sbuild (Debian sbuild) 0.85.0 (04 January 2023) on debian-ci-siliconvalley +==============================================================================+ | libmems 1.6.0+4725-10 (s390x) Mon, 01 Apr 2024 09:06:28 +0000 | +==============================================================================+ Package: libmems Version: 1.6.0+4725-10 Source Version: 1.6.0+4725-10 Distribution: unstable Machine Architecture: amd64 Host Architecture: s390x Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/sid-amd64-sbuild-7fe86f02-342b-4cdb-a044-fabd179a569e' with '<>' I: NOTICE: Log filtering will replace 'build/libmems-uM1yUm/resolver-pF0Tpg' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://localhost:3142/debian sid InRelease [198 kB] Get:2 http://localhost:3142/debian sid/main Sources.diff/Index [63.6 kB] Get:3 http://localhost:3142/debian sid/main amd64 Packages.diff/Index [63.6 kB] Get:4 http://localhost:3142/debian sid/main Sources T-2024-04-01-0805.08-F-2024-04-01-0209.39.pdiff [11.9 kB] Get:5 http://localhost:3142/debian sid/main amd64 Packages T-2024-04-01-0805.08-F-2024-04-01-0209.39.pdiff [67.2 kB] Get:4 http://localhost:3142/debian sid/main Sources T-2024-04-01-0805.08-F-2024-04-01-0209.39.pdiff [11.9 kB] Get:6 http://localhost:3142/debian sid/main s390x Packages [9482 kB] Get:5 http://localhost:3142/debian sid/main amd64 Packages T-2024-04-01-0805.08-F-2024-04-01-0209.39.pdiff [67.2 kB] Fetched 9886 kB in 3s (3399 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: gcc-14-base libasan8 libatomic1 libcc1-0 libgcc-s1 libgomp1 libhwasan0 libitm1 liblsan0 libquadmath0 libstdc++6 libtsan2 libubsan1 13 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 10.1 MB of archives. After this operation, 1024 B disk space will be freed. Get:1 http://localhost:3142/debian sid/main amd64 libasan8 amd64 14-20240330-1 [2724 kB] Get:2 http://localhost:3142/debian sid/main amd64 libubsan1 amd64 14-20240330-1 [1071 kB] Get:3 http://localhost:3142/debian sid/main amd64 libtsan2 amd64 14-20240330-1 [2454 kB] Get:4 http://localhost:3142/debian sid/main amd64 gcc-14-base amd64 14-20240330-1 [43.2 kB] Get:5 http://localhost:3142/debian sid/main amd64 libstdc++6 amd64 14-20240330-1 [713 kB] Get:6 http://localhost:3142/debian sid/main amd64 libquadmath0 amd64 14-20240330-1 [147 kB] Get:7 http://localhost:3142/debian sid/main amd64 liblsan0 amd64 14-20240330-1 [1201 kB] Get:8 http://localhost:3142/debian sid/main amd64 libitm1 amd64 14-20240330-1 [25.8 kB] Get:9 http://localhost:3142/debian sid/main amd64 libhwasan0 amd64 14-20240330-1 [1485 kB] Get:10 http://localhost:3142/debian sid/main amd64 libgomp1 amd64 14-20240330-1 [136 kB] Get:11 http://localhost:3142/debian sid/main amd64 libcc1-0 amd64 14-20240330-1 [42.1 kB] Get:12 http://localhost:3142/debian sid/main amd64 libatomic1 amd64 14-20240330-1 [9216 B] Get:13 http://localhost:3142/debian sid/main amd64 libgcc-s1 amd64 14-20240330-1 [71.9 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 10.1 MB in 0s (172 MB/s) (Reading database ... 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Setting up libtsan2:amd64 (14-20240330-1) ... Setting up libcc1-0:amd64 (14-20240330-1) ... Setting up liblsan0:amd64 (14-20240330-1) ... Setting up libitm1:amd64 (14-20240330-1) ... Processing triggers for libc-bin (2.37-15.1) ... +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'libmems' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/libmems.git Please use: git clone https://salsa.debian.org/med-team/libmems.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 249 kB of source archives. Get:1 http://localhost:3142/debian sid/main libmems 1.6.0+4725-10 (dsc) [2380 B] Get:2 http://localhost:3142/debian sid/main libmems 1.6.0+4725-10 (tar) [237 kB] Get:3 http://localhost:3142/debian sid/main libmems 1.6.0+4725-10 (diff) [9384 B] Fetched 249 kB in 1s (431 kB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/libmems-uM1yUm/libmems-1.6.0+4725' with '<>' I: NOTICE: Log filtering will replace 'build/libmems-uM1yUm' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: dpkg-dev (>= 1.22.5), debhelper-compat (= 13), d-shlibs (>= 0.106~), pkg-config, libgenome-dev, libboost-filesystem-dev, libboost-iostreams-dev, libboost-program-options-dev, libmuscle-dev, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-s390x:amd64, libc-dev:s390x, libstdc++-dev:s390x Filtered Build-Depends: dpkg-dev (>= 1.22.5), debhelper-compat (= 13), d-shlibs (>= 0.106~), pkg-config, libgenome-dev, libboost-filesystem-dev, libboost-iostreams-dev, libboost-program-options-dev, libmuscle-dev, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-s390x:amd64, libc-dev:s390x, libstdc++-dev:s390x dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [609 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [879 B] Get:5 copy:/<>/apt_archive ./ Packages [922 B] Fetched 2410 B in 0s (0 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Execute external solver... The following packages were automatically installed and are no longer required: mount tzdata Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-s390x-linux-gnu bsdextrautils cpp-13-s390x-linux-gnu cpp-s390x-linux-gnu cross-config crossbuild-essential-s390x d-shlibs debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz fakeroot file g++-13-s390x-linux-gnu g++-s390x-linux-gnu gcc-13-base:s390x gcc-13-cross-base gcc-13-s390x-linux-gnu gcc-13-s390x-linux-gnu-base gcc-14-base:s390x gcc-14-cross-base gcc-s390x-linux-gnu gettext gettext-base groff-base icu-devtools intltool-debian libarchive-zip-perl libasan8:s390x libasan8-s390x-cross libatomic1:s390x libatomic1-s390x-cross libboost-atomic1.83-dev:s390x libboost-atomic1.83.0:s390x libboost-filesystem-dev:s390x libboost-filesystem1.83-dev:s390x libboost-filesystem1.83.0:s390x libboost-iostreams-dev:s390x libboost-iostreams1.83-dev:s390x libboost-iostreams1.83.0:s390x libboost-program-options-dev:s390x libboost-program-options1.83-dev:s390x libboost-program-options1.83.0:s390x libboost-regex1.83-dev:s390x libboost-regex1.83.0:s390x libboost-system1.83-dev:s390x libboost-system1.83.0:s390x libboost1.83-dev:s390x libbz2-1.0:s390x libc6:s390x libc6-dev:s390x libc6-dev-s390x-cross libc6-s390x-cross libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev:s390x libcrypt1:s390x libdebhelper-perl libdebian-dpkgcross-perl libelf1t64 libfakeroot libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-13-dev:s390x libgcc-13-dev-s390x-cross libgcc-s1:s390x libgcc-s1-s390x-cross libgenome-dev:s390x libgenome0:s390x libgomp1:s390x libgomp1-s390x-cross libicu-dev:s390x libicu72 libicu72:s390x libio-string-perl libitm1:s390x libitm1-s390x-cross liblocale-gettext-perl liblzma5:s390x libmagic-mgc libmagic1t64 libmuscle-dev:s390x libmuscle1:s390x libpipeline1 libpkgconf3 libstdc++-13-dev:s390x libstdc++-13-dev-s390x-cross libstdc++6:s390x libstdc++6-s390x-cross libsub-override-perl libtool libubsan1:s390x libubsan1-s390x-cross libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl libzstd1:s390x m4 man-db pkg-config:s390x pkgconf:s390x pkgconf-bin po-debconf sensible-utils ucf zlib1g:s390x Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc gcc-13-locales cpp-13-doc cpp-doc dh-make binutils-multiarch gcc-13-doc manpages-dev flex bison gdb-s390x-linux-gnu gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff libboost1.83-doc:s390x libboost-chrono1.83-dev:s390x libboost-container1.83-dev:s390x libboost-context1.83-dev:s390x libboost-contract1.83-dev:s390x libboost-coroutine1.83-dev:s390x libboost-date-time1.83-dev:s390x libboost-exception1.83-dev:s390x libboost-fiber1.83-dev:s390x libboost-graph-parallel1.83-dev:s390x libboost-graph1.83-dev:s390x libboost-json1.83-dev:s390x libboost-locale1.83-dev:s390x libboost-log1.83-dev:s390x libboost-math1.83-dev:s390x libboost-mpi-python1.83-dev:s390x libboost-mpi1.83-dev:s390x libboost-nowide1.83-dev:s390x libboost-numpy1.83-dev:s390x libboost-python1.83-dev:s390x libboost-random1.83-dev:s390x libboost-serialization1.83-dev:s390x libboost-stacktrace1.83-dev:s390x libboost-test1.83-dev:s390x libboost-thread1.83-dev:s390x libboost-timer1.83-dev:s390x libboost-type-erasure1.83-dev:s390x libboost-url1.83-dev:s390x libboost-wave1.83-dev:s390x libboost1.83-tools-dev:s390x libmpfrc++-dev:s390x libntl-dev:s390x glibc-doc:s390x libc-l10n:s390x locales:s390x libnss-nis:s390x libnss-nisplus:s390x manpages-dev:s390x icu-doc:s390x libstdc++-13-doc:s390x libtool-doc gfortran | fortran95-compiler gcj-jdk libyaml-shell-perl m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libidn2-0:s390x libarchive-cpio-perl libltdl-dev libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-s390x-linux-gnu bsdextrautils cpp-13-s390x-linux-gnu cpp-s390x-linux-gnu cross-config crossbuild-essential-s390x d-shlibs debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz fakeroot file g++-13-s390x-linux-gnu g++-s390x-linux-gnu gcc-13-base:s390x gcc-13-cross-base gcc-13-s390x-linux-gnu gcc-13-s390x-linux-gnu-base gcc-14-base:s390x gcc-14-cross-base gcc-s390x-linux-gnu gettext gettext-base groff-base icu-devtools intltool-debian libarchive-zip-perl libasan8:s390x libasan8-s390x-cross libatomic1:s390x libatomic1-s390x-cross libboost-atomic1.83-dev:s390x libboost-atomic1.83.0:s390x libboost-filesystem-dev:s390x libboost-filesystem1.83-dev:s390x libboost-filesystem1.83.0:s390x libboost-iostreams-dev:s390x libboost-iostreams1.83-dev:s390x libboost-iostreams1.83.0:s390x libboost-program-options-dev:s390x libboost-program-options1.83-dev:s390x libboost-program-options1.83.0:s390x libboost-regex1.83-dev:s390x libboost-regex1.83.0:s390x libboost-system1.83-dev:s390x libboost-system1.83.0:s390x libboost1.83-dev:s390x libbz2-1.0:s390x libc6:s390x libc6-dev:s390x libc6-dev-s390x-cross libc6-s390x-cross libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev:s390x libcrypt1:s390x libdebhelper-perl libdebian-dpkgcross-perl libelf1t64 libfakeroot libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-13-dev:s390x libgcc-13-dev-s390x-cross libgcc-s1:s390x libgcc-s1-s390x-cross libgenome-dev:s390x libgenome0:s390x libgomp1:s390x libgomp1-s390x-cross libicu-dev:s390x libicu72 libicu72:s390x libio-string-perl libitm1:s390x libitm1-s390x-cross liblocale-gettext-perl liblzma5:s390x libmagic-mgc libmagic1t64 libmuscle-dev:s390x libmuscle1:s390x libpipeline1 libpkgconf3 libstdc++-13-dev:s390x libstdc++-13-dev-s390x-cross libstdc++6:s390x libstdc++6-s390x-cross libsub-override-perl libtool libubsan1:s390x libubsan1-s390x-cross libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl libzstd1:s390x m4 man-db pkg-config:s390x pkgconf:s390x pkgconf-bin po-debconf sbuild-build-depends-main-dummy:s390x sensible-utils ucf zlib1g:s390x 0 upgraded, 118 newly installed, 0 to remove and 0 not upgraded. Need to get 113 MB of archives. After this operation, 591 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [992 B] Get:2 http://localhost:3142/debian sid/main amd64 liblocale-gettext-perl amd64 1.07-7 [15.0 kB] Get:3 http://localhost:3142/debian sid/main amd64 sensible-utils all 0.0.22 [22.4 kB] Get:4 http://localhost:3142/debian sid/main amd64 libmagic-mgc amd64 1:5.45-3 [314 kB] Get:5 http://localhost:3142/debian sid/main amd64 libmagic1t64 amd64 1:5.45-3 [105 kB] Get:6 http://localhost:3142/debian sid/main amd64 file amd64 1:5.45-3 [42.9 kB] Get:7 http://localhost:3142/debian sid/main amd64 gettext-base amd64 0.21-14+b1 [161 kB] Get:8 http://localhost:3142/debian sid/main amd64 libuchardet0 amd64 0.0.8-1+b1 [68.8 kB] Get:9 http://localhost:3142/debian sid/main amd64 groff-base amd64 1.23.0-3+b1 [1180 kB] Get:10 http://localhost:3142/debian sid/main amd64 bsdextrautils amd64 2.39.3-11 [89.8 kB] Get:11 http://localhost:3142/debian sid/main amd64 libpipeline1 amd64 1.5.7-2 [38.0 kB] Get:12 http://localhost:3142/debian sid/main amd64 man-db amd64 2.12.0-4 [1409 kB] Get:13 http://localhost:3142/debian sid/main amd64 ucf all 3.0043+nmu1 [55.2 kB] Get:14 http://localhost:3142/debian sid/main amd64 m4 amd64 1.4.19-4 [287 kB] Get:15 http://localhost:3142/debian sid/main amd64 autoconf all 2.71-3 [332 kB] Get:16 http://localhost:3142/debian sid/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get:17 http://localhost:3142/debian sid/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get:18 http://localhost:3142/debian sid/main amd64 autopoint all 0.21-14 [496 kB] Get:19 http://localhost:3142/debian sid/main amd64 binutils-s390x-linux-gnu amd64 2.42-4 [2448 kB] Get:20 http://localhost:3142/debian sid/main amd64 gcc-13-s390x-linux-gnu-base amd64 13.2.0-12cross1 [42.7 kB] Get:21 http://localhost:3142/debian sid/main amd64 cpp-13-s390x-linux-gnu amd64 13.2.0-12cross1 [8425 kB] Get:22 http://localhost:3142/debian sid/main amd64 cpp-s390x-linux-gnu amd64 4:13.2.0-7 [4724 B] Get:23 http://localhost:3142/debian sid/main amd64 cross-config all 2.6.20 [16.3 kB] Get:24 http://localhost:3142/debian sid/main amd64 gcc-13-cross-base all 13.2.0-12cross1 [38.1 kB] Get:25 http://localhost:3142/debian sid/main amd64 gcc-14-cross-base all 14-20240127-1cross1 [37.9 kB] Get:26 http://localhost:3142/debian sid/main amd64 libc6-s390x-cross all 2.37-12cross1 [1001 kB] Get:27 http://localhost:3142/debian sid/main amd64 libgcc-s1-s390x-cross all 14-20240127-1cross1 [31.8 kB] Get:28 http://localhost:3142/debian sid/main amd64 libgomp1-s390x-cross all 14-20240127-1cross1 [128 kB] Get:29 http://localhost:3142/debian sid/main amd64 libitm1-s390x-cross all 14-20240127-1cross1 [26.2 kB] Get:30 http://localhost:3142/debian sid/main amd64 libatomic1-s390x-cross all 14-20240127-1cross1 [8212 B] Get:31 http://localhost:3142/debian sid/main amd64 libasan8-s390x-cross all 14-20240127-1cross1 [2554 kB] Get:32 http://localhost:3142/debian sid/main amd64 libstdc++6-s390x-cross all 14-20240127-1cross1 [713 kB] Get:33 http://localhost:3142/debian sid/main amd64 libubsan1-s390x-cross all 14-20240127-1cross1 [1055 kB] Get:34 http://localhost:3142/debian sid/main amd64 libgcc-13-dev-s390x-cross all 13.2.0-12cross1 [843 kB] Get:35 http://localhost:3142/debian sid/main amd64 gcc-13-s390x-linux-gnu amd64 13.2.0-12cross1 [16.2 MB] Get:36 http://localhost:3142/debian sid/main amd64 gcc-s390x-linux-gnu amd64 4:13.2.0-7 [1444 B] Get:37 http://localhost:3142/debian sid/main amd64 libc6-dev-s390x-cross all 2.37-12cross1 [1383 kB] Get:38 http://localhost:3142/debian sid/main amd64 libstdc++-13-dev-s390x-cross all 13.2.0-12cross1 [2233 kB] Get:39 http://localhost:3142/debian sid/main amd64 g++-13-s390x-linux-gnu amd64 13.2.0-12cross1 [9368 kB] Get:40 http://localhost:3142/debian sid/main amd64 g++-s390x-linux-gnu amd64 4:13.2.0-7 [1196 B] Get:41 http://localhost:3142/debian sid/main amd64 libconfig-inifiles-perl all 3.000003-2 [45.9 kB] Get:42 http://localhost:3142/debian sid/main amd64 libio-string-perl all 1.08-4 [12.1 kB] Get:43 http://localhost:3142/debian sid/main amd64 libicu72 amd64 72.1-4+b1 [9395 kB] Get:44 http://localhost:3142/debian sid/main amd64 libxml2 amd64 2.9.14+dfsg-1.3+b2 [692 kB] Get:45 http://localhost:3142/debian sid/main amd64 libxml-namespacesupport-perl all 1.12-2 [15.1 kB] Get:46 http://localhost:3142/debian sid/main amd64 libxml-sax-base-perl all 1.09-3 [20.6 kB] Get:47 http://localhost:3142/debian sid/main amd64 libxml-sax-perl all 1.02+dfsg-3 [59.4 kB] Get:48 http://localhost:3142/debian sid/main amd64 libxml-libxml-perl amd64 2.0207+dfsg+really+2.0134-1+b3 [313 kB] Get:49 http://localhost:3142/debian sid/main amd64 libxml-simple-perl all 2.25-2 [69.8 kB] Get:50 http://localhost:3142/debian sid/main amd64 libyaml-perl all 1.31-1 [64.8 kB] Get:51 http://localhost:3142/debian sid/main amd64 libconfig-auto-perl all 0.44-2 [19.2 kB] Get:52 http://localhost:3142/debian sid/main amd64 libfile-which-perl all 1.27-2 [15.1 kB] Get:53 http://localhost:3142/debian sid/main amd64 libfile-homedir-perl all 1.006-2 [42.4 kB] Get:54 http://localhost:3142/debian sid/main amd64 libdebian-dpkgcross-perl all 2.6.20 [15.3 kB] Get:55 http://localhost:3142/debian sid/main amd64 dpkg-cross all 2.6.20 [25.8 kB] Get:56 http://localhost:3142/debian sid/main amd64 crossbuild-essential-s390x all 12.10 [3480 B] Get:57 http://localhost:3142/debian sid/main amd64 d-shlibs all 0.106 [10.9 kB] Get:58 http://localhost:3142/debian sid/main amd64 libdebhelper-perl all 13.15.3 [88.0 kB] Get:59 http://localhost:3142/debian sid/main amd64 libtool all 2.4.7-7 [517 kB] Get:60 http://localhost:3142/debian sid/main amd64 dh-autoreconf all 20 [17.1 kB] Get:61 http://localhost:3142/debian sid/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:62 http://localhost:3142/debian sid/main amd64 libsub-override-perl all 0.10-1 [10.6 kB] Get:63 http://localhost:3142/debian sid/main amd64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get:64 http://localhost:3142/debian sid/main amd64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get:65 http://localhost:3142/debian sid/main amd64 libelf1t64 amd64 0.191-1 [189 kB] Get:66 http://localhost:3142/debian sid/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get:67 http://localhost:3142/debian sid/main amd64 gettext amd64 0.21-14+b1 [1301 kB] Get:68 http://localhost:3142/debian sid/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get:69 http://localhost:3142/debian sid/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get:70 http://localhost:3142/debian sid/main amd64 debhelper all 13.15.3 [901 kB] Get:71 http://localhost:3142/debian sid/main amd64 libfakeroot amd64 1.34-1 [28.9 kB] Get:72 http://localhost:3142/debian sid/main amd64 fakeroot amd64 1.34-1 [74.0 kB] Get:73 http://localhost:3142/debian sid/main s390x gcc-13-base s390x 13.2.0-23 [44.6 kB] Get:74 http://localhost:3142/debian sid/main s390x gcc-14-base s390x 14-20240330-1 [43.2 kB] Get:75 http://localhost:3142/debian sid/main amd64 icu-devtools amd64 72.1-4+b1 [208 kB] Get:76 http://localhost:3142/debian sid/main s390x libgcc-s1 s390x 14-20240330-1 [31.8 kB] Get:77 http://localhost:3142/debian sid/main s390x libc6 s390x 2.37-15.1 [2250 kB] Get:78 http://localhost:3142/debian sid/main s390x libasan8 s390x 14-20240330-1 [2558 kB] Get:79 http://localhost:3142/debian sid/main s390x libatomic1 s390x 14-20240330-1 [8544 B] Get:80 http://localhost:3142/debian sid/main s390x libgomp1 s390x 14-20240330-1 [131 kB] Get:81 http://localhost:3142/debian sid/main s390x libitm1 s390x 14-20240330-1 [26.7 kB] Get:82 http://localhost:3142/debian sid/main s390x libstdc++6 s390x 14-20240330-1 [764 kB] Get:83 http://localhost:3142/debian sid/main s390x libubsan1 s390x 14-20240330-1 [1055 kB] Get:84 http://localhost:3142/debian sid/main s390x libgcc-13-dev s390x 13.2.0-23 [841 kB] Get:85 http://localhost:3142/debian sid/main s390x libcrypt1 s390x 1:4.4.36-4 [93.8 kB] Get:86 http://localhost:3142/debian sid/main s390x libcrypt-dev s390x 1:4.4.36-4 [122 kB] Get:87 http://localhost:3142/debian sid/main s390x libc6-dev s390x 2.37-15.1 [1400 kB] Get:88 http://localhost:3142/debian sid/main s390x libstdc++-13-dev s390x 13.2.0-23 [2285 kB] Get:89 http://localhost:3142/debian sid/main s390x libboost1.83-dev s390x 1.83.0-2.1+b1 [10.6 MB] Get:90 http://localhost:3142/debian sid/main s390x libboost-atomic1.83.0 s390x 1.83.0-2.1+b1 [233 kB] Get:91 http://localhost:3142/debian sid/main s390x libboost-atomic1.83-dev s390x 1.83.0-2.1+b1 [234 kB] Get:92 http://localhost:3142/debian sid/main s390x libboost-filesystem1.83.0 s390x 1.83.0-2.1+b1 [277 kB] Get:93 http://localhost:3142/debian sid/main s390x libboost-system1.83.0 s390x 1.83.0-2.1+b1 [230 kB] Get:94 http://localhost:3142/debian sid/main s390x libboost-system1.83-dev s390x 1.83.0-2.1+b1 [231 kB] Get:95 http://localhost:3142/debian sid/main s390x libboost-filesystem1.83-dev s390x 1.83.0-2.1+b1 [292 kB] Get:96 http://localhost:3142/debian sid/main s390x libboost-filesystem-dev s390x 1.83.0.2+b2 [3620 B] Get:97 http://localhost:3142/debian sid/main s390x libboost-regex1.83.0 s390x 1.83.0-2.1+b1 [330 kB] Get:98 http://localhost:3142/debian sid/main s390x libicu72 s390x 72.1-4+b1 [9216 kB] Get:99 http://localhost:3142/debian sid/main s390x libicu-dev s390x 72.1-4+b1 [10.1 MB] Get:100 http://localhost:3142/debian sid/main s390x libboost-regex1.83-dev s390x 1.83.0-2.1+b1 [351 kB] Get:101 http://localhost:3142/debian sid/main s390x libbz2-1.0 s390x 1.0.8-5.1 [41.9 kB] Get:102 http://localhost:3142/debian sid/main s390x liblzma5 s390x 5.6.1+really5.4.5-1 [241 kB] Get:103 http://localhost:3142/debian sid/main s390x libzstd1 s390x 1.5.5+dfsg2-2 [319 kB] Get:104 http://localhost:3142/debian sid/main s390x zlib1g s390x 1:1.3.dfsg-3.1 [85.9 kB] Get:105 http://localhost:3142/debian sid/main s390x libboost-iostreams1.83.0 s390x 1.83.0-2.1+b1 [252 kB] Get:106 http://localhost:3142/debian sid/main s390x libboost-iostreams1.83-dev s390x 1.83.0-2.1+b1 [258 kB] Get:107 http://localhost:3142/debian sid/main s390x libboost-iostreams-dev s390x 1.83.0.2+b2 [3568 B] Get:108 http://localhost:3142/debian sid/main s390x libboost-program-options1.83.0 s390x 1.83.0-2.1+b1 [341 kB] Get:109 http://localhost:3142/debian sid/main s390x libboost-program-options1.83-dev s390x 1.83.0-2.1+b1 [368 kB] Get:110 http://localhost:3142/debian sid/main s390x libboost-program-options-dev s390x 1.83.0.2+b2 [3604 B] Get:111 http://localhost:3142/debian sid/main s390x libgenome0 s390x 1.3.11+svn20110227.4616-6 [112 kB] Get:112 http://localhost:3142/debian sid/main s390x libgenome-dev s390x 1.3.11+svn20110227.4616-6 [178 kB] Get:113 http://localhost:3142/debian sid/main s390x libmuscle1 s390x 3.7+4565-7 [227 kB] Get:114 http://localhost:3142/debian sid/main s390x libmuscle-dev s390x 3.7+4565-7 [278 kB] Get:115 http://localhost:3142/debian sid/main amd64 libpkgconf3 amd64 1.8.1-1+b2 [36.4 kB] Get:116 http://localhost:3142/debian sid/main amd64 pkgconf-bin amd64 1.8.1-1+b2 [29.7 kB] Get:117 http://localhost:3142/debian sid/main s390x pkgconf s390x 1.8.1-1+b2 [26.2 kB] Get:118 http://localhost:3142/debian sid/main s390x pkg-config s390x 1.8.1-1+b2 [14.0 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 113 MB in 1s (193 MB/s) Selecting previously unselected package liblocale-gettext-perl. (Reading database ... 12887 files and directories currently installed.) Preparing to unpack .../000-liblocale-gettext-perl_1.07-7_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-7) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../001-sensible-utils_0.0.22_all.deb ... Unpacking sensible-utils (0.0.22) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../002-libmagic-mgc_1%3a5.45-3_amd64.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../003-libmagic1t64_1%3a5.45-3_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.45-3) ... Selecting previously unselected package file. Preparing to unpack .../004-file_1%3a5.45-3_amd64.deb ... Unpacking file (1:5.45-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../005-gettext-base_0.21-14+b1_amd64.deb ... Unpacking gettext-base (0.21-14+b1) ... 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Unpacking libyaml-perl (1.31-1) ... Selecting previously unselected package libconfig-auto-perl. Preparing to unpack .../049-libconfig-auto-perl_0.44-2_all.deb ... Unpacking libconfig-auto-perl (0.44-2) ... Selecting previously unselected package libfile-which-perl. Preparing to unpack .../050-libfile-which-perl_1.27-2_all.deb ... Unpacking libfile-which-perl (1.27-2) ... Selecting previously unselected package libfile-homedir-perl. Preparing to unpack .../051-libfile-homedir-perl_1.006-2_all.deb ... Unpacking libfile-homedir-perl (1.006-2) ... Selecting previously unselected package libdebian-dpkgcross-perl. Preparing to unpack .../052-libdebian-dpkgcross-perl_2.6.20_all.deb ... Unpacking libdebian-dpkgcross-perl (2.6.20) ... Selecting previously unselected package dpkg-cross. Preparing to unpack .../053-dpkg-cross_2.6.20_all.deb ... Unpacking dpkg-cross (2.6.20) ... Selecting previously unselected package crossbuild-essential-s390x. 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Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up groff-base (1.23.0-3+b1) ... Setting up libubsan1-s390x-cross (14-20240127-1cross1) ... Setting up cpp-s390x-linux-gnu (4:13.2.0-7) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.12.0-4) ... Not building database; man-db/auto-update is not 'true'. Setting up libxml-sax-perl (1.02+dfsg-3) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libgcc-13-dev-s390x-cross (13.2.0-12cross1) ... Setting up libxml-libxml-perl (2.0207+dfsg+really+2.0134-1+b3) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libstdc++-13-dev-s390x-cross (13.2.0-12cross1) ... Setting up debhelper (13.15.3) ... Setting up gcc-13-s390x-linux-gnu (13.2.0-12cross1) ... Setting up gcc-s390x-linux-gnu (4:13.2.0-7) ... Setting up g++-13-s390x-linux-gnu (13.2.0-12cross1) ... Setting up libxml-simple-perl (2.25-2) ... Setting up g++-s390x-linux-gnu (4:13.2.0-7) ... Setting up libconfig-auto-perl (0.44-2) ... Setting up libdebian-dpkgcross-perl (2.6.20) ... Setting up dpkg-cross (2.6.20) ... Setting up crossbuild-essential-s390x (12.10) ... Setting up libgcc-s1:s390x (14-20240330-1) ... Setting up libc6:s390x (2.37-15.1) ... Setting up libasan8:s390x (14-20240330-1) ... Setting up libbz2-1.0:s390x (1.0.8-5.1) ... Setting up libstdc++6:s390x (14-20240330-1) ... Setting up libitm1:s390x (14-20240330-1) ... Setting up libboost-program-options1.83.0:s390x (1.83.0-2.1+b1) ... Setting up libzstd1:s390x (1.5.5+dfsg2-2) ... Setting up libicu72:s390x (72.1-4+b1) ... Setting up libgenome0:s390x (1.3.11+svn20110227.4616-6) ... Setting up liblzma5:s390x (5.6.1+really5.4.5-1) ... Setting up libgenome-dev:s390x (1.3.11+svn20110227.4616-6) ... Setting up libboost-regex1.83.0:s390x (1.83.0-2.1+b1) ... Setting up zlib1g:s390x (1:1.3.dfsg-3.1) ... Setting up libcrypt1:s390x (1:4.4.36-4) ... Setting up libboost-filesystem1.83.0:s390x (1.83.0-2.1+b1) ... Setting up libgomp1:s390x (14-20240330-1) ... Setting up libboost-atomic1.83.0:s390x (1.83.0-2.1+b1) ... Setting up libboost-iostreams1.83.0:s390x (1.83.0-2.1+b1) ... Setting up libatomic1:s390x (14-20240330-1) ... Setting up libubsan1:s390x (14-20240330-1) ... Setting up libgcc-13-dev:s390x (13.2.0-23) ... Setting up libcrypt-dev:s390x (1:4.4.36-4) ... Setting up libc6-dev:s390x (2.37-15.1) ... Setting up libicu-dev:s390x (72.1-4+b1) ... Setting up libstdc++-13-dev:s390x (13.2.0-23) ... Setting up libboost1.83-dev:s390x (1.83.0-2.1+b1) ... Setting up libmuscle1:s390x (3.7+4565-7) ... Setting up libboost-program-options1.83-dev:s390x (1.83.0-2.1+b1) ... Setting up libboost-program-options-dev:s390x (1.83.0.2+b2) ... Setting up libmuscle-dev:s390x (3.7+4565-7) ... Setting up libboost-regex1.83-dev:s390x (1.83.0-2.1+b1) ... Setting up libboost-atomic1.83-dev:s390x (1.83.0-2.1+b1) ... Setting up libboost-system1.83-dev:s390x (1.83.0-2.1+b1) ... Setting up libboost-iostreams1.83-dev:s390x (1.83.0-2.1+b1) ... Setting up libboost-filesystem1.83-dev:s390x (1.83.0-2.1+b1) ... Setting up libboost-iostreams-dev:s390x (1.83.0.2+b2) ... Setting up libboost-filesystem-dev:s390x (1.83.0.2+b2) ... Setting up sbuild-build-depends-main-dummy:s390x (0.invalid.0) ... Processing triggers for libc-bin (2.37-15.1) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (s390x included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 6.1.0-13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.55-1 (2023-09-29) amd64 (x86_64) Toolchain package versions: binutils_2.42-4 dpkg-dev_1.22.6 g++-13_13.2.0-23 gcc-13_13.2.0-23 libc6-dev_2.37-15.1 libstdc++-13-dev_13.2.0-23 libstdc++-13-dev-s390x-cross_13.2.0-12cross1 libstdc++6_14-20240330-1 libstdc++6-s390x-cross_14-20240127-1cross1 linux-libc-dev_6.7.9-2 Package versions: adduser_3.137 apt_2.7.14 autoconf_2.71-3 automake_1:1.16.5-1.3 autopoint_0.21-14 autotools-dev_20220109.1 base-files_13 base-passwd_3.6.3 bash_5.2.21-2 binutils_2.42-4 binutils-common_2.42-4 binutils-s390x-linux-gnu_2.42-4 binutils-x86-64-linux-gnu_2.42-4 bsdextrautils_2.39.3-11 bsdutils_1:2.39.3-11 build-essential_12.10 bzip2_1.0.8-5.1 coreutils_9.4-3.1 cpp_4:13.2.0-7 cpp-13_13.2.0-23 cpp-13-s390x-linux-gnu_13.2.0-12cross1 cpp-13-x86-64-linux-gnu_13.2.0-23 cpp-s390x-linux-gnu_4:13.2.0-7 cpp-x86-64-linux-gnu_4:13.2.0-7 cross-config_2.6.20 crossbuild-essential-s390x_12.10 d-shlibs_0.106 dash_0.5.12-6 debconf_1.5.86 debhelper_13.15.3 debian-archive-keyring_2023.4 debianutils_5.17 dh-autoreconf_20 dh-strip-nondeterminism_1.13.1-1 diffutils_1:3.10-1 dpkg_1.22.6 dpkg-cross_2.6.20 dpkg-dev_1.22.6 dwz_0.15-1+b1 fakeroot_1.34-1 file_1:5.45-3 findutils_4.9.0-5 g++_4:13.2.0-7 g++-13_13.2.0-23 g++-13-s390x-linux-gnu_13.2.0-12cross1 g++-13-x86-64-linux-gnu_13.2.0-23 g++-s390x-linux-gnu_4:13.2.0-7 g++-x86-64-linux-gnu_4:13.2.0-7 gcc_4:13.2.0-7 gcc-13_13.2.0-23 gcc-13-base_13.2.0-23 gcc-13-cross-base_13.2.0-12cross1 gcc-13-s390x-linux-gnu_13.2.0-12cross1 gcc-13-s390x-linux-gnu-base_13.2.0-12cross1 gcc-13-x86-64-linux-gnu_13.2.0-23 gcc-14-base_14-20240330-1 gcc-14-cross-base_14-20240127-1cross1 gcc-s390x-linux-gnu_4:13.2.0-7 gcc-x86-64-linux-gnu_4:13.2.0-7 gettext_0.21-14+b1 gettext-base_0.21-14+b1 gpgv_2.2.40-3 grep_3.11-4 groff-base_1.23.0-3+b1 gzip_1.12-1.1 hostname_3.23+nmu2 icu-devtools_72.1-4+b1 init-system-helpers_1.66 intltool-debian_0.35.0+20060710.6 libacl1_2.3.2-1 libapt-pkg6.0t64_2.7.14 libarchive-zip-perl_1.68-1 libasan8_14-20240330-1 libasan8-s390x-cross_14-20240127-1cross1 libatomic1_14-20240330-1 libatomic1-s390x-cross_14-20240127-1cross1 libattr1_1:2.5.2-1 libaudit-common_1:3.1.2-2.1 libaudit1_1:3.1.2-2.1 libbinutils_2.42-4 libblkid1_2.39.3-11 libboost-atomic1.83-dev_1.83.0-2.1+b1 libboost-atomic1.83.0_1.83.0-2.1+b1 libboost-filesystem-dev_1.83.0.2+b2 libboost-filesystem1.83-dev_1.83.0-2.1+b1 libboost-filesystem1.83.0_1.83.0-2.1+b1 libboost-iostreams-dev_1.83.0.2+b2 libboost-iostreams1.83-dev_1.83.0-2.1+b1 libboost-iostreams1.83.0_1.83.0-2.1+b1 libboost-program-options-dev_1.83.0.2+b2 libboost-program-options1.83-dev_1.83.0-2.1+b1 libboost-program-options1.83.0_1.83.0-2.1+b1 libboost-regex1.83-dev_1.83.0-2.1+b1 libboost-regex1.83.0_1.83.0-2.1+b1 libboost-system1.83-dev_1.83.0-2.1+b1 libboost-system1.83.0_1.83.0-2.1+b1 libboost1.83-dev_1.83.0-2.1+b1 libbz2-1.0_1.0.8-5.1 libc-bin_2.37-15.1 libc-dev-bin_2.37-15.1 libc6_2.37-15.1 libc6-dev_2.37-15.1 libc6-dev-s390x-cross_2.37-12cross1 libc6-s390x-cross_2.37-12cross1 libcap-ng0_0.8.4-2 libcap2_1:2.66-5 libcc1-0_14-20240330-1 libconfig-auto-perl_0.44-2 libconfig-inifiles-perl_3.000003-2 libcrypt-dev_1:4.4.36-4 libcrypt1_1:4.4.36-4 libctf-nobfd0_2.42-4 libctf0_2.42-4 libdb5.3t64_5.3.28+dfsg2-6 libdebconfclient0_0.271+b3 libdebhelper-perl_13.15.3 libdebian-dpkgcross-perl_2.6.20 libdpkg-perl_1.22.6 libelf1t64_0.191-1 libfakeroot_1.34-1 libffi8_3.4.6-1 libfile-homedir-perl_1.006-2 libfile-stripnondeterminism-perl_1.13.1-1 libfile-which-perl_1.27-2 libgcc-13-dev_13.2.0-23 libgcc-13-dev-s390x-cross_13.2.0-12cross1 libgcc-s1_14-20240330-1 libgcc-s1-s390x-cross_14-20240127-1cross1 libgcrypt20_1.10.3-2 libgdbm-compat4t64_1.23-5.1+b1 libgdbm6t64_1.23-5.1+b1 libgenome-dev_1.3.11+svn20110227.4616-6 libgenome0_1.3.11+svn20110227.4616-6 libgmp10_2:6.3.0+dfsg-2+b1 libgnutls30t64_3.8.4-2 libgomp1_14-20240330-1 libgomp1-s390x-cross_14-20240127-1cross1 libgpg-error0_1.47-3 libgprofng0_2.42-4 libhogweed6t64_3.9.1-2.2 libhwasan0_14-20240330-1 libicu-dev_72.1-4+b1 libicu72_72.1-4+b1 libidn2-0_2.3.7-2 libio-string-perl_1.08-4 libisl23_0.26-3+b2 libitm1_14-20240330-1 libitm1-s390x-cross_14-20240127-1cross1 libjansson4_2.14-2+b2 liblocale-gettext-perl_1.07-7 liblsan0_14-20240330-1 liblz4-1_1.9.4-1+b2 liblzma5_5.6.1+really5.4.5-1 libmagic-mgc_1:5.45-3 libmagic1t64_1:5.45-3 libmd0_1.1.0-2 libmount1_2.39.3-11 libmpc3_1.3.1-1+b2 libmpfr6_4.2.1-1+b1 libmuscle-dev_3.7+4565-7 libmuscle1_3.7+4565-7 libnettle8t64_3.9.1-2.2 libp11-kit0_0.25.3-4 libpam-modules_1.5.3-6 libpam-modules-bin_1.5.3-6 libpam-runtime_1.5.3-6 libpam0t64_1.5.3-4 libpcre2-8-0_10.42-4+b1 libperl5.38t64_5.38.2-3.2 libpipeline1_1.5.7-2 libpkgconf3_1.8.1-1+b2 libquadmath0_14-20240330-1 libseccomp2_2.5.5-1 libselinux1_3.5-2+b1 libsemanage-common_3.5-1 libsemanage2_3.5-1+b3 libsepol2_3.5-2 libsframe1_2.42-4 libsmartcols1_2.39.3-11 libssl3t64_3.1.5-1.1 libstdc++-13-dev_13.2.0-23 libstdc++-13-dev-s390x-cross_13.2.0-12cross1 libstdc++6_14-20240330-1 libstdc++6-s390x-cross_14-20240127-1cross1 libsub-override-perl_0.10-1 libsystemd0_255.4-1+b1 libtasn1-6_4.19.0-3+b2 libtinfo6_6.4+20240113-1 libtool_2.4.7-7 libtsan2_14-20240330-1 libubsan1_14-20240330-1 libubsan1-s390x-cross_14-20240127-1cross1 libuchardet0_0.0.8-1+b1 libudev1_255.4-1+b1 libunistring5_1.2-1 libuuid1_2.39.3-11 libxml-libxml-perl_2.0207+dfsg+really+2.0134-1+b3 libxml-namespacesupport-perl_1.12-2 libxml-sax-base-perl_1.09-3 libxml-sax-perl_1.02+dfsg-3 libxml-simple-perl_2.25-2 libxml2_2.9.14+dfsg-1.3+b2 libxxhash0_0.8.2-2+b1 libyaml-perl_1.31-1 libzstd1_1.5.5+dfsg2-2 linux-libc-dev_6.7.9-2 login_1:4.13+dfsg1-4 m4_1.4.19-4 make_4.3-4.1 man-db_2.12.0-4 mawk_1.3.4.20240123-1 mount_2.39.3-11 ncurses-base_6.4+20240113-1 ncurses-bin_6.4+20240113-1 passwd_1:4.13+dfsg1-4 patch_2.7.6-7 perl_5.38.2-3.2 perl-base_5.38.2-3.2 perl-modules-5.38_5.38.2-3.2 pkg-config_1.8.1-1+b2 pkgconf_1.8.1-1+b2 pkgconf-bin_1.8.1-1+b2 po-debconf_1.0.21+nmu1 rpcsvc-proto_1.4.3-1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-2 sensible-utils_0.0.22 sysvinit-utils_3.08-7 tar_1.35+dfsg-3 tzdata_2024a-1 ucf_3.0043+nmu1 usr-is-merged_39 util-linux_2.39.3-11 xz-utils_5.6.1+really5.4.5-1 zlib1g_1:1.3.dfsg-3.1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: libmems Binary: libmems-dev, libmems1t64 Architecture: any Version: 1.6.0+4725-10 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , Étienne Mollier Homepage: http://sourceforge.net/p/mauve/code/HEAD/tree/libMems/trunk/ Standards-Version: 4.5.1 Vcs-Browser: https://salsa.debian.org/med-team/libmems Vcs-Git: https://salsa.debian.org/med-team/libmems.git Build-Depends: dpkg-dev (>= 1.22.5), debhelper-compat (= 13), d-shlibs (>= 0.106~), pkg-config, libgenome-dev, libboost-filesystem-dev, libboost-iostreams-dev, libboost-program-options-dev, libmuscle-dev Package-List: libmems-dev deb libdevel optional arch=any libmems1t64 deb libs optional arch=any Checksums-Sha1: 717cab0cd606be4ebdb1b5990ee89a85d8d6c39b 236796 libmems_1.6.0+4725.orig.tar.xz b7202f80fc37077db5314449570467ed6b27c2f5 9384 libmems_1.6.0+4725-10.debian.tar.xz Checksums-Sha256: 67265e1eb1b85a04533be431b906cc8d4773c799fb1a7809b346209380c41e91 236796 libmems_1.6.0+4725.orig.tar.xz 1fc7cded09ff2656f1eded565468782af6b350a01f34721f0217d5995533ef83 9384 libmems_1.6.0+4725-10.debian.tar.xz Files: a3f12384cfcf888f01b39f562024d5e8 236796 libmems_1.6.0+4725.orig.tar.xz c2e61764e8fa6ee523e5e6e1ccd9c2a4 9384 libmems_1.6.0+4725-10.debian.tar.xz Dgit: 9cebce8f76c941ed175a09c8230150074ab44d42 debian archive/debian/1.6.0+4725-10 https://git.dgit.debian.org/libmems -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmXtuBsUHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdpG+hAAuMgZqs3wPGT8BeACvSDnrVqThzS0 ua+8Z3CdWM2QuapqFhaOC3Pj5qwUf+db0G4waamHCMdOkmmJaDNVwSjUt/q4j3MQ PlpdxrXMBfsA5udDlF/a7RaeMVrIG0KNcd7i9xQGLaAWaAf4KcfiSRzMmxLybT9K WYeLYFSx4oZJjjgWCyaKj2IMaTOIzv2WdKK1Mr7ViCmfQSxayWfdnoDq0Rhz9XNv fuANGmovMwx1mq51tysYk2ttT0uM7JG4IULxyAeMtyMkqCUE7vztipiqBIUtq5ar DrQVIZnej6Fz1XZjYVpwVq31JteK9PeE9040Iyc+P+9DAThdWYZU8P3dn14abvBv 9VBal2dSXnDlm7wR55fFXyOzRSezdqgtziGhVUWF0mCDStrtmz618hb1IWhfz1h5 ZaaE9aIgyu6V2RZvF7gT2vM5xL5wPuJUCp5XGSOE8No4Zn6V/+GDoJgu6176wLgs CfnMITiC7r4L9R8A06yiaqPjIg1R318hrxqOJB4hrtVV5PEPHzQC32VfuzdGahfb 6M4Yqb+s4UJa0WUndB2kwKBmE6J9OX9ytwtVHB78ok/yZfWp7X9j5Gir7tPdhAJj Vo/rTLe7zBmNqlCbq4cq3K2EtVa8rFKI6cAWwK/hlUHtcksulYW+oo7Bc41A0CEF 3ViVTPmZP2FjgRY= =3qLL -----END PGP SIGNATURE----- gpgv: Signature made Sun Mar 10 13:39:39 2024 UTC gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA gpgv: issuer "emollier@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./libmems_1.6.0+4725-10.dsc: no acceptable signature found dpkg-source: info: extracting libmems in /<> dpkg-source: info: unpacking libmems_1.6.0+4725.orig.tar.xz dpkg-source: info: unpacking libmems_1.6.0+4725-10.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 01_fix_ctors.patch dpkg-source: info: applying 02_fix_a_Wformat.patch dpkg-source: info: applying pkg-config-directive.patch dpkg-source: info: applying 03_update_boost_m4_to_git_d9ff75.patch dpkg-source: info: applying 04_add_dependend_libs_to_link_command.patch dpkg-source: info: applying 05_gcc-6.patch dpkg-source: info: applying boost1.62.patch dpkg-source: info: applying drop-version-number.patch dpkg-source: info: applying fix-system.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.s390x DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LOGNAME=crossqa OLDPWD=/home/crossqa PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SBUILD_CONFIG=/tmp/tmp.4rPvm3amLA/sbuild.conf SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=sid-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1000 SCHROOT_GROUP=crossqa SCHROOT_SESSION_ID=sid-amd64-sbuild-7fe86f02-342b-4cdb-a044-fabd179a569e SCHROOT_UID=1000 SCHROOT_USER=crossqa SHELL=/bin/sh USER=crossqa XDG_SESSION_CLASS=user dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -as390x -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package libmems dpkg-buildpackage: info: source version 1.6.0+4725-10 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-architecture: warning: specified GNU system type s390x-linux-gnu does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture s390x debian/rules clean dh clean dh_clean debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a libtoolize: putting auxiliary files in AC_CONFIG_AUX_DIR, 'config'. libtoolize: copying file 'config/ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'. libtoolize: copying file 'm4/libtool.m4' libtoolize: copying file 'm4/ltoptions.m4' libtoolize: copying file 'm4/ltsugar.m4' libtoolize: copying file 'm4/ltversion.m4' libtoolize: copying file 'm4/lt~obsolete.m4' configure.ac:54: warning: AM_INIT_AUTOMAKE: two- and three-arguments forms are deprecated. ./lib/autoconf/general.m4:2434: AC_DIAGNOSE is expanded from... aclocal.m4:429: AM_INIT_AUTOMAKE is expanded from... configure.ac:54: the top level configure.ac:66: warning: The macro `AM_PROG_LIBTOOL' is obsolete. configure.ac:66: You should run autoupdate. m4/libtool.m4:101: AM_PROG_LIBTOOL is expanded from... configure.ac:66: the top level configure.ac:70: warning: The macro `AC_HEADER_STDC' is obsolete. configure.ac:70: You should run autoupdate. ./lib/autoconf/headers.m4:704: AC_HEADER_STDC is expanded from... configure.ac:70: the top level configure.ac:92: warning: The macro `AC_LANG_CPLUSPLUS' is obsolete. configure.ac:92: You should run autoupdate. ./lib/autoconf/c.m4:262: AC_LANG_CPLUSPLUS is expanded from... lib/m4sugar/m4sh.m4:692: _AS_IF_ELSE is expanded from... lib/m4sugar/m4sh.m4:699: AS_IF is expanded from... ./lib/autoconf/general.m4:2249: AC_CACHE_VAL is expanded from... ./lib/autoconf/general.m4:2270: AC_CACHE_CHECK is expanded from... m4/ac_cxx_namespaces.m4:12: AC_CXX_NAMESPACES is expanded from... configure.ac:92: the top level configure.ac:92: warning: The macro `AC_TRY_COMPILE' is obsolete. configure.ac:92: You should run autoupdate. ./lib/autoconf/general.m4:2847: AC_TRY_COMPILE is expanded from... lib/m4sugar/m4sh.m4:692: _AS_IF_ELSE is expanded from... lib/m4sugar/m4sh.m4:699: AS_IF is expanded from... ./lib/autoconf/general.m4:2249: AC_CACHE_VAL is expanded from... ./lib/autoconf/general.m4:2270: AC_CACHE_CHECK is expanded from... m4/ac_cxx_namespaces.m4:12: AC_CXX_NAMESPACES is expanded from... configure.ac:92: the top level configure.ac:122: warning: 'AM_CONFIG_HEADER': this macro is obsolete. configure.ac:122: You should use the 'AC_CONFIG_HEADERS' macro instead. ./lib/autoconf/general.m4:2434: AC_DIAGNOSE is expanded from... aclocal.m4:745: AM_CONFIG_HEADER is expanded from... configure.ac:122: the top level configure.ac:128: warning: The macro `AC_HEADER_TIME' is obsolete. configure.ac:128: You should run autoupdate. ./lib/autoconf/headers.m4:743: AC_HEADER_TIME is expanded from... configure.ac:128: the top level configure.ac:136: warning: AC_OUTPUT should be used without arguments. configure.ac:136: You should run autoupdate. configure.ac:54: warning: AM_INIT_AUTOMAKE: two- and three-arguments forms are deprecated. For more info, see: configure.ac:54: https://www.gnu.org/software/automake/manual/automake.html#Modernize-AM_005fINIT_005fAUTOMAKE-invocation configure.ac:66: installing 'config/compile' configure.ac:66: installing 'config/config.guess' configure.ac:66: installing 'config/config.sub' configure.ac:54: installing 'config/install-sh' configure.ac:54: installing 'config/missing' libMems/Makefile.am:48: warning: source file 'HomologyHMM/algebras.cc' is in a subdirectory, libMems/Makefile.am:48: but option 'subdir-objects' is disabled automake: warning: possible forward-incompatibility. automake: At least one source file is in a subdirectory, but the 'subdir-objects' automake: automake option hasn't been enabled. For now, the corresponding output automake: object file(s) will be placed in the top-level directory. However, this automake: behavior may change in a future Automake major version, with object automake: files being placed in the same subdirectory as the corresponding sources. automake: You are advised to start using 'subdir-objects' option throughout your automake: project, to avoid future incompatibilities. libMems/Makefile.am:48: warning: source file 'HomologyHMM/homology.cc' is in a subdirectory, libMems/Makefile.am:48: but option 'subdir-objects' is disabled libMems/Makefile.am:48: warning: source file 'HomologyHMM/homologymain.cc' is in a subdirectory, libMems/Makefile.am:48: but option 'subdir-objects' is disabled libMems/Makefile.am:51: warning: source file 'dmSML/asyncio.c' is in a subdirectory, libMems/Makefile.am:51: but option 'subdir-objects' is disabled libMems/Makefile.am:51: warning: source file 'dmSML/alinuxaio.c' is in a subdirectory, libMems/Makefile.am:51: but option 'subdir-objects' is disabled libMems/Makefile.am:51: warning: source file 'dmSML/aPOSIXaio.c' is in a subdirectory, libMems/Makefile.am:51: but option 'subdir-objects' is disabled libMems/Makefile.am:51: warning: source file 'dmSML/alibc.c' is in a subdirectory, libMems/Makefile.am:51: but option 'subdir-objects' is disabled libMems/Makefile.am:51: warning: source file 'dmSML/awin32aio.c' is in a subdirectory, libMems/Makefile.am:51: but option 'subdir-objects' is disabled libMems/Makefile.am:51: warning: source file 'dmSML/buffer.c' is in a subdirectory, libMems/Makefile.am:51: but option 'subdir-objects' is disabled libMems/Makefile.am:51: warning: source file 'dmSML/util.c' is in a subdirectory, libMems/Makefile.am:51: but option 'subdir-objects' is disabled libMems/Makefile.am:51: warning: source file 'dmSML/sorting.c' is in a subdirectory, libMems/Makefile.am:51: but option 'subdir-objects' is disabled libMems/Makefile.am:51: warning: source file 'dmSML/dmsort.c' is in a subdirectory, libMems/Makefile.am:51: but option 'subdir-objects' is disabled libMems/Makefile.am:51: warning: source file 'dmSML/timing.c' is in a subdirectory, libMems/Makefile.am:51: but option 'subdir-objects' is disabled libMems/Makefile.am:51: warning: source file 'dmSML/sml.c' is in a subdirectory, libMems/Makefile.am:51: but option 'subdir-objects' is disabled libMems/Makefile.am: installing 'config/depcomp' dh_auto_configure -a ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/s390x-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --host=s390x-linux-gnu configure: loading site script /etc/dpkg-cross/cross-config.s390x checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for s390x-linux-gnu-strip... s390x-linux-gnu-strip checking for a race-free mkdir -p... /usr/bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for s390x-linux-gnu-g++... s390x-linux-gnu-g++ checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... yes checking for suffix of object files... o checking whether the compiler supports GNU C++... yes checking whether s390x-linux-gnu-g++ accepts -g... yes checking for s390x-linux-gnu-g++ option to enable C++11 features... none needed checking whether make supports the include directive... yes (GNU style) checking dependency style of s390x-linux-gnu-g++... none checking whether ln -s works... yes checking build system type... x86_64-pc-linux-gnu checking host system type... s390x-ibm-linux-gnu checking how to print strings... printf checking for s390x-linux-gnu-gcc... s390x-linux-gnu-gcc checking whether the compiler supports GNU C... yes checking whether s390x-linux-gnu-gcc accepts -g... yes checking for s390x-linux-gnu-gcc option to enable C11 features... none needed checking whether s390x-linux-gnu-gcc understands -c and -o together... yes checking dependency style of s390x-linux-gnu-gcc... none checking for a sed that does not truncate output... /usr/bin/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking for ld used by s390x-linux-gnu-gcc... /usr/s390x-linux-gnu/bin/ld checking if the linker (/usr/s390x-linux-gnu/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/s390x-linux-gnu-nm -B checking the name lister (/usr/bin/s390x-linux-gnu-nm -B) interface... BSD nm checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-pc-linux-gnu file names to s390x-ibm-linux-gnu format... func_convert_file_noop checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/s390x-linux-gnu/bin/ld option to reload object files... -r checking for s390x-linux-gnu-file... no checking for file... file configure: WARNING: using cross tools not prefixed with host triplet checking for s390x-linux-gnu-objdump... s390x-linux-gnu-objdump checking how to recognize dependent libraries... pass_all checking for s390x-linux-gnu-dlltool... no checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for s390x-linux-gnu-ar... s390x-linux-gnu-ar checking for archiver @FILE support... @ checking for s390x-linux-gnu-strip... (cached) s390x-linux-gnu-strip checking for s390x-linux-gnu-ranlib... s390x-linux-gnu-ranlib checking command to parse /usr/bin/s390x-linux-gnu-nm -B output from s390x-linux-gnu-gcc object... ok checking for sysroot... no checking for a working dd... /usr/bin/dd checking how to truncate binary pipes... /usr/bin/dd bs=4096 count=1 checking for s390x-linux-gnu-mt... no checking for mt... no checking if : is a manifest tool... no checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for sys/time.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if s390x-linux-gnu-gcc supports -fno-rtti -fno-exceptions... no checking for s390x-linux-gnu-gcc option to produce PIC... -fPIC -DPIC checking if s390x-linux-gnu-gcc PIC flag -fPIC -DPIC works... yes checking if s390x-linux-gnu-gcc static flag -static works... yes checking if s390x-linux-gnu-gcc supports -c -o file.o... yes checking if s390x-linux-gnu-gcc supports -c -o file.o... (cached) yes checking whether the s390x-linux-gnu-gcc linker (/usr/s390x-linux-gnu/bin/ld -m elf64_s390) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking how to run the C++ preprocessor... s390x-linux-gnu-g++ -E checking for ld used by s390x-linux-gnu-g++... /usr/s390x-linux-gnu/bin/ld -m elf64_s390 checking if the linker (/usr/s390x-linux-gnu/bin/ld -m elf64_s390) is GNU ld... yes checking whether the s390x-linux-gnu-g++ linker (/usr/s390x-linux-gnu/bin/ld -m elf64_s390) supports shared libraries... yes checking for s390x-linux-gnu-g++ option to produce PIC... -fPIC -DPIC checking if s390x-linux-gnu-g++ PIC flag -fPIC -DPIC works... yes checking if s390x-linux-gnu-g++ static flag -static works... yes checking if s390x-linux-gnu-g++ supports -c -o file.o... yes checking if s390x-linux-gnu-g++ supports -c -o file.o... (cached) yes checking whether the s390x-linux-gnu-g++ linker (/usr/s390x-linux-gnu/bin/ld -m elf64_s390) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... no checking for egrep... (cached) /usr/bin/grep -E checking for Boost headers version >= 1.34.0... yes checking for Boost's header version... 1_83 checking whether the compiler implements namespaces... yes checking for the toolset name used by Boost for s390x-linux-gnu-g++... configure: WARNING: could not figure out which toolset name to use for s390x-linux-gnu-g++ checking for boost/system/error_code.hpp... yes checking for the Boost system library... yes checking for boost/filesystem/path.hpp... yes checking for the Boost filesystem library... (cached) yes checking for boost/program_options.hpp... yes checking for the Boost program_options library... (cached) yes checking for boost/iostreams/device/file_descriptor.hpp... yes checking for the Boost iostreams library... (cached) yes checking for s390x-linux-gnu-pkg-config... /usr/bin/s390x-linux-gnu-pkg-config checking pkg-config is at least version 0.9.0... yes checking for DEPS... yes checking for sys/types.h... (cached) yes checking for sys/aio.h... no checking for aio.h... yes checking for features.h... yes checking for pthread_mutex_unlock in -lpthread... yes checking for aio_write in -lrt... yes checking for s390x-linux-gnu-doxygen... no checking for doxygen... no configure: WARNING: doxygen not found - will not generate any doxygen documentation checking for s390x-linux-gnu-perl... no checking for perl... /usr/bin/perl checking for an ANSI C-conforming const... yes checking for inline... inline checking how to run the C preprocessor... s390x-linux-gnu-gcc -E checking whether s390x-linux-gnu-gcc needs -traditional... no checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating libMems/Makefile config.status: creating libMems.pc config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands dh_auto_build -a make -j1 make[1]: Entering directory '/<>' make all-recursive make[2]: Entering directory '/<>' Making all in libMems make[3]: Entering directory '/<>/libMems' /bin/bash ../libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -I/usr/include/libGenome -I/usr/include/libMUSCLE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o RepeatHash.lo RepeatHash.cpp libtool: compile: s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -I/usr/include/libGenome -I/usr/include/libMUSCLE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c RepeatHash.cpp -fPIC -DPIC -o .libs/RepeatHash.o In file included from ../libMems/MatchList.h:25, from ../libMems/MatchFinder.h:18, from ../libMems/MemHash.h:20, from ../libMems/RepeatHash.h:16, from RepeatHash.cpp:13: ../libMems/Files.h: In function ‘std::string CreateTempFileName(const std::string&)’: ../libMems/Files.h:82:31: warning: ‘boost::filesystem::path boost::filesystem::path::branch_path() const’ is deprecated: Use path::parent_path() instead [-Wdeprecated-declarations] 82 | dir = path.branch_path().string(); | ~~~~~~~~~~~~~~~~^~ In file included from /usr/include/boost/filesystem/operations.hpp:20, from ../libMems/Files.h:23: /usr/include/boost/filesystem/path.hpp:1129:10: note: declared here 1129 | path branch_path() const { return parent_path(); } | ^~~~~~~~~~~ ../libMems/Files.h:86:25: warning: ‘boost::filesystem::path boost::filesystem::path::leaf() const’ is deprecated: Use path::filename() instead [-Wdeprecated-declarations] 86 | name = path.leaf().string(); | ~~~~~~~~~^~ /usr/include/boost/filesystem/path.hpp:1127:10: note: declared here 1127 | path leaf() const { return filename(); } | ^~~~ libtool: compile: s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -I/usr/include/libGenome -I/usr/include/libMUSCLE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c RepeatHash.cpp -o RepeatHash.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -I/usr/include/libGenome -I/usr/include/libMUSCLE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o DNAFileSML.lo DNAFileSML.cpp libtool: compile: s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -I/usr/include/libGenome -I/usr/include/libMUSCLE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c DNAFileSML.cpp -fPIC -DPIC -o .libs/DNAFileSML.o libtool: compile: s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -I/usr/include/libGenome -I/usr/include/libMUSCLE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c DNAFileSML.cpp -o DNAFileSML.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -I/usr/include/libGenome -I/usr/include/libMUSCLE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o MatchFinder.lo MatchFinder.cpp libtool: compile: s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -I/usr/include/libGenome -I/usr/include/libMUSCLE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c MatchFinder.cpp -fPIC -DPIC -o .libs/MatchFinder.o In file included from ../libMems/MatchList.h:25, from ../libMems/MatchFinder.h:18, from MatchFinder.cpp:13: ../libMems/Files.h: In function ‘std::string CreateTempFileName(const std::string&)’: ../libMems/Files.h:82:31: warning: ‘boost::filesystem::path boost::filesystem::path::branch_path() const’ is deprecated: Use path::parent_path() instead [-Wdeprecated-declarations] 82 | dir = path.branch_path().string(); | ~~~~~~~~~~~~~~~~^~ In file included from /usr/include/boost/filesystem/operations.hpp:20, from ../libMems/Files.h:23: /usr/include/boost/filesystem/path.hpp:1129:10: note: declared here 1129 | path branch_path() const { return parent_path(); } | ^~~~~~~~~~~ ../libMems/Files.h:86:25: warning: ‘boost::filesystem::path boost::filesystem::path::leaf() const’ is deprecated: Use path::filename() instead [-Wdeprecated-declarations] 86 | name = path.leaf().string(); | ~~~~~~~~~^~ /usr/include/boost/filesystem/path.hpp:1127:10: note: declared here 1127 | path leaf() const { return filename(); } | ^~~~ libtool: compile: s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -I/usr/include/libGenome -I/usr/include/libMUSCLE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c MatchFinder.cpp -o MatchFinder.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -I/usr/include/libGenome -I/usr/include/libMUSCLE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o DNAMemorySML.lo DNAMemorySML.cpp libtool: compile: s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -I/usr/include/libGenome -I/usr/include/libMUSCLE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c DNAMemorySML.cpp -fPIC -DPIC -o .libs/DNAMemorySML.o libtool: compile: s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -I/usr/include/libGenome -I/usr/include/libMUSCLE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c DNAMemorySML.cpp -o DNAMemorySML.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -I/usr/include/libGenome -I/usr/include/libMUSCLE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o MemorySML.lo MemorySML.cpp libtool: compile: s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -I/usr/include/libGenome -I/usr/include/libMUSCLE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c MemorySML.cpp -fPIC -DPIC -o .libs/MemorySML.o libtool: compile: s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -I/usr/include/libGenome -I/usr/include/libMUSCLE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c MemorySML.cpp -o MemorySML.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -I/usr/include/libGenome -I/usr/include/libMUSCLE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o SortedMerList.lo SortedMerList.cpp libtool: compile: s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -I/usr/include/libGenome -I/usr/include/libMUSCLE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c SortedMerList.cpp -fPIC -DPIC -o .libs/SortedMerList.o libtool: compile: s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -I/usr/include/libGenome -I/usr/include/libMUSCLE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c SortedMerList.cpp -o SortedMerList.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -I/usr/include/libGenome -I/usr/include/libMUSCLE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o FileSML.lo FileSML.cpp libtool: compile: s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -I/usr/include/libGenome -I/usr/include/libMUSCLE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c FileSML.cpp -fPIC -DPIC -o .libs/FileSML.o In file included from ../libMems/MatchList.h:25, from ../libMems/Aligner.h:19, from FileSML.cpp:12: ../libMems/Files.h: In function ‘std::string CreateTempFileName(const std::string&)’: ../libMems/Files.h:82:31: warning: ‘boost::filesystem::path boost::filesystem::path::branch_path() const’ is deprecated: Use path::parent_path() instead [-Wdeprecated-declarations] 82 | dir = path.branch_path().string(); | ~~~~~~~~~~~~~~~~^~ In file included from /usr/include/boost/filesystem/operations.hpp:20, from ../libMems/Files.h:23: /usr/include/boost/filesystem/path.hpp:1129:10: note: declared here 1129 | path branch_path() const { return parent_path(); } | ^~~~~~~~~~~ ../libMems/Files.h:86:25: warning: ‘boost::filesystem::path boost::filesystem::path::leaf() const’ is deprecated: Use path::filename() instead [-Wdeprecated-declarations] 86 | name = path.leaf().string(); | ~~~~~~~~~^~ /usr/include/boost/filesystem/path.hpp:1127:10: note: declared here 1127 | path leaf() const { return filename(); } | ^~~~ libtool: compile: s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -I/usr/include/libGenome -I/usr/include/libMUSCLE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c FileSML.cpp -o FileSML.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -I/usr/include/libGenome -I/usr/include/libMUSCLE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o MemHash.lo MemHash.cpp libtool: compile: s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -I/usr/include/libGenome -I/usr/include/libMUSCLE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c MemHash.cpp -fPIC -DPIC -o .libs/MemHash.o In file included from ../libMems/MatchList.h:25, from ../libMems/MatchFinder.h:18, from ../libMems/MemHash.h:20, from MemHash.cpp:13: ../libMems/Files.h: In function ‘std::string CreateTempFileName(const std::string&)’: ../libMems/Files.h:82:31: warning: ‘boost::filesystem::path boost::filesystem::path::branch_path() const’ is deprecated: Use path::parent_path() instead [-Wdeprecated-declarations] 82 | dir = path.branch_path().string(); | ~~~~~~~~~~~~~~~~^~ In file included from /usr/include/boost/filesystem/operations.hpp:20, from ../libMems/Files.h:23: /usr/include/boost/filesystem/path.hpp:1129:10: note: declared here 1129 | path branch_path() const { return parent_path(); } | ^~~~~~~~~~~ ../libMems/Files.h:86:25: warning: ‘boost::filesystem::path boost::filesystem::path::leaf() const’ is deprecated: Use path::filename() instead [-Wdeprecated-declarations] 86 | name = path.leaf().string(); | ~~~~~~~~~^~ /usr/include/boost/filesystem/path.hpp:1127:10: note: declared here 1127 | path leaf() const { return filename(); } | ^~~~ libtool: compile: s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -I/usr/include/libGenome -I/usr/include/libMUSCLE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c MemHash.cpp -o MemHash.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -I/usr/include/libGenome -I/usr/include/libMUSCLE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o MatchHashEntry.lo MatchHashEntry.cpp libtool: compile: s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -I/usr/include/libGenome -I/usr/include/libMUSCLE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c MatchHashEntry.cpp -fPIC -DPIC -o .libs/MatchHashEntry.o libtool: compile: s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -I/usr/include/libGenome -I/usr/include/libMUSCLE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c MatchHashEntry.cpp -o MatchHashEntry.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -I/usr/include/libGenome -I/usr/include/libMUSCLE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o Interval.lo Interval.cpp libtool: compile: s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -I/usr/include/libGenome -I/usr/include/libMUSCLE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c Interval.cpp -fPIC -DPIC -o .libs/Interval.o libtool: compile: s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -I/usr/include/libGenome -I/usr/include/libMUSCLE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c Interval.cpp -o Interval.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -I/usr/include/libGenome -I/usr/include/libMUSCLE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o IntervalList.lo IntervalList.cpp libtool: compile: s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -I/usr/include/libGenome -I/usr/include/libMUSCLE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c IntervalList.cpp -fPIC -DPIC -o .libs/IntervalList.o In file included from ../libMems/MatchList.h:25, from ../libMems/MatchFinder.h:18, from ../libMems/MemHash.h:20, from ../libMems/IntervalList.h:23, from IntervalList.cpp:13: ../libMems/Files.h: In function ‘std::string CreateTempFileName(const std::string&)’: ../libMems/Files.h:82:31: warning: ‘boost::filesystem::path boost::filesystem::path::branch_path() const’ is deprecated: Use path::parent_path() instead [-Wdeprecated-declarations] 82 | dir = path.branch_path().string(); | ~~~~~~~~~~~~~~~~^~ In file included from /usr/include/boost/filesystem/operations.hpp:20, from ../libMems/Files.h:23: /usr/include/boost/filesystem/path.hpp:1129:10: note: declared here 1129 | path branch_path() const { return parent_path(); } | ^~~~~~~~~~~ ../libMems/Files.h:86:25: warning: ‘boost::filesystem::path boost::filesystem::path::leaf() const’ is deprecated: Use path::filename() instead [-Wdeprecated-declarations] 86 | name = path.leaf().string(); | ~~~~~~~~~^~ /usr/include/boost/filesystem/path.hpp:1127:10: note: declared here 1127 | path leaf() const { return filename(); } | ^~~~ libtool: compile: s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -I/usr/include/libGenome -I/usr/include/libMUSCLE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c IntervalList.cpp -o IntervalList.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=compile s390x-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -I/usr/include/libGenome -I/usr/include/libMUSCLE -DUSE_POSIX_AIO -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o twister.lo twister.c libtool: compile: s390x-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -I/usr/include/libGenome -I/usr/include/libMUSCLE -DUSE_POSIX_AIO -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c twister.c -fPIC -DPIC -o .libs/twister.o libtool: compile: s390x-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -I/usr/include/libGenome -I/usr/include/libMUSCLE -DUSE_POSIX_AIO -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c twister.c -o twister.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -I/usr/include/libGenome -I/usr/include/libMUSCLE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gnAlignedSequences.lo gnAlignedSequences.cpp libtool: compile: s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -I/usr/include/libGenome -I/usr/include/libMUSCLE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c gnAlignedSequences.cpp -fPIC -DPIC -o .libs/gnAlignedSequences.o libtool: compile: s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -I/usr/include/libGenome -I/usr/include/libMUSCLE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c gnAlignedSequences.cpp -o gnAlignedSequences.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -I/usr/include/libGenome -I/usr/include/libMUSCLE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o MatchList.lo MatchList.cpp libtool: compile: s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -I/usr/include/libGenome -I/usr/include/libMUSCLE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c MatchList.cpp -fPIC -DPIC -o .libs/MatchList.o In file included from ../libMems/MatchList.h:25, from MatchList.cpp:13: ../libMems/Files.h: In function ‘std::string CreateTempFileName(const std::string&)’: ../libMems/Files.h:82:31: warning: ‘boost::filesystem::path boost::filesystem::path::branch_path() const’ is deprecated: Use path::parent_path() instead [-Wdeprecated-declarations] 82 | dir = path.branch_path().string(); | ~~~~~~~~~~~~~~~~^~ In file included from /usr/include/boost/filesystem/operations.hpp:20, from ../libMems/Files.h:23: /usr/include/boost/filesystem/path.hpp:1129:10: note: declared here 1129 | path branch_path() const { return parent_path(); } | ^~~~~~~~~~~ ../libMems/Files.h:86:25: warning: ‘boost::filesystem::path boost::filesystem::path::leaf() const’ is deprecated: Use path::filename() instead [-Wdeprecated-declarations] 86 | name = path.leaf().string(); | ~~~~~~~~~^~ /usr/include/boost/filesystem/path.hpp:1127:10: note: declared here 1127 | path leaf() const { return filename(); } | ^~~~ libtool: compile: s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -I/usr/include/libGenome -I/usr/include/libMUSCLE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c MatchList.cpp -o MatchList.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -I/usr/include/libGenome -I/usr/include/libMUSCLE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o Aligner.lo Aligner.cpp libtool: compile: s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -I/usr/include/libGenome -I/usr/include/libMUSCLE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c Aligner.cpp -fPIC -DPIC -o .libs/Aligner.o In file included from /usr/s390x-linux-gnu/include/c++/13/ext/hash_map:60, from ../libMems/HomologyHMM/dptables.h:43, from ../libMems/HomologyHMM/homology.h:27, from ../libMems/Islands.h:25, from Aligner.cpp:10: /usr/s390x-linux-gnu/include/c++/13/backward/backward_warning.h:32:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated. [-Wcpp] 32 | #warning \ | ^~~~~~~ In file included from ../libMems/MatchList.h:25, from ../libMems/Aligner.h:19, from Aligner.cpp:9: ../libMems/Files.h: In function ‘std::string CreateTempFileName(const std::string&)’: ../libMems/Files.h:82:31: warning: ‘boost::filesystem::path boost::filesystem::path::branch_path() const’ is deprecated: Use path::parent_path() instead [-Wdeprecated-declarations] 82 | dir = path.branch_path().string(); | ~~~~~~~~~~~~~~~~^~ In file included from /usr/include/boost/filesystem/operations.hpp:20, from ../libMems/Files.h:23: /usr/include/boost/filesystem/path.hpp:1129:10: note: declared here 1129 | path branch_path() const { return parent_path(); } | ^~~~~~~~~~~ ../libMems/Files.h:86:25: warning: ‘boost::filesystem::path boost::filesystem::path::leaf() const’ is deprecated: Use path::filename() instead [-Wdeprecated-declarations] 86 | name = path.leaf().string(); | ~~~~~~~~~^~ /usr/include/boost/filesystem/path.hpp:1127:10: note: declared here 1127 | path leaf() const { return filename(); } | ^~~~ In file included from ../libMems/HomologyHMM/homology.h:28: ../libMems/HomologyHMM/algebras.h: In function ‘BFloat double2bfloat(double)’: ../libMems/HomologyHMM/algebras.h:190:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 190 | register BFloat a( 0.0, 0 ); | ^ ../libMems/HomologyHMM/algebras.h: In function ‘BFloat bfloat_pr_product(const BFloat&, const BFloat&)’: ../libMems/HomologyHMM/algebras.h:209:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 209 | register BFloat sf(a.f*b.f,a.e+b.e); | ^~ ../libMems/HomologyHMM/algebras.h: In function ‘BFloat bfloat_pr_double_product(const BFloat&, double)’: ../libMems/HomologyHMM/algebras.h:216:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 216 | register double mantisse = a.f*b; | ^~~~~~~~ ../libMems/HomologyHMM/algebras.h: In function ‘void bfloat_pr_double_product_accum(BFloat&, double)’: ../libMems/HomologyHMM/algebras.h:229:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 229 | register double mantisse = a.f*b; | ^~~~~~~~ ../libMems/HomologyHMM/algebras.h: In function ‘BFloat bfloat_pr_quotient(const BFloat&, const BFloat&)’: ../libMems/HomologyHMM/algebras.h:236:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 236 | register BFloat sf(a.f/b.f, a.e-b.e); | ^~ libtool: compile: s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -I/usr/include/libGenome -I/usr/include/libMUSCLE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c Aligner.cpp -o Aligner.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -I/usr/include/libGenome -I/usr/include/libMUSCLE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o Islands.lo Islands.cpp libtool: compile: s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -I/usr/include/libGenome -I/usr/include/libMUSCLE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c Islands.cpp -fPIC -DPIC -o .libs/Islands.o In file included from /usr/s390x-linux-gnu/include/c++/13/ext/hash_map:60, from ../libMems/HomologyHMM/dptables.h:43, from ../libMems/HomologyHMM/homology.h:27, from ../libMems/Islands.h:25, from Islands.cpp:13: /usr/s390x-linux-gnu/include/c++/13/backward/backward_warning.h:32:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated. [-Wcpp] 32 | #warning \ | ^~~~~~~ In file included from ../libMems/MatchList.h:25, from ../libMems/MatchFinder.h:18, from ../libMems/MemHash.h:20, from ../libMems/IntervalList.h:23, from ../libMems/Islands.h:18: ../libMems/Files.h: In function ‘std::string CreateTempFileName(const std::string&)’: ../libMems/Files.h:82:31: warning: ‘boost::filesystem::path boost::filesystem::path::branch_path() const’ is deprecated: Use path::parent_path() instead [-Wdeprecated-declarations] 82 | dir = path.branch_path().string(); | ~~~~~~~~~~~~~~~~^~ In file included from /usr/include/boost/filesystem/operations.hpp:20, from ../libMems/Files.h:23: /usr/include/boost/filesystem/path.hpp:1129:10: note: declared here 1129 | path branch_path() const { return parent_path(); } | ^~~~~~~~~~~ ../libMems/Files.h:86:25: warning: ‘boost::filesystem::path boost::filesystem::path::leaf() const’ is deprecated: Use path::filename() instead [-Wdeprecated-declarations] 86 | name = path.leaf().string(); | ~~~~~~~~~^~ /usr/include/boost/filesystem/path.hpp:1127:10: note: declared here 1127 | path leaf() const { return filename(); } | ^~~~ In file included from ../libMems/HomologyHMM/homology.h:28: ../libMems/HomologyHMM/algebras.h: In function ‘BFloat double2bfloat(double)’: ../libMems/HomologyHMM/algebras.h:190:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 190 | register BFloat a( 0.0, 0 ); | ^ ../libMems/HomologyHMM/algebras.h: In function ‘BFloat bfloat_pr_product(const BFloat&, const BFloat&)’: ../libMems/HomologyHMM/algebras.h:209:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 209 | register BFloat sf(a.f*b.f,a.e+b.e); | ^~ ../libMems/HomologyHMM/algebras.h: In function ‘BFloat bfloat_pr_double_product(const BFloat&, double)’: ../libMems/HomologyHMM/algebras.h:216:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 216 | register double mantisse = a.f*b; | ^~~~~~~~ ../libMems/HomologyHMM/algebras.h: In function ‘void bfloat_pr_double_product_accum(BFloat&, double)’: ../libMems/HomologyHMM/algebras.h:229:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 229 | register double mantisse = a.f*b; | ^~~~~~~~ ../libMems/HomologyHMM/algebras.h: In function ‘BFloat bfloat_pr_quotient(const BFloat&, const BFloat&)’: ../libMems/HomologyHMM/algebras.h:236:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 236 | register BFloat sf(a.f/b.f, a.e-b.e); | ^~ libtool: compile: s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -I/usr/include/libGenome -I/usr/include/libMUSCLE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c Islands.cpp -o Islands.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -I/usr/include/libGenome -I/usr/include/libMUSCLE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o MaskedMemHash.lo MaskedMemHash.cpp libtool: compile: s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -I/usr/include/libGenome -I/usr/include/libMUSCLE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c MaskedMemHash.cpp -fPIC -DPIC -o .libs/MaskedMemHash.o In file included from ../libMems/MatchList.h:25, from ../libMems/MatchFinder.h:18, from ../libMems/MemHash.h:20, from ../libMems/MaskedMemHash.h:16, from MaskedMemHash.cpp:13: ../libMems/Files.h: In function ‘std::string CreateTempFileName(const std::string&)’: ../libMems/Files.h:82:31: warning: ‘boost::filesystem::path boost::filesystem::path::branch_path() const’ is deprecated: Use path::parent_path() instead [-Wdeprecated-declarations] 82 | dir = path.branch_path().string(); | ~~~~~~~~~~~~~~~~^~ In file included from /usr/include/boost/filesystem/operations.hpp:20, from ../libMems/Files.h:23: /usr/include/boost/filesystem/path.hpp:1129:10: note: declared here 1129 | path branch_path() const { return parent_path(); } | ^~~~~~~~~~~ ../libMems/Files.h:86:25: warning: ‘boost::filesystem::path boost::filesystem::path::leaf() const’ is deprecated: Use path::filename() instead [-Wdeprecated-declarations] 86 | name = path.leaf().string(); | ~~~~~~~~~^~ /usr/include/boost/filesystem/path.hpp:1127:10: note: declared here 1127 | path leaf() const { return filename(); } | ^~~~ libtool: compile: s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -I/usr/include/libGenome -I/usr/include/libMUSCLE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c MaskedMemHash.cpp -o MaskedMemHash.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -I/usr/include/libGenome -I/usr/include/libMUSCLE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o GappedAlignment.lo GappedAlignment.cpp libtool: compile: s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -I/usr/include/libGenome -I/usr/include/libMUSCLE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c GappedAlignment.cpp -fPIC -DPIC -o .libs/GappedAlignment.o libtool: compile: s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -I/usr/include/libGenome -I/usr/include/libMUSCLE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c GappedAlignment.cpp -o GappedAlignment.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -I/usr/include/libGenome -I/usr/include/libMUSCLE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o MuscleInterface.lo MuscleInterface.cpp libtool: compile: s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -I/usr/include/libGenome -I/usr/include/libMUSCLE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c MuscleInterface.cpp -fPIC -DPIC -o .libs/MuscleInterface.o libtool: compile: s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -I/usr/include/libGenome -I/usr/include/libMUSCLE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c MuscleInterface.cpp -o MuscleInterface.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -I/usr/include/libGenome -I/usr/include/libMUSCLE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o PhyloTree.lo PhyloTree.cpp libtool: compile: s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -I/usr/include/libGenome -I/usr/include/libMUSCLE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c PhyloTree.cpp -fPIC -DPIC -o .libs/PhyloTree.o libtool: compile: s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -I/usr/include/libGenome -I/usr/include/libMUSCLE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c PhyloTree.cpp -o PhyloTree.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -I/usr/include/libGenome -I/usr/include/libMUSCLE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o RepeatMatchList.lo RepeatMatchList.cpp libtool: compile: s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -I/usr/include/libGenome -I/usr/include/libMUSCLE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c RepeatMatchList.cpp -fPIC -DPIC -o .libs/RepeatMatchList.o In file included from ../libMems/MatchList.h:25, from ../libMems/RepeatMatchList.h:21, from RepeatMatchList.cpp:13: ../libMems/Files.h: In function ‘std::string CreateTempFileName(const std::string&)’: ../libMems/Files.h:82:31: warning: ‘boost::filesystem::path boost::filesystem::path::branch_path() const’ is deprecated: Use path::parent_path() instead [-Wdeprecated-declarations] 82 | dir = path.branch_path().string(); | ~~~~~~~~~~~~~~~~^~ In file included from /usr/include/boost/filesystem/operations.hpp:20, from ../libMems/Files.h:23: /usr/include/boost/filesystem/path.hpp:1129:10: note: declared here 1129 | path branch_path() const { return parent_path(); } | ^~~~~~~~~~~ ../libMems/Files.h:86:25: warning: ‘boost::filesystem::path boost::filesystem::path::leaf() const’ is deprecated: Use path::filename() instead [-Wdeprecated-declarations] 86 | name = path.leaf().string(); | ~~~~~~~~~^~ /usr/include/boost/filesystem/path.hpp:1127:10: note: declared here 1127 | path leaf() const { return filename(); } | ^~~~ libtool: compile: s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -I/usr/include/libGenome -I/usr/include/libMUSCLE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c RepeatMatchList.cpp -o RepeatMatchList.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -I/usr/include/libGenome -I/usr/include/libMUSCLE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o RepeatMatch.lo RepeatMatch.cpp libtool: compile: s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -I/usr/include/libGenome -I/usr/include/libMUSCLE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c RepeatMatch.cpp -fPIC -DPIC -o .libs/RepeatMatch.o libtool: compile: s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -I/usr/include/libGenome -I/usr/include/libMUSCLE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c RepeatMatch.cpp -o RepeatMatch.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -I/usr/include/libGenome -I/usr/include/libMUSCLE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o Backbone.lo Backbone.cpp libtool: compile: s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -I/usr/include/libGenome -I/usr/include/libMUSCLE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c Backbone.cpp -fPIC -DPIC -o .libs/Backbone.o In file included from /usr/s390x-linux-gnu/include/c++/13/ext/hash_map:60, from ../libMems/HomologyHMM/dptables.h:43, from ../libMems/HomologyHMM/homology.h:27, from ../libMems/Islands.h:25, from ../libMems/ProgressiveAligner.h:21, from Backbone.cpp:13: /usr/s390x-linux-gnu/include/c++/13/backward/backward_warning.h:32:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated. [-Wcpp] 32 | #warning \ | ^~~~~~~ In file included from ../libMems/MatchList.h:25, from ../libMems/Aligner.h:19, from ../libMems/ProgressiveAligner.h:17: ../libMems/Files.h: In function ‘std::string CreateTempFileName(const std::string&)’: ../libMems/Files.h:82:31: warning: ‘boost::filesystem::path boost::filesystem::path::branch_path() const’ is deprecated: Use path::parent_path() instead [-Wdeprecated-declarations] 82 | dir = path.branch_path().string(); | ~~~~~~~~~~~~~~~~^~ In file included from /usr/include/boost/filesystem/operations.hpp:20, from ../libMems/Files.h:23: /usr/include/boost/filesystem/path.hpp:1129:10: note: declared here 1129 | path branch_path() const { return parent_path(); } | ^~~~~~~~~~~ ../libMems/Files.h:86:25: warning: ‘boost::filesystem::path boost::filesystem::path::leaf() const’ is deprecated: Use path::filename() instead [-Wdeprecated-declarations] 86 | name = path.leaf().string(); | ~~~~~~~~~^~ /usr/include/boost/filesystem/path.hpp:1127:10: note: declared here 1127 | path leaf() const { return filename(); } | ^~~~ In file included from ../libMems/HomologyHMM/homology.h:28: ../libMems/HomologyHMM/algebras.h: In function ‘BFloat double2bfloat(double)’: ../libMems/HomologyHMM/algebras.h:190:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 190 | register BFloat a( 0.0, 0 ); | ^ ../libMems/HomologyHMM/algebras.h: In function ‘BFloat bfloat_pr_product(const BFloat&, const BFloat&)’: ../libMems/HomologyHMM/algebras.h:209:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 209 | register BFloat sf(a.f*b.f,a.e+b.e); | ^~ ../libMems/HomologyHMM/algebras.h: In function ‘BFloat bfloat_pr_double_product(const BFloat&, double)’: ../libMems/HomologyHMM/algebras.h:216:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 216 | register double mantisse = a.f*b; | ^~~~~~~~ ../libMems/HomologyHMM/algebras.h: In function ‘void bfloat_pr_double_product_accum(BFloat&, double)’: ../libMems/HomologyHMM/algebras.h:229:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 229 | register double mantisse = a.f*b; | ^~~~~~~~ ../libMems/HomologyHMM/algebras.h: In function ‘BFloat bfloat_pr_quotient(const BFloat&, const BFloat&)’: ../libMems/HomologyHMM/algebras.h:236:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 236 | register BFloat sf(a.f/b.f, a.e-b.e); | ^~ libtool: compile: s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -I/usr/include/libGenome -I/usr/include/libMUSCLE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c Backbone.cpp -o Backbone.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -I/usr/include/libGenome -I/usr/include/libMUSCLE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o PairwiseMatchFinder.lo PairwiseMatchFinder.cpp libtool: compile: s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -I/usr/include/libGenome -I/usr/include/libMUSCLE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c PairwiseMatchFinder.cpp -fPIC -DPIC -o .libs/PairwiseMatchFinder.o In file included from ../libMems/MatchList.h:25, from ../libMems/MatchFinder.h:18, from ../libMems/MemHash.h:20, from ../libMems/PairwiseMatchFinder.h:16, from PairwiseMatchFinder.cpp:13: ../libMems/Files.h: In function ‘std::string CreateTempFileName(const std::string&)’: ../libMems/Files.h:82:31: warning: ‘boost::filesystem::path boost::filesystem::path::branch_path() const’ is deprecated: Use path::parent_path() instead [-Wdeprecated-declarations] 82 | dir = path.branch_path().string(); | ~~~~~~~~~~~~~~~~^~ In file included from /usr/include/boost/filesystem/operations.hpp:20, from ../libMems/Files.h:23: /usr/include/boost/filesystem/path.hpp:1129:10: note: declared here 1129 | path branch_path() const { return parent_path(); } | ^~~~~~~~~~~ ../libMems/Files.h:86:25: warning: ‘boost::filesystem::path boost::filesystem::path::leaf() const’ is deprecated: Use path::filename() instead [-Wdeprecated-declarations] 86 | name = path.leaf().string(); | ~~~~~~~~~^~ /usr/include/boost/filesystem/path.hpp:1127:10: note: declared here 1127 | path leaf() const { return filename(); } | ^~~~ libtool: compile: s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -I/usr/include/libGenome -I/usr/include/libMUSCLE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c PairwiseMatchFinder.cpp -o PairwiseMatchFinder.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -I/usr/include/libGenome -I/usr/include/libMUSCLE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ProgressiveAligner.lo ProgressiveAligner.cpp libtool: compile: s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -I/usr/include/libGenome -I/usr/include/libMUSCLE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ProgressiveAligner.cpp -fPIC -DPIC -o .libs/ProgressiveAligner.o In file included from /usr/s390x-linux-gnu/include/c++/13/ext/hash_map:60, from ../libMems/HomologyHMM/dptables.h:43, from ../libMems/HomologyHMM/homology.h:27, from ../libMems/Islands.h:25, from ../libMems/ProgressiveAligner.h:21, from ProgressiveAligner.cpp:14: /usr/s390x-linux-gnu/include/c++/13/backward/backward_warning.h:32:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated. [-Wcpp] 32 | #warning \ | ^~~~~~~ In file included from ../libMems/MatchList.h:25, from ../libMems/Aligner.h:19, from ../libMems/ProgressiveAligner.h:17: ../libMems/Files.h: In function ‘std::string CreateTempFileName(const std::string&)’: ../libMems/Files.h:82:31: warning: ‘boost::filesystem::path boost::filesystem::path::branch_path() const’ is deprecated: Use path::parent_path() instead [-Wdeprecated-declarations] 82 | dir = path.branch_path().string(); | ~~~~~~~~~~~~~~~~^~ In file included from /usr/include/boost/filesystem/operations.hpp:20, from ../libMems/Files.h:23: /usr/include/boost/filesystem/path.hpp:1129:10: note: declared here 1129 | path branch_path() const { return parent_path(); } | ^~~~~~~~~~~ ../libMems/Files.h:86:25: warning: ‘boost::filesystem::path boost::filesystem::path::leaf() const’ is deprecated: Use path::filename() instead [-Wdeprecated-declarations] 86 | name = path.leaf().string(); | ~~~~~~~~~^~ /usr/include/boost/filesystem/path.hpp:1127:10: note: declared here 1127 | path leaf() const { return filename(); } | ^~~~ In file included from ../libMems/HomologyHMM/homology.h:28: ../libMems/HomologyHMM/algebras.h: In function ‘BFloat double2bfloat(double)’: ../libMems/HomologyHMM/algebras.h:190:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 190 | register BFloat a( 0.0, 0 ); | ^ ../libMems/HomologyHMM/algebras.h: In function ‘BFloat bfloat_pr_product(const BFloat&, const BFloat&)’: ../libMems/HomologyHMM/algebras.h:209:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 209 | register BFloat sf(a.f*b.f,a.e+b.e); | ^~ ../libMems/HomologyHMM/algebras.h: In function ‘BFloat bfloat_pr_double_product(const BFloat&, double)’: ../libMems/HomologyHMM/algebras.h:216:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 216 | register double mantisse = a.f*b; | ^~~~~~~~ ../libMems/HomologyHMM/algebras.h: In function ‘void bfloat_pr_double_product_accum(BFloat&, double)’: ../libMems/HomologyHMM/algebras.h:229:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 229 | register double mantisse = a.f*b; | ^~~~~~~~ ../libMems/HomologyHMM/algebras.h: In function ‘BFloat bfloat_pr_quotient(const BFloat&, const BFloat&)’: ../libMems/HomologyHMM/algebras.h:236:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 236 | register BFloat sf(a.f/b.f, a.e-b.e); | ^~ libtool: compile: s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -I/usr/include/libGenome -I/usr/include/libMUSCLE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ProgressiveAligner.cpp -o ProgressiveAligner.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -I/usr/include/libGenome -I/usr/include/libMUSCLE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o SuperInterval.lo SuperInterval.cpp libtool: compile: s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -I/usr/include/libGenome -I/usr/include/libMUSCLE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c SuperInterval.cpp -fPIC -DPIC -o .libs/SuperInterval.o libtool: compile: s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -I/usr/include/libGenome -I/usr/include/libMUSCLE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c SuperInterval.cpp -o SuperInterval.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -I/usr/include/libGenome -I/usr/include/libMUSCLE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o GreedyBreakpointElimination.lo GreedyBreakpointElimination.cpp libtool: compile: s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -I/usr/include/libGenome -I/usr/include/libMUSCLE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c GreedyBreakpointElimination.cpp -fPIC -DPIC -o .libs/GreedyBreakpointElimination.o In file included from /usr/s390x-linux-gnu/include/c++/13/ext/hash_map:60, from ../libMems/HomologyHMM/dptables.h:43, from ../libMems/HomologyHMM/homology.h:27, from ../libMems/Islands.h:25, from ../libMems/ProgressiveAligner.h:21, from GreedyBreakpointElimination.cpp:7: /usr/s390x-linux-gnu/include/c++/13/backward/backward_warning.h:32:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated. [-Wcpp] 32 | #warning \ | ^~~~~~~ In file included from ../libMems/SeedOccurrenceList.h:9, from ../libMems/GreedyBreakpointElimination.h:13, from GreedyBreakpointElimination.cpp:6: ../libMems/Files.h: In function ‘std::string CreateTempFileName(const std::string&)’: ../libMems/Files.h:82:31: warning: ‘boost::filesystem::path boost::filesystem::path::branch_path() const’ is deprecated: Use path::parent_path() instead [-Wdeprecated-declarations] 82 | dir = path.branch_path().string(); | ~~~~~~~~~~~~~~~~^~ In file included from /usr/include/boost/filesystem.hpp:16, from ../libMems/SeedOccurrenceList.h:7: /usr/include/boost/filesystem/path.hpp:1129:10: note: declared here 1129 | path branch_path() const { return parent_path(); } | ^~~~~~~~~~~ ../libMems/Files.h:86:25: warning: ‘boost::filesystem::path boost::filesystem::path::leaf() const’ is deprecated: Use path::filename() instead [-Wdeprecated-declarations] 86 | name = path.leaf().string(); | ~~~~~~~~~^~ /usr/include/boost/filesystem/path.hpp:1127:10: note: declared here 1127 | path leaf() const { return filename(); } | ^~~~ In file included from ../libMems/HomologyHMM/homology.h:28: ../libMems/HomologyHMM/algebras.h: In function ‘BFloat double2bfloat(double)’: ../libMems/HomologyHMM/algebras.h:190:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 190 | register BFloat a( 0.0, 0 ); | ^ ../libMems/HomologyHMM/algebras.h: In function ‘BFloat bfloat_pr_product(const BFloat&, const BFloat&)’: ../libMems/HomologyHMM/algebras.h:209:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 209 | register BFloat sf(a.f*b.f,a.e+b.e); | ^~ ../libMems/HomologyHMM/algebras.h: In function ‘BFloat bfloat_pr_double_product(const BFloat&, double)’: ../libMems/HomologyHMM/algebras.h:216:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 216 | register double mantisse = a.f*b; | ^~~~~~~~ ../libMems/HomologyHMM/algebras.h: In function ‘void bfloat_pr_double_product_accum(BFloat&, double)’: ../libMems/HomologyHMM/algebras.h:229:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 229 | register double mantisse = a.f*b; | ^~~~~~~~ ../libMems/HomologyHMM/algebras.h: In function ‘BFloat bfloat_pr_quotient(const BFloat&, const BFloat&)’: ../libMems/HomologyHMM/algebras.h:236:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 236 | register BFloat sf(a.f/b.f, a.e-b.e); | ^~ libtool: compile: s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -I/usr/include/libGenome -I/usr/include/libMUSCLE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c GreedyBreakpointElimination.cpp -o GreedyBreakpointElimination.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -I/usr/include/libGenome -I/usr/include/libMUSCLE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o algebras.lo `test -f 'HomologyHMM/algebras.cc' || echo './'`HomologyHMM/algebras.cc libtool: compile: s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -I/usr/include/libGenome -I/usr/include/libMUSCLE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c HomologyHMM/algebras.cc -fPIC -DPIC -o .libs/algebras.o In file included from HomologyHMM/algebras.cc:27: HomologyHMM/algebras.h: In function ‘BFloat double2bfloat(double)’: HomologyHMM/algebras.h:190:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 190 | register BFloat a( 0.0, 0 ); | ^ HomologyHMM/algebras.h: In function ‘BFloat bfloat_pr_product(const BFloat&, const BFloat&)’: HomologyHMM/algebras.h:209:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 209 | register BFloat sf(a.f*b.f,a.e+b.e); | ^~ HomologyHMM/algebras.h: In function ‘BFloat bfloat_pr_double_product(const BFloat&, double)’: HomologyHMM/algebras.h:216:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 216 | register double mantisse = a.f*b; | ^~~~~~~~ HomologyHMM/algebras.h: In function ‘void bfloat_pr_double_product_accum(BFloat&, double)’: HomologyHMM/algebras.h:229:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 229 | register double mantisse = a.f*b; | ^~~~~~~~ HomologyHMM/algebras.h: In function ‘BFloat bfloat_pr_quotient(const BFloat&, const BFloat&)’: HomologyHMM/algebras.h:236:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 236 | register BFloat sf(a.f/b.f, a.e-b.e); | ^~ libtool: compile: s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -I/usr/include/libGenome -I/usr/include/libMUSCLE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c HomologyHMM/algebras.cc -o algebras.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -I/usr/include/libGenome -I/usr/include/libMUSCLE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o homology.lo `test -f 'HomologyHMM/homology.cc' || echo './'`HomologyHMM/homology.cc libtool: compile: s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -I/usr/include/libGenome -I/usr/include/libMUSCLE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c HomologyHMM/homology.cc -fPIC -DPIC -o .libs/homology.o In file included from /usr/s390x-linux-gnu/include/c++/13/ext/hash_map:60, from HomologyHMM/dptables.h:43, from HomologyHMM/homology.h:27, from HomologyHMM/homology.cc:24: /usr/s390x-linux-gnu/include/c++/13/backward/backward_warning.h:32:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated. [-Wcpp] 32 | #warning \ | ^~~~~~~ In file included from HomologyHMM/homology.h:28: HomologyHMM/algebras.h: In function ‘BFloat double2bfloat(double)’: HomologyHMM/algebras.h:190:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 190 | register BFloat a( 0.0, 0 ); | ^ HomologyHMM/algebras.h: In function ‘BFloat bfloat_pr_product(const BFloat&, const BFloat&)’: HomologyHMM/algebras.h:209:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 209 | register BFloat sf(a.f*b.f,a.e+b.e); | ^~ HomologyHMM/algebras.h: In function ‘BFloat bfloat_pr_double_product(const BFloat&, double)’: HomologyHMM/algebras.h:216:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 216 | register double mantisse = a.f*b; | ^~~~~~~~ HomologyHMM/algebras.h: In function ‘void bfloat_pr_double_product_accum(BFloat&, double)’: HomologyHMM/algebras.h:229:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 229 | register double mantisse = a.f*b; | ^~~~~~~~ HomologyHMM/algebras.h: In function ‘BFloat bfloat_pr_quotient(const BFloat&, const BFloat&)’: HomologyHMM/algebras.h:236:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 236 | register BFloat sf(a.f/b.f, a.e-b.e); | ^~ HomologyHMM/homology.cc: In function ‘Algebra Forward(HomologyDPTable**, Params, char*, int)’: HomologyHMM/homology.cc:319:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 319 | register double iTempResult[1]; | ^~~~~~~~~~~ HomologyHMM/homology.cc:321:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 321 | register bfloat iTempProb[1]; | ^~~~~~~~~ HomologyHMM/homology.cc: In function ‘Algebra Backward(HomologyBaumWelch&, HomologyDPTable*, HomologyDPTable**, Params, char*, int)’: HomologyHMM/homology.cc:417:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 417 | register double iTempResult[1]; | ^~~~~~~~~~~ HomologyHMM/homology.cc:419:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 419 | register bfloat iTempProb[3]; | ^~~~~~~~~ HomologyHMM/homology.cc: In function ‘Algebra Viterbi_recurse(HomologyDPTable**, Params, char*, int)’: HomologyHMM/homology.cc:565:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 565 | register double iTempResult[1]; | ^~~~~~~~~~~ HomologyHMM/homology.cc:567:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 567 | register bfloat iTempProb[1]; | ^~~~~~~~~ HomologyHMM/homology.cc: In function ‘Path& Viterbi_trace(HomologyDPTable*, Params, char*, int)’: HomologyHMM/homology.cc:673:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 673 | register double iTempResult[1]; | ^~~~~~~~~~~ libtool: compile: s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -I/usr/include/libGenome -I/usr/include/libMUSCLE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c HomologyHMM/homology.cc -o homology.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -I/usr/include/libGenome -I/usr/include/libMUSCLE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o homologymain.lo `test -f 'HomologyHMM/homologymain.cc' || echo './'`HomologyHMM/homologymain.cc libtool: compile: s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -I/usr/include/libGenome -I/usr/include/libMUSCLE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c HomologyHMM/homologymain.cc -fPIC -DPIC -o .libs/homologymain.o In file included from /usr/s390x-linux-gnu/include/c++/13/ext/hash_map:60, from HomologyHMM/dptables.h:43, from HomologyHMM/homology.h:27, from HomologyHMM/homologymain.cc:21: /usr/s390x-linux-gnu/include/c++/13/backward/backward_warning.h:32:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated. [-Wcpp] 32 | #warning \ | ^~~~~~~ In file included from HomologyHMM/homology.h:28: HomologyHMM/algebras.h: In function ‘BFloat double2bfloat(double)’: HomologyHMM/algebras.h:190:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 190 | register BFloat a( 0.0, 0 ); | ^ HomologyHMM/algebras.h: In function ‘BFloat bfloat_pr_product(const BFloat&, const BFloat&)’: HomologyHMM/algebras.h:209:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 209 | register BFloat sf(a.f*b.f,a.e+b.e); | ^~ HomologyHMM/algebras.h: In function ‘BFloat bfloat_pr_double_product(const BFloat&, double)’: HomologyHMM/algebras.h:216:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 216 | register double mantisse = a.f*b; | ^~~~~~~~ HomologyHMM/algebras.h: In function ‘void bfloat_pr_double_product_accum(BFloat&, double)’: HomologyHMM/algebras.h:229:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 229 | register double mantisse = a.f*b; | ^~~~~~~~ HomologyHMM/algebras.h: In function ‘BFloat bfloat_pr_quotient(const BFloat&, const BFloat&)’: HomologyHMM/algebras.h:236:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 236 | register BFloat sf(a.f/b.f, a.e-b.e); | ^~ libtool: compile: s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -I/usr/include/libGenome -I/usr/include/libMUSCLE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c HomologyHMM/homologymain.cc -o homologymain.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=compile s390x-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -I/usr/include/libGenome -I/usr/include/libMUSCLE -DUSE_POSIX_AIO -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o asyncio.lo `test -f 'dmSML/asyncio.c' || echo './'`dmSML/asyncio.c libtool: compile: s390x-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -I/usr/include/libGenome -I/usr/include/libMUSCLE -DUSE_POSIX_AIO -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c dmSML/asyncio.c -fPIC -DPIC -o .libs/asyncio.o libtool: compile: s390x-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -I/usr/include/libGenome -I/usr/include/libMUSCLE -DUSE_POSIX_AIO -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c dmSML/asyncio.c -o asyncio.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=compile s390x-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -I/usr/include/libGenome -I/usr/include/libMUSCLE -DUSE_POSIX_AIO -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o alinuxaio.lo `test -f 'dmSML/alinuxaio.c' || echo './'`dmSML/alinuxaio.c libtool: compile: s390x-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -I/usr/include/libGenome -I/usr/include/libMUSCLE -DUSE_POSIX_AIO -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c dmSML/alinuxaio.c -fPIC -DPIC -o .libs/alinuxaio.o libtool: compile: s390x-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -I/usr/include/libGenome -I/usr/include/libMUSCLE -DUSE_POSIX_AIO -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c dmSML/alinuxaio.c -o alinuxaio.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=compile s390x-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -I/usr/include/libGenome -I/usr/include/libMUSCLE -DUSE_POSIX_AIO -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o aPOSIXaio.lo `test -f 'dmSML/aPOSIXaio.c' || echo './'`dmSML/aPOSIXaio.c libtool: compile: s390x-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -I/usr/include/libGenome -I/usr/include/libMUSCLE -DUSE_POSIX_AIO -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c dmSML/aPOSIXaio.c -fPIC -DPIC -o .libs/aPOSIXaio.o dmSML/aPOSIXaio.c: In function ‘QueryLastCompletePAIO’: dmSML/aPOSIXaio.c:115:28: warning: passing argument 1 of ‘aio_suspend’ from incompatible pointer type [-Wincompatible-pointer-types] 115 | rval = aio_suspend(request_array, 1, &zero_wait); | ^~~~~~~~~~~~~ | | | struct aiocb ** In file included from /usr/s390x-linux-gnu/include/features.h:490, from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../libMems/dmSML/asyncio.h:24, from ../libMems/dmSML/aPOSIXaio.h:8, from dmSML/aPOSIXaio.c:5: /usr/s390x-linux-gnu/include/aio.h:202:12: note: expected ‘const struct aiocb * const*’ but argument is of type ‘struct aiocb **’ 202 | extern int __REDIRECT_NTH (aio_suspend, | ^~~~~~~~~~~~~~ libtool: compile: s390x-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -I/usr/include/libGenome -I/usr/include/libMUSCLE -DUSE_POSIX_AIO -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c dmSML/aPOSIXaio.c -o aPOSIXaio.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=compile s390x-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -I/usr/include/libGenome -I/usr/include/libMUSCLE -DUSE_POSIX_AIO -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o alibc.lo `test -f 'dmSML/alibc.c' || echo './'`dmSML/alibc.c libtool: compile: s390x-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -I/usr/include/libGenome -I/usr/include/libMUSCLE -DUSE_POSIX_AIO -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c dmSML/alibc.c -fPIC -DPIC -o .libs/alibc.o libtool: compile: s390x-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -I/usr/include/libGenome -I/usr/include/libMUSCLE -DUSE_POSIX_AIO -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c dmSML/alibc.c -o alibc.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=compile s390x-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -I/usr/include/libGenome -I/usr/include/libMUSCLE -DUSE_POSIX_AIO -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o awin32aio.lo `test -f 'dmSML/awin32aio.c' || echo './'`dmSML/awin32aio.c libtool: compile: s390x-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -I/usr/include/libGenome -I/usr/include/libMUSCLE -DUSE_POSIX_AIO -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c dmSML/awin32aio.c -fPIC -DPIC -o .libs/awin32aio.o libtool: compile: s390x-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -I/usr/include/libGenome -I/usr/include/libMUSCLE -DUSE_POSIX_AIO -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c dmSML/awin32aio.c -o awin32aio.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=compile s390x-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -I/usr/include/libGenome -I/usr/include/libMUSCLE -DUSE_POSIX_AIO -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o buffer.lo `test -f 'dmSML/buffer.c' || echo './'`dmSML/buffer.c libtool: compile: s390x-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -I/usr/include/libGenome -I/usr/include/libMUSCLE -DUSE_POSIX_AIO -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c dmSML/buffer.c -fPIC -DPIC -o .libs/buffer.o libtool: compile: s390x-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -I/usr/include/libGenome -I/usr/include/libMUSCLE -DUSE_POSIX_AIO -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c dmSML/buffer.c -o buffer.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=compile s390x-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -I/usr/include/libGenome -I/usr/include/libMUSCLE -DUSE_POSIX_AIO -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o util.lo `test -f 'dmSML/util.c' || echo './'`dmSML/util.c libtool: compile: s390x-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -I/usr/include/libGenome -I/usr/include/libMUSCLE -DUSE_POSIX_AIO -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c dmSML/util.c -fPIC -DPIC -o .libs/util.o dmSML/util.c: In function ‘removeFile’: dmSML/util.c:127:24: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 127 | rm_cmd = Fmt( "/bin/rm -fv %s", filename ); | ^ dmSML/util.c:129:24: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 129 | rm_cmd = Fmt( "/bin/rm -f %s", filename ); | ^ libtool: compile: s390x-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -I/usr/include/libGenome -I/usr/include/libMUSCLE -DUSE_POSIX_AIO -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c dmSML/util.c -o util.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=compile s390x-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -I/usr/include/libGenome -I/usr/include/libMUSCLE -DUSE_POSIX_AIO -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sorting.lo `test -f 'dmSML/sorting.c' || echo './'`dmSML/sorting.c libtool: compile: s390x-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -I/usr/include/libGenome -I/usr/include/libMUSCLE -DUSE_POSIX_AIO -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c dmSML/sorting.c -fPIC -DPIC -o .libs/sorting.o libtool: compile: s390x-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -I/usr/include/libGenome -I/usr/include/libMUSCLE -DUSE_POSIX_AIO -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c dmSML/sorting.c -o sorting.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=compile s390x-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -I/usr/include/libGenome -I/usr/include/libMUSCLE -DUSE_POSIX_AIO -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o dmsort.lo `test -f 'dmSML/dmsort.c' || echo './'`dmSML/dmsort.c libtool: compile: s390x-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -I/usr/include/libGenome -I/usr/include/libMUSCLE -DUSE_POSIX_AIO -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c dmSML/dmsort.c -fPIC -DPIC -o .libs/dmsort.o libtool: compile: s390x-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -I/usr/include/libGenome -I/usr/include/libMUSCLE -DUSE_POSIX_AIO -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c dmSML/dmsort.c -o dmsort.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=compile s390x-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -I/usr/include/libGenome -I/usr/include/libMUSCLE -DUSE_POSIX_AIO -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o timing.lo `test -f 'dmSML/timing.c' || echo './'`dmSML/timing.c libtool: compile: s390x-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -I/usr/include/libGenome -I/usr/include/libMUSCLE -DUSE_POSIX_AIO -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c dmSML/timing.c -fPIC -DPIC -o .libs/timing.o libtool: compile: s390x-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -I/usr/include/libGenome -I/usr/include/libMUSCLE -DUSE_POSIX_AIO -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c dmSML/timing.c -o timing.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=compile s390x-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -I/usr/include/libGenome -I/usr/include/libMUSCLE -DUSE_POSIX_AIO -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sml.lo `test -f 'dmSML/sml.c' || echo './'`dmSML/sml.c libtool: compile: s390x-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -I/usr/include/libGenome -I/usr/include/libMUSCLE -DUSE_POSIX_AIO -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c dmSML/sml.c -fPIC -DPIC -o .libs/sml.o libtool: compile: s390x-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -I/usr/include/libGenome -I/usr/include/libMUSCLE -DUSE_POSIX_AIO -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c dmSML/sml.c -o sml.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=link s390x-linux-gnu-g++ -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -I/usr/include/libGenome -I/usr/include/libMUSCLE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -version-info 1:0:0 -Wl,-z,relro -Wl,-z,now -o libMems.la -rpath /usr/lib/s390x-linux-gnu RepeatHash.lo DNAFileSML.lo MatchFinder.lo DNAMemorySML.lo MemorySML.lo SortedMerList.lo FileSML.lo MemHash.lo MatchHashEntry.lo Interval.lo IntervalList.lo twister.lo gnAlignedSequences.lo MatchList.lo Aligner.lo Islands.lo MaskedMemHash.lo GappedAlignment.lo MuscleInterface.lo PhyloTree.lo RepeatMatchList.lo RepeatMatch.lo Backbone.lo PairwiseMatchFinder.lo ProgressiveAligner.lo SuperInterval.lo GreedyBreakpointElimination.lo algebras.lo homology.lo homologymain.lo asyncio.lo alinuxaio.lo aPOSIXaio.lo alibc.lo awin32aio.lo buffer.lo util.lo sorting.lo dmsort.lo timing.lo sml.lo -lGenome -lMUSCLE -lboost_filesystem -lboost_iostreams -lboost_system -lrt -lpthread libtool: link: s390x-linux-gnu-g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc-cross/s390x-linux-gnu/13/../../../../s390x-linux-gnu/lib/../lib/crti.o /usr/lib/gcc-cross/s390x-linux-gnu/13/crtbeginS.o .libs/RepeatHash.o .libs/DNAFileSML.o .libs/MatchFinder.o .libs/DNAMemorySML.o .libs/MemorySML.o .libs/SortedMerList.o .libs/FileSML.o .libs/MemHash.o .libs/MatchHashEntry.o .libs/Interval.o .libs/IntervalList.o .libs/twister.o .libs/gnAlignedSequences.o .libs/MatchList.o .libs/Aligner.o .libs/Islands.o .libs/MaskedMemHash.o .libs/GappedAlignment.o .libs/MuscleInterface.o .libs/PhyloTree.o .libs/RepeatMatchList.o .libs/RepeatMatch.o .libs/Backbone.o .libs/PairwiseMatchFinder.o .libs/ProgressiveAligner.o .libs/SuperInterval.o .libs/GreedyBreakpointElimination.o .libs/algebras.o .libs/homology.o .libs/homologymain.o .libs/asyncio.o .libs/alinuxaio.o .libs/aPOSIXaio.o .libs/alibc.o .libs/awin32aio.o .libs/buffer.o .libs/util.o .libs/sorting.o .libs/dmsort.o .libs/timing.o .libs/sml.o -lGenome -lMUSCLE -lboost_filesystem -lboost_iostreams -lboost_system -lrt -lpthread -L/usr/lib/gcc-cross/s390x-linux-gnu/13 -L/usr/lib/gcc-cross/s390x-linux-gnu/13/../../../../s390x-linux-gnu/lib/../lib -L/lib/s390x-linux-gnu -L/lib/../lib -L/usr/lib/s390x-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc-cross/s390x-linux-gnu/13/../../../../s390x-linux-gnu/lib -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc-cross/s390x-linux-gnu/13/crtendS.o /usr/lib/gcc-cross/s390x-linux-gnu/13/../../../../s390x-linux-gnu/lib/../lib/crtn.o -O2 -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,libMems.so.1 -o .libs/libMems.so.1.0.0 libtool: link: (cd ".libs" && rm -f "libMems.so.1" && ln -s "libMems.so.1.0.0" "libMems.so.1") libtool: link: (cd ".libs" && rm -f "libMems.so" && ln -s "libMems.so.1.0.0" "libMems.so") libtool: link: s390x-linux-gnu-ar cr .libs/libMems.a RepeatHash.o DNAFileSML.o MatchFinder.o DNAMemorySML.o MemorySML.o SortedMerList.o FileSML.o MemHash.o MatchHashEntry.o Interval.o IntervalList.o twister.o gnAlignedSequences.o MatchList.o Aligner.o Islands.o MaskedMemHash.o GappedAlignment.o MuscleInterface.o PhyloTree.o RepeatMatchList.o RepeatMatch.o Backbone.o PairwiseMatchFinder.o ProgressiveAligner.o SuperInterval.o GreedyBreakpointElimination.o algebras.o homology.o homologymain.o asyncio.o alinuxaio.o aPOSIXaio.o alibc.o awin32aio.o buffer.o util.o sorting.o dmsort.o timing.o sml.o libtool: link: s390x-linux-gnu-ranlib .libs/libMems.a libtool: link: ( cd ".libs" && rm -f "libMems.la" && ln -s "../libMems.la" "libMems.la" ) make[3]: Leaving directory '/<>/libMems' make[3]: Entering directory '/<>' make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' dh: command-omitted: The call to "dh_auto_test -a" was omitted due to "DEB_BUILD_OPTIONS=nocheck" create-stamp debian/debhelper-build-stamp dh_prep -a dh_auto_install -a make -j1 install DESTDIR=/<>/libmems-1.6.0\+4725/debian/tmp AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/<>' Making install in libMems make[2]: Entering directory '/<>/libMems' make[3]: Entering directory '/<>/libMems' /usr/bin/mkdir -p '/<>/debian/tmp/usr/lib/s390x-linux-gnu' /bin/bash ../libtool --mode=install /usr/bin/install -c libMems.la '/<>/debian/tmp/usr/lib/s390x-linux-gnu' libtool: install: /usr/bin/install -c .libs/libMems.so.1.0.0 /<>/debian/tmp/usr/lib/s390x-linux-gnu/libMems.so.1.0.0 libtool: install: (cd /<>/debian/tmp/usr/lib/s390x-linux-gnu && { ln -s -f libMems.so.1.0.0 libMems.so.1 || { rm -f libMems.so.1 && ln -s libMems.so.1.0.0 libMems.so.1; }; }) libtool: install: (cd /<>/debian/tmp/usr/lib/s390x-linux-gnu && { ln -s -f libMems.so.1.0.0 libMems.so || { rm -f libMems.so && ln -s libMems.so.1.0.0 libMems.so; }; }) libtool: install: /usr/bin/install -c .libs/libMems.lai /<>/debian/tmp/usr/lib/s390x-linux-gnu/libMems.la libtool: install: /usr/bin/install -c .libs/libMems.a /<>/debian/tmp/usr/lib/s390x-linux-gnu/libMems.a libtool: install: chmod 644 /<>/debian/tmp/usr/lib/s390x-linux-gnu/libMems.a libtool: install: s390x-linux-gnu-ranlib /<>/debian/tmp/usr/lib/s390x-linux-gnu/libMems.a libtool: warning: remember to run 'libtool --finish /usr/lib/s390x-linux-gnu' /usr/bin/mkdir -p '/<>/debian/tmp/usr/include/libMems/dmSML' /usr/bin/install -c -m 644 dmSML/asyncio.h dmSML/alinuxaio.h dmSML/aPOSIXaio.h dmSML/alibc.h dmSML/awin32aio.h dmSML/buffer.h dmSML/util.h dmSML/sorting.h dmSML/dmsort.h dmSML/timing.h dmSML/sml.h '/<>/debian/tmp/usr/include/libMems/dmSML' /usr/bin/mkdir -p '/<>/debian/tmp/usr/include/libMems/HomologyHMM' /usr/bin/install -c -m 644 HomologyHMM/homology.h HomologyHMM/dptables.h HomologyHMM/algebras.h HomologyHMM/parameters.h '/<>/debian/tmp/usr/include/libMems/HomologyHMM' /usr/bin/mkdir -p '/<>/debian/tmp/usr/include/libMems' /usr/bin/install -c -m 644 RepeatHash.h MatchHashEntry.h DNAFileSML.h MemorySML.h MatchProjectionAdapter.h DNAMemorySML.h MatchFinder.h SortedMerList.h IntervalList.h FileSML.h gnAlignedSequences.h Interval.h MemHash.h AbstractMatch.h SlotAllocator.h Aligner.h Match.h MatchList.h Matrix.h NumericMatrix.h Islands.h MaskedMemHash.h SeedMasks.h GappedAlignment.h MuscleInterface.h GappedAligner.h PhyloTree.h SparseAbstractMatch.h DenseAbstractMatch.h RepeatMatch.h UngappedLocalAlignment.h AbstractGappedAlignment.h CompactGappedAlignment.h HybridAbstractMatch.h twister.h SubstitutionMatrix.h RepeatMatchList.h Backbone.h ProgressiveAligner.h PairwiseMatchAdapter.h '/<>/debian/tmp/usr/include/libMems' /usr/bin/install -c -m 644 PairwiseMatchFinder.h SeedOccurrenceList.h TreeUtilities.h SuperInterval.h GreedyBreakpointElimination.h LCB.h DistanceMatrix.h Scoring.h configuration.h Memory.h Files.h gnRAWSequence.h '/<>/debian/tmp/usr/include/libMems' make[3]: Leaving directory '/<>/libMems' make[2]: Leaving directory '/<>/libMems' make[2]: Entering directory '/<>' make[3]: Entering directory '/<>' make[3]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/<>/debian/tmp/usr/lib/s390x-linux-gnu/pkgconfig' /usr/bin/install -c -m 644 libMems.pc '/<>/debian/tmp/usr/lib/s390x-linux-gnu/pkgconfig' make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' debian/rules override_dh_install make[1]: Entering directory '/<>' dh_install d-shlibmove --commit \ --t64 \ --multiarch \ --devunversioned \ --exclude-la \ --override s/libGenome0-dev/libgenome-dev/ \ --override s/libMUSCLE1-dev/libmuscle-dev/ \ --movedev debian/tmp/usr/include usr \ --movedev "debian/tmp/usr/lib/*/pkgconfig/*.pc" usr/lib/s390x-linux-gnu/pkgconfig \ debian/tmp/usr/lib/*/*.so Library package automatic movement utility --> libboost-filesystem1.83-dev package exists. --> libboost-iostreams1.83-dev package exists. --> libgenome-dev package exists. --> libmuscle-dev package exists. set -e install -d -m 755 debian/libmems-dev/usr/lib/s390x-linux-gnu install -d -m 755 debian/libmems1t64/usr/lib/s390x-linux-gnu mv debian/tmp/usr/lib/s390x-linux-gnu/libMems.a debian/libmems-dev/usr/lib/s390x-linux-gnu mv debian/tmp/usr/lib/s390x-linux-gnu/libMems.so debian/libmems-dev/usr/lib/s390x-linux-gnu mv /<>/debian/tmp/usr/lib/s390x-linux-gnu/libMems.so.1 debian/libmems1t64/usr/lib/s390x-linux-gnu mv /<>/debian/tmp/usr/lib/s390x-linux-gnu/libMems.so.1.0.0 debian/libmems1t64/usr/lib/s390x-linux-gnu PKGDEV=libmems-dev PKGSHL=libmems1t64 install -d -m 755 debian/libmems-dev/usr mv debian/tmp/usr/include debian/libmems-dev/usr install -d -m 755 debian/libmems-dev/usr/lib/s390x-linux-gnu/pkgconfig mv debian/tmp/usr/lib/*/pkgconfig/*.pc debian/libmems-dev/usr/lib/s390x-linux-gnu/pkgconfig find debian -name "lib*.la" -delete make[1]: Leaving directory '/<>' dh_installdocs -a dh_installchangelogs -a dh_lintian -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'libmems-dev' in '../libmems-dev_1.6.0+4725-10_s390x.deb'. dpkg-deb: building package 'libmems1t64' in '../libmems1t64_1.6.0+4725-10_s390x.deb'. dpkg-deb: building package 'libmems1t64-dbgsym' in '../libmems1t64-dbgsym_1.6.0+4725-10_s390x.deb'. dpkg-genbuildinfo --build=any -O../libmems_1.6.0+4725-10_s390x.buildinfo dpkg-genchanges --build=any -O../libmems_1.6.0+4725-10_s390x.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2024-04-01T09:13:16Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ libmems_1.6.0+4725-10_s390x.changes: ------------------------------------ Format: 1.8 Date: Sun, 10 Mar 2024 14:24:52 +0100 Source: libmems Binary: libmems-dev libmems1t64 libmems1t64-dbgsym Built-For-Profiles: cross nocheck Architecture: s390x Version: 1.6.0+4725-10 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Étienne Mollier Description: libmems-dev - development library to support DNA string matching and comparativ libmems1t64 - library to support DNA string matching and comparative genomics Closes: 1065765 Changes: libmems (1.6.0+4725-10) unstable; urgency=medium . * fix-system.patch: new: fix build failure on arm. (Closes: #1065765) * d/control: add myself to uploaders. Checksums-Sha1: 50b9cbea2b5454f15d284f2ffef7606333a19f2a 852012 libmems-dev_1.6.0+4725-10_s390x.deb ab1696617841c9ea82477f2eee7eeccb77db9304 10779496 libmems1t64-dbgsym_1.6.0+4725-10_s390x.deb 993f088f06c6c301533c1d4315eb4aaadfde7752 577456 libmems1t64_1.6.0+4725-10_s390x.deb 1ca78745f0f0cb182cd2a264f463d3f0331dd62e 6988 libmems_1.6.0+4725-10_s390x.buildinfo Checksums-Sha256: 41db4029d834c56a43e4ed2e884987063c4bdff258a139fd54c189f725cbb1eb 852012 libmems-dev_1.6.0+4725-10_s390x.deb 2e092f0167af5451b88e65993a66d83f630b65ce6a3c79a7f66cda988e76a9b2 10779496 libmems1t64-dbgsym_1.6.0+4725-10_s390x.deb 60ccfa5ac496f96673ae57f858eac3c1508ca0dae3962a346b3da416d0cb7f0f 577456 libmems1t64_1.6.0+4725-10_s390x.deb a19e5895ccc9fa0688ada608a6914f044cc0a05010c0b34044986a92dbb12809 6988 libmems_1.6.0+4725-10_s390x.buildinfo Files: 445b951738d42db37335f5b16c059f90 852012 libdevel optional libmems-dev_1.6.0+4725-10_s390x.deb 386b5c8c3c8f4fdc1890a193fdf4966c 10779496 debug optional libmems1t64-dbgsym_1.6.0+4725-10_s390x.deb 76f7c0573d1cefdcbc94937739ceea52 577456 libs optional libmems1t64_1.6.0+4725-10_s390x.deb 39a7f949afb850929ebb32ce27f1c001 6988 science optional libmems_1.6.0+4725-10_s390x.buildinfo +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: libmems Binary: libmems-dev libmems1t64 libmems1t64-dbgsym Architecture: s390x Version: 1.6.0+4725-10 Checksums-Md5: 445b951738d42db37335f5b16c059f90 852012 libmems-dev_1.6.0+4725-10_s390x.deb 386b5c8c3c8f4fdc1890a193fdf4966c 10779496 libmems1t64-dbgsym_1.6.0+4725-10_s390x.deb 76f7c0573d1cefdcbc94937739ceea52 577456 libmems1t64_1.6.0+4725-10_s390x.deb Checksums-Sha1: 50b9cbea2b5454f15d284f2ffef7606333a19f2a 852012 libmems-dev_1.6.0+4725-10_s390x.deb ab1696617841c9ea82477f2eee7eeccb77db9304 10779496 libmems1t64-dbgsym_1.6.0+4725-10_s390x.deb 993f088f06c6c301533c1d4315eb4aaadfde7752 577456 libmems1t64_1.6.0+4725-10_s390x.deb Checksums-Sha256: 41db4029d834c56a43e4ed2e884987063c4bdff258a139fd54c189f725cbb1eb 852012 libmems-dev_1.6.0+4725-10_s390x.deb 2e092f0167af5451b88e65993a66d83f630b65ce6a3c79a7f66cda988e76a9b2 10779496 libmems1t64-dbgsym_1.6.0+4725-10_s390x.deb 60ccfa5ac496f96673ae57f858eac3c1508ca0dae3962a346b3da416d0cb7f0f 577456 libmems1t64_1.6.0+4725-10_s390x.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Mon, 01 Apr 2024 09:13:15 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs Installed-Build-Depends: adduser (= 3.137), apt (= 2.7.14), autoconf (= 2.71-3), automake (= 1:1.16.5-1.3), autopoint (= 0.21-14), autotools-dev (= 20220109.1), base-files (= 13), base-passwd (= 3.6.3), bash (= 5.2.21-2), binutils (= 2.42-4), binutils-common (= 2.42-4), binutils-x86-64-linux-gnu (= 2.42-4), bsdextrautils (= 2.39.3-11), bsdutils (= 1:2.39.3-11), build-essential (= 12.10), bzip2 (= 1.0.8-5.1), coreutils (= 9.4-3.1), cpp (= 4:13.2.0-7), cpp-13 (= 13.2.0-23), cpp-13-x86-64-linux-gnu (= 13.2.0-23), cpp-x86-64-linux-gnu (= 4:13.2.0-7), d-shlibs (= 0.106), dash (= 0.5.12-6), debconf (= 1.5.86), debhelper (= 13.15.3), debian-archive-keyring (= 2023.4), debianutils (= 5.17), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.13.1-1), diffutils (= 1:3.10-1), dpkg (= 1.22.6), dpkg-dev (= 1.22.6), dwz (= 0.15-1+b1), file (= 1:5.45-3), findutils (= 4.9.0-5), g++ (= 4:13.2.0-7), g++-13 (= 13.2.0-23), g++-13-x86-64-linux-gnu (= 13.2.0-23), g++-x86-64-linux-gnu (= 4:13.2.0-7), gcc (= 4:13.2.0-7), gcc-13 (= 13.2.0-23), gcc-13-base (= 13.2.0-23), gcc-13-x86-64-linux-gnu (= 13.2.0-23), gcc-14-base (= 14-20240330-1), gcc-x86-64-linux-gnu (= 4:13.2.0-7), gettext (= 0.21-14+b1), gettext-base (= 0.21-14+b1), gpgv (= 2.2.40-3), grep (= 3.11-4), groff-base (= 1.23.0-3+b1), gzip (= 1.12-1.1), hostname (= 3.23+nmu2), icu-devtools (= 72.1-4+b1), init-system-helpers (= 1.66), intltool-debian (= 0.35.0+20060710.6), libacl1 (= 2.3.2-1), libapt-pkg6.0t64 (= 2.7.14), libarchive-zip-perl (= 1.68-1), libasan8 (= 14-20240330-1), libatomic1 (= 14-20240330-1), libattr1 (= 1:2.5.2-1), libaudit-common (= 1:3.1.2-2.1), libaudit1 (= 1:3.1.2-2.1), libbinutils (= 2.42-4), libblkid1 (= 2.39.3-11), libboost-atomic1.83-dev (= 1.83.0-2.1+b1), libboost-atomic1.83.0 (= 1.83.0-2.1+b1), libboost-filesystem-dev (= 1.83.0.2+b2), libboost-filesystem1.83-dev (= 1.83.0-2.1+b1), libboost-filesystem1.83.0 (= 1.83.0-2.1+b1), libboost-iostreams-dev (= 1.83.0.2+b2), libboost-iostreams1.83-dev (= 1.83.0-2.1+b1), libboost-iostreams1.83.0 (= 1.83.0-2.1+b1), libboost-program-options-dev (= 1.83.0.2+b2), libboost-program-options1.83-dev (= 1.83.0-2.1+b1), libboost-program-options1.83.0 (= 1.83.0-2.1+b1), libboost-regex1.83-dev (= 1.83.0-2.1+b1), libboost-regex1.83.0 (= 1.83.0-2.1+b1), libboost-system1.83-dev (= 1.83.0-2.1+b1), libboost-system1.83.0 (= 1.83.0-2.1+b1), libboost1.83-dev (= 1.83.0-2.1+b1), libbz2-1.0 (= 1.0.8-5.1), libc-bin (= 2.37-15.1), libc-dev-bin (= 2.37-15.1), libc6 (= 2.37-15.1), libc6-dev (= 2.37-15.1), libcap-ng0 (= 0.8.4-2), libcap2 (= 1:2.66-5), libcc1-0 (= 14-20240330-1), libcrypt-dev (= 1:4.4.36-4), libcrypt1 (= 1:4.4.36-4), libctf-nobfd0 (= 2.42-4), libctf0 (= 2.42-4), libdb5.3t64 (= 5.3.28+dfsg2-6), libdebconfclient0 (= 0.271+b3), libdebhelper-perl (= 13.15.3), libdpkg-perl (= 1.22.6), libelf1t64 (= 0.191-1), libffi8 (= 3.4.6-1), libfile-stripnondeterminism-perl (= 1.13.1-1), libgcc-13-dev (= 13.2.0-23), libgcc-s1 (= 14-20240330-1), libgcrypt20 (= 1.10.3-2), libgdbm-compat4t64 (= 1.23-5.1+b1), libgdbm6t64 (= 1.23-5.1+b1), libgenome-dev (= 1.3.11+svn20110227.4616-6), libgenome0 (= 1.3.11+svn20110227.4616-6), libgmp10 (= 2:6.3.0+dfsg-2+b1), libgnutls30t64 (= 3.8.4-2), libgomp1 (= 14-20240330-1), libgpg-error0 (= 1.47-3), libgprofng0 (= 2.42-4), libhogweed6t64 (= 3.9.1-2.2), libhwasan0 (= 14-20240330-1), libicu-dev (= 72.1-4+b1), libicu72 (= 72.1-4+b1), libidn2-0 (= 2.3.7-2), libisl23 (= 0.26-3+b2), libitm1 (= 14-20240330-1), libjansson4 (= 2.14-2+b2), liblsan0 (= 14-20240330-1), liblz4-1 (= 1.9.4-1+b2), liblzma5 (= 5.6.1+really5.4.5-1), libmagic-mgc (= 1:5.45-3), libmagic1t64 (= 1:5.45-3), libmd0 (= 1.1.0-2), libmount1 (= 2.39.3-11), libmpc3 (= 1.3.1-1+b2), libmpfr6 (= 4.2.1-1+b1), libmuscle-dev (= 3.7+4565-7), libmuscle1 (= 3.7+4565-7), libnettle8t64 (= 3.9.1-2.2), libp11-kit0 (= 0.25.3-4), libpam-modules (= 1.5.3-6), libpam-modules-bin (= 1.5.3-6), libpam-runtime (= 1.5.3-6), libpam0t64 (= 1.5.3-4), libpcre2-8-0 (= 10.42-4+b1), libperl5.38t64 (= 5.38.2-3.2), libpipeline1 (= 1.5.7-2), libpkgconf3 (= 1.8.1-1+b2), libquadmath0 (= 14-20240330-1), libseccomp2 (= 2.5.5-1), libselinux1 (= 3.5-2+b1), libsemanage-common (= 3.5-1), libsemanage2 (= 3.5-1+b3), libsepol2 (= 3.5-2), libsframe1 (= 2.42-4), libsmartcols1 (= 2.39.3-11), libssl3t64 (= 3.1.5-1.1), libstdc++-13-dev (= 13.2.0-23), libstdc++6 (= 14-20240330-1), libsub-override-perl (= 0.10-1), libsystemd0 (= 255.4-1+b1), libtasn1-6 (= 4.19.0-3+b2), libtinfo6 (= 6.4+20240113-1), libtool (= 2.4.7-7), libtsan2 (= 14-20240330-1), libubsan1 (= 14-20240330-1), libuchardet0 (= 0.0.8-1+b1), libudev1 (= 255.4-1+b1), libunistring5 (= 1.2-1), libuuid1 (= 2.39.3-11), libxml2 (= 2.9.14+dfsg-1.3+b2), libxxhash0 (= 0.8.2-2+b1), libzstd1 (= 1.5.5+dfsg2-2), linux-libc-dev (= 6.7.9-2), login (= 1:4.13+dfsg1-4), m4 (= 1.4.19-4), make (= 4.3-4.1), man-db (= 2.12.0-4), mawk (= 1.3.4.20240123-1), ncurses-base (= 6.4+20240113-1), ncurses-bin (= 6.4+20240113-1), passwd (= 1:4.13+dfsg1-4), patch (= 2.7.6-7), perl (= 5.38.2-3.2), perl-base (= 5.38.2-3.2), perl-modules-5.38 (= 5.38.2-3.2), pkg-config (= 1.8.1-1+b2), pkgconf (= 1.8.1-1+b2), pkgconf-bin (= 1.8.1-1+b2), po-debconf (= 1.0.21+nmu1), rpcsvc-proto (= 1.4.3-1), sed (= 4.9-2), sensible-utils (= 0.0.22), sysvinit-utils (= 3.08-7), tar (= 1.35+dfsg-3), usr-is-merged (= 39), util-linux (= 2.39.3-11), xz-utils (= 5.6.1+really5.4.5-1), zlib1g (= 1:1.3.dfsg-3.1) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="en_US.UTF-8" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1710077092" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ libmems-dev_1.6.0+4725-10_s390x.deb ----------------------------------- new Debian package, version 2.0. size 852012 bytes: control archive=2912 bytes. 1189 bytes, 23 lines control 5006 bytes, 71 lines md5sums Package: libmems-dev Source: libmems Version: 1.6.0+4725-10 Architecture: s390x Maintainer: Debian Med Packaging Team Installed-Size: 6837 Depends: libmems1t64 (= 1.6.0+4725-10), libboost-filesystem1.83-dev, libboost-iostreams1.83-dev, libgenome-dev, libmuscle-dev Provides: libmems-1.6-dev Section: libdevel Priority: optional Homepage: http://sourceforge.net/p/mauve/code/HEAD/tree/libMems/trunk/ Description: development library to support DNA string matching and comparative genomics libMems is a freely available software development library to support DNA string matching and comparative genomics. Among other things, libMems implements an algorithm to perform approximate multi-MUM and multi-MEM identification. The algorithm uses spaced seed patterns in conjunction with a seed-and-extend style hashing method to identify matches. The method is efficient, requiring a maximum of only 16 bytes per base of the largest input sequence, and this data can be stored externally (i.e. on disk) to further reduce memory requirements. . This is the development package containing the statically linked library and the header files. drwxr-xr-x root/root 0 2024-03-10 13:24 ./ drwxr-xr-x root/root 0 2024-03-10 13:24 ./usr/ drwxr-xr-x root/root 0 2024-03-10 13:24 ./usr/include/ drwxr-xr-x root/root 0 2024-03-10 13:24 ./usr/include/libMems/ -rw-r--r-- root/root 3614 2024-03-10 13:24 ./usr/include/libMems/AbstractGappedAlignment.h -rw-r--r-- root/root 13029 2024-03-10 13:24 ./usr/include/libMems/AbstractMatch.h -rw-r--r-- root/root 11670 2024-03-10 13:24 ./usr/include/libMems/Aligner.h -rw-r--r-- root/root 8161 2024-03-10 13:24 ./usr/include/libMems/Backbone.h -rw-r--r-- root/root 26662 2024-03-10 13:24 ./usr/include/libMems/CompactGappedAlignment.h -rw-r--r-- root/root 2075 2024-03-10 13:24 ./usr/include/libMems/DNAFileSML.h -rw-r--r-- root/root 1905 2024-03-10 13:24 ./usr/include/libMems/DNAMemorySML.h -rw-r--r-- root/root 5031 2024-03-10 13:24 ./usr/include/libMems/DenseAbstractMatch.h -rw-r--r-- root/root 10891 2024-03-10 13:24 ./usr/include/libMems/DistanceMatrix.h -rw-r--r-- root/root 4590 2024-03-10 13:24 ./usr/include/libMems/FileSML.h -rw-r--r-- root/root 5777 2024-03-10 13:24 ./usr/include/libMems/Files.h -rw-r--r-- root/root 2513 2024-03-10 13:24 ./usr/include/libMems/GappedAligner.h -rw-r--r-- root/root 8478 2024-03-10 13:24 ./usr/include/libMems/GappedAlignment.h -rw-r--r-- root/root 29239 2024-03-10 13:24 ./usr/include/libMems/GreedyBreakpointElimination.h drwxr-xr-x root/root 0 2024-03-10 13:24 ./usr/include/libMems/HomologyHMM/ -rw-r--r-- root/root 20861 2024-03-10 13:24 ./usr/include/libMems/HomologyHMM/algebras.h -rw-r--r-- root/root 13161 2024-03-10 13:24 ./usr/include/libMems/HomologyHMM/dptables.h -rw-r--r-- root/root 7163 2024-03-10 13:24 ./usr/include/libMems/HomologyHMM/homology.h -rw-r--r-- root/root 7759 2024-03-10 13:24 ./usr/include/libMems/HomologyHMM/parameters.h -rw-r--r-- root/root 9786 2024-03-10 13:24 ./usr/include/libMems/HybridAbstractMatch.h -rw-r--r-- root/root 30049 2024-03-10 13:24 ./usr/include/libMems/Interval.h -rw-r--r-- root/root 27519 2024-03-10 13:24 ./usr/include/libMems/IntervalList.h -rw-r--r-- root/root 13712 2024-03-10 13:24 ./usr/include/libMems/Islands.h -rw-r--r-- root/root 1825 2024-03-10 13:24 ./usr/include/libMems/LCB.h -rw-r--r-- root/root 1416 2024-03-10 13:24 ./usr/include/libMems/MaskedMemHash.h -rw-r--r-- root/root 926 2024-03-10 13:24 ./usr/include/libMems/Match.h -rw-r--r-- root/root 13449 2024-03-10 13:24 ./usr/include/libMems/MatchFinder.h -rw-r--r-- root/root 4728 2024-03-10 13:24 ./usr/include/libMems/MatchHashEntry.h -rw-r--r-- root/root 22769 2024-03-10 13:24 ./usr/include/libMems/MatchList.h -rw-r--r-- root/root 4377 2024-03-10 13:24 ./usr/include/libMems/MatchProjectionAdapter.h -rw-r--r-- root/root 4016 2024-03-10 13:24 ./usr/include/libMems/Matrix.h -rw-r--r-- root/root 7182 2024-03-10 13:24 ./usr/include/libMems/MemHash.h -rw-r--r-- root/root 1543 2024-03-10 13:24 ./usr/include/libMems/Memory.h -rw-r--r-- root/root 1988 2024-03-10 13:24 ./usr/include/libMems/MemorySML.h -rw-r--r-- root/root 5235 2024-03-10 13:24 ./usr/include/libMems/MuscleInterface.h -rw-r--r-- root/root 4605 2024-03-10 13:24 ./usr/include/libMems/NumericMatrix.h -rw-r--r-- root/root 3674 2024-03-10 13:24 ./usr/include/libMems/PairwiseMatchAdapter.h -rw-r--r-- root/root 1013 2024-03-10 13:24 ./usr/include/libMems/PairwiseMatchFinder.h -rw-r--r-- root/root 10333 2024-03-10 13:24 ./usr/include/libMems/PhyloTree.h -rw-r--r-- root/root 24671 2024-03-10 13:24 ./usr/include/libMems/ProgressiveAligner.h -rw-r--r-- root/root 1428 2024-03-10 13:24 ./usr/include/libMems/RepeatHash.h -rw-r--r-- root/root 1453 2024-03-10 13:24 ./usr/include/libMems/RepeatMatch.h -rw-r--r-- root/root 2195 2024-03-10 13:24 ./usr/include/libMems/RepeatMatchList.h -rw-r--r-- root/root 10167 2024-03-10 13:24 ./usr/include/libMems/Scoring.h -rw-r--r-- root/root 9694 2024-03-10 13:24 ./usr/include/libMems/SeedMasks.h -rw-r--r-- root/root 2483 2024-03-10 13:24 ./usr/include/libMems/SeedOccurrenceList.h -rw-r--r-- root/root 4383 2024-03-10 13:24 ./usr/include/libMems/SlotAllocator.h -rw-r--r-- root/root 12250 2024-03-10 13:24 ./usr/include/libMems/SortedMerList.h -rw-r--r-- root/root 7625 2024-03-10 13:24 ./usr/include/libMems/SparseAbstractMatch.h -rw-r--r-- root/root 3100 2024-03-10 13:24 ./usr/include/libMems/SubstitutionMatrix.h -rw-r--r-- root/root 1879 2024-03-10 13:24 ./usr/include/libMems/SuperInterval.h -rw-r--r-- root/root 4590 2024-03-10 13:24 ./usr/include/libMems/TreeUtilities.h -rw-r--r-- root/root 7254 2024-03-10 13:24 ./usr/include/libMems/UngappedLocalAlignment.h -rw-r--r-- root/root 1214 2024-03-10 13:24 ./usr/include/libMems/configuration.h drwxr-xr-x root/root 0 2024-03-10 13:24 ./usr/include/libMems/dmSML/ -rw-r--r-- root/root 381 2024-03-10 13:24 ./usr/include/libMems/dmSML/aPOSIXaio.h -rw-r--r-- root/root 328 2024-03-10 13:24 ./usr/include/libMems/dmSML/alibc.h -rw-r--r-- root/root 387 2024-03-10 13:24 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2024-03-10 13:24 ./usr/lib/s390x-linux-gnu/ -rw-r--r-- root/root 6454906 2024-03-10 13:24 ./usr/lib/s390x-linux-gnu/libMems.a lrwxrwxrwx root/root 0 2024-03-10 13:24 ./usr/lib/s390x-linux-gnu/libMems.so -> libMems.so.1.0.0 drwxr-xr-x root/root 0 2024-03-10 13:24 ./usr/lib/s390x-linux-gnu/pkgconfig/ -rw-r--r-- root/root 389 2024-03-10 13:24 ./usr/lib/s390x-linux-gnu/pkgconfig/libMems.pc drwxr-xr-x root/root 0 2024-03-10 13:24 ./usr/share/ drwxr-xr-x root/root 0 2024-03-10 13:24 ./usr/share/doc/ drwxr-xr-x root/root 0 2024-03-10 13:24 ./usr/share/doc/libmems-dev/ -rw-r--r-- root/root 635 2024-03-10 13:24 ./usr/share/doc/libmems-dev/changelog.Debian.gz -rw-r--r-- root/root 2464 2024-03-10 13:24 ./usr/share/doc/libmems-dev/copyright libmems1t64-dbgsym_1.6.0+4725-10_s390x.deb ------------------------------------------ new Debian package, version 2.0. size 10779496 bytes: control archive=560 bytes. 413 bytes, 13 lines control 106 bytes, 1 lines md5sums Package: libmems1t64-dbgsym Source: libmems Version: 1.6.0+4725-10 Auto-Built-Package: debug-symbols Architecture: s390x Maintainer: Debian Med Packaging Team Installed-Size: 10749 Depends: libmems1t64 (= 1.6.0+4725-10) Section: debug Priority: optional Multi-Arch: same Description: debug symbols for libmems1t64 Build-Ids: dfa0b7ff794a444910ada5c4de3f255f3ca47344 drwxr-xr-x root/root 0 2024-03-10 13:24 ./ drwxr-xr-x root/root 0 2024-03-10 13:24 ./usr/ drwxr-xr-x root/root 0 2024-03-10 13:24 ./usr/lib/ drwxr-xr-x root/root 0 2024-03-10 13:24 ./usr/lib/debug/ drwxr-xr-x root/root 0 2024-03-10 13:24 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2024-03-10 13:24 ./usr/lib/debug/.build-id/df/ -rw-r--r-- root/root 10996520 2024-03-10 13:24 ./usr/lib/debug/.build-id/df/a0b7ff794a444910ada5c4de3f255f3ca47344.debug drwxr-xr-x root/root 0 2024-03-10 13:24 ./usr/share/ drwxr-xr-x root/root 0 2024-03-10 13:24 ./usr/share/doc/ lrwxrwxrwx root/root 0 2024-03-10 13:24 ./usr/share/doc/libmems1t64-dbgsym -> libmems1t64 libmems1t64_1.6.0+4725-10_s390x.deb ----------------------------------- new Debian package, version 2.0. size 577456 bytes: control archive=1272 bytes. 1355 bytes, 25 lines control 299 bytes, 4 lines md5sums 38 bytes, 1 lines shlibs 68 bytes, 2 lines triggers Package: libmems1t64 Source: libmems Version: 1.6.0+4725-10 Architecture: s390x Maintainer: Debian Med Packaging Team Installed-Size: 2041 Depends: libboost-filesystem1.83.0 (>= 1.83.0), libboost-iostreams1.83.0 (>= 1.83.0), libc6 (>= 2.34), libgcc-s1 (>= 3.0), libgenome0 (>= 1.3.11+svn20110227.4616), libmuscle1 (>= 3.7+4565), libstdc++6 (>= 13.1) Conflicts: libmems-1.6-1, libmems-1.6-1v5, libmems1 (<< 1.6.0+4725-10) Replaces: libmems-1.6-1, libmems-1.6-1v5, libmems1 Provides: libmems1 (= 1.6.0+4725-10) Section: libs Priority: optional Multi-Arch: same Homepage: http://sourceforge.net/p/mauve/code/HEAD/tree/libMems/trunk/ Description: library to support DNA string matching and comparative genomics libMems is a freely available software development library to support DNA string matching and comparative genomics. Among other things, libMems implements an algorithm to perform approximate multi-MUM and multi-MEM identification. The algorithm uses spaced seed patterns in conjunction with a seed-and-extend style hashing method to identify matches. The method is efficient, requiring a maximum of only 16 bytes per base of the largest input sequence, and this data can be stored externally (i.e. on disk) to further reduce memory requirements. . This package contains the dynamic library. drwxr-xr-x root/root 0 2024-03-10 13:24 ./ drwxr-xr-x root/root 0 2024-03-10 13:24 ./usr/ drwxr-xr-x root/root 0 2024-03-10 13:24 ./usr/lib/ drwxr-xr-x root/root 0 2024-03-10 13:24 ./usr/lib/s390x-linux-gnu/ lrwxrwxrwx root/root 0 2024-03-10 13:24 ./usr/lib/s390x-linux-gnu/libMems.so.1 -> libMems.so.1.0.0 -rw-r--r-- root/root 2071456 2024-03-10 13:24 ./usr/lib/s390x-linux-gnu/libMems.so.1.0.0 drwxr-xr-x root/root 0 2024-03-10 13:24 ./usr/share/ drwxr-xr-x root/root 0 2024-03-10 13:24 ./usr/share/doc/ drwxr-xr-x root/root 0 2024-03-10 13:24 ./usr/share/doc/libmems1t64/ -rw-r--r-- root/root 635 2024-03-10 13:24 ./usr/share/doc/libmems1t64/changelog.Debian.gz -rw-r--r-- root/root 2464 2024-03-10 13:24 ./usr/share/doc/libmems1t64/copyright drwxr-xr-x root/root 0 2024-03-10 13:24 ./usr/share/lintian/ drwxr-xr-x root/root 0 2024-03-10 13:24 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 56 2024-03-10 13:24 ./usr/share/lintian/overrides/libmems1t64 lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:amd64 Filtered Build-Depends: lintian:amd64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/apt_archive/sbuild-build-depends-lintian-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [615 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [1461 B] Get:5 copy:/<>/apt_archive ./ Packages [1540 B] Fetched 3616 B in 0s (0 B/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Execute external solver... The following packages were automatically installed and are no longer required: mount tzdata Use 'apt autoremove' to remove them. The following additional packages will be installed: ca-certificates diffstat gpg gpgconf iso-codes libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libberkeleydb-perl libcapture-tiny-perl libcgi-pm-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdata-validate-ip-perl libdata-validate-uri-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libencode-locale-perl libexception-class-perl libfile-basedir-perl libfile-find-rule-perl libfile-listing-perl libfont-ttf-perl libhtml-form-perl libhtml-html5-entities-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tokeparser-simple-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libimport-into-perl libio-html-perl libio-interactive-perl libio-socket-ssl-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-someutils-perl liblist-utilsby-perl liblwp-mediatypes-perl liblwp-protocol-https-perl liblz1 liblzo2-2 libmarkdown2 libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnet-http-perl libnet-ipv6addr-perl libnet-netmask-perl libnet-ssleay-perl libnetaddr-ip-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl libreadline8t64 libregexp-wildcards-perl librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libsqlite3-0 libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libsyntax-keyword-try-perl libterm-readkey-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libwww-mechanize-perl libwww-perl libwww-robotrules-perl libxs-parse-keyword-perl libyaml-0-2 libyaml-libyaml-perl lintian lzop netbase openssl patchutils perl-openssl-defaults plzip readline-common t1utils unzip Suggested packages: isoquery libxml-parser-perl libdata-dump-perl libcrypt-ssleay-perl libscalar-number-perl libbareword-filehandles-perl libindirect-perl libmultidimensional-perl libbusiness-isbn-perl libregexp-ipv6-perl libauthen-ntlm-perl binutils-multiarch libtext-template-perl readline-doc zip Recommended packages: gnupg libcgi-fast-perl libhtml-format-perl libio-compress-brotli-perl liblist-someutils-xs-perl libfreezethaw-perl libmath-base85-perl libsocket6-perl libpackage-stash-xs-perl libxstring-perl libdata-dump-perl libhttp-daemon-perl libmailtools-perl The following NEW packages will be installed: ca-certificates diffstat gpg gpgconf iso-codes libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libberkeleydb-perl libcapture-tiny-perl libcgi-pm-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdata-validate-ip-perl libdata-validate-uri-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libencode-locale-perl libexception-class-perl libfile-basedir-perl libfile-find-rule-perl libfile-listing-perl libfont-ttf-perl libhtml-form-perl libhtml-html5-entities-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tokeparser-simple-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libimport-into-perl libio-html-perl libio-interactive-perl libio-socket-ssl-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-someutils-perl liblist-utilsby-perl liblwp-mediatypes-perl liblwp-protocol-https-perl liblz1 liblzo2-2 libmarkdown2 libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnet-http-perl libnet-ipv6addr-perl libnet-netmask-perl libnet-ssleay-perl libnetaddr-ip-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl libreadline8t64 libregexp-wildcards-perl librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libsqlite3-0 libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libsyntax-keyword-try-perl libterm-readkey-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libwww-mechanize-perl libwww-perl libwww-robotrules-perl libxs-parse-keyword-perl libyaml-0-2 libyaml-libyaml-perl lintian lzop netbase openssl patchutils perl-openssl-defaults plzip readline-common sbuild-build-depends-lintian-dummy:s390x t1utils unzip 0 upgraded, 129 newly installed, 0 to remove and 0 not upgraded. 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sid/main amd64 perl-openssl-defaults amd64 7+b2 [6724 B] Get:76 http://localhost:3142/debian sid/main amd64 libnet-ssleay-perl amd64 1.94-1+b1 [339 kB] Get:77 http://localhost:3142/debian sid/main amd64 libio-socket-ssl-perl all 2.085-1 [218 kB] Get:78 http://localhost:3142/debian sid/main amd64 libnet-http-perl all 6.23-1 [23.9 kB] Get:79 http://localhost:3142/debian sid/main amd64 liblwp-protocol-https-perl all 6.14-1 [10.8 kB] Get:80 http://localhost:3142/debian sid/main amd64 libwww-robotrules-perl all 6.02-1 [12.9 kB] Get:81 http://localhost:3142/debian sid/main amd64 libwww-perl all 6.77-1 [183 kB] Get:82 http://localhost:3142/debian sid/main amd64 libhtml-tokeparser-simple-perl all 3.16-4 [39.1 kB] Get:83 http://localhost:3142/debian sid/main amd64 libimport-into-perl all 1.002005-2 [11.3 kB] Get:84 http://localhost:3142/debian sid/main amd64 libio-interactive-perl all 1.025-1 [11.4 kB] Get:85 http://localhost:3142/debian sid/main amd64 libipc-run3-perl all 0.049-1 [31.5 kB] Get:86 http://localhost:3142/debian sid/main amd64 libjson-maybexs-perl all 1.004005-1 [12.9 kB] Get:87 http://localhost:3142/debian sid/main amd64 liblist-compare-perl all 0.55-2 [65.7 kB] Get:88 http://localhost:3142/debian sid/main amd64 liblist-someutils-perl all 0.59-1 [37.1 kB] Get:89 http://localhost:3142/debian sid/main amd64 liblist-utilsby-perl all 0.12-2 [15.5 kB] Get:90 http://localhost:3142/debian sid/main amd64 liblz1 amd64 1.14-1 [38.5 kB] Get:91 http://localhost:3142/debian sid/main amd64 liblzo2-2 amd64 2.10-2+b1 [54.8 kB] Get:92 http://localhost:3142/debian sid/main amd64 libmarkdown2 amd64 2.2.7-2+b1 [35.6 kB] Get:93 http://localhost:3142/debian sid/main amd64 libmldbm-perl all 2.05-4 [16.8 kB] Get:94 http://localhost:3142/debian sid/main amd64 librole-tiny-perl all 2.002004-1 [21.4 kB] Get:95 http://localhost:3142/debian sid/main amd64 libsub-quote-perl all 2.006008-1 [21.8 kB] Get:96 http://localhost:3142/debian sid/main amd64 libmoo-perl all 2.005005-1 [58.0 kB] Get:97 http://localhost:3142/debian sid/main amd64 libstrictures-perl all 2.000006-1 [18.6 kB] Get:98 http://localhost:3142/debian sid/main amd64 libmoox-aliases-perl all 0.001006-2 [7156 B] Get:99 http://localhost:3142/debian sid/main amd64 libmouse-perl amd64 2.5.10-1+b5 [143 kB] Get:100 http://localhost:3142/debian sid/main amd64 libpackage-stash-perl all 0.40-1 [22.0 kB] Get:101 http://localhost:3142/debian sid/main amd64 libsub-identify-perl amd64 0.14-3+b2 [11.2 kB] Get:102 http://localhost:3142/debian sid/main amd64 libsub-name-perl amd64 0.27-1+b2 [12.5 kB] Get:103 http://localhost:3142/debian sid/main amd64 libnamespace-clean-perl all 0.27-2 [17.8 kB] Get:104 http://localhost:3142/debian sid/main amd64 libpath-tiny-perl all 0.144-1 [56.4 kB] Get:105 http://localhost:3142/debian sid/main amd64 libperlio-gzip-perl amd64 0.20-1+b3 [17.5 kB] Get:106 http://localhost:3142/debian sid/main amd64 libperlio-utf8-strict-perl amd64 0.010-1+b2 [11.4 kB] Get:107 http://localhost:3142/debian sid/main amd64 libproc-processtable-perl amd64 0.636-1+b2 [42.2 kB] Get:108 http://localhost:3142/debian sid/main amd64 libregexp-wildcards-perl all 1.05-3 [14.1 kB] Get:109 http://localhost:3142/debian sid/main amd64 libsereal-decoder-perl amd64 5.004+ds-1+b2 [99.3 kB] Get:110 http://localhost:3142/debian sid/main amd64 libsereal-encoder-perl amd64 5.004+ds-1+b2 [102 kB] Get:111 http://localhost:3142/debian sid/main amd64 libsort-versions-perl all 1.62-3 [8928 B] Get:112 http://localhost:3142/debian sid/main amd64 libxs-parse-keyword-perl amd64 0.39-1+b2 [57.6 kB] Get:113 http://localhost:3142/debian sid/main amd64 libsyntax-keyword-try-perl amd64 0.29-2 [26.9 kB] Get:114 http://localhost:3142/debian sid/main amd64 libterm-readkey-perl amd64 2.38-2+b3 [24.7 kB] Get:115 http://localhost:3142/debian sid/main amd64 libtext-levenshteinxs-perl amd64 0.03-5+b3 [8700 B] Get:116 http://localhost:3142/debian sid/main amd64 libtext-markdown-discount-perl amd64 0.16-1+b2 [13.0 kB] Get:117 http://localhost:3142/debian sid/main amd64 libtext-xslate-perl amd64 3.5.9-2 [173 kB] Get:118 http://localhost:3142/debian sid/main amd64 libtime-duration-perl all 1.21-2 [13.1 kB] Get:119 http://localhost:3142/debian sid/main amd64 libtime-moment-perl amd64 0.44-2+b3 [72.8 kB] Get:120 http://localhost:3142/debian sid/main amd64 libunicode-utf8-perl amd64 0.62-2+b2 [20.2 kB] Get:121 http://localhost:3142/debian sid/main amd64 libwww-mechanize-perl all 2.18-1 [114 kB] Get:122 http://localhost:3142/debian sid/main amd64 libyaml-0-2 amd64 0.2.5-1 [53.6 kB] Get:123 http://localhost:3142/debian sid/main amd64 libyaml-libyaml-perl amd64 0.89+ds-1+b1 [35.0 kB] Get:124 http://localhost:3142/debian sid/main amd64 plzip amd64 1.11-1 [63.9 kB] Get:125 http://localhost:3142/debian sid/main amd64 lzop amd64 1.04-2 [84.2 kB] Get:126 http://localhost:3142/debian sid/main amd64 patchutils amd64 0.4.2-1 [77.5 kB] Get:127 http://localhost:3142/debian sid/main amd64 t1utils amd64 1.41-4 [62.1 kB] Get:128 http://localhost:3142/debian sid/main amd64 unzip amd64 6.0-28 [166 kB] Get:129 http://localhost:3142/debian sid/main amd64 lintian all 2.117.0 [1052 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 13.6 MB in 0s (80.4 MB/s) Selecting previously unselected package netbase. (Reading database ... 35287 files and directories currently installed.) Preparing to unpack .../000-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package readline-common. Preparing to unpack .../001-readline-common_8.2-4_all.deb ... Unpacking readline-common (8.2-4) ... Selecting previously unselected package openssl. Preparing to unpack .../002-openssl_3.1.5-1.1_amd64.deb ... Unpacking openssl (3.1.5-1.1) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../003-ca-certificates_20240203_all.deb ... Unpacking ca-certificates (20240203) ... Selecting previously unselected package diffstat. Preparing to unpack .../004-diffstat_1.66-1_amd64.deb ... Unpacking diffstat (1.66-1) ... Selecting previously unselected package libassuan0:amd64. Preparing to unpack .../005-libassuan0_2.5.6-1_amd64.deb ... Unpacking libassuan0:amd64 (2.5.6-1) ... Selecting previously unselected package libreadline8t64:amd64. Preparing to unpack .../006-libreadline8t64_8.2-4_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-4) ... Selecting previously unselected package gpgconf. Preparing to unpack .../007-gpgconf_2.2.40-3_amd64.deb ... Unpacking gpgconf (2.2.40-3) ... Selecting previously unselected package libsqlite3-0:amd64. Preparing to unpack .../008-libsqlite3-0_3.45.2-1_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.45.2-1) ... 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Unpacking libdynaloader-functions-perl (0.003-3) ... Selecting previously unselected package libdevel-callchecker-perl:amd64. Preparing to unpack .../015-libdevel-callchecker-perl_0.008-2+b2_amd64.deb ... Unpacking libdevel-callchecker-perl:amd64 (0.008-2+b2) ... Selecting previously unselected package libparams-classify-perl:amd64. Preparing to unpack .../016-libparams-classify-perl_0.015-2+b3_amd64.deb ... Unpacking libparams-classify-perl:amd64 (0.015-2+b3) ... Selecting previously unselected package libmodule-runtime-perl. Preparing to unpack .../017-libmodule-runtime-perl_0.016-2_all.deb ... Unpacking libmodule-runtime-perl (0.016-2) ... Selecting previously unselected package libtry-tiny-perl. Preparing to unpack .../018-libtry-tiny-perl_0.31-2_all.deb ... Unpacking libtry-tiny-perl (0.31-2) ... Selecting previously unselected package libmodule-implementation-perl. Preparing to unpack .../019-libmodule-implementation-perl_0.09-2_all.deb ... 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Preparing to unpack .../030-libclass-method-modifiers-perl_2.15-1_all.deb ... Unpacking libclass-method-modifiers-perl (2.15-1) ... Selecting previously unselected package libclass-xsaccessor-perl. Preparing to unpack .../031-libclass-xsaccessor-perl_1.19-4+b3_amd64.deb ... Unpacking libclass-xsaccessor-perl (1.19-4+b3) ... Selecting previously unselected package libclone-perl:amd64. Preparing to unpack .../032-libclone-perl_0.46-1+b2_amd64.deb ... Unpacking libclone-perl:amd64 (0.46-1+b2) ... Selecting previously unselected package libconfig-tiny-perl. Preparing to unpack .../033-libconfig-tiny-perl_2.30-1_all.deb ... Unpacking libconfig-tiny-perl (2.30-1) ... Selecting previously unselected package libparams-util-perl. Preparing to unpack .../034-libparams-util-perl_1.102-3_amd64.deb ... Unpacking libparams-util-perl (1.102-3) ... Selecting previously unselected package libsub-install-perl. Preparing to unpack .../035-libsub-install-perl_0.929-1_all.deb ... 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Unpacking libdata-validate-ip-perl (0.31-1) ... Selecting previously unselected package libdata-validate-uri-perl. Preparing to unpack .../052-libdata-validate-uri-perl_0.07-3_all.deb ... Unpacking libdata-validate-uri-perl (0.07-3) ... Selecting previously unselected package libdevel-size-perl. Preparing to unpack .../053-libdevel-size-perl_0.83-2+b3_amd64.deb ... Unpacking libdevel-size-perl (0.83-2+b3) ... Selecting previously unselected package libemail-address-xs-perl. Preparing to unpack .../054-libemail-address-xs-perl_1.05-1+b3_amd64.deb ... Unpacking libemail-address-xs-perl (1.05-1+b3) ... Selecting previously unselected package libencode-locale-perl. Preparing to unpack .../055-libencode-locale-perl_1.05-3_all.deb ... Unpacking libencode-locale-perl (1.05-3) ... Selecting previously unselected package libipc-system-simple-perl. Preparing to unpack .../056-libipc-system-simple-perl_1.30-2_all.deb ... Unpacking libipc-system-simple-perl (1.30-2) ... 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Unpacking libhttp-date-perl (6.06-1) ... Selecting previously unselected package libfile-listing-perl. Preparing to unpack .../063-libfile-listing-perl_6.16-1_all.deb ... Unpacking libfile-listing-perl (6.16-1) ... Selecting previously unselected package libfont-ttf-perl. Preparing to unpack .../064-libfont-ttf-perl_1.06-2_all.deb ... Unpacking libfont-ttf-perl (1.06-2) ... Selecting previously unselected package libio-html-perl. Preparing to unpack .../065-libio-html-perl_1.004-3_all.deb ... Unpacking libio-html-perl (1.004-3) ... Selecting previously unselected package liblwp-mediatypes-perl. Preparing to unpack .../066-liblwp-mediatypes-perl_6.04-2_all.deb ... Unpacking liblwp-mediatypes-perl (6.04-2) ... Selecting previously unselected package libhttp-message-perl. Preparing to unpack .../067-libhttp-message-perl_6.45-1_all.deb ... Unpacking libhttp-message-perl (6.45-1) ... Selecting previously unselected package libhtml-form-perl. 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Preparing to unpack .../128-sbuild-build-depends-lintian-dummy_0.invalid.0_s390x.deb ... Unpacking sbuild-build-depends-lintian-dummy:s390x (0.invalid.0) ... Setting up libapt-pkg-perl (0.1.40+b5) ... Setting up liblz1:amd64 (1.14-1) ... Setting up libberkeleydb-perl:amd64 (0.64-2+b3) ... Setting up plzip (1.11-1) ... update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip (lzip) in auto mode update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip-compressor (lzip-compressor) in auto mode update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip-decompressor (lzip-decompressor) in auto mode Setting up libunicode-utf8-perl (0.62-2+b2) ... Setting up libmouse-perl (2.5.10-1+b5) ... Setting up libdata-messagepack-perl (1.02-1+b3) ... Setting up libdynaloader-functions-perl (0.003-3) ... Setting up libtext-glob-perl (0.11-3) ... Setting up libclass-method-modifiers-perl (2.15-1) ... Setting up liblist-compare-perl (0.55-2) ... Setting up libclone-perl:amd64 (0.46-1+b2) ... Setting up libyaml-0-2:amd64 (0.2.5-1) ... Setting up libsub-identify-perl (0.14-3+b2) ... Setting up libcpanel-json-xs-perl:amd64 (4.37-1+b2) ... Setting up libhtml-tagset-perl (3.24-1) ... Setting up libdevel-size-perl (0.83-2+b3) ... Setting up unzip (6.0-28) ... Setting up libsqlite3-0:amd64 (3.45.2-1) ... Setting up liblwp-mediatypes-perl (6.04-2) ... Setting up libyaml-libyaml-perl (0.89+ds-1+b1) ... Setting up libio-interactive-perl (1.025-1) ... Setting up libtry-tiny-perl (0.31-2) ... Setting up perl-openssl-defaults:amd64 (7+b2) ... Setting up libmldbm-perl (2.05-4) ... Setting up liblzo2-2:amd64 (2.10-2+b1) ... Setting up libtime-moment-perl (0.44-2+b3) ... Setting up libencode-locale-perl (1.05-3) ... Setting up libassuan0:amd64 (2.5.6-1) ... Setting up libconfig-tiny-perl (2.30-1) ... Setting up libsereal-encoder-perl (5.004+ds-1+b2) ... Setting up liblist-utilsby-perl (0.12-2) ... Setting up libnet-netmask-perl (2.0002-2) ... Setting up libsub-install-perl (0.929-1) ... Setting up libnumber-compare-perl (0.03-3) ... Setting up patchutils (0.4.2-1) ... Setting up libjson-maybexs-perl (1.004005-1) ... Setting up libnetaddr-ip-perl (4.079+dfsg-2+b3) ... Setting up libclass-data-inheritable-perl (0.08-3) ... Setting up libxs-parse-keyword-perl (0.39-1+b2) ... Setting up libfile-find-rule-perl (0.34-3) ... Setting up libipc-system-simple-perl (1.30-2) ... Setting up libnet-domain-tld-perl (1.75-3) ... Setting up libperlio-utf8-strict-perl (0.010-1+b2) ... Setting up t1utils (1.41-4) ... Setting up diffstat (1.66-1) ... Setting up libvariable-magic-perl (0.64-1) ... Setting up libio-html-perl (1.004-3) ... Setting up libb-hooks-op-check-perl:amd64 (0.22-3+b1) ... Setting up libparams-util-perl (1.102-3) ... Setting up libtime-duration-perl (1.21-2) ... Setting up libtext-xslate-perl:amd64 (3.5.9-2) ... Setting up libsub-exporter-progressive-perl (0.001013-3) ... Setting up libcapture-tiny-perl (0.48-2) ... Setting up libtimedate-perl (2.3300-2) ... Setting up libsub-name-perl:amd64 (0.27-1+b2) ... Setting up libsyntax-keyword-try-perl (0.29-2) ... Setting up libdata-validate-domain-perl (0.10-1.1) ... Setting up libproc-processtable-perl:amd64 (0.636-1+b2) ... Setting up libpath-tiny-perl (0.144-1) ... Setting up lzop (1.04-2) ... Setting up librole-tiny-perl (2.002004-1) ... Setting up libipc-run3-perl (0.049-1) ... Setting up libregexp-wildcards-perl (1.05-3) ... Setting up libaliased-perl (0.34-3) ... Setting up netbase (6.4) ... Setting up libstrictures-perl (2.000006-1) ... Setting up libsub-quote-perl (2.006008-1) ... Setting up libdevel-stacktrace-perl (2.0500-1) ... Setting up libclass-xsaccessor-perl (1.19-4+b3) ... Setting up libsort-versions-perl (1.62-3) ... Setting up libterm-readkey-perl (2.38-2+b3) ... Setting up libfont-ttf-perl (1.06-2) ... Setting up openssl (3.1.5-1.1) ... Setting up libtext-levenshteinxs-perl (0.03-5+b3) ... Setting up libperlio-gzip-perl (0.20-1+b3) ... Setting up readline-common (8.2-4) ... Setting up libhtml-html5-entities-perl (0.004-3) ... Setting up libsereal-decoder-perl (5.004+ds-1+b2) ... Setting up libmarkdown2:amd64 (2.2.7-2+b1) ... Setting up liburi-perl (5.28-1) ... Setting up iso-codes (4.16.0-1) ... Setting up libnet-ipv6addr-perl (1.02-1) ... Setting up libdata-validate-ip-perl (0.31-1) ... Setting up libemail-address-xs-perl (1.05-1+b3) ... Setting up libnet-ssleay-perl:amd64 (1.94-1+b1) ... Setting up libhttp-date-perl (6.06-1) ... Setting up libfile-basedir-perl (0.09-2) ... Setting up libfile-listing-perl (6.16-1) ... Setting up libnet-http-perl (6.23-1) ... Setting up libtext-markdown-discount-perl (0.16-1+b2) ... Setting up libexception-class-perl (1.45-1) ... Setting up libdevel-callchecker-perl:amd64 (0.008-2+b2) ... Setting up ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 146 added, 0 removed; done. Setting up libdata-validate-uri-perl (0.07-3) ... Setting up libdata-optlist-perl (0.114-1) ... Setting up libreadline8t64:amd64 (8.2-4) ... Setting up libwww-robotrules-perl (6.02-1) ... Setting up libhtml-parser-perl:amd64 (3.82-1) ... Setting up gpgconf (2.2.40-3) ... Setting up libio-socket-ssl-perl (2.085-1) ... Setting up gpg (2.2.40-3) ... Setting up libsub-exporter-perl (0.990-1) ... Setting up libhttp-message-perl (6.45-1) ... Setting up libhtml-form-perl (6.11-1) ... Setting up libiterator-perl (0.03+ds1-2) ... Setting up libhttp-negotiate-perl (6.01-2) ... Setting up libiterator-util-perl (0.02+ds1-2) ... Setting up libhttp-cookies-perl (6.11-1) ... Setting up libhtml-tree-perl (5.07-3) ... Setting up libparams-classify-perl:amd64 (0.015-2+b3) ... Setting up libcgi-pm-perl (4.64-1) ... Setting up libmodule-runtime-perl (0.016-2) ... Setting up libconst-fast-perl (0.014-2) ... Setting up libdata-dpath-perl (0.59-1) ... Setting up libmodule-implementation-perl (0.09-2) ... Setting up libpackage-stash-perl (0.40-1) ... Setting up libimport-into-perl (1.002005-2) ... Setting up libmoo-perl (2.005005-1) ... Setting up liblist-someutils-perl (0.59-1) ... Setting up libmoox-aliases-perl (0.001006-2) ... Setting up libb-hooks-endofscope-perl (0.28-1) ... Setting up libnamespace-clean-perl (0.27-2) ... Setting up libwww-perl (6.77-1) ... Setting up libhtml-tokeparser-simple-perl (3.16-4) ... Setting up libwww-mechanize-perl (2.18-1) ... Setting up liblwp-protocol-https-perl (6.14-1) ... Setting up lintian (2.117.0) ... Setting up sbuild-build-depends-lintian-dummy:s390x (0.invalid.0) ... Processing triggers for libc-bin (2.37-15.1) ... Processing triggers for man-db (2.12.0-4) ... Not building database; man-db/auto-update is not 'true'. Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Running lintian... I: Lintian run was successful. +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 336540 Build-Time: 381 Distribution: unstable Foreign Architectures: s390x Host Architecture: s390x Install-Time: 14 Job: libmems_1.6.0+4725-10 Lintian: pass Machine Architecture: amd64 Package: libmems Package-Time: 408 Source-Version: 1.6.0+4725-10 Space: 336540 Status: successful Version: 1.6.0+4725-10 -------------------------------------------------------------------------------- Finished at 2024-04-01T09:13:16Z Build needed 00:06:48, 336540k disk space