required from here 219 | return ::libmaus2::huffman::EncodeTable<1>::unique_ptr_type(new ::libmaus2::huffman::EncodeTable<1>(Ptree.get())); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testsort test/testsort-testsort.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testsort test/testsort-testsort.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testexternalsort-testexternalsort.o `test -f 'test/testexternalsort.cpp' || echo './'`test/testexternalsort.cpp /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testexternalsort test/testexternalsort-testexternalsort.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testexternalsort test/testexternalsort-testexternalsort.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testcollatespeed-testcollatespeed.o `test -f 'test/testcollatespeed.cpp' || echo './'`test/testcollatespeed.cpp In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/bambam/BamAuxFilterVector.hpp:22, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:27, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from test/testcollatespeed.cpp:21: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/bambam/CigarStringParser.hpp:25, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ In file included from ./libmaus2/bambam/BamAlignmentDecoder.hpp:24: ./libmaus2/bambam/BamHeaderLowMem.hpp: In member function ‘void libmaus2::bambam::BamHeaderLowMem::setupFromText()’: ./libmaus2/bambam/BamHeaderLowMem.hpp:366:58: warning: variable ‘ln’ set but not used [-Wunused-but-set-variable=] 366 | uint64_t ln = 0; | ^~ /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testcollatespeed test/testcollatespeed-testcollatespeed.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testcollatespeed test/testcollatespeed-testcollatespeed.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testbamheaderparser-testbamheaderparser.o `test -f 'test/testbamheaderparser.cpp' || echo './'`test/testbamheaderparser.cpp In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/bambam/BamAuxFilterVector.hpp:22, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:27, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from ./libmaus2/bambam/BamRangeDecoder.hpp:22, from test/testbamheaderparser.cpp:20: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/bambam/CigarStringParser.hpp:25, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ In file included from ./libmaus2/bambam/BamAlignmentDecoder.hpp:24: ./libmaus2/bambam/BamHeaderLowMem.hpp: In member function ‘void libmaus2::bambam::BamHeaderLowMem::setupFromText()’: ./libmaus2/bambam/BamHeaderLowMem.hpp:366:58: warning: variable ‘ln’ set but not used [-Wunused-but-set-variable=] 366 | uint64_t ln = 0; | ^~ /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testbamheaderparser test/testbamheaderparser-testbamheaderparser.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testbamheaderparser test/testbamheaderparser-testbamheaderparser.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testbammergecoordinate-testbammergecoordinate.o `test -f 'test/testbammergecoordinate.cpp' || echo './'`test/testbammergecoordinate.cpp In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/bambam/BamAuxFilterVector.hpp:22, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:27, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamCatHeader.hpp:22, from ./libmaus2/bambam/BamMergeCoordinate.hpp:22, from test/testbammergecoordinate.cpp:20: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/bambam/CigarStringParser.hpp:25, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ In file included from ./libmaus2/bambam/BamAlignmentDecoder.hpp:24, from ./libmaus2/bambam/BamDecoder.hpp:22, from ./libmaus2/bambam/BamCatHeader.hpp:23: ./libmaus2/bambam/BamHeaderLowMem.hpp: In member function ‘void libmaus2::bambam::BamHeaderLowMem::setupFromText()’: ./libmaus2/bambam/BamHeaderLowMem.hpp:366:58: warning: variable ‘ln’ set but not used [-Wunused-but-set-variable=] 366 | uint64_t ln = 0; | ^~ /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testbammergecoordinate test/testbammergecoordinate-testbammergecoordinate.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testbammergecoordinate test/testbammergecoordinate-testbammergecoordinate.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testbammergecollate-testbammergecollate.o `test -f 'test/testbammergecollate.cpp' || echo './'`test/testbammergecollate.cpp In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/bambam/BamAuxFilterVector.hpp:22, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:27, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testbammergecollate.cpp:19: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/bambam/CigarStringParser.hpp:25, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ In file included from ./libmaus2/bambam/BamAlignmentDecoder.hpp:24, from ./libmaus2/bambam/BamDecoder.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:23: ./libmaus2/bambam/BamHeaderLowMem.hpp: In member function ‘void libmaus2::bambam::BamHeaderLowMem::setupFromText()’: ./libmaus2/bambam/BamHeaderLowMem.hpp:366:58: warning: variable ‘ln’ set but not used [-Wunused-but-set-variable=] 366 | uint64_t ln = 0; | ^~ /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testbammergecollate test/testbammergecollate-testbammergecollate.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testbammergecollate test/testbammergecollate-testbammergecollate.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testbammergequeryname-testbammergequeryname.o `test -f 'test/testbammergequeryname.cpp' || echo './'`test/testbammergequeryname.cpp In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/bambam/BamAuxFilterVector.hpp:22, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:27, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamCatHeader.hpp:22, from ./libmaus2/bambam/BamMergeQueryName.hpp:22, from test/testbammergequeryname.cpp:20: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/bambam/CigarStringParser.hpp:25, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ In file included from ./libmaus2/bambam/BamAlignmentDecoder.hpp:24, from ./libmaus2/bambam/BamDecoder.hpp:22, from ./libmaus2/bambam/BamCatHeader.hpp:23: ./libmaus2/bambam/BamHeaderLowMem.hpp: In member function ‘void libmaus2::bambam::BamHeaderLowMem::setupFromText()’: ./libmaus2/bambam/BamHeaderLowMem.hpp:366:58: warning: variable ‘ln’ set but not used [-Wunused-but-set-variable=] 366 | uint64_t ln = 0; | ^~ /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testbammergequeryname test/testbammergequeryname-testbammergequeryname.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testbammergequeryname test/testbammergequeryname-testbammergequeryname.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testbamcat-testbamcat.o `test -f 'test/testbamcat.cpp' || echo './'`test/testbamcat.cpp In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/bambam/BamAuxFilterVector.hpp:22, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:27, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamCatHeader.hpp:22, from ./libmaus2/bambam/BamCat.hpp:22, from test/testbamcat.cpp:20: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/bambam/CigarStringParser.hpp:25, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ In file included from ./libmaus2/bambam/BamAlignmentDecoder.hpp:24, from ./libmaus2/bambam/BamDecoder.hpp:22, from ./libmaus2/bambam/BamCatHeader.hpp:23: ./libmaus2/bambam/BamHeaderLowMem.hpp: In member function ‘void libmaus2::bambam::BamHeaderLowMem::setupFromText()’: ./libmaus2/bambam/BamHeaderLowMem.hpp:366:58: warning: variable ‘ln’ set but not used [-Wunused-but-set-variable=] 366 | uint64_t ln = 0; | ^~ /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testbamcat test/testbamcat-testbamcat.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testbamcat test/testbamcat-testbamcat.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testautoarray2d-testautoarray2d.o `test -f 'test/testautoarray2d.cpp' || echo './'`test/testautoarray2d.cpp /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testautoarray2d test/testautoarray2d-testautoarray2d.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testautoarray2d test/testautoarray2d-testautoarray2d.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testhist-testhist.o `test -f 'test/testhist.cpp' || echo './'`test/testhist.cpp /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testhist test/testhist-testhist.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testhist test/testhist-testhist.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testfastaparse-testfastaparse.o `test -f 'test/testfastaparse.cpp' || echo './'`test/testfastaparse.cpp In file included from test/testfastaparse.cpp:27: ./libmaus2/wavelet/DynamicWaveletTree.hpp: In instantiation of ‘void libmaus2::wavelet::DynamicWaveletTree<_k, _w>::remove(uint64_t) [with unsigned int _k = 8; unsigned int _w = 8; uint64_t = long unsigned int]’: test/testfastaparse.cpp:115:15: required from here 115 | D.remove(delpos); | ~~~~~~~~^~~~~~~~ ./libmaus2/wavelet/DynamicWaveletTree.hpp:199:42: warning: variable ‘m’ set but not used [-Wunused-but-set-variable=] 199 | uint64_t m = (1ull << (b-1)); | ^ /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testfastaparse test/testfastaparse-testfastaparse.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testfastaparse test/testfastaparse-testfastaparse.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testvalidatebamindex-testvalidatebamindex.o `test -f 'test/testvalidatebamindex.cpp' || echo './'`test/testvalidatebamindex.cpp In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/bambam/BamAuxFilterVector.hpp:22, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:27, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamIndexGenerator.hpp:31, from test/testvalidatebamindex.cpp:21: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/bambam/CigarStringParser.hpp:25, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ In file included from ./libmaus2/bambam/BamAlignmentDecoder.hpp:24, from ./libmaus2/bambam/BamDecoder.hpp:22, from test/testvalidatebamindex.cpp:23: ./libmaus2/bambam/BamHeaderLowMem.hpp: In member function ‘void libmaus2::bambam::BamHeaderLowMem::setupFromText()’: ./libmaus2/bambam/BamHeaderLowMem.hpp:366:58: warning: variable ‘ln’ set but not used [-Wunused-but-set-variable=] 366 | uint64_t ln = 0; | ^~ /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testvalidatebamindex test/testvalidatebamindex-testvalidatebamindex.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testvalidatebamindex test/testvalidatebamindex-testvalidatebamindex.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testeditdistance-testeditdistance.o `test -f 'test/testeditdistance.cpp' || echo './'`test/testeditdistance.cpp In file included from ./libmaus2/lcs/EditDistanceTraceContainer.hpp:22, from ./libmaus2/lcs/EditDistance.hpp:24, from ./libmaus2/lcs/MetaEditDistance.hpp:22, from test/testeditdistance.cpp:20: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testeditdistance test/testeditdistance-testeditdistance.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testeditdistance test/testeditdistance-testeditdistance.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testsimplethreadpool-testsimplethreadpool.o `test -f 'test/testsimplethreadpool.cpp' || echo './'`test/testsimplethreadpool.cpp /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testsimplethreadpool test/testsimplethreadpool-testsimplethreadpool.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testsimplethreadpool test/testsimplethreadpool-testsimplethreadpool.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testsimplethreadpoolbamdecode-testsimplethreadpoolbamdecode.o `test -f 'test/testsimplethreadpoolbamdecode.cpp' || echo './'`test/testsimplethreadpoolbamdecode.cpp In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/bambam/BamAuxFilterVector.hpp:22, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:27, from ./libmaus2/bambam/BamAlignment.hpp:24, from test/testsimplethreadpoolbamdecode.cpp:19: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/bambam/CigarStringParser.hpp:25, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ In file included from ./libmaus2/bambam/BamAlignmentDecoder.hpp:24, from ./libmaus2/bambam/BamDecoder.hpp:22, from test/testsimplethreadpoolbamdecode.cpp:21: ./libmaus2/bambam/BamHeaderLowMem.hpp: In member function ‘void libmaus2::bambam::BamHeaderLowMem::setupFromText()’: ./libmaus2/bambam/BamHeaderLowMem.hpp:366:58: warning: variable ‘ln’ set but not used [-Wunused-but-set-variable=] 366 | uint64_t ln = 0; | ^~ /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testsimplethreadpoolbamdecode test/testsimplethreadpoolbamdecode-testsimplethreadpoolbamdecode.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testsimplethreadpoolbamdecode test/testsimplethreadpoolbamdecode-testsimplethreadpoolbamdecode.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testgaparraybyte-testgaparraybyte.o `test -f 'test/testgaparraybyte.cpp' || echo './'`test/testgaparraybyte.cpp In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/util/IntervalTree.hpp:25, from ./libmaus2/huffman/GapDecoder.hpp:26, from ./libmaus2/huffman/GapEncoder.hpp:25, from ./libmaus2/suffixsort/GapArrayByte.hpp:25, from test/testgaparraybyte.cpp:24: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/suffixsort/GapArrayByte.hpp:29: ./libmaus2/util/AtomicArray.hpp: At global scope: ./libmaus2/util/AtomicArray.hpp:45:43: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 45 | AtomicArray(AtomicArray const & O) = delete; | ^~~~~~~~~~~~~~~~~ ./libmaus2/util/AtomicArray.hpp:45:43: note: remove the ‘< >’ ./libmaus2/suffixsort/GapArrayByte.hpp: In member function ‘void libmaus2::suffixsort::GapArrayByte::flush()’: ./libmaus2/suffixsort/GapArrayByte.hpp:134:42: warning: variable ‘overflowcnt’ set but not used [-Wunused-but-set-variable=] 134 | uint64_t overflowcnt = 0; | ^~~~~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:183, from ./libmaus2/huffman/CanonicalEncoder.hpp:26, from ./libmaus2/huffman/GapEncoder.hpp:23: ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 2]’: ./libmaus2/huffman/HuffmanSorting.hpp:860:55: required from here 860 | huffman::EncodeTable enctable ( root ); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:188: ./libmaus2/huffman/HuffmanSorting.hpp: In instantiation of ‘static void libmaus2::huffman::HuffmanSorting::uncompressHuffmanCoded(uint64_t*, uint64_t, uint64_t, uint64_t, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::HuffmanTreeNode*, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::EncodeTable&) [with unsigned int lookupwords = 2; uint64_t = long unsigned int]’: ./libmaus2/huffman/HuffmanSorting.hpp:1091:27: required from here 1091 | uncompressHuffmanCoded(acode.get(), 0 /* bit offset */, lowhalf /* syms */, firsthighsym, enctable,dectable,root.get(),dectable0,dectable1,enctable0,enctable1); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/huffman/HuffmanSorting.hpp:534:42: warning: variable ‘alldecoffset’ set but not used [-Wunused-but-set-variable=] 534 | uint64_t alldecoffset = highdecoffset; | ^~~~~~~~~~~~ ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 1]’: ./libmaus2/huffman/CanonicalEncoder.hpp:219:116: required from here 219 | return ::libmaus2::huffman::EncodeTable<1>::unique_ptr_type(new ::libmaus2::huffman::EncodeTable<1>(Ptree.get())); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testgaparraybyte test/testgaparraybyte-testgaparraybyte.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testgaparraybyte test/testgaparraybyte-testgaparraybyte.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testzlibconcat-testzlibconcat.o `test -f 'test/testzlibconcat.cpp' || echo './'`test/testzlibconcat.cpp /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testzlibconcat test/testzlibconcat-testzlibconcat.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testzlibconcat test/testzlibconcat-testzlibconcat.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testsimplecompressblock-testsimplecompressblock.o `test -f 'test/testsimplecompressblock.cpp' || echo './'`test/testsimplecompressblock.cpp /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testsimplecompressblock test/testsimplecompressblock-testsimplecompressblock.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testsimplecompressblock test/testsimplecompressblock-testsimplecompressblock.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testfaindex-testfaindex.o `test -f 'test/testfaindex.cpp' || echo './'`test/testfaindex.cpp /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testfaindex test/testfaindex-testfaindex.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testfaindex test/testfaindex-testfaindex.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testfastablockrecode-testfastablockrecode.o `test -f 'test/testfastablockrecode.cpp' || echo './'`test/testfastablockrecode.cpp In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/bambam/BamAuxFilterVector.hpp:22, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:27, from ./libmaus2/fastx/FastaBPSequenceDecoder.hpp:25, from ./libmaus2/fastx/FastaBPDecoder.hpp:22, from test/testfastablockrecode.cpp:21: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/bambam/CigarStringParser.hpp:25, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testfastablockrecode test/testfastablockrecode-testfastablockrecode.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testfastablockrecode test/testfastablockrecode-testfastablockrecode.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testrlhist-testrlhist.o `test -f 'test/testrlhist.cpp' || echo './'`test/testrlhist.cpp In file included from ./libmaus2/huffman/huffman.hpp:183, from ./libmaus2/huffman/CanonicalEncoder.hpp:26, from ./libmaus2/huffman/RLDecoder.hpp:27, from test/testrlhist.cpp:20: ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 2]’: ./libmaus2/huffman/HuffmanSorting.hpp:860:55: required from here 860 | huffman::EncodeTable enctable ( root ); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:188: ./libmaus2/huffman/HuffmanSorting.hpp: In instantiation of ‘static void libmaus2::huffman::HuffmanSorting::uncompressHuffmanCoded(uint64_t*, uint64_t, uint64_t, uint64_t, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::HuffmanTreeNode*, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::EncodeTable&) [with unsigned int lookupwords = 2; uint64_t = long unsigned int]’: ./libmaus2/huffman/HuffmanSorting.hpp:1091:27: required from here 1091 | uncompressHuffmanCoded(acode.get(), 0 /* bit offset */, lowhalf /* syms */, firsthighsym, enctable,dectable,root.get(),dectable0,dectable1,enctable0,enctable1); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/huffman/HuffmanSorting.hpp:534:42: warning: variable ‘alldecoffset’ set but not used [-Wunused-but-set-variable=] 534 | uint64_t alldecoffset = highdecoffset; | ^~~~~~~~~~~~ ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 1]’: ./libmaus2/huffman/CanonicalEncoder.hpp:219:116: required from here 219 | return ::libmaus2::huffman::EncodeTable<1>::unique_ptr_type(new ::libmaus2::huffman::EncodeTable<1>(Ptree.get())); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testrlhist test/testrlhist-testrlhist.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testrlhist test/testrlhist-testrlhist.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testnumcpus-testnumcpus.o `test -f 'test/testnumcpus.cpp' || echo './'`test/testnumcpus.cpp /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testnumcpus test/testnumcpus-testnumcpus.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testnumcpus test/testnumcpus-testnumcpus.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testdiag-testdiag.o `test -f 'test/testdiag.cpp' || echo './'`test/testdiag.cpp /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testdiag test/testdiag-testdiag.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testdiag test/testdiag-testdiag.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testlowmembamheaderparser-testlowmembamheaderparser.o `test -f 'test/testlowmembamheaderparser.cpp' || echo './'`test/testlowmembamheaderparser.cpp In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/bambam/BamAuxFilterVector.hpp:22, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:27, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from test/testlowmembamheaderparser.cpp:20: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/bambam/CigarStringParser.hpp:25, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ In file included from ./libmaus2/bambam/BamAlignmentDecoder.hpp:24: ./libmaus2/bambam/BamHeaderLowMem.hpp: In member function ‘void libmaus2::bambam::BamHeaderLowMem::setupFromText()’: ./libmaus2/bambam/BamHeaderLowMem.hpp:366:58: warning: variable ‘ln’ set but not used [-Wunused-but-set-variable=] 366 | uint64_t ln = 0; | ^~ /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testlowmembamheaderparser test/testlowmembamheaderparser-testlowmembamheaderparser.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testlowmembamheaderparser test/testlowmembamheaderparser-testlowmembamheaderparser.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testgeneflatfile-testgeneflatfile.o `test -f 'test/testgeneflatfile.cpp' || echo './'`test/testgeneflatfile.cpp /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testgeneflatfile test/testgeneflatfile-testgeneflatfile.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testgeneflatfile test/testgeneflatfile-testgeneflatfile.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testurlinputstream-testurlinputstream.o `test -f 'test/testurlinputstream.cpp' || echo './'`test/testurlinputstream.cpp /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testurlinputstream test/testurlinputstream-testurlinputstream.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testurlinputstream test/testurlinputstream-testurlinputstream.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testsimpletrie-testsimpletrie.o `test -f 'test/testsimpletrie.cpp' || echo './'`test/testsimpletrie.cpp /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testsimpletrie test/testsimpletrie-testsimpletrie.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testsimpletrie test/testsimpletrie-testsimpletrie.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testlru-testlru.o `test -f 'test/testlru.cpp' || echo './'`test/testlru.cpp /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testlru test/testlru-testlru.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testlru test/testlru-testlru.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testbytecnt-testbytecnt.o `test -f 'test/testbytecnt.cpp' || echo './'`test/testbytecnt.cpp /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testbytecnt test/testbytecnt-testbytecnt.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testbytecnt test/testbytecnt-testbytecnt.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/teststronglyconnectedcomponents-teststronglyconnectedcomponents.o `test -f 'test/teststronglyconnectedcomponents.cpp' || echo './'`test/teststronglyconnectedcomponents.cpp /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o teststronglyconnectedcomponents test/teststronglyconnectedcomponents-teststronglyconnectedcomponents.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/teststronglyconnectedcomponents test/teststronglyconnectedcomponents-teststronglyconnectedcomponents.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testtopologicalsorting-testtopologicalsorting.o `test -f 'test/testtopologicalsorting.cpp' || echo './'`test/testtopologicalsorting.cpp /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testtopologicalsorting test/testtopologicalsorting-testtopologicalsorting.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testtopologicalsorting test/testtopologicalsorting-testtopologicalsorting.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testlinebuffer-testlinebuffer.o `test -f 'test/testlinebuffer.cpp' || echo './'`test/testlinebuffer.cpp /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testlinebuffer test/testlinebuffer-testlinebuffer.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testlinebuffer test/testlinebuffer-testlinebuffer.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testsamdecoder-testsamdecoder.o `test -f 'test/testsamdecoder.cpp' || echo './'`test/testsamdecoder.cpp In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/bambam/BamAuxFilterVector.hpp:22, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:27, from ./libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from ./libmaus2/bambam/BamWriter.hpp:22, from ./libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from test/testsamdecoder.cpp:21: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/bambam/CigarStringParser.hpp:25, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ In file included from ./libmaus2/bambam/SamInfo.hpp:26, from ./libmaus2/bambam/SamDecoder.hpp:23, from test/testsamdecoder.cpp:22: ./libmaus2/bambam/BamHeaderLowMem.hpp: In member function ‘void libmaus2::bambam::BamHeaderLowMem::setupFromText()’: ./libmaus2/bambam/BamHeaderLowMem.hpp:366:58: warning: variable ‘ln’ set but not used [-Wunused-but-set-variable=] 366 | uint64_t ln = 0; | ^~ /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testsamdecoder test/testsamdecoder-testsamdecoder.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testsamdecoder test/testsamdecoder-testsamdecoder.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testdecimalnumberparser-testdecimalnumberparser.o `test -f 'test/testdecimalnumberparser.cpp' || echo './'`test/testdecimalnumberparser.cpp /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testdecimalnumberparser test/testdecimalnumberparser-testdecimalnumberparser.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testdecimalnumberparser test/testdecimalnumberparser-testdecimalnumberparser.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testunsignedinteger-testunsignedinteger.o `test -f 'test/testunsignedinteger.cpp' || echo './'`test/testunsignedinteger.cpp /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testunsignedinteger test/testunsignedinteger-testunsignedinteger.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testunsignedinteger test/testunsignedinteger-testunsignedinteger.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testmd5-testmd5.o `test -f 'test/testmd5.cpp' || echo './'`test/testmd5.cpp /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testmd5 test/testmd5-testmd5.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testmd5 test/testmd5-testmd5.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testsha-testsha.o `test -f 'test/testsha.cpp' || echo './'`test/testsha.cpp /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testsha test/testsha-testsha.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testsha test/testsha-testsha.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testparallelbamvalidation-testparallelbamvalidation.o `test -f 'test/testparallelbamvalidation.cpp' || echo './'`test/testparallelbamvalidation.cpp In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/bambam/BamHeaderLowMem.hpp:25, from ./libmaus2/bambam/parallel/ParseInfo.hpp:22, from test/testparallelbamvalidation.cpp:40: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ ./libmaus2/bambam/BamHeaderLowMem.hpp: In member function ‘void libmaus2::bambam::BamHeaderLowMem::setupFromText()’: ./libmaus2/bambam/BamHeaderLowMem.hpp:366:58: warning: variable ‘ln’ set but not used [-Wunused-but-set-variable=] 366 | uint64_t ln = 0; | ^~ In file included from ./libmaus2/bambam/CigarStringParser.hpp:25, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/parallel/PushBackSpace.hpp:22, from ./libmaus2/bambam/parallel/ParseInfo.hpp:24: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testparallelbamvalidation test/testparallelbamvalidation-testparallelbamvalidation.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testparallelbamvalidation test/testparallelbamvalidation-testparallelbamvalidation.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testparallelbamrewrite-testparallelbamrewrite.o `test -f 'test/testparallelbamrewrite.cpp' || echo './'`test/testparallelbamrewrite.cpp In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/bambam/BamAuxFilterVector.hpp:22, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:27, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/parallel/PushBackSpace.hpp:22, from ./libmaus2/bambam/parallel/AlignmentBuffer.hpp:22, from ./libmaus2/bambam/parallel/FragmentAlignmentBufferRewriteUpdateInterval.hpp:22, from test/testparallelbamrewrite.cpp:20: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/bambam/CigarStringParser.hpp:25, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ In file included from ./libmaus2/bambam/parallel/ParseInfo.hpp:22, from test/testparallelbamrewrite.cpp:54: ./libmaus2/bambam/BamHeaderLowMem.hpp: In member function ‘void libmaus2::bambam::BamHeaderLowMem::setupFromText()’: ./libmaus2/bambam/BamHeaderLowMem.hpp:366:58: warning: variable ‘ln’ set but not used [-Wunused-but-set-variable=] 366 | uint64_t ln = 0; | ^~ /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testparallelbamrewrite test/testparallelbamrewrite-testparallelbamrewrite.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testparallelbamrewrite test/testparallelbamrewrite-testparallelbamrewrite.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testbammateerase-testbammateerase.o `test -f 'test/testbammateerase.cpp' || echo './'`test/testbammateerase.cpp In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/bambam/BamAuxFilterVector.hpp:22, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:27, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from test/testbammateerase.cpp:20: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/bambam/CigarStringParser.hpp:25, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ In file included from ./libmaus2/bambam/BamAlignmentDecoder.hpp:24: ./libmaus2/bambam/BamHeaderLowMem.hpp: In member function ‘void libmaus2::bambam::BamHeaderLowMem::setupFromText()’: ./libmaus2/bambam/BamHeaderLowMem.hpp:366:58: warning: variable ‘ln’ set but not used [-Wunused-but-set-variable=] 366 | uint64_t ln = 0; | ^~ /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testbammateerase test/testbammateerase-testbammateerase.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testbammateerase test/testbammateerase-testbammateerase.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testparallelbamblocksort-testparallelbamblocksort.o `test -f 'test/testparallelbamblocksort.cpp' || echo './'`test/testparallelbamblocksort.cpp In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/bambam/BamAuxFilterVector.hpp:22, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:27, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamNumericalIndexGenerator.hpp:24, from ./libmaus2/bambam/parallel/BlockMergeControl.hpp:24, from test/testparallelbamblocksort.cpp:19: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/bambam/CigarStringParser.hpp:25, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ In file included from ./libmaus2/bambam/parallel/GenericInputSingleDataBamParseInfo.hpp:23, from ./libmaus2/bambam/parallel/GenericInputSingleData.hpp:30, from ./libmaus2/bambam/parallel/GenericInputControlReadWorkPackage.hpp:22, from ./libmaus2/bambam/parallel/GenericInputControlReadWorkPackageReturnInterface.hpp:22, from ./libmaus2/bambam/parallel/GenericInputControlReadWorkPackageDispatcher.hpp:22, from ./libmaus2/bambam/parallel/BlockMergeControl.hpp:36: ./libmaus2/bambam/BamHeaderLowMem.hpp: In member function ‘void libmaus2::bambam::BamHeaderLowMem::setupFromText()’: ./libmaus2/bambam/BamHeaderLowMem.hpp:366:58: warning: variable ‘ln’ set but not used [-Wunused-but-set-variable=] 366 | uint64_t ln = 0; | ^~ In file included from ./libmaus2/bambam/ReadEndsBlockDecoderBase.hpp:31, from ./libmaus2/bambam/ReadEndsContainer.hpp:34, from ./libmaus2/bambam/parallel/ReadEndsContainerFreeListInterface.hpp:22, from ./libmaus2/bambam/parallel/FragmentAlignmentBufferRewriteReadEndsWorkPackageDispatcher.hpp:28, from ./libmaus2/bambam/parallel/BlockSortControl.hpp:37, from test/testparallelbamblocksort.cpp:20: ./libmaus2/index/ExternalMemoryIndexDecoder.hpp: In instantiation of ‘void libmaus2::index::ExternalMemoryIndexDecoder<_data_type, _base_level_log, _inner_level_log, _comparator>::setup(uint64_t) [with _data_type = libmaus2::bambam::ReadEndsBase; unsigned int _base_level_log = 9; unsigned int _inner_level_log = 2; _comparator = std::less; uint64_t = long unsigned int]’: ./libmaus2/index/ExternalMemoryIndexDecoder.hpp:189:5: required from ‘libmaus2::index::ExternalMemoryIndexDecoder<_data_type, _base_level_log, _inner_level_log, _comparator>::ExternalMemoryIndexDecoder(std::istream&, uint64_t) [with _data_type = libmaus2::bambam::ReadEndsBase; unsigned int _base_level_log = 9; unsigned int _inner_level_log = 2; _comparator = std::less; std::istream = std::basic_istream; uint64_t = long unsigned int]’ 189 | setup(rcache_thres); | ^~~~~ ./libmaus2/bambam/ReadEndsBlockIndexSet.hpp:107:34: required from here 107 | new index_decoder_type(str) | ^ ./libmaus2/index/ExternalMemoryIndexDecoder.hpp:99:46: warning: variable ‘numcache’ set but not used [-Wunused-but-set-variable=] 99 | unsigned int numcache = 0; | ^~~~~~~~ ./libmaus2/index/ExternalMemoryIndexDecoder.hpp: In instantiation of ‘void libmaus2::index::ExternalMemoryIndexDecoder<_data_type, _base_level_log, _inner_level_log, _comparator>::setup(uint64_t) [with _data_type = libmaus2::bambam::ReadEndsBase; unsigned int _base_level_log = 9; unsigned int _inner_level_log = 2; _comparator = libmaus2::bambam::ReadEndsBaseShortHashAttributeComparator; uint64_t = long unsigned int]’: ./libmaus2/index/ExternalMemoryIndexDecoder.hpp:189:5: required from ‘libmaus2::index::ExternalMemoryIndexDecoder<_data_type, _base_level_log, _inner_level_log, _comparator>::ExternalMemoryIndexDecoder(std::istream&, uint64_t) [with _data_type = libmaus2::bambam::ReadEndsBase; unsigned int _base_level_log = 9; unsigned int _inner_level_log = 2; _comparator = libmaus2::bambam::ReadEndsBaseShortHashAttributeComparator; std::istream = std::basic_istream; uint64_t = long unsigned int]’ 189 | setup(rcache_thres); | ^~~~~ ./libmaus2/bambam/ReadEndsBlockDecoderBaseCollection.hpp:486:45: required from ‘static std::vector > > libmaus2::bambam::ReadEndsBlockDecoderBaseCollection<_proxy>::getShortMergeIntervals(const std::vector&, uint64_t, bool) [with bool _proxy = true; uint64_t = long unsigned int]’ 486 | short_index_decoder_pointer_type tptr(new short_index_decoder_type(*Pindexstreams[i],cacheperdec)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/bambam/parallel/BlockSortControl.hpp:1387:89: required from ‘void libmaus2::bambam::parallel::BlockSortControl<_order_type, _create_dup_mark_info>::enqueMergeFragReadEndsLists(libmaus2::parallel::StdSemaphore::shared_ptr_type) [with _order_type = libmaus2::bambam::parallel::FragmentAlignmentBufferQueryNameComparator; bool _create_dup_mark_info = false; libmaus2::parallel::StdSemaphore::shared_ptr_type = std::shared_ptr]’ 1387 | libmaus2::bambam::ReadEndsBlockDecoderBaseCollection::getShortMergeIntervals(*MI,STP.getNumThreads(),false /* check */); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/bambam/parallel/BlockSortControl.hpp:1891:6: required from ‘void libmaus2::bambam::parallel::BlockSortControl<_order_type, _create_dup_mark_info>::mergeReadEndsLists(std::ostream&, std::string) [with _order_type = libmaus2::bambam::parallel::FragmentAlignmentBufferQueryNameComparator; bool _create_dup_mark_info = false; std::ostream = std::basic_ostream; std::string = std::__cxx11::basic_string]’ 1891 | enqueMergeFragReadEndsLists(psem); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ test/testparallelbamblocksort.cpp:129:25: required from ‘int parallelbamblocksort(const libmaus2::util::ArgInfo&, bool, bool, const std::string&, bool) [with order_type = libmaus2::bambam::parallel::FragmentAlignmentBufferQueryNameComparator; heap_element_type = libmaus2::bambam::parallel::GenericInputControlMergeHeapEntryQueryName; bool create_dup_mark_info = false; std::string = std::__cxx11::basic_string]’ 129 | VC->mergeReadEndsLists(std::cerr /* metrics stream */,"testparallelbamblocksort"); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ test/testparallelbamblocksort.cpp:257:38: required from here 254 | r = parallelbamblocksort< | ~~~~~~~~~~~~~~~~~~~~~ 255 | libmaus2::bambam::parallel::FragmentAlignmentBufferQueryNameComparator, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 | libmaus2::bambam::parallel::GenericInputControlMergeHeapEntryQueryName, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 | false /* create dup mark info */>(arginfo,false /* fix mates */,false /* dup mark support */, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 | "queryname", | ~~~~~~~~~~~~ 259 | false /* bam index */ | ~~~~~~~~~~~~~~~~~~~~~ 260 | ); | ~ ./libmaus2/index/ExternalMemoryIndexDecoder.hpp:99:46: warning: variable ‘numcache’ set but not used [-Wunused-but-set-variable=] 99 | unsigned int numcache = 0; | ^~~~~~~~ ./libmaus2/index/ExternalMemoryIndexDecoder.hpp: In instantiation of ‘void libmaus2::index::ExternalMemoryIndexDecoder<_data_type, _base_level_log, _inner_level_log, _comparator>::setup(uint64_t) [with _data_type = libmaus2::bambam::ReadEndsBase; unsigned int _base_level_log = 9; unsigned int _inner_level_log = 2; _comparator = libmaus2::bambam::ReadEndsBaseLongHashAttributeComparator; uint64_t = long unsigned int]’: ./libmaus2/index/ExternalMemoryIndexDecoder.hpp:189:5: required from ‘libmaus2::index::ExternalMemoryIndexDecoder<_data_type, _base_level_log, _inner_level_log, _comparator>::ExternalMemoryIndexDecoder(std::istream&, uint64_t) [with _data_type = libmaus2::bambam::ReadEndsBase; unsigned int _base_level_log = 9; unsigned int _inner_level_log = 2; _comparator = libmaus2::bambam::ReadEndsBaseLongHashAttributeComparator; std::istream = std::basic_istream; uint64_t = long unsigned int]’ 189 | setup(rcache_thres); | ^~~~~ ./libmaus2/bambam/ReadEndsBlockDecoderBaseCollection.hpp:926:44: required from ‘static std::vector > > libmaus2::bambam::ReadEndsBlockDecoderBaseCollection<_proxy>::getLongMergeIntervals(const std::vector&, uint64_t, bool) [with bool _proxy = true; uint64_t = long unsigned int]’ 926 | long_index_decoder_pointer_type tptr(new long_index_decoder_type(*Pindexstreams[i],cacheperdec)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/bambam/parallel/BlockSortControl.hpp:1452:88: required from ‘void libmaus2::bambam::parallel::BlockSortControl<_order_type, _create_dup_mark_info>::enqueMergePairReadEndsLists(libmaus2::parallel::StdSemaphore::shared_ptr_type) [with _order_type = libmaus2::bambam::parallel::FragmentAlignmentBufferQueryNameComparator; bool _create_dup_mark_info = false; libmaus2::parallel::StdSemaphore::shared_ptr_type = std::shared_ptr]’ 1452 | libmaus2::bambam::ReadEndsBlockDecoderBaseCollection::getLongMergeIntervals(*MI,STP.getNumThreads(),false /* check */); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/bambam/parallel/BlockSortControl.hpp:1903:6: required from ‘void libmaus2::bambam::parallel::BlockSortControl<_order_type, _create_dup_mark_info>::mergeReadEndsLists(std::ostream&, std::string) [with _order_type = libmaus2::bambam::parallel::FragmentAlignmentBufferQueryNameComparator; bool _create_dup_mark_info = false; std::ostream = std::basic_ostream; std::string = std::__cxx11::basic_string]’ 1903 | enqueMergePairReadEndsLists(psem); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ test/testparallelbamblocksort.cpp:129:25: required from ‘int parallelbamblocksort(const libmaus2::util::ArgInfo&, bool, bool, const std::string&, bool) [with order_type = libmaus2::bambam::parallel::FragmentAlignmentBufferQueryNameComparator; heap_element_type = libmaus2::bambam::parallel::GenericInputControlMergeHeapEntryQueryName; bool create_dup_mark_info = false; std::string = std::__cxx11::basic_string]’ 129 | VC->mergeReadEndsLists(std::cerr /* metrics stream */,"testparallelbamblocksort"); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ test/testparallelbamblocksort.cpp:257:38: required from here 254 | r = parallelbamblocksort< | ~~~~~~~~~~~~~~~~~~~~~ 255 | libmaus2::bambam::parallel::FragmentAlignmentBufferQueryNameComparator, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 | libmaus2::bambam::parallel::GenericInputControlMergeHeapEntryQueryName, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 | false /* create dup mark info */>(arginfo,false /* fix mates */,false /* dup mark support */, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 | "queryname", | ~~~~~~~~~~~~ 259 | false /* bam index */ | ~~~~~~~~~~~~~~~~~~~~~ 260 | ); | ~ ./libmaus2/index/ExternalMemoryIndexDecoder.hpp:99:46: warning: variable ‘numcache’ set but not used [-Wunused-but-set-variable=] 99 | unsigned int numcache = 0; | ^~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -L/lib -Wl,-z,relro -Wl,-z,now -o testparallelbamblocksort test/testparallelbamblocksort-testparallelbamblocksort.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lgmp -lz libtool: link: powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testparallelbamblocksort test/testparallelbamblocksort-testparallelbamblocksort.o -L/lib ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lgmp -lz -fopenmp -pthread powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testmapperm-testmapperm.o `test -f 'test/testmapperm.cpp' || echo './'`test/testmapperm.cpp In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/bambam/BamAuxFilterVector.hpp:22, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:27, from ./libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from ./libmaus2/bambam/BamWriter.hpp:22, from test/testmapperm.cpp:21: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/bambam/CigarStringParser.hpp:25, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testmapperm test/testmapperm-testmapperm.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testmapperm test/testmapperm-testmapperm.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testexternalmemoryindex-testexternalmemoryindex.o `test -f 'test/testexternalmemoryindex.cpp' || echo './'`test/testexternalmemoryindex.cpp In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/bambam/BamAuxFilterVector.hpp:22, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:27, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/ReadEndsBase.hpp:22, from test/testexternalmemoryindex.cpp:22: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/bambam/CigarStringParser.hpp:25, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ In file included from test/testexternalmemoryindex.cpp:20: ./libmaus2/index/ExternalMemoryIndexDecoder.hpp: In instantiation of ‘void libmaus2::index::ExternalMemoryIndexDecoder<_data_type, _base_level_log, _inner_level_log, _comparator>::setup(uint64_t) [with _data_type = SerialisableUint64; unsigned int _base_level_log = 10; unsigned int _inner_level_log = 2; _comparator = std::less; uint64_t = long unsigned int]’: ./libmaus2/index/ExternalMemoryIndexDecoder.hpp:189:5: required from ‘libmaus2::index::ExternalMemoryIndexDecoder<_data_type, _base_level_log, _inner_level_log, _comparator>::ExternalMemoryIndexDecoder(std::istream&, uint64_t) [with _data_type = SerialisableUint64; unsigned int _base_level_log = 10; unsigned int _inner_level_log = 2; _comparator = std::less; std::istream = std::basic_istream; uint64_t = long unsigned int]’ 189 | setup(rcache_thres); | ^~~~~ test/testexternalmemoryindex.cpp:106:131: required from here 106 | libmaus2::index::ExternalMemoryIndexDecoder indexdec(indexiostr,(1ull << 20)); | ^ ./libmaus2/index/ExternalMemoryIndexDecoder.hpp:99:46: warning: variable ‘numcache’ set but not used [-Wunused-but-set-variable=] 99 | unsigned int numcache = 0; | ^~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testexternalmemoryindex test/testexternalmemoryindex-testexternalmemoryindex.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testexternalmemoryindex test/testexternalmemoryindex-testexternalmemoryindex.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testfastqtobam-testfastqtobam.o `test -f 'test/testfastqtobam.cpp' || echo './'`test/testfastqtobam.cpp In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/bambam/BamAuxFilterVector.hpp:22, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:27, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/parallel/FastqParsePackageDispatcher.hpp:28, from ./libmaus2/bambam/parallel/FastqToBamControl.hpp:22, from test/testfastqtobam.cpp:22: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/bambam/CigarStringParser.hpp:25, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testfastqtobam test/testfastqtobam-testfastqtobam.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testfastqtobam test/testfastqtobam-testfastqtobam.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testsamrecoding-testsamrecoding.o `test -f 'test/testsamrecoding.cpp' || echo './'`test/testsamrecoding.cpp In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/bambam/BamAuxFilterVector.hpp:22, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:27, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from ./libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from ./libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from test/testsamrecoding.cpp:20: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/bambam/CigarStringParser.hpp:25, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ In file included from ./libmaus2/bambam/BamAlignmentDecoder.hpp:24: ./libmaus2/bambam/BamHeaderLowMem.hpp: In member function ‘void libmaus2::bambam::BamHeaderLowMem::setupFromText()’: ./libmaus2/bambam/BamHeaderLowMem.hpp:366:58: warning: variable ‘ln’ set but not used [-Wunused-but-set-variable=] 366 | uint64_t ln = 0; | ^~ /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testsamrecoding test/testsamrecoding-testsamrecoding.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testsamrecoding test/testsamrecoding-testsamrecoding.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testdazzlerdb-testdazzlerdb.o `test -f 'test/testdazzlerdb.cpp' || echo './'`test/testdazzlerdb.cpp In file included from ./libmaus2/lcs/Aligner.hpp:21, from ./libmaus2/dazzler/align/Overlap.hpp:22, from ./libmaus2/dazzler/align/OverlapMeta.hpp:21, from ./libmaus2/dazzler/align/Tandem.hpp:21, from ./libmaus2/dazzler/align/TandemVector.hpp:21, from ./libmaus2/dazzler/align/TandemVectorPartContainer.hpp:22, from test/testdazzlerdb.cpp:18: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ In file included from ./libmaus2/dazzler/align/OverlapIndexer.hpp:30, from ./libmaus2/dazzler/align/OverlapMetaIteratorGet.hpp:21, from test/testdazzlerdb.cpp:19: ./libmaus2/index/ExternalMemoryIndexDecoder.hpp: In instantiation of ‘void libmaus2::index::ExternalMemoryIndexDecoder<_data_type, _base_level_log, _inner_level_log, _comparator>::setup(uint64_t) [with _data_type = libmaus2::dazzler::align::OverlapMeta; unsigned int _base_level_log = 8; unsigned int _inner_level_log = 3; _comparator = std::less; uint64_t = long unsigned int]’: ./libmaus2/index/ExternalMemoryIndexDecoder.hpp:183:5: required from ‘libmaus2::index::ExternalMemoryIndexDecoder<_data_type, _base_level_log, _inner_level_log, _comparator>::ExternalMemoryIndexDecoder(const std::string&, uint64_t) [with _data_type = libmaus2::dazzler::align::OverlapMeta; unsigned int _base_level_log = 8; unsigned int _inner_level_log = 3; _comparator = std::less; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’ 183 | setup(rcache_thres); | ^~~~~ ./libmaus2/dazzler/align/OverlapIndexer.hpp:109:108: required from here 109 | libmaus2::index::ExternalMemoryIndexDecoder EMID(indexname); | ^ ./libmaus2/index/ExternalMemoryIndexDecoder.hpp:99:46: warning: variable ‘numcache’ set but not used [-Wunused-but-set-variable=] 99 | unsigned int numcache = 0; | ^~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testdazzlerdb test/testdazzlerdb-testdazzlerdb.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testdazzlerdb test/testdazzlerdb-testdazzlerdb.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testfastashred-testfastashred.o `test -f 'test/testfastashred.cpp' || echo './'`test/testfastashred.cpp In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/util/IntervalTree.hpp:25, from ./libmaus2/fastx/FastInterval.hpp:25, from ./libmaus2/fastx/FastAReader.hpp:31, from ./libmaus2/fastx/StreamFastAReader.hpp:23, from test/testfastashred.cpp:20: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testfastashred test/testfastashred-testfastashred.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testfastashred test/testfastashred-testfastashred.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testalignerspeed-testalignerspeed.o `test -f 'test/testalignerspeed.cpp' || echo './'`test/testalignerspeed.cpp In file included from ./libmaus2/lcs/NNPTraceContainer.hpp:23, from ./libmaus2/lcs/NNPCor.hpp:22, from test/testalignerspeed.cpp:18: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/util/IntervalTree.hpp:25, from ./libmaus2/fastx/FastInterval.hpp:25, from ./libmaus2/fastx/FastAReader.hpp:31, from ./libmaus2/fastx/StreamFastAReader.hpp:23, from ./libmaus2/random/DNABaseNoiseSpiker.hpp:22, from test/testalignerspeed.cpp:39: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testalignerspeed test/testalignerspeed-testalignerspeed.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testalignerspeed test/testalignerspeed-testalignerspeed.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testfastasingleline-testfastasingleline.o `test -f 'test/testfastasingleline.cpp' || echo './'`test/testfastasingleline.cpp In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/util/IntervalTree.hpp:25, from ./libmaus2/fastx/FastInterval.hpp:25, from ./libmaus2/fastx/FastAReader.hpp:31, from ./libmaus2/fastx/StreamFastAReader.hpp:23, from test/testfastasingleline.cpp:18: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testfastasingleline test/testfastasingleline-testfastasingleline.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testfastasingleline test/testfastasingleline-testfastasingleline.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testdazzleralignmentrewrite-testdazzleralignmentrewrite.o `test -f 'test/testdazzleralignmentrewrite.cpp' || echo './'`test/testdazzleralignmentrewrite.cpp In file included from ./libmaus2/lcs/Aligner.hpp:21, from ./libmaus2/dazzler/align/Overlap.hpp:22, from ./libmaus2/dazzler/align/AlignmentFile.hpp:21, from test/testdazzleralignmentrewrite.cpp:18: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testdazzleralignmentrewrite test/testdazzleralignmentrewrite-testdazzleralignmentrewrite.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testdazzleralignmentrewrite test/testdazzleralignmentrewrite-testdazzleralignmentrewrite.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testxz-testxz.o `test -f 'test/testxz.cpp' || echo './'`test/testxz.cpp /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testxz test/testxz-testxz.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testxz test/testxz-testxz.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testdazzlerindex-testdazzlerindex.o `test -f 'test/testdazzlerindex.cpp' || echo './'`test/testdazzlerindex.cpp In file included from ./libmaus2/lcs/Aligner.hpp:21, from ./libmaus2/dazzler/align/Overlap.hpp:22, from ./libmaus2/dazzler/align/AlignmentFile.hpp:21, from ./libmaus2/dazzler/align/DalignerIndexDecoder.hpp:21, from ./libmaus2/dazzler/align/AlignmentFileDecoder.hpp:21, from ./libmaus2/dazzler/align/OverlapIndexer.hpp:21, from test/testdazzlerindex.cpp:19: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ In file included from ./libmaus2/dazzler/align/OverlapIndexer.hpp:30: ./libmaus2/index/ExternalMemoryIndexDecoder.hpp: In instantiation of ‘void libmaus2::index::ExternalMemoryIndexDecoder<_data_type, _base_level_log, _inner_level_log, _comparator>::setup(uint64_t) [with _data_type = libmaus2::dazzler::align::OverlapMeta; unsigned int _base_level_log = 8; unsigned int _inner_level_log = 3; _comparator = std::less; uint64_t = long unsigned int]’: ./libmaus2/index/ExternalMemoryIndexDecoder.hpp:183:5: required from ‘libmaus2::index::ExternalMemoryIndexDecoder<_data_type, _base_level_log, _inner_level_log, _comparator>::ExternalMemoryIndexDecoder(const std::string&, uint64_t) [with _data_type = libmaus2::dazzler::align::OverlapMeta; unsigned int _base_level_log = 8; unsigned int _inner_level_log = 3; _comparator = std::less; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’ 183 | setup(rcache_thres); | ^~~~~ ./libmaus2/dazzler/align/OverlapIndexer.hpp:109:108: required from here 109 | libmaus2::index::ExternalMemoryIndexDecoder EMID(indexname); | ^ ./libmaus2/index/ExternalMemoryIndexDecoder.hpp:99:46: warning: variable ‘numcache’ set but not used [-Wunused-but-set-variable=] 99 | unsigned int numcache = 0; | ^~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testdazzlerindex test/testdazzlerindex-testdazzlerindex.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testdazzlerindex test/testdazzlerindex-testdazzlerindex.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testargparser-testargparser.o `test -f 'test/testargparser.cpp' || echo './'`test/testargparser.cpp /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testargparser test/testargparser-testargparser.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testargparser test/testargparser-testargparser.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testdnarank-testdnarank.o `test -f 'test/testdnarank.cpp' || echo './'`test/testdnarank.cpp In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/rank/DNARank.hpp:35, from ./libmaus2/rank/DNARankSuffixTreeNodeEnumerator.hpp:22, from test/testdnarank.cpp:20: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/huffman/huffman.hpp:183, from ./libmaus2/huffman/CanonicalEncoder.hpp:26, from ./libmaus2/huffman/RLDecoder.hpp:27, from ./libmaus2/rank/DNARank.hpp:24: ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 2]’: ./libmaus2/huffman/HuffmanSorting.hpp:860:55: required from here 860 | huffman::EncodeTable enctable ( root ); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:188: ./libmaus2/huffman/HuffmanSorting.hpp: In instantiation of ‘static void libmaus2::huffman::HuffmanSorting::uncompressHuffmanCoded(uint64_t*, uint64_t, uint64_t, uint64_t, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::HuffmanTreeNode*, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::EncodeTable&) [with unsigned int lookupwords = 2; uint64_t = long unsigned int]’: ./libmaus2/huffman/HuffmanSorting.hpp:1091:27: required from here 1091 | uncompressHuffmanCoded(acode.get(), 0 /* bit offset */, lowhalf /* syms */, firsthighsym, enctable,dectable,root.get(),dectable0,dectable1,enctable0,enctable1); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/huffman/HuffmanSorting.hpp:534:42: warning: variable ‘alldecoffset’ set but not used [-Wunused-but-set-variable=] 534 | uint64_t alldecoffset = highdecoffset; | ^~~~~~~~~~~~ ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 1]’: ./libmaus2/huffman/CanonicalEncoder.hpp:219:116: required from here 219 | return ::libmaus2::huffman::EncodeTable<1>::unique_ptr_type(new ::libmaus2::huffman::EncodeTable<1>(Ptree.get())); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testdnarank test/testdnarank-testdnarank.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testdnarank test/testdnarank-testdnarank.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testlowbits-testlowbits.o `test -f 'test/testlowbits.cpp' || echo './'`test/testlowbits.cpp /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testlowbits test/testlowbits-testlowbits.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testlowbits test/testlowbits-testlowbits.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testfastaexplode-testfastaexplode.o `test -f 'test/testfastaexplode.cpp' || echo './'`test/testfastaexplode.cpp In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/util/IntervalTree.hpp:25, from ./libmaus2/fastx/FastInterval.hpp:25, from ./libmaus2/fastx/FastAReader.hpp:31, from ./libmaus2/fastx/StreamFastAReader.hpp:23, from test/testfastaexplode.cpp:21: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testfastaexplode test/testfastaexplode-testfastaexplode.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testfastaexplode test/testfastaexplode-testfastaexplode.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testfaextract-testfaextract.o `test -f 'test/testfaextract.cpp' || echo './'`test/testfaextract.cpp In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/bambam/BamAuxFilterVector.hpp:22, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:27, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from ./libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from test/testfaextract.cpp:22: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/bambam/CigarStringParser.hpp:25, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ In file included from ./libmaus2/bambam/BamAlignmentDecoder.hpp:24: ./libmaus2/bambam/BamHeaderLowMem.hpp: In member function ‘void libmaus2::bambam::BamHeaderLowMem::setupFromText()’: ./libmaus2/bambam/BamHeaderLowMem.hpp:366:58: warning: variable ‘ln’ set but not used [-Wunused-but-set-variable=] 366 | uint64_t ln = 0; | ^~ /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testfaextract test/testfaextract-testfaextract.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testfaextract test/testfaextract-testfaextract.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testmurmur3-testmurmur3.o `test -f 'test/testmurmur3.cpp' || echo './'`test/testmurmur3.cpp /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testmurmur3 test/testmurmur3-testmurmur3.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testmurmur3 test/testmurmur3-testmurmur3.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testpairalign-testpairalign.o `test -f 'test/testpairalign.cpp' || echo './'`test/testpairalign.cpp In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/util/IntervalTree.hpp:25, from ./libmaus2/fastx/FastInterval.hpp:25, from ./libmaus2/fastx/FastAReader.hpp:31, from test/testpairalign.cpp:18: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/lcs/Aligner.hpp:21, from ./libmaus2/lcs/NP.hpp:21, from test/testpairalign.cpp:20: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ In file included from ./libmaus2/dazzler/align/OverlapIndexer.hpp:30, from ./libmaus2/dazzler/align/AlignmentWriter.hpp:21, from test/testpairalign.cpp:24: ./libmaus2/index/ExternalMemoryIndexDecoder.hpp: In instantiation of ‘void libmaus2::index::ExternalMemoryIndexDecoder<_data_type, _base_level_log, _inner_level_log, _comparator>::setup(uint64_t) [with _data_type = libmaus2::dazzler::align::OverlapMeta; unsigned int _base_level_log = 8; unsigned int _inner_level_log = 3; _comparator = std::less; uint64_t = long unsigned int]’: ./libmaus2/index/ExternalMemoryIndexDecoder.hpp:183:5: required from ‘libmaus2::index::ExternalMemoryIndexDecoder<_data_type, _base_level_log, _inner_level_log, _comparator>::ExternalMemoryIndexDecoder(const std::string&, uint64_t) [with _data_type = libmaus2::dazzler::align::OverlapMeta; unsigned int _base_level_log = 8; unsigned int _inner_level_log = 3; _comparator = std::less; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’ 183 | setup(rcache_thres); | ^~~~~ ./libmaus2/dazzler/align/OverlapIndexer.hpp:109:108: required from here 109 | libmaus2::index::ExternalMemoryIndexDecoder EMID(indexname); | ^ ./libmaus2/index/ExternalMemoryIndexDecoder.hpp:99:46: warning: variable ‘numcache’ set but not used [-Wunused-but-set-variable=] 99 | unsigned int numcache = 0; | ^~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testpairalign test/testpairalign-testpairalign.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testpairalign test/testpairalign-testpairalign.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testsplaytree-testsplaytree.o `test -f 'test/testsplaytree.cpp' || echo './'`test/testsplaytree.cpp /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testsplaytree test/testsplaytree-testsplaytree.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testsplaytree test/testsplaytree-testsplaytree.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testbwtconstruction-testbwtconstruction.o `test -f 'test/testbwtconstruction.cpp' || echo './'`test/testbwtconstruction.cpp In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/util/IntervalTree.hpp:25, from ./libmaus2/gamma/GammaRLDecoder.hpp:28, from ./libmaus2/gamma/GammaRLEncoder.hpp:29, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:24, from ./libmaus2/suffixsort/bwtb3m/BwtMergeComputeSampledSA.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from test/testbwtconstruction.cpp:19: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/suffixsort/bwtb3m/GapArrayWrapper.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeIsaParallelBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:24: ./libmaus2/util/AtomicArray.hpp: At global scope: ./libmaus2/util/AtomicArray.hpp:45:43: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 45 | AtomicArray(AtomicArray const & O) = delete; | ^~~~~~~~~~~~~~~~~ ./libmaus2/util/AtomicArray.hpp:45:43: note: remove the ‘< >’ In file included from ./libmaus2/suffixsort/bwtb3m/BwtMergeIsaParallelBase.hpp:24: ./libmaus2/suffixsort/GapArrayByte.hpp: In member function ‘void libmaus2::suffixsort::GapArrayByte::flush()’: ./libmaus2/suffixsort/GapArrayByte.hpp:134:42: warning: variable ‘overflowcnt’ set but not used [-Wunused-but-set-variable=] 134 | uint64_t overflowcnt = 0; | ^~~~~~~~~~~ In file included from ./libmaus2/suffixsort/BwtMergeTempFileNameSet.hpp:27, from ./libmaus2/suffixsort/BwtMergeBlockSortResult.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:33: ./libmaus2/util/DirectoryStructure.hpp: In member function ‘std::string libmaus2::util::DirectoryStructure::printGenerate(std::ostream&, std::string, uint64_t) const’: ./libmaus2/util/DirectoryStructure.hpp:207:58: warning: variable ‘batchcnt’ set but not used [-Wunused-but-set-variable=] 207 | uint64_t batchcnt = 0; | ^~~~~~~~ ./libmaus2/util/DirectoryStructure.hpp: In member function ‘std::string libmaus2::util::DirectoryStructure::printRemove(std::ostream&, std::string, uint64_t) const’: ./libmaus2/util/DirectoryStructure.hpp:282:58: warning: variable ‘batchcnt’ set but not used [-Wunused-but-set-variable=] 282 | uint64_t batchcnt = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:183, from ./libmaus2/huffman/CanonicalEncoder.hpp:26, from ./libmaus2/huffman/RLEncoder.hpp:25, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22: ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 2]’: ./libmaus2/huffman/HuffmanSorting.hpp:860:55: required from here 860 | huffman::EncodeTable enctable ( root ); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:188: ./libmaus2/huffman/HuffmanSorting.hpp: In instantiation of ‘static void libmaus2::huffman::HuffmanSorting::uncompressHuffmanCoded(uint64_t*, uint64_t, uint64_t, uint64_t, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::HuffmanTreeNode*, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::EncodeTable&) [with unsigned int lookupwords = 2; uint64_t = long unsigned int]’: ./libmaus2/huffman/HuffmanSorting.hpp:1091:27: required from here 1091 | uncompressHuffmanCoded(acode.get(), 0 /* bit offset */, lowhalf /* syms */, firsthighsym, enctable,dectable,root.get(),dectable0,dectable1,enctable0,enctable1); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/huffman/HuffmanSorting.hpp:534:42: warning: variable ‘alldecoffset’ set but not used [-Wunused-but-set-variable=] 534 | uint64_t alldecoffset = highdecoffset; | ^~~~~~~~~~~~ ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 1]’: ./libmaus2/huffman/CanonicalEncoder.hpp:219:116: required from here 219 | return ::libmaus2::huffman::EncodeTable<1>::unique_ptr_type(new ::libmaus2::huffman::EncodeTable<1>(Ptree.get())); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/wavelet/RlToHwtBase.hpp:30, from ./libmaus2/wavelet/RlToHwtTermRequest.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:44: ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp: In instantiation of ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTree(libmaus2::autoarray::AutoArray&, const std::string&, const std::string&, const libmaus2::huffman::HuffmanTree*, uint64_t) [with bool radixsort = true; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’: ./libmaus2/suffixsort/BwtMergeBlockSortRequest.hpp:862:90: required from ‘libmaus2::suffixsort::BwtMergeBlockSortResult libmaus2::suffixsort::BwtMergeBlockSortRequest::sortBlock(std::ostream*) const [with input_types_type = libmaus2::suffixsort::ByteInputTypes<32>; rl_encoder = libmaus2::huffman::RLEncoderTemplate, libmaus2::bitio::FastWriteBitWriterTemplate >, 128, 255, false> > >; std::ostream = std::basic_ostream]’ 862 | ::libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTree( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 863 | UT,tmpfilenames.getHWT(),tmpfileprefix,uhnode.get(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 864 | 1/* num threads */ | ~~~~~~~~~~~~~~~~~~ 865 | ); | ~ ./libmaus2/suffixsort/BwtMergeBlockSortRequest.hpp:979:79: required from ‘std::string libmaus2::suffixsort::BwtMergeBlockSortRequest::dispatch(std::ostream*) const [with rl_encoder = libmaus2::huffman::RLEncoderTemplate, libmaus2::bitio::FastWriteBitWriterTemplate >, 128, 255, false> > >; std::string = std::__cxx11::basic_string; std::ostream = std::basic_ostream]’ 979 | result = sortBlock,rl_encoder>(logstr); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BaseBlockSortThread.hpp:128:118: required from here 128 | block->sortresult = ::libmaus2::suffixsort::BwtMergeBlockSortResult::load(block->sortreq.dispatch(logstr)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:874:90: warning: variable ‘l_numsyms0’ set but not used [-Wunused-but-set-variable=] 874 | uint64_t l_numsyms0 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:879:90: warning: variable ‘r_numsyms1’ set but not used [-Wunused-but-set-variable=] 879 | uint64_t r_numsyms1 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:755:66: warning: variable ‘numsyms1’ set but not used [-Wunused-but-set-variable=] 755 | uint64_t numsyms1 = 0; | ^~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testbwtconstruction test/testbwtconstruction-testbwtconstruction.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testbwtconstruction test/testbwtconstruction-testbwtconstruction.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testbwtconstructionfasta-testbwtconstructionfasta.o `test -f 'test/testbwtconstructionfasta.cpp' || echo './'`test/testbwtconstructionfasta.cpp In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/util/IntervalTree.hpp:25, from ./libmaus2/gamma/GammaRLDecoder.hpp:28, from ./libmaus2/gamma/GammaRLEncoder.hpp:29, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:24, from ./libmaus2/suffixsort/bwtb3m/BwtMergeComputeSampledSA.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from test/testbwtconstructionfasta.cpp:22: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/suffixsort/bwtb3m/GapArrayWrapper.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeIsaParallelBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:24: ./libmaus2/util/AtomicArray.hpp: At global scope: ./libmaus2/util/AtomicArray.hpp:45:43: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 45 | AtomicArray(AtomicArray const & O) = delete; | ^~~~~~~~~~~~~~~~~ ./libmaus2/util/AtomicArray.hpp:45:43: note: remove the ‘< >’ In file included from ./libmaus2/suffixsort/bwtb3m/BwtMergeIsaParallelBase.hpp:24: ./libmaus2/suffixsort/GapArrayByte.hpp: In member function ‘void libmaus2::suffixsort::GapArrayByte::flush()’: ./libmaus2/suffixsort/GapArrayByte.hpp:134:42: warning: variable ‘overflowcnt’ set but not used [-Wunused-but-set-variable=] 134 | uint64_t overflowcnt = 0; | ^~~~~~~~~~~ In file included from ./libmaus2/suffixsort/BwtMergeTempFileNameSet.hpp:27, from ./libmaus2/suffixsort/BwtMergeBlockSortResult.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:33: ./libmaus2/util/DirectoryStructure.hpp: In member function ‘std::string libmaus2::util::DirectoryStructure::printGenerate(std::ostream&, std::string, uint64_t) const’: ./libmaus2/util/DirectoryStructure.hpp:207:58: warning: variable ‘batchcnt’ set but not used [-Wunused-but-set-variable=] 207 | uint64_t batchcnt = 0; | ^~~~~~~~ ./libmaus2/util/DirectoryStructure.hpp: In member function ‘std::string libmaus2::util::DirectoryStructure::printRemove(std::ostream&, std::string, uint64_t) const’: ./libmaus2/util/DirectoryStructure.hpp:282:58: warning: variable ‘batchcnt’ set but not used [-Wunused-but-set-variable=] 282 | uint64_t batchcnt = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:183, from ./libmaus2/huffman/CanonicalEncoder.hpp:26, from ./libmaus2/huffman/RLEncoder.hpp:25, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22: ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 2]’: ./libmaus2/huffman/HuffmanSorting.hpp:860:55: required from here 860 | huffman::EncodeTable enctable ( root ); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:188: ./libmaus2/huffman/HuffmanSorting.hpp: In instantiation of ‘static void libmaus2::huffman::HuffmanSorting::uncompressHuffmanCoded(uint64_t*, uint64_t, uint64_t, uint64_t, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::HuffmanTreeNode*, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::EncodeTable&) [with unsigned int lookupwords = 2; uint64_t = long unsigned int]’: ./libmaus2/huffman/HuffmanSorting.hpp:1091:27: required from here 1091 | uncompressHuffmanCoded(acode.get(), 0 /* bit offset */, lowhalf /* syms */, firsthighsym, enctable,dectable,root.get(),dectable0,dectable1,enctable0,enctable1); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/huffman/HuffmanSorting.hpp:534:42: warning: variable ‘alldecoffset’ set but not used [-Wunused-but-set-variable=] 534 | uint64_t alldecoffset = highdecoffset; | ^~~~~~~~~~~~ ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 1]’: ./libmaus2/huffman/CanonicalEncoder.hpp:219:116: required from here 219 | return ::libmaus2::huffman::EncodeTable<1>::unique_ptr_type(new ::libmaus2::huffman::EncodeTable<1>(Ptree.get())); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/wavelet/RlToHwtBase.hpp:30, from ./libmaus2/wavelet/RlToHwtTermRequest.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:44: ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp: In instantiation of ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTree(libmaus2::autoarray::AutoArray&, const std::string&, const std::string&, const libmaus2::huffman::HuffmanTree*, uint64_t) [with bool radixsort = true; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’: ./libmaus2/suffixsort/BwtMergeBlockSortRequest.hpp:862:90: required from ‘libmaus2::suffixsort::BwtMergeBlockSortResult libmaus2::suffixsort::BwtMergeBlockSortRequest::sortBlock(std::ostream*) const [with input_types_type = libmaus2::suffixsort::ByteInputTypes<32>; rl_encoder = libmaus2::huffman::RLEncoderTemplate, libmaus2::bitio::FastWriteBitWriterTemplate >, 128, 255, false> > >; std::ostream = std::basic_ostream]’ 862 | ::libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTree( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 863 | UT,tmpfilenames.getHWT(),tmpfileprefix,uhnode.get(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 864 | 1/* num threads */ | ~~~~~~~~~~~~~~~~~~ 865 | ); | ~ ./libmaus2/suffixsort/BwtMergeBlockSortRequest.hpp:979:79: required from ‘std::string libmaus2::suffixsort::BwtMergeBlockSortRequest::dispatch(std::ostream*) const [with rl_encoder = libmaus2::huffman::RLEncoderTemplate, libmaus2::bitio::FastWriteBitWriterTemplate >, 128, 255, false> > >; std::string = std::__cxx11::basic_string; std::ostream = std::basic_ostream]’ 979 | result = sortBlock,rl_encoder>(logstr); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BaseBlockSortThread.hpp:128:118: required from here 128 | block->sortresult = ::libmaus2::suffixsort::BwtMergeBlockSortResult::load(block->sortreq.dispatch(logstr)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:874:90: warning: variable ‘l_numsyms0’ set but not used [-Wunused-but-set-variable=] 874 | uint64_t l_numsyms0 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:879:90: warning: variable ‘r_numsyms1’ set but not used [-Wunused-but-set-variable=] 879 | uint64_t r_numsyms1 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:755:66: warning: variable ‘numsyms1’ set but not used [-Wunused-but-set-variable=] 755 | uint64_t numsyms1 = 0; | ^~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testbwtconstructionfasta test/testbwtconstructionfasta-testbwtconstructionfasta.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testbwtconstructionfasta test/testbwtconstructionfasta-testbwtconstructionfasta.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testarrayinput-testarrayinput.o `test -f 'test/testarrayinput.cpp' || echo './'`test/testarrayinput.cpp /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testarrayinput test/testarrayinput-testarrayinput.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testarrayinput test/testarrayinput-testarrayinput.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testsymcnt-testsymcnt.o `test -f 'test/testsymcnt.cpp' || echo './'`test/testsymcnt.cpp In file included from ./libmaus2/huffman/huffman.hpp:183, from ./libmaus2/huffman/CanonicalEncoder.hpp:26, from ./libmaus2/huffman/SymCountEncoder.hpp:26, from test/testsymcnt.cpp:18: ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 2]’: ./libmaus2/huffman/HuffmanSorting.hpp:860:55: required from here 860 | huffman::EncodeTable enctable ( root ); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:188: ./libmaus2/huffman/HuffmanSorting.hpp: In instantiation of ‘static void libmaus2::huffman::HuffmanSorting::uncompressHuffmanCoded(uint64_t*, uint64_t, uint64_t, uint64_t, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::HuffmanTreeNode*, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::EncodeTable&) [with unsigned int lookupwords = 2; uint64_t = long unsigned int]’: ./libmaus2/huffman/HuffmanSorting.hpp:1091:27: required from here 1091 | uncompressHuffmanCoded(acode.get(), 0 /* bit offset */, lowhalf /* syms */, firsthighsym, enctable,dectable,root.get(),dectable0,dectable1,enctable0,enctable1); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/huffman/HuffmanSorting.hpp:534:42: warning: variable ‘alldecoffset’ set but not used [-Wunused-but-set-variable=] 534 | uint64_t alldecoffset = highdecoffset; | ^~~~~~~~~~~~ ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 1]’: ./libmaus2/huffman/CanonicalEncoder.hpp:219:116: required from here 219 | return ::libmaus2::huffman::EncodeTable<1>::unique_ptr_type(new ::libmaus2::huffman::EncodeTable<1>(Ptree.get())); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testsymcnt test/testsymcnt-testsymcnt.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testsymcnt test/testsymcnt-testsymcnt.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testgammapd-testgammapd.o `test -f 'test/testgammapd.cpp' || echo './'`test/testgammapd.cpp /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testgammapd test/testgammapd-testgammapd.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testgammapd test/testgammapd-testgammapd.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testdnasuffixtrav-testdnasuffixtrav.o `test -f 'test/testdnasuffixtrav.cpp' || echo './'`test/testdnasuffixtrav.cpp In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/util/IntervalTree.hpp:25, from ./libmaus2/gamma/GammaRLDecoder.hpp:28, from ./libmaus2/gamma/GammaRLEncoder.hpp:29, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:24, from ./libmaus2/suffixsort/bwtb3m/BwtMergeComputeSampledSA.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from test/testdnasuffixtrav.cpp:19: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/suffixsort/bwtb3m/GapArrayWrapper.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeIsaParallelBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:24: ./libmaus2/util/AtomicArray.hpp: At global scope: ./libmaus2/util/AtomicArray.hpp:45:43: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 45 | AtomicArray(AtomicArray const & O) = delete; | ^~~~~~~~~~~~~~~~~ ./libmaus2/util/AtomicArray.hpp:45:43: note: remove the ‘< >’ In file included from ./libmaus2/suffixsort/bwtb3m/BwtMergeIsaParallelBase.hpp:24: ./libmaus2/suffixsort/GapArrayByte.hpp: In member function ‘void libmaus2::suffixsort::GapArrayByte::flush()’: ./libmaus2/suffixsort/GapArrayByte.hpp:134:42: warning: variable ‘overflowcnt’ set but not used [-Wunused-but-set-variable=] 134 | uint64_t overflowcnt = 0; | ^~~~~~~~~~~ In file included from ./libmaus2/suffixsort/BwtMergeTempFileNameSet.hpp:27, from ./libmaus2/suffixsort/BwtMergeBlockSortResult.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:33: ./libmaus2/util/DirectoryStructure.hpp: In member function ‘std::string libmaus2::util::DirectoryStructure::printGenerate(std::ostream&, std::string, uint64_t) const’: ./libmaus2/util/DirectoryStructure.hpp:207:58: warning: variable ‘batchcnt’ set but not used [-Wunused-but-set-variable=] 207 | uint64_t batchcnt = 0; | ^~~~~~~~ ./libmaus2/util/DirectoryStructure.hpp: In member function ‘std::string libmaus2::util::DirectoryStructure::printRemove(std::ostream&, std::string, uint64_t) const’: ./libmaus2/util/DirectoryStructure.hpp:282:58: warning: variable ‘batchcnt’ set but not used [-Wunused-but-set-variable=] 282 | uint64_t batchcnt = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:183, from ./libmaus2/huffman/CanonicalEncoder.hpp:26, from ./libmaus2/huffman/RLEncoder.hpp:25, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22: ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 2]’: ./libmaus2/huffman/HuffmanSorting.hpp:860:55: required from here 860 | huffman::EncodeTable enctable ( root ); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:188: ./libmaus2/huffman/HuffmanSorting.hpp: In instantiation of ‘static void libmaus2::huffman::HuffmanSorting::uncompressHuffmanCoded(uint64_t*, uint64_t, uint64_t, uint64_t, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::HuffmanTreeNode*, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::EncodeTable&) [with unsigned int lookupwords = 2; uint64_t = long unsigned int]’: ./libmaus2/huffman/HuffmanSorting.hpp:1091:27: required from here 1091 | uncompressHuffmanCoded(acode.get(), 0 /* bit offset */, lowhalf /* syms */, firsthighsym, enctable,dectable,root.get(),dectable0,dectable1,enctable0,enctable1); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/huffman/HuffmanSorting.hpp:534:42: warning: variable ‘alldecoffset’ set but not used [-Wunused-but-set-variable=] 534 | uint64_t alldecoffset = highdecoffset; | ^~~~~~~~~~~~ ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 1]’: ./libmaus2/huffman/CanonicalEncoder.hpp:219:116: required from here 219 | return ::libmaus2::huffman::EncodeTable<1>::unique_ptr_type(new ::libmaus2::huffman::EncodeTable<1>(Ptree.get())); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/wavelet/RlToHwtBase.hpp:30, from ./libmaus2/wavelet/RlToHwtTermRequest.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:44: ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp: In instantiation of ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTree(libmaus2::autoarray::AutoArray&, const std::string&, const std::string&, const libmaus2::huffman::HuffmanTree*, uint64_t) [with bool radixsort = true; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’: ./libmaus2/suffixsort/BwtMergeBlockSortRequest.hpp:862:90: required from ‘libmaus2::suffixsort::BwtMergeBlockSortResult libmaus2::suffixsort::BwtMergeBlockSortRequest::sortBlock(std::ostream*) const [with input_types_type = libmaus2::suffixsort::ByteInputTypes<32>; rl_encoder = libmaus2::huffman::RLEncoderTemplate, libmaus2::bitio::FastWriteBitWriterTemplate >, 128, 255, false> > >; std::ostream = std::basic_ostream]’ 862 | ::libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTree( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 863 | UT,tmpfilenames.getHWT(),tmpfileprefix,uhnode.get(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 864 | 1/* num threads */ | ~~~~~~~~~~~~~~~~~~ 865 | ); | ~ ./libmaus2/suffixsort/BwtMergeBlockSortRequest.hpp:979:79: required from ‘std::string libmaus2::suffixsort::BwtMergeBlockSortRequest::dispatch(std::ostream*) const [with rl_encoder = libmaus2::huffman::RLEncoderTemplate, libmaus2::bitio::FastWriteBitWriterTemplate >, 128, 255, false> > >; std::string = std::__cxx11::basic_string; std::ostream = std::basic_ostream]’ 979 | result = sortBlock,rl_encoder>(logstr); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BaseBlockSortThread.hpp:128:118: required from here 128 | block->sortresult = ::libmaus2::suffixsort::BwtMergeBlockSortResult::load(block->sortreq.dispatch(logstr)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:874:90: warning: variable ‘l_numsyms0’ set but not used [-Wunused-but-set-variable=] 874 | uint64_t l_numsyms0 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:879:90: warning: variable ‘r_numsyms1’ set but not used [-Wunused-but-set-variable=] 879 | uint64_t r_numsyms1 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:755:66: warning: variable ‘numsyms1’ set but not used [-Wunused-but-set-variable=] 755 | uint64_t numsyms1 = 0; | ^~~~~~~~ In file included from ./libmaus2/lz/StreamWrapperBuffer.hpp:23, from ./libmaus2/lz/StreamWrapper.hpp:22, from ./libmaus2/aio/PosixFdInput.hpp:26, from ./libmaus2/aio/PosixFdInputWrapper.hpp:22, from ./libmaus2/aio/PosixFdInputStream.hpp:22, from ./libmaus2/aio/PosixFdInputStreamFactory.hpp:23, from ./libmaus2/aio/InputStreamFactoryContainer.hpp:23, from test/testdnasuffixtrav.cpp:18: In static member function ‘static void libmaus2::autoarray::ArrayErase::erase(N*, uint64_t) [with N = libmaus2::rank::DNARankSuffixTreeNodeEnumeratorQueueElement]’, inlined from ‘libmaus2::autoarray::AutoArray::AutoArray(uint64_t, bool) [with N = libmaus2::rank::DNARankSuffixTreeNodeEnumeratorQueueElement; libmaus2::autoarray::alloc_type atype = libmaus2::autoarray::alloc_type_cxx; erase_type = libmaus2::autoarray::ArrayErase]’ at ./libmaus2/autoarray/AutoArray.hpp:921:23, inlined from ‘libmaus2::util::SimpleQueue<_value_type>::SimpleQueue() [with _value_type = libmaus2::rank::DNARankSuffixTreeNodeEnumeratorQueueElement]’ at ./libmaus2/util/SimpleQueue.hpp:105:6, inlined from ‘libmaus2::rank::DNARankSuffixTreeNodeEnumerator::DNARankSuffixTreeNodeEnumerator(libmaus2::rank::DNARank&)’ at ./libmaus2/rank/DNARankSuffixTreeNodeEnumerator.hpp:41:84, inlined from ‘void transform(const std::string&)’ at test/testdnasuffixtrav.cpp:55:62: ./libmaus2/autoarray/AutoArray.hpp:1152:33: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 1152 | array[i] = N(); | ^~~~~ ./libmaus2/autoarray/AutoArray.hpp: In function ‘void transform(const std::string&)’: ./libmaus2/autoarray/AutoArray.hpp:1152:44: note: ‘’ declared here 1152 | array[i] = N(); | ^~~ /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testdnasuffixtrav test/testdnasuffixtrav-testdnasuffixtrav.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testdnasuffixtrav test/testdnasuffixtrav-testdnasuffixtrav.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testserialisedsorting-testserialisedsorting.o `test -f 'test/testserialisedsorting.cpp' || echo './'`test/testserialisedsorting.cpp /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testserialisedsorting test/testserialisedsorting-testserialisedsorting.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testserialisedsorting test/testserialisedsorting-testserialisedsorting.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testbamnumericalindex-testbamnumericalindex.o `test -f 'test/testbamnumericalindex.cpp' || echo './'`test/testbamnumericalindex.cpp In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/bambam/BamAuxFilterVector.hpp:22, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:27, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from test/testbamnumericalindex.cpp:19: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/bambam/CigarStringParser.hpp:25, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ In file included from ./libmaus2/bambam/BamAlignmentDecoder.hpp:24: ./libmaus2/bambam/BamHeaderLowMem.hpp: In member function ‘void libmaus2::bambam::BamHeaderLowMem::setupFromText()’: ./libmaus2/bambam/BamHeaderLowMem.hpp:366:58: warning: variable ‘ln’ set but not used [-Wunused-but-set-variable=] 366 | uint64_t ln = 0; | ^~ /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testbamnumericalindex test/testbamnumericalindex-testbamnumericalindex.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testbamnumericalindex test/testbamnumericalindex-testbamnumericalindex.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testnpl-testnpl.o `test -f 'test/testnpl.cpp' || echo './'`test/testnpl.cpp In file included from ./libmaus2/lcs/Aligner.hpp:21, from ./libmaus2/lcs/NPNoTrace.hpp:21, from ./libmaus2/lcs/NPLinMem.hpp:21, from test/testnpl.cpp:18: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ In file included from test/testnpl.cpp:21: ./libmaus2/lcs/NNPCor.hpp: In instantiation of ‘libmaus2::lcs::NNPAlignResult libmaus2::lcs::NNPCor::alignLinMem(iterator, iterator, uint64_t, iterator, iterator, uint64_t, libmaus2::lcs::AlignmentTraceContainer&, uint64_t, bool) [with iterator = __gnu_cxx::__normal_iterator >; uint64_t = long unsigned int]’: test/testnpl.cpp:118:77: required from here 118 | libmaus2::lcs::NNPAlignResult nres = cor.alignLinMem(a.begin(),a.end(),0,b.begin(),b.end(),0,ATC); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/lcs/NNPCor.hpp:1985:42: warning: variable ‘ed’ set but not used [-Wunused-but-set-variable=] 1985 | uint64_t ed = 0; | ^~ ./libmaus2/lcs/NNPCor.hpp: In instantiation of ‘libmaus2::lcs::NNPAlignResult libmaus2::lcs::NNPCor::alignLinMemForward(std::pair, iterator, iterator, iterator, iterator, libmaus2::lcs::AlignmentTraceContainer&, uint64_t, bool) [with iterator = __gnu_cxx::__normal_iterator >; uint64_t = long unsigned int]’: ./libmaus2/lcs/NNPCor.hpp:2219:40: required from ‘libmaus2::lcs::NNPAlignResult libmaus2::lcs::NNPCor::alignLinMemForward(iterator, iterator, iterator, iterator, libmaus2::lcs::AlignmentTraceContainer&, uint64_t, bool) [with iterator = __gnu_cxx::__normal_iterator >; uint64_t = long unsigned int]’ 2219 | return alignLinMemForward(SLA,ab,ae,bb,be,ATC,d,corclip); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ test/testnpl.cpp:101:84: required from here 101 | libmaus2::lcs::NNPAlignResult nres = cor.alignLinMemForward(a.begin(),a.end(),b.begin(),b.end(),ATC); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/lcs/NNPCor.hpp:2114:42: warning: variable ‘ed’ set but not used [-Wunused-but-set-variable=] 2114 | uint64_t ed = 0; | ^~ /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testnpl test/testnpl-testnpl.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testnpl test/testnpl-testnpl.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testkcnt-testkcnt.o `test -f 'test/testkcnt.cpp' || echo './'`test/testkcnt.cpp /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testkcnt test/testkcnt-testkcnt.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testkcnt test/testkcnt-testkcnt.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testintervaltree-testintervaltree.o `test -f 'test/testintervaltree.cpp' || echo './'`test/testintervaltree.cpp /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testintervaltree test/testintervaltree-testintervaltree.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testintervaltree test/testintervaltree-testintervaltree.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testbamgetrefreg-testbamgetrefreg.o `test -f 'test/testbamgetrefreg.cpp' || echo './'`test/testbamgetrefreg.cpp In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/bambam/BamAuxFilterVector.hpp:22, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:27, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from test/testbamgetrefreg.cpp:20: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/bambam/CigarStringParser.hpp:25, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ In file included from ./libmaus2/bambam/BamAlignmentDecoder.hpp:24: ./libmaus2/bambam/BamHeaderLowMem.hpp: In member function ‘void libmaus2::bambam::BamHeaderLowMem::setupFromText()’: ./libmaus2/bambam/BamHeaderLowMem.hpp:366:58: warning: variable ‘ln’ set but not used [-Wunused-but-set-variable=] 366 | uint64_t ln = 0; | ^~ /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testbamgetrefreg test/testbamgetrefreg-testbamgetrefreg.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testbamgetrefreg test/testbamgetrefreg-testbamgetrefreg.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/teststringgraph-teststringgraph.o `test -f 'test/teststringgraph.cpp' || echo './'`test/teststringgraph.cpp In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/util/IntervalTree.hpp:25, from ./libmaus2/fastx/FastInterval.hpp:25, from ./libmaus2/fastx/FastAReader.hpp:31, from test/teststringgraph.cpp:20: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o teststringgraph test/teststringgraph-teststringgraph.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/teststringgraph test/teststringgraph-teststringgraph.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testlognormal-testlognormal.o `test -f 'test/testlognormal.cpp' || echo './'`test/testlognormal.cpp In file included from test/testlognormal.cpp:19: ./libmaus2/random/LogNormalRandom.hpp: In static member function ‘static std::pair libmaus2::random::LogNormalRandom::estimateParameters(const std::vector&)’: ./libmaus2/random/LogNormalRandom.hpp:132:25: note: parameter passing for argument of type ‘std::pair’ when C++17 is enabled changed to match C++14 in GCC 10.1 132 | { | ^ In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/util/IntervalTree.hpp:25, from ./libmaus2/fastx/FastInterval.hpp:25, from ./libmaus2/fastx/FastAReader.hpp:31, from ./libmaus2/fastx/StreamFastAReader.hpp:23, from test/testlognormal.cpp:20: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testlognormal test/testlognormal-testlognormal.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testlognormal test/testlognormal-testlognormal.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testConstantSumCombinatorics-testConstantSumCombinatorics.o `test -f 'test/testConstantSumCombinatorics.cpp' || echo './'`test/testConstantSumCombinatorics.cpp /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testConstantSumCombinatorics test/testConstantSumCombinatorics-testConstantSumCombinatorics.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testConstantSumCombinatorics test/testConstantSumCombinatorics-testConstantSumCombinatorics.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testmatrix-testmatrix.o `test -f 'test/testmatrix.cpp' || echo './'`test/testmatrix.cpp /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testmatrix test/testmatrix-testmatrix.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testmatrix test/testmatrix-testmatrix.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testconvpowercache-testconvpowercache.o `test -f 'test/testconvpowercache.cpp' || echo './'`test/testconvpowercache.cpp /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testconvpowercache test/testconvpowercache-testconvpowercache.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testconvpowercache test/testconvpowercache-testconvpowercache.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testlassort-testlassort.o `test -f 'test/testlassort.cpp' || echo './'`test/testlassort.cpp In file included from ./libmaus2/lcs/Aligner.hpp:21, from ./libmaus2/dazzler/align/Overlap.hpp:22, from ./libmaus2/dazzler/align/OverlapData.hpp:23, from ./libmaus2/dazzler/align/OverlapParser.hpp:22, from ./libmaus2/dazzler/align/SimpleOverlapParser.hpp:22, from ./libmaus2/dazzler/align/LasSort2.hpp:21, from test/testlassort.cpp:20: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ In file included from ./libmaus2/dazzler/align/OverlapIndexer.hpp:30, from ./libmaus2/dazzler/align/LasSort2.hpp:26: ./libmaus2/index/ExternalMemoryIndexDecoder.hpp: In instantiation of ‘void libmaus2::index::ExternalMemoryIndexDecoder<_data_type, _base_level_log, _inner_level_log, _comparator>::setup(uint64_t) [with _data_type = libmaus2::dazzler::align::OverlapMeta; unsigned int _base_level_log = 8; unsigned int _inner_level_log = 3; _comparator = std::less; uint64_t = long unsigned int]’: ./libmaus2/index/ExternalMemoryIndexDecoder.hpp:183:5: required from ‘libmaus2::index::ExternalMemoryIndexDecoder<_data_type, _base_level_log, _inner_level_log, _comparator>::ExternalMemoryIndexDecoder(const std::string&, uint64_t) [with _data_type = libmaus2::dazzler::align::OverlapMeta; unsigned int _base_level_log = 8; unsigned int _inner_level_log = 3; _comparator = std::less; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’ 183 | setup(rcache_thres); | ^~~~~ ./libmaus2/dazzler/align/OverlapIndexer.hpp:109:108: required from here 109 | libmaus2::index::ExternalMemoryIndexDecoder EMID(indexname); | ^ ./libmaus2/index/ExternalMemoryIndexDecoder.hpp:99:46: warning: variable ‘numcache’ set but not used [-Wunused-but-set-variable=] 99 | unsigned int numcache = 0; | ^~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testlassort test/testlassort-testlassort.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testlassort test/testlassort-testlassort.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testnnplocalaligner-testnnplocalaligner.o `test -f 'test/testnnplocalaligner.cpp' || echo './'`test/testnnplocalaligner.cpp In file included from ./libmaus2/lcs/Aligner.hpp:21, from ./libmaus2/dazzler/align/Overlap.hpp:22, from test/testnnplocalaligner.cpp:21: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ In file included from ./libmaus2/dazzler/align/OverlapIndexer.hpp:30, from ./libmaus2/dazzler/align/AlignmentWriter.hpp:21, from test/testnnplocalaligner.cpp:24: ./libmaus2/index/ExternalMemoryIndexDecoder.hpp: In instantiation of ‘void libmaus2::index::ExternalMemoryIndexDecoder<_data_type, _base_level_log, _inner_level_log, _comparator>::setup(uint64_t) [with _data_type = libmaus2::dazzler::align::OverlapMeta; unsigned int _base_level_log = 8; unsigned int _inner_level_log = 3; _comparator = std::less; uint64_t = long unsigned int]’: ./libmaus2/index/ExternalMemoryIndexDecoder.hpp:183:5: required from ‘libmaus2::index::ExternalMemoryIndexDecoder<_data_type, _base_level_log, _inner_level_log, _comparator>::ExternalMemoryIndexDecoder(const std::string&, uint64_t) [with _data_type = libmaus2::dazzler::align::OverlapMeta; unsigned int _base_level_log = 8; unsigned int _inner_level_log = 3; _comparator = std::less; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’ 183 | setup(rcache_thres); | ^~~~~ ./libmaus2/dazzler/align/OverlapIndexer.hpp:109:108: required from here 109 | libmaus2::index::ExternalMemoryIndexDecoder EMID(indexname); | ^ ./libmaus2/index/ExternalMemoryIndexDecoder.hpp:99:46: warning: variable ‘numcache’ set but not used [-Wunused-but-set-variable=] 99 | unsigned int numcache = 0; | ^~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testnnplocalaligner test/testnnplocalaligner-testnnplocalaligner.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testnnplocalaligner test/testnnplocalaligner-testnnplocalaligner.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testBamRawDecoder-testBamRawDecoder.o `test -f 'test/testBamRawDecoder.cpp' || echo './'`test/testBamRawDecoder.cpp In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/bambam/BamAuxFilterVector.hpp:22, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:27, from test/testBamRawDecoder.cpp:21: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/bambam/CigarStringParser.hpp:25, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testBamRawDecoder test/testBamRawDecoder-testBamRawDecoder.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testBamRawDecoder test/testBamRawDecoder-testBamRawDecoder.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testpanic-testpanic.o `test -f 'test/testpanic.cpp' || echo './'`test/testpanic.cpp /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testpanic test/testpanic-testpanic.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testpanic test/testpanic-testpanic.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testavlset-testavlset.o `test -f 'test/testavlset.cpp' || echo './'`test/testavlset.cpp /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testavlset test/testavlset-testavlset.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testavlset test/testavlset-testavlset.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testlibcurl-testlibcurl.o `test -f 'test/testlibcurl.cpp' || echo './'`test/testlibcurl.cpp /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testlibcurl test/testlibcurl-testlibcurl.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testlibcurl test/testlibcurl-testlibcurl.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testRunLengthBitVector-testRunLengthBitVector.o `test -f 'test/testRunLengthBitVector.cpp' || echo './'`test/testRunLengthBitVector.cpp test/testRunLengthBitVector.cpp: In function ‘void testRunLengthBitVector(const libmaus2::util::ArgParser&)’: test/testRunLengthBitVector.cpp:124:34: warning: variable ‘runsum’ set but not used [-Wunused-but-set-variable=] 124 | uint64_t runsum = 0; | ^~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:183, from ./libmaus2/huffman/CanonicalEncoder.hpp:26, from ./libmaus2/huffman/RLDecoder.hpp:27, from test/testRunLengthBitVector.cpp:19: ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 2]’: ./libmaus2/huffman/HuffmanSorting.hpp:860:55: required from here 860 | huffman::EncodeTable enctable ( root ); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:188: ./libmaus2/huffman/HuffmanSorting.hpp: In instantiation of ‘static void libmaus2::huffman::HuffmanSorting::uncompressHuffmanCoded(uint64_t*, uint64_t, uint64_t, uint64_t, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::HuffmanTreeNode*, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::EncodeTable&) [with unsigned int lookupwords = 2; uint64_t = long unsigned int]’: ./libmaus2/huffman/HuffmanSorting.hpp:1091:27: required from here 1091 | uncompressHuffmanCoded(acode.get(), 0 /* bit offset */, lowhalf /* syms */, firsthighsym, enctable,dectable,root.get(),dectable0,dectable1,enctable0,enctable1); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/huffman/HuffmanSorting.hpp:534:42: warning: variable ‘alldecoffset’ set but not used [-Wunused-but-set-variable=] 534 | uint64_t alldecoffset = highdecoffset; | ^~~~~~~~~~~~ ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 1]’: ./libmaus2/huffman/CanonicalEncoder.hpp:219:116: required from here 219 | return ::libmaus2::huffman::EncodeTable<1>::unique_ptr_type(new ::libmaus2::huffman::EncodeTable<1>(Ptree.get())); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testRunLengthBitVector test/testRunLengthBitVector-testRunLengthBitVector.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testRunLengthBitVector test/testRunLengthBitVector-testRunLengthBitVector.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testnplself-testnplself.o `test -f 'test/testnplself.cpp' || echo './'`test/testnplself.cpp In file included from ./libmaus2/lcs/Aligner.hpp:21, from ./libmaus2/lcs/NPLSelf.hpp:21, from test/testnplself.cpp:18: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testnplself test/testnplself-testnplself.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testnplself test/testnplself-testnplself.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testCopy-testCopy.o `test -f 'test/testCopy.cpp' || echo './'`test/testCopy.cpp /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testCopy test/testCopy-testCopy.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testCopy test/testCopy-testCopy.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testprotalign-testprotalign.o `test -f 'test/testprotalign.cpp' || echo './'`test/testprotalign.cpp /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testprotalign test/testprotalign-testprotalign.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testprotalign test/testprotalign-testprotalign.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testparasail-testparasail.o `test -f 'test/testparasail.cpp' || echo './'`test/testparasail.cpp In file included from ./libmaus2/protein/ProteinAlignment.hpp:26, from test/testparasail.cpp:18: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testparasail test/testparasail-testparasail.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: powerpc64le-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testparasail test/testparasail-testparasail.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread make[3]: Leaving directory '/build/reproducible-path/libmaus2-2.0.813+ds/src' make[3]: Entering directory '/build/reproducible-path/libmaus2-2.0.813+ds' make[3]: Leaving directory '/build/reproducible-path/libmaus2-2.0.813+ds' make[2]: Leaving directory '/build/reproducible-path/libmaus2-2.0.813+ds' make[1]: Leaving directory '/build/reproducible-path/libmaus2-2.0.813+ds' dh: command-omitted: The call to "dh_auto_test -a" was omitted due to "DEB_BUILD_OPTIONS=nocheck" create-stamp debian/debhelper-build-stamp dh_prep -a dh_auto_install -a make -j1 install DESTDIR=/build/reproducible-path/libmaus2-2.0.813\+ds/debian/tmp AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/build/reproducible-path/libmaus2-2.0.813+ds' Making install in src make[2]: Entering directory '/build/reproducible-path/libmaus2-2.0.813+ds/src' make[3]: Entering directory '/build/reproducible-path/libmaus2-2.0.813+ds/src' /usr/bin/mkdir -p '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/powerpc64le-linux-gnu' /bin/bash ../libtool --mode=install /usr/bin/install -c libmaus2_arch.la libmaus2_posix.la libmaus2_demangle.la libmaus2_stacktrace.la libmaus2_exception.la libmaus2_autoarray.la libmaus2_parallel.la libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/powerpc64le-linux-gnu' libtool: install: /usr/bin/install -c .libs/libmaus2_arch.so.2.0.813 /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/powerpc64le-linux-gnu/libmaus2_arch.so.2.0.813 libtool: install: (cd /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/powerpc64le-linux-gnu && { ln -s -f libmaus2_arch.so.2.0.813 libmaus2_arch.so.2 || { rm -f libmaus2_arch.so.2 && ln -s libmaus2_arch.so.2.0.813 libmaus2_arch.so.2; }; }) libtool: install: (cd /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/powerpc64le-linux-gnu && { ln -s -f libmaus2_arch.so.2.0.813 libmaus2_arch.so || { rm -f libmaus2_arch.so && ln -s libmaus2_arch.so.2.0.813 libmaus2_arch.so; }; }) libtool: install: /usr/bin/install -c .libs/libmaus2_arch.lai /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/powerpc64le-linux-gnu/libmaus2_arch.la libtool: install: /usr/bin/install -c .libs/libmaus2_posix.so.2.0.813 /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/powerpc64le-linux-gnu/libmaus2_posix.so.2.0.813 libtool: install: (cd /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/powerpc64le-linux-gnu && { ln -s -f libmaus2_posix.so.2.0.813 libmaus2_posix.so.2 || { rm -f libmaus2_posix.so.2 && ln -s libmaus2_posix.so.2.0.813 libmaus2_posix.so.2; }; }) libtool: install: (cd /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/powerpc64le-linux-gnu && { ln -s -f libmaus2_posix.so.2.0.813 libmaus2_posix.so || { rm -f libmaus2_posix.so && ln -s libmaus2_posix.so.2.0.813 libmaus2_posix.so; }; }) libtool: install: /usr/bin/install -c .libs/libmaus2_posix.lai /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/powerpc64le-linux-gnu/libmaus2_posix.la libtool: install: /usr/bin/install -c .libs/libmaus2_demangle.so.2.0.813 /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/powerpc64le-linux-gnu/libmaus2_demangle.so.2.0.813 libtool: install: (cd /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/powerpc64le-linux-gnu && { ln -s -f libmaus2_demangle.so.2.0.813 libmaus2_demangle.so.2 || { rm -f libmaus2_demangle.so.2 && ln -s libmaus2_demangle.so.2.0.813 libmaus2_demangle.so.2; }; }) libtool: install: (cd /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/powerpc64le-linux-gnu && { ln -s -f libmaus2_demangle.so.2.0.813 libmaus2_demangle.so || { rm -f libmaus2_demangle.so && ln -s libmaus2_demangle.so.2.0.813 libmaus2_demangle.so; }; }) libtool: install: /usr/bin/install -c .libs/libmaus2_demangle.lai /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/powerpc64le-linux-gnu/libmaus2_demangle.la libtool: warning: relinking 'libmaus2_stacktrace.la' libtool: install: (cd /build/reproducible-path/libmaus2-2.0.813+ds/src; /bin/bash "/build/reproducible-path/libmaus2-2.0.813+ds/libtool" --tag CXX --mode=relink powerpc64le-linux-gnu-g++ -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -version-info 2:813:0 -L/lib -Wl,-z,relro -Wl,-z,now -o libmaus2_stacktrace.la -rpath /usr/lib/powerpc64le-linux-gnu libmaus2/stacktrace/la-StackTrace.lo libmaus2/stacktrace/la-StackTraceBufferContainer.lo libmaus2_posix.la libmaus2_demangle.la -lz -inst-prefix-dir /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp) libtool: relink: powerpc64le-linux-gnu-g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc-cross/powerpc64le-linux-gnu/16/../../../../powerpc64le-linux-gnu/lib/../lib/crti.o /usr/lib/gcc-cross/powerpc64le-linux-gnu/16/crtbeginS.o libmaus2/stacktrace/.libs/la-StackTrace.o libmaus2/stacktrace/.libs/la-StackTraceBufferContainer.o -L/lib -L/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/powerpc64le-linux-gnu -L/usr/lib/powerpc64le-linux-gnu -lmaus2_posix -lmaus2_demangle -lz -L/usr/lib/gcc-cross/powerpc64le-linux-gnu/16 -L/usr/lib/gcc-cross/powerpc64le-linux-gnu/16/../../../../powerpc64le-linux-gnu/lib/../lib -L/lib/powerpc64le-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc-cross/powerpc64le-linux-gnu/16/../../../../powerpc64le-linux-gnu/lib -L/usr/lib -lstdc++ -lm -lgcc_s -latomic_asneeded -lc -lgcc_s /usr/lib/gcc-cross/powerpc64le-linux-gnu/16/crtendS.o /usr/lib/gcc-cross/powerpc64le-linux-gnu/16/../../../../powerpc64le-linux-gnu/lib/../lib/crtn.o -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-z -Wl,relro -Wl,-z -Wl,now -pthread -fopenmp -Wl,-soname -Wl,libmaus2_stacktrace.so.2 -o .libs/libmaus2_stacktrace.so.2.0.813 libtool: install: /usr/bin/install -c .libs/libmaus2_stacktrace.so.2.0.813T /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/powerpc64le-linux-gnu/libmaus2_stacktrace.so.2.0.813 libtool: install: (cd /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/powerpc64le-linux-gnu && { ln -s -f libmaus2_stacktrace.so.2.0.813 libmaus2_stacktrace.so.2 || { rm -f libmaus2_stacktrace.so.2 && ln -s libmaus2_stacktrace.so.2.0.813 libmaus2_stacktrace.so.2; }; }) libtool: install: (cd /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/powerpc64le-linux-gnu && { ln -s -f libmaus2_stacktrace.so.2.0.813 libmaus2_stacktrace.so || { rm -f libmaus2_stacktrace.so && ln -s libmaus2_stacktrace.so.2.0.813 libmaus2_stacktrace.so; }; }) libtool: install: /usr/bin/install -c .libs/libmaus2_stacktrace.lai /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/powerpc64le-linux-gnu/libmaus2_stacktrace.la libtool: warning: relinking 'libmaus2_exception.la' libtool: install: (cd /build/reproducible-path/libmaus2-2.0.813+ds/src; /bin/bash "/build/reproducible-path/libmaus2-2.0.813+ds/libtool" --tag CXX --mode=relink powerpc64le-linux-gnu-g++ -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -version-info 2:813:0 -L/lib -Wl,-z,relro -Wl,-z,now -o libmaus2_exception.la -rpath /usr/lib/powerpc64le-linux-gnu libmaus2/exception/la-LibMausException.lo libmaus2_stacktrace.la libmaus2_demangle.la -lz -inst-prefix-dir /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp) libtool: relink: powerpc64le-linux-gnu-g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc-cross/powerpc64le-linux-gnu/16/../../../../powerpc64le-linux-gnu/lib/../lib/crti.o /usr/lib/gcc-cross/powerpc64le-linux-gnu/16/crtbeginS.o libmaus2/exception/.libs/la-LibMausException.o -L/lib -L/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/powerpc64le-linux-gnu -L/usr/lib/powerpc64le-linux-gnu -lmaus2_stacktrace -lmaus2_demangle -lz -L/usr/lib/gcc-cross/powerpc64le-linux-gnu/16 -L/usr/lib/gcc-cross/powerpc64le-linux-gnu/16/../../../../powerpc64le-linux-gnu/lib/../lib -L/lib/powerpc64le-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc-cross/powerpc64le-linux-gnu/16/../../../../powerpc64le-linux-gnu/lib -L/usr/lib -lstdc++ -lm -lgcc_s -latomic_asneeded -lc -lgcc_s /usr/lib/gcc-cross/powerpc64le-linux-gnu/16/crtendS.o /usr/lib/gcc-cross/powerpc64le-linux-gnu/16/../../../../powerpc64le-linux-gnu/lib/../lib/crtn.o -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-z -Wl,relro -Wl,-z -Wl,now -pthread -fopenmp -Wl,-soname -Wl,libmaus2_exception.so.2 -o .libs/libmaus2_exception.so.2.0.813 libtool: install: /usr/bin/install -c .libs/libmaus2_exception.so.2.0.813T /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/powerpc64le-linux-gnu/libmaus2_exception.so.2.0.813 libtool: install: (cd /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/powerpc64le-linux-gnu && { ln -s -f libmaus2_exception.so.2.0.813 libmaus2_exception.so.2 || { rm -f libmaus2_exception.so.2 && ln -s libmaus2_exception.so.2.0.813 libmaus2_exception.so.2; }; }) libtool: install: (cd /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/powerpc64le-linux-gnu && { ln -s -f libmaus2_exception.so.2.0.813 libmaus2_exception.so || { rm -f libmaus2_exception.so && ln -s libmaus2_exception.so.2.0.813 libmaus2_exception.so; }; }) libtool: install: /usr/bin/install -c .libs/libmaus2_exception.lai /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/powerpc64le-linux-gnu/libmaus2_exception.la libtool: warning: relinking 'libmaus2_autoarray.la' libtool: install: (cd /build/reproducible-path/libmaus2-2.0.813+ds/src; /bin/bash "/build/reproducible-path/libmaus2-2.0.813+ds/libtool" --tag CXX --mode=relink powerpc64le-linux-gnu-g++ -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -version-info 2:813:0 -L/lib -Wl,-z,relro -Wl,-z,now -o libmaus2_autoarray.la -rpath /usr/lib/powerpc64le-linux-gnu libmaus2/autoarray/la-AutoArray.lo libmaus2_stacktrace.la libmaus2_demangle.la libmaus2_arch.la -lz -inst-prefix-dir /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp) libtool: relink: powerpc64le-linux-gnu-g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc-cross/powerpc64le-linux-gnu/16/../../../../powerpc64le-linux-gnu/lib/../lib/crti.o /usr/lib/gcc-cross/powerpc64le-linux-gnu/16/crtbeginS.o libmaus2/autoarray/.libs/la-AutoArray.o -L/lib -L/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/powerpc64le-linux-gnu -L/usr/lib/powerpc64le-linux-gnu -lmaus2_stacktrace -lmaus2_demangle -lmaus2_arch -lz -L/usr/lib/gcc-cross/powerpc64le-linux-gnu/16 -L/usr/lib/gcc-cross/powerpc64le-linux-gnu/16/../../../../powerpc64le-linux-gnu/lib/../lib -L/lib/powerpc64le-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc-cross/powerpc64le-linux-gnu/16/../../../../powerpc64le-linux-gnu/lib -L/usr/lib -lstdc++ -lm -lgcc_s -latomic_asneeded -lc -lgcc_s /usr/lib/gcc-cross/powerpc64le-linux-gnu/16/crtendS.o /usr/lib/gcc-cross/powerpc64le-linux-gnu/16/../../../../powerpc64le-linux-gnu/lib/../lib/crtn.o -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-z -Wl,relro -Wl,-z -Wl,now -pthread -fopenmp -Wl,-soname -Wl,libmaus2_autoarray.so.2 -o .libs/libmaus2_autoarray.so.2.0.813 libtool: install: /usr/bin/install -c .libs/libmaus2_autoarray.so.2.0.813T /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/powerpc64le-linux-gnu/libmaus2_autoarray.so.2.0.813 libtool: install: (cd /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/powerpc64le-linux-gnu && { ln -s -f libmaus2_autoarray.so.2.0.813 libmaus2_autoarray.so.2 || { rm -f libmaus2_autoarray.so.2 && ln -s libmaus2_autoarray.so.2.0.813 libmaus2_autoarray.so.2; }; }) libtool: install: (cd /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/powerpc64le-linux-gnu && { ln -s -f libmaus2_autoarray.so.2.0.813 libmaus2_autoarray.so || { rm -f libmaus2_autoarray.so && ln -s libmaus2_autoarray.so.2.0.813 libmaus2_autoarray.so; }; }) libtool: install: /usr/bin/install -c .libs/libmaus2_autoarray.lai /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/powerpc64le-linux-gnu/libmaus2_autoarray.la libtool: warning: relinking 'libmaus2_parallel.la' libtool: install: (cd /build/reproducible-path/libmaus2-2.0.813+ds/src; /bin/bash "/build/reproducible-path/libmaus2-2.0.813+ds/libtool" --tag CXX --mode=relink powerpc64le-linux-gnu-g++ -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -version-info 2:813:0 -L/lib -Wl,-z,relro -Wl,-z,now -o libmaus2_parallel.la -rpath /usr/lib/powerpc64le-linux-gnu libmaus2/parallel/la-SimpleThreadWorkPackage.lo libmaus2/parallel/la-StdSemaphore.lo libmaus2/parallel/la-StdMutex.lo libmaus2/parallel/la-StdSpinLock.lo libmaus2/parallel/la-StaticInitialisation.lo libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_demangle.la libmaus2_arch.la -lz -inst-prefix-dir /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp) libtool: relink: powerpc64le-linux-gnu-g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc-cross/powerpc64le-linux-gnu/16/../../../../powerpc64le-linux-gnu/lib/../lib/crti.o /usr/lib/gcc-cross/powerpc64le-linux-gnu/16/crtbeginS.o libmaus2/parallel/.libs/la-SimpleThreadWorkPackage.o libmaus2/parallel/.libs/la-StdSemaphore.o libmaus2/parallel/.libs/la-StdMutex.o libmaus2/parallel/.libs/la-StdSpinLock.o libmaus2/parallel/.libs/la-StaticInitialisation.o -L/lib -L/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/powerpc64le-linux-gnu -L/usr/lib/powerpc64le-linux-gnu -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_demangle -lmaus2_arch -lz -L/usr/lib/gcc-cross/powerpc64le-linux-gnu/16 -L/usr/lib/gcc-cross/powerpc64le-linux-gnu/16/../../../../powerpc64le-linux-gnu/lib/../lib -L/lib/powerpc64le-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc-cross/powerpc64le-linux-gnu/16/../../../../powerpc64le-linux-gnu/lib -L/usr/lib -lstdc++ -lm -lgcc_s -latomic_asneeded -lc -lgcc_s /usr/lib/gcc-cross/powerpc64le-linux-gnu/16/crtendS.o /usr/lib/gcc-cross/powerpc64le-linux-gnu/16/../../../../powerpc64le-linux-gnu/lib/../lib/crtn.o -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-z -Wl,relro -Wl,-z -Wl,now -pthread -fopenmp -Wl,-soname -Wl,libmaus2_parallel.so.2 -o .libs/libmaus2_parallel.so.2.0.813 libtool: install: /usr/bin/install -c .libs/libmaus2_parallel.so.2.0.813T /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/powerpc64le-linux-gnu/libmaus2_parallel.so.2.0.813 libtool: install: (cd /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/powerpc64le-linux-gnu && { ln -s -f libmaus2_parallel.so.2.0.813 libmaus2_parallel.so.2 || { rm -f libmaus2_parallel.so.2 && ln -s libmaus2_parallel.so.2.0.813 libmaus2_parallel.so.2; }; }) libtool: install: (cd /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/powerpc64le-linux-gnu && { ln -s -f libmaus2_parallel.so.2.0.813 libmaus2_parallel.so || { rm -f libmaus2_parallel.so && ln -s libmaus2_parallel.so.2.0.813 libmaus2_parallel.so; }; }) libtool: install: /usr/bin/install -c .libs/libmaus2_parallel.lai /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/powerpc64le-linux-gnu/libmaus2_parallel.la libtool: warning: relinking 'libmaus2.la' libtool: install: (cd /build/reproducible-path/libmaus2-2.0.813+ds/src; /bin/bash "/build/reproducible-path/libmaus2-2.0.813+ds/libtool" --tag CXX --mode=relink powerpc64le-linux-gnu-g++ -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -version-info 2:813:0 -L/lib -Wl,-z,relro -Wl,-z,now -o libmaus2.la -rpath /usr/lib/powerpc64le-linux-gnu libmaus2/la-StaticInitialization.lo libmaus2/bitio/la-CompactArray.lo libmaus2/rank/la-RankTable.lo libmaus2/rank/la-log2table.lo libmaus2/fastx/la-isFastQ.lo libmaus2/wavelet/la-toWaveletTreeBits.lo libmaus2/suffixsort/la-divsufsort.lo libmaus2/digest/la-md5.lo libmaus2/math/la-primes16.lo libmaus2/util/la-OutputFileNameTools.lo libmaus2/select/la-ESelectBase.lo libmaus2/bambam/la-CigarStringParser.lo libmaus2/fastx/la-Phred.lo libmaus2/lz/la-SnappyCompress.lo libmaus2/bambam/la-ReadEndsContainer.lo libmaus2/bambam/la-ReadEnds.lo libmaus2/huffman/la-IndexLoaderBase.lo libmaus2/bambam/la-BamAlignmentDecoderBase.lo libmaus2/bambam/la-StrCmpNum.lo libmaus2/huffman/la-KvInitResult.lo libmaus2/fm/la-MausFmToBwaConversion.lo libmaus2/util/la-TempFileNameGenerator.lo libmaus2/util/la-TempFileNameGeneratorState.lo libmaus2/util/la-ArgInfo.lo libmaus2/util/la-BitList.lo libmaus2/util/la-VarBitList.lo libmaus2/util/la-Concat.lo libmaus2/util/la-ConcatRequest.lo libmaus2/util/la-ConsoleColor.lo libmaus2/util/la-DynamicLoading.lo libmaus2/util/la-GetFileSize.lo libmaus2/util/la-Histogram.lo libmaus2/util/la-HistogramSet.lo libmaus2/util/la-IncreasingList.lo libmaus2/util/la-IntervalTree.lo libmaus2/util/la-GenericIntervalTree.lo libmaus2/util/la-LookupIntervalTree.lo libmaus2/digest/la-md5_interface.lo libmaus2/util/la-MemUsage.lo libmaus2/util/la-nstat.lo libmaus2/util/la-SaturatingCounter.lo libmaus2/util/la-StringSerialisation.lo libmaus2/util/la-SuccinctBorderArray.lo libmaus2/util/la-Terminal.lo libmaus2/util/la-OctetString.lo libmaus2/util/la-Utf8String.lo libmaus2/util/la-Utf8BlockIndexDecoder.lo libmaus2/util/la-Utf8BlockIndex.lo libmaus2/util/la-Utf8DecoderBuffer.lo libmaus2/util/la-Utf8DecoderWrapper.lo libmaus2/suffixtree/la-CompressedSuffixTree.lo libmaus2/bambam/la-AlignmentValidity.lo libmaus2/bambam/la-BamFlagBase.lo libmaus2/bambam/la-ReadGroup.lo libmaus2/bambam/la-DuplicationMetrics.lo libmaus2/bambam/la-BamDefaultAdapters.lo libmaus2/bambam/la-BamRange.lo libmaus2/bambam/la-BamIndexBinChunk.lo libmaus2/bambam/la-BamIndexLinearChunk.lo libmaus2/huffman/la-HuffmanTree.lo libmaus2/bambam/la-BamAlignmentDecoderInfo.lo libmaus2/lz/la-Lz4Base.lo libmaus2/lz/la-Lz4Compress.lo libmaus2/lz/la-Lz4DecoderBuffer.lo libmaus2/lz/la-lz4.lo libmaus2/fm/la-BidirectionalIndexInterval.lo libmaus2/fm/la-BidirectionalIndexIntervalSymbol.lo libmaus2/gamma/la-SparseGammaGapFileIndexDecoderEntry.lo libmaus2/fastx/la-FastALineParserLineInfo.lo libmaus2/fastx/la-FastAMatchTable.lo libmaus2/lcs/la-EditDistanceResult.lo libmaus2/fastx/la-FastABgzfIndexEntry.lo libmaus2/fastx/la-FastABgzfIndex.lo libmaus2/fastx/la-FastAIndexEntry.lo libmaus2/fastx/la-FastAIndex.lo libmaus2/hashing/la-Crc32.lo libmaus2/hashing/la-MurmurHash3.lo libmaus2/lcs/la-LocalBaseConstants.lo libmaus2/lcs/la-LocalEditDistanceResult.lo libmaus2/bambam/la-BamHeaderParserStateBase.lo libmaus2/bambam/la-GeneFlatFile.lo libmaus2/bambam/la-GeneFlatFileEntry.lo libmaus2/trie/la-SimpleTrie.lo libmaus2/bambam/la-BamStreamingMarkDuplicatesSupport.lo libmaus2/alignment/la-FactorMatchInfo.lo libmaus2/alignment/la-KmerInfo.lo libmaus2/bambam/la-SamInfoBase.lo libmaus2/digest/la-SHA1.lo libmaus2/digest/la-SHA2_224.lo libmaus2/digest/la-SHA2_256.lo libmaus2/digest/la-SHA2_384.lo libmaus2/digest/la-SHA2_512.lo libmaus2/digest/la-CRC32.lo libmaus2/digest/la-CRC32C_Core.lo libmaus2/digest/la-CRC32C.lo libmaus2/digest/la-CRC32_Core.lo libmaus2/bambam/parallel/la-ValidationFragment.lo libmaus2/bambam/parallel/la-GenericInputControlStreamInfo.lo libmaus2/fastx/la-NameInfoBase.lo libmaus2/bambam/parallel/la-RefIdInterval.lo libmaus2/fastx/la-RefPathToken.lo libmaus2/fastx/la-RefPathTokenVector.lo libmaus2/dazzler/db/la-FastaInfo.lo libmaus2/dazzler/db/la-IndexBase.lo libmaus2/dazzler/db/la-DatabaseFile.lo libmaus2/dazzler/db/la-Read.lo libmaus2/dazzler/align/la-Path.lo libmaus2/dazzler/align/la-Overlap.lo libmaus2/lcs/la-AlignmentStatistics.lo libmaus2/fastx/la-SingleWordDNABitBuffer.lo libmaus2/util/la-LongestIncreasingSubsequenceExtendedResult.lo libmaus2/lcs/la-AlignerFactory.lo libmaus2/lcs/la-BandedAlignerFactory.lo libmaus2/aio/la-InputStreamInstance.lo libmaus2/aio/la-OutputStreamInstance.lo libmaus2/aio/la-OutputStreamFactoryContainer.lo libmaus2/dazzler/align/la-TraceBlock.lo libmaus2/dazzler/align/la-ApproximateRun.lo libmaus2/suffixsort/la-BwtMergeBlockSortRequest.lo libmaus2/dazzler/align/la-OverlapMeta.lo libmaus2/dazzler/align/la-Tandem.lo libmaus2/dazzler/align/la-TandemVector.lo libmaus2/math/la-GmpInteger.lo libmaus2/math/la-GmpFloat.lo libmaus2/dazzler/align/la-TracePoint.lo libmaus2/lz/la-XzDecoder.lo libmaus2/util/la-ArgParser.lo libmaus2/fastx/la-DNAIndexMetaDataSequence.lo libmaus2/fastx/la-DNAIndexMetaData.lo libmaus2/bambam/la-PileVectorElement.lo libmaus2/bambam/la-PileQualityVectorElement.lo libmaus2/digest/la-SHA3_256.lo libmaus2/fastx/la-DNAIndexMetaDataBigBand.lo libmaus2/fastx/la-DNAIndexMetaDataBigBandBiDir.lo libmaus2/rank/la-DNARankBiDirRange.lo libmaus2/lcs/la-NNPTraceElement.lo libmaus2/lcs/la-NNPTraceContainer.lo libmaus2/lcs/la-NNPAlignResult.lo libmaus2/suffixsort/bwtb3m/la-MergeStrategyMergeGapRequest.lo libmaus2/suffixsort/bwtb3m/la-BwtMergeSort.lo libmaus2/suffixsort/bwtb3m/la-BwtComputeSSA.lo libmaus2/fastx/la-FastAToCompact4BigBand.lo libmaus2/suffixsort/bwtb3m/la-BwtMergeSortResult.lo libmaus2/lz/la-ZlibInterface.lo libmaus2/suffixsort/bwtb3m/la-BwtSelectSSA.lo libmaus2/aio/la-FileRemoval.lo libmaus2/rank/la-DNARankMEM.lo libmaus2/lcs/la-ChainAddQueueElement.lo libmaus2/lcs/la-Chain.lo libmaus2/lcs/la-ChainNode.lo libmaus2/lcs/la-ChainNodeInfo.lo libmaus2/lcs/la-ChainRemoveQueueElement.lo libmaus2/lcs/la-ChainSplayTreeNode.lo libmaus2/timing/la-RealTimeClock.lo libmaus2/aio/la-PosixFdOutputStreamFactory.lo libmaus2/dazzler/align/la-OverlapHeader.lo libmaus2/bambam/la-BamAlignment.lo libmaus2/suffixsort/bwtb3m/la-MergeStrategyMergeInput.lo libmaus2/aio/la-InputOutputStreamInstance.lo libmaus2/dazzler/align/la-OverlapInfo.lo libmaus2/dazzler/align/la-OverlapDataInterface.lo libmaus2/util/la-PathTools.lo libmaus2/aio/la-OFStreamOutputStreamFactory.lo libmaus2/aio/la-PosixFdInput.lo libmaus2/lz/la-BgzfDeflateHeaderFunctions.lo libmaus2/lz/la-BgzfDeflateZStreamBase.lo libmaus2/gtf/la-CDS.lo libmaus2/gtf/la-Exon.lo libmaus2/gtf/la-ExonInfo.lo libmaus2/gtf/la-ExonInterval.lo libmaus2/gtf/la-ExonSubInfo.lo libmaus2/protein/la-Blosum62.lo libmaus2/protein/la-CodonMapper.lo libmaus2/bambam/la-ChecksumsFactory.lo libmaus2/vcf/la-VCFSortEntry.lo libmaus2/network/la-CurlInitObject.lo libmaus2/network/la-CurlOutputBlock.lo libmaus2/network/la-CurlResponseAcceptor.lo libmaus2/network/la-HttpCurlResponseAcceptor.lo libmaus2/network/la-FtpCurlResponseAcceptor.lo libmaus2/network/la-CurlObject.lo libmaus2/network/la-CurlObjectReader.lo libmaus2/network/la-CurlObjectThreadCallable.lo libmaus2/network/la-CurlInputStreamBuffer.lo libmaus2/network/la-CurlInputStream.lo libmaus2/network/la-GetHostName.lo libmaus2/aio/la-SecrecyInputStreamFactory.lo libmaus2/aio/la-SecrecyOutputStreamFactory.lo libmaus2/bambam/la-Scram.lo libmaus2/bambam/parallel/la-ScramCramEncoding.lo libmaus2/parallel/threadpool/bgzf/la-BgzfDecompressContext.lo libmaus2/parallel/threadpool/bgzf/la-BgzfCompressContext.lo libmaus2/suffixsort/bwtb3m/la-BwtMergeIsaBase.lo libmaus2/suffixsort/bwtb3m/la-BwtMergeIsaParallelBase.lo libmaus2/suffixsort/bwtb3m/la-BwtMergeParallelGapFragMerge.lo libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplateByte32.lo libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplateLz432.lo libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplatePacTerm32.lo libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplateCompact32.lo libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplatePac32.lo libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplateUtf832.lo libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplateByte64.lo libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplateLz464.lo libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplatePacTerm64.lo libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplateCompact64.lo libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplatePac64.lo libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplateUtf864.lo libmaus2/suffixsort/bwtb3m/la-BwtMergeComputeSampledSA.lo -lz -lgmp -lnettle -lgpgme libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la -lz -inst-prefix-dir /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp) libtool: relink: powerpc64le-linux-gnu-g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc-cross/powerpc64le-linux-gnu/16/../../../../powerpc64le-linux-gnu/lib/../lib/crti.o /usr/lib/gcc-cross/powerpc64le-linux-gnu/16/crtbeginS.o libmaus2/.libs/la-StaticInitialization.o libmaus2/bitio/.libs/la-CompactArray.o libmaus2/rank/.libs/la-RankTable.o libmaus2/rank/.libs/la-log2table.o libmaus2/fastx/.libs/la-isFastQ.o libmaus2/wavelet/.libs/la-toWaveletTreeBits.o libmaus2/suffixsort/.libs/la-divsufsort.o libmaus2/digest/.libs/la-md5.o libmaus2/math/.libs/la-primes16.o libmaus2/util/.libs/la-OutputFileNameTools.o libmaus2/select/.libs/la-ESelectBase.o libmaus2/bambam/.libs/la-CigarStringParser.o libmaus2/fastx/.libs/la-Phred.o libmaus2/lz/.libs/la-SnappyCompress.o libmaus2/bambam/.libs/la-ReadEndsContainer.o libmaus2/bambam/.libs/la-ReadEnds.o libmaus2/huffman/.libs/la-IndexLoaderBase.o libmaus2/bambam/.libs/la-BamAlignmentDecoderBase.o libmaus2/bambam/.libs/la-StrCmpNum.o libmaus2/huffman/.libs/la-KvInitResult.o libmaus2/fm/.libs/la-MausFmToBwaConversion.o libmaus2/util/.libs/la-TempFileNameGenerator.o libmaus2/util/.libs/la-TempFileNameGeneratorState.o libmaus2/util/.libs/la-ArgInfo.o libmaus2/util/.libs/la-BitList.o libmaus2/util/.libs/la-VarBitList.o libmaus2/util/.libs/la-Concat.o libmaus2/util/.libs/la-ConcatRequest.o libmaus2/util/.libs/la-ConsoleColor.o libmaus2/util/.libs/la-DynamicLoading.o libmaus2/util/.libs/la-GetFileSize.o libmaus2/util/.libs/la-Histogram.o libmaus2/util/.libs/la-HistogramSet.o libmaus2/util/.libs/la-IncreasingList.o libmaus2/util/.libs/la-IntervalTree.o libmaus2/util/.libs/la-GenericIntervalTree.o libmaus2/util/.libs/la-LookupIntervalTree.o libmaus2/digest/.libs/la-md5_interface.o libmaus2/util/.libs/la-MemUsage.o libmaus2/util/.libs/la-nstat.o libmaus2/util/.libs/la-SaturatingCounter.o libmaus2/util/.libs/la-StringSerialisation.o libmaus2/util/.libs/la-SuccinctBorderArray.o libmaus2/util/.libs/la-Terminal.o libmaus2/util/.libs/la-OctetString.o libmaus2/util/.libs/la-Utf8String.o libmaus2/util/.libs/la-Utf8BlockIndexDecoder.o libmaus2/util/.libs/la-Utf8BlockIndex.o libmaus2/util/.libs/la-Utf8DecoderBuffer.o libmaus2/util/.libs/la-Utf8DecoderWrapper.o libmaus2/suffixtree/.libs/la-CompressedSuffixTree.o libmaus2/bambam/.libs/la-AlignmentValidity.o libmaus2/bambam/.libs/la-BamFlagBase.o libmaus2/bambam/.libs/la-ReadGroup.o libmaus2/bambam/.libs/la-DuplicationMetrics.o libmaus2/bambam/.libs/la-BamDefaultAdapters.o libmaus2/bambam/.libs/la-BamRange.o libmaus2/bambam/.libs/la-BamIndexBinChunk.o libmaus2/bambam/.libs/la-BamIndexLinearChunk.o libmaus2/huffman/.libs/la-HuffmanTree.o libmaus2/bambam/.libs/la-BamAlignmentDecoderInfo.o libmaus2/lz/.libs/la-Lz4Base.o libmaus2/lz/.libs/la-Lz4Compress.o libmaus2/lz/.libs/la-Lz4DecoderBuffer.o libmaus2/lz/.libs/la-lz4.o libmaus2/fm/.libs/la-BidirectionalIndexInterval.o libmaus2/fm/.libs/la-BidirectionalIndexIntervalSymbol.o libmaus2/gamma/.libs/la-SparseGammaGapFileIndexDecoderEntry.o libmaus2/fastx/.libs/la-FastALineParserLineInfo.o libmaus2/fastx/.libs/la-FastAMatchTable.o libmaus2/lcs/.libs/la-EditDistanceResult.o libmaus2/fastx/.libs/la-FastABgzfIndexEntry.o libmaus2/fastx/.libs/la-FastABgzfIndex.o libmaus2/fastx/.libs/la-FastAIndexEntry.o libmaus2/fastx/.libs/la-FastAIndex.o libmaus2/hashing/.libs/la-Crc32.o libmaus2/hashing/.libs/la-MurmurHash3.o libmaus2/lcs/.libs/la-LocalBaseConstants.o libmaus2/lcs/.libs/la-LocalEditDistanceResult.o libmaus2/bambam/.libs/la-BamHeaderParserStateBase.o libmaus2/bambam/.libs/la-GeneFlatFile.o libmaus2/bambam/.libs/la-GeneFlatFileEntry.o libmaus2/trie/.libs/la-SimpleTrie.o libmaus2/bambam/.libs/la-BamStreamingMarkDuplicatesSupport.o libmaus2/alignment/.libs/la-FactorMatchInfo.o libmaus2/alignment/.libs/la-KmerInfo.o libmaus2/bambam/.libs/la-SamInfoBase.o libmaus2/digest/.libs/la-SHA1.o libmaus2/digest/.libs/la-SHA2_224.o libmaus2/digest/.libs/la-SHA2_256.o libmaus2/digest/.libs/la-SHA2_384.o libmaus2/digest/.libs/la-SHA2_512.o libmaus2/digest/.libs/la-CRC32.o libmaus2/digest/.libs/la-CRC32C_Core.o libmaus2/digest/.libs/la-CRC32C.o libmaus2/digest/.libs/la-CRC32_Core.o libmaus2/bambam/parallel/.libs/la-ValidationFragment.o libmaus2/bambam/parallel/.libs/la-GenericInputControlStreamInfo.o libmaus2/fastx/.libs/la-NameInfoBase.o libmaus2/bambam/parallel/.libs/la-RefIdInterval.o libmaus2/fastx/.libs/la-RefPathToken.o libmaus2/fastx/.libs/la-RefPathTokenVector.o libmaus2/dazzler/db/.libs/la-FastaInfo.o libmaus2/dazzler/db/.libs/la-IndexBase.o libmaus2/dazzler/db/.libs/la-DatabaseFile.o libmaus2/dazzler/db/.libs/la-Read.o libmaus2/dazzler/align/.libs/la-Path.o libmaus2/dazzler/align/.libs/la-Overlap.o libmaus2/lcs/.libs/la-AlignmentStatistics.o libmaus2/fastx/.libs/la-SingleWordDNABitBuffer.o libmaus2/util/.libs/la-LongestIncreasingSubsequenceExtendedResult.o libmaus2/lcs/.libs/la-AlignerFactory.o libmaus2/lcs/.libs/la-BandedAlignerFactory.o libmaus2/aio/.libs/la-InputStreamInstance.o libmaus2/aio/.libs/la-OutputStreamInstance.o libmaus2/aio/.libs/la-OutputStreamFactoryContainer.o libmaus2/dazzler/align/.libs/la-TraceBlock.o libmaus2/dazzler/align/.libs/la-ApproximateRun.o libmaus2/suffixsort/.libs/la-BwtMergeBlockSortRequest.o libmaus2/dazzler/align/.libs/la-OverlapMeta.o libmaus2/dazzler/align/.libs/la-Tandem.o libmaus2/dazzler/align/.libs/la-TandemVector.o libmaus2/math/.libs/la-GmpInteger.o libmaus2/math/.libs/la-GmpFloat.o libmaus2/dazzler/align/.libs/la-TracePoint.o libmaus2/lz/.libs/la-XzDecoder.o libmaus2/util/.libs/la-ArgParser.o libmaus2/fastx/.libs/la-DNAIndexMetaDataSequence.o libmaus2/fastx/.libs/la-DNAIndexMetaData.o libmaus2/bambam/.libs/la-PileVectorElement.o libmaus2/bambam/.libs/la-PileQualityVectorElement.o libmaus2/digest/.libs/la-SHA3_256.o libmaus2/fastx/.libs/la-DNAIndexMetaDataBigBand.o libmaus2/fastx/.libs/la-DNAIndexMetaDataBigBandBiDir.o libmaus2/rank/.libs/la-DNARankBiDirRange.o libmaus2/lcs/.libs/la-NNPTraceElement.o libmaus2/lcs/.libs/la-NNPTraceContainer.o libmaus2/lcs/.libs/la-NNPAlignResult.o libmaus2/suffixsort/bwtb3m/.libs/la-MergeStrategyMergeGapRequest.o libmaus2/suffixsort/bwtb3m/.libs/la-BwtMergeSort.o libmaus2/suffixsort/bwtb3m/.libs/la-BwtComputeSSA.o libmaus2/fastx/.libs/la-FastAToCompact4BigBand.o libmaus2/suffixsort/bwtb3m/.libs/la-BwtMergeSortResult.o libmaus2/lz/.libs/la-ZlibInterface.o libmaus2/suffixsort/bwtb3m/.libs/la-BwtSelectSSA.o libmaus2/aio/.libs/la-FileRemoval.o libmaus2/rank/.libs/la-DNARankMEM.o libmaus2/lcs/.libs/la-ChainAddQueueElement.o libmaus2/lcs/.libs/la-Chain.o libmaus2/lcs/.libs/la-ChainNode.o libmaus2/lcs/.libs/la-ChainNodeInfo.o libmaus2/lcs/.libs/la-ChainRemoveQueueElement.o libmaus2/lcs/.libs/la-ChainSplayTreeNode.o libmaus2/timing/.libs/la-RealTimeClock.o libmaus2/aio/.libs/la-PosixFdOutputStreamFactory.o libmaus2/dazzler/align/.libs/la-OverlapHeader.o libmaus2/bambam/.libs/la-BamAlignment.o libmaus2/suffixsort/bwtb3m/.libs/la-MergeStrategyMergeInput.o libmaus2/aio/.libs/la-InputOutputStreamInstance.o libmaus2/dazzler/align/.libs/la-OverlapInfo.o libmaus2/dazzler/align/.libs/la-OverlapDataInterface.o libmaus2/util/.libs/la-PathTools.o libmaus2/aio/.libs/la-OFStreamOutputStreamFactory.o libmaus2/aio/.libs/la-PosixFdInput.o libmaus2/lz/.libs/la-BgzfDeflateHeaderFunctions.o libmaus2/lz/.libs/la-BgzfDeflateZStreamBase.o libmaus2/gtf/.libs/la-CDS.o libmaus2/gtf/.libs/la-Exon.o libmaus2/gtf/.libs/la-ExonInfo.o libmaus2/gtf/.libs/la-ExonInterval.o libmaus2/gtf/.libs/la-ExonSubInfo.o libmaus2/protein/.libs/la-Blosum62.o libmaus2/protein/.libs/la-CodonMapper.o libmaus2/bambam/.libs/la-ChecksumsFactory.o libmaus2/vcf/.libs/la-VCFSortEntry.o libmaus2/network/.libs/la-CurlInitObject.o libmaus2/network/.libs/la-CurlOutputBlock.o libmaus2/network/.libs/la-CurlResponseAcceptor.o libmaus2/network/.libs/la-HttpCurlResponseAcceptor.o libmaus2/network/.libs/la-FtpCurlResponseAcceptor.o libmaus2/network/.libs/la-CurlObject.o libmaus2/network/.libs/la-CurlObjectReader.o libmaus2/network/.libs/la-CurlObjectThreadCallable.o libmaus2/network/.libs/la-CurlInputStreamBuffer.o libmaus2/network/.libs/la-CurlInputStream.o libmaus2/network/.libs/la-GetHostName.o libmaus2/aio/.libs/la-SecrecyInputStreamFactory.o libmaus2/aio/.libs/la-SecrecyOutputStreamFactory.o libmaus2/bambam/.libs/la-Scram.o libmaus2/bambam/parallel/.libs/la-ScramCramEncoding.o libmaus2/parallel/threadpool/bgzf/.libs/la-BgzfDecompressContext.o libmaus2/parallel/threadpool/bgzf/.libs/la-BgzfCompressContext.o libmaus2/suffixsort/bwtb3m/.libs/la-BwtMergeIsaBase.o libmaus2/suffixsort/bwtb3m/.libs/la-BwtMergeIsaParallelBase.o libmaus2/suffixsort/bwtb3m/.libs/la-BwtMergeParallelGapFragMerge.o libmaus2/suffixsort/bwtb3m/.libs/la-BwtMergeSortTemplateByte32.o libmaus2/suffixsort/bwtb3m/.libs/la-BwtMergeSortTemplateLz432.o libmaus2/suffixsort/bwtb3m/.libs/la-BwtMergeSortTemplatePacTerm32.o libmaus2/suffixsort/bwtb3m/.libs/la-BwtMergeSortTemplateCompact32.o libmaus2/suffixsort/bwtb3m/.libs/la-BwtMergeSortTemplatePac32.o libmaus2/suffixsort/bwtb3m/.libs/la-BwtMergeSortTemplateUtf832.o libmaus2/suffixsort/bwtb3m/.libs/la-BwtMergeSortTemplateByte64.o libmaus2/suffixsort/bwtb3m/.libs/la-BwtMergeSortTemplateLz464.o libmaus2/suffixsort/bwtb3m/.libs/la-BwtMergeSortTemplatePacTerm64.o libmaus2/suffixsort/bwtb3m/.libs/la-BwtMergeSortTemplateCompact64.o libmaus2/suffixsort/bwtb3m/.libs/la-BwtMergeSortTemplatePac64.o libmaus2/suffixsort/bwtb3m/.libs/la-BwtMergeSortTemplateUtf864.o libmaus2/suffixsort/bwtb3m/.libs/la-BwtMergeComputeSampledSA.o -L/lib -lgmp -lnettle -lgpgme -L/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/powerpc64le-linux-gnu -L/usr/lib/powerpc64le-linux-gnu -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_demangle -lmaus2_arch -lz -L/usr/lib/gcc-cross/powerpc64le-linux-gnu/16 -L/usr/lib/gcc-cross/powerpc64le-linux-gnu/16/../../../../powerpc64le-linux-gnu/lib/../lib -L/lib/powerpc64le-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc-cross/powerpc64le-linux-gnu/16/../../../../powerpc64le-linux-gnu/lib -L/usr/lib -lstdc++ -lm -lgcc_s -latomic_asneeded -lc -lgcc_s /usr/lib/gcc-cross/powerpc64le-linux-gnu/16/crtendS.o /usr/lib/gcc-cross/powerpc64le-linux-gnu/16/../../../../powerpc64le-linux-gnu/lib/../lib/crtn.o -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-z -Wl,relro -Wl,-z -Wl,now -pthread -fopenmp -Wl,-soname -Wl,libmaus2.so.2 -o .libs/libmaus2.so.2.0.813 libtool: install: /usr/bin/install -c .libs/libmaus2.so.2.0.813T /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/powerpc64le-linux-gnu/libmaus2.so.2.0.813 libtool: install: (cd /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/powerpc64le-linux-gnu && { ln -s -f libmaus2.so.2.0.813 libmaus2.so.2 || { rm -f libmaus2.so.2 && ln -s libmaus2.so.2.0.813 libmaus2.so.2; }; }) libtool: install: (cd /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/powerpc64le-linux-gnu && { ln -s -f libmaus2.so.2.0.813 libmaus2.so || { rm -f libmaus2.so && ln -s libmaus2.so.2.0.813 libmaus2.so; }; }) libtool: install: /usr/bin/install -c .libs/libmaus2.lai /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/powerpc64le-linux-gnu/libmaus2.la libtool: warning: relinking 'libmaus2_simd_align_128.la' libtool: install: (cd /build/reproducible-path/libmaus2-2.0.813+ds/src; /bin/bash "/build/reproducible-path/libmaus2-2.0.813+ds/libtool" --tag CXX --mode=relink powerpc64le-linux-gnu-g++ -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -version-info 2:813:0 -Wl,-z,relro -Wl,-z,now -o libmaus2_simd_align_128.la -rpath /usr/lib/powerpc64le-linux-gnu libmaus2/lcs/simd_align_128_la-SimdX86GlobalAlignmentConstants128.lo libmaus2/lcs/simd_align_128_la-SimdX86BandedGlobalAlignmentX128_8.lo libmaus2/lcs/simd_align_128_la-SimdX86BandedGlobalAlignmentX128_16.lo libmaus2/lcs/simd_align_128_la-SimdX86GlobalAlignmentX128_8.lo libmaus2/lcs/simd_align_128_la-SimdX86GlobalAlignmentX128_16.lo libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la -lz -inst-prefix-dir /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp) libtool: relink: powerpc64le-linux-gnu-g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc-cross/powerpc64le-linux-gnu/16/../../../../powerpc64le-linux-gnu/lib/../lib/crti.o /usr/lib/gcc-cross/powerpc64le-linux-gnu/16/crtbeginS.o libmaus2/lcs/.libs/simd_align_128_la-SimdX86GlobalAlignmentConstants128.o libmaus2/lcs/.libs/simd_align_128_la-SimdX86BandedGlobalAlignmentX128_8.o libmaus2/lcs/.libs/simd_align_128_la-SimdX86BandedGlobalAlignmentX128_16.o libmaus2/lcs/.libs/simd_align_128_la-SimdX86GlobalAlignmentX128_8.o libmaus2/lcs/.libs/simd_align_128_la-SimdX86GlobalAlignmentX128_16.o -L/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/powerpc64le-linux-gnu -L/usr/lib/powerpc64le-linux-gnu -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_demangle -lmaus2_arch -lz -L/usr/lib/gcc-cross/powerpc64le-linux-gnu/16 -L/usr/lib/gcc-cross/powerpc64le-linux-gnu/16/../../../../powerpc64le-linux-gnu/lib/../lib -L/lib/powerpc64le-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc-cross/powerpc64le-linux-gnu/16/../../../../powerpc64le-linux-gnu/lib -L/lib -L/usr/lib -lstdc++ -lm -lgcc_s -latomic_asneeded -lc -lgcc_s /usr/lib/gcc-cross/powerpc64le-linux-gnu/16/crtendS.o /usr/lib/gcc-cross/powerpc64le-linux-gnu/16/../../../../powerpc64le-linux-gnu/lib/../lib/crtn.o -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-z -Wl,relro -Wl,-z -Wl,now -pthread -fopenmp -Wl,-soname -Wl,libmaus2_simd_align_128.so.2 -o .libs/libmaus2_simd_align_128.so.2.0.813 libtool: install: /usr/bin/install -c .libs/libmaus2_simd_align_128.so.2.0.813T /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/powerpc64le-linux-gnu/libmaus2_simd_align_128.so.2.0.813 libtool: install: (cd /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/powerpc64le-linux-gnu && { ln -s -f libmaus2_simd_align_128.so.2.0.813 libmaus2_simd_align_128.so.2 || { rm -f libmaus2_simd_align_128.so.2 && ln -s libmaus2_simd_align_128.so.2.0.813 libmaus2_simd_align_128.so.2; }; }) libtool: install: (cd /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/powerpc64le-linux-gnu && { ln -s -f libmaus2_simd_align_128.so.2.0.813 libmaus2_simd_align_128.so || { rm -f libmaus2_simd_align_128.so && ln -s libmaus2_simd_align_128.so.2.0.813 libmaus2_simd_align_128.so; }; }) libtool: install: /usr/bin/install -c .libs/libmaus2_simd_align_128.lai /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/powerpc64le-linux-gnu/libmaus2_simd_align_128.la libtool: warning: relinking 'libmaus2_simd_align_256.la' libtool: install: (cd /build/reproducible-path/libmaus2-2.0.813+ds/src; /bin/bash "/build/reproducible-path/libmaus2-2.0.813+ds/libtool" --tag CXX --mode=relink powerpc64le-linux-gnu-g++ -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -version-info 2:813:0 -Wl,-z,relro -Wl,-z,now -o libmaus2_simd_align_256.la -rpath /usr/lib/powerpc64le-linux-gnu libmaus2/lcs/simd_align_256_la-SimdX86GlobalAlignmentConstants256.lo libmaus2/lcs/simd_align_256_la-SimdX86BandedGlobalAlignmentY256_8.lo libmaus2/lcs/simd_align_256_la-SimdX86BandedGlobalAlignmentY256_16.lo libmaus2/lcs/simd_align_256_la-SimdX86BandedGlobalAlignmentScoreY256_16.lo libmaus2/lcs/simd_align_256_la-SimdX86GlobalAlignmentY256_8.lo libmaus2/lcs/simd_align_256_la-SimdX86GlobalAlignmentY256_16.lo libmaus2/lcs/simd_align_256_la-AlignmentOneAgainstManyAVX2.lo libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la -lz -inst-prefix-dir /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp) libtool: relink: powerpc64le-linux-gnu-g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc-cross/powerpc64le-linux-gnu/16/../../../../powerpc64le-linux-gnu/lib/../lib/crti.o /usr/lib/gcc-cross/powerpc64le-linux-gnu/16/crtbeginS.o libmaus2/lcs/.libs/simd_align_256_la-SimdX86GlobalAlignmentConstants256.o libmaus2/lcs/.libs/simd_align_256_la-SimdX86BandedGlobalAlignmentY256_8.o libmaus2/lcs/.libs/simd_align_256_la-SimdX86BandedGlobalAlignmentY256_16.o libmaus2/lcs/.libs/simd_align_256_la-SimdX86BandedGlobalAlignmentScoreY256_16.o libmaus2/lcs/.libs/simd_align_256_la-SimdX86GlobalAlignmentY256_8.o libmaus2/lcs/.libs/simd_align_256_la-SimdX86GlobalAlignmentY256_16.o libmaus2/lcs/.libs/simd_align_256_la-AlignmentOneAgainstManyAVX2.o -L/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/powerpc64le-linux-gnu -L/usr/lib/powerpc64le-linux-gnu -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_demangle -lmaus2_arch -lz -L/usr/lib/gcc-cross/powerpc64le-linux-gnu/16 -L/usr/lib/gcc-cross/powerpc64le-linux-gnu/16/../../../../powerpc64le-linux-gnu/lib/../lib -L/lib/powerpc64le-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc-cross/powerpc64le-linux-gnu/16/../../../../powerpc64le-linux-gnu/lib -L/lib -L/usr/lib -lstdc++ -lm -lgcc_s -latomic_asneeded -lc -lgcc_s /usr/lib/gcc-cross/powerpc64le-linux-gnu/16/crtendS.o /usr/lib/gcc-cross/powerpc64le-linux-gnu/16/../../../../powerpc64le-linux-gnu/lib/../lib/crtn.o -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-z -Wl,relro -Wl,-z -Wl,now -pthread -fopenmp -Wl,-soname -Wl,libmaus2_simd_align_256.so.2 -o .libs/libmaus2_simd_align_256.so.2.0.813 libtool: install: /usr/bin/install -c .libs/libmaus2_simd_align_256.so.2.0.813T /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/powerpc64le-linux-gnu/libmaus2_simd_align_256.so.2.0.813 libtool: install: (cd /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/powerpc64le-linux-gnu && { ln -s -f libmaus2_simd_align_256.so.2.0.813 libmaus2_simd_align_256.so.2 || { rm -f libmaus2_simd_align_256.so.2 && ln -s libmaus2_simd_align_256.so.2.0.813 libmaus2_simd_align_256.so.2; }; }) libtool: install: (cd /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/powerpc64le-linux-gnu && { ln -s -f libmaus2_simd_align_256.so.2.0.813 libmaus2_simd_align_256.so || { rm -f libmaus2_simd_align_256.so && ln -s libmaus2_simd_align_256.so.2.0.813 libmaus2_simd_align_256.so; }; }) libtool: install: /usr/bin/install -c .libs/libmaus2_simd_align_256.lai /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/powerpc64le-linux-gnu/libmaus2_simd_align_256.la libtool: install: /usr/bin/install -c .libs/libmaus2_arch.a /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/powerpc64le-linux-gnu/libmaus2_arch.a libtool: install: chmod 644 /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/powerpc64le-linux-gnu/libmaus2_arch.a libtool: install: powerpc64le-linux-gnu-ranlib /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/powerpc64le-linux-gnu/libmaus2_arch.a libtool: install: /usr/bin/install -c .libs/libmaus2_posix.a /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/powerpc64le-linux-gnu/libmaus2_posix.a libtool: install: chmod 644 /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/powerpc64le-linux-gnu/libmaus2_posix.a libtool: install: powerpc64le-linux-gnu-ranlib /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/powerpc64le-linux-gnu/libmaus2_posix.a libtool: install: /usr/bin/install -c .libs/libmaus2_demangle.a /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/powerpc64le-linux-gnu/libmaus2_demangle.a libtool: install: chmod 644 /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/powerpc64le-linux-gnu/libmaus2_demangle.a libtool: install: powerpc64le-linux-gnu-ranlib /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/powerpc64le-linux-gnu/libmaus2_demangle.a libtool: install: /usr/bin/install -c .libs/libmaus2_stacktrace.a /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/powerpc64le-linux-gnu/libmaus2_stacktrace.a libtool: install: chmod 644 /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/powerpc64le-linux-gnu/libmaus2_stacktrace.a libtool: install: powerpc64le-linux-gnu-ranlib /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/powerpc64le-linux-gnu/libmaus2_stacktrace.a libtool: install: /usr/bin/install -c .libs/libmaus2_exception.a /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/powerpc64le-linux-gnu/libmaus2_exception.a libtool: install: chmod 644 /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/powerpc64le-linux-gnu/libmaus2_exception.a libtool: install: powerpc64le-linux-gnu-ranlib /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/powerpc64le-linux-gnu/libmaus2_exception.a libtool: install: /usr/bin/install -c .libs/libmaus2_autoarray.a /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/powerpc64le-linux-gnu/libmaus2_autoarray.a libtool: install: chmod 644 /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/powerpc64le-linux-gnu/libmaus2_autoarray.a libtool: install: powerpc64le-linux-gnu-ranlib /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/powerpc64le-linux-gnu/libmaus2_autoarray.a libtool: install: /usr/bin/install -c .libs/libmaus2_parallel.a /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/powerpc64le-linux-gnu/libmaus2_parallel.a libtool: install: chmod 644 /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/powerpc64le-linux-gnu/libmaus2_parallel.a libtool: install: powerpc64le-linux-gnu-ranlib /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/powerpc64le-linux-gnu/libmaus2_parallel.a libtool: install: /usr/bin/install -c .libs/libmaus2.a /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/powerpc64le-linux-gnu/libmaus2.a libtool: install: chmod 644 /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/powerpc64le-linux-gnu/libmaus2.a libtool: install: powerpc64le-linux-gnu-ranlib /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/powerpc64le-linux-gnu/libmaus2.a libtool: install: /usr/bin/install -c .libs/libmaus2_simd_align_128.a /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/powerpc64le-linux-gnu/libmaus2_simd_align_128.a libtool: install: chmod 644 /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/powerpc64le-linux-gnu/libmaus2_simd_align_128.a libtool: install: powerpc64le-linux-gnu-ranlib /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/powerpc64le-linux-gnu/libmaus2_simd_align_128.a libtool: install: /usr/bin/install -c .libs/libmaus2_simd_align_256.a /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/powerpc64le-linux-gnu/libmaus2_simd_align_256.a libtool: install: chmod 644 /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/powerpc64le-linux-gnu/libmaus2_simd_align_256.a libtool: install: powerpc64le-linux-gnu-ranlib /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/powerpc64le-linux-gnu/libmaus2_simd_align_256.a libtool: warning: remember to run 'libtool --finish /usr/lib/powerpc64le-linux-gnu' /usr/bin/mkdir -p '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/' /usr/bin/install -c -m 644 libmaus2/LibMausConfig.hpp libmaus2/LibMausWindows.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/' /usr/bin/mkdir -p '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/aio' /usr/bin/install -c -m 644 libmaus2/aio/BufferedOutput.hpp libmaus2/aio/FileFragment.hpp libmaus2/aio/SynchronousFastReaderBase.hpp libmaus2/aio/SynchronousGenericInput.hpp libmaus2/aio/ReorderConcatGenericInput.hpp libmaus2/aio/GetLength.hpp libmaus2/aio/CompactDecoder4.hpp libmaus2/aio/CompactEncoder4.hpp libmaus2/aio/WriteCompactArray.hpp libmaus2/aio/SynchronousGenericOutput.hpp libmaus2/aio/PutOutputIterator.hpp libmaus2/aio/CircularBuffer.hpp libmaus2/aio/CircularWrapper.hpp libmaus2/aio/IStreamWrapper.hpp libmaus2/aio/Buffer.hpp libmaus2/aio/SingleFileFragmentMerge.hpp libmaus2/aio/PosixFdInput.hpp libmaus2/aio/PosixFdInputWrapper.hpp libmaus2/aio/PosixFdInputStream.hpp libmaus2/aio/PosixFdOutputStreamBuffer.hpp libmaus2/aio/PosixFdOutputStream.hpp libmaus2/aio/PosixFdInputStreamBuffer.hpp libmaus2/aio/LineSplittingPosixFdOutputStreamBuffer.hpp libmaus2/aio/LineSplittingPosixFdOutputStream.hpp libmaus2/aio/NamedTemporaryFile.hpp libmaus2/aio/NamedTemporaryFileTypeInfo.hpp libmaus2/aio/NamedTemporaryFileAllocator.hpp libmaus2/aio/InputStreamWrapper.hpp libmaus2/aio/InputStream.hpp libmaus2/aio/InputStreamFactory.hpp libmaus2/aio/PosixFdInputStreamFactory.hpp libmaus2/aio/InputStreamFactoryContainer.hpp libmaus2/aio/OutputStreamWrapper.hpp libmaus2/aio/OutputStream.hpp libmaus2/aio/OutputStreamFactory.hpp libmaus2/aio/OutputStreamFactoryContainer.hpp libmaus2/aio/PosixFdOutputStreamFactory.hpp libmaus2/aio/InputOutputStreamFactoryContainer.hpp libmaus2/aio/InputOutputStreamFactory.hpp libmaus2/aio/InputOutputStream.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/aio' /usr/bin/install -c -m 644 libmaus2/aio/FStreamInputOutputStreamFactory.hpp libmaus2/aio/IFStreamInputStreamFactory.hpp libmaus2/aio/OFStreamOutputStreamFactory.hpp libmaus2/aio/InputOutputStreamWrapper.hpp libmaus2/aio/PosixFdInputOutputStreamBuffer.hpp libmaus2/aio/PosixFdInputOutputStream.hpp libmaus2/aio/PosixFdInputOutputStreamFactory.hpp libmaus2/aio/MemoryFileAdapter.hpp libmaus2/aio/MemoryFileContainer.hpp libmaus2/aio/MemoryFile.hpp libmaus2/aio/MemoryInputOutputStreamBuffer.hpp libmaus2/aio/MemoryInputOutputStreamFactory.hpp libmaus2/aio/MemoryInputOutputStream.hpp libmaus2/aio/MemoryInputStreamBuffer.hpp libmaus2/aio/MemoryInputStreamFactory.hpp libmaus2/aio/MemoryInputStream.hpp libmaus2/aio/MemoryOutputStreamBuffer.hpp libmaus2/aio/MemoryOutputStreamFactory.hpp libmaus2/aio/MemoryOutputStream.hpp libmaus2/aio/FileRemoval.hpp libmaus2/aio/InputStreamPointerWrapper.hpp libmaus2/aio/InputStreamInstance.hpp libmaus2/aio/InputStreamInstanceAtOffset.hpp libmaus2/aio/OutputStreamPointerWrapper.hpp libmaus2/aio/OutputStreamInstance.hpp libmaus2/aio/ConcatInputStreamBuffer.hpp libmaus2/aio/ConcatInputStream.hpp libmaus2/aio/SplitWriter.hpp libmaus2/aio/ArrayInputStreamBuffer.hpp libmaus2/aio/ArrayInputStream.hpp libmaus2/aio/ArrayFile.hpp libmaus2/aio/ArrayFileSet.hpp libmaus2/aio/StreamLock.hpp libmaus2/aio/ArrayFileContainer.hpp libmaus2/aio/ArrayInputStreamFactory.hpp libmaus2/aio/PairFileDecoder.hpp libmaus2/aio/SizeMonitorThread.hpp libmaus2/aio/DebugLineOutputStreamBuffer.hpp libmaus2/aio/DebugLineOutputStream.hpp libmaus2/aio/TempFileArray.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/aio' /usr/bin/install -c -m 644 libmaus2/aio/SerialisedPeeker.hpp libmaus2/aio/GenericPeeker.hpp libmaus2/aio/InputOutputStreamPointerWrapper.hpp libmaus2/aio/InputOutputStreamInstance.hpp libmaus2/aio/InputStreamObject.hpp libmaus2/aio/InputStreamObjectTypeInfo.hpp libmaus2/aio/InputStreamObjectAllocator.hpp libmaus2/aio/OutputStreamInstanceArray.hpp libmaus2/aio/MemoryBackedOutputStreamBuffer.hpp libmaus2/aio/MemoryBackedOutputStream.hpp libmaus2/aio/SkipConcatInputStream.hpp libmaus2/aio/SkipConcatInputStreamBuffer.hpp libmaus2/aio/CountOutputStreamBuffer.hpp libmaus2/aio/CountOutputStream.hpp libmaus2/aio/CharArrayInputStreamBuffer.hpp libmaus2/aio/CharArrayInputStream.hpp libmaus2/aio/CharArrayOutputStreamBuffer.hpp libmaus2/aio/CharArrayOutputStream.hpp libmaus2/aio/SecrecyInputStreamFactory.hpp libmaus2/aio/SecrecyOutputStreamFactory.hpp libmaus2/aio/SecrecyCache.hpp libmaus2/aio/URLObject.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/aio' /usr/bin/mkdir -p '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/alignment' /usr/bin/install -c -m 644 libmaus2/alignment/KmerTuple.hpp libmaus2/alignment/FactorMatchInfo.hpp libmaus2/alignment/KmerInfo.hpp libmaus2/alignment/FactorMatchInfoPosComparator.hpp libmaus2/alignment/FMIIntervalComparator.hpp libmaus2/alignment/BamLineInfo.hpp libmaus2/alignment/SimpleLocalAligner.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/alignment' /usr/bin/mkdir -p '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/arch' /usr/bin/install -c -m 644 libmaus2/arch/I386Features.hpp libmaus2/arch/CacheLineSize.hpp libmaus2/arch/PageSize.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/arch' /usr/bin/mkdir -p '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/autoarray/' /usr/bin/install -c -m 644 libmaus2/autoarray/AutoArray.hpp libmaus2/autoarray/AutoArray2d.hpp libmaus2/autoarray/AutoArrayMultiMap.hpp libmaus2/autoarray/AutoArrayAllocType.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/autoarray/' /usr/bin/mkdir -p '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/avl' /usr/bin/install -c -m 644 libmaus2/avl/AtomicAVLSet.hpp libmaus2/avl/AtomicAVLMap.hpp libmaus2/avl/AtomicAVLPtrValueMap.hpp libmaus2/avl/AVLSet.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/avl' /usr/bin/mkdir -p '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/bambam/' /usr/bin/install -c -m 644 libmaus2/bambam/DecoderBase.hpp libmaus2/bambam/Chromosome.hpp libmaus2/bambam/BamAlignmentDecoderBase.hpp libmaus2/bambam/BamFormatAuxiliary.hpp libmaus2/bambam/EncoderBase.hpp libmaus2/bambam/BamHeader.hpp libmaus2/bambam/BamAlignment.hpp libmaus2/bambam/BamDecoder.hpp libmaus2/bambam/BamAlignmentComparator.hpp libmaus2/bambam/MergeQueueElement.hpp libmaus2/bambam/CigarOperation.hpp libmaus2/bambam/CigarStringParser.hpp libmaus2/bambam/BamSeqEncodeTable.hpp libmaus2/bambam/BamAlignmentEncoderBase.hpp libmaus2/bambam/BamFlagBase.hpp libmaus2/bambam/BamWriter.hpp libmaus2/bambam/HeaderLine.hpp libmaus2/bambam/ProgramHeaderLineSet.hpp libmaus2/bambam/ReadEnds.hpp libmaus2/bambam/ReadEndsHeapPairComparator.hpp libmaus2/bambam/CompactReadEndsBase.hpp libmaus2/bambam/CompactReadEndsComparator.hpp libmaus2/bambam/SortedFragDecoder.hpp libmaus2/bambam/ReadEndsContainer.hpp libmaus2/bambam/DuplicationMetrics.hpp libmaus2/bambam/OpticalComparator.hpp libmaus2/bambam/BamAlignmentHeapComparator.hpp libmaus2/bambam/BamAlignmentNameComparator.hpp libmaus2/bambam/BamAlignmentNameLexicographicComparator.hpp libmaus2/bambam/BamAlignmentNameHIComparator.hpp libmaus2/bambam/BamAlignmentPosComparator.hpp libmaus2/bambam/BamAlignmentTagComparator.hpp libmaus2/bambam/BamAlignmentTagOnlyComparator.hpp libmaus2/bambam/BamEntryContainer.hpp libmaus2/bambam/Scram.h libmaus2/bambam/AlignmentValidity.hpp libmaus2/bambam/ScramDecoder.hpp libmaus2/bambam/ScramEncoder.hpp libmaus2/bambam/SnappyAlignmentMergeInput.hpp libmaus2/bambam/BamAlignmentPrinter.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/bambam/' /usr/bin/install -c -m 644 libmaus2/bambam/BamAlignmentSortingCircularHashEntryOverflow.hpp libmaus2/bambam/CircularHashCollatingBamDecoder.hpp libmaus2/bambam/BamToFastqOutputFileSet.hpp libmaus2/bambam/BamAlignmentDecoder.hpp libmaus2/bambam/CollatingBamDecoderAlignmentInputCallback.hpp libmaus2/bambam/ReadGroup.hpp libmaus2/bambam/BamAuxFilterVector.hpp libmaus2/bambam/BamDefaultAdapters.hpp libmaus2/bambam/AdapterOffsetStrand.hpp libmaus2/bambam/AdapterFilter.hpp libmaus2/bambam/BamIndexBin.hpp libmaus2/bambam/BamIndexLinear.hpp libmaus2/bambam/BamIndexRef.hpp libmaus2/bambam/BamIndex.hpp libmaus2/bambam/BamRange.hpp libmaus2/bambam/BamRangeParser.hpp libmaus2/bambam/BamRangeDecoder.hpp libmaus2/bambam/BamParallelRewrite.hpp libmaus2/bambam/BamAlignmentExpungeCallback.hpp libmaus2/bambam/StrCmpNum.hpp libmaus2/bambam/BamCatHeader.hpp libmaus2/bambam/BamCat.hpp libmaus2/bambam/BamMergeCoordinate.hpp libmaus2/bambam/BamMergeTemplate.hpp libmaus2/bambam/BamMergeQueryName.hpp libmaus2/bambam/BamIndexBinChunk.hpp libmaus2/bambam/BamIndexLinearChunk.hpp libmaus2/bambam/BamIndexGenerator.hpp libmaus2/bambam/BgzfDeflateOutputCallbackBamIndex.hpp libmaus2/bambam/BamAlignmentInputCallbackBam.hpp libmaus2/bambam/BamAlignmentInputCallbackSnappy.hpp libmaus2/bambam/BamHeaderUpdate.hpp libmaus2/bambam/DupSetCallback.hpp libmaus2/bambam/DupSetCallbackSet.hpp libmaus2/bambam/DupSetCallbackStream.hpp libmaus2/bambam/DupSetCallbackVector.hpp libmaus2/bambam/BamAlignmentListNode.hpp libmaus2/bambam/BamAlignmentPairListNode.hpp libmaus2/bambam/ReadEndsListNode.hpp libmaus2/bambam/BamAlignmentFreeList.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/bambam/' /usr/bin/install -c -m 644 libmaus2/bambam/BamAlignmentPairFreeList.hpp libmaus2/bambam/ReadEndsFreeList.hpp libmaus2/bambam/DupMarkBase.hpp libmaus2/bambam/BamAlignmentSnappyInput.hpp libmaus2/bambam/BamAlignmentInputPositionUpdateCallback.hpp libmaus2/bambam/BamAlignmentInputPositionCallbackNull.hpp libmaus2/bambam/BamBlockWriterBase.hpp libmaus2/bambam/BamBlockWriterBaseFactory.hpp libmaus2/bambam/BamAlignmentDecoderInfo.hpp libmaus2/bambam/BamAlignmentDecoderFactory.hpp libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp libmaus2/bambam/BamIndexMetaInfo.hpp libmaus2/bambam/MdStringComputationContext.hpp libmaus2/bambam/BamAlignmentFilter.hpp libmaus2/bambam/BamAlignmentReadGroupFilter.hpp libmaus2/bambam/MdNmRecalculation.hpp libmaus2/bambam/CramRange.hpp libmaus2/bambam/ChromosomeVectorMerge.hpp libmaus2/bambam/BamHeaderLowMem.hpp libmaus2/bambam/GeneFlatFile.hpp libmaus2/bambam/GeneFlatFileEntry.hpp libmaus2/bambam/BamStreamingMarkDuplicatesSupport.hpp libmaus2/bambam/BamStreamingMarkDuplicates.hpp libmaus2/bambam/BamHeaderParserStateBase.hpp libmaus2/bambam/BamHeaderParserState.hpp libmaus2/bambam/BamAlignmentReg2Bin.hpp libmaus2/bambam/SamInfoBase.hpp libmaus2/bambam/SamInfo.hpp libmaus2/bambam/SamPrintableTable.hpp libmaus2/bambam/SamZPrintableTable.hpp libmaus2/bambam/SamDecoder.hpp libmaus2/bambam/SamDecoderWrapper.hpp libmaus2/bambam/BamAlignmentFixedSizeData.hpp libmaus2/bambam/BamAuxSortingBufferEntry.hpp libmaus2/bambam/BamAuxSortingBuffer.hpp libmaus2/bambam/ReadEndsContainerBase.hpp libmaus2/bambam/ReadEndsBlockDecoderBase.hpp libmaus2/bambam/ReadEndsBlockDecoderBaseCollection.hpp libmaus2/bambam/ReadEndsStreamDecoderBase.hpp libmaus2/bambam/ReadEndsStreamDecoderFileBase.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/bambam/' /usr/bin/install -c -m 644 libmaus2/bambam/ReadEndsStreamDecoder.hpp libmaus2/bambam/ReadEndsBasePointerComparator.hpp libmaus2/bambam/ReadEndsBase.hpp libmaus2/bambam/ReadEndsBaseLongHashAttributeComparator.hpp libmaus2/bambam/ReadEndsBaseShortHashAttributeComparator.hpp libmaus2/bambam/ScramInputContainer.hpp libmaus2/bambam/SamEncoder.hpp libmaus2/bambam/ReadEndsBlockDecoderBaseCollectionInfoBase.hpp libmaus2/bambam/ReadEndsBlockDecoderBaseCollectionInfo.hpp libmaus2/bambam/ReadEndsBlockIndexSet.hpp libmaus2/bambam/DupSetCallbackSharedVector.hpp libmaus2/bambam/SamInfoAllocator.hpp libmaus2/bambam/SamInfoTypeInfo.hpp libmaus2/bambam/RgInfo.hpp libmaus2/bambam/SeqChksumPrimeNumbers.hpp libmaus2/bambam/SeqChksumUpdateContext.hpp libmaus2/bambam/ChecksumsInterface.hpp libmaus2/bambam/ChecksumsFactory.hpp libmaus2/bambam/ChecksumsInterfaceAllocator.hpp libmaus2/bambam/ChecksumsInterfaceTypeInfo.hpp libmaus2/bambam/StrCmpNumRecode.hpp libmaus2/bambam/PileVectorElement.hpp libmaus2/bambam/PileQualityVectorElement.hpp libmaus2/bambam/CigarStringReader.hpp libmaus2/bambam/BamAlignmentHashComparator.hpp libmaus2/bambam/CigarRunLengthDecoder.hpp libmaus2/bambam/CigarDecoder.hpp libmaus2/bambam/BamNumericalIndexGenerator.hpp libmaus2/bambam/BamNumericalIndexDecoder.hpp libmaus2/bambam/BamNumericalIndexBase.hpp libmaus2/bambam/BamPeeker.hpp libmaus2/bambam/BamRawPeeker.hpp libmaus2/bambam/OptName.hpp libmaus2/bambam/OptNameReader.hpp libmaus2/bambam/BamAccessor.hpp libmaus2/bambam/BamRawDecoder.hpp libmaus2/bambam/BamNumExtractor.hpp libmaus2/bambam/BgzfDeflateOutputCallbackBamNumericalIndex.hpp libmaus2/bambam/BamHeaderReadGroupInterface.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/bambam/' /usr/bin/mkdir -p '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/bambam/parallel/' /usr/bin/install -c -m 644 libmaus2/bambam/parallel/AddPendingCompressBufferWriteInterface.hpp libmaus2/bambam/parallel/AddWritePendingBgzfBlockInterface.hpp libmaus2/bambam/parallel/AlignmentBlockCompressPackage.hpp libmaus2/bambam/parallel/AlignmentBlockCompressPackageReturnInterface.hpp libmaus2/bambam/parallel/AlignmentBufferAllocator.hpp libmaus2/bambam/parallel/AlignmentBufferHeapComparator.hpp libmaus2/bambam/parallel/AlignmentBuffer.hpp libmaus2/bambam/parallel/AlignmentBufferReinsertInterface.hpp libmaus2/bambam/parallel/AlignmentBufferReturnInterface.hpp libmaus2/bambam/parallel/AlignmentBufferTypeInfo.hpp libmaus2/bambam/parallel/AlignmentRewriteBufferAddPendingInterface.hpp libmaus2/bambam/parallel/AlignmentRewriteBufferAllocator.hpp libmaus2/bambam/parallel/AlignmentRewriteBufferCoordinateComparator.hpp libmaus2/bambam/parallel/AlignmentRewriteBuffer.hpp libmaus2/bambam/parallel/AlignmentRewriteBufferPosComparator.hpp libmaus2/bambam/parallel/AlignmentRewriteBufferReinsertForFillingInterface.hpp libmaus2/bambam/parallel/AlignmentRewritePosMergeSortPackage.hpp libmaus2/bambam/parallel/AlignmentRewritePosSortBaseSortPackage.hpp libmaus2/bambam/parallel/AlignmentRewritePosSortContextBaseBlockSortedInterface.hpp libmaus2/bambam/parallel/AlignmentRewritePosSortContext.hpp libmaus2/bambam/parallel/AlignmentRewritePosSortContextMergePackageFinished.hpp libmaus2/bambam/parallel/BaseMergeSortWorkPackageReturnInterface.hpp libmaus2/bambam/parallel/BaseSortWorkPackageDispatcher.hpp libmaus2/bambam/parallel/BaseSortWorkPackageReturnInterface.hpp libmaus2/bambam/parallel/BgzfInflateZStreamBaseGetInterface.hpp libmaus2/bambam/parallel/BgzfInflateZStreamBaseReturnInterface.hpp libmaus2/bambam/parallel/BgzfLinearMemCompressWorkPackageDispatcher.hpp libmaus2/bambam/parallel/BgzfLinearMemCompressWorkPackage.hpp libmaus2/bambam/parallel/BgzfLinearMemCompressWorkPackageReturnInterface.hpp libmaus2/bambam/parallel/BgzfOutputBlockWrittenInterface.hpp libmaus2/bambam/parallel/BlockCompressPackageDispatcher.hpp libmaus2/bambam/parallel/CompressBufferAllocator.hpp libmaus2/bambam/parallel/CompressBufferHeapComparator.hpp libmaus2/bambam/parallel/CompressBuffer.hpp libmaus2/bambam/parallel/CompressionPendingElement.hpp libmaus2/bambam/parallel/ControlInputInfo.hpp libmaus2/bambam/parallel/DecompressBlocksWorkPackageDispatcher.hpp libmaus2/bambam/parallel/DecompressBlocksWorkPackage.hpp libmaus2/bambam/parallel/DecompressBlocksWorkPackageReturnInterface.hpp libmaus2/bambam/parallel/DecompressBlockWorkPackageDispatcher.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/bambam/parallel/' /usr/bin/install -c -m 644 libmaus2/bambam/parallel/DecompressBlockWorkPackage.hpp libmaus2/bambam/parallel/DecompressBlockWorkPackageReturnInterface.hpp libmaus2/bambam/parallel/DecompressedBlockAddPendingInterface.hpp libmaus2/bambam/parallel/DecompressedBlockAllocator.hpp libmaus2/bambam/parallel/DecompressedBlock.hpp libmaus2/bambam/parallel/DecompressedBlockReturnInterface.hpp libmaus2/bambam/parallel/DecompressedBlockTypeInfo.hpp libmaus2/bambam/parallel/DecompressedPendingObjectHeapComparator.hpp libmaus2/bambam/parallel/DecompressedPendingObject.hpp libmaus2/bambam/parallel/FragmentAlignmentBufferAllocator.hpp libmaus2/bambam/parallel/FragmentAlignmentBufferBaseSortPackage.hpp libmaus2/bambam/parallel/FragmentAlignmentBufferFragment.hpp libmaus2/bambam/parallel/FragmentAlignmentBufferHeapComparator.hpp libmaus2/bambam/parallel/FragmentAlignmentBuffer.hpp libmaus2/bambam/parallel/FragmentAlignmentBufferMergeSortPackage.hpp libmaus2/bambam/parallel/FragmentAlignmentBufferPointerTypeSwitchHelper.hpp libmaus2/bambam/parallel/FragmentAlignmentBufferPointerTypeSwitch.hpp libmaus2/bambam/parallel/FragmentAlignmentBufferRewriteFragmentCompleteInterface.hpp libmaus2/bambam/parallel/FragmentAlignmentBufferRewriteWorkPackageDispatcher.hpp libmaus2/bambam/parallel/FragmentAlignmentBufferRewriteWorkPackage.hpp libmaus2/bambam/parallel/FragmentAlignmentBufferRewriteWorkPackageReturnInterface.hpp libmaus2/bambam/parallel/FragmentAlignmentBufferSortContextBaseBlockSortedInterface.hpp libmaus2/bambam/parallel/FragmentAlignmentBufferSortContext.hpp libmaus2/bambam/parallel/FragmentAlignmentBufferSortContextMergePackageFinished.hpp libmaus2/bambam/parallel/FragmentAlignmentBufferSortFinishedInterface.hpp libmaus2/bambam/parallel/FragmentAlignmentBufferTypeInfo.hpp libmaus2/bambam/parallel/GetBgzfDeflateZStreamBaseInterface.hpp libmaus2/bambam/parallel/InputBlockAddPendingInterface.hpp libmaus2/bambam/parallel/InputBlockAllocator.hpp libmaus2/bambam/parallel/InputBlock.hpp libmaus2/bambam/parallel/InputBlockReturnInterface.hpp libmaus2/bambam/parallel/InputBlockTypeInfo.hpp libmaus2/bambam/parallel/InputBlockWorkPackageDispatcher.hpp libmaus2/bambam/parallel/InputBlockWorkPackage.hpp libmaus2/bambam/parallel/InputBlockWorkPackageReturnInterface.hpp libmaus2/bambam/parallel/MergeSortWorkPackageDispatcher.hpp libmaus2/bambam/parallel/ParseBlockWorkPackageDispatcher.hpp libmaus2/bambam/parallel/ParseBlockWorkPackage.hpp libmaus2/bambam/parallel/ParsedBlockAddPendingInterface.hpp libmaus2/bambam/parallel/ParsedBlockStallInterface.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/bambam/parallel/' /usr/bin/install -c -m 644 libmaus2/bambam/parallel/ParseInfoHeaderCompleteCallback.hpp libmaus2/bambam/parallel/ParseInfo.hpp libmaus2/bambam/parallel/ParsePackageReturnInterface.hpp libmaus2/bambam/parallel/PushBackSpace.hpp libmaus2/bambam/parallel/PutBgzfDeflateZStreamBaseInterface.hpp libmaus2/bambam/parallel/RequeReadInterface.hpp libmaus2/bambam/parallel/ReturnBgzfOutputBufferInterface.hpp libmaus2/bambam/parallel/ReturnCompressionPendingElementInterface.hpp libmaus2/bambam/parallel/ReturnRewriteBufferInterface.hpp libmaus2/bambam/parallel/RewriteBlockWorkPackageDispatcher.hpp libmaus2/bambam/parallel/RewriteBlockWorkPackage.hpp libmaus2/bambam/parallel/RewritePackageReturnInterface.hpp libmaus2/bambam/parallel/SmallLinearBlockCompressionPendingObjectFinishedInterface.hpp libmaus2/bambam/parallel/SmallLinearBlockCompressionPendingObjectHeapComparator.hpp libmaus2/bambam/parallel/SmallLinearBlockCompressionPendingObject.hpp libmaus2/bambam/parallel/SortControl.hpp libmaus2/bambam/parallel/SortFinishedInterface.hpp libmaus2/bambam/parallel/ValidateBlockAddPendingInterface.hpp libmaus2/bambam/parallel/ValidateBlockFragmentAddPendingInterface.hpp libmaus2/bambam/parallel/ValidateBlockFragmentPackageReturnInterface.hpp libmaus2/bambam/parallel/ValidateBlockFragmentWorkPackageDispatcher.hpp libmaus2/bambam/parallel/ValidateBlockFragmentWorkPackage.hpp libmaus2/bambam/parallel/ValidateBlockWorkPackageDispatcher.hpp libmaus2/bambam/parallel/ValidateBlockWorkPackage.hpp libmaus2/bambam/parallel/ValidatePackageReturnInterface.hpp libmaus2/bambam/parallel/ValidationFragment.hpp libmaus2/bambam/parallel/WriteBlockWorkPackageDispatcher.hpp libmaus2/bambam/parallel/WriteBlockWorkPackage.hpp libmaus2/bambam/parallel/WriteBlockWorkPackageReturnInterface.hpp libmaus2/bambam/parallel/WritePendingObjectHeapComparator.hpp libmaus2/bambam/parallel/WritePendingObject.hpp libmaus2/bambam/parallel/FragmentAlignmentBufferBaseSortWorkPackageDispatcher.hpp libmaus2/bambam/parallel/FragmentAlignmentBufferReorderWorkPackage.hpp libmaus2/bambam/parallel/FragmentAlignmentBufferReorderWorkPackageDispatcher.hpp libmaus2/bambam/parallel/FragmentAlignmentBufferReorderWorkPackageReturnInterface.hpp libmaus2/bambam/parallel/FragmentAlignmentBufferReorderWorkPackageFinishedInterface.hpp libmaus2/bambam/parallel/FragmentAlignmentBufferNameComparator.hpp libmaus2/bambam/parallel/FragmentAlignmentBufferRewriteUpdateInterval.hpp libmaus2/bambam/parallel/FragmentAlignmentBufferRewriteReadEndsWorkPackageDispatcher.hpp libmaus2/bambam/parallel/FragmentAlignmentBufferRewriteReadEndsWorkPackage.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/bambam/parallel/' /usr/bin/install -c -m 644 libmaus2/bambam/parallel/FragmentAlignmentBufferRewriteReadEndsWorkPackageReturnInterface.hpp libmaus2/bambam/parallel/ReadEndsContainerAllocator.hpp libmaus2/bambam/parallel/ReadEndsContainerTypeInfo.hpp libmaus2/bambam/parallel/ReadEndsContainerFreeListInterface.hpp libmaus2/bambam/parallel/AddDuplicationMetricsInterface.hpp libmaus2/bambam/parallel/PairReadEndsContainerFlushWorkPackage.hpp libmaus2/bambam/parallel/FragReadEndsContainerFlushWorkPackage.hpp libmaus2/bambam/parallel/FragReadEndsContainerFlushWorkPackageReturnInterface.hpp libmaus2/bambam/parallel/FragReadEndsContainerFlushFinishedInterface.hpp libmaus2/bambam/parallel/FragReadEndsContainerFlushWorkPackageDispatcher.hpp libmaus2/bambam/parallel/PairReadEndsContainerFlushWorkPackageReturnInterface.hpp libmaus2/bambam/parallel/PairReadEndsContainerFlushFinishedInterface.hpp libmaus2/bambam/parallel/ReadEndsMergeRequest.hpp libmaus2/bambam/parallel/FragReadEndsMergeWorkPackage.hpp libmaus2/bambam/parallel/FragReadEndsMergeWorkPackageReturnInterface.hpp libmaus2/bambam/parallel/FragReadEndsMergeWorkPackageFinishedInterface.hpp libmaus2/bambam/parallel/FragReadEndsMergeWorkPackageDispatcher.hpp libmaus2/bambam/parallel/PairReadEndsMergeWorkPackage.hpp libmaus2/bambam/parallel/PairReadEndsMergeWorkPackageReturnInterface.hpp libmaus2/bambam/parallel/PairReadEndsMergeWorkPackageFinishedInterface.hpp libmaus2/bambam/parallel/PairReadEndsMergeWorkPackageDispatcher.hpp libmaus2/bambam/parallel/MemInputBlock.hpp libmaus2/bambam/parallel/GenericInputBamParseObject.hpp libmaus2/bambam/parallel/GenericInputBamParseWorkPackageBlockParsedInterface.hpp libmaus2/bambam/parallel/GenericInputBamParseWorkPackageDispatcher.hpp libmaus2/bambam/parallel/GenericInputBamParseWorkPackage.hpp libmaus2/bambam/parallel/GenericInputBamParseWorkPackageReturnInterface.hpp libmaus2/bambam/parallel/GenericInputBase.hpp libmaus2/bambam/parallel/GenericInputBgzfDecompressionWorkPackageDecompressedBlockReturnInterface.hpp libmaus2/bambam/parallel/GenericInputBgzfDecompressionWorkPackageDispatcher.hpp libmaus2/bambam/parallel/GenericInputBgzfDecompressionWorkPackage.hpp libmaus2/bambam/parallel/GenericInputBgzfDecompressionWorkPackageMemInputBlockReturnInterface.hpp libmaus2/bambam/parallel/GenericInputBgzfDecompressionWorkPackageReturnInterface.hpp libmaus2/bambam/parallel/GenericInputBgzfDecompressionWorkSubBlockDecompressionFinishedInterface.hpp libmaus2/bambam/parallel/GenericInputBlock.hpp libmaus2/bambam/parallel/GenericInputControlMergeBlockFinishedInterface.hpp libmaus2/bambam/parallel/GenericInputControlMergeHeapEntry.hpp libmaus2/bambam/parallel/GenericInputControlMergeRequeue.hpp libmaus2/bambam/parallel/GenericInputControlReadAddPendingInterface.hpp libmaus2/bambam/parallel/GenericInputControlReadWorkPackageDispatcher.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/bambam/parallel/' /usr/bin/install -c -m 644 libmaus2/bambam/parallel/GenericInputControlReadWorkPackage.hpp libmaus2/bambam/parallel/GenericInputControlReadWorkPackageReturnInterface.hpp libmaus2/bambam/parallel/GenericInputControlSetMergeStallSlotInterface.hpp libmaus2/bambam/parallel/GenericInputControlStreamInfo.hpp libmaus2/bambam/parallel/GenericInputControlSubBlockPendingHeapComparator.hpp libmaus2/bambam/parallel/GenericInputControlSubBlockPending.hpp libmaus2/bambam/parallel/GenericInputHeapComparator.hpp libmaus2/bambam/parallel/GenericInputMergeDecompressedBlockReturnInterface.hpp libmaus2/bambam/parallel/GenericInputMergeWorkPackageDispatcher.hpp libmaus2/bambam/parallel/GenericInputMergeWorkPackage.hpp libmaus2/bambam/parallel/GenericInputMergeWorkPackageReturnInterface.hpp libmaus2/bambam/parallel/GenericInputMergeWorkRequest.hpp libmaus2/bambam/parallel/GenericInputSingleDataBamParseInfo.hpp libmaus2/bambam/parallel/GenericInputSingleData.hpp libmaus2/bambam/parallel/GenericInputControlBlockCompressionFinishedInterface.hpp libmaus2/bambam/parallel/GenericInputControlBlockCompressionWorkPackage.hpp libmaus2/bambam/parallel/GenericInputControlBlockCompressionWorkPackageDispatcher.hpp libmaus2/bambam/parallel/GenericInputControlBlockCompressionWorkPackageReturnInterface.hpp libmaus2/bambam/parallel/GenericInputControlCompressionPending.hpp libmaus2/bambam/parallel/GenericInputControlCompressionPendingHeapComparator.hpp libmaus2/bambam/parallel/GenericInputControlGetCompressorInterface.hpp libmaus2/bambam/parallel/GenericInputControlPutCompressorInterface.hpp libmaus2/bambam/parallel/GenericInputControlReorderWorkPackage.hpp libmaus2/bambam/parallel/GenericInputControlReorderWorkPackageDispatcher.hpp libmaus2/bambam/parallel/GenericInputControlReorderWorkPackageFinishedInterface.hpp libmaus2/bambam/parallel/GenericInputControlReorderWorkPackageReturnInterface.hpp libmaus2/bambam/parallel/GenericInputControlBlockWritePackageDispatcher.hpp libmaus2/bambam/parallel/GenericInputControlBlockWritePackageBlockWrittenInterface.hpp libmaus2/bambam/parallel/GenericInputControlBlockWritePackageReturnInterface.hpp libmaus2/bambam/parallel/GenericInputControlBlockWritePackage.hpp libmaus2/bambam/parallel/GenericInputBlockSubBlockInfo.hpp libmaus2/bambam/parallel/GenericInputBlockFillResult.hpp libmaus2/bambam/parallel/GenericInputBlockTypeInfo.hpp libmaus2/bambam/parallel/GenericInputBlockAllocator.hpp libmaus2/bambam/parallel/DecompressedBlockHeapComparator.hpp libmaus2/bambam/parallel/FragmentAlignmentBufferBaseSortWorkPackageReturnInterface.hpp libmaus2/bambam/parallel/FragmentAlignmentBufferMergeSortWorkPackage.hpp libmaus2/bambam/parallel/FragmentAlignmentBufferMergeSortWorkPackageDispatcher.hpp libmaus2/bambam/parallel/PairReadEndsContainerFlushWorkPackageDispatcher.hpp libmaus2/bambam/parallel/FragmentAlignmentBufferMergeSortWorkPackageReturnInterface.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/bambam/parallel/' /usr/bin/install -c -m 644 libmaus2/bambam/parallel/FragmentAlignmentBufferPosComparator.hpp libmaus2/bambam/parallel/SamParsePending.hpp libmaus2/bambam/parallel/SamParsePendingHeapComparator.hpp libmaus2/bambam/parallel/SamParseWorkPackage.hpp libmaus2/bambam/parallel/BlockSortControlBase.hpp libmaus2/bambam/parallel/SamParsePutSamInfoInterface.hpp libmaus2/bambam/parallel/SamParseGetSamInfoInterface.hpp libmaus2/bambam/parallel/SamParseFragmentParsedInterface.hpp libmaus2/bambam/parallel/SamParseDecompressedBlockFinishedInterface.hpp libmaus2/bambam/parallel/SamParseWorkPackageReturnInterface.hpp libmaus2/bambam/parallel/SamParseWorkPackageDispatcher.hpp libmaus2/bambam/parallel/BlockSortControl.hpp libmaus2/bambam/parallel/BlockMergeControl.hpp libmaus2/bambam/parallel/GenericInputControlBlocksWritePackage.hpp libmaus2/bambam/parallel/FastQInputDescBase.hpp libmaus2/bambam/parallel/FastqToBamControlInputBlockHeapComparator.hpp libmaus2/bambam/parallel/FastqToBamControlSubReadPending.hpp libmaus2/bambam/parallel/FastqToBamControlSubReadPendingHeapComparator.hpp libmaus2/bambam/parallel/DecompressedBlockReorderHeapComparator.hpp libmaus2/bambam/parallel/FastQInputDesc.hpp libmaus2/bambam/parallel/FastqInputPackage.hpp libmaus2/bambam/parallel/FastqInputPackageReturnInterface.hpp libmaus2/bambam/parallel/FastqInputPackageAddPendingInterface.hpp libmaus2/bambam/parallel/FastqInputPackageDispatcher.hpp libmaus2/bambam/parallel/FastqParsePackage.hpp libmaus2/bambam/parallel/FastqParsePackageReturnInterface.hpp libmaus2/bambam/parallel/FastqParsePackageFinishedInterface.hpp libmaus2/bambam/parallel/FastqParsePackageDispatcher.hpp libmaus2/bambam/parallel/FastqToBamControl.hpp libmaus2/bambam/parallel/GenericInputControlBlocksWritePackageDispatcher.hpp libmaus2/bambam/parallel/GenericInputControlBlocksWritePackageReturnInterface.hpp libmaus2/bambam/parallel/ChecksumsInterfaceGetInterface.hpp libmaus2/bambam/parallel/ChecksumsInterfacePutInterface.hpp libmaus2/bambam/parallel/FileChecksumBlockWorkPackage.hpp libmaus2/bambam/parallel/FileChecksumBlockWorkPackageReturnInterface.hpp libmaus2/bambam/parallel/FileChecksumBlockFinishedInterface.hpp libmaus2/bambam/parallel/FileChecksumBlockWorkPackageDispatcher.hpp libmaus2/bambam/parallel/BamBlockIndexingWorkPackage.hpp libmaus2/bambam/parallel/BamBlockIndexingWorkPackageReturnInterface.hpp libmaus2/bambam/parallel/BamBlockIndexingBlockFinishedInterface.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/bambam/parallel/' /usr/bin/install -c -m 644 libmaus2/bambam/parallel/BamBlockIndexingWorkPackageDispatcher.hpp libmaus2/bambam/parallel/CramInterface.h libmaus2/bambam/parallel/CramOutputBlock.hpp libmaus2/bambam/parallel/CramOutputBlockSizeComparator.hpp libmaus2/bambam/parallel/SamEncoderObject.hpp libmaus2/bambam/parallel/CramOutputBlockWritePackage.hpp libmaus2/bambam/parallel/CramOutputBlockWritePackageReturnInterface.hpp libmaus2/bambam/parallel/CramOutputBlockWritePackageFinishedInterface.hpp libmaus2/bambam/parallel/CramOutputBlockWritePackageDispatcher.hpp libmaus2/bambam/parallel/CramPassPointerObject.hpp libmaus2/bambam/parallel/CramPassPointerObjectComparator.hpp libmaus2/bambam/parallel/CramPassPointerObjectTypeInfo.hpp libmaus2/bambam/parallel/CramPassPointerObjectAllocator.hpp libmaus2/bambam/parallel/ScramCramEncoding.hpp libmaus2/bambam/parallel/CramOutputBlockIdComparator.hpp libmaus2/bambam/parallel/FragmentAlignmentBufferQueryNameComparator.hpp libmaus2/bambam/parallel/CramEncodingWorkPackage.hpp libmaus2/bambam/parallel/SamEncodingWorkPackage.hpp libmaus2/bambam/parallel/SamEncodingWorkPackageWrapper.hpp libmaus2/bambam/parallel/CramOutputBlockChecksumPackage.hpp libmaus2/bambam/parallel/CramOutputBlockChecksumPackageReturnInterface.hpp libmaus2/bambam/parallel/CramOutputBlockChecksumComputedInterface.hpp libmaus2/bambam/parallel/CramOutputBlockChecksumPackageDispatcher.hpp libmaus2/bambam/parallel/CramEncodingWorkPackageReturnInterface.hpp libmaus2/bambam/parallel/SamEncodingWorkPackageWrapperReturnInterface.hpp libmaus2/bambam/parallel/SamEncodingWorkPackageDispatcher.hpp libmaus2/bambam/parallel/BlockMergeControlTypeBase.hpp libmaus2/bambam/parallel/CramEncodingSupportData.hpp libmaus2/bambam/parallel/CramEncodingWorkPackageDispatcher.hpp libmaus2/bambam/parallel/RefIdInterval.hpp libmaus2/bambam/parallel/BamBlockNumericalIndexingBlockFinishedInterface.hpp libmaus2/bambam/parallel/BamBlockNumericalIndexingWorkPackage.hpp libmaus2/bambam/parallel/BamBlockNumericalIndexingWorkPackageDispatcher.hpp libmaus2/bambam/parallel/BamBlockNumericalIndexingWorkPackageReturnInterface.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/bambam/parallel/' /usr/bin/mkdir -p '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/bed/' /usr/bin/install -c -m 644 libmaus2/bed/BED.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/bed/' /usr/bin/mkdir -p '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/bitbtree' /usr/bin/install -c -m 644 libmaus2/bitbtree/bitbtree.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/bitbtree' /usr/bin/mkdir -p '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/bitio' /usr/bin/install -c -m 644 libmaus2/bitio/BitIO.hpp libmaus2/bitio/BitIOOutput.hpp libmaus2/bitio/CompactArray.hpp libmaus2/bitio/CompactArrayBase.hpp libmaus2/bitio/OutputBuffer.hpp libmaus2/bitio/BitIOInput.hpp libmaus2/bitio/getBits.hpp libmaus2/bitio/ReverseTable.hpp libmaus2/bitio/CompactQueue.hpp libmaus2/bitio/putBits.hpp libmaus2/bitio/SwapWordBitBlock.hpp libmaus2/bitio/swapBitBlocksByReversal.hpp libmaus2/bitio/putBit.hpp libmaus2/bitio/getBit.hpp libmaus2/bitio/readElias.hpp libmaus2/bitio/BitWriter.hpp libmaus2/bitio/CheckedBitWriter.hpp libmaus2/bitio/FastWriteBitWriter.hpp libmaus2/bitio/BitVector.hpp libmaus2/bitio/SignedCompactArray.hpp libmaus2/bitio/BufferIterator.hpp libmaus2/bitio/BitVectorConcat.hpp libmaus2/bitio/CompactSparseArray.hpp libmaus2/bitio/CompactOffsetArray.hpp libmaus2/bitio/CompactOffsetOneArray.hpp libmaus2/bitio/ArrayDecode.hpp libmaus2/bitio/BitStreamFileDecoder.hpp libmaus2/bitio/Clz.hpp libmaus2/bitio/CompactDecoderBuffer.hpp libmaus2/bitio/Ctz.hpp libmaus2/bitio/CompactArrayWriter.hpp libmaus2/bitio/CompactArrayWriterFile.hpp libmaus2/bitio/PacDecoderBuffer.hpp libmaus2/bitio/MarkerFastWriteBitWriter.hpp libmaus2/bitio/BitVectorInput.hpp libmaus2/bitio/BitVectorOutput.hpp libmaus2/bitio/BitSet.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/bitio' /usr/bin/mkdir -p '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/btree' /usr/bin/install -c -m 644 libmaus2/btree/btree.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/btree' /usr/bin/mkdir -p '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/clustering' /usr/bin/install -c -m 644 libmaus2/clustering/HashCreation.hpp libmaus2/clustering/HashCreationBase.hpp libmaus2/clustering/ProduceEdgeRequest.hpp libmaus2/clustering/KmerBase.hpp libmaus2/clustering/KMeans.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/clustering' /usr/bin/mkdir -p '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/cumfreq' /usr/bin/install -c -m 644 libmaus2/cumfreq/DynamicCumulativeFrequencies.hpp libmaus2/cumfreq/SlowCumFreq.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/cumfreq' /usr/bin/mkdir -p '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/dazzler/align' /usr/bin/install -c -m 644 libmaus2/dazzler/align/AlignmentFile.hpp libmaus2/dazzler/align/Path.hpp libmaus2/dazzler/align/Overlap.hpp libmaus2/dazzler/align/TraceBlock.hpp libmaus2/dazzler/align/TraceBlockVectorCache.hpp libmaus2/dazzler/align/ApproximateRun.hpp libmaus2/dazzler/align/ApproximateRunPartContainer.hpp libmaus2/dazzler/align/SortingOverlapOutputBuffer.hpp libmaus2/dazzler/align/OverlapHeapComparator.hpp libmaus2/dazzler/align/SortingOverlapBlockInput.hpp libmaus2/dazzler/align/SortingOverlapOutputBufferMerger.hpp libmaus2/dazzler/align/AlignmentSplitWriter.hpp libmaus2/dazzler/align/OverlapMeta.hpp libmaus2/dazzler/align/OverlapIndexerBase.hpp libmaus2/dazzler/align/OverlapIndexer.hpp libmaus2/dazzler/align/AlignmentWriter.hpp libmaus2/dazzler/align/OverlapMetaIteratorGet.hpp libmaus2/dazzler/align/AlignmentFileRegion.hpp libmaus2/dazzler/align/CompactRunPartContainer.hpp libmaus2/dazzler/align/Tandem.hpp libmaus2/dazzler/align/TandemVector.hpp libmaus2/dazzler/align/TandemVectorPartContainer.hpp libmaus2/dazzler/align/TracePoint.hpp libmaus2/dazzler/align/OverlapParser.hpp libmaus2/dazzler/align/OverlapData.hpp libmaus2/dazzler/align/SimpleOverlapParser.hpp libmaus2/dazzler/align/SimpleOverlapVectorParser.hpp libmaus2/dazzler/align/LASToBamConverterBase.hpp libmaus2/dazzler/align/RefMapEntry.hpp libmaus2/dazzler/align/RefMapEntryVector.hpp libmaus2/dazzler/align/TrueOverlapStats.hpp libmaus2/dazzler/align/TrueOverlap.hpp libmaus2/dazzler/align/AlignmentWriterArray.hpp libmaus2/dazzler/align/OverlapProperCheck.hpp libmaus2/dazzler/align/DalignerIndexDecoder.hpp libmaus2/dazzler/align/AlignmentFileDecoder.hpp libmaus2/dazzler/align/OverlapHeader.hpp libmaus2/dazzler/align/GraphDecoderContextAllocator.hpp libmaus2/dazzler/align/GraphDecoderContext.hpp libmaus2/dazzler/align/GraphDecoderContextTypeInfo.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/dazzler/align' /usr/bin/install -c -m 644 libmaus2/dazzler/align/GraphDecoder.hpp libmaus2/dazzler/align/GraphEncoder.hpp libmaus2/dazzler/align/OverlapInfo.hpp libmaus2/dazzler/align/OverlapInfoIndexer.hpp libmaus2/dazzler/align/AlignmentFileSymmetryCheck.hpp libmaus2/dazzler/align/AlignmentFileCat.hpp libmaus2/dazzler/align/LasIntervals.hpp libmaus2/dazzler/align/BinIndexDecoder.hpp libmaus2/dazzler/align/LasRangeDecoder.hpp libmaus2/dazzler/align/OverlapDataInterface.hpp libmaus2/dazzler/align/SortOrderCheck.hpp libmaus2/dazzler/align/GraphCheck.hpp libmaus2/dazzler/align/FilterUnique.hpp libmaus2/dazzler/align/LasFileRange.hpp libmaus2/dazzler/align/LasSort2.hpp libmaus2/dazzler/align/OverlapAdapter.hpp libmaus2/dazzler/align/GetTransitiveStrict.hpp libmaus2/dazzler/align/ReadIntervals.hpp libmaus2/dazzler/align/ReadIntervalsVector.hpp libmaus2/dazzler/align/SubIntervalResult.hpp libmaus2/dazzler/align/AlignmentFileConstants.hpp libmaus2/dazzler/align/LasSort2Cascade.hpp libmaus2/dazzler/align/LasMerge2.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/dazzler/align' /usr/bin/mkdir -p '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/dazzler/db' /usr/bin/install -c -m 644 libmaus2/dazzler/db/IndexBase.hpp libmaus2/dazzler/db/FastaInfo.hpp libmaus2/dazzler/db/DatabaseFile.hpp libmaus2/dazzler/db/InputBase.hpp libmaus2/dazzler/db/GetByteCounter.hpp libmaus2/dazzler/db/Read.hpp libmaus2/dazzler/db/OutputBase.hpp libmaus2/dazzler/db/TrackAnnoInterface.hpp libmaus2/dazzler/db/TrackAnno.hpp libmaus2/dazzler/db/Track.hpp libmaus2/dazzler/db/InqualContainer.hpp libmaus2/dazzler/db/PartTrackContainer.hpp libmaus2/dazzler/db/ReadLRUContainer.hpp libmaus2/dazzler/db/SatsContainer.hpp libmaus2/dazzler/db/ReadContainer.hpp libmaus2/dazzler/db/StringTrackWriter.hpp libmaus2/dazzler/db/IQVDecoder.hpp libmaus2/dazzler/db/TrackExtra.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/dazzler/db' /usr/bin/mkdir -p '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/dazzler/stringgraph' /usr/bin/install -c -m 644 libmaus2/dazzler/stringgraph/Edge.hpp libmaus2/dazzler/stringgraph/OverlapNode.hpp libmaus2/dazzler/stringgraph/StringGraph.hpp libmaus2/dazzler/stringgraph/ContainmentInfo.hpp libmaus2/dazzler/stringgraph/TraversalElement.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/dazzler/stringgraph' /usr/bin/mkdir -p '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/deleter' /usr/bin/install -c -m 644 libmaus2/deleter/Deleter.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/deleter' /usr/bin/mkdir -p '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/demangle' /usr/bin/install -c -m 644 libmaus2/demangle/Demangle.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/demangle' /usr/bin/mkdir -p '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/digest' /usr/bin/install -c -m 644 libmaus2/digest/DigestBase.hpp libmaus2/digest/SHA1.hpp libmaus2/digest/SHA2_224.hpp libmaus2/digest/SHA2_256.hpp libmaus2/digest/SHA2_384.hpp libmaus2/digest/SHA2_512.hpp libmaus2/digest/CRC32.hpp libmaus2/digest/Digests.hpp libmaus2/digest/Null.hpp libmaus2/digest/CRC32C_Core.hpp libmaus2/digest/CRC32C.hpp libmaus2/digest/CRC32_Core.hpp libmaus2/digest/DigestInterface.hpp libmaus2/digest/DigestFactory.hpp libmaus2/digest/DigestFactoryContainer.hpp libmaus2/digest/DigestFactoryInterface.hpp libmaus2/digest/md5.hpp libmaus2/digest/md5.h libmaus2/digest/MurmurHash3_x64_128.hpp libmaus2/digest/SHA3_256.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/digest' /usr/bin/mkdir -p '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/eta' /usr/bin/install -c -m 644 libmaus2/eta/LinearETA.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/eta' /usr/bin/mkdir -p '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/exception' /usr/bin/install -c -m 644 libmaus2/exception/LibMausException.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/exception' /usr/bin/mkdir -p '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/fastx' /usr/bin/install -c -m 644 libmaus2/fastx/CharTermTable.hpp libmaus2/fastx/SpaceTable.hpp libmaus2/fastx/CharBuffer.hpp libmaus2/fastx/Pattern.hpp libmaus2/fastx/acgtnMap.hpp libmaus2/fastx/FastAReader.hpp libmaus2/fastx/PatternBlock.hpp libmaus2/fastx/FastIDBlock.hpp libmaus2/fastx/FastQReader.hpp libmaus2/fastx/FASTQEntry.hpp libmaus2/fastx/isFastQ.hpp libmaus2/fastx/MultiWordDNABitBuffer.hpp libmaus2/fastx/SingleWordDNABitBuffer.hpp libmaus2/fastx/FastInterval.hpp libmaus2/fastx/FastAReaderSplit.hpp libmaus2/fastx/FastQReaderSplit.hpp libmaus2/fastx/ConcatWriter.hpp libmaus2/fastx/FastFirstToLastReverseAdapter.hpp libmaus2/fastx/CompactFastDecoderBase.hpp libmaus2/fastx/CompactFastDecoder.hpp libmaus2/fastx/CompactFastEncoder.hpp libmaus2/fastx/CompactReadContainer.hpp libmaus2/fastx/SubSamplingFastReader.hpp libmaus2/fastx/SlashStrip.hpp libmaus2/fastx/FirstWhiteSpaceSlashStrip.hpp libmaus2/fastx/Phred.hpp libmaus2/fastx/FastQElement.hpp libmaus2/fastx/ComputeFastXIntervals.hpp libmaus2/fastx/FqWeightQuantiser.hpp libmaus2/fastx/CompactFastQHeader.hpp libmaus2/fastx/CompactFastQContext.hpp libmaus2/fastx/CompactFastQDecoderBase.hpp libmaus2/fastx/CompactFastQContainerDictionary.hpp libmaus2/fastx/CompactFastQContainer.hpp libmaus2/fastx/CompactFastQContainerDictionaryCreator.hpp libmaus2/fastx/CompactFastQBlockGenerator.hpp libmaus2/fastx/CompactFastQSingleBlockReader.hpp libmaus2/fastx/CompactFastQMultiBlockReader.hpp libmaus2/fastx/CompactFastTerminator.hpp libmaus2/fastx/CompactFastReplace.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/fastx' /usr/bin/install -c -m 644 libmaus2/fastx/QReorder.hpp libmaus2/fastx/StreamFastReaderBase.hpp libmaus2/fastx/StreamFastQReader.hpp libmaus2/fastx/GzipStreamFastQReader.hpp libmaus2/fastx/GzipFileFastQReader.hpp libmaus2/fastx/FastQBgzfWriter.hpp libmaus2/fastx/StreamFastAReader.hpp libmaus2/fastx/FastALineParserLineInfo.hpp libmaus2/fastx/FastADefinedBasesTable.hpp libmaus2/fastx/FastAMapTable.hpp libmaus2/fastx/FastAMatchTable.hpp libmaus2/fastx/FastALineParser.hpp libmaus2/fastx/FastAStreamWrapper.hpp libmaus2/fastx/FastAStream.hpp libmaus2/fastx/FastAStreamSet.hpp libmaus2/fastx/BgzfFastAIndexEntry.hpp libmaus2/fastx/BgzfFastAIndexEntryNameComparator.hpp libmaus2/fastx/BgzfFastAIndexEntryIdComparator.hpp libmaus2/fastx/FastABgzfIndexEntry.hpp libmaus2/fastx/FastABgzfIndex.hpp libmaus2/fastx/FastABgzfDecoder.hpp libmaus2/fastx/FastABgzfDecoderBuffer.hpp libmaus2/fastx/FastAIndexEntry.hpp libmaus2/fastx/FastAIndex.hpp libmaus2/fastx/FastAInfo.hpp libmaus2/fastx/FastATwoBitTable.hpp libmaus2/fastx/FastABPConstants.hpp libmaus2/fastx/FastABPGenerator.hpp libmaus2/fastx/FastaBPSequenceDecoder.hpp libmaus2/fastx/FastaBPDecoder.hpp libmaus2/fastx/NameInfoBase.hpp libmaus2/fastx/NameInfo.hpp libmaus2/fastx/RefPathToken.hpp libmaus2/fastx/RefPathTokenVector.hpp libmaus2/fastx/RefPathTokenVectorSequence.hpp libmaus2/fastx/RefPathLookup.hpp libmaus2/fastx/DNAIndexMetaDataSequence.hpp libmaus2/fastx/DNAIndexMetaData.hpp libmaus2/fastx/DNAIndexMetaDataBigBand.hpp libmaus2/fastx/DNAIndexMetaDataBigBandBiDir.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/fastx' /usr/bin/install -c -m 644 libmaus2/fastx/CoordinateCache.hpp libmaus2/fastx/LineBufferFastAReader.hpp libmaus2/fastx/FastAToCompact4BigBandBiDir.hpp libmaus2/fastx/FastAToCompact4BigBand.hpp libmaus2/fastx/FastAIndexGenerator.hpp libmaus2/fastx/CoordinateCacheBiDir.hpp libmaus2/fastx/KmerFreqInWindowStats.hpp libmaus2/fastx/ReadContainer.hpp libmaus2/fastx/KmerRepeatDetector.hpp libmaus2/fastx/FastaPeeker.hpp libmaus2/fastx/FastqPeeker.hpp libmaus2/fastx/KmerCount.hpp libmaus2/fastx/GCContent.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/fastx' /usr/bin/mkdir -p '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/fm' /usr/bin/install -c -m 644 libmaus2/fm/FM.hpp libmaus2/fm/SampledSA.hpp libmaus2/fm/SampledISA.hpp libmaus2/fm/MausFmToBwaConversion.hpp libmaus2/fm/BidirectionalIndexInterval.hpp libmaus2/fm/BidirectionalIndexIntervalSymbol.hpp libmaus2/fm/DictionaryInfo.hpp libmaus2/fm/DictionaryInfoImpCompactHuffmanWaveletTree.hpp libmaus2/fm/BidirectionalDnaIndexTemplate.hpp libmaus2/fm/KmerCache.hpp libmaus2/fm/FA4CompactSampledSuffixArray.hpp libmaus2/fm/BiIndex.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/fm' /usr/bin/mkdir -p '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/gamma/' /usr/bin/install -c -m 644 libmaus2/gamma/GammaGenericBase.hpp libmaus2/gamma/GammaGenericClz.hpp libmaus2/gamma/GammaGenericDecoder.hpp libmaus2/gamma/GammaGenericEncoder.hpp libmaus2/gamma/GammaEncoder.hpp libmaus2/gamma/GammaDecoder.hpp libmaus2/gamma/GammaGapEncoder.hpp libmaus2/gamma/GammaGapDecoder.hpp libmaus2/gamma/GammaRLDecoder.hpp libmaus2/gamma/GammaRLEncoder.hpp libmaus2/gamma/SparseGammaGapEncoder.hpp libmaus2/gamma/SparseGammaGapDecoder.hpp libmaus2/gamma/SparseGammaGapMerge.hpp libmaus2/gamma/SparseGammaGapFile.hpp libmaus2/gamma/SparseGammaGapMultiFile.hpp libmaus2/gamma/SparseGammaGapFileSet.hpp libmaus2/gamma/SparseGammaGapFileLevelSet.hpp libmaus2/gamma/SparseGammaGapFileIndexDecoderEntry.hpp libmaus2/gamma/SparseGammaGapFileIndexDecoder.hpp libmaus2/gamma/SparseGammaGapFileIndexMultiDecoder.hpp libmaus2/gamma/SparseGammaGapConcatDecoder.hpp libmaus2/gamma/SparseGammaGapMultiFileSet.hpp libmaus2/gamma/SparseGammaGapMultiFileLevelSet.hpp libmaus2/gamma/SparseGammaGapBlockEncoder.hpp libmaus2/gamma/GammaDifferenceEncoder.hpp libmaus2/gamma/GammaDifferenceDecoder.hpp libmaus2/gamma/GammaDifferenceMerge.hpp libmaus2/gamma/GammaDifferenceOutputBuffer.hpp libmaus2/gamma/GammaEncoderBase.hpp libmaus2/gamma/SimpleGammaEncoderData.hpp libmaus2/gamma/SimpleGammaEncoder.hpp libmaus2/gamma/GammaDecoderBase.hpp libmaus2/gamma/SimpleGammaDecoderData.hpp libmaus2/gamma/SimpleGammaDecoder.hpp libmaus2/gamma/SimpleGammaEncoderArray.hpp libmaus2/gamma/GammaPartitionEncoder.hpp libmaus2/gamma/GammaIntervalEncoder.hpp libmaus2/gamma/GammaPartitionDecoder.hpp libmaus2/gamma/GammaIntervalDecoder.hpp libmaus2/gamma/GammaPDEncoder.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/gamma/' /usr/bin/install -c -m 644 libmaus2/gamma/GammaPDDecoder.hpp libmaus2/gamma/GammaPDIndexDecoderBase.hpp libmaus2/gamma/GammaPDIndexDecoder.hpp libmaus2/gamma/Interval.hpp libmaus2/gamma/FlaggedInterval.hpp libmaus2/gamma/GammaFlaggedPartitionDecoder.hpp libmaus2/gamma/GammaFlaggedPartitionEncoder.hpp libmaus2/gamma/GammaFlaggedIntervalDecoder.hpp libmaus2/gamma/GammaFlaggedIntervalEncoder.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/gamma/' /usr/bin/mkdir -p '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/geometry' /usr/bin/install -c -m 644 libmaus2/geometry/RangeSet.hpp libmaus2/geometry/IntervalTree.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/geometry' /usr/bin/mkdir -p '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/graph' /usr/bin/install -c -m 644 libmaus2/graph/StronglyConnectedComponents.hpp libmaus2/graph/IdentityTargetProjector.hpp libmaus2/graph/ReachableVertices.hpp libmaus2/graph/TopologicalSorting.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/graph' /usr/bin/mkdir -p '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/gtf/' /usr/bin/install -c -m 644 libmaus2/gtf/BAMGTFMap.hpp libmaus2/gtf/CDS.hpp libmaus2/gtf/Exon.hpp libmaus2/gtf/ExonIdOffsetComparator.hpp libmaus2/gtf/ExonInfo.hpp libmaus2/gtf/ExonInterval.hpp libmaus2/gtf/ExonSubInfo.hpp libmaus2/gtf/Gene.hpp libmaus2/gtf/GeneChrComparator.hpp libmaus2/gtf/GeneRangeSets.hpp libmaus2/gtf/GTFData.hpp libmaus2/gtf/IntervalList.hpp libmaus2/gtf/IntervalListSet.hpp libmaus2/gtf/RangeSets.hpp libmaus2/gtf/Tag.hpp libmaus2/gtf/Transcript.hpp libmaus2/gtf/TranscriptRangeSets.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/gtf/' /usr/bin/mkdir -p '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/hashing' /usr/bin/install -c -m 644 libmaus2/hashing/hash.hpp libmaus2/hashing/CircularHash.hpp libmaus2/hashing/ConstantStringHash.hpp libmaus2/hashing/Crc32.hpp libmaus2/hashing/MurmurHash3.h '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/hashing' /usr/bin/mkdir -p '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/huffman' /usr/bin/install -c -m 644 libmaus2/huffman/CompressTable.hpp libmaus2/huffman/DecodeTable.hpp libmaus2/huffman/EncodeTable.hpp libmaus2/huffman/hufEncodeString.hpp libmaus2/huffman/HuffmanBase.hpp libmaus2/huffman/huffman.hpp libmaus2/huffman/HuffmanSorting.hpp libmaus2/huffman/HuffmanTreeInnerNode.hpp libmaus2/huffman/HuffmanTreeLeafComparator.hpp libmaus2/huffman/HuffmanTreeLeaf.hpp libmaus2/huffman/HuffmanTreeNode.hpp libmaus2/huffman/CanonicalEncoder.hpp libmaus2/huffman/RLDecoder.hpp libmaus2/huffman/RLEncoder.hpp libmaus2/huffman/HuffmanEncoderFile.hpp libmaus2/huffman/IndexLoader.hpp libmaus2/huffman/GapDecoder.hpp libmaus2/huffman/GapEncoder.hpp libmaus2/huffman/FileStreamBaseType.hpp libmaus2/huffman/BitInputBuffer.hpp libmaus2/huffman/PairAddSecond.hpp libmaus2/huffman/IndexEntry.hpp libmaus2/huffman/IndexLoaderBase.hpp libmaus2/huffman/RLDecoderIndexBase.hpp libmaus2/huffman/GapDecoderIndexBase.hpp libmaus2/huffman/IndexDecoderDataArray.hpp libmaus2/huffman/HuffmanInputFile.hpp libmaus2/huffman/KvInitResult.hpp libmaus2/huffman/HuffmanTree.hpp libmaus2/huffman/SymCountEncoder.hpp libmaus2/huffman/SymCountDecoder.hpp libmaus2/huffman/SymCount.hpp libmaus2/huffman/IndexWriter.hpp libmaus2/huffman/SymCountRun.hpp libmaus2/huffman/RLInitType.hpp libmaus2/huffman/RLRun.hpp libmaus2/huffman/LFInfo.hpp libmaus2/huffman/LFSupportDecoder.hpp libmaus2/huffman/LFSupportEncoder.hpp libmaus2/huffman/LFSupportBitDecoder.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/huffman' /usr/bin/install -c -m 644 libmaus2/huffman/LFSetBit.hpp libmaus2/huffman/LFSetBitDecoder.hpp libmaus2/huffman/LFSetBitEncoder.hpp libmaus2/huffman/LFValueEncoder.hpp libmaus2/huffman/LFValueDecoder.hpp libmaus2/huffman/LFValue.hpp libmaus2/huffman/LFPhiPairDecoder.hpp libmaus2/huffman/LFPhiPairEncoder.hpp libmaus2/huffman/LFPhiPair.hpp libmaus2/huffman/LFPhiPairLCP.hpp libmaus2/huffman/LFPhiPairLCPDecoder.hpp libmaus2/huffman/LFPhiPairLCPEncoder.hpp libmaus2/huffman/LFRankLCP.hpp libmaus2/huffman/LFRankLCPDecoder.hpp libmaus2/huffman/LFRankLCPEncoder.hpp libmaus2/huffman/SymBit.hpp libmaus2/huffman/SymBitDecoder.hpp libmaus2/huffman/SymBitEncoder.hpp libmaus2/huffman/SymBitRun.hpp libmaus2/huffman/LFRankPos.hpp libmaus2/huffman/LFRankPosEncoder.hpp libmaus2/huffman/LFRankPosDecoder.hpp libmaus2/huffman/LFSymRankPos.hpp libmaus2/huffman/LFSymRankPosDecoder.hpp libmaus2/huffman/LFSymRankPosEncoder.hpp libmaus2/huffman/InputAdapter.hpp libmaus2/huffman/OutputAdapter.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/huffman' /usr/bin/mkdir -p '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/index/' /usr/bin/install -c -m 644 libmaus2/index/ExternalMemoryIndexGenerator.hpp libmaus2/index/ExternalMemoryIndexRecord.hpp libmaus2/index/ExternalMemoryIndexDecoder.hpp libmaus2/index/ExternalMemoryIndexDecoderFindLargestSmallerResult.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/index/' /usr/bin/mkdir -p '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/lcp' /usr/bin/install -c -m 644 libmaus2/lcp/LCP.hpp libmaus2/lcp/SuccinctLCP.hpp libmaus2/lcp/WaveletLCPResult.hpp libmaus2/lcp/WaveletLCP.hpp libmaus2/lcp/ComputeSuccinctLCPResult.hpp libmaus2/lcp/PLCPBitDecoder.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/lcp' /usr/bin/mkdir -p '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/lcs' /usr/bin/install -c -m 644 libmaus2/lcs/SuffixArrayLCS.hpp libmaus2/lcs/LCSRef.hpp libmaus2/lcs/LCSDynamic.hpp libmaus2/lcs/SuffixPrefix.hpp libmaus2/lcs/LCS.hpp libmaus2/lcs/GenericEditDistance.hpp libmaus2/lcs/EditDistanceResult.hpp libmaus2/lcs/BaseConstants.hpp libmaus2/lcs/PenaltyConstants.hpp libmaus2/lcs/TraceContainer.hpp libmaus2/lcs/GenericAlignmentPrint.hpp libmaus2/lcs/SuffixPrefixResult.hpp libmaus2/lcs/SuffixPrefixAlignmentPrint.hpp libmaus2/lcs/DistNodeType.hpp libmaus2/lcs/OverlapOrientation.hpp libmaus2/lcs/AlignmentPrint.hpp libmaus2/lcs/AlignmentTraceContainer.hpp libmaus2/lcs/EditDistance.hpp libmaus2/lcs/BandedEditDistance.hpp libmaus2/lcs/MetaEditDistance.hpp libmaus2/lcs/EditDistanceTraceContainer.hpp libmaus2/lcs/EditDistancePriorityType.hpp libmaus2/lcs/LocalBaseConstants.hpp libmaus2/lcs/LocalPenaltyConstants.hpp libmaus2/lcs/LocalAlignmentTraceContainer.hpp libmaus2/lcs/LocalEditDistanceTraceContainer.hpp libmaus2/lcs/LocalAlignmentPrint.hpp libmaus2/lcs/LocalEditDistance.hpp libmaus2/lcs/LocalEditDistanceResult.hpp libmaus2/lcs/MetaLocalEditDistance.hpp libmaus2/lcs/BandedLocalEditDistance.hpp libmaus2/lcs/AlignmentStatistics.hpp libmaus2/lcs/BitVectorResultCallbackInterface.hpp libmaus2/lcs/BitVector.hpp libmaus2/lcs/SimdX86GlobalAlignmentConstants128.hpp libmaus2/lcs/SimdX86GlobalAlignmentConstants256.hpp libmaus2/lcs/SimdX86GlobalAlignmentTemplate.hpp libmaus2/lcs/SimdX86GlobalAlignmentX128_16_def.hpp libmaus2/lcs/SimdX86GlobalAlignmentX128_16.hpp libmaus2/lcs/SimdX86GlobalAlignmentX128_16_undef.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/lcs' /usr/bin/install -c -m 644 libmaus2/lcs/SimdX86GlobalAlignmentX128_8_def.hpp libmaus2/lcs/SimdX86GlobalAlignmentX128_8.hpp libmaus2/lcs/SimdX86GlobalAlignmentX128_8_undef.hpp libmaus2/lcs/SimdX86GlobalAlignmentY256_16_def.hpp libmaus2/lcs/SimdX86GlobalAlignmentY256_16.hpp libmaus2/lcs/SimdX86GlobalAlignmentY256_16_undef.hpp libmaus2/lcs/SimdX86GlobalAlignmentY256_8_def.hpp libmaus2/lcs/SimdX86GlobalAlignmentY256_8.hpp libmaus2/lcs/SimdX86GlobalAlignmentY256_8_undef.hpp libmaus2/lcs/Aligner.hpp libmaus2/lcs/AlignerFactory.hpp libmaus2/lcs/SimdX86BandedGlobalAlignmentTemplate.hpp libmaus2/lcs/SimdX86BandedGlobalAlignmentX128_16_def.hpp libmaus2/lcs/SimdX86BandedGlobalAlignmentX128_16.hpp libmaus2/lcs/SimdX86BandedGlobalAlignmentX128_16_undef.hpp libmaus2/lcs/SimdX86BandedGlobalAlignmentX128_8_def.hpp libmaus2/lcs/SimdX86BandedGlobalAlignmentX128_8.hpp libmaus2/lcs/SimdX86BandedGlobalAlignmentX128_8_undef.hpp libmaus2/lcs/SimdX86BandedGlobalAlignmentY256_16_def.hpp libmaus2/lcs/SimdX86BandedGlobalAlignmentY256_16.hpp libmaus2/lcs/SimdX86BandedGlobalAlignmentY256_16_undef.hpp libmaus2/lcs/SimdX86BandedGlobalAlignmentY256_8_def.hpp libmaus2/lcs/SimdX86BandedGlobalAlignmentY256_8.hpp libmaus2/lcs/SimdX86BandedGlobalAlignmentY256_8_undef.hpp libmaus2/lcs/BandedAligner.hpp libmaus2/lcs/BandedAlignerFactory.hpp libmaus2/lcs/NP.hpp libmaus2/lcs/NPL.hpp libmaus2/lcs/NPLSelf.hpp libmaus2/lcs/NNP.hpp libmaus2/lcs/NNPCor.hpp libmaus2/lcs/NNPTraceElement.hpp libmaus2/lcs/NNPTraceContainer.hpp libmaus2/lcs/NNPAlignResult.hpp libmaus2/lcs/ScoreBandedAligner.hpp libmaus2/lcs/SimdX86BandedGlobalAlignmentScoreTemplate.hpp libmaus2/lcs/SimdX86BandedGlobalAlignmentScoreY256_16.hpp libmaus2/lcs/SimdX86BandedGlobalAlignmentScoreY256_16_def.hpp libmaus2/lcs/SimdX86BandedGlobalAlignmentScoreY256_16_undef.hpp libmaus2/lcs/SimdX86GlobalAlignmentScoreConstants256.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/lcs' /usr/bin/install -c -m 644 libmaus2/lcs/NNPLocalAligner.hpp libmaus2/lcs/NNPCorLocalAligner.hpp libmaus2/lcs/ChainAddQueueElementHeapComparator.hpp libmaus2/lcs/ChainNode.hpp libmaus2/lcs/ChainRemoveQueueElement.hpp libmaus2/lcs/ChainAddQueueElement.hpp libmaus2/lcs/ChainNodeInfo.hpp libmaus2/lcs/ChainSplayTreeNodeComparator.hpp libmaus2/lcs/ChainAlignment.hpp libmaus2/lcs/ChainNodeInfoSet.hpp libmaus2/lcs/ChainSplayTreeNode.hpp libmaus2/lcs/Chain.hpp libmaus2/lcs/ChainRemoveQueueElementComparator.hpp libmaus2/lcs/ChainLeftMostComparator.hpp libmaus2/lcs/SMEMProcessor.hpp libmaus2/lcs/AlignmentOneAgainstManyAVX2.hpp libmaus2/lcs/AlignmentOneAgainstManyInterface.hpp libmaus2/lcs/AlignmentOneAgainstManyGeneric.hpp libmaus2/lcs/AlignmentOneAgainstManyFactory.hpp libmaus2/lcs/NNPCorL.hpp libmaus2/lcs/NPLinMem.hpp libmaus2/lcs/NPNoTrace.hpp libmaus2/lcs/NPLNoTrace.hpp libmaus2/lcs/NPLLinMem.hpp libmaus2/lcs/CheckSelf.hpp libmaus2/lcs/PosMapping.hpp libmaus2/lcs/TwoSidedNPL.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/lcs' /usr/bin/mkdir -p '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/lf' /usr/bin/install -c -m 644 libmaus2/lf/LF.hpp libmaus2/lf/HuffmanLF.hpp libmaus2/lf/LFZero.hpp libmaus2/lf/DArray.hpp libmaus2/lf/ImpCompactHuffmanWaveletLF.hpp libmaus2/lf/LFBase.hpp libmaus2/lf/QuickLF.hpp libmaus2/lf/MultiRankLF.hpp libmaus2/lf/MultiRankCacheLF.hpp libmaus2/lf/ImpCacheLineRankLF.hpp libmaus2/lf/ImpCacheLineRankLFNonZero.hpp libmaus2/lf/ImpHuffmanWaveletLF.hpp libmaus2/lf/ImpWTLF.hpp libmaus2/lf/RLIndexLF.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/lf' /usr/bin/mkdir -p '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/lru' /usr/bin/install -c -m 644 libmaus2/lru/LRU.hpp libmaus2/lru/SparseLRU.hpp libmaus2/lru/SparseLRUFileBunch.hpp libmaus2/lru/FileBunchLRU.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/lru' /usr/bin/mkdir -p '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/lz/' /usr/bin/install -c -m 644 libmaus2/lz/Inflate.hpp libmaus2/lz/GzipHeader.hpp libmaus2/lz/StreamWrapper.hpp libmaus2/lz/GzipSingleStream.hpp libmaus2/lz/GzipStream.hpp libmaus2/lz/GzipStreamWrapper.hpp libmaus2/lz/BufferedGzipStream.hpp libmaus2/lz/StdOstreamSink.hpp libmaus2/lz/IstreamSource.hpp libmaus2/lz/SnappyCompress.hpp libmaus2/lz/BgzfInflate.hpp libmaus2/lz/BgzfInflateWrapper.hpp libmaus2/lz/BgzfInflateStream.hpp libmaus2/lz/BgzfDeflate.hpp libmaus2/lz/BgzfInflateBase.hpp libmaus2/lz/BgzfInflateBlock.hpp libmaus2/lz/BgzfInflateParallel.hpp libmaus2/lz/BgzfInflateParallelWrapper.hpp libmaus2/lz/BgzfInflateParallelStream.hpp libmaus2/lz/BgzfDeflateBase.hpp libmaus2/lz/BgzfInflateBlockIdComparator.hpp libmaus2/lz/BgzfInflateBlockIdInfo.hpp libmaus2/lz/BgzfInflateParallelContext.hpp libmaus2/lz/BgzfInflateParallelThread.hpp libmaus2/lz/BgzfDeflateBlockIdInfo.hpp libmaus2/lz/BgzfDeflateBlockIdComparator.hpp libmaus2/lz/BgzfDeflateParallelContext.hpp libmaus2/lz/BgzfDeflateParallelThread.hpp libmaus2/lz/BgzfConstants.hpp libmaus2/lz/BgzfDeflateHeaderFunctions.hpp libmaus2/lz/BgzfDeflateInputBufferBase.hpp libmaus2/lz/BgzfDeflateOutputBufferBase.hpp libmaus2/lz/BgzfDeflateZStreamBase.hpp libmaus2/lz/BgzfInflateHeaderBase.hpp libmaus2/lz/BgzfInflateZStreamBase.hpp libmaus2/lz/BgzfRecode.hpp libmaus2/lz/BgzfThreadOpBase.hpp libmaus2/lz/BgzfInflateDeflateParallel.hpp libmaus2/lz/BgzfInflateDeflateParallelThread.hpp libmaus2/lz/BgzfDeflateParallel.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/lz/' /usr/bin/install -c -m 644 libmaus2/lz/BgzfVirtualOffset.hpp libmaus2/lz/BgzfInflateDeflateParallelWrapper.hpp libmaus2/lz/BgzfInflateDeflateParallelInputStream.hpp libmaus2/lz/BgzfDeflateOutputCallback.hpp libmaus2/lz/BgzfDeflateOutputCallbackMD5.hpp libmaus2/lz/BgzfParallelRecodeDeflateBase.hpp libmaus2/lz/BgzfRecodeParallel.hpp libmaus2/lz/BgzfDeflateZStreamBaseFlushInfo.hpp libmaus2/lz/BgzfChunkInputStreamBuffer.hpp libmaus2/lz/BgzfChunkInputStream.hpp libmaus2/lz/Lz4Base.hpp libmaus2/lz/Lz4CompressStreamBuffer.hpp libmaus2/lz/Lz4CompressWrapper.hpp libmaus2/lz/Lz4Decoder.hpp libmaus2/lz/Lz4Index.hpp libmaus2/lz/Lz4Compress.hpp libmaus2/lz/Lz4CompressStream.hpp libmaus2/lz/Lz4DecoderBuffer.hpp libmaus2/lz/GzipOutputStreamBuffer.hpp libmaus2/lz/GzipOutputStream.hpp libmaus2/lz/BgzfInflateInfo.hpp libmaus2/lz/BgzfStreamWrapper.hpp libmaus2/lz/CompressorObject.hpp libmaus2/lz/CompressorObjectFactory.hpp libmaus2/lz/SimpleCompressedOutputStream.hpp libmaus2/lz/SnappyCompressorObject.hpp libmaus2/lz/SnappyCompressorObjectFactory.hpp libmaus2/lz/DecompressorObject.hpp libmaus2/lz/DecompressorObjectFactory.hpp libmaus2/lz/SnappyDecompressorObject.hpp libmaus2/lz/SnappyDecompressorObjectFactory.hpp libmaus2/lz/SimpleCompressedInputStream.hpp libmaus2/lz/SimpleCompressedConcatInputStreamFragment.hpp libmaus2/lz/SimpleCompressedConcatInputStream.hpp libmaus2/lz/SnappyInputStreamArrayFile.hpp libmaus2/lz/SnappyInputStreamArray.hpp libmaus2/lz/SnappyStringInputStream.hpp libmaus2/lz/SnappyOffsetFileInputStream.hpp libmaus2/lz/SnappyFileInputStream.hpp libmaus2/lz/SnappyInputStream.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/lz/' /usr/bin/install -c -m 644 libmaus2/lz/SnappyFileOutputStream.hpp libmaus2/lz/SnappyOutputStream.hpp libmaus2/lz/SimpleCompressedStreamInterval.hpp libmaus2/lz/ZlibCompressorObjectFactory.hpp libmaus2/lz/ZlibDecompressorObjectFactory.hpp libmaus2/lz/ZlibCompressorObject.hpp libmaus2/lz/ZlibDecompressorObject.hpp libmaus2/lz/SimpleCompressedStreamNamedInterval.hpp libmaus2/lz/SimpleCompressedInputBlock.hpp libmaus2/lz/SimpleCompressedInputBlockConcat.hpp libmaus2/lz/SimpleCompressedInputBlockConcatBlock.hpp libmaus2/lz/IsGzip.hpp libmaus2/lz/BufferedGzipStreamWrapper.hpp libmaus2/lz/StreamWrapperBuffer.hpp libmaus2/lz/BufferedGzipStreamBuffer.hpp libmaus2/lz/PlainOrGzipStreamBufferWrapper.hpp libmaus2/lz/PlainOrGzipStream.hpp libmaus2/lz/LineSplittingGzipOutputStreamBuffer.hpp libmaus2/lz/LineSplittingGzipOutputStream.hpp libmaus2/lz/CompressorObjectFreeListAllocator.hpp libmaus2/lz/SnappyCompressorObjectFreeListAllocator.hpp libmaus2/lz/SnappyCompressorObjectFactoryWrapper.hpp libmaus2/lz/ZlibCompressorObjectFactoryWrapper.hpp libmaus2/lz/ZlibCompressorObjectFreeListAllocator.hpp libmaus2/lz/CompressorObjectFreeListAllocatorFactory.hpp libmaus2/lz/BgzfDeflateOutputBufferBaseTypeInfo.hpp libmaus2/lz/BgzfDeflateOutputBufferBaseAllocator.hpp libmaus2/lz/BgzfDeflateZStreamBaseAllocator.hpp libmaus2/lz/BgzfDeflateZStreamBaseTypeInfo.hpp libmaus2/lz/BgzfInflateZStreamBaseAllocator.hpp libmaus2/lz/BgzfInflateZStreamBaseTypeInfo.hpp libmaus2/lz/XzDecoder.hpp libmaus2/lz/XzInputStreamBuffer.hpp libmaus2/lz/XzInputStream.hpp libmaus2/lz/ZlibInterface.hpp libmaus2/lz/BgzfInflateFile.hpp libmaus2/lz/BgzfInflateBaseTypeInfo.hpp libmaus2/lz/BgzfInflateBaseAllocator.hpp libmaus2/lz/BgzfInflateReadPackageDispatcher.hpp libmaus2/lz/BgzfInflateDecompressPackageDispatcher.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/lz/' /usr/bin/install -c -m 644 libmaus2/lz/BgzfInputContext.hpp libmaus2/lz/BgzfInflateThreadPoolReader.hpp libmaus2/lz/DeflateDefaults.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/lz/' /usr/bin/mkdir -p '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/math' /usr/bin/install -c -m 644 libmaus2/math/isqrt.hpp libmaus2/math/bitsPerNum.hpp libmaus2/math/MetaLog.hpp libmaus2/math/lowbits.hpp libmaus2/math/numbits.hpp libmaus2/math/gcd.hpp libmaus2/math/binom.hpp libmaus2/math/primes16.hpp libmaus2/math/ilog.hpp libmaus2/math/DoubleCode.hpp libmaus2/math/iabs.hpp libmaus2/math/IPower.hpp libmaus2/math/Log.hpp libmaus2/math/ipow.hpp libmaus2/math/IntegerInterval.hpp libmaus2/math/DecimalNumberParser.hpp libmaus2/math/UnsignedInteger.hpp libmaus2/math/Rational.hpp libmaus2/math/BernoulliNumber.hpp libmaus2/math/Faulhaber.hpp libmaus2/math/RepetetiveKmerFreqEstimate.hpp libmaus2/math/GmpInteger.hpp libmaus2/math/GmpFloat.hpp libmaus2/math/Convolution.hpp libmaus2/math/GeneralisedBernoulli.hpp libmaus2/math/GeneralisedClusterBernoulli.hpp libmaus2/math/ClusteredBernoulli.hpp libmaus2/math/RationalPolynomialSupport.hpp libmaus2/math/ConstantSumCombinatorics.hpp libmaus2/math/LGammaCache.hpp libmaus2/math/Bernoulli.hpp libmaus2/math/NormalDistribution.hpp libmaus2/math/LogNormalDistribution.hpp libmaus2/math/Distribution.hpp libmaus2/math/HistogramBuckets.hpp libmaus2/math/Matrix.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/math' /usr/bin/mkdir -p '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/network' /usr/bin/install -c -m 644 libmaus2/network/GetHostName.hpp libmaus2/network/UrlBase.hpp libmaus2/network/FileUrl.hpp libmaus2/network/UrlInputStreamBufferWrapper.hpp libmaus2/network/UrlInputStream.hpp libmaus2/network/UrlInputStreamFactory.hpp libmaus2/network/CurlInitObject.hpp libmaus2/network/CurlOutputBlock.hpp libmaus2/network/CurlResponseAcceptor.hpp libmaus2/network/HttpCurlResponseAcceptor.hpp libmaus2/network/FtpCurlResponseAcceptor.hpp libmaus2/network/CurlObject.hpp libmaus2/network/CurlObjectReader.hpp libmaus2/network/CurlObjectThreadCallable.hpp libmaus2/network/CurlInputStreamBuffer.hpp libmaus2/network/CurlInputStream.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/network' /usr/bin/mkdir -p '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/parallel' /usr/bin/install -c -m 644 libmaus2/parallel/AtomicQueue.hpp libmaus2/parallel/AtomicStack.hpp libmaus2/parallel/AtomicPtrQueue.hpp libmaus2/parallel/AtomicPtrStack.hpp libmaus2/parallel/AtomicPtrHeap.hpp libmaus2/parallel/StdThread.hpp libmaus2/parallel/StdMutex.hpp libmaus2/parallel/StdSpinLock.hpp libmaus2/parallel/StdBasicSpinLock.hpp libmaus2/parallel/StdSemaphore.hpp libmaus2/parallel/StdTerminatableSynchronousHeap.hpp libmaus2/parallel/StdSynchronousHeap.hpp libmaus2/parallel/StdSynchronousQueue.hpp libmaus2/parallel/StdSynchronousConditionQueue.hpp libmaus2/parallel/StdTerminatableSynchronousQueue.hpp libmaus2/parallel/SynchronousCounter.hpp libmaus2/parallel/OMPNumThreadsScope.hpp libmaus2/parallel/LockedBool.hpp libmaus2/parallel/SimpleThreadPool.hpp libmaus2/parallel/SimpleThreadPoolInterfaceEnqueTermInterface.hpp libmaus2/parallel/SimpleThreadPoolInterface.hpp libmaus2/parallel/SimpleThreadPoolThread.hpp libmaus2/parallel/SimpleThreadPoolWorkPackageFreeList.hpp libmaus2/parallel/SimpleThreadWorkPackageComparator.hpp libmaus2/parallel/SimpleThreadWorkPackageDispatcher.hpp libmaus2/parallel/SimpleThreadWorkPackage.hpp libmaus2/parallel/LockedQueue.hpp libmaus2/parallel/NumCpus.hpp libmaus2/parallel/LockedFreeList.hpp libmaus2/parallel/LockedHeap.hpp libmaus2/parallel/LockedCounter.hpp libmaus2/parallel/LockedGrowingFreeList.hpp libmaus2/parallel/SimpleThreadPoolThreadId.hpp libmaus2/parallel/SimpleThreadPoolBase.hpp libmaus2/parallel/SimpleThreadPoolThreadIdNode.hpp libmaus2/parallel/SimpleThreadPoolThreadIdTree.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/parallel' /usr/bin/mkdir -p '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/parallel/threadpool' /usr/bin/install -c -m 644 libmaus2/parallel/threadpool/ThreadPool.hpp libmaus2/parallel/threadpool/LockedMap.hpp libmaus2/parallel/threadpool/ThreadWorkPackageData.hpp libmaus2/parallel/threadpool/ThreadWorkPackage.hpp libmaus2/parallel/threadpool/ThreadPoolDispatcher.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/parallel/threadpool' /usr/bin/mkdir -p '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/parallel/threadpool/bam' /usr/bin/install -c -m 644 libmaus2/parallel/threadpool/bam/BamParsePackageDataHandler.hpp libmaus2/parallel/threadpool/bam/BamParsePackageData.hpp libmaus2/parallel/threadpool/bam/BamParseContext.hpp libmaus2/parallel/threadpool/bam/ThreadPoolBamParseHandler.hpp libmaus2/parallel/threadpool/bam/BamParsePackageDataDispatcher.hpp libmaus2/parallel/threadpool/bam/ThreadPoolBamParseControl.hpp libmaus2/parallel/threadpool/bam/ThreadPoolBamParseTrivialReturnHandler.hpp libmaus2/parallel/threadpool/bam/BamHeaderSeqData.hpp libmaus2/parallel/threadpool/bam/BamParseOutputQueue.hpp libmaus2/parallel/threadpool/bam/BamParseHeaderData.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/parallel/threadpool/bam' /usr/bin/mkdir -p '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/parallel/threadpool/bgzf' /usr/bin/install -c -m 644 libmaus2/parallel/threadpool/bgzf/BgzfBlockSummary.hpp libmaus2/parallel/threadpool/bgzf/BgzfBlockInfo.hpp libmaus2/parallel/threadpool/bgzf/BgzfBlockInfoHandlerInterface.hpp libmaus2/parallel/threadpool/bgzf/ReadInfo.hpp libmaus2/parallel/threadpool/bgzf/BgzfInputThreadControl.hpp libmaus2/parallel/threadpool/bgzf/BgzfHeaderDecoderBase.hpp libmaus2/parallel/threadpool/bgzf/BgzfHeaderDecoder.hpp libmaus2/parallel/threadpool/bgzf/BgzfInputReadInterface.hpp libmaus2/parallel/threadpool/bgzf/ThreadPoolBGZFReadControl.hpp libmaus2/parallel/threadpool/bgzf/BgzfBlockInfoTrivialReturnHandler.hpp libmaus2/parallel/threadpool/bgzf/GenericBlock.hpp libmaus2/parallel/threadpool/bgzf/BgzfDataDecompressedInterface.hpp libmaus2/parallel/threadpool/bgzf/BgzfDecompressPackageData.hpp libmaus2/parallel/threadpool/bgzf/BgzfDecompressContext.hpp libmaus2/parallel/threadpool/bgzf/BgzfDecompressedBlock.hpp libmaus2/parallel/threadpool/bgzf/BgzfBlockInfoEnqueDecompressHandler.hpp libmaus2/parallel/threadpool/bgzf/BgzfDecompressPackageDataDispatcher.hpp libmaus2/parallel/threadpool/bgzf/ThreadPoolBGZFDecompressControl.hpp libmaus2/parallel/threadpool/bgzf/BgzfDataDecompressedTrivialReturnInterface.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/parallel/threadpool/bgzf' /usr/bin/mkdir -p '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/parallel/threadpool/cram' /usr/bin/install -c -m 644 libmaus2/parallel/threadpool/cram/CramEnqueuePackageDataHandler.hpp libmaus2/parallel/threadpool/cram/CramEnqueuePackageData.hpp libmaus2/parallel/threadpool/cram/CramEnqueuePackageDataDispatcher.hpp libmaus2/parallel/threadpool/cram/CramEncodingWorkPackageData.hpp libmaus2/parallel/threadpool/cram/CramEncodingWorkPackageDispatcher.hpp libmaus2/parallel/threadpool/cram/ThreadPoolCramEnqueueControl.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/parallel/threadpool/cram' /usr/bin/mkdir -p '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/parallel/threadpool/input' /usr/bin/install -c -m 644 libmaus2/parallel/threadpool/input/ThreadPoolInputBlock.hpp libmaus2/parallel/threadpool/input/ThreadPoolInputInfo.hpp libmaus2/parallel/threadpool/input/InputThreadCallbackInterface.hpp libmaus2/parallel/threadpool/input/InputThreadPackageData.hpp libmaus2/parallel/threadpool/input/InputThreadPackageDispatcher.hpp libmaus2/parallel/threadpool/input/InputThreadControl.hpp libmaus2/parallel/threadpool/input/InputThreadTrivialReturnInterface.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/parallel/threadpool/input' /usr/bin/mkdir -p '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/posix' /usr/bin/install -c -m 644 libmaus2/posix/PosixFunctions.hpp libmaus2/posix/PosixExecute.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/posix' /usr/bin/mkdir -p '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/protein/' /usr/bin/install -c -m 644 libmaus2/protein/Align.hpp libmaus2/protein/AlignGlobal.hpp libmaus2/protein/Blosum62.hpp libmaus2/protein/CodonMapper.hpp libmaus2/protein/ProteinAlignment.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/protein/' /usr/bin/mkdir -p '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/quantisation/' /usr/bin/install -c -m 644 libmaus2/quantisation/Quantiser.hpp libmaus2/quantisation/ClusterComputation.hpp libmaus2/quantisation/KmeansDataType.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/quantisation/' /usr/bin/mkdir -p '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/random' /usr/bin/install -c -m 644 libmaus2/random/Random.hpp libmaus2/random/UniformUnitRandom.hpp libmaus2/random/GaussianRandom.hpp libmaus2/random/DNABaseNoiseSpiker.hpp libmaus2/random/Poisson.hpp libmaus2/random/LogNormalRandom.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/random' /usr/bin/mkdir -p '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/rank' /usr/bin/install -c -m 644 libmaus2/rank/ChooseCache.hpp libmaus2/rank/CodeBase.hpp libmaus2/rank/DecodeCache.hpp libmaus2/rank/ERank222BAppend.hpp libmaus2/rank/ERank222B.hpp libmaus2/rank/ERank222BP.hpp libmaus2/rank/ERank222.hpp libmaus2/rank/ERank22B.hpp libmaus2/rank/ERank22.hpp libmaus2/rank/ERank2.hpp libmaus2/rank/ERank3C.hpp libmaus2/rank/ERank3.hpp libmaus2/rank/ERankBase.hpp libmaus2/rank/ERank.hpp libmaus2/rank/log2table.hpp libmaus2/rank/popcnt.hpp libmaus2/rank/RankTable.hpp libmaus2/rank/Proc01.hpp libmaus2/rank/EncodeCache.hpp libmaus2/rank/CacheLineRank.hpp libmaus2/rank/ImpCacheLineRank.hpp libmaus2/rank/ERank222BBase.hpp libmaus2/rank/ERank222BAppendDynamic.hpp libmaus2/rank/RunLengthBitVectorBase.hpp libmaus2/rank/RunLengthBitVector.hpp libmaus2/rank/RunLengthBitVectorGenerator.hpp libmaus2/rank/RunLengthBitVectorStream.hpp libmaus2/rank/RunLengthBitVectorGeneratorBase.hpp libmaus2/rank/RunLengthBitVectorGeneratorGammaBase.hpp libmaus2/rank/FastRank.hpp libmaus2/rank/BSwapBase.hpp libmaus2/rank/DNARank.hpp libmaus2/rank/DNARankKmerCache.hpp libmaus2/rank/DNARankBiDir.hpp libmaus2/rank/DNARankBiDirRange.hpp libmaus2/rank/DNARankMEM.hpp libmaus2/rank/DNARankMEMPosComparator.hpp libmaus2/rank/DNARankSMEMContext.hpp libmaus2/rank/DNARankSMEMComputation.hpp libmaus2/rank/DNARankGetPosition.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/rank' /usr/bin/install -c -m 644 libmaus2/rank/DNARankBiDirRangeSizeComparator.hpp libmaus2/rank/DNARankSuffixTreeNodeEnumeratorQueueElement.hpp libmaus2/rank/DNARankSuffixTreeNodeEnumerator.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/rank' /usr/bin/mkdir -p '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/rl' /usr/bin/install -c -m 644 libmaus2/rl/RLIndex.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/rl' /usr/bin/mkdir -p '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/rmq' /usr/bin/install -c -m 644 libmaus2/rmq/QuickDynamicRMQ.hpp libmaus2/rmq/CartesianTree.hpp libmaus2/rmq/RMMTree.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/rmq' /usr/bin/mkdir -p '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/select' /usr/bin/install -c -m 644 libmaus2/select/ESelect222B.hpp libmaus2/select/ESelectBase.hpp libmaus2/select/ESelectSimple.hpp libmaus2/select/ImpCacheLineSelectSupport.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/select' /usr/bin/mkdir -p '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/serialize/' /usr/bin/install -c -m 644 libmaus2/serialize/Serialize.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/serialize/' /usr/bin/mkdir -p '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/sorting' /usr/bin/install -c -m 644 libmaus2/sorting/sorting.hpp libmaus2/sorting/ParallelRadixSort.hpp libmaus2/sorting/SerialRadixSort64.hpp libmaus2/sorting/PairFileSorting.hpp libmaus2/sorting/InPlaceParallelSort.hpp libmaus2/sorting/MergingReadBack.hpp libmaus2/sorting/SortingBufferedOutputFile.hpp libmaus2/sorting/MergeStepBinSearchResult.hpp libmaus2/sorting/ParallelStableSort.hpp libmaus2/sorting/SemiExternalKeyTupleSort.hpp libmaus2/sorting/InterleavedRadixSort.hpp libmaus2/sorting/ParallelRunLengthRadixUnsort.hpp libmaus2/sorting/ParallelRunLengthRadixSort.hpp libmaus2/sorting/ParallelExternalRadixSort.hpp libmaus2/sorting/RankSearch.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/sorting' /usr/bin/mkdir -p '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/stacktrace' /usr/bin/install -c -m 644 libmaus2/stacktrace/StackTrace.hpp libmaus2/stacktrace/StackTraceBufferContainer.hpp libmaus2/stacktrace/StackLineTranslator.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/stacktrace' /usr/bin/mkdir -p '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/suffixsort' /usr/bin/install -c -m 644 libmaus2/suffixsort/SkewSuffixSort.hpp libmaus2/suffixsort/divsufsort.hpp libmaus2/suffixsort/CircularBwt.hpp libmaus2/suffixsort/CircularSuffixComparator.hpp libmaus2/suffixsort/BwtMergeTempFileNameSet.hpp libmaus2/suffixsort/BwtMergeZBlock.hpp libmaus2/suffixsort/BwtMergeTempFileNameSetVector.hpp libmaus2/suffixsort/BwtMergeBlockSortResult.hpp libmaus2/suffixsort/BwtMergeZBlockRequest.hpp libmaus2/suffixsort/BwtMergeZBlockRequestVector.hpp libmaus2/suffixsort/GapMergePacket.hpp libmaus2/suffixsort/BwtMergeEnumBase.hpp libmaus2/suffixsort/ByteInputTypes.hpp libmaus2/suffixsort/CompactInputTypes.hpp libmaus2/suffixsort/PacInputTypes.hpp libmaus2/suffixsort/PacTermInputTypes.hpp libmaus2/suffixsort/Utf8InputTypes.hpp libmaus2/suffixsort/Lz4InputTypes.hpp libmaus2/suffixsort/GapArrayByteDecoderBuffer.hpp libmaus2/suffixsort/GapArrayByte.hpp libmaus2/suffixsort/GapArrayByteDecoder.hpp libmaus2/suffixsort/GapArrayByteOverflowKeyAccessor.hpp libmaus2/suffixsort/BwtMergeBlockSortRequestBase.hpp libmaus2/suffixsort/BwtMergeBlockSortRequest.hpp libmaus2/suffixsort/SmallestRotation.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/suffixsort' /usr/bin/mkdir -p '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/suffixsort/bwtb3m' /usr/bin/install -c -m 644 libmaus2/suffixsort/bwtb3m/MergeStrategyMergeGapRequestQueryObject.hpp libmaus2/suffixsort/bwtb3m/MergeStrategyBlock.hpp libmaus2/suffixsort/bwtb3m/MergeStrategyBaseBlock.hpp libmaus2/suffixsort/bwtb3m/MergeStrategyMergeGapRequest.hpp libmaus2/suffixsort/bwtb3m/MergeStrategyMergeBlock.hpp libmaus2/suffixsort/bwtb3m/MergeStrategyMergeInternalBlock.hpp libmaus2/suffixsort/bwtb3m/MergeStrategyMergeInternalSmallBlock.hpp libmaus2/suffixsort/bwtb3m/MergeStrategyMergeExternalBlock.hpp libmaus2/suffixsort/bwtb3m/MergeStrategyConstruction.hpp libmaus2/suffixsort/bwtb3m/MergeTree.hpp libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp libmaus2/suffixsort/bwtb3m/BaseBlockSortThread.hpp libmaus2/suffixsort/bwtb3m/BaseBlockSorting.hpp libmaus2/suffixsort/bwtb3m/BwtMergeSortOptions.hpp libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.hpp libmaus2/suffixsort/bwtb3m/BwtComputeSSA.hpp libmaus2/suffixsort/bwtb3m/BwtSelectSSA.hpp libmaus2/suffixsort/bwtb3m/MergeStrategyMergeInput.hpp libmaus2/suffixsort/bwtb3m/InputTypesForward.hpp libmaus2/suffixsort/bwtb3m/BwtMergeIsaBase.hpp libmaus2/suffixsort/bwtb3m/PreIsaAdapter.hpp libmaus2/suffixsort/bwtb3m/GapArrayWrapper.hpp libmaus2/suffixsort/bwtb3m/BwtMergeIsaParallelBase.hpp libmaus2/suffixsort/bwtb3m/BwtMergeParallelGapFragMerge.hpp libmaus2/suffixsort/bwtb3m/BwtMergeComputeSampledSA.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/suffixsort/bwtb3m' /usr/bin/mkdir -p '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/suffixtree' /usr/bin/install -c -m 644 libmaus2/suffixtree/CompressedSuffixTree.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/suffixtree' /usr/bin/mkdir -p '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/sv' /usr/bin/install -c -m 644 libmaus2/sv/sv.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/sv' /usr/bin/mkdir -p '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/timing' /usr/bin/install -c -m 644 libmaus2/timing/RealTimeClock.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/timing' /usr/bin/mkdir -p '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/trie' /usr/bin/install -c -m 644 libmaus2/trie/TrieState.hpp libmaus2/trie/SimpleTrie.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/trie' /usr/bin/mkdir -p '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/types/' /usr/bin/install -c -m 644 libmaus2/types/types.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/types/' /usr/bin/mkdir -p '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/uint' /usr/bin/install -c -m 644 libmaus2/uint/uint.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/uint' /usr/bin/mkdir -p '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/util' /usr/bin/install -c -m 644 libmaus2/util/TabEntry.hpp libmaus2/util/stringFunctions.hpp libmaus2/util/BitList.hpp libmaus2/util/VarBitList.hpp libmaus2/util/VarList.hpp libmaus2/util/IntervalTree.hpp libmaus2/util/LookupIntervalTree.hpp libmaus2/util/StringSerialisation.hpp libmaus2/util/NumberSerialisation.hpp libmaus2/util/GetFileSize.hpp libmaus2/util/TempFileNameGenerator.hpp libmaus2/util/TempFileNameGeneratorState.hpp libmaus2/util/BitsPerNum.hpp libmaus2/util/ArgInfo.hpp libmaus2/util/Concat.hpp libmaus2/util/ConcatRequest.hpp libmaus2/util/CompactNumberArray.hpp libmaus2/util/ArrayIterator.hpp libmaus2/util/OffsetArray.hpp libmaus2/util/Terminal.hpp libmaus2/util/nstat.hpp libmaus2/util/WriteableString.hpp libmaus2/util/MoveStack.hpp libmaus2/util/LongestIncreasingSubsequence.hpp libmaus2/util/utf8.hpp libmaus2/util/Histogram.hpp libmaus2/util/IncreasingList.hpp libmaus2/util/GenericSerialisation.hpp libmaus2/util/ConsoleColor.hpp libmaus2/util/iterator.hpp libmaus2/util/SaturatingCounter.hpp libmaus2/util/MemUsage.hpp libmaus2/util/unordered_set.hpp libmaus2/util/unordered_map.hpp libmaus2/util/ReverseByteOrder.hpp libmaus2/util/SimpleBloomFilter.hpp libmaus2/util/SimpleCountingHash.hpp libmaus2/util/SimpleHashMap.hpp libmaus2/util/SimpleHashSet.hpp libmaus2/util/OutputFileNameTools.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/util' /usr/bin/install -c -m 644 libmaus2/util/LELoad.hpp libmaus2/util/GetCObject.hpp libmaus2/util/PutObject.hpp libmaus2/util/PutObjectReverse.hpp libmaus2/util/CountPutObject.hpp libmaus2/util/CountPutIterator.hpp libmaus2/util/AlphaDigitTable.hpp libmaus2/util/AlphaTable.hpp libmaus2/util/DigitTable.hpp libmaus2/util/TempFileRemovalContainer.hpp libmaus2/util/DynamicLoading.hpp libmaus2/util/Object.hpp libmaus2/util/KMP.hpp libmaus2/util/NumberMapSerialisation.hpp libmaus2/util/Utf8BlockIndex.hpp libmaus2/util/Utf8DecoderBuffer.hpp libmaus2/util/Utf8String.hpp libmaus2/util/UnsignedCharVariant.hpp libmaus2/util/CountGetObject.hpp libmaus2/util/HistogramSet.hpp libmaus2/util/GenericIntervalTree.hpp libmaus2/util/OctetString.hpp libmaus2/util/Utf8StringPairAdapter.hpp libmaus2/util/Utf8BlockIndexDecoder.hpp libmaus2/util/Utf8DecoderWrapper.hpp libmaus2/util/TempFileContainer.hpp libmaus2/util/FileTempFileContainer.hpp libmaus2/util/MemTempFileContainer.hpp libmaus2/util/ImpCompactNumberArray.hpp libmaus2/util/ContainerGetObject.hpp libmaus2/util/PushBuffer.hpp libmaus2/util/SuccinctBorderArray.hpp libmaus2/util/LineAccessor.hpp libmaus2/util/StringMapCompare.hpp libmaus2/util/FreeList.hpp libmaus2/util/ToUpperTable.hpp libmaus2/util/BorderArray.hpp libmaus2/util/SimpleHashMapConstants.hpp libmaus2/util/SimpleHashMapKeyPrint.hpp libmaus2/util/GrowingFreeList.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/util' /usr/bin/install -c -m 644 libmaus2/util/SimpleHashMapHashCompute.hpp libmaus2/util/SimpleHashMapInsDel.hpp libmaus2/util/SimpleHashMapNumberCast.hpp libmaus2/util/SimpleHashSetInsDel.hpp libmaus2/util/LineBuffer.hpp libmaus2/util/UnsignedIntegerIndexIterator.hpp libmaus2/util/FiniteSizeHeap.hpp libmaus2/util/UnitNum.hpp libmaus2/util/NotDigitOrTermTable.hpp libmaus2/util/ArgInfoParseBase.hpp libmaus2/util/ReverseAdapter.hpp libmaus2/util/MemoryStatistics.hpp libmaus2/util/LongestIncreasingSubsequenceExtendedResult.hpp libmaus2/util/ArgParser.hpp libmaus2/util/PrefixSums.hpp libmaus2/util/NumberToString.hpp libmaus2/util/SplayTree.hpp libmaus2/util/Queue.hpp libmaus2/util/ContainerElementFreeList.hpp libmaus2/util/StringAllocTypes.hpp libmaus2/util/SimpleQueue.hpp libmaus2/util/SimpleHashMapDisplaceMaskFunction.hpp libmaus2/util/Enumerator.hpp libmaus2/util/LocalTempContainer.hpp libmaus2/util/ContainerDescription.hpp libmaus2/util/ContainerDescriptionList.hpp libmaus2/util/U.hpp libmaus2/util/AutoArrayCharBaseTypeInfo.hpp libmaus2/util/AutoArrayCharBaseAllocator.hpp libmaus2/util/FileEnumerator.hpp libmaus2/util/PathTools.hpp libmaus2/util/Base64.hpp libmaus2/util/AutoArrayUInt8TBaseAllocator.hpp libmaus2/util/AutoArrayUInt8TBaseTypeInfo.hpp libmaus2/util/DirectoryStructure.hpp libmaus2/util/StreamGetObject.hpp libmaus2/util/SerialiseHelper.hpp libmaus2/util/atomic_shared_ptr.hpp libmaus2/util/AtomicArray.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/util' /usr/bin/mkdir -p '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/vcf' /usr/bin/install -c -m 644 libmaus2/vcf/VCFParser.hpp libmaus2/vcf/VCFSortEntry.hpp libmaus2/vcf/VCFSorter.hpp libmaus2/vcf/TabixIndex.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/vcf' /usr/bin/mkdir -p '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/vep' /usr/bin/install -c -m 644 libmaus2/vep/VEPCoordinate.hpp libmaus2/vep/VEPParser.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/vep' /usr/bin/mkdir -p '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/wavelet' /usr/bin/install -c -m 644 libmaus2/wavelet/toWaveletTreeBits.hpp libmaus2/wavelet/WaveletTree.hpp libmaus2/wavelet/HuffmanWaveletTree.hpp libmaus2/wavelet/DynamicHuffmanWaveletTree.hpp libmaus2/wavelet/DynamicWaveletTree.hpp libmaus2/wavelet/ExternalWaveletGenerator.hpp libmaus2/wavelet/ImpWaveletTree.hpp libmaus2/wavelet/ImpExternalWaveletGenerator.hpp libmaus2/wavelet/ImpExternalWaveletGeneratorHuffmanParallel.hpp libmaus2/wavelet/ImpExternalWaveletGeneratorHuffman.hpp libmaus2/wavelet/ImpHuffmanWaveletTree.hpp libmaus2/wavelet/Utf8ToImpHuffmanWaveletTree.hpp libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp libmaus2/wavelet/ImpCompactHuffmanWaveletTree.hpp libmaus2/wavelet/ImpExternalWaveletGeneratorCompactHuffman.hpp libmaus2/wavelet/ImpExternalWaveletGeneratorCompactHuffmanParallel.hpp libmaus2/wavelet/RlToHwtBase.hpp libmaus2/wavelet/RlToHwtTermRequest.hpp '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/include/libmaus2/wavelet' make[3]: Leaving directory '/build/reproducible-path/libmaus2-2.0.813+ds/src' make[2]: Leaving directory '/build/reproducible-path/libmaus2-2.0.813+ds/src' make[2]: Entering directory '/build/reproducible-path/libmaus2-2.0.813+ds' make[3]: Entering directory '/build/reproducible-path/libmaus2-2.0.813+ds' make[3]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/share/doc/libmaus2' /usr/bin/install -c -m 644 ChangeLog '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/share/doc/libmaus2' /usr/bin/mkdir -p '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/powerpc64le-linux-gnu/pkgconfig' /usr/bin/install -c -m 644 libmaus2.pc '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/powerpc64le-linux-gnu/pkgconfig' make install-data-hook make[4]: Entering directory '/build/reproducible-path/libmaus2-2.0.813+ds' cd /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/share/doc/libmaus2 && mv ChangeLog changelog && gzip -f -n -9 changelog make[4]: Leaving directory '/build/reproducible-path/libmaus2-2.0.813+ds' make[3]: Leaving directory '/build/reproducible-path/libmaus2-2.0.813+ds' make[2]: Leaving directory '/build/reproducible-path/libmaus2-2.0.813+ds' make[1]: Leaving directory '/build/reproducible-path/libmaus2-2.0.813+ds' chmod -R u\+rwX /build/reproducible-path/libmaus2-2.0.813\+ds/debian/tmp debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/libmaus2-2.0.813+ds' dh_install # following override suggestion from suggestion of Andreas to Michael # to overcome d-shlibmove bug on Jan 4, 2019 d-shlibmove --commit \ --multiarch \ --devunversioned \ --exclude-la \ --override s/libdeflate0-dev/libdeflate-dev/ \ --override s/libmaus2_.*-dev/libmaus2-dev/ \ --override 's/libnettle.*-dev/nettle-dev/' \ --override 's/libgpgme.*-dev/libgpgme-dev/' \ --movedev debian/tmp/usr/include/* usr/include \ --movedev "debian/tmp/usr/lib/*/pkgconfig/*.pc" \ usr/lib/powerpc64le-linux-gnu/pkgconfig \ debian/tmp/usr/lib/*/*.so Library package automatic movement utility --> libgmp-dev package exists. --> libgpgme-dev package exists. --> libmaus2-dev package from same source package. --> nettle-dev package exists. --> zlib1g-dev package exists. set -e install -d -m 755 debian/libmaus2-dev/usr/lib/powerpc64le-linux-gnu install -d -m 755 debian/libmaus2-2/usr/lib/powerpc64le-linux-gnu mv debian/tmp/usr/lib/powerpc64le-linux-gnu/libmaus2.a debian/libmaus2-dev/usr/lib/powerpc64le-linux-gnu mv debian/tmp/usr/lib/powerpc64le-linux-gnu/libmaus2.so debian/libmaus2-dev/usr/lib/powerpc64le-linux-gnu mv /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/powerpc64le-linux-gnu/libmaus2.so.2 debian/libmaus2-2/usr/lib/powerpc64le-linux-gnu mv /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/powerpc64le-linux-gnu/libmaus2.so.2.0.813 debian/libmaus2-2/usr/lib/powerpc64le-linux-gnu PKGDEV=libmaus2-dev PKGSHL=libmaus2-2 install -d -m 755 debian/libmaus2-dev/usr/include mv debian/tmp/usr/include/libmaus2 debian/libmaus2-dev/usr/include install -d -m 755 debian/libmaus2-dev/usr/lib/powerpc64le-linux-gnu/pkgconfig mv debian/tmp/usr/lib/*/pkgconfig/*.pc debian/libmaus2-dev/usr/lib/powerpc64le-linux-gnu/pkgconfig # Remove unneeded options from *.pc files find debian -name "*.pc" \ -exec sed -i -e 's/-Wdate-time *//' \ -e 's/-D_FORTIFY_SOURCE=2 *//' \{\} \; # avoid noise from dh-missing by deleting unneeded files find debian/tmp -type f -name "*.la" -delete # Changelog is installed via dh_installchangelogs rm -f debian/tmp/usr/share/doc/libmaus2/changelog.gz # Do not ship unusable static library find -type f -name libmaus2_simd_align_128.a -delete make[1]: Leaving directory '/build/reproducible-path/libmaus2-2.0.813+ds' dh_installdocs -a debian/rules override_dh_installchangelogs make[1]: Entering directory '/build/reproducible-path/libmaus2-2.0.813+ds' dh_installchangelogs ChangeLog make[1]: Leaving directory '/build/reproducible-path/libmaus2-2.0.813+ds' dh_lintian -a dh_perl -a dh_link -a dh_missing -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_fixperms -a dh_strip_nondeterminism -a dh_compress -a dh_installdeb -a dh_computeautosubstvars -a debian/rules override_dh_gencontrol make[1]: Entering directory '/build/reproducible-path/libmaus2-2.0.813+ds' dh_gencontrol -- -Vlibsecrecy:Built-Using="libsecrecy (= 0.0.5+ds-5), " dpkg-gencontrol: warning: Depends field of package libmaus2-2: substitution variable ${misc:Depends} used, but is not defined dpkg-gencontrol: warning: Depends field of package libmaus2-dev: substitution variable ${shlibs:Depends} used, but is not defined dpkg-gencontrol: warning: Depends field of package libmaus2-dev: substitution variable ${misc:Depends} used, but is not defined make[1]: Leaving directory '/build/reproducible-path/libmaus2-2.0.813+ds' dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'libmaus2-2' in '../libmaus2-2_2.0.813+ds-6_ppc64el.deb'. dpkg-deb: building package 'libmaus2-2-dbgsym' in '../libmaus2-2-dbgsym_2.0.813+ds-6_ppc64el.deb'. dpkg-deb: building package 'libmaus2-dev' in '../libmaus2-dev_2.0.813+ds-6_ppc64el.deb'. dpkg-genbuildinfo --build=any -O../libmaus2_2.0.813+ds-6_ppc64el.buildinfo dpkg-genchanges --build=any -O../libmaus2_2.0.813+ds-6_ppc64el.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2026-09-02T18:18:56Z +------------------------------------------------------------------------------+ | Finished Timed Build Commands Wed, 02 Sep 2026 18:18:56 +0000 | +------------------------------------------------------------------------------+ rm -Rf /build/reproducible-path/libmaus2-2.0.813+ds/ ---------------------------------------------------- I: Finished running 'rm -Rf /build/reproducible-path/libmaus2-2.0.813+ds/'. Finished processing commands. -------------------------------------------------------------------------------- Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes Wed, 02 Sep 2026 18:18:57 +0000 | +------------------------------------------------------------------------------+ libmaus2_2.0.813+ds-6_ppc64el.changes: -------------------------------------- Format: 1.8 Date: Wed, 05 Aug 2026 21:59:48 +0200 Source: libmaus2 Binary: libmaus2-2 libmaus2-2-dbgsym libmaus2-dev Built-For-Profiles: cross nocheck Architecture: ppc64el Version: 2.0.813+ds-6 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Étienne Mollier Description: libmaus2-2 - collection of data structures and algorithms for biobambam libmaus2-dev - collection of data structures and algorithms for biobambam (devel Closes: 1143671 Changes: libmaus2 (2.0.813+ds-6) unstable; urgency=medium . [ Andreas Tille ] * Replace pkg-config with pkgconf in Build-Depends . [ Étienne Mollier ] * d/watch: switch to Template: Gitlab. This repairs the scanning, which was broken by the initial attempt to make use of the Mode: Gitlab. * unlock-stdc++.patch: new: stop passing -std=c++17. This change fixes a build failure with gcc-16. (Closes: #1143671) * d/rules: do not ship libmaus2_simd_align_128.a. This library does not have a code section, likely due to shipping alternate implementations of a single function for variour levels of SIMD support. * d/control: drop redundant Priority: optional. * d/control: declare compliance to standards version 4.7.4. * d/control: bump to debhelper-compat 14. * d/*lintian-overrides: override shared-library-lacks-prerequisites. Checksums-Sha1: 7be08218abcccb3a9edd8f63a973859b4ab5b93c 89899204 libmaus2-2-dbgsym_2.0.813+ds-6_ppc64el.deb fb0781992f7e4366038595f5e9eb0c8e315426cc 1668628 libmaus2-2_2.0.813+ds-6_ppc64el.deb d1cf1ff031e68a1475f92132f9ab84749ad01d0c 4723800 libmaus2-dev_2.0.813+ds-6_ppc64el.deb 816e99d7cb9c07faf2fc9c4d29eb92f692cc3b4b 6495 libmaus2_2.0.813+ds-6_ppc64el.buildinfo Checksums-Sha256: 389590bcc3c761b16b9c2f47a70eaa41b80b00a026ad86804bd2c07ed591bcf9 89899204 libmaus2-2-dbgsym_2.0.813+ds-6_ppc64el.deb bb4682627a73feda2878b3a730d4f200b805bcf7ce6a93972193edc54455238c 1668628 libmaus2-2_2.0.813+ds-6_ppc64el.deb 69b83e2961cf80a3d99b5d63b54bcf9d67cb565c6e9a34650d57f1288f9f89cc 4723800 libmaus2-dev_2.0.813+ds-6_ppc64el.deb b2d23a808692132660ae44295ae12f71bd1c32198566c798db34d76b1f535ada 6495 libmaus2_2.0.813+ds-6_ppc64el.buildinfo Files: 2ac6c5c7671a0a15c0a4425df4263ca7 89899204 debug optional libmaus2-2-dbgsym_2.0.813+ds-6_ppc64el.deb a1b05b132e6c26000a53072237f2ff35 1668628 libs optional libmaus2-2_2.0.813+ds-6_ppc64el.deb a1d21c5bbc44b544b41517e4aca14727 4723800 libdevel optional libmaus2-dev_2.0.813+ds-6_ppc64el.deb 3b7deaaa9a0613dae4af0a204b543d4e 6495 science optional libmaus2_2.0.813+ds-6_ppc64el.buildinfo +------------------------------------------------------------------------------+ | Buildinfo Wed, 02 Sep 2026 18:18:57 +0000 | +------------------------------------------------------------------------------+ Format: 1.0 Source: libmaus2 Binary: libmaus2-2 libmaus2-2-dbgsym libmaus2-dev Architecture: ppc64el Version: 2.0.813+ds-6 Checksums-Md5: 2ac6c5c7671a0a15c0a4425df4263ca7 89899204 libmaus2-2-dbgsym_2.0.813+ds-6_ppc64el.deb a1b05b132e6c26000a53072237f2ff35 1668628 libmaus2-2_2.0.813+ds-6_ppc64el.deb a1d21c5bbc44b544b41517e4aca14727 4723800 libmaus2-dev_2.0.813+ds-6_ppc64el.deb Checksums-Sha1: 7be08218abcccb3a9edd8f63a973859b4ab5b93c 89899204 libmaus2-2-dbgsym_2.0.813+ds-6_ppc64el.deb fb0781992f7e4366038595f5e9eb0c8e315426cc 1668628 libmaus2-2_2.0.813+ds-6_ppc64el.deb d1cf1ff031e68a1475f92132f9ab84749ad01d0c 4723800 libmaus2-dev_2.0.813+ds-6_ppc64el.deb Checksums-Sha256: 389590bcc3c761b16b9c2f47a70eaa41b80b00a026ad86804bd2c07ed591bcf9 89899204 libmaus2-2-dbgsym_2.0.813+ds-6_ppc64el.deb bb4682627a73feda2878b3a730d4f200b805bcf7ce6a93972193edc54455238c 1668628 libmaus2-2_2.0.813+ds-6_ppc64el.deb 69b83e2961cf80a3d99b5d63b54bcf9d67cb565c6e9a34650d57f1288f9f89cc 4723800 libmaus2-dev_2.0.813+ds-6_ppc64el.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Wed, 02 Sep 2026 18:18:55 +0000 Build-Path: /build/reproducible-path/libmaus2-2.0.813+ds Installed-Build-Depends: apt (= 3.3.3), autoconf (= 2.73-2), automake (= 1:1.18.1-4), autopoint (= 1.0-3), autotools-dev (= 20240727.1+nmu1), base-files (= 14.2), base-passwd (= 3.6.8), bash (= 5.3-3+b1), binutils (= 2.47-2), binutils-common (= 2.47-2), binutils-x86-64-linux-gnu (= 2.47-2), bsdextrautils (= 2.42.2-4), build-essential (= 12.12), bzip2 (= 1.0.8-6+b2), coreutils (= 9.10-1), cpp (= 4:16.1.0-3), cpp-16 (= 16.2.0-1), cpp-16-x86-64-linux-gnu (= 16.2.0-1), cpp-x86-64-linux-gnu (= 4:16.1.0-3), d-shlibs (= 0.109), dash (= 0.5.12-12), debconf (= 1.5.92), debhelper (= 14.3), debian-archive-keyring (= 2025.1), debianutils (= 5.24), dh-autoreconf (= 22), dh-strip-nondeterminism (= 1.15.1-1), diffutils (= 1:3.12-1), dirmngr (= 2.4.9-7+b1), dpkg (= 1.23.7), dpkg-dev (= 1.23.7), dwz (= 0.17-1), file (= 1:5.47-4), findutils (= 4.11.0-2), g++ (= 4:16.1.0-3), g++-16 (= 16.2.0-1), g++-16-x86-64-linux-gnu (= 16.2.0-1), g++-x86-64-linux-gnu (= 4:16.1.0-3), gcc (= 4:16.1.0-3), gcc-16 (= 16.2.0-1), gcc-16-base (= 16.2.0-1), gcc-16-x86-64-linux-gnu (= 16.2.0-1), gcc-x86-64-linux-gnu (= 4:16.1.0-3), gettext (= 1.0-3), gettext-base (= 1.0-3), gnupg (= 2.4.9-7), gnupg-l10n (= 2.4.9-7), gpg (= 2.4.9-7+b1), gpg-agent (= 2.4.9-7+b1), gpgconf (= 2.4.9-7+b1), gpgsm (= 2.4.9-7+b1), grep (= 3.12-1), groff-base (= 1.24.1-1), gzip (= 1.14-1), hostname (= 3.25), init-system-helpers (= 1.69+nmu1), intltool-debian (= 0.35.0+20060710.6), libacl1 (= 2.4.0-1), libapt-pkg7.0 (= 3.3.3), libarchive-zip-perl (= 1.68-1), libasan8 (= 16.2.0-1), libassuan-dev (= 3.0.2-2+b2), libassuan9 (= 3.0.2-2+b2), libatomic1 (= 16.2.0-1), libattr1 (= 1:2.6.0-1), libaudit-common (= 1:4.1.2-1), libaudit1 (= 1:4.1.2-1+b1), libbinutils (= 2.47-2), libblkid1 (= 2.42.2-4), libboost-atomic-dev (= 1.90.0.2+nmu1), libboost-atomic1.90-dev (= 1.90.0-6.1+b1), libboost-atomic1.90.0 (= 1.90.0-6.1+b1), libboost1.90-dev (= 1.90.0-6.1+b1), libbz2-1.0 (= 1.0.8-6+b2), libc-bin (= 2.43-4), libc-dev-bin (= 2.43-4), libc-gconv-modules-extra (= 2.43-4), libc6 (= 2.43-4), libc6-dev (= 2.43-4), libcap-ng0 (= 0.9.5-1), libcc1-0 (= 16.2.0-1), libcrypt1 (= 1:4.5.2+20251210-1), libctf-nobfd0 (= 2.47-2), libctf0 (= 2.47-2), libdb5.3t64 (= 5.3.28+dfsg2-11+b1), libdebconfclient0 (= 0.283), libdebhelper-perl (= 14.3), libdpkg-perl (= 1.23.7), libelf1t64 (= 0.196-1), libffi8 (= 3.8.0-2), libfile-stripnondeterminism-perl (= 1.15.1-1), libgcc-16-dev (= 16.2.0-1), libgcc-s1 (= 16.2.0-1), libgcrypt20 (= 1.12.2-1), libgdbm-compat4t64 (= 1.26-1+b2), libgdbm6t64 (= 1.26-1+b2), libgmp-dev (= 2:6.3.0+dfsg-5+b2), libgmp10 (= 2:6.3.0+dfsg-5+b2), libgmpxx4ldbl (= 2:6.3.0+dfsg-5+b2), libgnutls30t64 (= 3.8.13-1), libgomp1 (= 16.2.0-1), libgpg-error-dev (= 1.61-5), libgpg-error0 (= 1.61-5), libgpgme-dev (= 2.1.2-1), libgpgme45 (= 2.1.2-1), libgprofng0 (= 2.47-2), libhogweed6t64 (= 3.10.2-1+b1), libhwasan0 (= 16.2.0-1), libidn2-0 (= 2.3.8-5), libisl23 (= 0.28-1), libitm1 (= 16.2.0-1), libjansson4 (= 2.15.1-1), libksba8 (= 1.8.1-1), libldap2 (= 2.6.14+dfsg-2), liblsan0 (= 16.2.0-1), liblz4-1 (= 1.10.0-10), liblzma5 (= 5.8.3-1), libmagic-mgc (= 1:5.47-4), libmagic1t64 (= 1:5.47-4), libmd0 (= 1.2.0-2), libmount1 (= 2.42.2-4), libmpc3 (= 1.3.1-3), libmpfr6 (= 4.2.2-3), libncursesw6 (= 6.6+20260608-2), libnettle8t64 (= 3.10.2-1+b1), libnpth0t64 (= 1.8-3+b2), libp11-kit0 (= 0.26.5-1), libpam-modules (= 1.7.0-8), libpam-modules-bin (= 1.7.0-8), libpam-runtime (= 1.7.0-8), libpam0g (= 1.7.0-8), libpcre2-8-0 (= 10.48-2), libperl5.42 (= 5.42.3-1), libpipeline1 (= 1.5.8-3), libpkgconf7 (= 2.5.1-4), libquadmath0 (= 16.2.0-1), libreadline8t64 (= 8.3-4), libsasl2-2 (= 2.1.28+dfsg1-11), libsasl2-modules-db (= 2.1.28+dfsg1-11), libseccomp2 (= 2.6.1-1), libsecrecy-dev (= 0.0.5+ds-5), libselinux1 (= 3.11-2), libsframe3 (= 2.47-2), libsmartcols1 (= 2.42.2-4), libsqlite3-0 (= 3.53.4-2), libssl3t64 (= 3.6.4-1), libstdc++-16-dev (= 16.2.0-1), libstdc++6 (= 16.2.0-1), libsystemd0 (= 262~rc1-2), libtasn1-6 (= 4.21.0-2+b1), libtinfo6 (= 6.6+20260608-2), libtool (= 2.6.2-2), libtsan2 (= 16.2.0-1), libubsan1 (= 16.2.0-1), libuchardet0 (= 0.0.8-2+b2), libudev1 (= 262~rc1-2), libunistring5 (= 1.4.2-1), libuuid1 (= 2.42.2-4), libxml2-16 (= 2.15.3+dfsg-1+b1), libxxhash0 (= 0.8.3-2+b2), libzstd1 (= 1.5.7+dfsg-4), linux-libc-dev (= 7.1.12-1), m4 (= 1.4.21-1), make (= 4.4.1-3), man-db (= 2.13.1-1), mawk (= 1.3.4.20260302-1), ncurses-base (= 6.6+20260608-2), ncurses-bin (= 6.6+20260608-2), nettle-dev (= 3.10.2-1+b1), openssl-provider-legacy (= 3.6.4-1), patch (= 2.8-2), perl (= 5.42.3-1), perl-base (= 5.42.3-1), perl-modules-5.42 (= 5.42.3-1), pinentry-curses (= 1.3.3-3), pkgconf (= 2.5.1-4), pkgconf-bin (= 2.5.1-4), po-debconf (= 1.0.22), readline-common (= 8.3-4), sed (= 4.9-3), sensible-utils (= 0.0.26), sqv (= 1.4.0-1), sysvinit-utils (= 3.18-1), tar (= 1.35+dfsg-5), util-linux (= 2.42.2-4), xz-utils (= 5.8.3-1), zlib1g (= 1:1.3.dfsg+really1.3.2-3), zlib1g-dev (= 1:1.3.dfsg+really1.3.2-3) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="C.UTF-8" LC_COLLATE="C.UTF-8" LC_CTYPE="C.UTF-8" SOURCE_DATE_EPOCH="1785959988" +------------------------------------------------------------------------------+ | Package contents Wed, 02 Sep 2026 18:18:57 +0000 | +------------------------------------------------------------------------------+ libmaus2-2-dbgsym_2.0.813+ds-6_ppc64el.deb ------------------------------------------ new Debian package, version 2.0. size 89899204 bytes: control archive=1024 bytes. 780 bytes, 13 lines control 1060 bytes, 10 lines md5sums Package: libmaus2-2-dbgsym Source: libmaus2 Version: 2.0.813+ds-6 Auto-Built-Package: debug-symbols Architecture: ppc64el Maintainer: Debian Med Packaging Team Installed-Size: 90006 Depends: libmaus2-2 (= 2.0.813+ds-6) Section: debug Priority: optional Multi-Arch: same Description: debug symbols for libmaus2-2 Build-Ids: 0c2be2e8472e180673606354aa26674d515c64da 10eaf36535c95211729efa21d9cac2bb61aca674 1b4662035369a655816cbaa4ec9a8c7b4499d1c5 3142145b5a5ef7e7df131877d79bffbcab49a821 328dcdb124b61e45c5571b8687ec04d90b10bdda 4878e5642983ed78b56dc87c3b408e10073d7118 6476fbdcc9e6fbdf028134bc50b55044afea31fc 7e60759d6e3a248a1825a93d9addf3353e7eebf9 87aa8740ddd57190537093cbc7b34fabbb6024dd e2de29a011be1fd79c6b1d31a2cd4df02029abb7 drwxr-xr-x root/root 0 2026-08-05 19:59 ./ drwxr-xr-x root/root 0 2026-08-05 19:59 ./usr/ drwxr-xr-x root/root 0 2026-08-05 19:59 ./usr/lib/ drwxr-xr-x root/root 0 2026-08-05 19:59 ./usr/lib/debug/ drwxr-xr-x root/root 0 2026-08-05 19:59 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2026-08-05 19:59 ./usr/lib/debug/.build-id/0c/ -rw-r--r-- root/root 144944 2026-08-05 19:59 ./usr/lib/debug/.build-id/0c/2be2e8472e180673606354aa26674d515c64da.debug drwxr-xr-x root/root 0 2026-08-05 19:59 ./usr/lib/debug/.build-id/10/ -rw-r--r-- root/root 64168 2026-08-05 19:59 ./usr/lib/debug/.build-id/10/eaf36535c95211729efa21d9cac2bb61aca674.debug drwxr-xr-x root/root 0 2026-08-05 19:59 ./usr/lib/debug/.build-id/1b/ -rw-r--r-- root/root 38464 2026-08-05 19:59 ./usr/lib/debug/.build-id/1b/4662035369a655816cbaa4ec9a8c7b4499d1c5.debug drwxr-xr-x root/root 0 2026-08-05 19:59 ./usr/lib/debug/.build-id/31/ -rw-r--r-- root/root 197048 2026-08-05 19:59 ./usr/lib/debug/.build-id/31/42145b5a5ef7e7df131877d79bffbcab49a821.debug drwxr-xr-x root/root 0 2026-08-05 19:59 ./usr/lib/debug/.build-id/32/ -rw-r--r-- root/root 28040 2026-08-05 19:59 ./usr/lib/debug/.build-id/32/8dcdb124b61e45c5571b8687ec04d90b10bdda.debug drwxr-xr-x root/root 0 2026-08-05 19:59 ./usr/lib/debug/.build-id/48/ -rw-r--r-- root/root 6768 2026-08-05 19:59 ./usr/lib/debug/.build-id/48/78e5642983ed78b56dc87c3b408e10073d7118.debug drwxr-xr-x root/root 0 2026-08-05 19:59 ./usr/lib/debug/.build-id/64/ -rw-r--r-- root/root 245440 2026-08-05 19:59 ./usr/lib/debug/.build-id/64/76fbdcc9e6fbdf028134bc50b55044afea31fc.debug drwxr-xr-x root/root 0 2026-08-05 19:59 ./usr/lib/debug/.build-id/7e/ -rw-r--r-- root/root 85984 2026-08-05 19:59 ./usr/lib/debug/.build-id/7e/60759d6e3a248a1825a93d9addf3353e7eebf9.debug drwxr-xr-x root/root 0 2026-08-05 19:59 ./usr/lib/debug/.build-id/87/ -rw-r--r-- root/root 196040 2026-08-05 19:59 ./usr/lib/debug/.build-id/87/aa8740ddd57190537093cbc7b34fabbb6024dd.debug drwxr-xr-x root/root 0 2026-08-05 19:59 ./usr/lib/debug/.build-id/e2/ -rw-r--r-- root/root 91135160 2026-08-05 19:59 ./usr/lib/debug/.build-id/e2/de29a011be1fd79c6b1d31a2cd4df02029abb7.debug drwxr-xr-x root/root 0 2026-08-05 19:59 ./usr/share/ drwxr-xr-x root/root 0 2026-08-05 19:59 ./usr/share/doc/ lrwxrwxrwx root/root 0 2026-08-05 19:59 ./usr/share/doc/libmaus2-2-dbgsym -> libmaus2-2 libmaus2-2_2.0.813+ds-6_ppc64el.deb ----------------------------------- new Debian package, version 2.0. size 1668628 bytes: control archive=1440 bytes. 1008 bytes, 23 lines control 1223 bytes, 14 lines md5sums 470 bytes, 10 lines shlibs 65 bytes, 2 lines triggers Package: libmaus2-2 Source: libmaus2 Version: 2.0.813+ds-6 Architecture: ppc64el Maintainer: Debian Med Packaging Team Installed-Size: 10089 Depends: libc6 (>= 2.38), libgcc-s1 (>= 3.0), libgmp10 (>= 2:6.3.0+dfsg), libgomp1 (>= 6), libgpgme45 (>= 1.2.0), libnettle8t64, libstdc++6 (>= 14), zlib1g (>= 1:1.2.0) Suggests: secrecy Breaks: biobambam2 (<< 2.0.183~) Built-Using: libsecrecy (= 0.0.5+ds-5) Section: libs Priority: optional Multi-Arch: same Homepage: https://gitlab.com/german.tischler/libmaus2 Description: collection of data structures and algorithms for biobambam Libmaus2 is a collection of data structures and algorithms. It contains . * I/O classes (single byte and UTF-8) * bitio classes (input, output and various forms of bit level manipulation) * text indexing classes (suffix and LCP array, fulltext and minute (FM), ...) * BAM sequence alignment files input/output (simple and collating) . and many lower level support classes. drwxr-xr-x root/root 0 2026-08-05 19:59 ./ drwxr-xr-x root/root 0 2026-08-05 19:59 ./usr/ drwxr-xr-x root/root 0 2026-08-05 19:59 ./usr/lib/ drwxr-xr-x root/root 0 2026-08-05 19:59 ./usr/lib/powerpc64le-linux-gnu/ lrwxrwxrwx root/root 0 2026-08-05 19:59 ./usr/lib/powerpc64le-linux-gnu/libmaus2.so.2 -> libmaus2.so.2.0.813 -rw-r--r-- root/root 9636832 2026-08-05 19:59 ./usr/lib/powerpc64le-linux-gnu/libmaus2.so.2.0.813 lrwxrwxrwx root/root 0 2026-08-05 19:59 ./usr/lib/powerpc64le-linux-gnu/libmaus2_arch.so.2 -> libmaus2_arch.so.2.0.813 -rw-r--r-- root/root 67600 2026-08-05 19:59 ./usr/lib/powerpc64le-linux-gnu/libmaus2_arch.so.2.0.813 lrwxrwxrwx root/root 0 2026-08-05 19:59 ./usr/lib/powerpc64le-linux-gnu/libmaus2_autoarray.so.2 -> libmaus2_autoarray.so.2.0.813 -rw-r--r-- root/root 67536 2026-08-05 19:59 ./usr/lib/powerpc64le-linux-gnu/libmaus2_autoarray.so.2.0.813 lrwxrwxrwx root/root 0 2026-08-05 19:59 ./usr/lib/powerpc64le-linux-gnu/libmaus2_demangle.so.2 -> libmaus2_demangle.so.2.0.813 -rw-r--r-- root/root 67440 2026-08-05 19:59 ./usr/lib/powerpc64le-linux-gnu/libmaus2_demangle.so.2.0.813 lrwxrwxrwx root/root 0 2026-08-05 19:59 ./usr/lib/powerpc64le-linux-gnu/libmaus2_exception.so.2 -> libmaus2_exception.so.2.0.813 -rw-r--r-- root/root 67520 2026-08-05 19:59 ./usr/lib/powerpc64le-linux-gnu/libmaus2_exception.so.2.0.813 lrwxrwxrwx root/root 0 2026-08-05 19:59 ./usr/lib/powerpc64le-linux-gnu/libmaus2_parallel.so.2 -> libmaus2_parallel.so.2.0.813 -rw-r--r-- root/root 67448 2026-08-05 19:59 ./usr/lib/powerpc64le-linux-gnu/libmaus2_parallel.so.2.0.813 lrwxrwxrwx root/root 0 2026-08-05 19:59 ./usr/lib/powerpc64le-linux-gnu/libmaus2_posix.so.2 -> libmaus2_posix.so.2.0.813 -rw-r--r-- root/root 67448 2026-08-05 19:59 ./usr/lib/powerpc64le-linux-gnu/libmaus2_posix.so.2.0.813 lrwxrwxrwx root/root 0 2026-08-05 19:59 ./usr/lib/powerpc64le-linux-gnu/libmaus2_simd_align_128.so.2 -> libmaus2_simd_align_128.so.2.0.813 -rw-r--r-- root/root 67048 2026-08-05 19:59 ./usr/lib/powerpc64le-linux-gnu/libmaus2_simd_align_128.so.2.0.813 lrwxrwxrwx root/root 0 2026-08-05 19:59 ./usr/lib/powerpc64le-linux-gnu/libmaus2_simd_align_256.so.2 -> libmaus2_simd_align_256.so.2.0.813 -rw-r--r-- root/root 67528 2026-08-05 19:59 ./usr/lib/powerpc64le-linux-gnu/libmaus2_simd_align_256.so.2.0.813 lrwxrwxrwx root/root 0 2026-08-05 19:59 ./usr/lib/powerpc64le-linux-gnu/libmaus2_stacktrace.so.2 -> libmaus2_stacktrace.so.2.0.813 -rw-r--r-- root/root 67520 2026-08-05 19:59 ./usr/lib/powerpc64le-linux-gnu/libmaus2_stacktrace.so.2.0.813 drwxr-xr-x root/root 0 2026-08-05 19:59 ./usr/share/ drwxr-xr-x root/root 0 2026-08-05 19:59 ./usr/share/doc/ drwxr-xr-x root/root 0 2026-08-05 19:59 ./usr/share/doc/libmaus2-2/ -rw-r--r-- root/root 1122 2026-08-05 19:59 ./usr/share/doc/libmaus2-2/changelog.Debian.gz -rw-r--r-- root/root 50650 2022-12-10 21:04 ./usr/share/doc/libmaus2-2/changelog.gz -rw-r--r-- root/root 8044 2026-08-05 19:59 ./usr/share/doc/libmaus2-2/copyright drwxr-xr-x root/root 0 2026-08-05 19:59 ./usr/share/lintian/ drwxr-xr-x root/root 0 2026-08-05 19:59 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 245 2026-08-05 19:59 ./usr/share/lintian/overrides/libmaus2-2 libmaus2-dev_2.0.813+ds-6_ppc64el.deb ------------------------------------- new Debian package, version 2.0. size 4723800 bytes: control archive=41120 bytes. 933 bytes, 22 lines control 147875 bytes, 1655 lines md5sums Package: libmaus2-dev Source: libmaus2 Version: 2.0.813+ds-6 Architecture: ppc64el Maintainer: Debian Med Packaging Team Installed-Size: 77757 Depends: libmaus2-2 (= 2.0.813+ds-6), zlib1g-dev, libgmp-dev, libgpgme-dev, nettle-dev Built-Using: libsecrecy (= 0.0.5+ds-5) Section: libdevel Priority: optional Homepage: https://gitlab.com/german.tischler/libmaus2 Description: collection of data structures and algorithms for biobambam (devel) Libmaus2 is a collection of data structures and algorithms. It contains . * I/O classes (single byte and UTF-8) * bitio classes (input, output and various forms of bit level manipulation) * text indexing classes (suffix and LCP array, fulltext and minute (FM), ...) * BAM sequence alignment files input/output (simple and collating) . and many lower level support classes. . This package contains header files and static libraries. drwxr-xr-x root/root 0 2026-08-05 19:59 ./ drwxr-xr-x root/root 0 2026-08-05 19:59 ./usr/ drwxr-xr-x root/root 0 2026-08-05 19:59 ./usr/include/ drwxr-xr-x root/root 0 2026-08-05 19:59 ./usr/include/libmaus2/ -rw-r--r-- root/root 2640 2026-08-05 19:59 ./usr/include/libmaus2/LibMausConfig.hpp -rw-r--r-- root/root 1024 2026-08-05 19:59 ./usr/include/libmaus2/LibMausWindows.hpp drwxr-xr-x root/root 0 2026-08-05 19:59 ./usr/include/libmaus2/aio/ -rw-r--r-- root/root 3084 2026-08-05 19:59 ./usr/include/libmaus2/aio/ArrayFile.hpp -rw-r--r-- root/root 4244 2026-08-05 19:59 ./usr/include/libmaus2/aio/ArrayFileContainer.hpp -rw-r--r-- root/root 2985 2026-08-05 19:59 ./usr/include/libmaus2/aio/ArrayFileSet.hpp -rw-r--r-- root/root 1530 2026-08-05 19:59 ./usr/include/libmaus2/aio/ArrayInputStream.hpp -rw-r--r-- root/root 6593 2026-08-05 19:59 ./usr/include/libmaus2/aio/ArrayInputStreamBuffer.hpp -rw-r--r-- root/root 2276 2026-08-05 19:59 ./usr/include/libmaus2/aio/ArrayInputStreamFactory.hpp -rw-r--r-- root/root 1801 2026-08-05 19:59 ./usr/include/libmaus2/aio/Buffer.hpp -rw-r--r-- root/root 18463 2026-08-05 19:59 ./usr/include/libmaus2/aio/BufferedOutput.hpp -rw-r--r-- root/root 1336 2026-08-05 19:59 ./usr/include/libmaus2/aio/CharArrayInputStream.hpp -rw-r--r-- root/root 1871 2026-08-05 19:59 ./usr/include/libmaus2/aio/CharArrayInputStreamBuffer.hpp -rw-r--r-- root/root 1344 2026-08-05 19:59 ./usr/include/libmaus2/aio/CharArrayOutputStream.hpp -rw-r--r-- root/root 1380 2026-08-05 19:59 ./usr/include/libmaus2/aio/CharArrayOutputStreamBuffer.hpp -rw-r--r-- root/root 13425 2026-08-05 19:59 ./usr/include/libmaus2/aio/CircularBuffer.hpp -rw-r--r-- root/root 15965 2026-08-05 19:59 ./usr/include/libmaus2/aio/CircularWrapper.hpp -rw-r--r-- root/root 7335 2026-08-05 19:59 ./usr/include/libmaus2/aio/CompactDecoder4.hpp -rw-r--r-- root/root 2353 2026-08-05 19:59 ./usr/include/libmaus2/aio/CompactEncoder4.hpp -rw-r--r-- root/root 1459 2026-08-05 19:59 ./usr/include/libmaus2/aio/ConcatInputStream.hpp -rw-r--r-- root/root 8747 2026-08-05 19:59 ./usr/include/libmaus2/aio/ConcatInputStreamBuffer.hpp -rw-r--r-- root/root 1372 2026-08-05 19:59 ./usr/include/libmaus2/aio/CountOutputStream.hpp -rw-r--r-- root/root 1540 2026-08-05 19:59 ./usr/include/libmaus2/aio/CountOutputStreamBuffer.hpp -rw-r--r-- root/root 1479 2026-08-05 19:59 ./usr/include/libmaus2/aio/DebugLineOutputStream.hpp -rw-r--r-- root/root 1903 2026-08-05 19:59 ./usr/include/libmaus2/aio/DebugLineOutputStreamBuffer.hpp -rw-r--r-- root/root 2164 2026-08-05 19:59 ./usr/include/libmaus2/aio/FStreamInputOutputStreamFactory.hpp -rw-r--r-- root/root 7226 2026-08-05 19:59 ./usr/include/libmaus2/aio/FileFragment.hpp -rw-r--r-- root/root 1196 2026-08-05 19:59 ./usr/include/libmaus2/aio/FileRemoval.hpp -rw-r--r-- root/root 1729 2026-08-05 19:59 ./usr/include/libmaus2/aio/GenericPeeker.hpp -rw-r--r-- root/root 1915 2026-08-05 19:59 ./usr/include/libmaus2/aio/GetLength.hpp -rw-r--r-- root/root 2018 2026-08-05 19:59 ./usr/include/libmaus2/aio/IFStreamInputStreamFactory.hpp -rw-r--r-- root/root 1780 2026-08-05 19:59 ./usr/include/libmaus2/aio/IStreamWrapper.hpp -rw-r--r-- root/root 1602 2026-08-05 19:59 ./usr/include/libmaus2/aio/InputOutputStream.hpp -rw-r--r-- root/root 1471 2026-08-05 19:59 ./usr/include/libmaus2/aio/InputOutputStreamFactory.hpp -rw-r--r-- root/root 5650 2026-08-05 19:59 ./usr/include/libmaus2/aio/InputOutputStreamFactoryContainer.hpp -rw-r--r-- root/root 1305 2026-08-05 19:59 ./usr/include/libmaus2/aio/InputOutputStreamInstance.hpp -rw-r--r-- root/root 1228 2026-08-05 19:59 ./usr/include/libmaus2/aio/InputOutputStreamPointerWrapper.hpp -rw-r--r-- root/root 1635 2026-08-05 19:59 ./usr/include/libmaus2/aio/InputOutputStreamWrapper.hpp -rw-r--r-- root/root 1500 2026-08-05 19:59 ./usr/include/libmaus2/aio/InputStream.hpp -rw-r--r-- root/root 2021 2026-08-05 19:59 ./usr/include/libmaus2/aio/InputStreamFactory.hpp -rw-r--r-- root/root 6244 2026-08-05 19:59 ./usr/include/libmaus2/aio/InputStreamFactoryContainer.hpp -rw-r--r-- root/root 2008 2026-08-05 19:59 ./usr/include/libmaus2/aio/InputStreamInstance.hpp -rw-r--r-- root/root 2145 2026-08-05 19:59 ./usr/include/libmaus2/aio/InputStreamInstanceAtOffset.hpp -rw-r--r-- root/root 1396 2026-08-05 19:59 ./usr/include/libmaus2/aio/InputStreamObject.hpp -rw-r--r-- root/root 1332 2026-08-05 19:59 ./usr/include/libmaus2/aio/InputStreamObjectAllocator.hpp -rw-r--r-- root/root 1259 2026-08-05 19:59 ./usr/include/libmaus2/aio/InputStreamObjectTypeInfo.hpp -rw-r--r-- root/root 1287 2026-08-05 19:59 ./usr/include/libmaus2/aio/InputStreamPointerWrapper.hpp -rw-r--r-- root/root 1611 2026-08-05 19:59 ./usr/include/libmaus2/aio/InputStreamWrapper.hpp -rw-r--r-- root/root 2072 2026-08-05 19:59 ./usr/include/libmaus2/aio/LineSplittingPosixFdOutputStream.hpp -rw-r--r-- root/root 4375 2026-08-05 19:59 ./usr/include/libmaus2/aio/LineSplittingPosixFdOutputStreamBuffer.hpp -rw-r--r-- root/root 1575 2026-08-05 19:59 ./usr/include/libmaus2/aio/MemoryBackedOutputStream.hpp -rw-r--r-- root/root 3076 2026-08-05 19:59 ./usr/include/libmaus2/aio/MemoryBackedOutputStreamBuffer.hpp -rw-r--r-- root/root 6581 2026-08-05 19:59 ./usr/include/libmaus2/aio/MemoryFile.hpp -rw-r--r-- root/root 4228 2026-08-05 19:59 ./usr/include/libmaus2/aio/MemoryFileAdapter.hpp -rw-r--r-- root/root 4364 2026-08-05 19:59 ./usr/include/libmaus2/aio/MemoryFileContainer.hpp -rw-r--r-- root/root 1499 2026-08-05 19:59 ./usr/include/libmaus2/aio/MemoryInputOutputStream.hpp -rw-r--r-- root/root 8025 2026-08-05 19:59 ./usr/include/libmaus2/aio/MemoryInputOutputStreamBuffer.hpp -rw-r--r-- root/root 2061 2026-08-05 19:59 ./usr/include/libmaus2/aio/MemoryInputOutputStreamFactory.hpp -rw-r--r-- root/root 1448 2026-08-05 19:59 ./usr/include/libmaus2/aio/MemoryInputStream.hpp -rw-r--r-- root/root 6572 2026-08-05 19:59 ./usr/include/libmaus2/aio/MemoryInputStreamBuffer.hpp -rw-r--r-- root/root 2060 2026-08-05 19:59 ./usr/include/libmaus2/aio/MemoryInputStreamFactory.hpp -rw-r--r-- root/root 1469 2026-08-05 19:59 ./usr/include/libmaus2/aio/MemoryOutputStream.hpp -rw-r--r-- root/root 3938 2026-08-05 19:59 ./usr/include/libmaus2/aio/MemoryOutputStreamBuffer.hpp -rw-r--r-- root/root 2268 2026-08-05 19:59 ./usr/include/libmaus2/aio/MemoryOutputStreamFactory.hpp -rw-r--r-- root/root 2063 2026-08-05 19:59 ./usr/include/libmaus2/aio/NamedTemporaryFile.hpp -rw-r--r-- root/root 1837 2026-08-05 19:59 ./usr/include/libmaus2/aio/NamedTemporaryFileAllocator.hpp -rw-r--r-- root/root 1331 2026-08-05 19:59 ./usr/include/libmaus2/aio/NamedTemporaryFileTypeInfo.hpp -rw-r--r-- root/root 2969 2026-08-05 19:59 ./usr/include/libmaus2/aio/OFStreamOutputStreamFactory.hpp -rw-r--r-- root/root 1542 2026-08-05 19:59 ./usr/include/libmaus2/aio/OutputStream.hpp -rw-r--r-- root/root 1969 2026-08-05 19:59 ./usr/include/libmaus2/aio/OutputStreamFactory.hpp -rw-r--r-- root/root 9032 2026-08-05 19:59 ./usr/include/libmaus2/aio/OutputStreamFactoryContainer.hpp -rw-r--r-- root/root 1239 2026-08-05 19:59 ./usr/include/libmaus2/aio/OutputStreamInstance.hpp -rw-r--r-- root/root 4449 2026-08-05 19:59 ./usr/include/libmaus2/aio/OutputStreamInstanceArray.hpp -rw-r--r-- root/root 1192 2026-08-05 19:59 ./usr/include/libmaus2/aio/OutputStreamPointerWrapper.hpp -rw-r--r-- root/root 1618 2026-08-05 19:59 ./usr/include/libmaus2/aio/OutputStreamWrapper.hpp -rw-r--r-- root/root 3507 2026-08-05 19:59 ./usr/include/libmaus2/aio/PairFileDecoder.hpp -rw-r--r-- root/root 2925 2026-08-05 19:59 ./usr/include/libmaus2/aio/PosixFdInput.hpp -rw-r--r-- root/root 1621 2026-08-05 19:59 ./usr/include/libmaus2/aio/PosixFdInputOutputStream.hpp -rw-r--r-- root/root 12178 2026-08-05 19:59 ./usr/include/libmaus2/aio/PosixFdInputOutputStreamBuffer.hpp -rw-r--r-- root/root 2069 2026-08-05 19:59 ./usr/include/libmaus2/aio/PosixFdInputOutputStreamFactory.hpp -rw-r--r-- root/root 1957 2026-08-05 19:59 ./usr/include/libmaus2/aio/PosixFdInputStream.hpp -rw-r--r-- root/root 6646 2026-08-05 19:59 ./usr/include/libmaus2/aio/PosixFdInputStreamBuffer.hpp -rw-r--r-- root/root 2570 2026-08-05 19:59 ./usr/include/libmaus2/aio/PosixFdInputStreamFactory.hpp -rw-r--r-- root/root 1226 2026-08-05 19:59 ./usr/include/libmaus2/aio/PosixFdInputWrapper.hpp -rw-r--r-- root/root 1777 2026-08-05 19:59 ./usr/include/libmaus2/aio/PosixFdOutputStream.hpp -rw-r--r-- root/root 17833 2026-08-05 19:59 ./usr/include/libmaus2/aio/PosixFdOutputStreamBuffer.hpp -rw-r--r-- root/root 3355 2026-08-05 19:59 ./usr/include/libmaus2/aio/PosixFdOutputStreamFactory.hpp -rw-r--r-- root/root 3135 2026-08-05 19:59 ./usr/include/libmaus2/aio/PutOutputIterator.hpp -rw-r--r-- root/root 19283 2026-08-05 19:59 ./usr/include/libmaus2/aio/ReorderConcatGenericInput.hpp -rw-r--r-- root/root 1060 2026-08-05 19:59 ./usr/include/libmaus2/aio/SecrecyCache.hpp -rw-r--r-- root/root 1508 2026-08-05 19:59 ./usr/include/libmaus2/aio/SecrecyInputStreamFactory.hpp -rw-r--r-- root/root 1991 2026-08-05 19:59 ./usr/include/libmaus2/aio/SecrecyOutputStreamFactory.hpp -rw-r--r-- root/root 2386 2026-08-05 19:59 ./usr/include/libmaus2/aio/SerialisedPeeker.hpp -rw-r--r-- root/root 3960 2026-08-05 19:59 ./usr/include/libmaus2/aio/SingleFileFragmentMerge.hpp -rw-r--r-- root/root 3848 2026-08-05 19:59 ./usr/include/libmaus2/aio/SizeMonitorThread.hpp -rw-r--r-- root/root 1513 2026-08-05 19:59 ./usr/include/libmaus2/aio/SkipConcatInputStream.hpp -rw-r--r-- root/root 4175 2026-08-05 19:59 ./usr/include/libmaus2/aio/SkipConcatInputStreamBuffer.hpp -rw-r--r-- root/root 2665 2026-08-05 19:59 ./usr/include/libmaus2/aio/SplitWriter.hpp -rw-r--r-- root/root 1054 2026-08-05 19:59 ./usr/include/libmaus2/aio/StreamLock.hpp -rw-r--r-- root/root 9010 2026-08-05 19:59 ./usr/include/libmaus2/aio/SynchronousFastReaderBase.hpp -rw-r--r-- root/root 7827 2026-08-05 19:59 ./usr/include/libmaus2/aio/SynchronousGenericInput.hpp -rw-r--r-- root/root 8514 2026-08-05 19:59 ./usr/include/libmaus2/aio/SynchronousGenericOutput.hpp -rw-r--r-- root/root 4750 2026-08-05 19:59 ./usr/include/libmaus2/aio/TempFileArray.hpp -rw-r--r-- root/root 1483 2026-08-05 19:59 ./usr/include/libmaus2/aio/URLObject.hpp -rw-r--r-- root/root 2630 2026-08-05 19:59 ./usr/include/libmaus2/aio/WriteCompactArray.hpp drwxr-xr-x root/root 0 2026-08-05 19:59 ./usr/include/libmaus2/alignment/ -rw-r--r-- root/root 4127 2026-08-05 19:59 ./usr/include/libmaus2/alignment/BamLineInfo.hpp -rw-r--r-- root/root 1593 2026-08-05 19:59 ./usr/include/libmaus2/alignment/FMIIntervalComparator.hpp -rw-r--r-- root/root 1419 2026-08-05 19:59 ./usr/include/libmaus2/alignment/FactorMatchInfo.hpp -rw-r--r-- root/root 1188 2026-08-05 19:59 ./usr/include/libmaus2/alignment/FactorMatchInfoPosComparator.hpp -rw-r--r-- root/root 1609 2026-08-05 19:59 ./usr/include/libmaus2/alignment/KmerInfo.hpp -rw-r--r-- root/root 1564 2026-08-05 19:59 ./usr/include/libmaus2/alignment/KmerTuple.hpp -rw-r--r-- root/root 21218 2026-08-05 19:59 ./usr/include/libmaus2/alignment/SimpleLocalAligner.hpp drwxr-xr-x root/root 0 2026-08-05 19:59 ./usr/include/libmaus2/arch/ -rw-r--r-- root/root 1115 2026-08-05 19:59 ./usr/include/libmaus2/arch/CacheLineSize.hpp -rw-r--r-- root/root 2027 2026-08-05 19:59 ./usr/include/libmaus2/arch/I386Features.hpp -rw-r--r-- root/root 1080 2026-08-05 19:59 ./usr/include/libmaus2/arch/PageSize.hpp drwxr-xr-x root/root 0 2026-08-05 19:59 ./usr/include/libmaus2/autoarray/ -rw-r--r-- root/root 29714 2026-08-05 19:59 ./usr/include/libmaus2/autoarray/AutoArray.hpp -rw-r--r-- root/root 3480 2026-08-05 19:59 ./usr/include/libmaus2/autoarray/AutoArray2d.hpp -rw-r--r-- root/root 1057 2026-08-05 19:59 ./usr/include/libmaus2/autoarray/AutoArrayAllocType.hpp -rw-r--r-- root/root 5098 2026-08-05 19:59 ./usr/include/libmaus2/autoarray/AutoArrayMultiMap.hpp drwxr-xr-x root/root 0 2026-08-05 19:59 ./usr/include/libmaus2/avl/ -rw-r--r-- root/root 28307 2026-08-05 19:59 ./usr/include/libmaus2/avl/AVLSet.hpp -rw-r--r-- root/root 34224 2026-08-05 19:59 ./usr/include/libmaus2/avl/AtomicAVLMap.hpp -rw-r--r-- root/root 30154 2026-08-05 19:59 ./usr/include/libmaus2/avl/AtomicAVLPtrValueMap.hpp -rw-r--r-- root/root 29919 2026-08-05 19:59 ./usr/include/libmaus2/avl/AtomicAVLSet.hpp drwxr-xr-x root/root 0 2026-08-05 19:59 ./usr/include/libmaus2/bambam/ -rw-r--r-- root/root 16096 2026-08-05 19:59 ./usr/include/libmaus2/bambam/AdapterFilter.hpp -rw-r--r-- root/root 2282 2026-08-05 19:59 ./usr/include/libmaus2/bambam/AdapterOffsetStrand.hpp -rw-r--r-- root/root 3263 2026-08-05 19:59 ./usr/include/libmaus2/bambam/AlignmentValidity.hpp -rw-r--r-- root/root 2230 2026-08-05 19:59 ./usr/include/libmaus2/bambam/BamAccessor.hpp -rw-r--r-- root/root 89541 2026-08-05 19:59 ./usr/include/libmaus2/bambam/BamAlignment.hpp -rw-r--r-- root/root 1641 2026-08-05 19:59 ./usr/include/libmaus2/bambam/BamAlignmentComparator.hpp -rw-r--r-- root/root 10025 2026-08-05 19:59 ./usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp -rw-r--r-- root/root 202623 2026-08-05 19:59 ./usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp -rw-r--r-- root/root 15382 2026-08-05 19:59 ./usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp -rw-r--r-- root/root 12494 2026-08-05 19:59 ./usr/include/libmaus2/bambam/BamAlignmentDecoderInfo.hpp -rw-r--r-- root/root 41838 2026-08-05 19:59 ./usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp -rw-r--r-- root/root 1878 2026-08-05 19:59 ./usr/include/libmaus2/bambam/BamAlignmentExpungeCallback.hpp -rw-r--r-- root/root 1125 2026-08-05 19:59 ./usr/include/libmaus2/bambam/BamAlignmentFilter.hpp -rw-r--r-- root/root 1834 2026-08-05 19:59 ./usr/include/libmaus2/bambam/BamAlignmentFixedSizeData.hpp -rw-r--r-- root/root 1116 2026-08-05 19:59 ./usr/include/libmaus2/bambam/BamAlignmentFreeList.hpp -rw-r--r-- root/root 10375 2026-08-05 19:59 ./usr/include/libmaus2/bambam/BamAlignmentHashComparator.hpp -rw-r--r-- root/root 1977 2026-08-05 19:59 ./usr/include/libmaus2/bambam/BamAlignmentHeapComparator.hpp -rw-r--r-- root/root 3413 2026-08-05 19:59 ./usr/include/libmaus2/bambam/BamAlignmentInputCallbackBam.hpp -rw-r--r-- root/root 3492 2026-08-05 19:59 ./usr/include/libmaus2/bambam/BamAlignmentInputCallbackSnappy.hpp -rw-r--r-- root/root 1370 2026-08-05 19:59 ./usr/include/libmaus2/bambam/BamAlignmentInputPositionCallbackNull.hpp -rw-r--r-- root/root 1207 2026-08-05 19:59 ./usr/include/libmaus2/bambam/BamAlignmentInputPositionUpdateCallback.hpp -rw-r--r-- root/root 1220 2026-08-05 19:59 ./usr/include/libmaus2/bambam/BamAlignmentListNode.hpp -rw-r--r-- root/root 9619 2026-08-05 19:59 ./usr/include/libmaus2/bambam/BamAlignmentNameComparator.hpp -rw-r--r-- root/root 8575 2026-08-05 19:59 ./usr/include/libmaus2/bambam/BamAlignmentNameHIComparator.hpp -rw-r--r-- root/root 8456 2026-08-05 19:59 ./usr/include/libmaus2/bambam/BamAlignmentNameLexicographicComparator.hpp -rw-r--r-- root/root 1137 2026-08-05 19:59 ./usr/include/libmaus2/bambam/BamAlignmentPairFreeList.hpp -rw-r--r-- root/root 1247 2026-08-05 19:59 ./usr/include/libmaus2/bambam/BamAlignmentPairListNode.hpp -rw-r--r-- root/root 4390 2026-08-05 19:59 ./usr/include/libmaus2/bambam/BamAlignmentPosComparator.hpp -rw-r--r-- root/root 1890 2026-08-05 19:59 ./usr/include/libmaus2/bambam/BamAlignmentPrinter.hpp -rw-r--r-- root/root 2093 2026-08-05 19:59 ./usr/include/libmaus2/bambam/BamAlignmentReadGroupFilter.hpp -rw-r--r-- root/root 2826 2026-08-05 19:59 ./usr/include/libmaus2/bambam/BamAlignmentReg2Bin.hpp -rw-r--r-- root/root 2199 2026-08-05 19:59 ./usr/include/libmaus2/bambam/BamAlignmentSnappyInput.hpp -rw-r--r-- root/root 9113 2026-08-05 19:59 ./usr/include/libmaus2/bambam/BamAlignmentSortingCircularHashEntryOverflow.hpp -rw-r--r-- root/root 6004 2026-08-05 19:59 ./usr/include/libmaus2/bambam/BamAlignmentTagComparator.hpp -rw-r--r-- root/root 5842 2026-08-05 19:59 ./usr/include/libmaus2/bambam/BamAlignmentTagOnlyComparator.hpp -rw-r--r-- root/root 3766 2026-08-05 19:59 ./usr/include/libmaus2/bambam/BamAuxFilterVector.hpp -rw-r--r-- root/root 2028 2026-08-05 19:59 ./usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp -rw-r--r-- root/root 2050 2026-08-05 19:59 ./usr/include/libmaus2/bambam/BamAuxSortingBufferEntry.hpp -rw-r--r-- root/root 1508 2026-08-05 19:59 ./usr/include/libmaus2/bambam/BamBlockWriterBase.hpp -rw-r--r-- root/root 15514 2026-08-05 19:59 ./usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp -rw-r--r-- root/root 7430 2026-08-05 19:59 ./usr/include/libmaus2/bambam/BamCat.hpp -rw-r--r-- root/root 11642 2026-08-05 19:59 ./usr/include/libmaus2/bambam/BamCatHeader.hpp -rw-r--r-- root/root 25196 2026-08-05 19:59 ./usr/include/libmaus2/bambam/BamDecoder.hpp -rw-r--r-- root/root 1102 2026-08-05 19:59 ./usr/include/libmaus2/bambam/BamDefaultAdapters.hpp -rw-r--r-- root/root 19934 2026-08-05 19:59 ./usr/include/libmaus2/bambam/BamEntryContainer.hpp -rw-r--r-- root/root 4942 2026-08-05 19:59 ./usr/include/libmaus2/bambam/BamFlagBase.hpp -rw-r--r-- root/root 1238 2026-08-05 19:59 ./usr/include/libmaus2/bambam/BamFormatAuxiliary.hpp -rw-r--r-- root/root 37051 2026-08-05 19:59 ./usr/include/libmaus2/bambam/BamHeader.hpp -rw-r--r-- root/root 43459 2026-08-05 19:59 ./usr/include/libmaus2/bambam/BamHeaderLowMem.hpp -rw-r--r-- root/root 11828 2026-08-05 19:59 ./usr/include/libmaus2/bambam/BamHeaderParserState.hpp -rw-r--r-- root/root 1409 2026-08-05 19:59 ./usr/include/libmaus2/bambam/BamHeaderParserStateBase.hpp -rw-r--r-- root/root 1237 2026-08-05 19:59 ./usr/include/libmaus2/bambam/BamHeaderReadGroupInterface.hpp -rw-r--r-- root/root 2538 2026-08-05 19:59 ./usr/include/libmaus2/bambam/BamHeaderUpdate.hpp -rw-r--r-- root/root 11761 2026-08-05 19:59 ./usr/include/libmaus2/bambam/BamIndex.hpp -rw-r--r-- root/root 1366 2026-08-05 19:59 ./usr/include/libmaus2/bambam/BamIndexBin.hpp -rw-r--r-- root/root 2029 2026-08-05 19:59 ./usr/include/libmaus2/bambam/BamIndexBinChunk.hpp -rw-r--r-- root/root 37469 2026-08-05 19:59 ./usr/include/libmaus2/bambam/BamIndexGenerator.hpp -rw-r--r-- root/root 1221 2026-08-05 19:59 ./usr/include/libmaus2/bambam/BamIndexLinear.hpp -rw-r--r-- root/root 1815 2026-08-05 19:59 ./usr/include/libmaus2/bambam/BamIndexLinearChunk.hpp -rw-r--r-- root/root 1412 2026-08-05 19:59 ./usr/include/libmaus2/bambam/BamIndexMetaInfo.hpp -rw-r--r-- root/root 1307 2026-08-05 19:59 ./usr/include/libmaus2/bambam/BamIndexRef.hpp -rw-r--r-- root/root 2199 2026-08-05 19:59 ./usr/include/libmaus2/bambam/BamMergeCoordinate.hpp -rw-r--r-- root/root 1930 2026-08-05 19:59 ./usr/include/libmaus2/bambam/BamMergeQueryName.hpp -rw-r--r-- root/root 6850 2026-08-05 19:59 ./usr/include/libmaus2/bambam/BamMergeTemplate.hpp -rw-r--r-- root/root 5901 2026-08-05 19:59 ./usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp -rw-r--r-- root/root 5164 2026-08-05 19:59 ./usr/include/libmaus2/bambam/BamNumExtractor.hpp -rw-r--r-- root/root 1289 2026-08-05 19:59 ./usr/include/libmaus2/bambam/BamNumericalIndexBase.hpp -rw-r--r-- root/root 4988 2026-08-05 19:59 ./usr/include/libmaus2/bambam/BamNumericalIndexDecoder.hpp -rw-r--r-- root/root 15718 2026-08-05 19:59 ./usr/include/libmaus2/bambam/BamNumericalIndexGenerator.hpp -rw-r--r-- root/root 5494 2026-08-05 19:59 ./usr/include/libmaus2/bambam/BamParallelRewrite.hpp -rw-r--r-- root/root 1989 2026-08-05 19:59 ./usr/include/libmaus2/bambam/BamPeeker.hpp -rw-r--r-- root/root 5830 2026-08-05 19:59 ./usr/include/libmaus2/bambam/BamRange.hpp -rw-r--r-- root/root 8508 2026-08-05 19:59 ./usr/include/libmaus2/bambam/BamRangeDecoder.hpp -rw-r--r-- root/root 4734 2026-08-05 19:59 ./usr/include/libmaus2/bambam/BamRangeParser.hpp -rw-r--r-- root/root 8906 2026-08-05 19:59 ./usr/include/libmaus2/bambam/BamRawDecoder.hpp -rw-r--r-- root/root 2067 2026-08-05 19:59 ./usr/include/libmaus2/bambam/BamRawPeeker.hpp -rw-r--r-- root/root 1658 2026-08-05 19:59 ./usr/include/libmaus2/bambam/BamSeqEncodeTable.hpp -rw-r--r-- root/root 24379 2026-08-05 19:59 ./usr/include/libmaus2/bambam/BamStreamingMarkDuplicates.hpp -rw-r--r-- root/root 29889 2026-08-05 19:59 ./usr/include/libmaus2/bambam/BamStreamingMarkDuplicatesSupport.hpp -rw-r--r-- root/root 10490 2026-08-05 19:59 ./usr/include/libmaus2/bambam/BamToFastqOutputFileSet.hpp -rw-r--r-- root/root 17716 2026-08-05 19:59 ./usr/include/libmaus2/bambam/BamWriter.hpp -rw-r--r-- root/root 2433 2026-08-05 19:59 ./usr/include/libmaus2/bambam/BgzfDeflateOutputCallbackBamIndex.hpp -rw-r--r-- root/root 2010 2026-08-05 19:59 ./usr/include/libmaus2/bambam/BgzfDeflateOutputCallbackBamNumericalIndex.hpp -rw-r--r-- root/root 1733 2026-08-05 19:59 ./usr/include/libmaus2/bambam/ChecksumsFactory.hpp -rw-r--r-- root/root 2281 2026-08-05 19:59 ./usr/include/libmaus2/bambam/ChecksumsInterface.hpp -rw-r--r-- root/root 1477 2026-08-05 19:59 ./usr/include/libmaus2/bambam/ChecksumsInterfaceAllocator.hpp -rw-r--r-- root/root 1346 2026-08-05 19:59 ./usr/include/libmaus2/bambam/ChecksumsInterfaceTypeInfo.hpp -rw-r--r-- root/root 4699 2026-08-05 19:59 ./usr/include/libmaus2/bambam/Chromosome.hpp -rw-r--r-- root/root 8979 2026-08-05 19:59 ./usr/include/libmaus2/bambam/ChromosomeVectorMerge.hpp -rw-r--r-- root/root 1659 2026-08-05 19:59 ./usr/include/libmaus2/bambam/CigarDecoder.hpp -rw-r--r-- root/root 1050 2026-08-05 19:59 ./usr/include/libmaus2/bambam/CigarOperation.hpp -rw-r--r-- root/root 1735 2026-08-05 19:59 ./usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp -rw-r--r-- root/root 6897 2026-08-05 19:59 ./usr/include/libmaus2/bambam/CigarStringParser.hpp -rw-r--r-- root/root 2147 2026-08-05 19:59 ./usr/include/libmaus2/bambam/CigarStringReader.hpp -rw-r--r-- root/root 32825 2026-08-05 19:59 ./usr/include/libmaus2/bambam/CircularHashCollatingBamDecoder.hpp -rw-r--r-- root/root 1464 2026-08-05 19:59 ./usr/include/libmaus2/bambam/CollatingBamDecoderAlignmentInputCallback.hpp -rw-r--r-- root/root 3668 2026-08-05 19:59 ./usr/include/libmaus2/bambam/CompactReadEndsBase.hpp -rw-r--r-- root/root 3664 2026-08-05 19:59 ./usr/include/libmaus2/bambam/CompactReadEndsComparator.hpp -rw-r--r-- root/root 4237 2026-08-05 19:59 ./usr/include/libmaus2/bambam/CramRange.hpp -rw-r--r-- root/root 3312 2026-08-05 19:59 ./usr/include/libmaus2/bambam/DecoderBase.hpp -rw-r--r-- root/root 62809 2026-08-05 19:59 ./usr/include/libmaus2/bambam/DupMarkBase.hpp -rw-r--r-- root/root 1323 2026-08-05 19:59 ./usr/include/libmaus2/bambam/DupSetCallback.hpp -rw-r--r-- root/root 1547 2026-08-05 19:59 ./usr/include/libmaus2/bambam/DupSetCallbackSet.hpp -rw-r--r-- root/root 2201 2026-08-05 19:59 ./usr/include/libmaus2/bambam/DupSetCallbackSharedVector.hpp -rw-r--r-- root/root 2879 2026-08-05 19:59 ./usr/include/libmaus2/bambam/DupSetCallbackStream.hpp -rw-r--r-- root/root 3120 2026-08-05 19:59 ./usr/include/libmaus2/bambam/DupSetCallbackVector.hpp -rw-r--r-- root/root 11589 2026-08-05 19:59 ./usr/include/libmaus2/bambam/DuplicationMetrics.hpp -rw-r--r-- root/root 1463 2026-08-05 19:59 ./usr/include/libmaus2/bambam/EncoderBase.hpp -rw-r--r-- root/root 4138 2026-08-05 19:59 ./usr/include/libmaus2/bambam/GeneFlatFile.hpp -rw-r--r-- root/root 7149 2026-08-05 19:59 ./usr/include/libmaus2/bambam/GeneFlatFileEntry.hpp -rw-r--r-- root/root 8801 2026-08-05 19:59 ./usr/include/libmaus2/bambam/HeaderLine.hpp -rw-r--r-- root/root 11075 2026-08-05 19:59 ./usr/include/libmaus2/bambam/MdNmRecalculation.hpp -rw-r--r-- root/root 2603 2026-08-05 19:59 ./usr/include/libmaus2/bambam/MdStringComputationContext.hpp -rw-r--r-- root/root 2284 2026-08-05 19:59 ./usr/include/libmaus2/bambam/MergeQueueElement.hpp -rw-r--r-- root/root 2144 2026-08-05 19:59 ./usr/include/libmaus2/bambam/OptName.hpp -rw-r--r-- root/root 2056 2026-08-05 19:59 ./usr/include/libmaus2/bambam/OptNameReader.hpp -rw-r--r-- root/root 3180 2026-08-05 19:59 ./usr/include/libmaus2/bambam/OpticalComparator.hpp -rw-r--r-- root/root 3834 2026-08-05 19:59 ./usr/include/libmaus2/bambam/PileQualityVectorElement.hpp -rw-r--r-- root/root 3289 2026-08-05 19:59 ./usr/include/libmaus2/bambam/PileVectorElement.hpp -rw-r--r-- root/root 15251 2026-08-05 19:59 ./usr/include/libmaus2/bambam/ProgramHeaderLineSet.hpp -rw-r--r-- root/root 6157 2026-08-05 19:59 ./usr/include/libmaus2/bambam/ReadEnds.hpp -rw-r--r-- root/root 33705 2026-08-05 19:59 ./usr/include/libmaus2/bambam/ReadEndsBase.hpp -rw-r--r-- root/root 1198 2026-08-05 19:59 ./usr/include/libmaus2/bambam/ReadEndsBaseLongHashAttributeComparator.hpp -rw-r--r-- root/root 1142 2026-08-05 19:59 ./usr/include/libmaus2/bambam/ReadEndsBasePointerComparator.hpp -rw-r--r-- root/root 1202 2026-08-05 19:59 ./usr/include/libmaus2/bambam/ReadEndsBaseShortHashAttributeComparator.hpp -rw-r--r-- root/root 6988 2026-08-05 19:59 ./usr/include/libmaus2/bambam/ReadEndsBlockDecoderBase.hpp -rw-r--r-- root/root 39969 2026-08-05 19:59 ./usr/include/libmaus2/bambam/ReadEndsBlockDecoderBaseCollection.hpp -rw-r--r-- root/root 5248 2026-08-05 19:59 ./usr/include/libmaus2/bambam/ReadEndsBlockDecoderBaseCollectionInfo.hpp -rw-r--r-- root/root 4408 2026-08-05 19:59 ./usr/include/libmaus2/bambam/ReadEndsBlockDecoderBaseCollectionInfoBase.hpp -rw-r--r-- root/root 16447 2026-08-05 19:59 ./usr/include/libmaus2/bambam/ReadEndsBlockIndexSet.hpp -rw-r--r-- root/root 21411 2026-08-05 19:59 ./usr/include/libmaus2/bambam/ReadEndsContainer.hpp -rw-r--r-- root/root 1361 2026-08-05 19:59 ./usr/include/libmaus2/bambam/ReadEndsContainerBase.hpp -rw-r--r-- root/root 1096 2026-08-05 19:59 ./usr/include/libmaus2/bambam/ReadEndsFreeList.hpp -rw-r--r-- root/root 1676 2026-08-05 19:59 ./usr/include/libmaus2/bambam/ReadEndsHeapPairComparator.hpp -rw-r--r-- root/root 1188 2026-08-05 19:59 ./usr/include/libmaus2/bambam/ReadEndsListNode.hpp -rw-r--r-- root/root 1849 2026-08-05 19:59 ./usr/include/libmaus2/bambam/ReadEndsStreamDecoder.hpp -rw-r--r-- root/root 2278 2026-08-05 19:59 ./usr/include/libmaus2/bambam/ReadEndsStreamDecoderBase.hpp -rw-r--r-- root/root 1727 2026-08-05 19:59 ./usr/include/libmaus2/bambam/ReadEndsStreamDecoderFileBase.hpp -rw-r--r-- root/root 5506 2026-08-05 19:59 ./usr/include/libmaus2/bambam/ReadGroup.hpp -rw-r--r-- root/root 2534 2026-08-05 19:59 ./usr/include/libmaus2/bambam/RgInfo.hpp -rw-r--r-- root/root 4643 2026-08-05 19:59 ./usr/include/libmaus2/bambam/SamDecoder.hpp -rw-r--r-- root/root 1999 2026-08-05 19:59 ./usr/include/libmaus2/bambam/SamDecoderWrapper.hpp -rw-r--r-- root/root 2260 2026-08-05 19:59 ./usr/include/libmaus2/bambam/SamEncoder.hpp -rw-r--r-- root/root 25446 2026-08-05 19:59 ./usr/include/libmaus2/bambam/SamInfo.hpp -rw-r--r-- root/root 1270 2026-08-05 19:59 ./usr/include/libmaus2/bambam/SamInfoAllocator.hpp -rw-r--r-- root/root 3895 2026-08-05 19:59 ./usr/include/libmaus2/bambam/SamInfoBase.hpp -rw-r--r-- root/root 1272 2026-08-05 19:59 ./usr/include/libmaus2/bambam/SamInfoTypeInfo.hpp -rw-r--r-- root/root 1465 2026-08-05 19:59 ./usr/include/libmaus2/bambam/SamPrintableTable.hpp -rw-r--r-- root/root 1469 2026-08-05 19:59 ./usr/include/libmaus2/bambam/SamZPrintableTable.hpp -rw-r--r-- root/root 10560 2026-08-05 19:59 ./usr/include/libmaus2/bambam/Scram.h -rw-r--r-- root/root 19162 2026-08-05 19:59 ./usr/include/libmaus2/bambam/ScramDecoder.hpp -rw-r--r-- root/root 3908 2026-08-05 19:59 ./usr/include/libmaus2/bambam/ScramEncoder.hpp -rw-r--r-- root/root 7343 2026-08-05 19:59 ./usr/include/libmaus2/bambam/ScramInputContainer.hpp -rw-r--r-- root/root 4982 2026-08-05 19:59 ./usr/include/libmaus2/bambam/SeqChksumPrimeNumbers.hpp -rw-r--r-- root/root 2827 2026-08-05 19:59 ./usr/include/libmaus2/bambam/SeqChksumUpdateContext.hpp -rw-r--r-- root/root 5587 2026-08-05 19:59 ./usr/include/libmaus2/bambam/SnappyAlignmentMergeInput.hpp -rw-r--r-- root/root 5019 2026-08-05 19:59 ./usr/include/libmaus2/bambam/SortedFragDecoder.hpp -rw-r--r-- root/root 5133 2026-08-05 19:59 ./usr/include/libmaus2/bambam/StrCmpNum.hpp -rw-r--r-- root/root 2993 2026-08-05 19:59 ./usr/include/libmaus2/bambam/StrCmpNumRecode.hpp drwxr-xr-x root/root 0 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/ -rw-r--r-- root/root 1240 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/AddDuplicationMetricsInterface.hpp -rw-r--r-- root/root 1264 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/AddPendingCompressBufferWriteInterface.hpp -rw-r--r-- root/root 1465 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/AddWritePendingBgzfBlockInterface.hpp -rw-r--r-- root/root 2015 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/AlignmentBlockCompressPackage.hpp -rw-r--r-- root/root 1364 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/AlignmentBlockCompressPackageReturnInterface.hpp -rw-r--r-- root/root 17236 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/AlignmentBuffer.hpp -rw-r--r-- root/root 1465 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/AlignmentBufferAllocator.hpp -rw-r--r-- root/root 1326 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/AlignmentBufferHeapComparator.hpp -rw-r--r-- root/root 1312 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/AlignmentBufferReinsertInterface.hpp -rw-r--r-- root/root 1294 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/AlignmentBufferReturnInterface.hpp -rw-r--r-- root/root 1408 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/AlignmentBufferTypeInfo.hpp -rw-r--r-- root/root 6211 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/AlignmentRewriteBuffer.hpp -rw-r--r-- root/root 1353 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/AlignmentRewriteBufferAddPendingInterface.hpp -rw-r--r-- root/root 1500 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/AlignmentRewriteBufferAllocator.hpp -rw-r--r-- root/root 1477 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/AlignmentRewriteBufferCoordinateComparator.hpp -rw-r--r-- root/root 2113 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/AlignmentRewriteBufferPosComparator.hpp -rw-r--r-- root/root 1400 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/AlignmentRewriteBufferReinsertForFillingInterface.hpp -rw-r--r-- root/root 2466 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/AlignmentRewritePosMergeSortPackage.hpp -rw-r--r-- root/root 2521 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/AlignmentRewritePosSortBaseSortPackage.hpp -rw-r--r-- root/root 6047 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/AlignmentRewritePosSortContext.hpp -rw-r--r-- root/root 1232 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/AlignmentRewritePosSortContextBaseBlockSortedInterface.hpp -rw-r--r-- root/root 1221 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/AlignmentRewritePosSortContextMergePackageFinished.hpp -rw-r--r-- root/root 1332 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/BamBlockIndexingBlockFinishedInterface.hpp -rw-r--r-- root/root 2147 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/BamBlockIndexingWorkPackage.hpp -rw-r--r-- root/root 3060 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/BamBlockIndexingWorkPackageDispatcher.hpp -rw-r--r-- root/root 1308 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/BamBlockIndexingWorkPackageReturnInterface.hpp -rw-r--r-- root/root 1377 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/BamBlockNumericalIndexingBlockFinishedInterface.hpp -rw-r--r-- root/root 2273 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/BamBlockNumericalIndexingWorkPackage.hpp -rw-r--r-- root/root 3222 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/BamBlockNumericalIndexingWorkPackageDispatcher.hpp -rw-r--r-- root/root 1371 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/BamBlockNumericalIndexingWorkPackageReturnInterface.hpp -rw-r--r-- root/root 1347 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/BaseMergeSortWorkPackageReturnInterface.hpp -rw-r--r-- root/root 2120 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/BaseSortWorkPackageDispatcher.hpp -rw-r--r-- root/root 1360 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/BaseSortWorkPackageReturnInterface.hpp -rw-r--r-- root/root 1297 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/BgzfInflateZStreamBaseGetInterface.hpp -rw-r--r-- root/root 1327 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/BgzfInflateZStreamBaseReturnInterface.hpp -rw-r--r-- root/root 2133 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/BgzfLinearMemCompressWorkPackage.hpp -rw-r--r-- root/root 4307 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/BgzfLinearMemCompressWorkPackageDispatcher.hpp -rw-r--r-- root/root 1335 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/BgzfLinearMemCompressWorkPackageReturnInterface.hpp -rw-r--r-- root/root 1277 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/BgzfOutputBlockWrittenInterface.hpp -rw-r--r-- root/root 4791 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/BlockCompressPackageDispatcher.hpp -rw-r--r-- root/root 77592 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/BlockMergeControl.hpp -rw-r--r-- root/root 1166 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/BlockMergeControlTypeBase.hpp -rw-r--r-- root/root 106815 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/BlockSortControl.hpp -rw-r--r-- root/root 1142 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/BlockSortControlBase.hpp -rw-r--r-- root/root 1224 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/ChecksumsInterfaceGetInterface.hpp -rw-r--r-- root/root 1235 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/ChecksumsInterfacePutInterface.hpp -rw-r--r-- root/root 1496 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/CompressBuffer.hpp -rw-r--r-- root/root 1288 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/CompressBufferAllocator.hpp -rw-r--r-- root/root 1220 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/CompressBufferHeapComparator.hpp -rw-r--r-- root/root 1546 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/CompressionPendingElement.hpp -rw-r--r-- root/root 2228 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/ControlInputInfo.hpp -rw-r--r-- root/root 3145 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/CramEncodingSupportData.hpp -rw-r--r-- root/root 2434 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/CramEncodingWorkPackage.hpp -rw-r--r-- root/root 2038 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/CramEncodingWorkPackageDispatcher.hpp -rw-r--r-- root/root 1280 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/CramEncodingWorkPackageReturnInterface.hpp -rw-r--r-- root/root 3975 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/CramInterface.h -rw-r--r-- root/root 2410 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/CramOutputBlock.hpp -rw-r--r-- root/root 1287 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/CramOutputBlockChecksumComputedInterface.hpp -rw-r--r-- root/root 2422 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/CramOutputBlockChecksumPackage.hpp -rw-r--r-- root/root 2705 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/CramOutputBlockChecksumPackageDispatcher.hpp -rw-r--r-- root/root 1317 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/CramOutputBlockChecksumPackageReturnInterface.hpp -rw-r--r-- root/root 1350 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/CramOutputBlockIdComparator.hpp -rw-r--r-- root/root 1262 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/CramOutputBlockSizeComparator.hpp -rw-r--r-- root/root 2197 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/CramOutputBlockWritePackage.hpp -rw-r--r-- root/root 2863 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/CramOutputBlockWritePackageDispatcher.hpp -rw-r--r-- root/root 1308 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/CramOutputBlockWritePackageFinishedInterface.hpp -rw-r--r-- root/root 1309 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/CramOutputBlockWritePackageReturnInterface.hpp -rw-r--r-- root/root 2718 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/CramPassPointerObject.hpp -rw-r--r-- root/root 1315 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/CramPassPointerObjectAllocator.hpp -rw-r--r-- root/root 1293 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/CramPassPointerObjectComparator.hpp -rw-r--r-- root/root 1417 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/CramPassPointerObjectTypeInfo.hpp -rw-r--r-- root/root 2339 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/DecompressBlockWorkPackage.hpp -rw-r--r-- root/root 4081 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/DecompressBlockWorkPackageDispatcher.hpp -rw-r--r-- root/root 1342 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/DecompressBlockWorkPackageReturnInterface.hpp -rw-r--r-- root/root 2554 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/DecompressBlocksWorkPackage.hpp -rw-r--r-- root/root 4675 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/DecompressBlocksWorkPackageDispatcher.hpp -rw-r--r-- root/root 1349 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/DecompressBlocksWorkPackageReturnInterface.hpp -rw-r--r-- root/root 8708 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/DecompressedBlock.hpp -rw-r--r-- root/root 1319 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/DecompressedBlockAddPendingInterface.hpp -rw-r--r-- root/root 1282 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/DecompressedBlockAllocator.hpp -rw-r--r-- root/root 1379 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/DecompressedBlockHeapComparator.hpp -rw-r--r-- root/root 1297 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/DecompressedBlockReorderHeapComparator.hpp -rw-r--r-- root/root 1296 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/DecompressedBlockReturnInterface.hpp -rw-r--r-- root/root 1420 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/DecompressedBlockTypeInfo.hpp -rw-r--r-- root/root 1463 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/DecompressedPendingObject.hpp -rw-r--r-- root/root 1294 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/DecompressedPendingObjectHeapComparator.hpp -rw-r--r-- root/root 4758 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/FastQInputDesc.hpp -rw-r--r-- root/root 1783 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/FastQInputDescBase.hpp -rw-r--r-- root/root 1738 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/FastqInputPackage.hpp -rw-r--r-- root/root 1285 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/FastqInputPackageAddPendingInterface.hpp -rw-r--r-- root/root 6885 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/FastqInputPackageDispatcher.hpp -rw-r--r-- root/root 1238 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/FastqInputPackageReturnInterface.hpp -rw-r--r-- root/root 1786 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/FastqParsePackage.hpp -rw-r--r-- root/root 5854 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/FastqParsePackageDispatcher.hpp -rw-r--r-- root/root 1272 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/FastqParsePackageFinishedInterface.hpp -rw-r--r-- root/root 1239 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/FastqParsePackageReturnInterface.hpp -rw-r--r-- root/root 18761 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/FastqToBamControl.hpp -rw-r--r-- root/root 1484 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/FastqToBamControlInputBlockHeapComparator.hpp -rw-r--r-- root/root 2192 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/FastqToBamControlSubReadPending.hpp -rw-r--r-- root/root 1578 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/FastqToBamControlSubReadPendingHeapComparator.hpp -rw-r--r-- root/root 1310 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/FileChecksumBlockFinishedInterface.hpp -rw-r--r-- root/root 2129 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/FileChecksumBlockWorkPackage.hpp -rw-r--r-- root/root 2886 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/FileChecksumBlockWorkPackageDispatcher.hpp -rw-r--r-- root/root 1315 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/FileChecksumBlockWorkPackageReturnInterface.hpp -rw-r--r-- root/root 1313 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/FragReadEndsContainerFlushFinishedInterface.hpp -rw-r--r-- root/root 2311 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/FragReadEndsContainerFlushWorkPackage.hpp -rw-r--r-- root/root 2710 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/FragReadEndsContainerFlushWorkPackageDispatcher.hpp -rw-r--r-- root/root 1370 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/FragReadEndsContainerFlushWorkPackageReturnInterface.hpp -rw-r--r-- root/root 2582 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/FragReadEndsMergeWorkPackage.hpp -rw-r--r-- root/root 6285 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/FragReadEndsMergeWorkPackageDispatcher.hpp -rw-r--r-- root/root 1317 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/FragReadEndsMergeWorkPackageFinishedInterface.hpp -rw-r--r-- root/root 1307 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/FragReadEndsMergeWorkPackageReturnInterface.hpp -rw-r--r-- root/root 9037 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/FragmentAlignmentBuffer.hpp -rw-r--r-- root/root 1556 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/FragmentAlignmentBufferAllocator.hpp -rw-r--r-- root/root 2506 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/FragmentAlignmentBufferBaseSortPackage.hpp -rw-r--r-- root/root 2287 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/FragmentAlignmentBufferBaseSortWorkPackageDispatcher.hpp -rw-r--r-- root/root 1406 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/FragmentAlignmentBufferBaseSortWorkPackageReturnInterface.hpp -rw-r--r-- root/root 7614 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/FragmentAlignmentBufferFragment.hpp -rw-r--r-- root/root 1374 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/FragmentAlignmentBufferHeapComparator.hpp -rw-r--r-- root/root 2479 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/FragmentAlignmentBufferMergeSortPackage.hpp -rw-r--r-- root/root 2507 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/FragmentAlignmentBufferMergeSortWorkPackage.hpp -rw-r--r-- root/root 2385 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/FragmentAlignmentBufferMergeSortWorkPackageDispatcher.hpp -rw-r--r-- root/root 1481 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/FragmentAlignmentBufferMergeSortWorkPackageReturnInterface.hpp -rw-r--r-- root/root 1557 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/FragmentAlignmentBufferNameComparator.hpp -rw-r--r-- root/root 1308 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/FragmentAlignmentBufferPointerTypeSwitch.hpp -rw-r--r-- root/root 1399 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/FragmentAlignmentBufferPointerTypeSwitchHelper.hpp -rw-r--r-- root/root 1551 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/FragmentAlignmentBufferPosComparator.hpp -rw-r--r-- root/root 1577 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/FragmentAlignmentBufferQueryNameComparator.hpp -rw-r--r-- root/root 2146 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/FragmentAlignmentBufferReorderWorkPackage.hpp -rw-r--r-- root/root 2941 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/FragmentAlignmentBufferReorderWorkPackageDispatcher.hpp -rw-r--r-- root/root 1425 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/FragmentAlignmentBufferReorderWorkPackageFinishedInterface.hpp -rw-r--r-- root/root 1417 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/FragmentAlignmentBufferReorderWorkPackageReturnInterface.hpp -rw-r--r-- root/root 1514 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/FragmentAlignmentBufferRewriteFragmentCompleteInterface.hpp -rw-r--r-- root/root 2417 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/FragmentAlignmentBufferRewriteReadEndsWorkPackage.hpp -rw-r--r-- root/root 20590 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/FragmentAlignmentBufferRewriteReadEndsWorkPackageDispatcher.hpp -rw-r--r-- root/root 1462 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/FragmentAlignmentBufferRewriteReadEndsWorkPackageReturnInterface.hpp -rw-r--r-- root/root 1381 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/FragmentAlignmentBufferRewriteUpdateInterval.hpp -rw-r--r-- root/root 2223 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/FragmentAlignmentBufferRewriteWorkPackage.hpp -rw-r--r-- root/root 16225 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/FragmentAlignmentBufferRewriteWorkPackageDispatcher.hpp -rw-r--r-- root/root 1406 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/FragmentAlignmentBufferRewriteWorkPackageReturnInterface.hpp -rw-r--r-- root/root 6672 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/FragmentAlignmentBufferSortContext.hpp -rw-r--r-- root/root 1248 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/FragmentAlignmentBufferSortContextBaseBlockSortedInterface.hpp -rw-r--r-- root/root 1237 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/FragmentAlignmentBufferSortContextMergePackageFinished.hpp -rw-r--r-- root/root 1304 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/FragmentAlignmentBufferSortFinishedInterface.hpp -rw-r--r-- root/root 1456 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/FragmentAlignmentBufferTypeInfo.hpp -rw-r--r-- root/root 1805 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/GenericInputBamParseObject.hpp -rw-r--r-- root/root 1853 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/GenericInputBamParseWorkPackage.hpp -rw-r--r-- root/root 1374 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/GenericInputBamParseWorkPackageBlockParsedInterface.hpp -rw-r--r-- root/root 2568 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/GenericInputBamParseWorkPackageDispatcher.hpp -rw-r--r-- root/root 1336 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/GenericInputBamParseWorkPackageReturnInterface.hpp -rw-r--r-- root/root 2394 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/GenericInputBase.hpp -rw-r--r-- root/root 1945 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/GenericInputBgzfDecompressionWorkPackage.hpp -rw-r--r-- root/root 1496 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/GenericInputBgzfDecompressionWorkPackageDecompressedBlockReturnInterface.hpp -rw-r--r-- root/root 5821 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/GenericInputBgzfDecompressionWorkPackageDispatcher.hpp -rw-r--r-- root/root 1468 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/GenericInputBgzfDecompressionWorkPackageMemInputBlockReturnInterface.hpp -rw-r--r-- root/root 1399 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/GenericInputBgzfDecompressionWorkPackageReturnInterface.hpp -rw-r--r-- root/root 1494 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/GenericInputBgzfDecompressionWorkSubBlockDecompressionFinishedInterface.hpp -rw-r--r-- root/root 4398 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/GenericInputBlock.hpp -rw-r--r-- root/root 1703 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/GenericInputBlockAllocator.hpp -rw-r--r-- root/root 1350 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/GenericInputBlockFillResult.hpp -rw-r--r-- root/root 2026 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/GenericInputBlockSubBlockInfo.hpp -rw-r--r-- root/root 1519 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/GenericInputBlockTypeInfo.hpp -rw-r--r-- root/root 1372 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/GenericInputControlBlockCompressionFinishedInterface.hpp -rw-r--r-- root/root 2022 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/GenericInputControlBlockCompressionWorkPackage.hpp -rw-r--r-- root/root 4571 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/GenericInputControlBlockCompressionWorkPackageDispatcher.hpp -rw-r--r-- root/root 1441 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/GenericInputControlBlockCompressionWorkPackageReturnInterface.hpp -rw-r--r-- root/root 2068 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/GenericInputControlBlockWritePackage.hpp -rw-r--r-- root/root 1427 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/GenericInputControlBlockWritePackageBlockWrittenInterface.hpp -rw-r--r-- root/root 3422 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/GenericInputControlBlockWritePackageDispatcher.hpp -rw-r--r-- root/root 1371 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/GenericInputControlBlockWritePackageReturnInterface.hpp -rw-r--r-- root/root 2111 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/GenericInputControlBlocksWritePackage.hpp -rw-r--r-- root/root 3608 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/GenericInputControlBlocksWritePackageDispatcher.hpp -rw-r--r-- root/root 1378 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/GenericInputControlBlocksWritePackageReturnInterface.hpp -rw-r--r-- root/root 2191 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/GenericInputControlCompressionPending.hpp -rw-r--r-- root/root 1356 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/GenericInputControlCompressionPendingHeapComparator.hpp -rw-r--r-- root/root 1297 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/GenericInputControlGetCompressorInterface.hpp -rw-r--r-- root/root 1351 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/GenericInputControlMergeBlockFinishedInterface.hpp -rw-r--r-- root/root 4507 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/GenericInputControlMergeHeapEntry.hpp -rw-r--r-- root/root 1156 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/GenericInputControlMergeRequeue.hpp -rw-r--r-- root/root 1306 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/GenericInputControlPutCompressorInterface.hpp -rw-r--r-- root/root 1319 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/GenericInputControlReadAddPendingInterface.hpp -rw-r--r-- root/root 1888 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/GenericInputControlReadWorkPackage.hpp -rw-r--r-- root/root 7814 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/GenericInputControlReadWorkPackageDispatcher.hpp -rw-r--r-- root/root 1357 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/GenericInputControlReadWorkPackageReturnInterface.hpp -rw-r--r-- root/root 2373 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/GenericInputControlReorderWorkPackage.hpp -rw-r--r-- root/root 7010 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/GenericInputControlReorderWorkPackageDispatcher.hpp -rw-r--r-- root/root 1536 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/GenericInputControlReorderWorkPackageFinishedInterface.hpp -rw-r--r-- root/root 1378 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/GenericInputControlReorderWorkPackageReturnInterface.hpp -rw-r--r-- root/root 1350 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/GenericInputControlSetMergeStallSlotInterface.hpp -rw-r--r-- root/root 2395 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/GenericInputControlStreamInfo.hpp -rw-r--r-- root/root 1888 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/GenericInputControlSubBlockPending.hpp -rw-r--r-- root/root 1472 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/GenericInputControlSubBlockPendingHeapComparator.hpp -rw-r--r-- root/root 1362 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/GenericInputHeapComparator.hpp -rw-r--r-- root/root 1364 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/GenericInputMergeDecompressedBlockReturnInterface.hpp -rw-r--r-- root/root 2563 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/GenericInputMergeWorkPackage.hpp -rw-r--r-- root/root 9374 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/GenericInputMergeWorkPackageDispatcher.hpp -rw-r--r-- root/root 1426 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/GenericInputMergeWorkPackageReturnInterface.hpp -rw-r--r-- root/root 1042 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/GenericInputMergeWorkRequest.hpp -rw-r--r-- root/root 9897 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/GenericInputSingleData.hpp -rw-r--r-- root/root 6112 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/GenericInputSingleDataBamParseInfo.hpp -rw-r--r-- root/root 1262 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/GetBgzfDeflateZStreamBaseInterface.hpp -rw-r--r-- root/root 3889 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/InputBlock.hpp -rw-r--r-- root/root 1693 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/InputBlockAddPendingInterface.hpp -rw-r--r-- root/root 1226 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/InputBlockAllocator.hpp -rw-r--r-- root/root 1280 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/InputBlockReturnInterface.hpp -rw-r--r-- root/root 1378 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/InputBlockTypeInfo.hpp -rw-r--r-- root/root 1943 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/InputBlockWorkPackage.hpp -rw-r--r-- root/root 4371 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/InputBlockWorkPackageDispatcher.hpp -rw-r--r-- root/root 1341 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/InputBlockWorkPackageReturnInterface.hpp -rw-r--r-- root/root 4530 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/MemInputBlock.hpp -rw-r--r-- root/root 2204 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/MergeSortWorkPackageDispatcher.hpp -rw-r--r-- root/root 1313 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/PairReadEndsContainerFlushFinishedInterface.hpp -rw-r--r-- root/root 2311 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/PairReadEndsContainerFlushWorkPackage.hpp -rw-r--r-- root/root 2710 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/PairReadEndsContainerFlushWorkPackageDispatcher.hpp -rw-r--r-- root/root 1370 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/PairReadEndsContainerFlushWorkPackageReturnInterface.hpp -rw-r--r-- root/root 2593 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/PairReadEndsMergeWorkPackage.hpp -rw-r--r-- root/root 6416 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/PairReadEndsMergeWorkPackageDispatcher.hpp -rw-r--r-- root/root 1317 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/PairReadEndsMergeWorkPackageFinishedInterface.hpp -rw-r--r-- root/root 1307 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/PairReadEndsMergeWorkPackageReturnInterface.hpp -rw-r--r-- root/root 2268 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/ParseBlockWorkPackage.hpp -rw-r--r-- root/root 5166 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/ParseBlockWorkPackageDispatcher.hpp -rw-r--r-- root/root 9851 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/ParseInfo.hpp -rw-r--r-- root/root 1241 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/ParseInfoHeaderCompleteCallback.hpp -rw-r--r-- root/root 1224 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/ParsePackageReturnInterface.hpp -rw-r--r-- root/root 1278 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/ParsedBlockAddPendingInterface.hpp -rw-r--r-- root/root 1261 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/ParsedBlockStallInterface.hpp -rw-r--r-- root/root 1893 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/PushBackSpace.hpp -rw-r--r-- root/root 1268 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/PutBgzfDeflateZStreamBaseInterface.hpp -rw-r--r-- root/root 2246 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/ReadEndsContainerAllocator.hpp -rw-r--r-- root/root 1540 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/ReadEndsContainerFreeListInterface.hpp -rw-r--r-- root/root 1401 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/ReadEndsContainerTypeInfo.hpp -rw-r--r-- root/root 1751 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/ReadEndsMergeRequest.hpp -rw-r--r-- root/root 1623 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/RefIdInterval.hpp -rw-r--r-- root/root 1083 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/RequeReadInterface.hpp -rw-r--r-- root/root 1272 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/ReturnBgzfOutputBufferInterface.hpp -rw-r--r-- root/root 1294 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/ReturnCompressionPendingElementInterface.hpp -rw-r--r-- root/root 1230 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/ReturnRewriteBufferInterface.hpp -rw-r--r-- root/root 2061 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/RewriteBlockWorkPackage.hpp -rw-r--r-- root/root 7605 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/RewriteBlockWorkPackageDispatcher.hpp -rw-r--r-- root/root 1274 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/RewritePackageReturnInterface.hpp -rw-r--r-- root/root 1402 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/SamEncoderObject.hpp -rw-r--r-- root/root 2986 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/SamEncodingWorkPackage.hpp -rw-r--r-- root/root 2068 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/SamEncodingWorkPackageDispatcher.hpp -rw-r--r-- root/root 2223 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/SamEncodingWorkPackageWrapper.hpp -rw-r--r-- root/root 1323 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/SamEncodingWorkPackageWrapperReturnInterface.hpp -rw-r--r-- root/root 1351 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/SamParseDecompressedBlockFinishedInterface.hpp -rw-r--r-- root/root 1223 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/SamParseFragmentParsedInterface.hpp -rw-r--r-- root/root 1205 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/SamParseGetSamInfoInterface.hpp -rw-r--r-- root/root 1473 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/SamParsePending.hpp -rw-r--r-- root/root 1354 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/SamParsePendingHeapComparator.hpp -rw-r--r-- root/root 1209 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/SamParsePutSamInfoInterface.hpp -rw-r--r-- root/root 2387 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/SamParseWorkPackage.hpp -rw-r--r-- root/root 4387 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/SamParseWorkPackageDispatcher.hpp -rw-r--r-- root/root 1252 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/SamParseWorkPackageReturnInterface.hpp -rw-r--r-- root/root 4109 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/ScramCramEncoding.hpp -rw-r--r-- root/root 1495 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/SmallLinearBlockCompressionPendingObject.hpp -rw-r--r-- root/root 1408 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/SmallLinearBlockCompressionPendingObjectFinishedInterface.hpp -rw-r--r-- root/root 1445 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/SmallLinearBlockCompressionPendingObjectHeapComparator.hpp -rw-r--r-- root/root 40507 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/SortControl.hpp -rw-r--r-- root/root 1195 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/SortFinishedInterface.hpp -rw-r--r-- root/root 1306 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/ValidateBlockAddPendingInterface.hpp -rw-r--r-- root/root 1287 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/ValidateBlockFragmentAddPendingInterface.hpp -rw-r--r-- root/root 1326 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/ValidateBlockFragmentPackageReturnInterface.hpp -rw-r--r-- root/root 2199 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/ValidateBlockFragmentWorkPackage.hpp -rw-r--r-- root/root 3179 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/ValidateBlockFragmentWorkPackageDispatcher.hpp -rw-r--r-- root/root 1871 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/ValidateBlockWorkPackage.hpp -rw-r--r-- root/root 2319 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/ValidateBlockWorkPackageDispatcher.hpp -rw-r--r-- root/root 1245 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/ValidatePackageReturnInterface.hpp -rw-r--r-- root/root 1662 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/ValidationFragment.hpp -rw-r--r-- root/root 1813 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/WriteBlockWorkPackage.hpp -rw-r--r-- root/root 3488 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/WriteBlockWorkPackageDispatcher.hpp -rw-r--r-- root/root 1258 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/WriteBlockWorkPackageReturnInterface.hpp -rw-r--r-- root/root 1774 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/WritePendingObject.hpp -rw-r--r-- root/root 1318 2026-08-05 19:59 ./usr/include/libmaus2/bambam/parallel/WritePendingObjectHeapComparator.hpp drwxr-xr-x root/root 0 2026-08-05 19:59 ./usr/include/libmaus2/bed/ -rw-r--r-- root/root 2905 2026-08-05 19:59 ./usr/include/libmaus2/bed/BED.hpp drwxr-xr-x root/root 0 2026-08-05 19:59 ./usr/include/libmaus2/bitbtree/ -rw-r--r-- root/root 60847 2026-08-05 19:59 ./usr/include/libmaus2/bitbtree/bitbtree.hpp drwxr-xr-x root/root 0 2026-08-05 19:59 ./usr/include/libmaus2/bitio/ -rw-r--r-- root/root 9464 2026-08-05 19:59 ./usr/include/libmaus2/bitio/ArrayDecode.hpp -rw-r--r-- root/root 1275 2026-08-05 19:59 ./usr/include/libmaus2/bitio/BitIO.hpp -rw-r--r-- root/root 12338 2026-08-05 19:59 ./usr/include/libmaus2/bitio/BitIOInput.hpp -rw-r--r-- root/root 6236 2026-08-05 19:59 ./usr/include/libmaus2/bitio/BitIOOutput.hpp -rw-r--r-- root/root 1462 2026-08-05 19:59 ./usr/include/libmaus2/bitio/BitSet.hpp -rw-r--r-- root/root 1901 2026-08-05 19:59 ./usr/include/libmaus2/bitio/BitStreamFileDecoder.hpp -rw-r--r-- root/root 11999 2026-08-05 19:59 ./usr/include/libmaus2/bitio/BitVector.hpp -rw-r--r-- root/root 3574 2026-08-05 19:59 ./usr/include/libmaus2/bitio/BitVectorConcat.hpp -rw-r--r-- root/root 5626 2026-08-05 19:59 ./usr/include/libmaus2/bitio/BitVectorInput.hpp -rw-r--r-- root/root 1946 2026-08-05 19:59 ./usr/include/libmaus2/bitio/BitVectorOutput.hpp -rw-r--r-- root/root 4033 2026-08-05 19:59 ./usr/include/libmaus2/bitio/BitWriter.hpp -rw-r--r-- root/root 1770 2026-08-05 19:59 ./usr/include/libmaus2/bitio/BufferIterator.hpp -rw-r--r-- root/root 4026 2026-08-05 19:59 ./usr/include/libmaus2/bitio/CheckedBitWriter.hpp -rw-r--r-- root/root 1783 2026-08-05 19:59 ./usr/include/libmaus2/bitio/Clz.hpp -rw-r--r-- root/root 10046 2026-08-05 19:59 ./usr/include/libmaus2/bitio/CompactArray.hpp -rw-r--r-- root/root 6284 2026-08-05 19:59 ./usr/include/libmaus2/bitio/CompactArrayBase.hpp -rw-r--r-- root/root 2813 2026-08-05 19:59 ./usr/include/libmaus2/bitio/CompactArrayWriter.hpp -rw-r--r-- root/root 3357 2026-08-05 19:59 ./usr/include/libmaus2/bitio/CompactArrayWriterFile.hpp -rw-r--r-- root/root 7853 2026-08-05 19:59 ./usr/include/libmaus2/bitio/CompactDecoderBuffer.hpp -rw-r--r-- root/root 2813 2026-08-05 19:59 ./usr/include/libmaus2/bitio/CompactOffsetArray.hpp -rw-r--r-- root/root 9632 2026-08-05 19:59 ./usr/include/libmaus2/bitio/CompactOffsetOneArray.hpp -rw-r--r-- root/root 11097 2026-08-05 19:59 ./usr/include/libmaus2/bitio/CompactQueue.hpp -rw-r--r-- root/root 2428 2026-08-05 19:59 ./usr/include/libmaus2/bitio/CompactSparseArray.hpp -rw-r--r-- root/root 1852 2026-08-05 19:59 ./usr/include/libmaus2/bitio/Ctz.hpp -rw-r--r-- root/root 6933 2026-08-05 19:59 ./usr/include/libmaus2/bitio/FastWriteBitWriter.hpp -rw-r--r-- root/root 6878 2026-08-05 19:59 ./usr/include/libmaus2/bitio/MarkerFastWriteBitWriter.hpp -rw-r--r-- root/root 6573 2026-08-05 19:59 ./usr/include/libmaus2/bitio/OutputBuffer.hpp -rw-r--r-- root/root 7407 2026-08-05 19:59 ./usr/include/libmaus2/bitio/PacDecoderBuffer.hpp -rw-r--r-- root/root 1725 2026-08-05 19:59 ./usr/include/libmaus2/bitio/ReverseTable.hpp -rw-r--r-- root/root 3831 2026-08-05 19:59 ./usr/include/libmaus2/bitio/SignedCompactArray.hpp -rw-r--r-- root/root 1966 2026-08-05 19:59 ./usr/include/libmaus2/bitio/SwapWordBitBlock.hpp -rw-r--r-- root/root 4116 2026-08-05 19:59 ./usr/include/libmaus2/bitio/getBit.hpp -rw-r--r-- root/root 3716 2026-08-05 19:59 ./usr/include/libmaus2/bitio/getBits.hpp -rw-r--r-- root/root 44632 2026-08-05 19:59 ./usr/include/libmaus2/bitio/putBit.hpp -rw-r--r-- root/root 14622 2026-08-05 19:59 ./usr/include/libmaus2/bitio/putBits.hpp -rw-r--r-- root/root 2255 2026-08-05 19:59 ./usr/include/libmaus2/bitio/readElias.hpp -rw-r--r-- root/root 1601 2026-08-05 19:59 ./usr/include/libmaus2/bitio/swapBitBlocksByReversal.hpp drwxr-xr-x root/root 0 2026-08-05 19:59 ./usr/include/libmaus2/btree/ -rw-r--r-- root/root 11796 2026-08-05 19:59 ./usr/include/libmaus2/btree/btree.hpp drwxr-xr-x root/root 0 2026-08-05 19:59 ./usr/include/libmaus2/clustering/ -rw-r--r-- root/root 30163 2026-08-05 19:59 ./usr/include/libmaus2/clustering/HashCreation.hpp -rw-r--r-- root/root 7909 2026-08-05 19:59 ./usr/include/libmaus2/clustering/HashCreationBase.hpp -rw-r--r-- root/root 19024 2026-08-05 19:59 ./usr/include/libmaus2/clustering/KMeans.hpp -rw-r--r-- root/root 14412 2026-08-05 19:59 ./usr/include/libmaus2/clustering/KmerBase.hpp -rw-r--r-- root/root 2344 2026-08-05 19:59 ./usr/include/libmaus2/clustering/ProduceEdgeRequest.hpp drwxr-xr-x root/root 0 2026-08-05 19:59 ./usr/include/libmaus2/cumfreq/ -rw-r--r-- root/root 2802 2026-08-05 19:59 ./usr/include/libmaus2/cumfreq/DynamicCumulativeFrequencies.hpp -rw-r--r-- root/root 1258 2026-08-05 19:59 ./usr/include/libmaus2/cumfreq/SlowCumFreq.hpp drwxr-xr-x root/root 0 2026-08-05 19:59 ./usr/include/libmaus2/dazzler/ drwxr-xr-x root/root 0 2026-08-05 19:59 ./usr/include/libmaus2/dazzler/align/ -rw-r--r-- root/root 5451 2026-08-05 19:59 ./usr/include/libmaus2/dazzler/align/AlignmentFile.hpp -rw-r--r-- root/root 2576 2026-08-05 19:59 ./usr/include/libmaus2/dazzler/align/AlignmentFileCat.hpp -rw-r--r-- root/root 1336 2026-08-05 19:59 ./usr/include/libmaus2/dazzler/align/AlignmentFileConstants.hpp -rw-r--r-- root/root 2618 2026-08-05 19:59 ./usr/include/libmaus2/dazzler/align/AlignmentFileDecoder.hpp -rw-r--r-- root/root 1842 2026-08-05 19:59 ./usr/include/libmaus2/dazzler/align/AlignmentFileRegion.hpp -rw-r--r-- root/root 9002 2026-08-05 19:59 ./usr/include/libmaus2/dazzler/align/AlignmentFileSymmetryCheck.hpp -rw-r--r-- root/root 3611 2026-08-05 19:59 ./usr/include/libmaus2/dazzler/align/AlignmentSplitWriter.hpp -rw-r--r-- root/root 5087 2026-08-05 19:59 ./usr/include/libmaus2/dazzler/align/AlignmentWriter.hpp -rw-r--r-- root/root 5622 2026-08-05 19:59 ./usr/include/libmaus2/dazzler/align/AlignmentWriterArray.hpp -rw-r--r-- root/root 4741 2026-08-05 19:59 ./usr/include/libmaus2/dazzler/align/ApproximateRun.hpp -rw-r--r-- root/root 2616 2026-08-05 19:59 ./usr/include/libmaus2/dazzler/align/ApproximateRunPartContainer.hpp -rw-r--r-- root/root 3753 2026-08-05 19:59 ./usr/include/libmaus2/dazzler/align/BinIndexDecoder.hpp -rw-r--r-- root/root 2787 2026-08-05 19:59 ./usr/include/libmaus2/dazzler/align/CompactRunPartContainer.hpp -rw-r--r-- root/root 4027 2026-08-05 19:59 ./usr/include/libmaus2/dazzler/align/DalignerIndexDecoder.hpp -rw-r--r-- root/root 3471 2026-08-05 19:59 ./usr/include/libmaus2/dazzler/align/FilterUnique.hpp -rw-r--r-- root/root 53082 2026-08-05 19:59 ./usr/include/libmaus2/dazzler/align/GetTransitiveStrict.hpp -rw-r--r-- root/root 4849 2026-08-05 19:59 ./usr/include/libmaus2/dazzler/align/GraphCheck.hpp -rw-r--r-- root/root 12598 2026-08-05 19:59 ./usr/include/libmaus2/dazzler/align/GraphDecoder.hpp -rw-r--r-- root/root 2323 2026-08-05 19:59 ./usr/include/libmaus2/dazzler/align/GraphDecoderContext.hpp -rw-r--r-- root/root 1232 2026-08-05 19:59 ./usr/include/libmaus2/dazzler/align/GraphDecoderContextAllocator.hpp -rw-r--r-- root/root 1318 2026-08-05 19:59 ./usr/include/libmaus2/dazzler/align/GraphDecoderContextTypeInfo.hpp -rw-r--r-- root/root 33819 2026-08-05 19:59 ./usr/include/libmaus2/dazzler/align/GraphEncoder.hpp -rw-r--r-- root/root 20778 2026-08-05 19:59 ./usr/include/libmaus2/dazzler/align/LASToBamConverterBase.hpp -rw-r--r-- root/root 2128 2026-08-05 19:59 ./usr/include/libmaus2/dazzler/align/LasFileRange.hpp -rw-r--r-- root/root 19003 2026-08-05 19:59 ./usr/include/libmaus2/dazzler/align/LasIntervals.hpp -rw-r--r-- root/root 5063 2026-08-05 19:59 ./usr/include/libmaus2/dazzler/align/LasMerge2.hpp -rw-r--r-- root/root 4925 2026-08-05 19:59 ./usr/include/libmaus2/dazzler/align/LasRangeDecoder.hpp -rw-r--r-- root/root 8231 2026-08-05 19:59 ./usr/include/libmaus2/dazzler/align/LasSort2.hpp -rw-r--r-- root/root 8517 2026-08-05 19:59 ./usr/include/libmaus2/dazzler/align/LasSort2Cascade.hpp -rw-r--r-- root/root 59562 2026-08-05 19:59 ./usr/include/libmaus2/dazzler/align/Overlap.hpp -rw-r--r-- root/root 1635 2026-08-05 19:59 ./usr/include/libmaus2/dazzler/align/OverlapAdapter.hpp -rw-r--r-- root/root 29209 2026-08-05 19:59 ./usr/include/libmaus2/dazzler/align/OverlapData.hpp -rw-r--r-- root/root 14631 2026-08-05 19:59 ./usr/include/libmaus2/dazzler/align/OverlapDataInterface.hpp -rw-r--r-- root/root 2148 2026-08-05 19:59 ./usr/include/libmaus2/dazzler/align/OverlapHeader.hpp -rw-r--r-- root/root 1598 2026-08-05 19:59 ./usr/include/libmaus2/dazzler/align/OverlapHeapComparator.hpp -rw-r--r-- root/root 32302 2026-08-05 19:59 ./usr/include/libmaus2/dazzler/align/OverlapIndexer.hpp -rw-r--r-- root/root 1045 2026-08-05 19:59 ./usr/include/libmaus2/dazzler/align/OverlapIndexerBase.hpp -rw-r--r-- root/root 5831 2026-08-05 19:59 ./usr/include/libmaus2/dazzler/align/OverlapInfo.hpp -rw-r--r-- root/root 2117 2026-08-05 19:59 ./usr/include/libmaus2/dazzler/align/OverlapInfoIndexer.hpp -rw-r--r-- root/root 4240 2026-08-05 19:59 ./usr/include/libmaus2/dazzler/align/OverlapMeta.hpp -rw-r--r-- root/root 4042 2026-08-05 19:59 ./usr/include/libmaus2/dazzler/align/OverlapMetaIteratorGet.hpp -rw-r--r-- root/root 15177 2026-08-05 19:59 ./usr/include/libmaus2/dazzler/align/OverlapParser.hpp -rw-r--r-- root/root 14212 2026-08-05 19:59 ./usr/include/libmaus2/dazzler/align/OverlapProperCheck.hpp -rw-r--r-- root/root 20833 2026-08-05 19:59 ./usr/include/libmaus2/dazzler/align/Path.hpp -rw-r--r-- root/root 7795 2026-08-05 19:59 ./usr/include/libmaus2/dazzler/align/ReadIntervals.hpp -rw-r--r-- root/root 7494 2026-08-05 19:59 ./usr/include/libmaus2/dazzler/align/ReadIntervalsVector.hpp -rw-r--r-- root/root 2091 2026-08-05 19:59 ./usr/include/libmaus2/dazzler/align/RefMapEntry.hpp -rw-r--r-- root/root 7698 2026-08-05 19:59 ./usr/include/libmaus2/dazzler/align/RefMapEntryVector.hpp -rw-r--r-- root/root 9387 2026-08-05 19:59 ./usr/include/libmaus2/dazzler/align/SimpleOverlapParser.hpp -rw-r--r-- root/root 2537 2026-08-05 19:59 ./usr/include/libmaus2/dazzler/align/SimpleOverlapVectorParser.hpp -rw-r--r-- root/root 3802 2026-08-05 19:59 ./usr/include/libmaus2/dazzler/align/SortOrderCheck.hpp -rw-r--r-- root/root 2908 2026-08-05 19:59 ./usr/include/libmaus2/dazzler/align/SortingOverlapBlockInput.hpp -rw-r--r-- root/root 30218 2026-08-05 19:59 ./usr/include/libmaus2/dazzler/align/SortingOverlapOutputBuffer.hpp -rw-r--r-- root/root 3041 2026-08-05 19:59 ./usr/include/libmaus2/dazzler/align/SortingOverlapOutputBufferMerger.hpp -rw-r--r-- root/root 1303 2026-08-05 19:59 ./usr/include/libmaus2/dazzler/align/SubIntervalResult.hpp -rw-r--r-- root/root 2997 2026-08-05 19:59 ./usr/include/libmaus2/dazzler/align/Tandem.hpp -rw-r--r-- root/root 2288 2026-08-05 19:59 ./usr/include/libmaus2/dazzler/align/TandemVector.hpp -rw-r--r-- root/root 2517 2026-08-05 19:59 ./usr/include/libmaus2/dazzler/align/TandemVectorPartContainer.hpp -rw-r--r-- root/root 2344 2026-08-05 19:59 ./usr/include/libmaus2/dazzler/align/TraceBlock.hpp -rw-r--r-- root/root 1777 2026-08-05 19:59 ./usr/include/libmaus2/dazzler/align/TraceBlockVectorCache.hpp -rw-r--r-- root/root 1663 2026-08-05 19:59 ./usr/include/libmaus2/dazzler/align/TracePoint.hpp -rw-r--r-- root/root 14086 2026-08-05 19:59 ./usr/include/libmaus2/dazzler/align/TrueOverlap.hpp -rw-r--r-- root/root 1833 2026-08-05 19:59 ./usr/include/libmaus2/dazzler/align/TrueOverlapStats.hpp drwxr-xr-x root/root 0 2026-08-05 19:59 ./usr/include/libmaus2/dazzler/db/ -rw-r--r-- root/root 121935 2026-08-05 19:59 ./usr/include/libmaus2/dazzler/db/DatabaseFile.hpp -rw-r--r-- root/root 1361 2026-08-05 19:59 ./usr/include/libmaus2/dazzler/db/FastaInfo.hpp -rw-r--r-- root/root 1137 2026-08-05 19:59 ./usr/include/libmaus2/dazzler/db/GetByteCounter.hpp -rw-r--r-- root/root 2657 2026-08-05 19:59 ./usr/include/libmaus2/dazzler/db/IQVDecoder.hpp -rw-r--r-- root/root 5246 2026-08-05 19:59 ./usr/include/libmaus2/dazzler/db/IndexBase.hpp -rw-r--r-- root/root 4884 2026-08-05 19:59 ./usr/include/libmaus2/dazzler/db/InputBase.hpp -rw-r--r-- root/root 4731 2026-08-05 19:59 ./usr/include/libmaus2/dazzler/db/InqualContainer.hpp -rw-r--r-- root/root 4373 2026-08-05 19:59 ./usr/include/libmaus2/dazzler/db/OutputBase.hpp -rw-r--r-- root/root 2211 2026-08-05 19:59 ./usr/include/libmaus2/dazzler/db/PartTrackContainer.hpp -rw-r--r-- root/root 4991 2026-08-05 19:59 ./usr/include/libmaus2/dazzler/db/Read.hpp -rw-r--r-- root/root 4735 2026-08-05 19:59 ./usr/include/libmaus2/dazzler/db/ReadContainer.hpp -rw-r--r-- root/root 2141 2026-08-05 19:59 ./usr/include/libmaus2/dazzler/db/ReadLRUContainer.hpp -rw-r--r-- root/root 3483 2026-08-05 19:59 ./usr/include/libmaus2/dazzler/db/SatsContainer.hpp -rw-r--r-- root/root 2582 2026-08-05 19:59 ./usr/include/libmaus2/dazzler/db/StringTrackWriter.hpp -rw-r--r-- root/root 2470 2026-08-05 19:59 ./usr/include/libmaus2/dazzler/db/Track.hpp -rw-r--r-- root/root 1932 2026-08-05 19:59 ./usr/include/libmaus2/dazzler/db/TrackAnno.hpp -rw-r--r-- root/root 1314 2026-08-05 19:59 ./usr/include/libmaus2/dazzler/db/TrackAnnoInterface.hpp -rw-r--r-- root/root 1870 2026-08-05 19:59 ./usr/include/libmaus2/dazzler/db/TrackExtra.hpp drwxr-xr-x root/root 0 2026-08-05 19:59 ./usr/include/libmaus2/dazzler/stringgraph/ -rw-r--r-- root/root 3886 2026-08-05 19:59 ./usr/include/libmaus2/dazzler/stringgraph/ContainmentInfo.hpp -rw-r--r-- root/root 2577 2026-08-05 19:59 ./usr/include/libmaus2/dazzler/stringgraph/Edge.hpp -rw-r--r-- root/root 3369 2026-08-05 19:59 ./usr/include/libmaus2/dazzler/stringgraph/OverlapNode.hpp -rw-r--r-- root/root 6442 2026-08-05 19:59 ./usr/include/libmaus2/dazzler/stringgraph/StringGraph.hpp -rw-r--r-- root/root 1693 2026-08-05 19:59 ./usr/include/libmaus2/dazzler/stringgraph/TraversalElement.hpp drwxr-xr-x root/root 0 2026-08-05 19:59 ./usr/include/libmaus2/deleter/ -rw-r--r-- root/root 996 2026-08-05 19:59 ./usr/include/libmaus2/deleter/Deleter.hpp drwxr-xr-x root/root 0 2026-08-05 19:59 ./usr/include/libmaus2/demangle/ -rw-r--r-- root/root 1535 2026-08-05 19:59 ./usr/include/libmaus2/demangle/Demangle.hpp drwxr-xr-x root/root 0 2026-08-05 19:59 ./usr/include/libmaus2/digest/ -rw-r--r-- root/root 1507 2026-08-05 19:59 ./usr/include/libmaus2/digest/CRC32.hpp -rw-r--r-- root/root 1390 2026-08-05 19:59 ./usr/include/libmaus2/digest/CRC32C.hpp -rw-r--r-- root/root 1060 2026-08-05 19:59 ./usr/include/libmaus2/digest/CRC32C_Core.hpp -rw-r--r-- root/root 1056 2026-08-05 19:59 ./usr/include/libmaus2/digest/CRC32_Core.hpp -rw-r--r-- root/root 4084 2026-08-05 19:59 ./usr/include/libmaus2/digest/DigestBase.hpp -rw-r--r-- root/root 3589 2026-08-05 19:59 ./usr/include/libmaus2/digest/DigestFactory.hpp -rw-r--r-- root/root 3428 2026-08-05 19:59 ./usr/include/libmaus2/digest/DigestFactoryContainer.hpp -rw-r--r-- root/root 1472 2026-08-05 19:59 ./usr/include/libmaus2/digest/DigestFactoryInterface.hpp -rw-r--r-- root/root 2049 2026-08-05 19:59 ./usr/include/libmaus2/digest/DigestInterface.hpp -rw-r--r-- root/root 1288 2026-08-05 19:59 ./usr/include/libmaus2/digest/Digests.hpp -rw-r--r-- root/root 6871 2026-08-05 19:59 ./usr/include/libmaus2/digest/MurmurHash3_x64_128.hpp -rw-r--r-- root/root 1337 2026-08-05 19:59 ./usr/include/libmaus2/digest/Null.hpp -rw-r--r-- root/root 1362 2026-08-05 19:59 ./usr/include/libmaus2/digest/SHA1.hpp -rw-r--r-- root/root 1386 2026-08-05 19:59 ./usr/include/libmaus2/digest/SHA2_224.hpp -rw-r--r-- root/root 1386 2026-08-05 19:59 ./usr/include/libmaus2/digest/SHA2_256.hpp -rw-r--r-- root/root 1387 2026-08-05 19:59 ./usr/include/libmaus2/digest/SHA2_384.hpp -rw-r--r-- root/root 1387 2026-08-05 19:59 ./usr/include/libmaus2/digest/SHA2_512.hpp -rw-r--r-- root/root 1386 2026-08-05 19:59 ./usr/include/libmaus2/digest/SHA3_256.hpp -rw-r--r-- root/root 3512 2026-08-05 19:59 ./usr/include/libmaus2/digest/md5.h -rw-r--r-- root/root 2046 2026-08-05 19:59 ./usr/include/libmaus2/digest/md5.hpp drwxr-xr-x root/root 0 2026-08-05 19:59 ./usr/include/libmaus2/eta/ -rw-r--r-- root/root 2208 2026-08-05 19:59 ./usr/include/libmaus2/eta/LinearETA.hpp drwxr-xr-x root/root 0 2026-08-05 19:59 ./usr/include/libmaus2/exception/ -rw-r--r-- root/root 1701 2026-08-05 19:59 ./usr/include/libmaus2/exception/LibMausException.hpp drwxr-xr-x root/root 0 2026-08-05 19:59 ./usr/include/libmaus2/fastx/ -rw-r--r-- root/root 1280 2026-08-05 19:59 ./usr/include/libmaus2/fastx/BgzfFastAIndexEntry.hpp -rw-r--r-- root/root 1163 2026-08-05 19:59 ./usr/include/libmaus2/fastx/BgzfFastAIndexEntryIdComparator.hpp -rw-r--r-- root/root 1173 2026-08-05 19:59 ./usr/include/libmaus2/fastx/BgzfFastAIndexEntryNameComparator.hpp -rw-r--r-- root/root 5803 2026-08-05 19:59 ./usr/include/libmaus2/fastx/CharBuffer.hpp -rw-r--r-- root/root 1428 2026-08-05 19:59 ./usr/include/libmaus2/fastx/CharTermTable.hpp -rw-r--r-- root/root 11227 2026-08-05 19:59 ./usr/include/libmaus2/fastx/CompactFastDecoder.hpp -rw-r--r-- root/root 10647 2026-08-05 19:59 ./usr/include/libmaus2/fastx/CompactFastDecoderBase.hpp -rw-r--r-- root/root 6676 2026-08-05 19:59 ./usr/include/libmaus2/fastx/CompactFastEncoder.hpp -rw-r--r-- root/root 10385 2026-08-05 19:59 ./usr/include/libmaus2/fastx/CompactFastQBlockGenerator.hpp -rw-r--r-- root/root 4104 2026-08-05 19:59 ./usr/include/libmaus2/fastx/CompactFastQContainer.hpp -rw-r--r-- root/root 2246 2026-08-05 19:59 ./usr/include/libmaus2/fastx/CompactFastQContainerDictionary.hpp -rw-r--r-- root/root 3663 2026-08-05 19:59 ./usr/include/libmaus2/fastx/CompactFastQContainerDictionaryCreator.hpp -rw-r--r-- root/root 1350 2026-08-05 19:59 ./usr/include/libmaus2/fastx/CompactFastQContext.hpp -rw-r--r-- root/root 2967 2026-08-05 19:59 ./usr/include/libmaus2/fastx/CompactFastQDecoderBase.hpp -rw-r--r-- root/root 1948 2026-08-05 19:59 ./usr/include/libmaus2/fastx/CompactFastQHeader.hpp -rw-r--r-- root/root 5066 2026-08-05 19:59 ./usr/include/libmaus2/fastx/CompactFastQMultiBlockReader.hpp -rw-r--r-- root/root 2424 2026-08-05 19:59 ./usr/include/libmaus2/fastx/CompactFastQSingleBlockReader.hpp -rw-r--r-- root/root 2630 2026-08-05 19:59 ./usr/include/libmaus2/fastx/CompactFastReplace.hpp -rw-r--r-- root/root 1038 2026-08-05 19:59 ./usr/include/libmaus2/fastx/CompactFastTerminator.hpp -rw-r--r-- root/root 6954 2026-08-05 19:59 ./usr/include/libmaus2/fastx/CompactReadContainer.hpp -rw-r--r-- root/root 1773 2026-08-05 19:59 ./usr/include/libmaus2/fastx/ComputeFastXIntervals.hpp -rw-r--r-- root/root 13752 2026-08-05 19:59 ./usr/include/libmaus2/fastx/ConcatWriter.hpp -rw-r--r-- root/root 2323 2026-08-05 19:59 ./usr/include/libmaus2/fastx/CoordinateCache.hpp -rw-r--r-- root/root 2363 2026-08-05 19:59 ./usr/include/libmaus2/fastx/CoordinateCacheBiDir.hpp -rw-r--r-- root/root 6091 2026-08-05 19:59 ./usr/include/libmaus2/fastx/DNAIndexMetaData.hpp -rw-r--r-- root/root 2959 2026-08-05 19:59 ./usr/include/libmaus2/fastx/DNAIndexMetaDataBigBand.hpp -rw-r--r-- root/root 7127 2026-08-05 19:59 ./usr/include/libmaus2/fastx/DNAIndexMetaDataBigBandBiDir.hpp -rw-r--r-- root/root 1716 2026-08-05 19:59 ./usr/include/libmaus2/fastx/DNAIndexMetaDataSequence.hpp -rw-r--r-- root/root 2280 2026-08-05 19:59 ./usr/include/libmaus2/fastx/FASTQEntry.hpp -rw-r--r-- root/root 1275 2026-08-05 19:59 ./usr/include/libmaus2/fastx/FastABPConstants.hpp -rw-r--r-- root/root 10191 2026-08-05 19:59 ./usr/include/libmaus2/fastx/FastABPGenerator.hpp -rw-r--r-- root/root 1765 2026-08-05 19:59 ./usr/include/libmaus2/fastx/FastABgzfDecoder.hpp -rw-r--r-- root/root 6625 2026-08-05 19:59 ./usr/include/libmaus2/fastx/FastABgzfDecoderBuffer.hpp -rw-r--r-- root/root 4010 2026-08-05 19:59 ./usr/include/libmaus2/fastx/FastABgzfIndex.hpp -rw-r--r-- root/root 1932 2026-08-05 19:59 ./usr/include/libmaus2/fastx/FastABgzfIndexEntry.hpp -rw-r--r-- root/root 1482 2026-08-05 19:59 ./usr/include/libmaus2/fastx/FastADefinedBasesTable.hpp -rw-r--r-- root/root 11357 2026-08-05 19:59 ./usr/include/libmaus2/fastx/FastAIndex.hpp -rw-r--r-- root/root 2626 2026-08-05 19:59 ./usr/include/libmaus2/fastx/FastAIndexEntry.hpp -rw-r--r-- root/root 5451 2026-08-05 19:59 ./usr/include/libmaus2/fastx/FastAIndexGenerator.hpp -rw-r--r-- root/root 2578 2026-08-05 19:59 ./usr/include/libmaus2/fastx/FastAInfo.hpp -rw-r--r-- root/root 4153 2026-08-05 19:59 ./usr/include/libmaus2/fastx/FastALineParser.hpp -rw-r--r-- root/root 1436 2026-08-05 19:59 ./usr/include/libmaus2/fastx/FastALineParserLineInfo.hpp -rw-r--r-- root/root 1430 2026-08-05 19:59 ./usr/include/libmaus2/fastx/FastAMapTable.hpp -rw-r--r-- root/root 2277 2026-08-05 19:59 ./usr/include/libmaus2/fastx/FastAMatchTable.hpp -rw-r--r-- root/root 39037 2026-08-05 19:59 ./usr/include/libmaus2/fastx/FastAReader.hpp -rw-r--r-- root/root 13394 2026-08-05 19:59 ./usr/include/libmaus2/fastx/FastAReaderSplit.hpp -rw-r--r-- root/root 1466 2026-08-05 19:59 ./usr/include/libmaus2/fastx/FastAStream.hpp -rw-r--r-- root/root 7911 2026-08-05 19:59 ./usr/include/libmaus2/fastx/FastAStreamSet.hpp -rw-r--r-- root/root 3971 2026-08-05 19:59 ./usr/include/libmaus2/fastx/FastAStreamWrapper.hpp -rw-r--r-- root/root 1174 2026-08-05 19:59 ./usr/include/libmaus2/fastx/FastAToCompact4BigBand.hpp -rw-r--r-- root/root 20138 2026-08-05 19:59 ./usr/include/libmaus2/fastx/FastAToCompact4BigBandBiDir.hpp -rw-r--r-- root/root 1810 2026-08-05 19:59 ./usr/include/libmaus2/fastx/FastATwoBitTable.hpp -rw-r--r-- root/root 2065 2026-08-05 19:59 ./usr/include/libmaus2/fastx/FastFirstToLastReverseAdapter.hpp -rw-r--r-- root/root 1587 2026-08-05 19:59 ./usr/include/libmaus2/fastx/FastIDBlock.hpp -rw-r--r-- root/root 7924 2026-08-05 19:59 ./usr/include/libmaus2/fastx/FastInterval.hpp -rw-r--r-- root/root 10114 2026-08-05 19:59 ./usr/include/libmaus2/fastx/FastQBgzfWriter.hpp -rw-r--r-- root/root 3268 2026-08-05 19:59 ./usr/include/libmaus2/fastx/FastQElement.hpp -rw-r--r-- root/root 46328 2026-08-05 19:59 ./usr/include/libmaus2/fastx/FastQReader.hpp -rw-r--r-- root/root 15575 2026-08-05 19:59 ./usr/include/libmaus2/fastx/FastQReaderSplit.hpp -rw-r--r-- root/root 18785 2026-08-05 19:59 ./usr/include/libmaus2/fastx/FastaBPDecoder.hpp -rw-r--r-- root/root 8640 2026-08-05 19:59 ./usr/include/libmaus2/fastx/FastaBPSequenceDecoder.hpp -rw-r--r-- root/root 1923 2026-08-05 19:59 ./usr/include/libmaus2/fastx/FastaPeeker.hpp -rw-r--r-- root/root 2183 2026-08-05 19:59 ./usr/include/libmaus2/fastx/FastqPeeker.hpp -rw-r--r-- root/root 1330 2026-08-05 19:59 ./usr/include/libmaus2/fastx/FirstWhiteSpaceSlashStrip.hpp -rw-r--r-- root/root 20598 2026-08-05 19:59 ./usr/include/libmaus2/fastx/FqWeightQuantiser.hpp -rw-r--r-- root/root 2719 2026-08-05 19:59 ./usr/include/libmaus2/fastx/GCContent.hpp -rw-r--r-- root/root 2319 2026-08-05 19:59 ./usr/include/libmaus2/fastx/GzipFileFastQReader.hpp -rw-r--r-- root/root 2498 2026-08-05 19:59 ./usr/include/libmaus2/fastx/GzipStreamFastQReader.hpp -rw-r--r-- root/root 26260 2026-08-05 19:59 ./usr/include/libmaus2/fastx/KmerCount.hpp -rw-r--r-- root/root 3084 2026-08-05 19:59 ./usr/include/libmaus2/fastx/KmerFreqInWindowStats.hpp -rw-r--r-- root/root 5086 2026-08-05 19:59 ./usr/include/libmaus2/fastx/KmerRepeatDetector.hpp -rw-r--r-- root/root 8242 2026-08-05 19:59 ./usr/include/libmaus2/fastx/LineBufferFastAReader.hpp -rw-r--r-- root/root 5798 2026-08-05 19:59 ./usr/include/libmaus2/fastx/MultiWordDNABitBuffer.hpp -rw-r--r-- root/root 5317 2026-08-05 19:59 ./usr/include/libmaus2/fastx/NameInfo.hpp -rw-r--r-- root/root 1911 2026-08-05 19:59 ./usr/include/libmaus2/fastx/NameInfoBase.hpp -rw-r--r-- root/root 13211 2026-08-05 19:59 ./usr/include/libmaus2/fastx/Pattern.hpp -rw-r--r-- root/root 1384 2026-08-05 19:59 ./usr/include/libmaus2/fastx/PatternBlock.hpp -rw-r--r-- root/root 1221 2026-08-05 19:59 ./usr/include/libmaus2/fastx/Phred.hpp -rw-r--r-- root/root 25036 2026-08-05 19:59 ./usr/include/libmaus2/fastx/QReorder.hpp -rw-r--r-- root/root 2147 2026-08-05 19:59 ./usr/include/libmaus2/fastx/ReadContainer.hpp -rw-r--r-- root/root 2415 2026-08-05 19:59 ./usr/include/libmaus2/fastx/RefPathLookup.hpp -rw-r--r-- root/root 1377 2026-08-05 19:59 ./usr/include/libmaus2/fastx/RefPathToken.hpp -rw-r--r-- root/root 3300 2026-08-05 19:59 ./usr/include/libmaus2/fastx/RefPathTokenVector.hpp -rw-r--r-- root/root 2066 2026-08-05 19:59 ./usr/include/libmaus2/fastx/RefPathTokenVectorSequence.hpp -rw-r--r-- root/root 6579 2026-08-05 19:59 ./usr/include/libmaus2/fastx/SingleWordDNABitBuffer.hpp -rw-r--r-- root/root 1170 2026-08-05 19:59 ./usr/include/libmaus2/fastx/SlashStrip.hpp -rw-r--r-- root/root 1656 2026-08-05 19:59 ./usr/include/libmaus2/fastx/SpaceTable.hpp -rw-r--r-- root/root 1470 2026-08-05 19:59 ./usr/include/libmaus2/fastx/StreamFastAReader.hpp -rw-r--r-- root/root 1823 2026-08-05 19:59 ./usr/include/libmaus2/fastx/StreamFastQReader.hpp -rw-r--r-- root/root 3407 2026-08-05 19:59 ./usr/include/libmaus2/fastx/StreamFastReaderBase.hpp -rw-r--r-- root/root 5813 2026-08-05 19:59 ./usr/include/libmaus2/fastx/SubSamplingFastReader.hpp -rw-r--r-- root/root 5004 2026-08-05 19:59 ./usr/include/libmaus2/fastx/acgtnMap.hpp -rw-r--r-- root/root 1915 2026-08-05 19:59 ./usr/include/libmaus2/fastx/isFastQ.hpp drwxr-xr-x root/root 0 2026-08-05 19:59 ./usr/include/libmaus2/fm/ -rw-r--r-- root/root 2779 2026-08-05 19:59 ./usr/include/libmaus2/fm/BiIndex.hpp -rw-r--r-- root/root 26882 2026-08-05 19:59 ./usr/include/libmaus2/fm/BidirectionalDnaIndexTemplate.hpp -rw-r--r-- root/root 1890 2026-08-05 19:59 ./usr/include/libmaus2/fm/BidirectionalIndexInterval.hpp -rw-r--r-- root/root 1516 2026-08-05 19:59 ./usr/include/libmaus2/fm/BidirectionalIndexIntervalSymbol.hpp -rw-r--r-- root/root 979 2026-08-05 19:59 ./usr/include/libmaus2/fm/DictionaryInfo.hpp -rw-r--r-- root/root 1298 2026-08-05 19:59 ./usr/include/libmaus2/fm/DictionaryInfoImpCompactHuffmanWaveletTree.hpp -rw-r--r-- root/root 4438 2026-08-05 19:59 ./usr/include/libmaus2/fm/FA4CompactSampledSuffixArray.hpp -rw-r--r-- root/root 31522 2026-08-05 19:59 ./usr/include/libmaus2/fm/FM.hpp -rw-r--r-- root/root 4172 2026-08-05 19:59 ./usr/include/libmaus2/fm/KmerCache.hpp -rw-r--r-- root/root 1954 2026-08-05 19:59 ./usr/include/libmaus2/fm/MausFmToBwaConversion.hpp -rw-r--r-- root/root 13032 2026-08-05 19:59 ./usr/include/libmaus2/fm/SampledISA.hpp -rw-r--r-- root/root 10203 2026-08-05 19:59 ./usr/include/libmaus2/fm/SampledSA.hpp drwxr-xr-x root/root 0 2026-08-05 19:59 ./usr/include/libmaus2/gamma/ -rw-r--r-- root/root 4025 2026-08-05 19:59 ./usr/include/libmaus2/gamma/FlaggedInterval.hpp -rw-r--r-- root/root 4755 2026-08-05 19:59 ./usr/include/libmaus2/gamma/GammaDecoder.hpp -rw-r--r-- root/root 2104 2026-08-05 19:59 ./usr/include/libmaus2/gamma/GammaDecoderBase.hpp -rw-r--r-- root/root 4529 2026-08-05 19:59 ./usr/include/libmaus2/gamma/GammaDifferenceDecoder.hpp -rw-r--r-- root/root 4081 2026-08-05 19:59 ./usr/include/libmaus2/gamma/GammaDifferenceEncoder.hpp -rw-r--r-- root/root 7758 2026-08-05 19:59 ./usr/include/libmaus2/gamma/GammaDifferenceMerge.hpp -rw-r--r-- root/root 1860 2026-08-05 19:59 ./usr/include/libmaus2/gamma/GammaDifferenceOutputBuffer.hpp -rw-r--r-- root/root 4016 2026-08-05 19:59 ./usr/include/libmaus2/gamma/GammaEncoder.hpp -rw-r--r-- root/root 2790 2026-08-05 19:59 ./usr/include/libmaus2/gamma/GammaEncoderBase.hpp -rw-r--r-- root/root 12191 2026-08-05 19:59 ./usr/include/libmaus2/gamma/GammaFlaggedIntervalDecoder.hpp -rw-r--r-- root/root 6316 2026-08-05 19:59 ./usr/include/libmaus2/gamma/GammaFlaggedIntervalEncoder.hpp -rw-r--r-- root/root 5935 2026-08-05 19:59 ./usr/include/libmaus2/gamma/GammaFlaggedPartitionDecoder.hpp -rw-r--r-- root/root 4844 2026-08-05 19:59 ./usr/include/libmaus2/gamma/GammaFlaggedPartitionEncoder.hpp -rw-r--r-- root/root 11661 2026-08-05 19:59 ./usr/include/libmaus2/gamma/GammaGapDecoder.hpp -rw-r--r-- root/root 9365 2026-08-05 19:59 ./usr/include/libmaus2/gamma/GammaGapEncoder.hpp -rw-r--r-- root/root 1794 2026-08-05 19:59 ./usr/include/libmaus2/gamma/GammaGenericBase.hpp -rw-r--r-- root/root 2286 2026-08-05 19:59 ./usr/include/libmaus2/gamma/GammaGenericClz.hpp -rw-r--r-- root/root 2959 2026-08-05 19:59 ./usr/include/libmaus2/gamma/GammaGenericDecoder.hpp -rw-r--r-- root/root 3476 2026-08-05 19:59 ./usr/include/libmaus2/gamma/GammaGenericEncoder.hpp -rw-r--r-- root/root 5828 2026-08-05 19:59 ./usr/include/libmaus2/gamma/GammaIntervalDecoder.hpp -rw-r--r-- root/root 4331 2026-08-05 19:59 ./usr/include/libmaus2/gamma/GammaIntervalEncoder.hpp -rw-r--r-- root/root 6383 2026-08-05 19:59 ./usr/include/libmaus2/gamma/GammaPDDecoder.hpp -rw-r--r-- root/root 4049 2026-08-05 19:59 ./usr/include/libmaus2/gamma/GammaPDEncoder.hpp -rw-r--r-- root/root 4940 2026-08-05 19:59 ./usr/include/libmaus2/gamma/GammaPDIndexDecoder.hpp -rw-r--r-- root/root 2405 2026-08-05 19:59 ./usr/include/libmaus2/gamma/GammaPDIndexDecoderBase.hpp -rw-r--r-- root/root 5214 2026-08-05 19:59 ./usr/include/libmaus2/gamma/GammaPartitionDecoder.hpp -rw-r--r-- root/root 4211 2026-08-05 19:59 ./usr/include/libmaus2/gamma/GammaPartitionEncoder.hpp -rw-r--r-- root/root 9849 2026-08-05 19:59 ./usr/include/libmaus2/gamma/GammaRLDecoder.hpp -rw-r--r-- root/root 8035 2026-08-05 19:59 ./usr/include/libmaus2/gamma/GammaRLEncoder.hpp -rw-r--r-- root/root 1179 2026-08-05 19:59 ./usr/include/libmaus2/gamma/Interval.hpp -rw-r--r-- root/root 1810 2026-08-05 19:59 ./usr/include/libmaus2/gamma/SimpleGammaDecoder.hpp -rw-r--r-- root/root 1846 2026-08-05 19:59 ./usr/include/libmaus2/gamma/SimpleGammaDecoderData.hpp -rw-r--r-- root/root 2056 2026-08-05 19:59 ./usr/include/libmaus2/gamma/SimpleGammaEncoder.hpp -rw-r--r-- root/root 2974 2026-08-05 19:59 ./usr/include/libmaus2/gamma/SimpleGammaEncoderArray.hpp -rw-r--r-- root/root 1932 2026-08-05 19:59 ./usr/include/libmaus2/gamma/SimpleGammaEncoderData.hpp -rw-r--r-- root/root 6913 2026-08-05 19:59 ./usr/include/libmaus2/gamma/SparseGammaGapBlockEncoder.hpp -rw-r--r-- root/root 10699 2026-08-05 19:59 ./usr/include/libmaus2/gamma/SparseGammaGapConcatDecoder.hpp -rw-r--r-- root/root 3548 2026-08-05 19:59 ./usr/include/libmaus2/gamma/SparseGammaGapDecoder.hpp -rw-r--r-- root/root 2903 2026-08-05 19:59 ./usr/include/libmaus2/gamma/SparseGammaGapEncoder.hpp -rw-r--r-- root/root 1502 2026-08-05 19:59 ./usr/include/libmaus2/gamma/SparseGammaGapFile.hpp -rw-r--r-- root/root 4902 2026-08-05 19:59 ./usr/include/libmaus2/gamma/SparseGammaGapFileIndexDecoder.hpp -rw-r--r-- root/root 1505 2026-08-05 19:59 ./usr/include/libmaus2/gamma/SparseGammaGapFileIndexDecoderEntry.hpp -rw-r--r-- root/root 10911 2026-08-05 19:59 ./usr/include/libmaus2/gamma/SparseGammaGapFileIndexMultiDecoder.hpp -rw-r--r-- root/root 6178 2026-08-05 19:59 ./usr/include/libmaus2/gamma/SparseGammaGapFileLevelSet.hpp -rw-r--r-- root/root 4710 2026-08-05 19:59 ./usr/include/libmaus2/gamma/SparseGammaGapFileSet.hpp -rw-r--r-- root/root 16239 2026-08-05 19:59 ./usr/include/libmaus2/gamma/SparseGammaGapMerge.hpp -rw-r--r-- root/root 1834 2026-08-05 19:59 ./usr/include/libmaus2/gamma/SparseGammaGapMultiFile.hpp -rw-r--r-- root/root 17235 2026-08-05 19:59 ./usr/include/libmaus2/gamma/SparseGammaGapMultiFileLevelSet.hpp -rw-r--r-- root/root 5975 2026-08-05 19:59 ./usr/include/libmaus2/gamma/SparseGammaGapMultiFileSet.hpp drwxr-xr-x root/root 0 2026-08-05 19:59 ./usr/include/libmaus2/geometry/ -rw-r--r-- root/root 10263 2026-08-05 19:59 ./usr/include/libmaus2/geometry/IntervalTree.hpp -rw-r--r-- root/root 17699 2026-08-05 19:59 ./usr/include/libmaus2/geometry/RangeSet.hpp drwxr-xr-x root/root 0 2026-08-05 19:59 ./usr/include/libmaus2/graph/ -rw-r--r-- root/root 1083 2026-08-05 19:59 ./usr/include/libmaus2/graph/IdentityTargetProjector.hpp -rw-r--r-- root/root 1828 2026-08-05 19:59 ./usr/include/libmaus2/graph/ReachableVertices.hpp -rw-r--r-- root/root 15913 2026-08-05 19:59 ./usr/include/libmaus2/graph/StronglyConnectedComponents.hpp -rw-r--r-- root/root 3303 2026-08-05 19:59 ./usr/include/libmaus2/graph/TopologicalSorting.hpp drwxr-xr-x root/root 0 2026-08-05 19:59 ./usr/include/libmaus2/gtf/ -rw-r--r-- root/root 2252 2026-08-05 19:59 ./usr/include/libmaus2/gtf/BAMGTFMap.hpp -rw-r--r-- root/root 2468 2026-08-05 19:59 ./usr/include/libmaus2/gtf/CDS.hpp -rw-r--r-- root/root 3949 2026-08-05 19:59 ./usr/include/libmaus2/gtf/Exon.hpp -rw-r--r-- root/root 1037 2026-08-05 19:59 ./usr/include/libmaus2/gtf/ExonIdOffsetComparator.hpp -rw-r--r-- root/root 1603 2026-08-05 19:59 ./usr/include/libmaus2/gtf/ExonInfo.hpp -rw-r--r-- root/root 1721 2026-08-05 19:59 ./usr/include/libmaus2/gtf/ExonInterval.hpp -rw-r--r-- root/root 1655 2026-08-05 19:59 ./usr/include/libmaus2/gtf/ExonSubInfo.hpp -rw-r--r-- root/root 52296 2026-08-05 19:59 ./usr/include/libmaus2/gtf/GTFData.hpp -rw-r--r-- root/root 3791 2026-08-05 19:59 ./usr/include/libmaus2/gtf/Gene.hpp -rw-r--r-- root/root 1235 2026-08-05 19:59 ./usr/include/libmaus2/gtf/GeneChrComparator.hpp -rw-r--r-- root/root 2535 2026-08-05 19:59 ./usr/include/libmaus2/gtf/GeneRangeSets.hpp -rw-r--r-- root/root 9416 2026-08-05 19:59 ./usr/include/libmaus2/gtf/IntervalList.hpp -rw-r--r-- root/root 4131 2026-08-05 19:59 ./usr/include/libmaus2/gtf/IntervalListSet.hpp -rw-r--r-- root/root 6014 2026-08-05 19:59 ./usr/include/libmaus2/gtf/RangeSets.hpp -rw-r--r-- root/root 1827 2026-08-05 19:59 ./usr/include/libmaus2/gtf/Tag.hpp -rw-r--r-- root/root 3540 2026-08-05 19:59 ./usr/include/libmaus2/gtf/Transcript.hpp -rw-r--r-- root/root 3896 2026-08-05 19:59 ./usr/include/libmaus2/gtf/TranscriptRangeSets.hpp drwxr-xr-x root/root 0 2026-08-05 19:59 ./usr/include/libmaus2/hashing/ -rw-r--r-- root/root 8639 2026-08-05 19:59 ./usr/include/libmaus2/hashing/CircularHash.hpp -rw-r--r-- root/root 4198 2026-08-05 19:59 ./usr/include/libmaus2/hashing/ConstantStringHash.hpp -rw-r--r-- root/root 3229 2026-08-05 19:59 ./usr/include/libmaus2/hashing/Crc32.hpp -rw-r--r-- root/root 1158 2026-08-05 19:59 ./usr/include/libmaus2/hashing/MurmurHash3.h -rw-r--r-- root/root 16023 2026-08-05 19:59 ./usr/include/libmaus2/hashing/hash.hpp drwxr-xr-x root/root 0 2026-08-05 19:59 ./usr/include/libmaus2/huffman/ -rw-r--r-- root/root 6093 2026-08-05 19:59 ./usr/include/libmaus2/huffman/BitInputBuffer.hpp -rw-r--r-- root/root 20622 2026-08-05 19:59 ./usr/include/libmaus2/huffman/CanonicalEncoder.hpp -rw-r--r-- root/root 4994 2026-08-05 19:59 ./usr/include/libmaus2/huffman/CompressTable.hpp -rw-r--r-- root/root 6724 2026-08-05 19:59 ./usr/include/libmaus2/huffman/DecodeTable.hpp -rw-r--r-- root/root 10589 2026-08-05 19:59 ./usr/include/libmaus2/huffman/EncodeTable.hpp -rw-r--r-- root/root 1631 2026-08-05 19:59 ./usr/include/libmaus2/huffman/FileStreamBaseType.hpp -rw-r--r-- root/root 10881 2026-08-05 19:59 ./usr/include/libmaus2/huffman/GapDecoder.hpp -rw-r--r-- root/root 6725 2026-08-05 19:59 ./usr/include/libmaus2/huffman/GapDecoderIndexBase.hpp -rw-r--r-- root/root 10041 2026-08-05 19:59 ./usr/include/libmaus2/huffman/GapEncoder.hpp -rw-r--r-- root/root 3816 2026-08-05 19:59 ./usr/include/libmaus2/huffman/HuffmanBase.hpp -rw-r--r-- root/root 2757 2026-08-05 19:59 ./usr/include/libmaus2/huffman/HuffmanEncoderFile.hpp -rw-r--r-- root/root 1808 2026-08-05 19:59 ./usr/include/libmaus2/huffman/HuffmanInputFile.hpp -rw-r--r-- root/root 37047 2026-08-05 19:59 ./usr/include/libmaus2/huffman/HuffmanSorting.hpp -rw-r--r-- root/root 26650 2026-08-05 19:59 ./usr/include/libmaus2/huffman/HuffmanTree.hpp -rw-r--r-- root/root 18560 2026-08-05 19:59 ./usr/include/libmaus2/huffman/HuffmanTreeInnerNode.hpp -rw-r--r-- root/root 4951 2026-08-05 19:59 ./usr/include/libmaus2/huffman/HuffmanTreeLeaf.hpp -rw-r--r-- root/root 1221 2026-08-05 19:59 ./usr/include/libmaus2/huffman/HuffmanTreeLeafComparator.hpp -rw-r--r-- root/root 6038 2026-08-05 19:59 ./usr/include/libmaus2/huffman/HuffmanTreeNode.hpp -rw-r--r-- root/root 18912 2026-08-05 19:59 ./usr/include/libmaus2/huffman/IndexDecoderDataArray.hpp -rw-r--r-- root/root 2165 2026-08-05 19:59 ./usr/include/libmaus2/huffman/IndexEntry.hpp -rw-r--r-- root/root 12357 2026-08-05 19:59 ./usr/include/libmaus2/huffman/IndexLoader.hpp -rw-r--r-- root/root 1263 2026-08-05 19:59 ./usr/include/libmaus2/huffman/IndexLoaderBase.hpp -rw-r--r-- root/root 2814 2026-08-05 19:59 ./usr/include/libmaus2/huffman/IndexWriter.hpp -rw-r--r-- root/root 2154 2026-08-05 19:59 ./usr/include/libmaus2/huffman/InputAdapter.hpp -rw-r--r-- root/root 1175 2026-08-05 19:59 ./usr/include/libmaus2/huffman/KvInitResult.hpp -rw-r--r-- root/root 1819 2026-08-05 19:59 ./usr/include/libmaus2/huffman/LFInfo.hpp -rw-r--r-- root/root 1286 2026-08-05 19:59 ./usr/include/libmaus2/huffman/LFPhiPair.hpp -rw-r--r-- root/root 5743 2026-08-05 19:59 ./usr/include/libmaus2/huffman/LFPhiPairDecoder.hpp -rw-r--r-- root/root 5369 2026-08-05 19:59 ./usr/include/libmaus2/huffman/LFPhiPairEncoder.hpp -rw-r--r-- root/root 1228 2026-08-05 19:59 ./usr/include/libmaus2/huffman/LFPhiPairLCP.hpp -rw-r--r-- root/root 7616 2026-08-05 19:59 ./usr/include/libmaus2/huffman/LFPhiPairLCPDecoder.hpp -rw-r--r-- root/root 5292 2026-08-05 19:59 ./usr/include/libmaus2/huffman/LFPhiPairLCPEncoder.hpp -rw-r--r-- root/root 1131 2026-08-05 19:59 ./usr/include/libmaus2/huffman/LFRankLCP.hpp -rw-r--r-- root/root 7434 2026-08-05 19:59 ./usr/include/libmaus2/huffman/LFRankLCPDecoder.hpp -rw-r--r-- root/root 5113 2026-08-05 19:59 ./usr/include/libmaus2/huffman/LFRankLCPEncoder.hpp -rw-r--r-- root/root 1826 2026-08-05 19:59 ./usr/include/libmaus2/huffman/LFRankPos.hpp -rw-r--r-- root/root 17732 2026-08-05 19:59 ./usr/include/libmaus2/huffman/LFRankPosDecoder.hpp -rw-r--r-- root/root 14248 2026-08-05 19:59 ./usr/include/libmaus2/huffman/LFRankPosEncoder.hpp -rw-r--r-- root/root 1137 2026-08-05 19:59 ./usr/include/libmaus2/huffman/LFSetBit.hpp -rw-r--r-- root/root 7221 2026-08-05 19:59 ./usr/include/libmaus2/huffman/LFSetBitDecoder.hpp -rw-r--r-- root/root 7280 2026-08-05 19:59 ./usr/include/libmaus2/huffman/LFSetBitEncoder.hpp -rw-r--r-- root/root 3709 2026-08-05 19:59 ./usr/include/libmaus2/huffman/LFSupportBitDecoder.hpp -rw-r--r-- root/root 8133 2026-08-05 19:59 ./usr/include/libmaus2/huffman/LFSupportDecoder.hpp -rw-r--r-- root/root 13198 2026-08-05 19:59 ./usr/include/libmaus2/huffman/LFSupportEncoder.hpp -rw-r--r-- root/root 1959 2026-08-05 19:59 ./usr/include/libmaus2/huffman/LFSymRankPos.hpp -rw-r--r-- root/root 8779 2026-08-05 19:59 ./usr/include/libmaus2/huffman/LFSymRankPosDecoder.hpp -rw-r--r-- root/root 13832 2026-08-05 19:59 ./usr/include/libmaus2/huffman/LFSymRankPosEncoder.hpp -rw-r--r-- root/root 1213 2026-08-05 19:59 ./usr/include/libmaus2/huffman/LFValue.hpp -rw-r--r-- root/root 7561 2026-08-05 19:59 ./usr/include/libmaus2/huffman/LFValueDecoder.hpp -rw-r--r-- root/root 7927 2026-08-05 19:59 ./usr/include/libmaus2/huffman/LFValueEncoder.hpp -rw-r--r-- root/root 1273 2026-08-05 19:59 ./usr/include/libmaus2/huffman/OutputAdapter.hpp -rw-r--r-- root/root 1063 2026-08-05 19:59 ./usr/include/libmaus2/huffman/PairAddSecond.hpp -rw-r--r-- root/root 26341 2026-08-05 19:59 ./usr/include/libmaus2/huffman/RLDecoder.hpp -rw-r--r-- root/root 4587 2026-08-05 19:59 ./usr/include/libmaus2/huffman/RLDecoderIndexBase.hpp -rw-r--r-- root/root 10531 2026-08-05 19:59 ./usr/include/libmaus2/huffman/RLEncoder.hpp -rw-r--r-- root/root 933 2026-08-05 19:59 ./usr/include/libmaus2/huffman/RLInitType.hpp -rw-r--r-- root/root 1048 2026-08-05 19:59 ./usr/include/libmaus2/huffman/RLRun.hpp -rw-r--r-- root/root 1278 2026-08-05 19:59 ./usr/include/libmaus2/huffman/SymBit.hpp -rw-r--r-- root/root 10651 2026-08-05 19:59 ./usr/include/libmaus2/huffman/SymBitDecoder.hpp -rw-r--r-- root/root 7887 2026-08-05 19:59 ./usr/include/libmaus2/huffman/SymBitEncoder.hpp -rw-r--r-- root/root 1456 2026-08-05 19:59 ./usr/include/libmaus2/huffman/SymBitRun.hpp -rw-r--r-- root/root 1363 2026-08-05 19:59 ./usr/include/libmaus2/huffman/SymCount.hpp -rw-r--r-- root/root 11143 2026-08-05 19:59 ./usr/include/libmaus2/huffman/SymCountDecoder.hpp -rw-r--r-- root/root 9669 2026-08-05 19:59 ./usr/include/libmaus2/huffman/SymCountEncoder.hpp -rw-r--r-- root/root 1518 2026-08-05 19:59 ./usr/include/libmaus2/huffman/SymCountRun.hpp -rw-r--r-- root/root 1685 2026-08-05 19:59 ./usr/include/libmaus2/huffman/hufEncodeString.hpp -rw-r--r-- root/root 6149 2026-08-05 19:59 ./usr/include/libmaus2/huffman/huffman.hpp drwxr-xr-x root/root 0 2026-08-05 19:59 ./usr/include/libmaus2/index/ -rw-r--r-- root/root 12918 2026-08-05 19:59 ./usr/include/libmaus2/index/ExternalMemoryIndexDecoder.hpp -rw-r--r-- root/root 2040 2026-08-05 19:59 ./usr/include/libmaus2/index/ExternalMemoryIndexDecoderFindLargestSmallerResult.hpp -rw-r--r-- root/root 8552 2026-08-05 19:59 ./usr/include/libmaus2/index/ExternalMemoryIndexGenerator.hpp -rw-r--r-- root/root 2064 2026-08-05 19:59 ./usr/include/libmaus2/index/ExternalMemoryIndexRecord.hpp drwxr-xr-x root/root 0 2026-08-05 19:59 ./usr/include/libmaus2/lcp/ -rw-r--r-- root/root 1961 2026-08-05 19:59 ./usr/include/libmaus2/lcp/ComputeSuccinctLCPResult.hpp -rw-r--r-- root/root 3883 2026-08-05 19:59 ./usr/include/libmaus2/lcp/LCP.hpp -rw-r--r-- root/root 3096 2026-08-05 19:59 ./usr/include/libmaus2/lcp/PLCPBitDecoder.hpp -rw-r--r-- root/root 17717 2026-08-05 19:59 ./usr/include/libmaus2/lcp/SuccinctLCP.hpp -rw-r--r-- root/root 6312 2026-08-05 19:59 ./usr/include/libmaus2/lcp/WaveletLCP.hpp -rw-r--r-- root/root 5295 2026-08-05 19:59 ./usr/include/libmaus2/lcp/WaveletLCPResult.hpp drwxr-xr-x root/root 0 2026-08-05 19:59 ./usr/include/libmaus2/lcs/ -rw-r--r-- root/root 1395 2026-08-05 19:59 ./usr/include/libmaus2/lcs/Aligner.hpp -rw-r--r-- root/root 1441 2026-08-05 19:59 ./usr/include/libmaus2/lcs/AlignerFactory.hpp -rw-r--r-- root/root 1611 2026-08-05 19:59 ./usr/include/libmaus2/lcs/AlignmentOneAgainstManyAVX2.hpp -rw-r--r-- root/root 1675 2026-08-05 19:59 ./usr/include/libmaus2/lcs/AlignmentOneAgainstManyFactory.hpp -rw-r--r-- root/root 1512 2026-08-05 19:59 ./usr/include/libmaus2/lcs/AlignmentOneAgainstManyGeneric.hpp -rw-r--r-- root/root 1398 2026-08-05 19:59 ./usr/include/libmaus2/lcs/AlignmentOneAgainstManyInterface.hpp -rw-r--r-- root/root 17661 2026-08-05 19:59 ./usr/include/libmaus2/lcs/AlignmentPrint.hpp -rw-r--r-- root/root 3631 2026-08-05 19:59 ./usr/include/libmaus2/lcs/AlignmentStatistics.hpp -rw-r--r-- root/root 62319 2026-08-05 19:59 ./usr/include/libmaus2/lcs/AlignmentTraceContainer.hpp -rw-r--r-- root/root 1327 2026-08-05 19:59 ./usr/include/libmaus2/lcs/BandedAligner.hpp -rw-r--r-- root/root 1477 2026-08-05 19:59 ./usr/include/libmaus2/lcs/BandedAlignerFactory.hpp -rw-r--r-- root/root 15824 2026-08-05 19:59 ./usr/include/libmaus2/lcs/BandedEditDistance.hpp -rw-r--r-- root/root 18650 2026-08-05 19:59 ./usr/include/libmaus2/lcs/BandedLocalEditDistance.hpp -rw-r--r-- root/root 1552 2026-08-05 19:59 ./usr/include/libmaus2/lcs/BaseConstants.hpp -rw-r--r-- root/root 3190 2026-08-05 19:59 ./usr/include/libmaus2/lcs/BitVector.hpp -rw-r--r-- root/root 1060 2026-08-05 19:59 ./usr/include/libmaus2/lcs/BitVectorResultCallbackInterface.hpp -rw-r--r-- root/root 3596 2026-08-05 19:59 ./usr/include/libmaus2/lcs/Chain.hpp -rw-r--r-- root/root 1418 2026-08-05 19:59 ./usr/include/libmaus2/lcs/ChainAddQueueElement.hpp -rw-r--r-- root/root 1124 2026-08-05 19:59 ./usr/include/libmaus2/lcs/ChainAddQueueElementHeapComparator.hpp -rw-r--r-- root/root 3372 2026-08-05 19:59 ./usr/include/libmaus2/lcs/ChainAlignment.hpp -rw-r--r-- root/root 1527 2026-08-05 19:59 ./usr/include/libmaus2/lcs/ChainLeftMostComparator.hpp -rw-r--r-- root/root 1829 2026-08-05 19:59 ./usr/include/libmaus2/lcs/ChainNode.hpp -rw-r--r-- root/root 1896 2026-08-05 19:59 ./usr/include/libmaus2/lcs/ChainNodeInfo.hpp -rw-r--r-- root/root 24225 2026-08-05 19:59 ./usr/include/libmaus2/lcs/ChainNodeInfoSet.hpp -rw-r--r-- root/root 1399 2026-08-05 19:59 ./usr/include/libmaus2/lcs/ChainRemoveQueueElement.hpp -rw-r--r-- root/root 1358 2026-08-05 19:59 ./usr/include/libmaus2/lcs/ChainRemoveQueueElementComparator.hpp -rw-r--r-- root/root 1384 2026-08-05 19:59 ./usr/include/libmaus2/lcs/ChainSplayTreeNode.hpp -rw-r--r-- root/root 1357 2026-08-05 19:59 ./usr/include/libmaus2/lcs/ChainSplayTreeNodeComparator.hpp -rw-r--r-- root/root 1232 2026-08-05 19:59 ./usr/include/libmaus2/lcs/CheckSelf.hpp -rw-r--r-- root/root 1284 2026-08-05 19:59 ./usr/include/libmaus2/lcs/DistNodeType.hpp -rw-r--r-- root/root 6824 2026-08-05 19:59 ./usr/include/libmaus2/lcs/EditDistance.hpp -rw-r--r-- root/root 1004 2026-08-05 19:59 ./usr/include/libmaus2/lcs/EditDistancePriorityType.hpp -rw-r--r-- root/root 1669 2026-08-05 19:59 ./usr/include/libmaus2/lcs/EditDistanceResult.hpp -rw-r--r-- root/root 2740 2026-08-05 19:59 ./usr/include/libmaus2/lcs/EditDistanceTraceContainer.hpp -rw-r--r-- root/root 5081 2026-08-05 19:59 ./usr/include/libmaus2/lcs/GenericAlignmentPrint.hpp -rw-r--r-- root/root 18469 2026-08-05 19:59 ./usr/include/libmaus2/lcs/GenericEditDistance.hpp -rw-r--r-- root/root 19788 2026-08-05 19:59 ./usr/include/libmaus2/lcs/LCS.hpp -rw-r--r-- root/root 2080 2026-08-05 19:59 ./usr/include/libmaus2/lcs/LCSDynamic.hpp -rw-r--r-- root/root 1408 2026-08-05 19:59 ./usr/include/libmaus2/lcs/LCSRef.hpp -rw-r--r-- root/root 8107 2026-08-05 19:59 ./usr/include/libmaus2/lcs/LocalAlignmentPrint.hpp -rw-r--r-- root/root 3445 2026-08-05 19:59 ./usr/include/libmaus2/lcs/LocalAlignmentTraceContainer.hpp -rw-r--r-- root/root 1180 2026-08-05 19:59 ./usr/include/libmaus2/lcs/LocalBaseConstants.hpp -rw-r--r-- root/root 7584 2026-08-05 19:59 ./usr/include/libmaus2/lcs/LocalEditDistance.hpp -rw-r--r-- root/root 2220 2026-08-05 19:59 ./usr/include/libmaus2/lcs/LocalEditDistanceResult.hpp -rw-r--r-- root/root 2113 2026-08-05 19:59 ./usr/include/libmaus2/lcs/LocalEditDistanceTraceContainer.hpp -rw-r--r-- root/root 1311 2026-08-05 19:59 ./usr/include/libmaus2/lcs/LocalPenaltyConstants.hpp -rw-r--r-- root/root 2487 2026-08-05 19:59 ./usr/include/libmaus2/lcs/MetaEditDistance.hpp -rw-r--r-- root/root 2547 2026-08-05 19:59 ./usr/include/libmaus2/lcs/MetaLocalEditDistance.hpp -rw-r--r-- root/root 23321 2026-08-05 19:59 ./usr/include/libmaus2/lcs/NNP.hpp -rw-r--r-- root/root 6247 2026-08-05 19:59 ./usr/include/libmaus2/lcs/NNPAlignResult.hpp -rw-r--r-- root/root 68312 2026-08-05 19:59 ./usr/include/libmaus2/lcs/NNPCor.hpp -rw-r--r-- root/root 6585 2026-08-05 19:59 ./usr/include/libmaus2/lcs/NNPCorL.hpp -rw-r--r-- root/root 35514 2026-08-05 19:59 ./usr/include/libmaus2/lcs/NNPCorLocalAligner.hpp -rw-r--r-- root/root 34888 2026-08-05 19:59 ./usr/include/libmaus2/lcs/NNPLocalAligner.hpp -rw-r--r-- root/root 39405 2026-08-05 19:59 ./usr/include/libmaus2/lcs/NNPTraceContainer.hpp -rw-r--r-- root/root 1484 2026-08-05 19:59 ./usr/include/libmaus2/lcs/NNPTraceElement.hpp -rw-r--r-- root/root 26032 2026-08-05 19:59 ./usr/include/libmaus2/lcs/NP.hpp -rw-r--r-- root/root 15479 2026-08-05 19:59 ./usr/include/libmaus2/lcs/NPL.hpp -rw-r--r-- root/root 4202 2026-08-05 19:59 ./usr/include/libmaus2/lcs/NPLLinMem.hpp -rw-r--r-- root/root 10114 2026-08-05 19:59 ./usr/include/libmaus2/lcs/NPLNoTrace.hpp -rw-r--r-- root/root 17615 2026-08-05 19:59 ./usr/include/libmaus2/lcs/NPLSelf.hpp -rw-r--r-- root/root 4200 2026-08-05 19:59 ./usr/include/libmaus2/lcs/NPLinMem.hpp -rw-r--r-- root/root 20136 2026-08-05 19:59 ./usr/include/libmaus2/lcs/NPNoTrace.hpp -rw-r--r-- root/root 5337 2026-08-05 19:59 ./usr/include/libmaus2/lcs/OverlapOrientation.hpp -rw-r--r-- root/root 1281 2026-08-05 19:59 ./usr/include/libmaus2/lcs/PenaltyConstants.hpp -rw-r--r-- root/root 4700 2026-08-05 19:59 ./usr/include/libmaus2/lcs/PosMapping.hpp -rw-r--r-- root/root 22226 2026-08-05 19:59 ./usr/include/libmaus2/lcs/SMEMProcessor.hpp -rw-r--r-- root/root 1376 2026-08-05 19:59 ./usr/include/libmaus2/lcs/ScoreBandedAligner.hpp -rw-r--r-- root/root 2654 2026-08-05 19:59 ./usr/include/libmaus2/lcs/SimdX86BandedGlobalAlignmentScoreTemplate.hpp -rw-r--r-- root/root 1177 2026-08-05 19:59 ./usr/include/libmaus2/lcs/SimdX86BandedGlobalAlignmentScoreY256_16.hpp -rw-r--r-- root/root 4837 2026-08-05 19:59 ./usr/include/libmaus2/lcs/SimdX86BandedGlobalAlignmentScoreY256_16_def.hpp -rw-r--r-- root/root 1793 2026-08-05 19:59 ./usr/include/libmaus2/lcs/SimdX86BandedGlobalAlignmentScoreY256_16_undef.hpp -rw-r--r-- root/root 2312 2026-08-05 19:59 ./usr/include/libmaus2/lcs/SimdX86BandedGlobalAlignmentTemplate.hpp -rw-r--r-- root/root 1152 2026-08-05 19:59 ./usr/include/libmaus2/lcs/SimdX86BandedGlobalAlignmentX128_16.hpp -rw-r--r-- root/root 3529 2026-08-05 19:59 ./usr/include/libmaus2/lcs/SimdX86BandedGlobalAlignmentX128_16_def.hpp -rw-r--r-- root/root 1724 2026-08-05 19:59 ./usr/include/libmaus2/lcs/SimdX86BandedGlobalAlignmentX128_16_undef.hpp -rw-r--r-- root/root 1147 2026-08-05 19:59 ./usr/include/libmaus2/lcs/SimdX86BandedGlobalAlignmentX128_8.hpp -rw-r--r-- root/root 3679 2026-08-05 19:59 ./usr/include/libmaus2/lcs/SimdX86BandedGlobalAlignmentX128_8_def.hpp -rw-r--r-- root/root 1728 2026-08-05 19:59 ./usr/include/libmaus2/lcs/SimdX86BandedGlobalAlignmentX128_8_undef.hpp -rw-r--r-- root/root 1152 2026-08-05 19:59 ./usr/include/libmaus2/lcs/SimdX86BandedGlobalAlignmentY256_16.hpp -rw-r--r-- root/root 4721 2026-08-05 19:59 ./usr/include/libmaus2/lcs/SimdX86BandedGlobalAlignmentY256_16_def.hpp -rw-r--r-- root/root 1681 2026-08-05 19:59 ./usr/include/libmaus2/lcs/SimdX86BandedGlobalAlignmentY256_16_undef.hpp -rw-r--r-- root/root 1147 2026-08-05 19:59 ./usr/include/libmaus2/lcs/SimdX86BandedGlobalAlignmentY256_8.hpp -rw-r--r-- root/root 4703 2026-08-05 19:59 ./usr/include/libmaus2/lcs/SimdX86BandedGlobalAlignmentY256_8_def.hpp -rw-r--r-- root/root 970 2026-08-05 19:59 ./usr/include/libmaus2/lcs/SimdX86BandedGlobalAlignmentY256_8_undef.hpp -rw-r--r-- root/root 4194 2026-08-05 19:59 ./usr/include/libmaus2/lcs/SimdX86GlobalAlignmentConstants128.hpp -rw-r--r-- root/root 5790 2026-08-05 19:59 ./usr/include/libmaus2/lcs/SimdX86GlobalAlignmentConstants256.hpp -rw-r--r-- root/root 6600 2026-08-05 19:59 ./usr/include/libmaus2/lcs/SimdX86GlobalAlignmentScoreConstants256.hpp -rw-r--r-- root/root 2115 2026-08-05 19:59 ./usr/include/libmaus2/lcs/SimdX86GlobalAlignmentTemplate.hpp -rw-r--r-- root/root 1120 2026-08-05 19:59 ./usr/include/libmaus2/lcs/SimdX86GlobalAlignmentX128_16.hpp -rw-r--r-- root/root 2256 2026-08-05 19:59 ./usr/include/libmaus2/lcs/SimdX86GlobalAlignmentX128_16_def.hpp -rw-r--r-- root/root 1313 2026-08-05 19:59 ./usr/include/libmaus2/lcs/SimdX86GlobalAlignmentX128_16_undef.hpp -rw-r--r-- root/root 1115 2026-08-05 19:59 ./usr/include/libmaus2/lcs/SimdX86GlobalAlignmentX128_8.hpp -rw-r--r-- root/root 2247 2026-08-05 19:59 ./usr/include/libmaus2/lcs/SimdX86GlobalAlignmentX128_8_def.hpp -rw-r--r-- root/root 1313 2026-08-05 19:59 ./usr/include/libmaus2/lcs/SimdX86GlobalAlignmentX128_8_undef.hpp -rw-r--r-- root/root 1120 2026-08-05 19:59 ./usr/include/libmaus2/lcs/SimdX86GlobalAlignmentY256_16.hpp -rw-r--r-- root/root 2593 2026-08-05 19:59 ./usr/include/libmaus2/lcs/SimdX86GlobalAlignmentY256_16_def.hpp -rw-r--r-- root/root 1247 2026-08-05 19:59 ./usr/include/libmaus2/lcs/SimdX86GlobalAlignmentY256_16_undef.hpp -rw-r--r-- root/root 1115 2026-08-05 19:59 ./usr/include/libmaus2/lcs/SimdX86GlobalAlignmentY256_8.hpp -rw-r--r-- root/root 2582 2026-08-05 19:59 ./usr/include/libmaus2/lcs/SimdX86GlobalAlignmentY256_8_def.hpp -rw-r--r-- root/root 1247 2026-08-05 19:59 ./usr/include/libmaus2/lcs/SimdX86GlobalAlignmentY256_8_undef.hpp -rw-r--r-- root/root 7757 2026-08-05 19:59 ./usr/include/libmaus2/lcs/SuffixArrayLCS.hpp -rw-r--r-- root/root 10793 2026-08-05 19:59 ./usr/include/libmaus2/lcs/SuffixPrefix.hpp -rw-r--r-- root/root 5444 2026-08-05 19:59 ./usr/include/libmaus2/lcs/SuffixPrefixAlignmentPrint.hpp -rw-r--r-- root/root 3857 2026-08-05 19:59 ./usr/include/libmaus2/lcs/SuffixPrefixResult.hpp -rw-r--r-- root/root 6053 2026-08-05 19:59 ./usr/include/libmaus2/lcs/TraceContainer.hpp -rw-r--r-- root/root 6678 2026-08-05 19:59 ./usr/include/libmaus2/lcs/TwoSidedNPL.hpp drwxr-xr-x root/root 0 2026-08-05 19:59 ./usr/include/libmaus2/lf/ -rw-r--r-- root/root 3193 2026-08-05 19:59 ./usr/include/libmaus2/lf/DArray.hpp -rw-r--r-- root/root 6805 2026-08-05 19:59 ./usr/include/libmaus2/lf/HuffmanLF.hpp -rw-r--r-- root/root 5728 2026-08-05 19:59 ./usr/include/libmaus2/lf/ImpCacheLineRankLF.hpp -rw-r--r-- root/root 3796 2026-08-05 19:59 ./usr/include/libmaus2/lf/ImpCacheLineRankLFNonZero.hpp -rw-r--r-- root/root 6726 2026-08-05 19:59 ./usr/include/libmaus2/lf/ImpCompactHuffmanWaveletLF.hpp -rw-r--r-- root/root 5715 2026-08-05 19:59 ./usr/include/libmaus2/lf/ImpHuffmanWaveletLF.hpp -rw-r--r-- root/root 5850 2026-08-05 19:59 ./usr/include/libmaus2/lf/ImpWTLF.hpp -rw-r--r-- root/root 2735 2026-08-05 19:59 ./usr/include/libmaus2/lf/LF.hpp -rw-r--r-- root/root 5996 2026-08-05 19:59 ./usr/include/libmaus2/lf/LFBase.hpp -rw-r--r-- root/root 9756 2026-08-05 19:59 ./usr/include/libmaus2/lf/LFZero.hpp -rw-r--r-- root/root 3835 2026-08-05 19:59 ./usr/include/libmaus2/lf/MultiRankCacheLF.hpp -rw-r--r-- root/root 9765 2026-08-05 19:59 ./usr/include/libmaus2/lf/MultiRankLF.hpp -rw-r--r-- root/root 1864 2026-08-05 19:59 ./usr/include/libmaus2/lf/QuickLF.hpp -rw-r--r-- root/root 5654 2026-08-05 19:59 ./usr/include/libmaus2/lf/RLIndexLF.hpp drwxr-xr-x root/root 0 2026-08-05 19:59 ./usr/include/libmaus2/lru/ -rw-r--r-- root/root 2841 2026-08-05 19:59 ./usr/include/libmaus2/lru/FileBunchLRU.hpp -rw-r--r-- root/root 2221 2026-08-05 19:59 ./usr/include/libmaus2/lru/LRU.hpp -rw-r--r-- root/root 3247 2026-08-05 19:59 ./usr/include/libmaus2/lru/SparseLRU.hpp -rw-r--r-- root/root 3288 2026-08-05 19:59 ./usr/include/libmaus2/lru/SparseLRUFileBunch.hpp drwxr-xr-x root/root 0 2026-08-05 19:59 ./usr/include/libmaus2/lz/ -rw-r--r-- root/root 1427 2026-08-05 19:59 ./usr/include/libmaus2/lz/BgzfChunkInputStream.hpp -rw-r--r-- root/root 3177 2026-08-05 19:59 ./usr/include/libmaus2/lz/BgzfChunkInputStreamBuffer.hpp -rw-r--r-- root/root 1235 2026-08-05 19:59 ./usr/include/libmaus2/lz/BgzfConstants.hpp -rw-r--r-- root/root 7007 2026-08-05 19:59 ./usr/include/libmaus2/lz/BgzfDeflate.hpp -rw-r--r-- root/root 3907 2026-08-05 19:59 ./usr/include/libmaus2/lz/BgzfDeflateBase.hpp -rw-r--r-- root/root 1637 2026-08-05 19:59 ./usr/include/libmaus2/lz/BgzfDeflateBlockIdComparator.hpp -rw-r--r-- root/root 1508 2026-08-05 19:59 ./usr/include/libmaus2/lz/BgzfDeflateBlockIdInfo.hpp -rw-r--r-- root/root 2041 2026-08-05 19:59 ./usr/include/libmaus2/lz/BgzfDeflateHeaderFunctions.hpp -rw-r--r-- root/root 1478 2026-08-05 19:59 ./usr/include/libmaus2/lz/BgzfDeflateInputBufferBase.hpp -rw-r--r-- root/root 1519 2026-08-05 19:59 ./usr/include/libmaus2/lz/BgzfDeflateOutputBufferBase.hpp -rw-r--r-- root/root 1388 2026-08-05 19:59 ./usr/include/libmaus2/lz/BgzfDeflateOutputBufferBaseAllocator.hpp -rw-r--r-- root/root 1372 2026-08-05 19:59 ./usr/include/libmaus2/lz/BgzfDeflateOutputBufferBaseTypeInfo.hpp -rw-r--r-- root/root 1367 2026-08-05 19:59 ./usr/include/libmaus2/lz/BgzfDeflateOutputCallback.hpp -rw-r--r-- root/root 2353 2026-08-05 19:59 ./usr/include/libmaus2/lz/BgzfDeflateOutputCallbackMD5.hpp -rw-r--r-- root/root 9772 2026-08-05 19:59 ./usr/include/libmaus2/lz/BgzfDeflateParallel.hpp -rw-r--r-- root/root 5823 2026-08-05 19:59 ./usr/include/libmaus2/lz/BgzfDeflateParallelContext.hpp -rw-r--r-- root/root 9191 2026-08-05 19:59 ./usr/include/libmaus2/lz/BgzfDeflateParallelThread.hpp -rw-r--r-- root/root 2642 2026-08-05 19:59 ./usr/include/libmaus2/lz/BgzfDeflateZStreamBase.hpp -rw-r--r-- root/root 1389 2026-08-05 19:59 ./usr/include/libmaus2/lz/BgzfDeflateZStreamBaseAllocator.hpp -rw-r--r-- root/root 3110 2026-08-05 19:59 ./usr/include/libmaus2/lz/BgzfDeflateZStreamBaseFlushInfo.hpp -rw-r--r-- root/root 1342 2026-08-05 19:59 ./usr/include/libmaus2/lz/BgzfDeflateZStreamBaseTypeInfo.hpp -rw-r--r-- root/root 6498 2026-08-05 19:59 ./usr/include/libmaus2/lz/BgzfInflate.hpp -rw-r--r-- root/root 6386 2026-08-05 19:59 ./usr/include/libmaus2/lz/BgzfInflateBase.hpp -rw-r--r-- root/root 1174 2026-08-05 19:59 ./usr/include/libmaus2/lz/BgzfInflateBaseAllocator.hpp -rw-r--r-- root/root 1257 2026-08-05 19:59 ./usr/include/libmaus2/lz/BgzfInflateBaseTypeInfo.hpp -rw-r--r-- root/root 5676 2026-08-05 19:59 ./usr/include/libmaus2/lz/BgzfInflateBlock.hpp -rw-r--r-- root/root 1649 2026-08-05 19:59 ./usr/include/libmaus2/lz/BgzfInflateBlockIdComparator.hpp -rw-r--r-- root/root 1520 2026-08-05 19:59 ./usr/include/libmaus2/lz/BgzfInflateBlockIdInfo.hpp -rw-r--r-- root/root 3482 2026-08-05 19:59 ./usr/include/libmaus2/lz/BgzfInflateDecompressPackageDispatcher.hpp -rw-r--r-- root/root 11595 2026-08-05 19:59 ./usr/include/libmaus2/lz/BgzfInflateDeflateParallel.hpp -rw-r--r-- root/root 1914 2026-08-05 19:59 ./usr/include/libmaus2/lz/BgzfInflateDeflateParallelInputStream.hpp -rw-r--r-- root/root 11632 2026-08-05 19:59 ./usr/include/libmaus2/lz/BgzfInflateDeflateParallelThread.hpp -rw-r--r-- root/root 1335 2026-08-05 19:59 ./usr/include/libmaus2/lz/BgzfInflateDeflateParallelWrapper.hpp -rw-r--r-- root/root 2206 2026-08-05 19:59 ./usr/include/libmaus2/lz/BgzfInflateFile.hpp -rw-r--r-- root/root 3949 2026-08-05 19:59 ./usr/include/libmaus2/lz/BgzfInflateHeaderBase.hpp -rw-r--r-- root/root 2071 2026-08-05 19:59 ./usr/include/libmaus2/lz/BgzfInflateInfo.hpp -rw-r--r-- root/root 6024 2026-08-05 19:59 ./usr/include/libmaus2/lz/BgzfInflateParallel.hpp -rw-r--r-- root/root 3711 2026-08-05 19:59 ./usr/include/libmaus2/lz/BgzfInflateParallelContext.hpp -rw-r--r-- root/root 3442 2026-08-05 19:59 ./usr/include/libmaus2/lz/BgzfInflateParallelStream.hpp -rw-r--r-- root/root 5542 2026-08-05 19:59 ./usr/include/libmaus2/lz/BgzfInflateParallelThread.hpp -rw-r--r-- root/root 1768 2026-08-05 19:59 ./usr/include/libmaus2/lz/BgzfInflateParallelWrapper.hpp -rw-r--r-- root/root 7193 2026-08-05 19:59 ./usr/include/libmaus2/lz/BgzfInflateReadPackageDispatcher.hpp -rw-r--r-- root/root 2281 2026-08-05 19:59 ./usr/include/libmaus2/lz/BgzfInflateStream.hpp -rw-r--r-- root/root 4120 2026-08-05 19:59 ./usr/include/libmaus2/lz/BgzfInflateThreadPoolReader.hpp -rw-r--r-- root/root 1332 2026-08-05 19:59 ./usr/include/libmaus2/lz/BgzfInflateWrapper.hpp -rw-r--r-- root/root 3103 2026-08-05 19:59 ./usr/include/libmaus2/lz/BgzfInflateZStreamBase.hpp -rw-r--r-- root/root 1241 2026-08-05 19:59 ./usr/include/libmaus2/lz/BgzfInflateZStreamBaseAllocator.hpp -rw-r--r-- root/root 1342 2026-08-05 19:59 ./usr/include/libmaus2/lz/BgzfInflateZStreamBaseTypeInfo.hpp -rw-r--r-- root/root 6760 2026-08-05 19:59 ./usr/include/libmaus2/lz/BgzfInputContext.hpp -rw-r--r-- root/root 1344 2026-08-05 19:59 ./usr/include/libmaus2/lz/BgzfParallelRecodeDeflateBase.hpp -rw-r--r-- root/root 4096 2026-08-05 19:59 ./usr/include/libmaus2/lz/BgzfRecode.hpp -rw-r--r-- root/root 2124 2026-08-05 19:59 ./usr/include/libmaus2/lz/BgzfRecodeParallel.hpp -rw-r--r-- root/root 3459 2026-08-05 19:59 ./usr/include/libmaus2/lz/BgzfStreamWrapper.hpp -rw-r--r-- root/root 3235 2026-08-05 19:59 ./usr/include/libmaus2/lz/BgzfThreadOpBase.hpp -rw-r--r-- root/root 1312 2026-08-05 19:59 ./usr/include/libmaus2/lz/BgzfVirtualOffset.hpp -rw-r--r-- root/root 1451 2026-08-05 19:59 ./usr/include/libmaus2/lz/BufferedGzipStream.hpp -rw-r--r-- root/root 1493 2026-08-05 19:59 ./usr/include/libmaus2/lz/BufferedGzipStreamBuffer.hpp -rw-r--r-- root/root 1187 2026-08-05 19:59 ./usr/include/libmaus2/lz/BufferedGzipStreamWrapper.hpp -rw-r--r-- root/root 1344 2026-08-05 19:59 ./usr/include/libmaus2/lz/CompressorObject.hpp -rw-r--r-- root/root 1523 2026-08-05 19:59 ./usr/include/libmaus2/lz/CompressorObjectFactory.hpp -rw-r--r-- root/root 1593 2026-08-05 19:59 ./usr/include/libmaus2/lz/CompressorObjectFreeListAllocator.hpp -rw-r--r-- root/root 3402 2026-08-05 19:59 ./usr/include/libmaus2/lz/CompressorObjectFreeListAllocatorFactory.hpp -rw-r--r-- root/root 1341 2026-08-05 19:59 ./usr/include/libmaus2/lz/DecompressorObject.hpp -rw-r--r-- root/root 1280 2026-08-05 19:59 ./usr/include/libmaus2/lz/DecompressorObjectFactory.hpp -rw-r--r-- root/root 1097 2026-08-05 19:59 ./usr/include/libmaus2/lz/DeflateDefaults.hpp -rw-r--r-- root/root 19809 2026-08-05 19:59 ./usr/include/libmaus2/lz/GzipHeader.hpp -rw-r--r-- root/root 1560 2026-08-05 19:59 ./usr/include/libmaus2/lz/GzipOutputStream.hpp -rw-r--r-- root/root 6530 2026-08-05 19:59 ./usr/include/libmaus2/lz/GzipOutputStreamBuffer.hpp -rw-r--r-- root/root 1974 2026-08-05 19:59 ./usr/include/libmaus2/lz/GzipSingleStream.hpp -rw-r--r-- root/root 2510 2026-08-05 19:59 ./usr/include/libmaus2/lz/GzipStream.hpp -rw-r--r-- root/root 1059 2026-08-05 19:59 ./usr/include/libmaus2/lz/GzipStreamWrapper.hpp -rw-r--r-- root/root 6235 2026-08-05 19:59 ./usr/include/libmaus2/lz/Inflate.hpp -rw-r--r-- root/root 1566 2026-08-05 19:59 ./usr/include/libmaus2/lz/IsGzip.hpp -rw-r--r-- root/root 2887 2026-08-05 19:59 ./usr/include/libmaus2/lz/IstreamSource.hpp -rw-r--r-- root/root 1620 2026-08-05 19:59 ./usr/include/libmaus2/lz/LineSplittingGzipOutputStream.hpp -rw-r--r-- root/root 10232 2026-08-05 19:59 ./usr/include/libmaus2/lz/LineSplittingGzipOutputStreamBuffer.hpp -rw-r--r-- root/root 1015 2026-08-05 19:59 ./usr/include/libmaus2/lz/Lz4Base.hpp -rw-r--r-- root/root 1743 2026-08-05 19:59 ./usr/include/libmaus2/lz/Lz4Compress.hpp -rw-r--r-- root/root 3233 2026-08-05 19:59 ./usr/include/libmaus2/lz/Lz4CompressStream.hpp -rw-r--r-- root/root 1812 2026-08-05 19:59 ./usr/include/libmaus2/lz/Lz4CompressStreamBuffer.hpp -rw-r--r-- root/root 1171 2026-08-05 19:59 ./usr/include/libmaus2/lz/Lz4CompressWrapper.hpp -rw-r--r-- root/root 1700 2026-08-05 19:59 ./usr/include/libmaus2/lz/Lz4Decoder.hpp -rw-r--r-- root/root 6409 2026-08-05 19:59 ./usr/include/libmaus2/lz/Lz4DecoderBuffer.hpp -rw-r--r-- root/root 2204 2026-08-05 19:59 ./usr/include/libmaus2/lz/Lz4Index.hpp -rw-r--r-- root/root 2206 2026-08-05 19:59 ./usr/include/libmaus2/lz/PlainOrGzipStream.hpp -rw-r--r-- root/root 3315 2026-08-05 19:59 ./usr/include/libmaus2/lz/PlainOrGzipStreamBufferWrapper.hpp -rw-r--r-- root/root 5505 2026-08-05 19:59 ./usr/include/libmaus2/lz/SimpleCompressedConcatInputStream.hpp -rw-r--r-- root/root 2259 2026-08-05 19:59 ./usr/include/libmaus2/lz/SimpleCompressedConcatInputStreamFragment.hpp -rw-r--r-- root/root 2971 2026-08-05 19:59 ./usr/include/libmaus2/lz/SimpleCompressedInputBlock.hpp -rw-r--r-- root/root 4160 2026-08-05 19:59 ./usr/include/libmaus2/lz/SimpleCompressedInputBlockConcat.hpp -rw-r--r-- root/root 2742 2026-08-05 19:59 ./usr/include/libmaus2/lz/SimpleCompressedInputBlockConcatBlock.hpp -rw-r--r-- root/root 5074 2026-08-05 19:59 ./usr/include/libmaus2/lz/SimpleCompressedInputStream.hpp -rw-r--r-- root/root 3581 2026-08-05 19:59 ./usr/include/libmaus2/lz/SimpleCompressedOutputStream.hpp -rw-r--r-- root/root 1349 2026-08-05 19:59 ./usr/include/libmaus2/lz/SimpleCompressedStreamInterval.hpp -rw-r--r-- root/root 1497 2026-08-05 19:59 ./usr/include/libmaus2/lz/SimpleCompressedStreamNamedInterval.hpp -rw-r--r-- root/root 2765 2026-08-05 19:59 ./usr/include/libmaus2/lz/SnappyCompress.hpp -rw-r--r-- root/root 1773 2026-08-05 19:59 ./usr/include/libmaus2/lz/SnappyCompressorObject.hpp -rw-r--r-- root/root 1527 2026-08-05 19:59 ./usr/include/libmaus2/lz/SnappyCompressorObjectFactory.hpp -rw-r--r-- root/root 1340 2026-08-05 19:59 ./usr/include/libmaus2/lz/SnappyCompressorObjectFactoryWrapper.hpp -rw-r--r-- root/root 1633 2026-08-05 19:59 ./usr/include/libmaus2/lz/SnappyCompressorObjectFreeListAllocator.hpp -rw-r--r-- root/root 1555 2026-08-05 19:59 ./usr/include/libmaus2/lz/SnappyDecompressorObject.hpp -rw-r--r-- root/root 1551 2026-08-05 19:59 ./usr/include/libmaus2/lz/SnappyDecompressorObjectFactory.hpp -rw-r--r-- root/root 1354 2026-08-05 19:59 ./usr/include/libmaus2/lz/SnappyFileInputStream.hpp -rw-r--r-- root/root 1662 2026-08-05 19:59 ./usr/include/libmaus2/lz/SnappyFileOutputStream.hpp -rw-r--r-- root/root 5457 2026-08-05 19:59 ./usr/include/libmaus2/lz/SnappyInputStream.hpp -rw-r--r-- root/root 1909 2026-08-05 19:59 ./usr/include/libmaus2/lz/SnappyInputStreamArray.hpp -rw-r--r-- root/root 2140 2026-08-05 19:59 ./usr/include/libmaus2/lz/SnappyInputStreamArrayFile.hpp -rw-r--r-- root/root 2156 2026-08-05 19:59 ./usr/include/libmaus2/lz/SnappyOffsetFileInputStream.hpp -rw-r--r-- root/root 3187 2026-08-05 19:59 ./usr/include/libmaus2/lz/SnappyOutputStream.hpp -rw-r--r-- root/root 1346 2026-08-05 19:59 ./usr/include/libmaus2/lz/SnappyStringInputStream.hpp -rw-r--r-- root/root 1389 2026-08-05 19:59 ./usr/include/libmaus2/lz/StdOstreamSink.hpp -rw-r--r-- root/root 1346 2026-08-05 19:59 ./usr/include/libmaus2/lz/StreamWrapper.hpp -rw-r--r-- root/root 2837 2026-08-05 19:59 ./usr/include/libmaus2/lz/StreamWrapperBuffer.hpp -rw-r--r-- root/root 1488 2026-08-05 19:59 ./usr/include/libmaus2/lz/XzDecoder.hpp -rw-r--r-- root/root 1383 2026-08-05 19:59 ./usr/include/libmaus2/lz/XzInputStream.hpp -rw-r--r-- root/root 2723 2026-08-05 19:59 ./usr/include/libmaus2/lz/XzInputStreamBuffer.hpp -rw-r--r-- root/root 3253 2026-08-05 19:59 ./usr/include/libmaus2/lz/ZlibCompressorObject.hpp -rw-r--r-- root/root 1704 2026-08-05 19:59 ./usr/include/libmaus2/lz/ZlibCompressorObjectFactory.hpp -rw-r--r-- root/root 1326 2026-08-05 19:59 ./usr/include/libmaus2/lz/ZlibCompressorObjectFactoryWrapper.hpp -rw-r--r-- root/root 1657 2026-08-05 19:59 ./usr/include/libmaus2/lz/ZlibCompressorObjectFreeListAllocator.hpp -rw-r--r-- root/root 1837 2026-08-05 19:59 ./usr/include/libmaus2/lz/ZlibDecompressorObject.hpp -rw-r--r-- root/root 1535 2026-08-05 19:59 ./usr/include/libmaus2/lz/ZlibDecompressorObjectFactory.hpp -rw-r--r-- root/root 2518 2026-08-05 19:59 ./usr/include/libmaus2/lz/ZlibInterface.hpp drwxr-xr-x root/root 0 2026-08-05 19:59 ./usr/include/libmaus2/math/ -rw-r--r-- root/root 1367 2026-08-05 19:59 ./usr/include/libmaus2/math/Bernoulli.hpp -rw-r--r-- root/root 3989 2026-08-05 19:59 ./usr/include/libmaus2/math/BernoulliNumber.hpp -rw-r--r-- root/root 1950 2026-08-05 19:59 ./usr/include/libmaus2/math/ClusteredBernoulli.hpp -rw-r--r-- root/root 2710 2026-08-05 19:59 ./usr/include/libmaus2/math/ConstantSumCombinatorics.hpp -rw-r--r-- root/root 10708 2026-08-05 19:59 ./usr/include/libmaus2/math/Convolution.hpp -rw-r--r-- root/root 14538 2026-08-05 19:59 ./usr/include/libmaus2/math/DecimalNumberParser.hpp -rw-r--r-- root/root 1872 2026-08-05 19:59 ./usr/include/libmaus2/math/Distribution.hpp -rw-r--r-- root/root 3297 2026-08-05 19:59 ./usr/include/libmaus2/math/DoubleCode.hpp -rw-r--r-- root/root 3971 2026-08-05 19:59 ./usr/include/libmaus2/math/Faulhaber.hpp -rw-r--r-- root/root 2478 2026-08-05 19:59 ./usr/include/libmaus2/math/GeneralisedBernoulli.hpp -rw-r--r-- root/root 3690 2026-08-05 19:59 ./usr/include/libmaus2/math/GeneralisedClusterBernoulli.hpp -rw-r--r-- root/root 4538 2026-08-05 19:59 ./usr/include/libmaus2/math/GmpFloat.hpp -rw-r--r-- root/root 3571 2026-08-05 19:59 ./usr/include/libmaus2/math/GmpInteger.hpp -rw-r--r-- root/root 2626 2026-08-05 19:59 ./usr/include/libmaus2/math/HistogramBuckets.hpp -rw-r--r-- root/root 1128 2026-08-05 19:59 ./usr/include/libmaus2/math/IPower.hpp -rw-r--r-- root/root 10820 2026-08-05 19:59 ./usr/include/libmaus2/math/IntegerInterval.hpp -rw-r--r-- root/root 1197 2026-08-05 19:59 ./usr/include/libmaus2/math/LGammaCache.hpp -rw-r--r-- root/root 1340 2026-08-05 19:59 ./usr/include/libmaus2/math/Log.hpp -rw-r--r-- root/root 1573 2026-08-05 19:59 ./usr/include/libmaus2/math/LogNormalDistribution.hpp -rw-r--r-- root/root 8767 2026-08-05 19:59 ./usr/include/libmaus2/math/Matrix.hpp -rw-r--r-- root/root 2032 2026-08-05 19:59 ./usr/include/libmaus2/math/MetaLog.hpp -rw-r--r-- root/root 1526 2026-08-05 19:59 ./usr/include/libmaus2/math/NormalDistribution.hpp -rw-r--r-- root/root 7792 2026-08-05 19:59 ./usr/include/libmaus2/math/Rational.hpp -rw-r--r-- root/root 2562 2026-08-05 19:59 ./usr/include/libmaus2/math/RationalPolynomialSupport.hpp -rw-r--r-- root/root 2687 2026-08-05 19:59 ./usr/include/libmaus2/math/RepetetiveKmerFreqEstimate.hpp -rw-r--r-- root/root 16805 2026-08-05 19:59 ./usr/include/libmaus2/math/UnsignedInteger.hpp -rw-r--r-- root/root 17515 2026-08-05 19:59 ./usr/include/libmaus2/math/binom.hpp -rw-r--r-- root/root 1328 2026-08-05 19:59 ./usr/include/libmaus2/math/bitsPerNum.hpp -rw-r--r-- root/root 1094 2026-08-05 19:59 ./usr/include/libmaus2/math/gcd.hpp -rw-r--r-- root/root 1027 2026-08-05 19:59 ./usr/include/libmaus2/math/iabs.hpp -rw-r--r-- root/root 1073 2026-08-05 19:59 ./usr/include/libmaus2/math/ilog.hpp -rw-r--r-- root/root 1386 2026-08-05 19:59 ./usr/include/libmaus2/math/ipow.hpp -rw-r--r-- root/root 1368 2026-08-05 19:59 ./usr/include/libmaus2/math/isqrt.hpp -rw-r--r-- root/root 1722 2026-08-05 19:59 ./usr/include/libmaus2/math/lowbits.hpp -rw-r--r-- root/root 3489 2026-08-05 19:59 ./usr/include/libmaus2/math/numbits.hpp -rw-r--r-- root/root 902 2026-08-05 19:59 ./usr/include/libmaus2/math/primes16.hpp drwxr-xr-x root/root 0 2026-08-05 19:59 ./usr/include/libmaus2/network/ -rw-r--r-- root/root 977 2026-08-05 19:59 ./usr/include/libmaus2/network/CurlInitObject.hpp -rw-r--r-- root/root 1284 2026-08-05 19:59 ./usr/include/libmaus2/network/CurlInputStream.hpp -rw-r--r-- root/root 1670 2026-08-05 19:59 ./usr/include/libmaus2/network/CurlInputStreamBuffer.hpp -rw-r--r-- root/root 3664 2026-08-05 19:59 ./usr/include/libmaus2/network/CurlObject.hpp -rw-r--r-- root/root 1851 2026-08-05 19:59 ./usr/include/libmaus2/network/CurlObjectReader.hpp -rw-r--r-- root/root 1554 2026-08-05 19:59 ./usr/include/libmaus2/network/CurlObjectThreadCallable.hpp -rw-r--r-- root/root 1220 2026-08-05 19:59 ./usr/include/libmaus2/network/CurlOutputBlock.hpp -rw-r--r-- root/root 1235 2026-08-05 19:59 ./usr/include/libmaus2/network/CurlResponseAcceptor.hpp -rw-r--r-- root/root 1684 2026-08-05 19:59 ./usr/include/libmaus2/network/FileUrl.hpp -rw-r--r-- root/root 1311 2026-08-05 19:59 ./usr/include/libmaus2/network/FtpCurlResponseAcceptor.hpp -rw-r--r-- root/root 1050 2026-08-05 19:59 ./usr/include/libmaus2/network/GetHostName.hpp -rw-r--r-- root/root 1316 2026-08-05 19:59 ./usr/include/libmaus2/network/HttpCurlResponseAcceptor.hpp -rw-r--r-- root/root 1683 2026-08-05 19:59 ./usr/include/libmaus2/network/UrlBase.hpp -rw-r--r-- root/root 1473 2026-08-05 19:59 ./usr/include/libmaus2/network/UrlInputStream.hpp -rw-r--r-- root/root 3035 2026-08-05 19:59 ./usr/include/libmaus2/network/UrlInputStreamBufferWrapper.hpp -rw-r--r-- root/root 1885 2026-08-05 19:59 ./usr/include/libmaus2/network/UrlInputStreamFactory.hpp drwxr-xr-x root/root 0 2026-08-05 19:59 ./usr/include/libmaus2/parallel/ -rw-r--r-- root/root 1652 2026-08-05 19:59 ./usr/include/libmaus2/parallel/AtomicPtrHeap.hpp -rw-r--r-- root/root 2486 2026-08-05 19:59 ./usr/include/libmaus2/parallel/AtomicPtrQueue.hpp -rw-r--r-- root/root 5307 2026-08-05 19:59 ./usr/include/libmaus2/parallel/AtomicPtrStack.hpp -rw-r--r-- root/root 2418 2026-08-05 19:59 ./usr/include/libmaus2/parallel/AtomicQueue.hpp -rw-r--r-- root/root 1983 2026-08-05 19:59 ./usr/include/libmaus2/parallel/AtomicStack.hpp -rw-r--r-- root/root 1126 2026-08-05 19:59 ./usr/include/libmaus2/parallel/LockedBool.hpp -rw-r--r-- root/root 2225 2026-08-05 19:59 ./usr/include/libmaus2/parallel/LockedCounter.hpp -rw-r--r-- root/root 3581 2026-08-05 19:59 ./usr/include/libmaus2/parallel/LockedFreeList.hpp -rw-r--r-- root/root 3198 2026-08-05 19:59 ./usr/include/libmaus2/parallel/LockedGrowingFreeList.hpp -rw-r--r-- root/root 2298 2026-08-05 19:59 ./usr/include/libmaus2/parallel/LockedHeap.hpp -rw-r--r-- root/root 3813 2026-08-05 19:59 ./usr/include/libmaus2/parallel/LockedQueue.hpp -rw-r--r-- root/root 1122 2026-08-05 19:59 ./usr/include/libmaus2/parallel/NumCpus.hpp -rw-r--r-- root/root 1537 2026-08-05 19:59 ./usr/include/libmaus2/parallel/OMPNumThreadsScope.hpp -rw-r--r-- root/root 10068 2026-08-05 19:59 ./usr/include/libmaus2/parallel/SimpleThreadPool.hpp -rw-r--r-- root/root 1068 2026-08-05 19:59 ./usr/include/libmaus2/parallel/SimpleThreadPoolBase.hpp -rw-r--r-- root/root 1702 2026-08-05 19:59 ./usr/include/libmaus2/parallel/SimpleThreadPoolInterface.hpp -rw-r--r-- root/root 1250 2026-08-05 19:59 ./usr/include/libmaus2/parallel/SimpleThreadPoolInterfaceEnqueTermInterface.hpp -rw-r--r-- root/root 3218 2026-08-05 19:59 ./usr/include/libmaus2/parallel/SimpleThreadPoolThread.hpp -rw-r--r-- root/root 1860 2026-08-05 19:59 ./usr/include/libmaus2/parallel/SimpleThreadPoolThreadId.hpp -rw-r--r-- root/root 3730 2026-08-05 19:59 ./usr/include/libmaus2/parallel/SimpleThreadPoolThreadIdNode.hpp -rw-r--r-- root/root 7748 2026-08-05 19:59 ./usr/include/libmaus2/parallel/SimpleThreadPoolThreadIdTree.hpp -rw-r--r-- root/root 2568 2026-08-05 19:59 ./usr/include/libmaus2/parallel/SimpleThreadPoolWorkPackageFreeList.hpp -rw-r--r-- root/root 2556 2026-08-05 19:59 ./usr/include/libmaus2/parallel/SimpleThreadWorkPackage.hpp -rw-r--r-- root/root 1658 2026-08-05 19:59 ./usr/include/libmaus2/parallel/SimpleThreadWorkPackageComparator.hpp -rw-r--r-- root/root 1475 2026-08-05 19:59 ./usr/include/libmaus2/parallel/SimpleThreadWorkPackageDispatcher.hpp -rw-r--r-- root/root 3951 2026-08-05 19:59 ./usr/include/libmaus2/parallel/StdBasicSpinLock.hpp -rw-r--r-- root/root 3374 2026-08-05 19:59 ./usr/include/libmaus2/parallel/StdMutex.hpp -rw-r--r-- root/root 1874 2026-08-05 19:59 ./usr/include/libmaus2/parallel/StdSemaphore.hpp -rw-r--r-- root/root 3378 2026-08-05 19:59 ./usr/include/libmaus2/parallel/StdSpinLock.hpp -rw-r--r-- root/root 5233 2026-08-05 19:59 ./usr/include/libmaus2/parallel/StdSynchronousConditionQueue.hpp -rw-r--r-- root/root 8017 2026-08-05 19:59 ./usr/include/libmaus2/parallel/StdSynchronousHeap.hpp -rw-r--r-- root/root 4555 2026-08-05 19:59 ./usr/include/libmaus2/parallel/StdSynchronousQueue.hpp -rw-r--r-- root/root 5311 2026-08-05 19:59 ./usr/include/libmaus2/parallel/StdTerminatableSynchronousHeap.hpp -rw-r--r-- root/root 6638 2026-08-05 19:59 ./usr/include/libmaus2/parallel/StdTerminatableSynchronousQueue.hpp -rw-r--r-- root/root 5057 2026-08-05 19:59 ./usr/include/libmaus2/parallel/StdThread.hpp -rw-r--r-- root/root 1938 2026-08-05 19:59 ./usr/include/libmaus2/parallel/SynchronousCounter.hpp drwxr-xr-x root/root 0 2026-08-05 19:59 ./usr/include/libmaus2/parallel/threadpool/ -rw-r--r-- root/root 2962 2026-08-05 19:59 ./usr/include/libmaus2/parallel/threadpool/LockedMap.hpp -rw-r--r-- root/root 10039 2026-08-05 19:59 ./usr/include/libmaus2/parallel/threadpool/ThreadPool.hpp -rw-r--r-- root/root 2387 2026-08-05 19:59 ./usr/include/libmaus2/parallel/threadpool/ThreadPoolDispatcher.hpp -rw-r--r-- root/root 1888 2026-08-05 19:59 ./usr/include/libmaus2/parallel/threadpool/ThreadWorkPackage.hpp -rw-r--r-- root/root 1511 2026-08-05 19:59 ./usr/include/libmaus2/parallel/threadpool/ThreadWorkPackageData.hpp drwxr-xr-x root/root 0 2026-08-05 19:59 ./usr/include/libmaus2/parallel/threadpool/bam/ -rw-r--r-- root/root 3690 2026-08-05 19:59 ./usr/include/libmaus2/parallel/threadpool/bam/BamHeaderSeqData.hpp -rw-r--r-- root/root 2614 2026-08-05 19:59 ./usr/include/libmaus2/parallel/threadpool/bam/BamParseContext.hpp -rw-r--r-- root/root 1207 2026-08-05 19:59 ./usr/include/libmaus2/parallel/threadpool/bam/BamParseHeaderData.hpp -rw-r--r-- root/root 3900 2026-08-05 19:59 ./usr/include/libmaus2/parallel/threadpool/bam/BamParseOutputQueue.hpp -rw-r--r-- root/root 2351 2026-08-05 19:59 ./usr/include/libmaus2/parallel/threadpool/bam/BamParsePackageData.hpp -rw-r--r-- root/root 1503 2026-08-05 19:59 ./usr/include/libmaus2/parallel/threadpool/bam/BamParsePackageDataDispatcher.hpp -rw-r--r-- root/root 1163 2026-08-05 19:59 ./usr/include/libmaus2/parallel/threadpool/bam/BamParsePackageDataHandler.hpp -rw-r--r-- root/root 10710 2026-08-05 19:59 ./usr/include/libmaus2/parallel/threadpool/bam/ThreadPoolBamParseControl.hpp -rw-r--r-- root/root 1234 2026-08-05 19:59 ./usr/include/libmaus2/parallel/threadpool/bam/ThreadPoolBamParseHandler.hpp -rw-r--r-- root/root 2075 2026-08-05 19:59 ./usr/include/libmaus2/parallel/threadpool/bam/ThreadPoolBamParseTrivialReturnHandler.hpp drwxr-xr-x root/root 0 2026-08-05 19:59 ./usr/include/libmaus2/parallel/threadpool/bgzf/ -rw-r--r-- root/root 2062 2026-08-05 19:59 ./usr/include/libmaus2/parallel/threadpool/bgzf/BgzfBlockInfo.hpp -rw-r--r-- root/root 13130 2026-08-05 19:59 ./usr/include/libmaus2/parallel/threadpool/bgzf/BgzfBlockInfoEnqueDecompressHandler.hpp -rw-r--r-- root/root 1352 2026-08-05 19:59 ./usr/include/libmaus2/parallel/threadpool/bgzf/BgzfBlockInfoHandlerInterface.hpp -rw-r--r-- root/root 2111 2026-08-05 19:59 ./usr/include/libmaus2/parallel/threadpool/bgzf/BgzfBlockInfoTrivialReturnHandler.hpp -rw-r--r-- root/root 2113 2026-08-05 19:59 ./usr/include/libmaus2/parallel/threadpool/bgzf/BgzfBlockSummary.hpp -rw-r--r-- root/root 1573 2026-08-05 19:59 ./usr/include/libmaus2/parallel/threadpool/bgzf/BgzfDataDecompressedInterface.hpp -rw-r--r-- root/root 2747 2026-08-05 19:59 ./usr/include/libmaus2/parallel/threadpool/bgzf/BgzfDataDecompressedTrivialReturnInterface.hpp -rw-r--r-- root/root 1946 2026-08-05 19:59 ./usr/include/libmaus2/parallel/threadpool/bgzf/BgzfDecompressContext.hpp -rw-r--r-- root/root 2148 2026-08-05 19:59 ./usr/include/libmaus2/parallel/threadpool/bgzf/BgzfDecompressPackageData.hpp -rw-r--r-- root/root 1725 2026-08-05 19:59 ./usr/include/libmaus2/parallel/threadpool/bgzf/BgzfDecompressPackageDataDispatcher.hpp -rw-r--r-- root/root 2769 2026-08-05 19:59 ./usr/include/libmaus2/parallel/threadpool/bgzf/BgzfDecompressedBlock.hpp -rw-r--r-- root/root 3842 2026-08-05 19:59 ./usr/include/libmaus2/parallel/threadpool/bgzf/BgzfHeaderDecoder.hpp -rw-r--r-- root/root 2533 2026-08-05 19:59 ./usr/include/libmaus2/parallel/threadpool/bgzf/BgzfHeaderDecoderBase.hpp -rw-r--r-- root/root 5115 2026-08-05 19:59 ./usr/include/libmaus2/parallel/threadpool/bgzf/BgzfInputReadInterface.hpp -rw-r--r-- root/root 7398 2026-08-05 19:59 ./usr/include/libmaus2/parallel/threadpool/bgzf/BgzfInputThreadControl.hpp -rw-r--r-- root/root 2717 2026-08-05 19:59 ./usr/include/libmaus2/parallel/threadpool/bgzf/GenericBlock.hpp -rw-r--r-- root/root 1973 2026-08-05 19:59 ./usr/include/libmaus2/parallel/threadpool/bgzf/ReadInfo.hpp -rw-r--r-- root/root 3100 2026-08-05 19:59 ./usr/include/libmaus2/parallel/threadpool/bgzf/ThreadPoolBGZFDecompressControl.hpp -rw-r--r-- root/root 2652 2026-08-05 19:59 ./usr/include/libmaus2/parallel/threadpool/bgzf/ThreadPoolBGZFReadControl.hpp drwxr-xr-x root/root 0 2026-08-05 19:59 ./usr/include/libmaus2/parallel/threadpool/cram/ -rw-r--r-- root/root 1726 2026-08-05 19:59 ./usr/include/libmaus2/parallel/threadpool/cram/CramEncodingWorkPackageData.hpp -rw-r--r-- root/root 1600 2026-08-05 19:59 ./usr/include/libmaus2/parallel/threadpool/cram/CramEncodingWorkPackageDispatcher.hpp -rw-r--r-- root/root 1859 2026-08-05 19:59 ./usr/include/libmaus2/parallel/threadpool/cram/CramEnqueuePackageData.hpp -rw-r--r-- root/root 1591 2026-08-05 19:59 ./usr/include/libmaus2/parallel/threadpool/cram/CramEnqueuePackageDataDispatcher.hpp -rw-r--r-- root/root 1302 2026-08-05 19:59 ./usr/include/libmaus2/parallel/threadpool/cram/CramEnqueuePackageDataHandler.hpp -rw-r--r-- root/root 20188 2026-08-05 19:59 ./usr/include/libmaus2/parallel/threadpool/cram/ThreadPoolCramEnqueueControl.hpp drwxr-xr-x root/root 0 2026-08-05 19:59 ./usr/include/libmaus2/parallel/threadpool/input/ -rw-r--r-- root/root 1254 2026-08-05 19:59 ./usr/include/libmaus2/parallel/threadpool/input/InputThreadCallbackInterface.hpp -rw-r--r-- root/root 5266 2026-08-05 19:59 ./usr/include/libmaus2/parallel/threadpool/input/InputThreadControl.hpp -rw-r--r-- root/root 1622 2026-08-05 19:59 ./usr/include/libmaus2/parallel/threadpool/input/InputThreadPackageData.hpp -rw-r--r-- root/root 3990 2026-08-05 19:59 ./usr/include/libmaus2/parallel/threadpool/input/InputThreadPackageDispatcher.hpp -rw-r--r-- root/root 2337 2026-08-05 19:59 ./usr/include/libmaus2/parallel/threadpool/input/InputThreadTrivialReturnInterface.hpp -rw-r--r-- root/root 3028 2026-08-05 19:59 ./usr/include/libmaus2/parallel/threadpool/input/ThreadPoolInputBlock.hpp -rw-r--r-- root/root 4545 2026-08-05 19:59 ./usr/include/libmaus2/parallel/threadpool/input/ThreadPoolInputInfo.hpp drwxr-xr-x root/root 0 2026-08-05 19:59 ./usr/include/libmaus2/posix/ -rw-r--r-- root/root 1089 2026-08-05 19:59 ./usr/include/libmaus2/posix/PosixExecute.hpp -rw-r--r-- root/root 5394 2026-08-05 19:59 ./usr/include/libmaus2/posix/PosixFunctions.hpp drwxr-xr-x root/root 0 2026-08-05 19:59 ./usr/include/libmaus2/protein/ -rw-r--r-- root/root 20358 2026-08-05 19:59 ./usr/include/libmaus2/protein/Align.hpp -rw-r--r-- root/root 17586 2026-08-05 19:59 ./usr/include/libmaus2/protein/AlignGlobal.hpp -rw-r--r-- root/root 1022 2026-08-05 19:59 ./usr/include/libmaus2/protein/Blosum62.hpp -rw-r--r-- root/root 4878 2026-08-05 19:59 ./usr/include/libmaus2/protein/CodonMapper.hpp -rw-r--r-- root/root 10294 2026-08-05 19:59 ./usr/include/libmaus2/protein/ProteinAlignment.hpp drwxr-xr-x root/root 0 2026-08-05 19:59 ./usr/include/libmaus2/quantisation/ -rw-r--r-- root/root 1591 2026-08-05 19:59 ./usr/include/libmaus2/quantisation/ClusterComputation.hpp -rw-r--r-- root/root 1038 2026-08-05 19:59 ./usr/include/libmaus2/quantisation/KmeansDataType.hpp -rw-r--r-- root/root 3738 2026-08-05 19:59 ./usr/include/libmaus2/quantisation/Quantiser.hpp drwxr-xr-x root/root 0 2026-08-05 19:59 ./usr/include/libmaus2/random/ -rw-r--r-- root/root 22591 2026-08-05 19:59 ./usr/include/libmaus2/random/DNABaseNoiseSpiker.hpp -rw-r--r-- root/root 2390 2026-08-05 19:59 ./usr/include/libmaus2/random/GaussianRandom.hpp -rw-r--r-- root/root 5310 2026-08-05 19:59 ./usr/include/libmaus2/random/LogNormalRandom.hpp -rw-r--r-- root/root 3897 2026-08-05 19:59 ./usr/include/libmaus2/random/Poisson.hpp -rw-r--r-- root/root 1853 2026-08-05 19:59 ./usr/include/libmaus2/random/Random.hpp -rw-r--r-- root/root 1138 2026-08-05 19:59 ./usr/include/libmaus2/random/UniformUnitRandom.hpp drwxr-xr-x root/root 0 2026-08-05 19:59 ./usr/include/libmaus2/rank/ -rw-r--r-- root/root 2320 2026-08-05 19:59 ./usr/include/libmaus2/rank/BSwapBase.hpp -rw-r--r-- root/root 8730 2026-08-05 19:59 ./usr/include/libmaus2/rank/CacheLineRank.hpp -rw-r--r-- root/root 3484 2026-08-05 19:59 ./usr/include/libmaus2/rank/ChooseCache.hpp -rw-r--r-- root/root 1475 2026-08-05 19:59 ./usr/include/libmaus2/rank/CodeBase.hpp -rw-r--r-- root/root 48606 2026-08-05 19:59 ./usr/include/libmaus2/rank/DNARank.hpp -rw-r--r-- root/root 7921 2026-08-05 19:59 ./usr/include/libmaus2/rank/DNARankBiDir.hpp -rw-r--r-- root/root 1559 2026-08-05 19:59 ./usr/include/libmaus2/rank/DNARankBiDirRange.hpp -rw-r--r-- root/root 1151 2026-08-05 19:59 ./usr/include/libmaus2/rank/DNARankBiDirRangeSizeComparator.hpp -rw-r--r-- root/root 1527 2026-08-05 19:59 ./usr/include/libmaus2/rank/DNARankGetPosition.hpp -rw-r--r-- root/root 7526 2026-08-05 19:59 ./usr/include/libmaus2/rank/DNARankKmerCache.hpp -rw-r--r-- root/root 1787 2026-08-05 19:59 ./usr/include/libmaus2/rank/DNARankMEM.hpp -rw-r--r-- root/root 1193 2026-08-05 19:59 ./usr/include/libmaus2/rank/DNARankMEMPosComparator.hpp -rw-r--r-- root/root 29607 2026-08-05 19:59 ./usr/include/libmaus2/rank/DNARankSMEMComputation.hpp -rw-r--r-- root/root 3696 2026-08-05 19:59 ./usr/include/libmaus2/rank/DNARankSMEMContext.hpp -rw-r--r-- root/root 3882 2026-08-05 19:59 ./usr/include/libmaus2/rank/DNARankSuffixTreeNodeEnumerator.hpp -rw-r--r-- root/root 1327 2026-08-05 19:59 ./usr/include/libmaus2/rank/DNARankSuffixTreeNodeEnumeratorQueueElement.hpp -rw-r--r-- root/root 2010 2026-08-05 19:59 ./usr/include/libmaus2/rank/DecodeCache.hpp -rw-r--r-- root/root 5379 2026-08-05 19:59 ./usr/include/libmaus2/rank/ERank.hpp -rw-r--r-- root/root 5648 2026-08-05 19:59 ./usr/include/libmaus2/rank/ERank2.hpp -rw-r--r-- root/root 7277 2026-08-05 19:59 ./usr/include/libmaus2/rank/ERank22.hpp -rw-r--r-- root/root 7352 2026-08-05 19:59 ./usr/include/libmaus2/rank/ERank222.hpp -rw-r--r-- root/root 11087 2026-08-05 19:59 ./usr/include/libmaus2/rank/ERank222B.hpp -rw-r--r-- root/root 7319 2026-08-05 19:59 ./usr/include/libmaus2/rank/ERank222BAppend.hpp -rw-r--r-- root/root 6913 2026-08-05 19:59 ./usr/include/libmaus2/rank/ERank222BAppendDynamic.hpp -rw-r--r-- root/root 1756 2026-08-05 19:59 ./usr/include/libmaus2/rank/ERank222BBase.hpp -rw-r--r-- root/root 7434 2026-08-05 19:59 ./usr/include/libmaus2/rank/ERank222BP.hpp -rw-r--r-- root/root 7284 2026-08-05 19:59 ./usr/include/libmaus2/rank/ERank22B.hpp -rw-r--r-- root/root 8186 2026-08-05 19:59 ./usr/include/libmaus2/rank/ERank3.hpp -rw-r--r-- root/root 14159 2026-08-05 19:59 ./usr/include/libmaus2/rank/ERank3C.hpp -rw-r--r-- root/root 10601 2026-08-05 19:59 ./usr/include/libmaus2/rank/ERankBase.hpp -rw-r--r-- root/root 2352 2026-08-05 19:59 ./usr/include/libmaus2/rank/EncodeCache.hpp -rw-r--r-- root/root 7890 2026-08-05 19:59 ./usr/include/libmaus2/rank/FastRank.hpp -rw-r--r-- root/root 19338 2026-08-05 19:59 ./usr/include/libmaus2/rank/ImpCacheLineRank.hpp -rw-r--r-- root/root 1813 2026-08-05 19:59 ./usr/include/libmaus2/rank/Proc01.hpp -rw-r--r-- root/root 2538 2026-08-05 19:59 ./usr/include/libmaus2/rank/RankTable.hpp -rw-r--r-- root/root 11582 2026-08-05 19:59 ./usr/include/libmaus2/rank/RunLengthBitVector.hpp -rw-r--r-- root/root 1084 2026-08-05 19:59 ./usr/include/libmaus2/rank/RunLengthBitVectorBase.hpp -rw-r--r-- root/root 6739 2026-08-05 19:59 ./usr/include/libmaus2/rank/RunLengthBitVectorGenerator.hpp -rw-r--r-- root/root 3850 2026-08-05 19:59 ./usr/include/libmaus2/rank/RunLengthBitVectorGeneratorBase.hpp -rw-r--r-- root/root 1574 2026-08-05 19:59 ./usr/include/libmaus2/rank/RunLengthBitVectorGeneratorGammaBase.hpp -rw-r--r-- root/root 6444 2026-08-05 19:59 ./usr/include/libmaus2/rank/RunLengthBitVectorStream.hpp -rw-r--r-- root/root 2238 2026-08-05 19:59 ./usr/include/libmaus2/rank/log2table.hpp -rw-r--r-- root/root 5590 2026-08-05 19:59 ./usr/include/libmaus2/rank/popcnt.hpp drwxr-xr-x root/root 0 2026-08-05 19:59 ./usr/include/libmaus2/rl/ -rw-r--r-- root/root 27589 2026-08-05 19:59 ./usr/include/libmaus2/rl/RLIndex.hpp drwxr-xr-x root/root 0 2026-08-05 19:59 ./usr/include/libmaus2/rmq/ -rw-r--r-- root/root 6293 2026-08-05 19:59 ./usr/include/libmaus2/rmq/CartesianTree.hpp -rw-r--r-- root/root 3650 2026-08-05 19:59 ./usr/include/libmaus2/rmq/QuickDynamicRMQ.hpp -rw-r--r-- root/root 19177 2026-08-05 19:59 ./usr/include/libmaus2/rmq/RMMTree.hpp drwxr-xr-x root/root 0 2026-08-05 19:59 ./usr/include/libmaus2/select/ -rw-r--r-- root/root 14348 2026-08-05 19:59 ./usr/include/libmaus2/select/ESelect222B.hpp -rw-r--r-- root/root 2213 2026-08-05 19:59 ./usr/include/libmaus2/select/ESelectBase.hpp -rw-r--r-- root/root 3960 2026-08-05 19:59 ./usr/include/libmaus2/select/ESelectSimple.hpp -rw-r--r-- root/root 4519 2026-08-05 19:59 ./usr/include/libmaus2/select/ImpCacheLineSelectSupport.hpp drwxr-xr-x root/root 0 2026-08-05 19:59 ./usr/include/libmaus2/serialize/ -rw-r--r-- root/root 27348 2026-08-05 19:59 ./usr/include/libmaus2/serialize/Serialize.hpp drwxr-xr-x root/root 0 2026-08-05 19:59 ./usr/include/libmaus2/sorting/ -rw-r--r-- root/root 18552 2026-08-05 19:59 ./usr/include/libmaus2/sorting/InPlaceParallelSort.hpp -rw-r--r-- root/root 30719 2026-08-05 19:59 ./usr/include/libmaus2/sorting/InterleavedRadixSort.hpp -rw-r--r-- root/root 6709 2026-08-05 19:59 ./usr/include/libmaus2/sorting/MergeStepBinSearchResult.hpp -rw-r--r-- root/root 14971 2026-08-05 19:59 ./usr/include/libmaus2/sorting/MergingReadBack.hpp -rw-r--r-- root/root 23480 2026-08-05 19:59 ./usr/include/libmaus2/sorting/PairFileSorting.hpp -rw-r--r-- root/root 6645 2026-08-05 19:59 ./usr/include/libmaus2/sorting/ParallelExternalRadixSort.hpp -rw-r--r-- root/root 13040 2026-08-05 19:59 ./usr/include/libmaus2/sorting/ParallelRadixSort.hpp -rw-r--r-- root/root 13075 2026-08-05 19:59 ./usr/include/libmaus2/sorting/ParallelRunLengthRadixSort.hpp -rw-r--r-- root/root 4941 2026-08-05 19:59 ./usr/include/libmaus2/sorting/ParallelRunLengthRadixUnsort.hpp -rw-r--r-- root/root 15942 2026-08-05 19:59 ./usr/include/libmaus2/sorting/ParallelStableSort.hpp -rw-r--r-- root/root 50251 2026-08-05 19:59 ./usr/include/libmaus2/sorting/RankSearch.hpp -rw-r--r-- root/root 9829 2026-08-05 19:59 ./usr/include/libmaus2/sorting/SemiExternalKeyTupleSort.hpp -rw-r--r-- root/root 6885 2026-08-05 19:59 ./usr/include/libmaus2/sorting/SerialRadixSort64.hpp -rw-r--r-- root/root 34002 2026-08-05 19:59 ./usr/include/libmaus2/sorting/SortingBufferedOutputFile.hpp -rw-r--r-- root/root 8443 2026-08-05 19:59 ./usr/include/libmaus2/sorting/sorting.hpp drwxr-xr-x root/root 0 2026-08-05 19:59 ./usr/include/libmaus2/stacktrace/ -rw-r--r-- root/root 998 2026-08-05 19:59 ./usr/include/libmaus2/stacktrace/StackLineTranslator.hpp -rw-r--r-- root/root 1619 2026-08-05 19:59 ./usr/include/libmaus2/stacktrace/StackTrace.hpp -rw-r--r-- root/root 1851 2026-08-05 19:59 ./usr/include/libmaus2/stacktrace/StackTraceBufferContainer.hpp drwxr-xr-x root/root 0 2026-08-05 19:59 ./usr/include/libmaus2/suffixsort/ -rw-r--r-- root/root 40394 2026-08-05 19:59 ./usr/include/libmaus2/suffixsort/BwtMergeBlockSortRequest.hpp -rw-r--r-- root/root 3352 2026-08-05 19:59 ./usr/include/libmaus2/suffixsort/BwtMergeBlockSortRequestBase.hpp -rw-r--r-- root/root 5790 2026-08-05 19:59 ./usr/include/libmaus2/suffixsort/BwtMergeBlockSortResult.hpp -rw-r--r-- root/root 1228 2026-08-05 19:59 ./usr/include/libmaus2/suffixsort/BwtMergeEnumBase.hpp -rw-r--r-- root/root 14772 2026-08-05 19:59 ./usr/include/libmaus2/suffixsort/BwtMergeTempFileNameSet.hpp -rw-r--r-- root/root 2613 2026-08-05 19:59 ./usr/include/libmaus2/suffixsort/BwtMergeTempFileNameSetVector.hpp -rw-r--r-- root/root 2598 2026-08-05 19:59 ./usr/include/libmaus2/suffixsort/BwtMergeZBlock.hpp -rw-r--r-- root/root 1920 2026-08-05 19:59 ./usr/include/libmaus2/suffixsort/BwtMergeZBlockRequest.hpp -rw-r--r-- root/root 2898 2026-08-05 19:59 ./usr/include/libmaus2/suffixsort/BwtMergeZBlockRequestVector.hpp -rw-r--r-- root/root 2671 2026-08-05 19:59 ./usr/include/libmaus2/suffixsort/ByteInputTypes.hpp -rw-r--r-- root/root 2875 2026-08-05 19:59 ./usr/include/libmaus2/suffixsort/CircularBwt.hpp -rw-r--r-- root/root 9893 2026-08-05 19:59 ./usr/include/libmaus2/suffixsort/CircularSuffixComparator.hpp -rw-r--r-- root/root 2764 2026-08-05 19:59 ./usr/include/libmaus2/suffixsort/CompactInputTypes.hpp -rw-r--r-- root/root 8803 2026-08-05 19:59 ./usr/include/libmaus2/suffixsort/GapArrayByte.hpp -rw-r--r-- root/root 4143 2026-08-05 19:59 ./usr/include/libmaus2/suffixsort/GapArrayByteDecoder.hpp -rw-r--r-- root/root 2589 2026-08-05 19:59 ./usr/include/libmaus2/suffixsort/GapArrayByteDecoderBuffer.hpp -rw-r--r-- root/root 1457 2026-08-05 19:59 ./usr/include/libmaus2/suffixsort/GapArrayByteOverflowKeyAccessor.hpp -rw-r--r-- root/root 1403 2026-08-05 19:59 ./usr/include/libmaus2/suffixsort/GapMergePacket.hpp -rw-r--r-- root/root 2616 2026-08-05 19:59 ./usr/include/libmaus2/suffixsort/Lz4InputTypes.hpp -rw-r--r-- root/root 2677 2026-08-05 19:59 ./usr/include/libmaus2/suffixsort/PacInputTypes.hpp -rw-r--r-- root/root 2713 2026-08-05 19:59 ./usr/include/libmaus2/suffixsort/PacTermInputTypes.hpp -rw-r--r-- root/root 18414 2026-08-05 19:59 ./usr/include/libmaus2/suffixsort/SkewSuffixSort.hpp -rw-r--r-- root/root 2560 2026-08-05 19:59 ./usr/include/libmaus2/suffixsort/SmallestRotation.hpp -rw-r--r-- root/root 3389 2026-08-05 19:59 ./usr/include/libmaus2/suffixsort/Utf8InputTypes.hpp drwxr-xr-x root/root 0 2026-08-05 19:59 ./usr/include/libmaus2/suffixsort/bwtb3m/ -rw-r--r-- root/root 1551 2026-08-05 19:59 ./usr/include/libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp -rw-r--r-- root/root 5365 2026-08-05 19:59 ./usr/include/libmaus2/suffixsort/bwtb3m/BaseBlockSortThread.hpp -rw-r--r-- root/root 4121 2026-08-05 19:59 ./usr/include/libmaus2/suffixsort/bwtb3m/BaseBlockSorting.hpp -rw-r--r-- root/root 1764 2026-08-05 19:59 ./usr/include/libmaus2/suffixsort/bwtb3m/BwtComputeSSA.hpp -rw-r--r-- root/root 15967 2026-08-05 19:59 ./usr/include/libmaus2/suffixsort/bwtb3m/BwtMergeComputeSampledSA.hpp -rw-r--r-- root/root 4024 2026-08-05 19:59 ./usr/include/libmaus2/suffixsort/bwtb3m/BwtMergeIsaBase.hpp -rw-r--r-- root/root 7221 2026-08-05 19:59 ./usr/include/libmaus2/suffixsort/bwtb3m/BwtMergeIsaParallelBase.hpp -rw-r--r-- root/root 1918 2026-08-05 19:59 ./usr/include/libmaus2/suffixsort/bwtb3m/BwtMergeParallelGapFragMerge.hpp -rw-r--r-- root/root 1446 2026-08-05 19:59 ./usr/include/libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp -rw-r--r-- root/root 15825 2026-08-05 19:59 ./usr/include/libmaus2/suffixsort/bwtb3m/BwtMergeSortOptions.hpp -rw-r--r-- root/root 20625 2026-08-05 19:59 ./usr/include/libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.hpp -rw-r--r-- root/root 151864 2026-08-05 19:59 ./usr/include/libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp -rw-r--r-- root/root 1781 2026-08-05 19:59 ./usr/include/libmaus2/suffixsort/bwtb3m/BwtSelectSSA.hpp -rw-r--r-- root/root 2812 2026-08-05 19:59 ./usr/include/libmaus2/suffixsort/bwtb3m/GapArrayWrapper.hpp -rw-r--r-- root/root 3247 2026-08-05 19:59 ./usr/include/libmaus2/suffixsort/bwtb3m/InputTypesForward.hpp -rw-r--r-- root/root 7293 2026-08-05 19:59 ./usr/include/libmaus2/suffixsort/bwtb3m/MergeStrategyBaseBlock.hpp -rw-r--r-- root/root 9330 2026-08-05 19:59 ./usr/include/libmaus2/suffixsort/bwtb3m/MergeStrategyBlock.hpp -rw-r--r-- root/root 5807 2026-08-05 19:59 ./usr/include/libmaus2/suffixsort/bwtb3m/MergeStrategyConstruction.hpp -rw-r--r-- root/root 9035 2026-08-05 19:59 ./usr/include/libmaus2/suffixsort/bwtb3m/MergeStrategyMergeBlock.hpp -rw-r--r-- root/root 2635 2026-08-05 19:59 ./usr/include/libmaus2/suffixsort/bwtb3m/MergeStrategyMergeExternalBlock.hpp -rw-r--r-- root/root 5111 2026-08-05 19:59 ./usr/include/libmaus2/suffixsort/bwtb3m/MergeStrategyMergeGapRequest.hpp -rw-r--r-- root/root 2508 2026-08-05 19:59 ./usr/include/libmaus2/suffixsort/bwtb3m/MergeStrategyMergeGapRequestQueryObject.hpp -rw-r--r-- root/root 1144 2026-08-05 19:59 ./usr/include/libmaus2/suffixsort/bwtb3m/MergeStrategyMergeInput.hpp -rw-r--r-- root/root 2635 2026-08-05 19:59 ./usr/include/libmaus2/suffixsort/bwtb3m/MergeStrategyMergeInternalBlock.hpp -rw-r--r-- root/root 2686 2026-08-05 19:59 ./usr/include/libmaus2/suffixsort/bwtb3m/MergeStrategyMergeInternalSmallBlock.hpp -rw-r--r-- root/root 5048 2026-08-05 19:59 ./usr/include/libmaus2/suffixsort/bwtb3m/MergeTree.hpp -rw-r--r-- root/root 2272 2026-08-05 19:59 ./usr/include/libmaus2/suffixsort/bwtb3m/PreIsaAdapter.hpp -rw-r--r-- root/root 68900 2026-08-05 19:59 ./usr/include/libmaus2/suffixsort/divsufsort.hpp drwxr-xr-x root/root 0 2026-08-05 19:59 ./usr/include/libmaus2/suffixtree/ -rw-r--r-- root/root 11402 2026-08-05 19:59 ./usr/include/libmaus2/suffixtree/CompressedSuffixTree.hpp drwxr-xr-x root/root 0 2026-08-05 19:59 ./usr/include/libmaus2/sv/ -rw-r--r-- root/root 3862 2026-08-05 19:59 ./usr/include/libmaus2/sv/sv.hpp drwxr-xr-x root/root 0 2026-08-05 19:59 ./usr/include/libmaus2/timing/ -rw-r--r-- root/root 3511 2026-08-05 19:59 ./usr/include/libmaus2/timing/RealTimeClock.hpp drwxr-xr-x root/root 0 2026-08-05 19:59 ./usr/include/libmaus2/trie/ -rw-r--r-- root/root 2388 2026-08-05 19:59 ./usr/include/libmaus2/trie/SimpleTrie.hpp -rw-r--r-- root/root 20728 2026-08-05 19:59 ./usr/include/libmaus2/trie/TrieState.hpp drwxr-xr-x root/root 0 2026-08-05 19:59 ./usr/include/libmaus2/types/ -rw-r--r-- root/root 2113 2026-08-05 19:59 ./usr/include/libmaus2/types/types.hpp drwxr-xr-x root/root 0 2026-08-05 19:59 ./usr/include/libmaus2/uint/ -rw-r--r-- root/root 16140 2026-08-05 19:59 ./usr/include/libmaus2/uint/uint.hpp drwxr-xr-x root/root 0 2026-08-05 19:59 ./usr/include/libmaus2/util/ -rw-r--r-- root/root 1462 2026-08-05 19:59 ./usr/include/libmaus2/util/AlphaDigitTable.hpp -rw-r--r-- root/root 1442 2026-08-05 19:59 ./usr/include/libmaus2/util/AlphaTable.hpp -rw-r--r-- root/root 13628 2026-08-05 19:59 ./usr/include/libmaus2/util/ArgInfo.hpp -rw-r--r-- root/root 3515 2026-08-05 19:59 ./usr/include/libmaus2/util/ArgInfoParseBase.hpp -rw-r--r-- root/root 18753 2026-08-05 19:59 ./usr/include/libmaus2/util/ArgParser.hpp -rw-r--r-- root/root 5119 2026-08-05 19:59 ./usr/include/libmaus2/util/ArrayIterator.hpp -rw-r--r-- root/root 5035 2026-08-05 19:59 ./usr/include/libmaus2/util/AtomicArray.hpp -rw-r--r-- root/root 1277 2026-08-05 19:59 ./usr/include/libmaus2/util/AutoArrayCharBaseAllocator.hpp -rw-r--r-- root/root 1280 2026-08-05 19:59 ./usr/include/libmaus2/util/AutoArrayCharBaseTypeInfo.hpp -rw-r--r-- root/root 1292 2026-08-05 19:59 ./usr/include/libmaus2/util/AutoArrayUInt8TBaseAllocator.hpp -rw-r--r-- root/root 1289 2026-08-05 19:59 ./usr/include/libmaus2/util/AutoArrayUInt8TBaseTypeInfo.hpp -rw-r--r-- root/root 6259 2026-08-05 19:59 ./usr/include/libmaus2/util/Base64.hpp -rw-r--r-- root/root 2388 2026-08-05 19:59 ./usr/include/libmaus2/util/BitList.hpp -rw-r--r-- root/root 1492 2026-08-05 19:59 ./usr/include/libmaus2/util/BitsPerNum.hpp -rw-r--r-- root/root 3004 2026-08-05 19:59 ./usr/include/libmaus2/util/BorderArray.hpp -rw-r--r-- root/root 4513 2026-08-05 19:59 ./usr/include/libmaus2/util/CompactNumberArray.hpp -rw-r--r-- root/root 2838 2026-08-05 19:59 ./usr/include/libmaus2/util/Concat.hpp -rw-r--r-- root/root 3453 2026-08-05 19:59 ./usr/include/libmaus2/util/ConcatRequest.hpp -rw-r--r-- root/root 3034 2026-08-05 19:59 ./usr/include/libmaus2/util/ConsoleColor.hpp -rw-r--r-- root/root 2168 2026-08-05 19:59 ./usr/include/libmaus2/util/ContainerDescription.hpp -rw-r--r-- root/root 2557 2026-08-05 19:59 ./usr/include/libmaus2/util/ContainerDescriptionList.hpp -rw-r--r-- root/root 2315 2026-08-05 19:59 ./usr/include/libmaus2/util/ContainerElementFreeList.hpp -rw-r--r-- root/root 1609 2026-08-05 19:59 ./usr/include/libmaus2/util/ContainerGetObject.hpp -rw-r--r-- root/root 3105 2026-08-05 19:59 ./usr/include/libmaus2/util/CountGetObject.hpp -rw-r--r-- root/root 2807 2026-08-05 19:59 ./usr/include/libmaus2/util/CountPutIterator.hpp -rw-r--r-- root/root 1539 2026-08-05 19:59 ./usr/include/libmaus2/util/CountPutObject.hpp -rw-r--r-- root/root 1442 2026-08-05 19:59 ./usr/include/libmaus2/util/DigitTable.hpp -rw-r--r-- root/root 10219 2026-08-05 19:59 ./usr/include/libmaus2/util/DirectoryStructure.hpp -rw-r--r-- root/root 4500 2026-08-05 19:59 ./usr/include/libmaus2/util/DynamicLoading.hpp -rw-r--r-- root/root 1991 2026-08-05 19:59 ./usr/include/libmaus2/util/Enumerator.hpp -rw-r--r-- root/root 3024 2026-08-05 19:59 ./usr/include/libmaus2/util/FileEnumerator.hpp -rw-r--r-- root/root 4562 2026-08-05 19:59 ./usr/include/libmaus2/util/FileTempFileContainer.hpp -rw-r--r-- root/root 3859 2026-08-05 19:59 ./usr/include/libmaus2/util/FiniteSizeHeap.hpp -rw-r--r-- root/root 4348 2026-08-05 19:59 ./usr/include/libmaus2/util/FreeList.hpp -rw-r--r-- root/root 2606 2026-08-05 19:59 ./usr/include/libmaus2/util/GenericIntervalTree.hpp -rw-r--r-- root/root 2156 2026-08-05 19:59 ./usr/include/libmaus2/util/GenericSerialisation.hpp -rw-r--r-- root/root 1985 2026-08-05 19:59 ./usr/include/libmaus2/util/GetCObject.hpp -rw-r--r-- root/root 9133 2026-08-05 19:59 ./usr/include/libmaus2/util/GetFileSize.hpp -rw-r--r-- root/root 4858 2026-08-05 19:59 ./usr/include/libmaus2/util/GrowingFreeList.hpp -rw-r--r-- root/root 5748 2026-08-05 19:59 ./usr/include/libmaus2/util/Histogram.hpp -rw-r--r-- root/root 1906 2026-08-05 19:59 ./usr/include/libmaus2/util/HistogramSet.hpp -rw-r--r-- root/root 6884 2026-08-05 19:59 ./usr/include/libmaus2/util/ImpCompactNumberArray.hpp -rw-r--r-- root/root 3278 2026-08-05 19:59 ./usr/include/libmaus2/util/IncreasingList.hpp -rw-r--r-- root/root 1860 2026-08-05 19:59 ./usr/include/libmaus2/util/IntervalTree.hpp -rw-r--r-- root/root 9278 2026-08-05 19:59 ./usr/include/libmaus2/util/KMP.hpp -rw-r--r-- root/root 10383 2026-08-05 19:59 ./usr/include/libmaus2/util/LELoad.hpp -rw-r--r-- root/root 6846 2026-08-05 19:59 ./usr/include/libmaus2/util/LineAccessor.hpp -rw-r--r-- root/root 6822 2026-08-05 19:59 ./usr/include/libmaus2/util/LineBuffer.hpp -rw-r--r-- root/root 2176 2026-08-05 19:59 ./usr/include/libmaus2/util/LocalTempContainer.hpp -rw-r--r-- root/root 5672 2026-08-05 19:59 ./usr/include/libmaus2/util/LongestIncreasingSubsequence.hpp -rw-r--r-- root/root 2702 2026-08-05 19:59 ./usr/include/libmaus2/util/LongestIncreasingSubsequenceExtendedResult.hpp -rw-r--r-- root/root 2806 2026-08-05 19:59 ./usr/include/libmaus2/util/LookupIntervalTree.hpp -rw-r--r-- root/root 2781 2026-08-05 19:59 ./usr/include/libmaus2/util/MemTempFileContainer.hpp -rw-r--r-- root/root 1710 2026-08-05 19:59 ./usr/include/libmaus2/util/MemUsage.hpp -rw-r--r-- root/root 3026 2026-08-05 19:59 ./usr/include/libmaus2/util/MemoryStatistics.hpp -rw-r--r-- root/root 3978 2026-08-05 19:59 ./usr/include/libmaus2/util/MoveStack.hpp -rw-r--r-- root/root 1434 2026-08-05 19:59 ./usr/include/libmaus2/util/NotDigitOrTermTable.hpp -rw-r--r-- root/root 2582 2026-08-05 19:59 ./usr/include/libmaus2/util/NumberMapSerialisation.hpp -rw-r--r-- root/root 11122 2026-08-05 19:59 ./usr/include/libmaus2/util/NumberSerialisation.hpp -rw-r--r-- root/root 1714 2026-08-05 19:59 ./usr/include/libmaus2/util/NumberToString.hpp -rw-r--r-- root/root 1409 2026-08-05 19:59 ./usr/include/libmaus2/util/Object.hpp -rw-r--r-- root/root 4585 2026-08-05 19:59 ./usr/include/libmaus2/util/OctetString.hpp -rw-r--r-- root/root 1432 2026-08-05 19:59 ./usr/include/libmaus2/util/OffsetArray.hpp -rw-r--r-- root/root 1412 2026-08-05 19:59 ./usr/include/libmaus2/util/OutputFileNameTools.hpp -rw-r--r-- root/root 1120 2026-08-05 19:59 ./usr/include/libmaus2/util/PathTools.hpp -rw-r--r-- root/root 2817 2026-08-05 19:59 ./usr/include/libmaus2/util/PrefixSums.hpp -rw-r--r-- root/root 2280 2026-08-05 19:59 ./usr/include/libmaus2/util/PushBuffer.hpp -rw-r--r-- root/root 1374 2026-08-05 19:59 ./usr/include/libmaus2/util/PutObject.hpp -rw-r--r-- root/root 1402 2026-08-05 19:59 ./usr/include/libmaus2/util/PutObjectReverse.hpp -rw-r--r-- root/root 2371 2026-08-05 19:59 ./usr/include/libmaus2/util/Queue.hpp -rw-r--r-- root/root 1251 2026-08-05 19:59 ./usr/include/libmaus2/util/ReverseAdapter.hpp -rw-r--r-- root/root 1262 2026-08-05 19:59 ./usr/include/libmaus2/util/ReverseByteOrder.hpp -rw-r--r-- root/root 2500 2026-08-05 19:59 ./usr/include/libmaus2/util/SaturatingCounter.hpp -rw-r--r-- root/root 5493 2026-08-05 19:59 ./usr/include/libmaus2/util/SerialiseHelper.hpp -rw-r--r-- root/root 6322 2026-08-05 19:59 ./usr/include/libmaus2/util/SimpleBloomFilter.hpp -rw-r--r-- root/root 10691 2026-08-05 19:59 ./usr/include/libmaus2/util/SimpleCountingHash.hpp -rw-r--r-- root/root 20443 2026-08-05 19:59 ./usr/include/libmaus2/util/SimpleHashMap.hpp -rw-r--r-- root/root 2620 2026-08-05 19:59 ./usr/include/libmaus2/util/SimpleHashMapConstants.hpp -rw-r--r-- root/root 1150 2026-08-05 19:59 ./usr/include/libmaus2/util/SimpleHashMapDisplaceMaskFunction.hpp -rw-r--r-- root/root 1556 2026-08-05 19:59 ./usr/include/libmaus2/util/SimpleHashMapHashCompute.hpp -rw-r--r-- root/root 11769 2026-08-05 19:59 ./usr/include/libmaus2/util/SimpleHashMapInsDel.hpp -rw-r--r-- root/root 2013 2026-08-05 19:59 ./usr/include/libmaus2/util/SimpleHashMapKeyPrint.hpp -rw-r--r-- root/root 1128 2026-08-05 19:59 ./usr/include/libmaus2/util/SimpleHashMapNumberCast.hpp -rw-r--r-- root/root 9671 2026-08-05 19:59 ./usr/include/libmaus2/util/SimpleHashSet.hpp -rw-r--r-- root/root 9506 2026-08-05 19:59 ./usr/include/libmaus2/util/SimpleHashSetInsDel.hpp -rw-r--r-- root/root 3010 2026-08-05 19:59 ./usr/include/libmaus2/util/SimpleQueue.hpp -rw-r--r-- root/root 17944 2026-08-05 19:59 ./usr/include/libmaus2/util/SplayTree.hpp -rw-r--r-- root/root 1994 2026-08-05 19:59 ./usr/include/libmaus2/util/StreamGetObject.hpp -rw-r--r-- root/root 1105 2026-08-05 19:59 ./usr/include/libmaus2/util/StringAllocTypes.hpp -rw-r--r-- root/root 2667 2026-08-05 19:59 ./usr/include/libmaus2/util/StringMapCompare.hpp -rw-r--r-- root/root 2378 2026-08-05 19:59 ./usr/include/libmaus2/util/StringSerialisation.hpp -rw-r--r-- root/root 4750 2026-08-05 19:59 ./usr/include/libmaus2/util/SuccinctBorderArray.hpp -rw-r--r-- root/root 6635 2026-08-05 19:59 ./usr/include/libmaus2/util/TabEntry.hpp -rw-r--r-- root/root 1342 2026-08-05 19:59 ./usr/include/libmaus2/util/TempFileContainer.hpp -rw-r--r-- root/root 1877 2026-08-05 19:59 ./usr/include/libmaus2/util/TempFileNameGenerator.hpp -rw-r--r-- root/root 1866 2026-08-05 19:59 ./usr/include/libmaus2/util/TempFileNameGeneratorState.hpp -rw-r--r-- root/root 10111 2026-08-05 19:59 ./usr/include/libmaus2/util/TempFileRemovalContainer.hpp -rw-r--r-- root/root 1033 2026-08-05 19:59 ./usr/include/libmaus2/util/Terminal.hpp -rw-r--r-- root/root 2491 2026-08-05 19:59 ./usr/include/libmaus2/util/ToUpperTable.hpp -rw-r--r-- root/root 1383 2026-08-05 19:59 ./usr/include/libmaus2/util/U.hpp -rw-r--r-- root/root 1377 2026-08-05 19:59 ./usr/include/libmaus2/util/UnitNum.hpp -rw-r--r-- root/root 1157 2026-08-05 19:59 ./usr/include/libmaus2/util/UnsignedCharVariant.hpp -rw-r--r-- root/root 4074 2026-08-05 19:59 ./usr/include/libmaus2/util/UnsignedIntegerIndexIterator.hpp -rw-r--r-- root/root 2264 2026-08-05 19:59 ./usr/include/libmaus2/util/Utf8BlockIndex.hpp -rw-r--r-- root/root 1301 2026-08-05 19:59 ./usr/include/libmaus2/util/Utf8BlockIndexDecoder.hpp -rw-r--r-- root/root 2493 2026-08-05 19:59 ./usr/include/libmaus2/util/Utf8DecoderBuffer.hpp -rw-r--r-- root/root 1504 2026-08-05 19:59 ./usr/include/libmaus2/util/Utf8DecoderWrapper.hpp -rw-r--r-- root/root 6196 2026-08-05 19:59 ./usr/include/libmaus2/util/Utf8String.hpp -rw-r--r-- root/root 1515 2026-08-05 19:59 ./usr/include/libmaus2/util/Utf8StringPairAdapter.hpp -rw-r--r-- root/root 1339 2026-08-05 19:59 ./usr/include/libmaus2/util/VarBitList.hpp -rw-r--r-- root/root 2655 2026-08-05 19:59 ./usr/include/libmaus2/util/VarList.hpp -rw-r--r-- root/root 1250 2026-08-05 19:59 ./usr/include/libmaus2/util/WriteableString.hpp -rw-r--r-- root/root 1596 2026-08-05 19:59 ./usr/include/libmaus2/util/atomic_shared_ptr.hpp -rw-r--r-- root/root 15421 2026-08-05 19:59 ./usr/include/libmaus2/util/iterator.hpp -rw-r--r-- root/root 1422 2026-08-05 19:59 ./usr/include/libmaus2/util/nstat.hpp -rw-r--r-- root/root 3579 2026-08-05 19:59 ./usr/include/libmaus2/util/stringFunctions.hpp -rw-r--r-- root/root 1253 2026-08-05 19:59 ./usr/include/libmaus2/util/unordered_map.hpp -rw-r--r-- root/root 1234 2026-08-05 19:59 ./usr/include/libmaus2/util/unordered_set.hpp -rw-r--r-- root/root 11917 2026-08-05 19:59 ./usr/include/libmaus2/util/utf8.hpp drwxr-xr-x root/root 0 2026-08-05 19:59 ./usr/include/libmaus2/vcf/ -rw-r--r-- root/root 10895 2026-08-05 19:59 ./usr/include/libmaus2/vcf/TabixIndex.hpp -rw-r--r-- root/root 37579 2026-08-05 19:59 ./usr/include/libmaus2/vcf/VCFParser.hpp -rw-r--r-- root/root 5476 2026-08-05 19:59 ./usr/include/libmaus2/vcf/VCFSortEntry.hpp -rw-r--r-- root/root 5233 2026-08-05 19:59 ./usr/include/libmaus2/vcf/VCFSorter.hpp drwxr-xr-x root/root 0 2026-08-05 19:59 ./usr/include/libmaus2/vep/ -rw-r--r-- root/root 2059 2026-08-05 19:59 ./usr/include/libmaus2/vep/VEPCoordinate.hpp -rw-r--r-- root/root 5382 2026-08-05 19:59 ./usr/include/libmaus2/vep/VEPParser.hpp drwxr-xr-x root/root 0 2026-08-05 19:59 ./usr/include/libmaus2/wavelet/ -rw-r--r-- root/root 8971 2026-08-05 19:59 ./usr/include/libmaus2/wavelet/DynamicHuffmanWaveletTree.hpp -rw-r--r-- root/root 10869 2026-08-05 19:59 ./usr/include/libmaus2/wavelet/DynamicWaveletTree.hpp -rw-r--r-- root/root 5066 2026-08-05 19:59 ./usr/include/libmaus2/wavelet/ExternalWaveletGenerator.hpp -rw-r--r-- root/root 38588 2026-08-05 19:59 ./usr/include/libmaus2/wavelet/HuffmanWaveletTree.hpp -rw-r--r-- root/root 36431 2026-08-05 19:59 ./usr/include/libmaus2/wavelet/ImpCompactHuffmanWaveletTree.hpp -rw-r--r-- root/root 4160 2026-08-05 19:59 ./usr/include/libmaus2/wavelet/ImpExternalWaveletGenerator.hpp -rw-r--r-- root/root 7563 2026-08-05 19:59 ./usr/include/libmaus2/wavelet/ImpExternalWaveletGeneratorCompactHuffman.hpp -rw-r--r-- root/root 12948 2026-08-05 19:59 ./usr/include/libmaus2/wavelet/ImpExternalWaveletGeneratorCompactHuffmanParallel.hpp -rw-r--r-- root/root 8266 2026-08-05 19:59 ./usr/include/libmaus2/wavelet/ImpExternalWaveletGeneratorHuffman.hpp -rw-r--r-- root/root 12275 2026-08-05 19:59 ./usr/include/libmaus2/wavelet/ImpExternalWaveletGeneratorHuffmanParallel.hpp -rw-r--r-- root/root 36169 2026-08-05 19:59 ./usr/include/libmaus2/wavelet/ImpHuffmanWaveletTree.hpp -rw-r--r-- root/root 5176 2026-08-05 19:59 ./usr/include/libmaus2/wavelet/ImpWaveletTree.hpp -rw-r--r-- root/root 52043 2026-08-05 19:59 ./usr/include/libmaus2/wavelet/RlToHwtBase.hpp -rw-r--r-- root/root 4858 2026-08-05 19:59 ./usr/include/libmaus2/wavelet/RlToHwtTermRequest.hpp -rw-r--r-- root/root 77358 2026-08-05 19:59 ./usr/include/libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp -rw-r--r-- root/root 74356 2026-08-05 19:59 ./usr/include/libmaus2/wavelet/Utf8ToImpHuffmanWaveletTree.hpp -rw-r--r-- root/root 89498 2026-08-05 19:59 ./usr/include/libmaus2/wavelet/WaveletTree.hpp -rw-r--r-- root/root 1251 2026-08-05 19:59 ./usr/include/libmaus2/wavelet/toWaveletTreeBits.hpp drwxr-xr-x root/root 0 2026-08-05 19:59 ./usr/lib/ drwxr-xr-x root/root 0 2026-08-05 19:59 ./usr/lib/powerpc64le-linux-gnu/ -rw-r--r-- root/root 68441980 2026-08-05 19:59 ./usr/lib/powerpc64le-linux-gnu/libmaus2.a lrwxrwxrwx root/root 0 2026-08-05 19:59 ./usr/lib/powerpc64le-linux-gnu/libmaus2.so -> libmaus2.so.2.0.813 -rw-r--r-- root/root 16772 2026-08-05 19:59 ./usr/lib/powerpc64le-linux-gnu/libmaus2_arch.a lrwxrwxrwx root/root 0 2026-08-05 19:59 ./usr/lib/powerpc64le-linux-gnu/libmaus2_arch.so -> libmaus2_arch.so.2.0.813 -rw-r--r-- root/root 9748 2026-08-05 19:59 ./usr/lib/powerpc64le-linux-gnu/libmaus2_autoarray.a lrwxrwxrwx root/root 0 2026-08-05 19:59 ./usr/lib/powerpc64le-linux-gnu/libmaus2_autoarray.so -> libmaus2_autoarray.so.2.0.813 -rw-r--r-- root/root 3890 2026-08-05 19:59 ./usr/lib/powerpc64le-linux-gnu/libmaus2_demangle.a lrwxrwxrwx root/root 0 2026-08-05 19:59 ./usr/lib/powerpc64le-linux-gnu/libmaus2_demangle.so -> libmaus2_demangle.so.2.0.813 -rw-r--r-- root/root 42724 2026-08-05 19:59 ./usr/lib/powerpc64le-linux-gnu/libmaus2_exception.a lrwxrwxrwx root/root 0 2026-08-05 19:59 ./usr/lib/powerpc64le-linux-gnu/libmaus2_exception.so -> libmaus2_exception.so.2.0.813 -rw-r--r-- root/root 58298 2026-08-05 19:59 ./usr/lib/powerpc64le-linux-gnu/libmaus2_parallel.a lrwxrwxrwx root/root 0 2026-08-05 19:59 ./usr/lib/powerpc64le-linux-gnu/libmaus2_parallel.so -> libmaus2_parallel.so.2.0.813 -rw-r--r-- root/root 63012 2026-08-05 19:59 ./usr/lib/powerpc64le-linux-gnu/libmaus2_posix.a lrwxrwxrwx root/root 0 2026-08-05 19:59 ./usr/lib/powerpc64le-linux-gnu/libmaus2_posix.so -> libmaus2_posix.so.2.0.813 lrwxrwxrwx root/root 0 2026-08-05 19:59 ./usr/lib/powerpc64le-linux-gnu/libmaus2_simd_align_128.so -> libmaus2_simd_align_128.so.2.0.813 -rw-r--r-- root/root 92270 2026-08-05 19:59 ./usr/lib/powerpc64le-linux-gnu/libmaus2_simd_align_256.a lrwxrwxrwx root/root 0 2026-08-05 19:59 ./usr/lib/powerpc64le-linux-gnu/libmaus2_simd_align_256.so -> libmaus2_simd_align_256.so.2.0.813 -rw-r--r-- root/root 76292 2026-08-05 19:59 ./usr/lib/powerpc64le-linux-gnu/libmaus2_stacktrace.a lrwxrwxrwx root/root 0 2026-08-05 19:59 ./usr/lib/powerpc64le-linux-gnu/libmaus2_stacktrace.so -> libmaus2_stacktrace.so.2.0.813 drwxr-xr-x root/root 0 2026-08-05 19:59 ./usr/lib/powerpc64le-linux-gnu/pkgconfig/ -rw-r--r-- root/root 440 2026-08-05 19:59 ./usr/lib/powerpc64le-linux-gnu/pkgconfig/libmaus2.pc drwxr-xr-x root/root 0 2026-08-05 19:59 ./usr/share/ drwxr-xr-x root/root 0 2026-08-05 19:59 ./usr/share/doc/ drwxr-xr-x root/root 0 2026-08-05 19:59 ./usr/share/doc/libmaus2-dev/ -rw-r--r-- root/root 1123 2026-08-05 19:59 ./usr/share/doc/libmaus2-dev/changelog.Debian.gz -rw-r--r-- root/root 50650 2022-12-10 21:04 ./usr/share/doc/libmaus2-dev/changelog.gz -rw-r--r-- root/root 8044 2026-08-05 19:59 ./usr/share/doc/libmaus2-dev/copyright lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:amd64 Filtered Build-Depends: lintian:amd64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/build/reproducible-path/resolver-VqtiNL/apt_archive/sbuild-build-depends-lintian-dummy.deb'. Ign:1 copy:/build/reproducible-path/resolver-VqtiNL/apt_archive ./ InRelease Get:2 copy:/build/reproducible-path/resolver-VqtiNL/apt_archive ./ Release [615 B] Ign:3 copy:/build/reproducible-path/resolver-VqtiNL/apt_archive ./ Release.gpg Get:4 copy:/build/reproducible-path/resolver-VqtiNL/apt_archive ./ Sources [1371 B] Get:5 copy:/build/reproducible-path/resolver-VqtiNL/apt_archive ./ Packages [1454 B] Fetched 3440 B in 0s (0 B/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Execute external solver... The following additional packages will be installed: appstream ca-certificates diffstat distro-info-data iso-codes libaliased-perl libappstream5 libapt-pkg-perl libb-hooks-endofscope-perl libb-hooks-op-check-perl libberkeleydb-perl libbrotli1 libcapture-tiny-perl libcgi-pm-perl libclass-data-inheritable-perl libclass-inspector-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libcom-err2 libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libcurl4-gnutls libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdata-validate-ip-perl libdata-validate-uri-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdistro-info-perl libdynaloader-functions-perl libemail-address-xs-perl libencode-locale-perl libexception-class-perl libfile-basedir-perl libfile-find-rule-perl libfile-libmagic-perl libfile-listing-perl libfile-sharedir-perl libfont-ttf-perl libfyaml0 libglib2.0-0t64 libgssapi-krb5-2 libhtml-form-perl libhtml-html5-entities-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tokeparser-simple-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libimport-into-perl libio-html-perl libio-interactive-perl libio-socket-ssl-perl libio-string-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblist-compare-perl liblist-someutils-perl liblist-utilsby-perl liblwp-mediatypes-perl liblwp-protocol-https-perl liblz1 liblzo2-2 libmarkdown2 libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnet-http-perl libnet-ipv6addr-perl libnet-netmask-perl libnet-ssleay-perl libnetaddr-ip-perl libnghttp2-14 libnghttp3-9 libngtcp2-16 libngtcp2-crypto-gnutls8 libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl libproc2-1 libpsl5t64 libregexp-wildcards-perl librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libssh2-1t64 libstemmer0d libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libsyntax-keyword-try-perl libterm-readkey-perl libtext-charwidth-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-wrapi18n-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libwww-mechanize-perl libwww-perl libwww-robotrules-perl libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxmlb2 libxs-parse-keyword-perl libyaml-0-2 libyaml-libyaml-perl lintian lzop netbase openssl patchutils perl-openssl-defaults plzip procps shared-mime-info t1utils ucf unzip Suggested packages: apt-config-icons isoquery libxml-parser-perl low-memory-monitor krb5-doc krb5-user libdata-dump-perl libcrypt-ssleay-perl libscalar-number-perl libbareword-filehandles-perl libindirect-perl libmultidimensional-perl libbusiness-isbn-perl libmime-base32-perl libregexp-ipv6-perl libauthen-ntlm-perl binutils-multiarch libtext-template-perl python3 zip Recommended packages: libcgi-fast-perl libglib2.0-data xdg-user-dirs libhtml-format-perl libio-compress-brotli-perl krb5-locales liblist-someutils-xs-perl libfreezethaw-perl libmath-base85-perl libsocket6-perl libpackage-stash-xs-perl publicsuffix libxstring-perl libdata-dump-perl libhttp-daemon-perl libmailtools-perl libxml-sax-expat-perl psmisc linux-sysctl-defaults The following NEW packages will be installed: appstream ca-certificates diffstat distro-info-data iso-codes libaliased-perl libappstream5 libapt-pkg-perl libb-hooks-endofscope-perl libb-hooks-op-check-perl libberkeleydb-perl libbrotli1 libcapture-tiny-perl libcgi-pm-perl libclass-data-inheritable-perl libclass-inspector-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libcom-err2 libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libcurl4-gnutls libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdata-validate-ip-perl libdata-validate-uri-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdistro-info-perl libdynaloader-functions-perl libemail-address-xs-perl libencode-locale-perl libexception-class-perl libfile-basedir-perl libfile-find-rule-perl libfile-libmagic-perl libfile-listing-perl libfile-sharedir-perl libfont-ttf-perl libfyaml0 libglib2.0-0t64 libgssapi-krb5-2 libhtml-form-perl libhtml-html5-entities-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tokeparser-simple-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libimport-into-perl libio-html-perl libio-interactive-perl libio-socket-ssl-perl libio-string-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblist-compare-perl liblist-someutils-perl liblist-utilsby-perl liblwp-mediatypes-perl liblwp-protocol-https-perl liblz1 liblzo2-2 libmarkdown2 libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnet-http-perl libnet-ipv6addr-perl libnet-netmask-perl libnet-ssleay-perl libnetaddr-ip-perl libnghttp2-14 libnghttp3-9 libngtcp2-16 libngtcp2-crypto-gnutls8 libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl libproc2-1 libpsl5t64 libregexp-wildcards-perl librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libssh2-1t64 libstemmer0d libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libsyntax-keyword-try-perl libterm-readkey-perl libtext-charwidth-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-wrapi18n-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libwww-mechanize-perl libwww-perl libwww-robotrules-perl libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxmlb2 libxs-parse-keyword-perl libyaml-0-2 libyaml-libyaml-perl lintian lzop netbase openssl patchutils perl-openssl-defaults plzip procps sbuild-build-depends-lintian-dummy:ppc64el shared-mime-info t1utils ucf unzip 0 upgraded, 159 newly installed, 0 to remove and 0 not upgraded. Need to get 19.1 MB of archives. After this operation, 79.1 MB of additional disk space will be used. Get:1 copy:/build/reproducible-path/resolver-VqtiNL/apt_archive ./ sbuild-build-depends-lintian-dummy 0.invalid.0 [836 B] Get:2 http://localhost:3142/debian unstable/main amd64 netbase all 6.6 [10.3 kB] Get:3 http://localhost:3142/debian unstable/main amd64 libproc2-1 amd64 2:4.0.7-1 [73.0 kB] Get:4 http://localhost:3142/debian unstable/main amd64 procps amd64 2:4.0.7-1 [989 kB] Get:5 http://localhost:3142/debian unstable/main amd64 openssl amd64 3.6.4-1 [1546 kB] Get:6 http://localhost:3142/debian unstable/main amd64 ca-certificates all 20260816 [134 kB] Get:7 http://localhost:3142/debian unstable/main amd64 libtext-charwidth-perl amd64 0.04-12+b1 [9344 B] Get:8 http://localhost:3142/debian unstable/main amd64 libtext-wrapi18n-perl all 0.06-11 [7788 B] Get:9 http://localhost:3142/debian unstable/main amd64 ucf all 3.0056 [47.1 kB] Get:10 http://localhost:3142/debian unstable/main amd64 libglib2.0-0t64 amd64 2.89.4-2 [1618 kB] Get:11 http://localhost:3142/debian unstable/main amd64 shared-mime-info amd64 2.4-5+b3 [758 kB] Get:12 http://localhost:3142/debian unstable/main amd64 libnghttp3-9 amd64 1.17.0-1 [68.1 kB] Get:13 http://localhost:3142/debian unstable/main amd64 libngtcp2-16 amd64 1.24.0-1 [145 kB] Get:14 http://localhost:3142/debian unstable/main amd64 libbrotli1 amd64 1.2.0-4+b1 [312 kB] Get:15 http://localhost:3142/debian unstable/main amd64 libkrb5support0 amd64 1.22.1-3 [31.1 kB] Get:16 http://localhost:3142/debian unstable/main amd64 libcom-err2 amd64 1.47.4-1+b1 [19.5 kB] Get:17 http://localhost:3142/debian unstable/main amd64 libk5crypto3 amd64 1.22.1-3 [79.0 kB] Get:18 http://localhost:3142/debian unstable/main amd64 libkeyutils1 amd64 1.6.3-6+b2 [9348 B] Get:19 http://localhost:3142/debian unstable/main amd64 libkrb5-3 amd64 1.22.1-3 [335 kB] Get:20 http://localhost:3142/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.22.1-3 [137 kB] Get:21 http://localhost:3142/debian unstable/main amd64 libnghttp2-14 amd64 1.70.0-1 [92.7 kB] Get:22 http://localhost:3142/debian unstable/main amd64 libngtcp2-crypto-gnutls8 amd64 1.24.0-1 [23.9 kB] Get:23 http://localhost:3142/debian unstable/main amd64 libpsl5t64 amd64 0.23.3-1 [61.7 kB] Get:24 http://localhost:3142/debian unstable/main amd64 libssh2-1t64 amd64 1.11.1-6 [253 kB] Get:25 http://localhost:3142/debian unstable/main amd64 libcurl4-gnutls amd64 8.22.0-1 [457 kB] Get:26 http://localhost:3142/debian unstable/main amd64 libfyaml0 amd64 0.9.4-1 [312 kB] Get:27 http://localhost:3142/debian unstable/main amd64 libstemmer0d amd64 3.1.1-1 [138 kB] Get:28 http://localhost:3142/debian unstable/main amd64 libxmlb2 amd64 0.3.29-1 [63.8 kB] Get:29 http://localhost:3142/debian unstable/main amd64 libappstream5 amd64 1.1.6-1 [253 kB] Get:30 http://localhost:3142/debian unstable/main amd64 appstream amd64 1.1.6-1 [627 kB] Get:31 http://localhost:3142/debian unstable/main amd64 diffstat amd64 1.69-1 [34.9 kB] Get:32 http://localhost:3142/debian unstable/main amd64 distro-info-data all 2026.08.20-1 [6292 B] Get:33 http://localhost:3142/debian unstable/main amd64 iso-codes all 4.20.1-1 [3319 kB] Get:34 http://localhost:3142/debian unstable/main amd64 libaliased-perl all 0.34-3 [13.5 kB] Get:35 http://localhost:3142/debian unstable/main amd64 libapt-pkg-perl amd64 0.1.43+b1 [68.3 kB] Get:36 http://localhost:3142/debian unstable/main amd64 libb-hooks-op-check-perl amd64 0.22-3+b5 [10.6 kB] Get:37 http://localhost:3142/debian unstable/main amd64 libdynaloader-functions-perl all 0.004-2 [12.2 kB] Get:38 http://localhost:3142/debian unstable/main amd64 libdevel-callchecker-perl amd64 0.009-3+b1 [15.7 kB] Get:39 http://localhost:3142/debian unstable/main amd64 libparams-classify-perl amd64 0.015-2+b6 [22.5 kB] Get:40 http://localhost:3142/debian unstable/main amd64 libmodule-runtime-perl all 0.018-1 [17.8 kB] Get:41 http://localhost:3142/debian unstable/main amd64 libtry-tiny-perl all 0.32-1 [22.9 kB] Get:42 http://localhost:3142/debian unstable/main amd64 libmodule-implementation-perl all 0.09-2 [12.6 kB] Get:43 http://localhost:3142/debian unstable/main amd64 libsub-exporter-progressive-perl all 0.001013-3 [7496 B] Get:44 http://localhost:3142/debian unstable/main amd64 libvariable-magic-perl amd64 0.64-1+b2 [45.1 kB] Get:45 http://localhost:3142/debian unstable/main amd64 libb-hooks-endofscope-perl all 0.28-2 [17.6 kB] Get:46 http://localhost:3142/debian unstable/main amd64 libberkeleydb-perl amd64 0.66-2+b2 [122 kB] Get:47 http://localhost:3142/debian unstable/main amd64 libcapture-tiny-perl all 0.50-1 [24.6 kB] Get:48 http://localhost:3142/debian unstable/main amd64 libhtml-tagset-perl all 3.24-1 [14.7 kB] Get:49 http://localhost:3142/debian unstable/main amd64 liburi-perl all 5.36-1 [114 kB] Get:50 http://localhost:3142/debian unstable/main amd64 libhtml-parser-perl amd64 3.83-2+b1 [99.1 kB] Get:51 http://localhost:3142/debian unstable/main amd64 libcgi-pm-perl all 4.72-1 [217 kB] Get:52 http://localhost:3142/debian unstable/main amd64 libclass-data-inheritable-perl all 0.10-1 [8632 B] Get:53 http://localhost:3142/debian unstable/main amd64 libclass-inspector-perl all 1.36-3 [17.5 kB] Get:54 http://localhost:3142/debian unstable/main amd64 libclass-method-modifiers-perl all 2.15-1 [18.0 kB] Get:55 http://localhost:3142/debian unstable/main amd64 libclass-xsaccessor-perl amd64 1.19-4+b7 [36.7 kB] Get:56 http://localhost:3142/debian unstable/main amd64 libclone-perl amd64 0.50-1+b1 [21.7 kB] Get:57 http://localhost:3142/debian unstable/main amd64 libconfig-tiny-perl all 2.30-1 [18.9 kB] Get:58 http://localhost:3142/debian unstable/main amd64 libparams-util-perl amd64 1.102-3+b2 [24.7 kB] Get:59 http://localhost:3142/debian unstable/main amd64 libsub-install-perl all 0.929-1 [10.5 kB] Get:60 http://localhost:3142/debian unstable/main amd64 libdata-optlist-perl all 0.114-1 [10.6 kB] Get:61 http://localhost:3142/debian unstable/main amd64 libsub-exporter-perl all 0.990-1 [50.6 kB] Get:62 http://localhost:3142/debian unstable/main amd64 libconst-fast-perl all 0.014-2 [8792 B] Get:63 http://localhost:3142/debian unstable/main amd64 libcpanel-json-xs-perl amd64 4.42-1+b1 [134 kB] Get:64 http://localhost:3142/debian unstable/main amd64 libdevel-stacktrace-perl all 2.0500-1 [26.4 kB] Get:65 http://localhost:3142/debian unstable/main amd64 libexception-class-perl all 1.45-1 [34.6 kB] Get:66 http://localhost:3142/debian unstable/main amd64 libiterator-perl all 0.03+ds1-2 [18.8 kB] Get:67 http://localhost:3142/debian unstable/main amd64 libiterator-util-perl all 0.02+ds1-2 [14.0 kB] Get:68 http://localhost:3142/debian unstable/main amd64 libdata-dpath-perl all 0.60-1 [41.8 kB] Get:69 http://localhost:3142/debian unstable/main amd64 libdata-messagepack-perl amd64 1.02-3+b1 [32.1 kB] Get:70 http://localhost:3142/debian unstable/main amd64 libnet-domain-tld-perl all 1.75-4 [31.5 kB] Get:71 http://localhost:3142/debian unstable/main amd64 libdata-validate-domain-perl all 0.15-1 [11.9 kB] Get:72 http://localhost:3142/debian unstable/main amd64 libnet-ipv6addr-perl all 1.02-1 [21.7 kB] Get:73 http://localhost:3142/debian unstable/main amd64 libnet-netmask-perl all 2.0003-1 [28.5 kB] Get:74 http://localhost:3142/debian unstable/main amd64 libnetaddr-ip-perl amd64 4.079+dfsg-2+b6 [98.3 kB] Get:75 http://localhost:3142/debian unstable/main amd64 libdata-validate-ip-perl all 0.31-1 [20.6 kB] Get:76 http://localhost:3142/debian unstable/main amd64 libdata-validate-uri-perl all 0.07-3 [11.0 kB] Get:77 http://localhost:3142/debian unstable/main amd64 libdevel-size-perl amd64 0.87-1+b1 [24.1 kB] Get:78 http://localhost:3142/debian unstable/main amd64 libdistro-info-perl all 1.17 [5192 B] Get:79 http://localhost:3142/debian unstable/main amd64 libemail-address-xs-perl amd64 1.05-1+b5 [29.5 kB] Get:80 http://localhost:3142/debian unstable/main amd64 libencode-locale-perl all 1.05-3 [12.9 kB] Get:81 http://localhost:3142/debian unstable/main amd64 libipc-system-simple-perl all 1.30-2 [26.8 kB] Get:82 http://localhost:3142/debian unstable/main amd64 libfile-basedir-perl all 0.09-2 [15.1 kB] Get:83 http://localhost:3142/debian unstable/main amd64 libnumber-compare-perl all 0.03-3 [6332 B] Get:84 http://localhost:3142/debian unstable/main amd64 libtext-glob-perl all 0.11-3 [7676 B] Get:85 http://localhost:3142/debian unstable/main amd64 libfile-find-rule-perl all 0.35-1 [25.9 kB] Get:86 http://localhost:3142/debian unstable/main amd64 libfile-libmagic-perl amd64 1.23-2+b3 [31.3 kB] Get:87 http://localhost:3142/debian unstable/main amd64 libtimedate-perl all 2.3500-1 [64.2 kB] Get:88 http://localhost:3142/debian unstable/main amd64 libhttp-date-perl all 6.08-1 [12.1 kB] Get:89 http://localhost:3142/debian unstable/main amd64 libfile-listing-perl all 6.16-1 [12.4 kB] Get:90 http://localhost:3142/debian unstable/main amd64 libfile-sharedir-perl all 1.118-3 [16.0 kB] Get:91 http://localhost:3142/debian unstable/main amd64 libio-string-perl all 1.08-4 [12.1 kB] Get:92 http://localhost:3142/debian unstable/main amd64 libfont-ttf-perl all 1.06-2 [318 kB] Get:93 http://localhost:3142/debian unstable/main amd64 libio-html-perl all 1.004-3 [16.2 kB] Get:94 http://localhost:3142/debian unstable/main amd64 liblwp-mediatypes-perl all 6.04-2 [20.2 kB] Get:95 http://localhost:3142/debian unstable/main amd64 libhttp-message-perl all 7.04-1 [80.6 kB] Get:96 http://localhost:3142/debian unstable/main amd64 libhtml-form-perl all 6.13-1 [32.6 kB] Get:97 http://localhost:3142/debian unstable/main amd64 libhtml-html5-entities-perl all 0.004-3 [21.0 kB] Get:98 http://localhost:3142/debian unstable/main amd64 libhtml-tree-perl all 5.07-3 [211 kB] Get:99 http://localhost:3142/debian unstable/main amd64 libhttp-cookies-perl all 6.12-2 [19.2 kB] Get:100 http://localhost:3142/debian unstable/main amd64 libhttp-negotiate-perl all 6.01-2 [13.1 kB] Get:101 http://localhost:3142/debian unstable/main amd64 perl-openssl-defaults amd64 7+b2 [6724 B] Get:102 http://localhost:3142/debian unstable/main amd64 libnet-ssleay-perl amd64 1.96-2 [335 kB] Get:103 http://localhost:3142/debian unstable/main amd64 libio-socket-ssl-perl all 2.099-1 [229 kB] Get:104 http://localhost:3142/debian unstable/main amd64 libnet-http-perl all 6.24-1 [23.2 kB] Get:105 http://localhost:3142/debian unstable/main amd64 liblwp-protocol-https-perl all 6.15-1 [10.7 kB] Get:106 http://localhost:3142/debian unstable/main amd64 libwww-robotrules-perl all 6.03-1 [15.8 kB] Get:107 http://localhost:3142/debian unstable/main amd64 libwww-perl all 6.83-1 [186 kB] Get:108 http://localhost:3142/debian unstable/main amd64 libhtml-tokeparser-simple-perl all 3.16-4 [39.1 kB] Get:109 http://localhost:3142/debian unstable/main amd64 libimport-into-perl all 1.002005-2 [11.3 kB] Get:110 http://localhost:3142/debian unstable/main amd64 libio-interactive-perl all 1.027-1 [11.8 kB] Get:111 http://localhost:3142/debian unstable/main amd64 libipc-run3-perl all 0.049-1 [31.5 kB] Get:112 http://localhost:3142/debian unstable/main amd64 libjson-maybexs-perl all 1.004008-1 [12.9 kB] Get:113 http://localhost:3142/debian unstable/main amd64 liblist-compare-perl all 0.55-2 [65.7 kB] Get:114 http://localhost:3142/debian unstable/main amd64 liblist-someutils-perl all 0.59-1 [37.1 kB] Get:115 http://localhost:3142/debian unstable/main amd64 liblist-utilsby-perl all 0.12-2 [15.5 kB] Get:116 http://localhost:3142/debian unstable/main amd64 liblz1 amd64 1.16-2 [40.4 kB] Get:117 http://localhost:3142/debian unstable/main amd64 liblzo2-2 amd64 2.10-3+b2 [57.4 kB] Get:118 http://localhost:3142/debian unstable/main amd64 libmarkdown2 amd64 2.2.7-2.1+b2 [36.5 kB] Get:119 http://localhost:3142/debian unstable/main amd64 libmldbm-perl all 2.05-4 [16.8 kB] Get:120 http://localhost:3142/debian unstable/main amd64 librole-tiny-perl all 2.002005-1 [19.5 kB] Get:121 http://localhost:3142/debian unstable/main amd64 libsub-quote-perl all 2.006009-1 [21.3 kB] Get:122 http://localhost:3142/debian unstable/main amd64 libmoo-perl all 2.005005-1 [58.0 kB] Get:123 http://localhost:3142/debian unstable/main amd64 libstrictures-perl all 2.000006-1 [18.6 kB] Get:124 http://localhost:3142/debian unstable/main amd64 libmoox-aliases-perl all 0.001006-3 [6996 B] Get:125 http://localhost:3142/debian unstable/main amd64 libmouse-perl amd64 2.6.2-1+b1 [144 kB] Get:126 http://localhost:3142/debian unstable/main amd64 libpackage-stash-perl all 0.40-1 [22.0 kB] Get:127 http://localhost:3142/debian unstable/main amd64 libsub-identify-perl amd64 0.14-4+b1 [11.3 kB] Get:128 http://localhost:3142/debian unstable/main amd64 libsub-name-perl amd64 0.28-1+b3 [12.6 kB] Get:129 http://localhost:3142/debian unstable/main amd64 libnamespace-clean-perl all 0.27-2 [17.8 kB] Get:130 http://localhost:3142/debian unstable/main amd64 libpath-tiny-perl all 0.150-1 [56.4 kB] Get:131 http://localhost:3142/debian unstable/main amd64 libperlio-gzip-perl amd64 0.20-1+b5 [17.6 kB] Get:132 http://localhost:3142/debian unstable/main amd64 libperlio-utf8-strict-perl amd64 0.010-1+b4 [11.4 kB] Get:133 http://localhost:3142/debian unstable/main amd64 libproc-processtable-perl amd64 0.637-1+b3 [41.9 kB] Get:134 http://localhost:3142/debian unstable/main amd64 libregexp-wildcards-perl all 1.05-3 [14.1 kB] Get:135 http://localhost:3142/debian unstable/main amd64 libsereal-decoder-perl amd64 5.006+ds-1+b1 [101 kB] Get:136 http://localhost:3142/debian unstable/main amd64 libsereal-encoder-perl amd64 5.006+ds-1+b1 [104 kB] Get:137 http://localhost:3142/debian unstable/main amd64 libsort-versions-perl all 1.62-3 [8928 B] Get:138 http://localhost:3142/debian unstable/main amd64 libxs-parse-keyword-perl amd64 0.49-1+b1 [66.2 kB] Get:139 http://localhost:3142/debian unstable/main amd64 libsyntax-keyword-try-perl amd64 0.31-1+b1 [27.2 kB] Get:140 http://localhost:3142/debian unstable/main amd64 libterm-readkey-perl amd64 2.38-2+b5 [24.7 kB] Get:141 http://localhost:3142/debian unstable/main amd64 libtext-levenshteinxs-perl amd64 0.03-5+b5 [8780 B] Get:142 http://localhost:3142/debian unstable/main amd64 libtext-markdown-discount-perl amd64 0.18-1+b1 [13.2 kB] Get:143 http://localhost:3142/debian unstable/main amd64 libtext-xslate-perl amd64 3.5.9-2+b3 [175 kB] Get:144 http://localhost:3142/debian unstable/main amd64 libtime-duration-perl all 1.21-2 [13.1 kB] Get:145 http://localhost:3142/debian unstable/main amd64 libtime-moment-perl amd64 0.46-1+b1 [78.4 kB] Get:146 http://localhost:3142/debian unstable/main amd64 libunicode-utf8-perl amd64 0.75-1+b1 [28.8 kB] Get:147 http://localhost:3142/debian unstable/main amd64 libwww-mechanize-perl all 2.22-1 [117 kB] Get:148 http://localhost:3142/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-2 [15.1 kB] Get:149 http://localhost:3142/debian unstable/main amd64 libxml-sax-base-perl all 1.09-3 [20.6 kB] Get:150 http://localhost:3142/debian unstable/main amd64 libxml-sax-perl all 1.02+dfsg-5 [53.6 kB] Get:151 http://localhost:3142/debian unstable/main amd64 libxml-libxml-perl amd64 2.0207+dfsg+really+2.0134-8+b1 [314 kB] Get:152 http://localhost:3142/debian unstable/main amd64 libyaml-0-2 amd64 0.2.5-2+b1 [53.8 kB] Get:153 http://localhost:3142/debian unstable/main amd64 libyaml-libyaml-perl amd64 0.910.0+ds-1+b1 [48.2 kB] Get:154 http://localhost:3142/debian unstable/main amd64 plzip amd64 1.13-2 [72.8 kB] Get:155 http://localhost:3142/debian unstable/main amd64 lzop amd64 1.04-2 [84.2 kB] Get:156 http://localhost:3142/debian unstable/main amd64 patchutils amd64 0.4.5-1 [85.7 kB] Get:157 http://localhost:3142/debian unstable/main amd64 t1utils amd64 1.41-4 [62.1 kB] Get:158 http://localhost:3142/debian unstable/main amd64 unzip amd64 6.0-31 [176 kB] Get:159 http://localhost:3142/debian unstable/main amd64 lintian all 2.139.0 [1034 kB] Preconfiguring packages ... Fetched 19.1 MB in 0s (166 MB/s) Selecting previously unselected package netbase. (Reading database ... 36046 files and directories currently installed.) Preparing to unpack .../000-netbase_6.6_all.deb ... Unpacking netbase (6.6) ... Selecting previously unselected package libproc2-1:amd64. Preparing to unpack .../001-libproc2-1_2%3a4.0.7-1_amd64.deb ... Unpacking libproc2-1:amd64 (2:4.0.7-1) ... Selecting previously unselected package procps. Preparing to unpack .../002-procps_2%3a4.0.7-1_amd64.deb ... Unpacking procps (2:4.0.7-1) ... Selecting previously unselected package openssl. Preparing to unpack .../003-openssl_3.6.4-1_amd64.deb ... Unpacking openssl (3.6.4-1) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../004-ca-certificates_20260816_all.deb ... Unpacking ca-certificates (20260816) ... Selecting previously unselected package libtext-charwidth-perl:amd64. Preparing to unpack .../005-libtext-charwidth-perl_0.04-12+b1_amd64.deb ... Unpacking libtext-charwidth-perl:amd64 (0.04-12+b1) ... Selecting previously unselected package libtext-wrapi18n-perl. Preparing to unpack .../006-libtext-wrapi18n-perl_0.06-11_all.deb ... Unpacking libtext-wrapi18n-perl (0.06-11) ... Selecting previously unselected package ucf. Preparing to unpack .../007-ucf_3.0056_all.deb ... Moving old data out of the way Unpacking ucf (3.0056) ... Selecting previously unselected package libglib2.0-0t64:amd64. Preparing to unpack .../008-libglib2.0-0t64_2.89.4-2_amd64.deb ... Unpacking libglib2.0-0t64:amd64 (2.89.4-2) ... Selecting previously unselected package shared-mime-info. Preparing to unpack .../009-shared-mime-info_2.4-5+b3_amd64.deb ... Unpacking shared-mime-info (2.4-5+b3) ... Selecting previously unselected package libnghttp3-9:amd64. Preparing to unpack .../010-libnghttp3-9_1.17.0-1_amd64.deb ... Unpacking libnghttp3-9:amd64 (1.17.0-1) ... Selecting previously unselected package libngtcp2-16:amd64. Preparing to unpack .../011-libngtcp2-16_1.24.0-1_amd64.deb ... Unpacking libngtcp2-16:amd64 (1.24.0-1) ... Selecting previously unselected package libbrotli1:amd64. Preparing to unpack .../012-libbrotli1_1.2.0-4+b1_amd64.deb ... Unpacking libbrotli1:amd64 (1.2.0-4+b1) ... Selecting previously unselected package libkrb5support0:amd64. Preparing to unpack .../013-libkrb5support0_1.22.1-3_amd64.deb ... Unpacking libkrb5support0:amd64 (1.22.1-3) ... Selecting previously unselected package libcom-err2:amd64. Preparing to unpack .../014-libcom-err2_1.47.4-1+b1_amd64.deb ... Unpacking libcom-err2:amd64 (1.47.4-1+b1) ... Selecting previously unselected package libk5crypto3:amd64. Preparing to unpack .../015-libk5crypto3_1.22.1-3_amd64.deb ... Unpacking libk5crypto3:amd64 (1.22.1-3) ... Selecting previously unselected package libkeyutils1:amd64. Preparing to unpack .../016-libkeyutils1_1.6.3-6+b2_amd64.deb ... Unpacking libkeyutils1:amd64 (1.6.3-6+b2) ... Selecting previously unselected package libkrb5-3:amd64. Preparing to unpack .../017-libkrb5-3_1.22.1-3_amd64.deb ... Unpacking libkrb5-3:amd64 (1.22.1-3) ... Selecting previously unselected package libgssapi-krb5-2:amd64. Preparing to unpack .../018-libgssapi-krb5-2_1.22.1-3_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.22.1-3) ... Selecting previously unselected package libnghttp2-14:amd64. Preparing to unpack .../019-libnghttp2-14_1.70.0-1_amd64.deb ... Unpacking libnghttp2-14:amd64 (1.70.0-1) ... Selecting previously unselected package libngtcp2-crypto-gnutls8:amd64. Preparing to unpack .../020-libngtcp2-crypto-gnutls8_1.24.0-1_amd64.deb ... Unpacking libngtcp2-crypto-gnutls8:amd64 (1.24.0-1) ... Selecting previously unselected package libpsl5t64:amd64. Preparing to unpack .../021-libpsl5t64_0.23.3-1_amd64.deb ... Unpacking libpsl5t64:amd64 (0.23.3-1) ... Selecting previously unselected package libssh2-1t64:amd64. Preparing to unpack .../022-libssh2-1t64_1.11.1-6_amd64.deb ... Unpacking libssh2-1t64:amd64 (1.11.1-6) ... Selecting previously unselected package libcurl4-gnutls:amd64. Preparing to unpack .../023-libcurl4-gnutls_8.22.0-1_amd64.deb ... Unpacking libcurl4-gnutls:amd64 (8.22.0-1) ... Selecting previously unselected package libfyaml0:amd64. Preparing to unpack .../024-libfyaml0_0.9.4-1_amd64.deb ... Unpacking libfyaml0:amd64 (0.9.4-1) ... Selecting previously unselected package libstemmer0d:amd64. Preparing to unpack .../025-libstemmer0d_3.1.1-1_amd64.deb ... Unpacking libstemmer0d:amd64 (3.1.1-1) ... Selecting previously unselected package libxmlb2:amd64. Preparing to unpack .../026-libxmlb2_0.3.29-1_amd64.deb ... Unpacking libxmlb2:amd64 (0.3.29-1) ... Selecting previously unselected package libappstream5:amd64. Preparing to unpack .../027-libappstream5_1.1.6-1_amd64.deb ... Unpacking libappstream5:amd64 (1.1.6-1) ... Selecting previously unselected package appstream. Preparing to unpack .../028-appstream_1.1.6-1_amd64.deb ... Unpacking appstream (1.1.6-1) ... Selecting previously unselected package diffstat. Preparing to unpack .../029-diffstat_1.69-1_amd64.deb ... Unpacking diffstat (1.69-1) ... Selecting previously unselected package distro-info-data. Preparing to unpack .../030-distro-info-data_2026.08.20-1_all.deb ... Unpacking distro-info-data (2026.08.20-1) ... Selecting previously unselected package iso-codes. Preparing to unpack .../031-iso-codes_4.20.1-1_all.deb ... Unpacking iso-codes (4.20.1-1) ... Selecting previously unselected package libaliased-perl. Preparing to unpack .../032-libaliased-perl_0.34-3_all.deb ... Unpacking libaliased-perl (0.34-3) ... Selecting previously unselected package libapt-pkg-perl. Preparing to unpack .../033-libapt-pkg-perl_0.1.43+b1_amd64.deb ... Unpacking libapt-pkg-perl (0.1.43+b1) ... Selecting previously unselected package libb-hooks-op-check-perl:amd64. Preparing to unpack .../034-libb-hooks-op-check-perl_0.22-3+b5_amd64.deb ... Unpacking libb-hooks-op-check-perl:amd64 (0.22-3+b5) ... Selecting previously unselected package libdynaloader-functions-perl. Preparing to unpack .../035-libdynaloader-functions-perl_0.004-2_all.deb ... Unpacking libdynaloader-functions-perl (0.004-2) ... Selecting previously unselected package libdevel-callchecker-perl:amd64. Preparing to unpack .../036-libdevel-callchecker-perl_0.009-3+b1_amd64.deb ... Unpacking libdevel-callchecker-perl:amd64 (0.009-3+b1) ... Selecting previously unselected package libparams-classify-perl:amd64. Preparing to unpack .../037-libparams-classify-perl_0.015-2+b6_amd64.deb ... Unpacking libparams-classify-perl:amd64 (0.015-2+b6) ... Selecting previously unselected package libmodule-runtime-perl. Preparing to unpack .../038-libmodule-runtime-perl_0.018-1_all.deb ... Unpacking libmodule-runtime-perl (0.018-1) ... Selecting previously unselected package libtry-tiny-perl. Preparing to unpack .../039-libtry-tiny-perl_0.32-1_all.deb ... Unpacking libtry-tiny-perl (0.32-1) ... Selecting previously unselected package libmodule-implementation-perl. Preparing to unpack .../040-libmodule-implementation-perl_0.09-2_all.deb ... Unpacking libmodule-implementation-perl (0.09-2) ... Selecting previously unselected package libsub-exporter-progressive-perl. Preparing to unpack .../041-libsub-exporter-progressive-perl_0.001013-3_all.deb ... Unpacking libsub-exporter-progressive-perl (0.001013-3) ... Selecting previously unselected package libvariable-magic-perl. Preparing to unpack .../042-libvariable-magic-perl_0.64-1+b2_amd64.deb ... Unpacking libvariable-magic-perl (0.64-1+b2) ... Selecting previously unselected package libb-hooks-endofscope-perl. Preparing to unpack .../043-libb-hooks-endofscope-perl_0.28-2_all.deb ... Unpacking libb-hooks-endofscope-perl (0.28-2) ... Selecting previously unselected package libberkeleydb-perl:amd64. Preparing to unpack .../044-libberkeleydb-perl_0.66-2+b2_amd64.deb ... Unpacking libberkeleydb-perl:amd64 (0.66-2+b2) ... Selecting previously unselected package libcapture-tiny-perl. Preparing to unpack .../045-libcapture-tiny-perl_0.50-1_all.deb ... Unpacking libcapture-tiny-perl (0.50-1) ... Selecting previously unselected package libhtml-tagset-perl. Preparing to unpack .../046-libhtml-tagset-perl_3.24-1_all.deb ... Unpacking libhtml-tagset-perl (3.24-1) ... Selecting previously unselected package liburi-perl. Preparing to unpack .../047-liburi-perl_5.36-1_all.deb ... Unpacking liburi-perl (5.36-1) ... Selecting previously unselected package libhtml-parser-perl:amd64. Preparing to unpack .../048-libhtml-parser-perl_3.83-2+b1_amd64.deb ... Unpacking libhtml-parser-perl:amd64 (3.83-2+b1) ... Selecting previously unselected package libcgi-pm-perl. Preparing to unpack .../049-libcgi-pm-perl_4.72-1_all.deb ... Unpacking libcgi-pm-perl (4.72-1) ... Selecting previously unselected package libclass-data-inheritable-perl. Preparing to unpack .../050-libclass-data-inheritable-perl_0.10-1_all.deb ... Unpacking libclass-data-inheritable-perl (0.10-1) ... Selecting previously unselected package libclass-inspector-perl. Preparing to unpack .../051-libclass-inspector-perl_1.36-3_all.deb ... Unpacking libclass-inspector-perl (1.36-3) ... Selecting previously unselected package libclass-method-modifiers-perl. Preparing to unpack .../052-libclass-method-modifiers-perl_2.15-1_all.deb ... Unpacking libclass-method-modifiers-perl (2.15-1) ... Selecting previously unselected package libclass-xsaccessor-perl. Preparing to unpack .../053-libclass-xsaccessor-perl_1.19-4+b7_amd64.deb ... Unpacking libclass-xsaccessor-perl (1.19-4+b7) ... Selecting previously unselected package libclone-perl:amd64. Preparing to unpack .../054-libclone-perl_0.50-1+b1_amd64.deb ... Unpacking libclone-perl:amd64 (0.50-1+b1) ... Selecting previously unselected package libconfig-tiny-perl. Preparing to unpack .../055-libconfig-tiny-perl_2.30-1_all.deb ... Unpacking libconfig-tiny-perl (2.30-1) ... Selecting previously unselected package libparams-util-perl. Preparing to unpack .../056-libparams-util-perl_1.102-3+b2_amd64.deb ... Unpacking libparams-util-perl (1.102-3+b2) ... Selecting previously unselected package libsub-install-perl. Preparing to unpack .../057-libsub-install-perl_0.929-1_all.deb ... Unpacking libsub-install-perl (0.929-1) ... Selecting previously unselected package libdata-optlist-perl. Preparing to unpack .../058-libdata-optlist-perl_0.114-1_all.deb ... Unpacking libdata-optlist-perl (0.114-1) ... Selecting previously unselected package libsub-exporter-perl. Preparing to unpack .../059-libsub-exporter-perl_0.990-1_all.deb ... Unpacking libsub-exporter-perl (0.990-1) ... Selecting previously unselected package libconst-fast-perl. Preparing to unpack .../060-libconst-fast-perl_0.014-2_all.deb ... Unpacking libconst-fast-perl (0.014-2) ... Selecting previously unselected package libcpanel-json-xs-perl:amd64. Preparing to unpack .../061-libcpanel-json-xs-perl_4.42-1+b1_amd64.deb ... Unpacking libcpanel-json-xs-perl:amd64 (4.42-1+b1) ... Selecting previously unselected package libdevel-stacktrace-perl. Preparing to unpack .../062-libdevel-stacktrace-perl_2.0500-1_all.deb ... Unpacking libdevel-stacktrace-perl (2.0500-1) ... Selecting previously unselected package libexception-class-perl. Preparing to unpack .../063-libexception-class-perl_1.45-1_all.deb ... Unpacking libexception-class-perl (1.45-1) ... Selecting previously unselected package libiterator-perl. Preparing to unpack .../064-libiterator-perl_0.03+ds1-2_all.deb ... Unpacking libiterator-perl (0.03+ds1-2) ... Selecting previously unselected package libiterator-util-perl. Preparing to unpack .../065-libiterator-util-perl_0.02+ds1-2_all.deb ... Unpacking libiterator-util-perl (0.02+ds1-2) ... Selecting previously unselected package libdata-dpath-perl. Preparing to unpack .../066-libdata-dpath-perl_0.60-1_all.deb ... Unpacking libdata-dpath-perl (0.60-1) ... Selecting previously unselected package libdata-messagepack-perl. Preparing to unpack .../067-libdata-messagepack-perl_1.02-3+b1_amd64.deb ... Unpacking libdata-messagepack-perl (1.02-3+b1) ... Selecting previously unselected package libnet-domain-tld-perl. Preparing to unpack .../068-libnet-domain-tld-perl_1.75-4_all.deb ... Unpacking libnet-domain-tld-perl (1.75-4) ... Selecting previously unselected package libdata-validate-domain-perl. Preparing to unpack .../069-libdata-validate-domain-perl_0.15-1_all.deb ... Unpacking libdata-validate-domain-perl (0.15-1) ... Selecting previously unselected package libnet-ipv6addr-perl. Preparing to unpack .../070-libnet-ipv6addr-perl_1.02-1_all.deb ... Unpacking libnet-ipv6addr-perl (1.02-1) ... Selecting previously unselected package libnet-netmask-perl. Preparing to unpack .../071-libnet-netmask-perl_2.0003-1_all.deb ... Unpacking libnet-netmask-perl (2.0003-1) ... Selecting previously unselected package libnetaddr-ip-perl. Preparing to unpack .../072-libnetaddr-ip-perl_4.079+dfsg-2+b6_amd64.deb ... Unpacking libnetaddr-ip-perl (4.079+dfsg-2+b6) ... Selecting previously unselected package libdata-validate-ip-perl. Preparing to unpack .../073-libdata-validate-ip-perl_0.31-1_all.deb ... Unpacking libdata-validate-ip-perl (0.31-1) ... Selecting previously unselected package libdata-validate-uri-perl. Preparing to unpack .../074-libdata-validate-uri-perl_0.07-3_all.deb ... Unpacking libdata-validate-uri-perl (0.07-3) ... Selecting previously unselected package libdevel-size-perl. Preparing to unpack .../075-libdevel-size-perl_0.87-1+b1_amd64.deb ... Unpacking libdevel-size-perl (0.87-1+b1) ... Selecting previously unselected package libdistro-info-perl. Preparing to unpack .../076-libdistro-info-perl_1.17_all.deb ... Unpacking libdistro-info-perl (1.17) ... Selecting previously unselected package libemail-address-xs-perl. Preparing to unpack .../077-libemail-address-xs-perl_1.05-1+b5_amd64.deb ... Unpacking libemail-address-xs-perl (1.05-1+b5) ... Selecting previously unselected package libencode-locale-perl. Preparing to unpack .../078-libencode-locale-perl_1.05-3_all.deb ... Unpacking libencode-locale-perl (1.05-3) ... Selecting previously unselected package libipc-system-simple-perl. Preparing to unpack .../079-libipc-system-simple-perl_1.30-2_all.deb ... Unpacking libipc-system-simple-perl (1.30-2) ... Selecting previously unselected package libfile-basedir-perl. Preparing to unpack .../080-libfile-basedir-perl_0.09-2_all.deb ... Unpacking libfile-basedir-perl (0.09-2) ... Selecting previously unselected package libnumber-compare-perl. Preparing to unpack .../081-libnumber-compare-perl_0.03-3_all.deb ... Unpacking libnumber-compare-perl (0.03-3) ... Selecting previously unselected package libtext-glob-perl. Preparing to unpack .../082-libtext-glob-perl_0.11-3_all.deb ... Unpacking libtext-glob-perl (0.11-3) ... Selecting previously unselected package libfile-find-rule-perl. Preparing to unpack .../083-libfile-find-rule-perl_0.35-1_all.deb ... Unpacking libfile-find-rule-perl (0.35-1) ... Selecting previously unselected package libfile-libmagic-perl. Preparing to unpack .../084-libfile-libmagic-perl_1.23-2+b3_amd64.deb ... Unpacking libfile-libmagic-perl (1.23-2+b3) ... Selecting previously unselected package libtimedate-perl. Preparing to unpack .../085-libtimedate-perl_2.3500-1_all.deb ... Unpacking libtimedate-perl (2.3500-1) ... Selecting previously unselected package libhttp-date-perl. Preparing to unpack .../086-libhttp-date-perl_6.08-1_all.deb ... Unpacking libhttp-date-perl (6.08-1) ... Selecting previously unselected package libfile-listing-perl. Preparing to unpack .../087-libfile-listing-perl_6.16-1_all.deb ... Unpacking libfile-listing-perl (6.16-1) ... Selecting previously unselected package libfile-sharedir-perl. Preparing to unpack .../088-libfile-sharedir-perl_1.118-3_all.deb ... Unpacking libfile-sharedir-perl (1.118-3) ... Selecting previously unselected package libio-string-perl. Preparing to unpack .../089-libio-string-perl_1.08-4_all.deb ... Unpacking libio-string-perl (1.08-4) ... Selecting previously unselected package libfont-ttf-perl. Preparing to unpack .../090-libfont-ttf-perl_1.06-2_all.deb ... Unpacking libfont-ttf-perl (1.06-2) ... Selecting previously unselected package libio-html-perl. Preparing to unpack .../091-libio-html-perl_1.004-3_all.deb ... Unpacking libio-html-perl (1.004-3) ... Selecting previously unselected package liblwp-mediatypes-perl. Preparing to unpack .../092-liblwp-mediatypes-perl_6.04-2_all.deb ... Unpacking liblwp-mediatypes-perl (6.04-2) ... Selecting previously unselected package libhttp-message-perl. Preparing to unpack .../093-libhttp-message-perl_7.04-1_all.deb ... Unpacking libhttp-message-perl (7.04-1) ... Selecting previously unselected package libhtml-form-perl. Preparing to unpack .../094-libhtml-form-perl_6.13-1_all.deb ... Unpacking libhtml-form-perl (6.13-1) ... Selecting previously unselected package libhtml-html5-entities-perl. Preparing to unpack .../095-libhtml-html5-entities-perl_0.004-3_all.deb ... Unpacking libhtml-html5-entities-perl (0.004-3) ... Selecting previously unselected package libhtml-tree-perl. Preparing to unpack .../096-libhtml-tree-perl_5.07-3_all.deb ... Unpacking libhtml-tree-perl (5.07-3) ... Selecting previously unselected package libhttp-cookies-perl. Preparing to unpack .../097-libhttp-cookies-perl_6.12-2_all.deb ... Unpacking libhttp-cookies-perl (6.12-2) ... Selecting previously unselected package libhttp-negotiate-perl. Preparing to unpack .../098-libhttp-negotiate-perl_6.01-2_all.deb ... Unpacking libhttp-negotiate-perl (6.01-2) ... Selecting previously unselected package perl-openssl-defaults:amd64. Preparing to unpack .../099-perl-openssl-defaults_7+b2_amd64.deb ... Unpacking perl-openssl-defaults:amd64 (7+b2) ... Selecting previously unselected package libnet-ssleay-perl:amd64. Preparing to unpack .../100-libnet-ssleay-perl_1.96-2_amd64.deb ... Unpacking libnet-ssleay-perl:amd64 (1.96-2) ... Selecting previously unselected package libio-socket-ssl-perl. Preparing to unpack .../101-libio-socket-ssl-perl_2.099-1_all.deb ... Unpacking libio-socket-ssl-perl (2.099-1) ... Selecting previously unselected package libnet-http-perl. Preparing to unpack .../102-libnet-http-perl_6.24-1_all.deb ... Unpacking libnet-http-perl (6.24-1) ... Selecting previously unselected package liblwp-protocol-https-perl. Preparing to unpack .../103-liblwp-protocol-https-perl_6.15-1_all.deb ... Unpacking liblwp-protocol-https-perl (6.15-1) ... Selecting previously unselected package libwww-robotrules-perl. Preparing to unpack .../104-libwww-robotrules-perl_6.03-1_all.deb ... Unpacking libwww-robotrules-perl (6.03-1) ... Selecting previously unselected package libwww-perl. Preparing to unpack .../105-libwww-perl_6.83-1_all.deb ... Unpacking libwww-perl (6.83-1) ... Selecting previously unselected package libhtml-tokeparser-simple-perl. Preparing to unpack .../106-libhtml-tokeparser-simple-perl_3.16-4_all.deb ... Unpacking libhtml-tokeparser-simple-perl (3.16-4) ... Selecting previously unselected package libimport-into-perl. Preparing to unpack .../107-libimport-into-perl_1.002005-2_all.deb ... Unpacking libimport-into-perl (1.002005-2) ... Selecting previously unselected package libio-interactive-perl. Preparing to unpack .../108-libio-interactive-perl_1.027-1_all.deb ... Unpacking libio-interactive-perl (1.027-1) ... Selecting previously unselected package libipc-run3-perl. Preparing to unpack .../109-libipc-run3-perl_0.049-1_all.deb ... Unpacking libipc-run3-perl (0.049-1) ... Selecting previously unselected package libjson-maybexs-perl. Preparing to unpack .../110-libjson-maybexs-perl_1.004008-1_all.deb ... Unpacking libjson-maybexs-perl (1.004008-1) ... Selecting previously unselected package liblist-compare-perl. Preparing to unpack .../111-liblist-compare-perl_0.55-2_all.deb ... Unpacking liblist-compare-perl (0.55-2) ... Selecting previously unselected package liblist-someutils-perl. Preparing to unpack .../112-liblist-someutils-perl_0.59-1_all.deb ... Unpacking liblist-someutils-perl (0.59-1) ... Selecting previously unselected package liblist-utilsby-perl. Preparing to unpack .../113-liblist-utilsby-perl_0.12-2_all.deb ... Unpacking liblist-utilsby-perl (0.12-2) ... Selecting previously unselected package liblz1:amd64. Preparing to unpack .../114-liblz1_1.16-2_amd64.deb ... Unpacking liblz1:amd64 (1.16-2) ... Selecting previously unselected package liblzo2-2:amd64. Preparing to unpack .../115-liblzo2-2_2.10-3+b2_amd64.deb ... Unpacking liblzo2-2:amd64 (2.10-3+b2) ... Selecting previously unselected package libmarkdown2:amd64. Preparing to unpack .../116-libmarkdown2_2.2.7-2.1+b2_amd64.deb ... Unpacking libmarkdown2:amd64 (2.2.7-2.1+b2) ... Selecting previously unselected package libmldbm-perl. Preparing to unpack .../117-libmldbm-perl_2.05-4_all.deb ... Unpacking libmldbm-perl (2.05-4) ... Selecting previously unselected package librole-tiny-perl. Preparing to unpack .../118-librole-tiny-perl_2.002005-1_all.deb ... Unpacking librole-tiny-perl (2.002005-1) ... Selecting previously unselected package libsub-quote-perl. Preparing to unpack .../119-libsub-quote-perl_2.006009-1_all.deb ... Unpacking libsub-quote-perl (2.006009-1) ... Selecting previously unselected package libmoo-perl. Preparing to unpack .../120-libmoo-perl_2.005005-1_all.deb ... Unpacking libmoo-perl (2.005005-1) ... Selecting previously unselected package libstrictures-perl. Preparing to unpack .../121-libstrictures-perl_2.000006-1_all.deb ... Unpacking libstrictures-perl (2.000006-1) ... Selecting previously unselected package libmoox-aliases-perl. Preparing to unpack .../122-libmoox-aliases-perl_0.001006-3_all.deb ... Unpacking libmoox-aliases-perl (0.001006-3) ... Selecting previously unselected package libmouse-perl:amd64. Preparing to unpack .../123-libmouse-perl_2.6.2-1+b1_amd64.deb ... Unpacking libmouse-perl:amd64 (2.6.2-1+b1) ... Selecting previously unselected package libpackage-stash-perl. Preparing to unpack .../124-libpackage-stash-perl_0.40-1_all.deb ... Unpacking libpackage-stash-perl (0.40-1) ... Selecting previously unselected package libsub-identify-perl. Preparing to unpack .../125-libsub-identify-perl_0.14-4+b1_amd64.deb ... Unpacking libsub-identify-perl (0.14-4+b1) ... Selecting previously unselected package libsub-name-perl:amd64. Preparing to unpack .../126-libsub-name-perl_0.28-1+b3_amd64.deb ... Unpacking libsub-name-perl:amd64 (0.28-1+b3) ... Selecting previously unselected package libnamespace-clean-perl. Preparing to unpack .../127-libnamespace-clean-perl_0.27-2_all.deb ... Unpacking libnamespace-clean-perl (0.27-2) ... Selecting previously unselected package libpath-tiny-perl. Preparing to unpack .../128-libpath-tiny-perl_0.150-1_all.deb ... Unpacking libpath-tiny-perl (0.150-1) ... Selecting previously unselected package libperlio-gzip-perl. Preparing to unpack .../129-libperlio-gzip-perl_0.20-1+b5_amd64.deb ... Unpacking libperlio-gzip-perl (0.20-1+b5) ... Selecting previously unselected package libperlio-utf8-strict-perl. Preparing to unpack .../130-libperlio-utf8-strict-perl_0.010-1+b4_amd64.deb ... Unpacking libperlio-utf8-strict-perl (0.010-1+b4) ... Selecting previously unselected package libproc-processtable-perl:amd64. Preparing to unpack .../131-libproc-processtable-perl_0.637-1+b3_amd64.deb ... Unpacking libproc-processtable-perl:amd64 (0.637-1+b3) ... Selecting previously unselected package libregexp-wildcards-perl. Preparing to unpack .../132-libregexp-wildcards-perl_1.05-3_all.deb ... Unpacking libregexp-wildcards-perl (1.05-3) ... Selecting previously unselected package libsereal-decoder-perl. Preparing to unpack .../133-libsereal-decoder-perl_5.006+ds-1+b1_amd64.deb ... Unpacking libsereal-decoder-perl (5.006+ds-1+b1) ... Selecting previously unselected package libsereal-encoder-perl. Preparing to unpack .../134-libsereal-encoder-perl_5.006+ds-1+b1_amd64.deb ... Unpacking libsereal-encoder-perl (5.006+ds-1+b1) ... Selecting previously unselected package libsort-versions-perl. Preparing to unpack .../135-libsort-versions-perl_1.62-3_all.deb ... Unpacking libsort-versions-perl (1.62-3) ... Selecting previously unselected package libxs-parse-keyword-perl. Preparing to unpack .../136-libxs-parse-keyword-perl_0.49-1+b1_amd64.deb ... Unpacking libxs-parse-keyword-perl (0.49-1+b1) ... Selecting previously unselected package libsyntax-keyword-try-perl. Preparing to unpack .../137-libsyntax-keyword-try-perl_0.31-1+b1_amd64.deb ... Unpacking libsyntax-keyword-try-perl (0.31-1+b1) ... Selecting previously unselected package libterm-readkey-perl. Preparing to unpack .../138-libterm-readkey-perl_2.38-2+b5_amd64.deb ... Unpacking libterm-readkey-perl (2.38-2+b5) ... Selecting previously unselected package libtext-levenshteinxs-perl. Preparing to unpack .../139-libtext-levenshteinxs-perl_0.03-5+b5_amd64.deb ... Unpacking libtext-levenshteinxs-perl (0.03-5+b5) ... Selecting previously unselected package libtext-markdown-discount-perl. Preparing to unpack .../140-libtext-markdown-discount-perl_0.18-1+b1_amd64.deb ... Unpacking libtext-markdown-discount-perl (0.18-1+b1) ... Selecting previously unselected package libtext-xslate-perl:amd64. Preparing to unpack .../141-libtext-xslate-perl_3.5.9-2+b3_amd64.deb ... Unpacking libtext-xslate-perl:amd64 (3.5.9-2+b3) ... Selecting previously unselected package libtime-duration-perl. Preparing to unpack .../142-libtime-duration-perl_1.21-2_all.deb ... Unpacking libtime-duration-perl (1.21-2) ... Selecting previously unselected package libtime-moment-perl. Preparing to unpack .../143-libtime-moment-perl_0.46-1+b1_amd64.deb ... Unpacking libtime-moment-perl (0.46-1+b1) ... Selecting previously unselected package libunicode-utf8-perl. Preparing to unpack .../144-libunicode-utf8-perl_0.75-1+b1_amd64.deb ... Unpacking libunicode-utf8-perl (0.75-1+b1) ... Selecting previously unselected package libwww-mechanize-perl. Preparing to unpack .../145-libwww-mechanize-perl_2.22-1_all.deb ... Unpacking libwww-mechanize-perl (2.22-1) ... Selecting previously unselected package libxml-namespacesupport-perl. Preparing to unpack .../146-libxml-namespacesupport-perl_1.12-2_all.deb ... Unpacking libxml-namespacesupport-perl (1.12-2) ... Selecting previously unselected package libxml-sax-base-perl. Preparing to unpack .../147-libxml-sax-base-perl_1.09-3_all.deb ... Unpacking libxml-sax-base-perl (1.09-3) ... Selecting previously unselected package libxml-sax-perl. Preparing to unpack .../148-libxml-sax-perl_1.02+dfsg-5_all.deb ... Unpacking libxml-sax-perl (1.02+dfsg-5) ... Selecting previously unselected package libxml-libxml-perl. Preparing to unpack .../149-libxml-libxml-perl_2.0207+dfsg+really+2.0134-8+b1_amd64.deb ... Unpacking libxml-libxml-perl (2.0207+dfsg+really+2.0134-8+b1) ... Selecting previously unselected package libyaml-0-2:amd64. Preparing to unpack .../150-libyaml-0-2_0.2.5-2+b1_amd64.deb ... Unpacking libyaml-0-2:amd64 (0.2.5-2+b1) ... Selecting previously unselected package libyaml-libyaml-perl. Preparing to unpack .../151-libyaml-libyaml-perl_0.910.0+ds-1+b1_amd64.deb ... Unpacking libyaml-libyaml-perl (0.910.0+ds-1+b1) ... Selecting previously unselected package plzip. Preparing to unpack .../152-plzip_1.13-2_amd64.deb ... Unpacking plzip (1.13-2) ... Selecting previously unselected package lzop. Preparing to unpack .../153-lzop_1.04-2_amd64.deb ... Unpacking lzop (1.04-2) ... Selecting previously unselected package patchutils. Preparing to unpack .../154-patchutils_0.4.5-1_amd64.deb ... Unpacking patchutils (0.4.5-1) ... Selecting previously unselected package t1utils. Preparing to unpack .../155-t1utils_1.41-4_amd64.deb ... Unpacking t1utils (1.41-4) ... Selecting previously unselected package unzip. Preparing to unpack .../156-unzip_6.0-31_amd64.deb ... Unpacking unzip (6.0-31) ... Selecting previously unselected package lintian. Preparing to unpack .../157-lintian_2.139.0_all.deb ... Unpacking lintian (2.139.0) ... Selecting previously unselected package sbuild-build-depends-lintian-dummy:ppc64el. Preparing to unpack .../158-sbuild-build-depends-lintian-dummy_0.invalid.0_ppc64el.deb ... Unpacking sbuild-build-depends-lintian-dummy:ppc64el (0.invalid.0) ... Setting up libapt-pkg-perl (0.1.43+b1) ... Setting up liblz1:amd64 (1.16-2) ... Setting up libberkeleydb-perl:amd64 (0.66-2+b2) ... Setting up plzip (1.13-2) ... update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip (lzip) in auto mode update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip-compressor (lzip-compressor) in auto mode update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip-decompressor (lzip-decompressor) in auto mode Setting up libtext-charwidth-perl:amd64 (0.04-12+b1) ... Setting up libkeyutils1:amd64 (1.6.3-6+b2) ... Setting up libunicode-utf8-perl (0.75-1+b1) ... Setting up libmouse-perl:amd64 (2.6.2-1+b1) ... Setting up libdata-messagepack-perl (1.02-3+b1) ... Setting up libclass-inspector-perl (1.36-3) ... Setting up libdynaloader-functions-perl (0.004-2) ... Setting up libtext-glob-perl (0.11-3) ... Setting up libclass-method-modifiers-perl (2.15-1) ... Setting up liblist-compare-perl (0.55-2) ... Setting up libclone-perl:amd64 (0.50-1+b1) ... Setting up libyaml-0-2:amd64 (0.2.5-2+b1) ... Setting up libsub-identify-perl (0.14-4+b1) ... Setting up distro-info-data (2026.08.20-1) ... Setting up libcpanel-json-xs-perl:amd64 (4.42-1+b1) ... Setting up libhtml-tagset-perl (3.24-1) ... Setting up libdevel-size-perl (0.87-1+b1) ... Setting up unzip (6.0-31) ... Setting up libbrotli1:amd64 (1.2.0-4+b1) ... Setting up liblwp-mediatypes-perl (6.04-2) ... Setting up libyaml-libyaml-perl (0.910.0+ds-1+b1) ... Setting up libio-interactive-perl (1.027-1) ... Setting up libtry-tiny-perl (0.32-1) ... Setting up libpsl5t64:amd64 (0.23.3-1) ... Setting up libnghttp2-14:amd64 (1.70.0-1) ... Setting up perl-openssl-defaults:amd64 (7+b2) ... Setting up libmldbm-perl (2.05-4) ... Setting up libxml-namespacesupport-perl (1.12-2) ... Setting up liblzo2-2:amd64 (2.10-3+b2) ... Setting up libtime-moment-perl (0.46-1+b1) ... Setting up libencode-locale-perl (1.05-3) ... Setting up libcom-err2:amd64 (1.47.4-1+b1) ... Setting up libconfig-tiny-perl (2.30-1) ... Setting up libsereal-encoder-perl (5.006+ds-1+b1) ... Setting up liblist-utilsby-perl (0.12-2) ... Setting up libtext-wrapi18n-perl (0.06-11) ... Setting up libnet-netmask-perl (2.0003-1) ... Setting up libsub-install-perl (0.929-1) ... Setting up libfyaml0:amd64 (0.9.4-1) ... Setting up libkrb5support0:amd64 (1.22.1-3) ... Setting up libnumber-compare-perl (0.03-3) ... Setting up patchutils (0.4.5-1) ... Setting up libjson-maybexs-perl (1.004008-1) ... Setting up libxml-sax-base-perl (1.09-3) ... Setting up libio-string-perl (1.08-4) ... Setting up libnetaddr-ip-perl (4.079+dfsg-2+b6) ... Setting up libglib2.0-0t64:amd64 (2.89.4-2) ... No schema files found: doing nothing. Setting up libclass-data-inheritable-perl (0.10-1) ... Setting up libproc2-1:amd64 (2:4.0.7-1) ... Setting up libfile-find-rule-perl (0.35-1) ... Setting up libipc-system-simple-perl (1.30-2) ... Setting up libnet-domain-tld-perl (1.75-4) ... Setting up libperlio-utf8-strict-perl (0.010-1+b4) ... Setting up t1utils (1.41-4) ... Setting up shared-mime-info (2.4-5+b3) ... Setting up diffstat (1.69-1) ... Setting up libvariable-magic-perl (0.64-1+b2) ... Setting up libio-html-perl (1.004-3) ... Setting up libb-hooks-op-check-perl:amd64 (0.22-3+b5) ... Setting up libfile-libmagic-perl (1.23-2+b3) ... Setting up libk5crypto3:amd64 (1.22.1-3) ... Setting up libparams-util-perl (1.102-3+b2) ... Setting up libtime-duration-perl (1.21-2) ... Setting up libtext-xslate-perl:amd64 (3.5.9-2+b3) ... Setting up libnghttp3-9:amd64 (1.17.0-1) ... Setting up libsub-exporter-progressive-perl (0.001013-3) ... Setting up libcapture-tiny-perl (0.50-1) ... Setting up libtimedate-perl (2.3500-1) ... Setting up libsub-name-perl:amd64 (0.28-1+b3) ... Setting up libdata-validate-domain-perl (0.15-1) ... Setting up libproc-processtable-perl:amd64 (0.637-1+b3) ... Setting up libpath-tiny-perl (0.150-1) ... Setting up lzop (1.04-2) ... Setting up procps (2:4.0.7-1) ... Setting up librole-tiny-perl (2.002005-1) ... Setting up libipc-run3-perl (0.049-1) ... Setting up libregexp-wildcards-perl (1.05-3) ... Setting up libfile-sharedir-perl (1.118-3) ... Setting up libaliased-perl (0.34-3) ... Setting up netbase (6.6) ... Setting up libngtcp2-16:amd64 (1.24.0-1) ... Setting up libstrictures-perl (2.000006-1) ... Setting up libsub-quote-perl (2.006009-1) ... Setting up libdevel-stacktrace-perl (2.0500-1) ... Setting up libclass-xsaccessor-perl (1.19-4+b7) ... Setting up libkrb5-3:amd64 (1.22.1-3) ... Setting up libstemmer0d:amd64 (3.1.1-1) ... Setting up libsort-versions-perl (1.62-3) ... Setting up libssh2-1t64:amd64 (1.11.1-6) ... Setting up libterm-readkey-perl (2.38-2+b5) ... Setting up libfont-ttf-perl (1.06-2) ... Setting up openssl (3.6.4-1) ... Setting up libtext-levenshteinxs-perl (0.03-5+b5) ... Setting up libperlio-gzip-perl (0.20-1+b5) ... Setting up libhtml-html5-entities-perl (0.004-3) ... Setting up libsereal-decoder-perl (5.006+ds-1+b1) ... Setting up libmarkdown2:amd64 (2.2.7-2.1+b2) ... Setting up liburi-perl (5.36-1) ... Setting up iso-codes (4.20.1-1) ... Setting up libnet-ipv6addr-perl (1.02-1) ... Setting up libngtcp2-crypto-gnutls8:amd64 (1.24.0-1) ... Setting up libdata-validate-ip-perl (0.31-1) ... Setting up libemail-address-xs-perl (1.05-1+b5) ... Setting up libnet-ssleay-perl:amd64 (1.96-2) ... Setting up libhttp-date-perl (6.08-1) ... Setting up libfile-basedir-perl (0.09-2) ... Setting up libfile-listing-perl (6.16-1) ... Setting up libdistro-info-perl (1.17) ... Setting up libxmlb2:amd64 (0.3.29-1) ... Setting up libnet-http-perl (6.24-1) ... Setting up libtext-markdown-discount-perl (0.18-1+b1) ... Setting up libexception-class-perl (1.45-1) ... Setting up libdevel-callchecker-perl:amd64 (0.009-3+b1) ... Setting up ca-certificates (20260816) ... Updating certificates in /etc/ssl/certs... 121 added, 0 removed; done. Setting up libdata-validate-uri-perl (0.07-3) ... Setting up libxs-parse-keyword-perl (0.49-1+b1) ... Setting up libgssapi-krb5-2:amd64 (1.22.1-3) ... Setting up libdata-optlist-perl (0.114-1) ... Setting up ucf (3.0056) ... Setting up libwww-robotrules-perl (6.03-1) ... Setting up libsyntax-keyword-try-perl (0.31-1+b1) ... Setting up libhtml-parser-perl:amd64 (3.83-2+b1) ... Setting up libio-socket-ssl-perl (2.099-1) ... Setting up libsub-exporter-perl (0.990-1) ... Setting up libhttp-message-perl (7.04-1) ... Setting up libhtml-form-perl (6.13-1) ... Setting up libiterator-perl (0.03+ds1-2) ... Setting up libcurl4-gnutls:amd64 (8.22.0-1) ... Setting up libhttp-negotiate-perl (6.01-2) ... Setting up libiterator-util-perl (0.02+ds1-2) ... Setting up libhttp-cookies-perl (6.12-2) ... Setting up libhtml-tree-perl (5.07-3) ... Setting up libparams-classify-perl:amd64 (0.015-2+b6) ... Setting up libcgi-pm-perl (4.72-1) ... Setting up libappstream5:amd64 (1.1.6-1) ... Setting up libxml-sax-perl (1.02+dfsg-5) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up appstream (1.1.6-1) ... ✔ Metadata cache was updated successfully. Setting up libmodule-runtime-perl (0.018-1) ... Setting up libxml-libxml-perl (2.0207+dfsg+really+2.0134-8+b1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Setting up libconst-fast-perl (0.014-2) ... Setting up libdata-dpath-perl (0.60-1) ... Setting up libmodule-implementation-perl (0.09-2) ... Setting up libpackage-stash-perl (0.40-1) ... Setting up libimport-into-perl (1.002005-2) ... Setting up libmoo-perl (2.005005-1) ... Setting up liblist-someutils-perl (0.59-1) ... Setting up libmoox-aliases-perl (0.001006-3) ... Setting up libb-hooks-endofscope-perl (0.28-2) ... Setting up libnamespace-clean-perl (0.27-2) ... Setting up liblwp-protocol-https-perl (6.15-1) ... Setting up libwww-perl (6.83-1) ... Setting up libhtml-tokeparser-simple-perl (3.16-4) ... Setting up libwww-mechanize-perl (2.22-1) ... Setting up lintian (2.139.0) ... Setting up sbuild-build-depends-lintian-dummy:ppc64el (0.invalid.0) ... Processing triggers for libc-bin (2.43-4) ... Processing triggers for man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Processing triggers for ca-certificates (20260816) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Running lintian... I: Lintian run was successful. +------------------------------------------------------------------------------+ | Post Build Wed, 02 Sep 2026 18:20:18 +0000 | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup Wed, 02 Sep 2026 18:20:18 +0000 | +------------------------------------------------------------------------------+ Purging /build/reproducible-path Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary Wed, 02 Sep 2026 18:20:19 +0000 | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: n/a Build-Time: 9338 Distribution: unstable Foreign Architectures: ppc64el Host Architecture: ppc64el Install-Time: 20 Job: libmaus2_2.0.813+ds-6 Lintian: pass Machine Architecture: amd64 Package: libmaus2 Package-Time: 9371 Source-Version: 2.0.813+ds-6 Space: n/a Status: successful Version: 2.0.813+ds-6 -------------------------------------------------------------------------------- Finished at 2026-09-02T18:18:56Z Build needed 02:36:11, no disk space