sbuild (Debian sbuild) 0.73.0 (23 Dec 2016) on gcc131.bak.milne.osuosl.org +==============================================================================+ | libminc 2.4.03-2 (armel) Fri, 08 Feb 2019 19:44:45 +0000 | +==============================================================================+ Package: libminc Version: 2.4.03-2 Source Version: 2.4.03-2 Distribution: unstable Machine Architecture: amd64 Host Architecture: armel Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/unstable-amd64-sbuild-711ccf75-5b5c-4ce8-a7de-c5a0deaa9713' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://debian.oregonstate.edu/debian unstable InRelease [243 kB] Get:2 http://debian.oregonstate.edu/debian unstable/main Sources.diff/Index [27.9 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 Packages.diff/Index [27.9 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main Sources 2019-02-08-0813.48.pdiff [6912 B] Get:5 http://debian.oregonstate.edu/debian unstable/main Sources 2019-02-08-1410.57.pdiff [17.5 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main Sources 2019-02-08-1410.57.pdiff [17.5 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-02-08-0813.48.pdiff [34.2 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-02-08-1410.57.pdiff [19.9 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-02-08-1410.57.pdiff [19.9 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main armel Packages [8028 kB] Fetched 8406 kB in 2s (4493 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: binutils binutils-common binutils-x86-64-linux-gnu libbinutils 4 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 4432 kB of archives. After this operation, 7168 B of additional disk space will be used. Get:1 http://debian.oregonstate.edu/debian unstable/main amd64 binutils-x86-64-linux-gnu amd64 2.31.1-12 [1825 kB] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 binutils amd64 2.31.1-12 [56.4 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 libbinutils amd64 2.31.1-12 [479 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 binutils-common amd64 2.31.1-12 [2072 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 4432 kB in 0s (76.5 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11799 files and directories currently installed.) Preparing to unpack .../binutils-x86-64-linux-gnu_2.31.1-12_amd64.deb ... Unpacking binutils-x86-64-linux-gnu (2.31.1-12) over (2.31.1-11) ... Preparing to unpack .../binutils_2.31.1-12_amd64.deb ... Unpacking binutils (2.31.1-12) over (2.31.1-11) ... Preparing to unpack .../libbinutils_2.31.1-12_amd64.deb ... Unpacking libbinutils:amd64 (2.31.1-12) over (2.31.1-11) ... Preparing to unpack .../binutils-common_2.31.1-12_amd64.deb ... Unpacking binutils-common:amd64 (2.31.1-12) over (2.31.1-11) ... Setting up binutils-common:amd64 (2.31.1-12) ... Setting up libbinutils:amd64 (2.31.1-12) ... Setting up binutils-x86-64-linux-gnu (2.31.1-12) ... Setting up binutils (2.31.1-12) ... Processing triggers for libc-bin (2.28-6) ... +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'libminc' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/libminc.git Please use: git clone https://salsa.debian.org/med-team/libminc.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 820 kB of source archives. Get:1 http://debian.oregonstate.edu/debian unstable/main libminc 2.4.03-2 (dsc) [2083 B] Get:2 http://debian.oregonstate.edu/debian unstable/main libminc 2.4.03-2 (tar) [809 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main libminc 2.4.03-2 (diff) [8804 B] Fetched 820 kB in 0s (3441 kB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/libminc-13QMXP/libminc-2.4.03' with '<>' I: NOTICE: Log filtering will replace 'build/libminc-13QMXP' with '<>' +------------------------------------------------------------------------------+ | Install crossbuild-essential | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: build-essential:amd64, fakeroot:amd64, crossbuild-essential-armel:amd64 Filtered Build-Depends: build-essential:amd64, fakeroot:amd64, crossbuild-essential-armel:amd64 dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-RYi8td/apt_archive/sbuild-build-depends-core-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy dpkg-scanpackages: info: Wrote 1 entries to output Packages file. Ign:1 copy:/<>/resolver-RYi8td/apt_archive ./ InRelease Get:2 copy:/<>/resolver-RYi8td/apt_archive ./ Release [957 B] Ign:3 copy:/<>/resolver-RYi8td/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-RYi8td/apt_archive ./ Sources [359 B] Get:5 copy:/<>/resolver-RYi8td/apt_archive ./ Packages [451 B] Fetched 1767 B in 0s (0 B/s) Reading package lists... Reading package lists... Install core build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: binutils-arm-linux-gnueabi cpp-8-arm-linux-gnueabi cpp-arm-linux-gnueabi cross-config crossbuild-essential-armel dpkg-cross file g++-8-arm-linux-gnueabi g++-arm-linux-gnueabi gcc-8-arm-linux-gnueabi gcc-8-arm-linux-gnueabi-base gcc-8-cross-base gcc-arm-linux-gnueabi libasan5-armel-cross libatomic1-armel-cross libc6-armel-cross libc6-dev-armel-cross libconfig-auto-perl libconfig-inifiles-perl libdebian-dpkgcross-perl libfile-homedir-perl libfile-which-perl libgcc-8-dev-armel-cross libgcc1-armel-cross libgomp1-armel-cross libicu63 libio-string-perl liblocale-gettext-perl libmagic-mgc libmagic1 libstdc++-8-dev-armel-cross libstdc++6-armel-cross libubsan1-armel-cross libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev-armel-cross sensible-utils ucf Suggested packages: binutils-doc gcc-8-locales cpp-doc binutils-multiarch gcc-8-doc libstdc++6-8-dbg-armel-cross libgcc1-dbg-armel-cross libgomp1-dbg-armel-cross libitm1-dbg-armel-cross libatomic1-dbg-armel-cross libasan5-dbg-armel-cross liblsan0-dbg-armel-cross libtsan0-dbg-armel-cross libubsan1-dbg-armel-cross libmpx2-dbg-armel-cross libquadmath0-dbg-armel-cross manpages-dev autoconf automake libtool flex bison gdb-arm-linux-gnueabi gcc-doc libyaml-shell-perl Recommended packages: libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl The following NEW packages will be installed: binutils-arm-linux-gnueabi cpp-8-arm-linux-gnueabi cpp-arm-linux-gnueabi cross-config crossbuild-essential-armel dpkg-cross file g++-8-arm-linux-gnueabi g++-arm-linux-gnueabi gcc-8-arm-linux-gnueabi gcc-8-arm-linux-gnueabi-base gcc-8-cross-base gcc-arm-linux-gnueabi libasan5-armel-cross libatomic1-armel-cross libc6-armel-cross libc6-dev-armel-cross libconfig-auto-perl libconfig-inifiles-perl libdebian-dpkgcross-perl libfile-homedir-perl libfile-which-perl libgcc-8-dev-armel-cross libgcc1-armel-cross libgomp1-armel-cross libicu63 libio-string-perl liblocale-gettext-perl libmagic-mgc libmagic1 libstdc++-8-dev-armel-cross libstdc++6-armel-cross libubsan1-armel-cross libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev-armel-cross sbuild-build-depends-core-dummy:armel sensible-utils ucf 0 upgraded, 44 newly installed, 0 to remove and 0 not upgraded. Need to get 41.7 MB of archives. After this operation, 154 MB of additional disk space will be used. Get:1 copy:/<>/resolver-RYi8td/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [872 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-3+b4 [18.9 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 sensible-utils all 0.0.12 [15.8 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic-mgc amd64 1:5.35-2 [242 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic1 amd64 1:5.35-2 [117 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 file amd64 1:5.35-2 [66.1 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 ucf all 3.0038+nmu1 [69.0 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 binutils-arm-linux-gnueabi amd64 2.31.1-12 [2830 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-8-arm-linux-gnueabi-base amd64 8.2.0-11cross1 [188 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-8-arm-linux-gnueabi amd64 8.2.0-11cross1 [6551 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-arm-linux-gnueabi amd64 4:8.2.0-2 [16.4 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 cross-config all 2.6.15-2 [39.7 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-8-cross-base all 8.2.0-11cross1 [183 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-armel-cross all 2.28-4cross1 [1188 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc1-armel-cross all 1:8.2.0-11cross1 [38.6 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 libgomp1-armel-cross all 8.2.0-11cross1 [65.9 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 libatomic1-armel-cross all 8.2.0-11cross1 [8808 B] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++6-armel-cross all 8.2.0-11cross1 [289 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 libasan5-armel-cross all 8.2.0-11cross1 [312 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 libubsan1-armel-cross all 8.2.0-11cross1 [103 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-8-dev-armel-cross all 8.2.0-11cross1 [599 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-8-arm-linux-gnueabi amd64 8.2.0-11cross1 [6958 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-arm-linux-gnueabi amd64 4:8.2.0-2 [1464 B] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 linux-libc-dev-armel-cross all 4.19.13-1cross1 [1196 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev-armel-cross all 2.28-4cross1 [2181 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-8-dev-armel-cross all 8.2.0-11cross1 [1534 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 g++-8-arm-linux-gnueabi amd64 8.2.0-11cross1 [7128 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 g++-arm-linux-gnueabi amd64 4:8.2.0-2 [1176 B] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-inifiles-perl all 3.000001-1 [51.9 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 libio-string-perl all 1.08-3 [12.3 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 libicu63 amd64 63.1-6 [8292 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 libxml2 amd64 2.9.4+dfsg1-7+b3 [687 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-1 [14.8 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-base-perl all 1.09-1 [20.4 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-perl all 1.00+dfsg-1 [58.6 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-libxml-perl amd64 2.0133+dfsg-1 [344 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-simple-perl all 2.25-1 [72.0 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-perl all 1.27-1 [66.8 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-auto-perl all 0.44-1 [19.5 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-which-perl all 1.23-1 [16.6 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-homedir-perl all 1.004-1 [42.7 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libdebian-dpkgcross-perl all 2.6.15-2 [38.5 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-cross all 2.6.15-2 [49.3 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 crossbuild-essential-armel all 12.5 [6544 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 41.7 MB in 1s (76.3 MB/s) Selecting previously unselected package liblocale-gettext-perl. (Reading database ... 11799 files and directories currently installed.) Preparing to unpack .../00-liblocale-gettext-perl_1.07-3+b4_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-3+b4) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.12_all.deb ... Unpacking sensible-utils (0.0.12) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../02-libmagic-mgc_1%3a5.35-2_amd64.deb ... Unpacking libmagic-mgc (1:5.35-2) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../03-libmagic1_1%3a5.35-2_amd64.deb ... Unpacking libmagic1:amd64 (1:5.35-2) ... Selecting previously unselected package file. Preparing to unpack .../04-file_1%3a5.35-2_amd64.deb ... Unpacking file (1:5.35-2) ... Selecting previously unselected package ucf. Preparing to unpack .../05-ucf_3.0038+nmu1_all.deb ... Moving old data out of the way Unpacking ucf (3.0038+nmu1) ... 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Unpacking libconfig-auto-perl (0.44-1) ... Selecting previously unselected package libfile-which-perl. Preparing to unpack .../38-libfile-which-perl_1.23-1_all.deb ... Unpacking libfile-which-perl (1.23-1) ... Selecting previously unselected package libfile-homedir-perl. Preparing to unpack .../39-libfile-homedir-perl_1.004-1_all.deb ... Unpacking libfile-homedir-perl (1.004-1) ... Selecting previously unselected package libdebian-dpkgcross-perl. Preparing to unpack .../40-libdebian-dpkgcross-perl_2.6.15-2_all.deb ... Unpacking libdebian-dpkgcross-perl (2.6.15-2) ... Selecting previously unselected package dpkg-cross. Preparing to unpack .../41-dpkg-cross_2.6.15-2_all.deb ... Unpacking dpkg-cross (2.6.15-2) ... Selecting previously unselected package crossbuild-essential-armel. Preparing to unpack .../42-crossbuild-essential-armel_12.5_all.deb ... Unpacking crossbuild-essential-armel (12.5) ... Selecting previously unselected package sbuild-build-depends-core-dummy:armel. Preparing to unpack .../43-sbuild-build-depends-core-dummy_0.invalid.0_armel.deb ... Unpacking sbuild-build-depends-core-dummy:armel (0.invalid.0) ... Setting up gcc-8-cross-base (8.2.0-11cross1) ... Setting up libconfig-inifiles-perl (3.000001-1) ... Setting up libxml-namespacesupport-perl (1.12-1) ... Setting up libicu63:amd64 (63.1-6) ... Setting up libfile-which-perl (1.23-1) ... Setting up libfile-homedir-perl (1.004-1) ... Setting up linux-libc-dev-armel-cross (4.19.13-1cross1) ... Setting up libyaml-perl (1.27-1) ... Setting up libxml2:amd64 (2.9.4+dfsg1-7+b3) ... Setting up libmagic-mgc (1:5.35-2) ... Setting up libmagic1:amd64 (1:5.35-2) ... Setting up libxml-sax-base-perl (1.09-1) ... Setting up sensible-utils (0.0.12) ... Setting up cross-config (2.6.15-2) ... Setting up libc6-armel-cross (2.28-4cross1) ... Setting up libio-string-perl (1.08-3) ... Setting up liblocale-gettext-perl (1.07-3+b4) ... Setting up gcc-8-arm-linux-gnueabi-base:amd64 (8.2.0-11cross1) ... Setting up binutils-arm-linux-gnueabi (2.31.1-12) ... Setting up libatomic1-armel-cross (8.2.0-11cross1) ... Setting up libgomp1-armel-cross (8.2.0-11cross1) ... Setting up libgcc1-armel-cross (1:8.2.0-11cross1) ... Setting up libc6-dev-armel-cross (2.28-4cross1) ... Setting up file (1:5.35-2) ... Setting up ucf (3.0038+nmu1) ... Setting up libstdc++6-armel-cross (8.2.0-11cross1) ... Setting up cpp-8-arm-linux-gnueabi (8.2.0-11cross1) ... Setting up libasan5-armel-cross (8.2.0-11cross1) ... Setting up libxml-sax-perl (1.00+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up cpp-arm-linux-gnueabi (4:8.2.0-2) ... Setting up libubsan1-armel-cross (8.2.0-11cross1) ... Setting up libgcc-8-dev-armel-cross (8.2.0-11cross1) ... Setting up gcc-8-arm-linux-gnueabi (8.2.0-11cross1) ... Setting up gcc-arm-linux-gnueabi (4:8.2.0-2) ... Setting up libxml-libxml-perl (2.0133+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libstdc++-8-dev-armel-cross (8.2.0-11cross1) ... Setting up libxml-simple-perl (2.25-1) ... Setting up g++-8-arm-linux-gnueabi (8.2.0-11cross1) ... Setting up libconfig-auto-perl (0.44-1) ... Setting up libdebian-dpkgcross-perl (2.6.15-2) ... Setting up g++-arm-linux-gnueabi (4:8.2.0-2) ... Setting up dpkg-cross (2.6.15-2) ... Setting up crossbuild-essential-armel (12.5) ... Setting up sbuild-build-depends-core-dummy:armel (0.invalid.0) ... Processing triggers for libc-bin (2.28-6) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (armel included in any) Setup apt archive ----------------- dpkg-deb: building package 'sbuild-build-depends-essential-dummy' in '/<>/resolver-RYi8td/apt_archive/sbuild-build-depends-essential-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-essential-dummy dpkg-scanpackages: info: Wrote 2 entries to output Packages file. Ign:1 copy:/<>/resolver-RYi8td/apt_archive ./ InRelease Get:2 copy:/<>/resolver-RYi8td/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-RYi8td/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-RYi8td/apt_archive ./ Sources [481 B] Get:5 copy:/<>/resolver-RYi8td/apt_archive ./ Packages [570 B] Fetched 2014 B in 0s (0 B/s) Reading package lists... Reading package lists... Install essential build dependencies (apt-based resolver) --------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-essential-dummy:armel 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 840 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-RYi8td/apt_archive ./ sbuild-build-depends-essential-dummy 0.invalid.0 [840 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 840 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-essential-dummy:armel. (Reading database ... 14844 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-essential-dummy_0.invalid.0_armel.deb ... Unpacking sbuild-build-depends-essential-dummy:armel (0.invalid.0) ... Setting up sbuild-build-depends-essential-dummy:armel (0.invalid.0) ... +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: libc-dev, libstdc++-dev, debhelper (>= 10), dh-exec (>= 0.3), cmake, libnetcdf-dev, libnifti-dev, zlib1g-dev, libhdf5-dev Filtered Build-Depends: libc-dev, libstdc++-dev, debhelper (>= 10), dh-exec (>= 0.3), cmake, libnetcdf-dev, libnifti-dev, zlib1g-dev, libhdf5-dev dpkg-deb: building package 'sbuild-build-depends-libminc-dummy' in '/<>/resolver-RYi8td/apt_archive/sbuild-build-depends-libminc-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-essential-dummy sbuild-build-depends-libminc-dummy dpkg-scanpackages: info: Wrote 3 entries to output Packages file. Ign:1 copy:/<>/resolver-RYi8td/apt_archive ./ InRelease Get:2 copy:/<>/resolver-RYi8td/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-RYi8td/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-RYi8td/apt_archive ./ Sources [668 B] Get:5 copy:/<>/resolver-RYi8td/apt_archive ./ Packages [752 B] Fetched 2383 B in 0s (0 B/s) Reading package lists... Reading package lists... Install libminc build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils cmake cmake-data debhelper dh-autoreconf dh-exec dh-strip-nondeterminism dwz gcc-8-base:armel gettext gettext-base groff-base hdf5-helpers:armel intltool-debian libaec-dev:armel libaec0:armel libarchive-zip-perl libarchive13 libasan5:armel libatomic1:armel libbsd0 libc6:armel libc6-dev:armel libcom-err2:armel libcroco3 libcurl3-gnutls:armel libcurl4 libcurl4-gnutls-dev:armel libdb5.3:armel libelf1 libexpat1 libffi6:armel libfile-stripnondeterminism-perl libgcc-8-dev:armel libgcc1:armel libgcrypt20:armel libgfortran5:armel libglib2.0-0 libgmp10:armel libgnutls30:armel libgomp1:armel libgpg-error0:armel libgssapi-krb5-2 libgssapi-krb5-2:armel libhdf5-103:armel libhdf5-cpp-103:armel libhdf5-dev:armel libhogweed4:armel libidn2-0:armel libjpeg62-turbo:armel libjpeg62-turbo-dev:armel libjsoncpp1 libk5crypto3 libk5crypto3:armel libkeyutils1 libkeyutils1:armel libkrb5-3 libkrb5-3:armel libkrb5support0 libkrb5support0:armel libldap-2.4-2 libldap-2.4-2:armel libldap-common libncurses6 libnetcdf-dev:armel libnetcdf13:armel libnettle6:armel libnghttp2-14 libnghttp2-14:armel libnifti-dev:armel libnifti2:armel libp11-kit0:armel libpipeline1 libprocps7 libpsl5 libpsl5:armel librhash0 librtmp1 librtmp1:armel libsasl2-2 libsasl2-2:armel libsasl2-modules-db libsasl2-modules-db:armel libsigsegv2 libssh2-1 libssh2-1:armel libssl1.1 libssl1.1:armel libstdc++-8-dev:armel libstdc++6:armel libsz2:armel libtasn1-6:armel libtool libubsan1:armel libuchardet0 libunistring2:armel libuv1 linux-libc-dev:armel lsb-base m4 man-db po-debconf procps zlib1g:armel zlib1g-dev:armel Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation cmake-doc ninja-build dh-make gettext-doc libasprintf-dev libgettextpo-dev groff lrzip glibc-doc:armel libc-l10n:armel locales:armel manpages-dev:armel libcurl4-doc:armel libgnutls28-dev:armel libidn11-dev:armel libkrb5-dev:armel libldap2-dev:armel librtmp-dev:armel libssh2-1-dev:armel pkg-config:armel rng-tools:armel gnutls-bin:armel krb5-doc krb5-user krb5-doc:armel krb5-user:armel libhdf5-doc:armel netcdf-bin:armel netcdf-doc:armel libstdc++-8-doc:armel libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx ca-certificates:armel ca-certificates libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libgpg-error-l10n:armel krb5-locales krb5-locales:armel libgpm2 pkg-config:armel publicsuffix publicsuffix:armel libsasl2-modules libsasl2-modules:armel libltdl-dev libmail-sendmail-perl psmisc The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils cmake cmake-data debhelper dh-autoreconf dh-exec dh-strip-nondeterminism dwz gcc-8-base:armel gettext gettext-base groff-base hdf5-helpers:armel intltool-debian libaec-dev:armel libaec0:armel libarchive-zip-perl libarchive13 libasan5:armel libatomic1:armel libbsd0 libc6:armel libc6-dev:armel libcom-err2:armel libcroco3 libcurl3-gnutls:armel libcurl4 libcurl4-gnutls-dev:armel libdb5.3:armel libelf1 libexpat1 libffi6:armel libfile-stripnondeterminism-perl libgcc-8-dev:armel libgcc1:armel libgcrypt20:armel libgfortran5:armel libglib2.0-0 libgmp10:armel libgnutls30:armel libgomp1:armel libgpg-error0:armel libgssapi-krb5-2 libgssapi-krb5-2:armel libhdf5-103:armel libhdf5-cpp-103:armel libhdf5-dev:armel libhogweed4:armel libidn2-0:armel libjpeg62-turbo:armel libjpeg62-turbo-dev:armel libjsoncpp1 libk5crypto3 libk5crypto3:armel libkeyutils1 libkeyutils1:armel libkrb5-3 libkrb5-3:armel libkrb5support0 libkrb5support0:armel libldap-2.4-2 libldap-2.4-2:armel libldap-common libncurses6 libnetcdf-dev:armel libnetcdf13:armel libnettle6:armel libnghttp2-14 libnghttp2-14:armel libnifti-dev:armel libnifti2:armel libp11-kit0:armel libpipeline1 libprocps7 libpsl5 libpsl5:armel librhash0 librtmp1 librtmp1:armel libsasl2-2 libsasl2-2:armel libsasl2-modules-db libsasl2-modules-db:armel libsigsegv2 libssh2-1 libssh2-1:armel libssl1.1 libssl1.1:armel libstdc++-8-dev:armel libstdc++6:armel libsz2:armel libtasn1-6:armel libtool libubsan1:armel libuchardet0 libunistring2:armel libuv1 linux-libc-dev:armel lsb-base m4 man-db po-debconf procps sbuild-build-depends-libminc-dummy:armel zlib1g:armel zlib1g-dev:armel 0 upgraded, 110 newly installed, 0 to remove and 0 not upgraded. Need to get 40.2 MB of archives. After this operation, 157 MB of additional disk space will be used. Get:1 copy:/<>/resolver-RYi8td/apt_archive ./ sbuild-build-depends-libminc-dummy 0.invalid.0 [912 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 libbsd0 amd64 0.9.1-1 [99.3 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 bsdmainutils amd64 11.1.2+b1 [191 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 libuchardet0 amd64 0.0.6-3 [64.9 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 groff-base amd64 1.22.4-2 [917 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 libpipeline1 amd64 1.5.1-1 [31.2 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 man-db amd64 2.8.5-1 [1274 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 libncurses6 amd64 6.1+20181013-1 [102 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 libprocps7 amd64 2:3.3.15-2 [61.7 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 lsb-base all 10.2018112800 [28.3 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 procps amd64 2:3.3.15-2 [259 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 gettext-base amd64 0.19.8.1-9 [123 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 m4 amd64 1.4.18-2 [203 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 autoconf all 2.69-11 [341 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 automake all 1:1.16.1-4 [771 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 autopoint all 0.19.8.1-9 [434 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 cmake-data all 3.13.2-1 [1476 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 libarchive13 amd64 3.3.3-4 [314 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 libkeyutils1 amd64 1.5.9-10 [13.4 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 libkrb5support0 amd64 1.17-1 [65.5 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 libk5crypto3 amd64 1.17-1 [121 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 libssl1.1 amd64 1.1.1a-1 [1527 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 libkrb5-3 amd64 1.17-1 [368 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.17-1 [159 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 libsasl2-modules-db amd64 2.1.27+dfsg-1 [69.0 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 libsasl2-2 amd64 2.1.27+dfsg-1 [106 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 libldap-common all 2.4.47+dfsg-3 [89.4 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 libldap-2.4-2 amd64 2.4.47+dfsg-3 [224 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 libnghttp2-14 amd64 1.36.0-2 [84.9 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 libpsl5 amd64 0.20.2-2 [53.7 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2 [60.5 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 libssh2-1 amd64 1.8.0-2 [138 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 libcurl4 amd64 7.64.0-1 [331 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 libexpat1 amd64 2.2.6-1 [105 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 libjsoncpp1 amd64 1.7.4-3 [75.6 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 librhash0 amd64 1.3.8-1 [122 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 libuv1 amd64 1.24.1-1 [110 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 cmake amd64 3.13.2-1 [3485 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libtool all 2.4.6-9 [547 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 dh-autoreconf all 19 [16.9 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 libarchive-zip-perl all 1.64-1 [96.8 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.1.0-1 [19.5 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 dh-strip-nondeterminism all 1.1.0-1 [12.6 kB] Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 libelf1 amd64 0.175-2 [160 kB] Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 dwz amd64 0.12-3 [78.0 kB] Get:48 http://debian.oregonstate.edu/debian unstable/main amd64 libglib2.0-0 amd64 2.58.3-1 [1258 kB] Get:49 http://debian.oregonstate.edu/debian unstable/main amd64 libcroco3 amd64 0.6.12-3 [145 kB] Get:50 http://debian.oregonstate.edu/debian unstable/main amd64 gettext amd64 0.19.8.1-9 [1303 kB] Get:51 http://debian.oregonstate.edu/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get:52 http://debian.oregonstate.edu/debian unstable/main amd64 po-debconf all 1.0.21 [248 kB] Get:53 http://debian.oregonstate.edu/debian unstable/main amd64 debhelper all 12 [1002 kB] Get:54 http://debian.oregonstate.edu/debian unstable/main amd64 dh-exec amd64 0.23.1 [26.3 kB] Get:55 http://debian.oregonstate.edu/debian unstable/main armel gcc-8-base armel 8.2.0-17 [189 kB] Get:56 http://debian.oregonstate.edu/debian unstable/main armel hdf5-helpers armel 1.10.4+repack-10 [35.2 kB] Get:57 http://debian.oregonstate.edu/debian unstable/main armel libgcc1 armel 1:8.2.0-17 [38.5 kB] Get:58 http://debian.oregonstate.edu/debian unstable/main armel libc6 armel 2.28-6 [2397 kB] Get:59 http://debian.oregonstate.edu/debian unstable/main armel libaec0 armel 1.0.2-1 [21.0 kB] Get:60 http://debian.oregonstate.edu/debian unstable/main armel libsz2 armel 1.0.2-1 [6624 B] Get:61 http://debian.oregonstate.edu/debian unstable/main armel libaec-dev armel 1.0.2-1 [18.8 kB] Get:62 http://debian.oregonstate.edu/debian unstable/main armel libstdc++6 armel 8.2.0-17 [324 kB] Get:63 http://debian.oregonstate.edu/debian unstable/main armel libasan5 armel 8.2.0-17 [318 kB] Get:64 http://debian.oregonstate.edu/debian unstable/main armel libatomic1 armel 8.2.0-17 [8944 B] Get:65 http://debian.oregonstate.edu/debian unstable/main armel linux-libc-dev armel 4.19.16-1 [1113 kB] Get:66 http://debian.oregonstate.edu/debian unstable/main armel libc6-dev armel 2.28-6 [2184 kB] Get:67 http://debian.oregonstate.edu/debian unstable/main armel libcom-err2 armel 1.44.5-1 [67.5 kB] Get:68 http://debian.oregonstate.edu/debian unstable/main armel libgmp10 armel 2:6.1.2+dfsg-4 [197 kB] Get:69 http://debian.oregonstate.edu/debian unstable/main armel libnettle6 armel 3.4.1-1 [224 kB] Get:70 http://debian.oregonstate.edu/debian unstable/main armel libhogweed4 armel 3.4.1-1 [129 kB] Get:71 http://debian.oregonstate.edu/debian unstable/main armel libunistring2 armel 0.9.10-1 [354 kB] Get:72 http://debian.oregonstate.edu/debian unstable/main armel libidn2-0 armel 2.0.5-1 [73.9 kB] Get:73 http://debian.oregonstate.edu/debian unstable/main armel libffi6 armel 3.2.1-9 [18.7 kB] Get:74 http://debian.oregonstate.edu/debian unstable/main armel libp11-kit0 armel 0.23.14-2 [291 kB] Get:75 http://debian.oregonstate.edu/debian unstable/main armel libtasn1-6 armel 4.13-3 [46.5 kB] Get:76 http://debian.oregonstate.edu/debian unstable/main armel libgnutls30 armel 3.6.6-2 [1036 kB] Get:77 http://debian.oregonstate.edu/debian unstable/main armel libkeyutils1 armel 1.5.9-10 [12.4 kB] Get:78 http://debian.oregonstate.edu/debian unstable/main armel libkrb5support0 armel 1.17-1 [62.1 kB] Get:79 http://debian.oregonstate.edu/debian unstable/main armel libk5crypto3 armel 1.17-1 [118 kB] Get:80 http://debian.oregonstate.edu/debian unstable/main armel libssl1.1 armel 1.1.1a-1 [1263 kB] Get:81 http://debian.oregonstate.edu/debian unstable/main armel libkrb5-3 armel 1.17-1 [319 kB] Get:82 http://debian.oregonstate.edu/debian unstable/main armel libgssapi-krb5-2 armel 1.17-1 [136 kB] Get:83 http://debian.oregonstate.edu/debian unstable/main armel libdb5.3 armel 5.3.28+dfsg1-0.3 [572 kB] Get:84 http://debian.oregonstate.edu/debian unstable/main armel libsasl2-modules-db armel 2.1.27+dfsg-1 [67.4 kB] Get:85 http://debian.oregonstate.edu/debian unstable/main armel libsasl2-2 armel 2.1.27+dfsg-1 [98.4 kB] Get:86 http://debian.oregonstate.edu/debian unstable/main armel libldap-2.4-2 armel 2.4.47+dfsg-3 [200 kB] Get:87 http://debian.oregonstate.edu/debian unstable/main armel libnghttp2-14 armel 1.36.0-2 [73.6 kB] Get:88 http://debian.oregonstate.edu/debian unstable/main armel libpsl5 armel 0.20.2-2 [52.5 kB] Get:89 http://debian.oregonstate.edu/debian unstable/main armel zlib1g armel 1:1.2.11.dfsg-1 [86.5 kB] Get:90 http://debian.oregonstate.edu/debian unstable/main armel librtmp1 armel 2.4+20151223.gitfa8646d.1-2 [54.8 kB] Get:91 http://debian.oregonstate.edu/debian unstable/main armel libgpg-error0 armel 1.35-1 [62.0 kB] Get:92 http://debian.oregonstate.edu/debian unstable/main armel libgcrypt20 armel 1.8.4-5 [482 kB] Get:93 http://debian.oregonstate.edu/debian unstable/main armel libssh2-1 armel 1.8.0-2 [126 kB] Get:94 http://debian.oregonstate.edu/debian unstable/main armel libcurl3-gnutls armel 7.64.0-1 [291 kB] Get:95 http://debian.oregonstate.edu/debian unstable/main armel libcurl4-gnutls-dev armel 7.64.0-1 [386 kB] Get:96 http://debian.oregonstate.edu/debian unstable/main armel libgomp1 armel 8.2.0-17 [67.1 kB] Get:97 http://debian.oregonstate.edu/debian unstable/main armel libubsan1 armel 8.2.0-17 [104 kB] Get:98 http://debian.oregonstate.edu/debian unstable/main armel libgcc-8-dev armel 8.2.0-17 [601 kB] Get:99 http://debian.oregonstate.edu/debian unstable/main armel libgfortran5 armel 8.2.0-17 [216 kB] Get:100 http://debian.oregonstate.edu/debian unstable/main armel libhdf5-103 armel 1.10.4+repack-10 [1258 kB] Get:101 http://debian.oregonstate.edu/debian unstable/main armel libhdf5-cpp-103 armel 1.10.4+repack-10 [121 kB] Get:102 http://debian.oregonstate.edu/debian unstable/main armel zlib1g-dev armel 1:1.2.11.dfsg-1 [206 kB] Get:103 http://debian.oregonstate.edu/debian unstable/main armel libjpeg62-turbo armel 1:1.5.2-2+b1 [112 kB] Get:104 http://debian.oregonstate.edu/debian unstable/main armel libjpeg62-turbo-dev armel 1:1.5.2-2+b1 [182 kB] Get:105 http://debian.oregonstate.edu/debian unstable/main armel libhdf5-dev armel 1.10.4+repack-10 [2495 kB] Get:106 http://debian.oregonstate.edu/debian unstable/main armel libnetcdf13 armel 1:4.6.2-1 [353 kB] Get:107 http://debian.oregonstate.edu/debian unstable/main armel libnetcdf-dev armel 1:4.6.2-1 [82.7 kB] Get:108 http://debian.oregonstate.edu/debian unstable/main armel libnifti2 armel 2.0.0-3 [104 kB] Get:109 http://debian.oregonstate.edu/debian unstable/main armel libnifti-dev armel 2.0.0-3 [137 kB] Get:110 http://debian.oregonstate.edu/debian unstable/main armel libstdc++-8-dev armel 8.2.0-17 [1565 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 40.2 MB in 1s (70.1 MB/s) Selecting previously unselected package libbsd0:amd64. (Reading database ... 14844 files and directories currently installed.) Preparing to unpack .../000-libbsd0_0.9.1-1_amd64.deb ... Unpacking libbsd0:amd64 (0.9.1-1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../001-bsdmainutils_11.1.2+b1_amd64.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../002-libuchardet0_0.0.6-3_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../003-groff-base_1.22.4-2_amd64.deb ... Unpacking groff-base (1.22.4-2) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../004-libpipeline1_1.5.1-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.1-1) ... Selecting previously unselected package man-db. Preparing to unpack .../005-man-db_2.8.5-1_amd64.deb ... Unpacking man-db (2.8.5-1) ... 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Unpacking libgssapi-krb5-2:amd64 (1.17-1) ... Selecting previously unselected package libsasl2-modules-db:amd64. Preparing to unpack .../025-libsasl2-modules-db_2.1.27+dfsg-1_amd64.deb ... Unpacking libsasl2-modules-db:amd64 (2.1.27+dfsg-1) ... Selecting previously unselected package libsasl2-2:amd64. Preparing to unpack .../026-libsasl2-2_2.1.27+dfsg-1_amd64.deb ... Unpacking libsasl2-2:amd64 (2.1.27+dfsg-1) ... Selecting previously unselected package libldap-common. Preparing to unpack .../027-libldap-common_2.4.47+dfsg-3_all.deb ... Unpacking libldap-common (2.4.47+dfsg-3) ... Selecting previously unselected package libldap-2.4-2:amd64. Preparing to unpack .../028-libldap-2.4-2_2.4.47+dfsg-3_amd64.deb ... Unpacking libldap-2.4-2:amd64 (2.4.47+dfsg-3) ... Selecting previously unselected package libnghttp2-14:amd64. Preparing to unpack .../029-libnghttp2-14_1.36.0-2_amd64.deb ... Unpacking libnghttp2-14:amd64 (1.36.0-2) ... Selecting previously unselected package libpsl5:amd64. 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Unpacking libnettle6:armel (3.4.1-1) ... Selecting previously unselected package libhogweed4:armel. Preparing to unpack .../068-libhogweed4_3.4.1-1_armel.deb ... Unpacking libhogweed4:armel (3.4.1-1) ... Selecting previously unselected package libunistring2:armel. Preparing to unpack .../069-libunistring2_0.9.10-1_armel.deb ... Unpacking libunistring2:armel (0.9.10-1) ... Selecting previously unselected package libidn2-0:armel. Preparing to unpack .../070-libidn2-0_2.0.5-1_armel.deb ... Unpacking libidn2-0:armel (2.0.5-1) ... Selecting previously unselected package libffi6:armel. Preparing to unpack .../071-libffi6_3.2.1-9_armel.deb ... Unpacking libffi6:armel (3.2.1-9) ... Selecting previously unselected package libp11-kit0:armel. Preparing to unpack .../072-libp11-kit0_0.23.14-2_armel.deb ... Unpacking libp11-kit0:armel (0.23.14-2) ... Selecting previously unselected package libtasn1-6:armel. Preparing to unpack .../073-libtasn1-6_4.13-3_armel.deb ... Unpacking libtasn1-6:armel (4.13-3) ... Selecting previously unselected package libgnutls30:armel. Preparing to unpack .../074-libgnutls30_3.6.6-2_armel.deb ... Unpacking libgnutls30:armel (3.6.6-2) ... Selecting previously unselected package libkeyutils1:armel. Preparing to unpack .../075-libkeyutils1_1.5.9-10_armel.deb ... Unpacking libkeyutils1:armel (1.5.9-10) ... Selecting previously unselected package libkrb5support0:armel. Preparing to unpack .../076-libkrb5support0_1.17-1_armel.deb ... Unpacking libkrb5support0:armel (1.17-1) ... Selecting previously unselected package libk5crypto3:armel. Preparing to unpack .../077-libk5crypto3_1.17-1_armel.deb ... Unpacking libk5crypto3:armel (1.17-1) ... Selecting previously unselected package libssl1.1:armel. Preparing to unpack .../078-libssl1.1_1.1.1a-1_armel.deb ... Unpacking libssl1.1:armel (1.1.1a-1) ... Selecting previously unselected package libkrb5-3:armel. Preparing to unpack .../079-libkrb5-3_1.17-1_armel.deb ... Unpacking libkrb5-3:armel (1.17-1) ... Selecting previously unselected package libgssapi-krb5-2:armel. Preparing to unpack .../080-libgssapi-krb5-2_1.17-1_armel.deb ... Unpacking libgssapi-krb5-2:armel (1.17-1) ... Selecting previously unselected package libdb5.3:armel. Preparing to unpack .../081-libdb5.3_5.3.28+dfsg1-0.3_armel.deb ... Unpacking libdb5.3:armel (5.3.28+dfsg1-0.3) ... Selecting previously unselected package libsasl2-modules-db:armel. Preparing to unpack .../082-libsasl2-modules-db_2.1.27+dfsg-1_armel.deb ... Unpacking libsasl2-modules-db:armel (2.1.27+dfsg-1) ... Selecting previously unselected package libsasl2-2:armel. Preparing to unpack .../083-libsasl2-2_2.1.27+dfsg-1_armel.deb ... Unpacking libsasl2-2:armel (2.1.27+dfsg-1) ... Selecting previously unselected package libldap-2.4-2:armel. Preparing to unpack .../084-libldap-2.4-2_2.4.47+dfsg-3_armel.deb ... Unpacking libldap-2.4-2:armel (2.4.47+dfsg-3) ... Selecting previously unselected package libnghttp2-14:armel. 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Selecting previously unselected package libssh2-1:armel. Preparing to unpack .../091-libssh2-1_1.8.0-2_armel.deb ... Unpacking libssh2-1:armel (1.8.0-2) ... Selecting previously unselected package libcurl3-gnutls:armel. Preparing to unpack .../092-libcurl3-gnutls_7.64.0-1_armel.deb ... Unpacking libcurl3-gnutls:armel (7.64.0-1) ... Selecting previously unselected package libcurl4-gnutls-dev:armel. Preparing to unpack .../093-libcurl4-gnutls-dev_7.64.0-1_armel.deb ... Unpacking libcurl4-gnutls-dev:armel (7.64.0-1) ... Selecting previously unselected package libgomp1:armel. Preparing to unpack .../094-libgomp1_8.2.0-17_armel.deb ... Unpacking libgomp1:armel (8.2.0-17) ... Selecting previously unselected package libubsan1:armel. Preparing to unpack .../095-libubsan1_8.2.0-17_armel.deb ... Unpacking libubsan1:armel (8.2.0-17) ... Selecting previously unselected package libgcc-8-dev:armel. Preparing to unpack .../096-libgcc-8-dev_8.2.0-17_armel.deb ... 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Preparing to unpack .../107-libnifti-dev_2.0.0-3_armel.deb ... Unpacking libnifti-dev:armel (2.0.0-3) ... Selecting previously unselected package libstdc++-8-dev:armel. Preparing to unpack .../108-libstdc++-8-dev_8.2.0-17_armel.deb ... Unpacking libstdc++-8-dev:armel (8.2.0-17) ... Selecting previously unselected package sbuild-build-depends-libminc-dummy:armel. Preparing to unpack .../109-sbuild-build-depends-libminc-dummy_0.invalid.0_armel.deb ... Unpacking sbuild-build-depends-libminc-dummy:armel (0.invalid.0) ... Setting up libexpat1:amd64 (2.2.6-1) ... Setting up libarchive-zip-perl (1.64-1) ... Setting up libnghttp2-14:amd64 (1.36.0-2) ... Setting up libprocps7:amd64 (2:3.3.15-2) ... Setting up libsigsegv2:amd64 (2.12-2) ... Setting up libldap-common (2.4.47+dfsg-3) ... Setting up libarchive13:amd64 (3.3.3-4) ... Setting up libuv1:amd64 (1.24.1-1) ... Setting up libpsl5:amd64 (0.20.2-2) ... Setting up libelf1:amd64 (0.175-2) ... Setting up libglib2.0-0:amd64 (2.58.3-1) ... No schema files found: doing nothing. Setting up libsasl2-modules-db:amd64 (2.1.27+dfsg-1) ... Setting up linux-libc-dev:armel (4.19.16-1) ... Setting up libsasl2-2:amd64 (2.1.27+dfsg-1) ... Setting up gettext-base (0.19.8.1-9) ... Setting up cmake-data (3.13.2-1) ... Setting up libpipeline1:amd64 (1.5.1-1) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2) ... Setting up m4 (1.4.18-2) ... Setting up libbsd0:amd64 (0.9.1-1) ... Setting up libuchardet0:amd64 (0.0.6-3) ... Setting up lsb-base (10.2018112800) ... Setting up librhash0:amd64 (1.3.8-1) ... Setting up libcroco3:amd64 (0.6.12-3) ... Setting up libssh2-1:amd64 (1.8.0-2) ... Setting up dwz (0.12-3) ... Setting up autotools-dev (20180224.1) ... Setting up libldap-2.4-2:amd64 (2.4.47+dfsg-3) ... Setting up libssl1.1:amd64 (1.1.1a-1) ... Setting up gcc-8-base:armel (8.2.0-17) ... Setting up libkeyutils1:amd64 (1.5.9-10) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up hdf5-helpers:armel (1.10.4+repack-10) ... Setting up libncurses6:amd64 (6.1+20181013-1) ... Setting up autopoint (0.19.8.1-9) ... Setting up libfile-stripnondeterminism-perl (1.1.0-1) ... Setting up libjsoncpp1:amd64 (1.7.4-3) ... Setting up libtool (2.4.6-9) ... Setting up gettext (0.19.8.1-9) ... Setting up groff-base (1.22.4-2) ... Setting up autoconf (2.69-11) ... Setting up libkrb5support0:amd64 (1.17-1) ... Setting up procps (2:3.3.15-2) ... update-alternatives: using /usr/bin/w.procps to provide /usr/bin/w (w) in auto mode Setting up intltool-debian (0.35.0+20060710.5) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up man-db (2.8.5-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libk5crypto3:amd64 (1.17-1) ... Setting up po-debconf (1.0.21) ... Setting up libkrb5-3:amd64 (1.17-1) ... Setting up libgssapi-krb5-2:amd64 (1.17-1) ... Setting up libcurl4:amd64 (7.64.0-1) ... Setting up cmake (3.13.2-1) ... Setting up dh-autoreconf (19) ... Setting up libc6:armel (2.28-6) ... Setting up libtasn1-6:armel (4.13-3) ... Setting up libgpg-error0:armel (1.35-1) ... Setting up libgmp10:armel (2:6.1.2+dfsg-4) ... Setting up libssl1.1:armel (1.1.1a-1) ... Setting up libkeyutils1:armel (1.5.9-10) ... Setting up libc6-dev:armel (2.28-6) ... Setting up libgcc1:armel (1:8.2.0-17) ... Setting up libcom-err2:armel (1.44.5-1) ... Setting up libgomp1:armel (8.2.0-17) ... Setting up libatomic1:armel (8.2.0-17) ... Setting up debhelper (12) ... Setting up libunistring2:armel (0.9.10-1) ... Setting up libnettle6:armel (3.4.1-1) ... Setting up libaec0:armel (1.0.2-1) ... Setting up libidn2-0:armel (2.0.5-1) ... Setting up libjpeg62-turbo:armel (1:1.5.2-2+b1) ... Setting up libnghttp2-14:armel (1.36.0-2) ... Setting up libgcrypt20:armel (1.8.4-5) ... Setting up libdb5.3:armel (5.3.28+dfsg1-0.3) ... Setting up zlib1g:armel (1:1.2.11.dfsg-1) ... Setting up libpsl5:armel (0.20.2-2) ... Setting up libsasl2-modules-db:armel (2.1.27+dfsg-1) ... Setting up libsasl2-2:armel (2.1.27+dfsg-1) ... Setting up libkrb5support0:armel (1.17-1) ... Setting up libhogweed4:armel (3.4.1-1) ... Setting up dh-strip-nondeterminism (1.1.0-1) ... Setting up libssh2-1:armel (1.8.0-2) ... Setting up dh-exec (0.23.1) ... Setting up libstdc++6:armel (8.2.0-17) ... Setting up libffi6:armel (3.2.1-9) ... Setting up libjpeg62-turbo-dev:armel (1:1.5.2-2+b1) ... Setting up libasan5:armel (8.2.0-17) ... Setting up libgfortran5:armel (8.2.0-17) ... Setting up libsz2:armel (1.0.2-1) ... Setting up zlib1g-dev:armel (1:1.2.11.dfsg-1) ... Setting up libubsan1:armel (8.2.0-17) ... Setting up libk5crypto3:armel (1.17-1) ... Setting up libnifti2:armel (2.0.0-3) ... Setting up libaec-dev:armel (1.0.2-1) ... Setting up libhdf5-103:armel (1.10.4+repack-10) ... Setting up libnifti-dev:armel (2.0.0-3) ... Setting up libp11-kit0:armel (0.23.14-2) ... Setting up libgcc-8-dev:armel (8.2.0-17) ... Setting up libkrb5-3:armel (1.17-1) ... Setting up libstdc++-8-dev:armel (8.2.0-17) ... Setting up libgnutls30:armel (3.6.6-2) ... Setting up libhdf5-cpp-103:armel (1.10.4+repack-10) ... Setting up libhdf5-dev:armel (1.10.4+repack-10) ... update-alternatives: using /usr/lib/arm-linux-gnueabi/pkgconfig/hdf5-serial.pc to provide /usr/lib/arm-linux-gnueabi/pkgconfig/hdf5.pc (hdf5.pc) in auto mode Setting up librtmp1:armel (2.4+20151223.gitfa8646d.1-2) ... Setting up libgssapi-krb5-2:armel (1.17-1) ... Setting up libldap-2.4-2:armel (2.4.47+dfsg-3) ... Setting up libcurl3-gnutls:armel (7.64.0-1) ... Setting up libnetcdf13:armel (1:4.6.2-1) ... Setting up libcurl4-gnutls-dev:armel (7.64.0-1) ... Setting up libnetcdf-dev:armel (1:4.6.2-1) ... Setting up sbuild-build-depends-libminc-dummy:armel (0.invalid.0) ... Processing triggers for libc-bin (2.28-6) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.9.0-8-amd64 amd64 (x86_64) Toolchain package versions: binutils_2.31.1-12 dpkg-dev_1.19.4 g++-8_8.2.0-17 gcc-8_8.2.0-17 libc6-dev_2.28-6 libstdc++-8-dev_8.2.0-17 libstdc++-8-dev-armel-cross_8.2.0-11cross1 libstdc++6_8.2.0-17 libstdc++6-armel-cross_8.2.0-11cross1 linux-libc-dev_4.19.16-1 Package versions: adduser_3.118 apt_1.8.0~rc2 autoconf_2.69-11 automake_1:1.16.1-4 autopoint_0.19.8.1-9 autotools-dev_20180224.1 base-files_10.1 base-passwd_3.5.45 bash_5.0-2 binutils_2.31.1-12 binutils-arm-linux-gnueabi_2.31.1-12 binutils-common_2.31.1-12 binutils-x86-64-linux-gnu_2.31.1-12 bsdmainutils_11.1.2+b1 bsdutils_1:2.33.1-0.1 build-essential_12.5 bzip2_1.0.6-9 cmake_3.13.2-1 cmake-data_3.13.2-1 coreutils_8.30-1 cpp_4:8.2.0-2 cpp-8_8.2.0-17 cpp-8-arm-linux-gnueabi_8.2.0-11cross1 cpp-arm-linux-gnueabi_4:8.2.0-2 cross-config_2.6.15-2 crossbuild-essential-armel_12.5 dash_0.5.10.2-5 debconf_1.5.70 debhelper_12 debian-archive-keyring_2018.1 debianutils_4.8.6.1 dh-autoreconf_19 dh-exec_0.23.1 dh-strip-nondeterminism_1.1.0-1 diffutils_1:3.6-1 dpkg_1.19.4 dpkg-cross_2.6.15-2 dpkg-dev_1.19.4 dwz_0.12-3 e2fsprogs_1.44.5-1 fakeroot_1.23-1 fdisk_2.33.1-0.1 file_1:5.35-2 findutils_4.6.0+git+20190105-2 g++_4:8.2.0-2 g++-8_8.2.0-17 g++-8-arm-linux-gnueabi_8.2.0-11cross1 g++-arm-linux-gnueabi_4:8.2.0-2 gcc_4:8.2.0-2 gcc-8_8.2.0-17 gcc-8-arm-linux-gnueabi_8.2.0-11cross1 gcc-8-arm-linux-gnueabi-base_8.2.0-11cross1 gcc-8-base_8.2.0-17 gcc-8-cross-base_8.2.0-11cross1 gcc-arm-linux-gnueabi_4:8.2.0-2 gettext_0.19.8.1-9 gettext-base_0.19.8.1-9 gpgv_2.2.12-1 grep_3.3-1 groff-base_1.22.4-2 gzip_1.9-3 hdf5-helpers_1.10.4+repack-10 hostname_3.21 init-system-helpers_1.56+nmu1 intltool-debian_0.35.0+20060710.5 libacl1_2.2.52-3+b1 libaec-dev_1.0.2-1 libaec0_1.0.2-1 libapt-pkg5.0_1.8.0~rc2 libarchive-zip-perl_1.64-1 libarchive13_3.3.3-4 libasan5_8.2.0-17 libasan5-armel-cross_8.2.0-11cross1 libatomic1_8.2.0-17 libatomic1-armel-cross_8.2.0-11cross1 libattr1_1:2.4.47-2+b2 libaudit-common_1:2.8.4-2 libaudit1_1:2.8.4-2 libbinutils_2.31.1-12 libblkid1_2.33.1-0.1 libbsd0_0.9.1-1 libbz2-1.0_1.0.6-9 libc-bin_2.28-6 libc-dev-bin_2.28-6 libc6_2.28-6 libc6-armel-cross_2.28-4cross1 libc6-dev_2.28-6 libc6-dev-armel-cross_2.28-4cross1 libcap-ng0_0.7.9-2 libcc1-0_8.2.0-17 libcom-err2_1.44.5-1 libconfig-auto-perl_0.44-1 libconfig-inifiles-perl_3.000001-1 libcroco3_0.6.12-3 libcurl3-gnutls_7.64.0-1 libcurl4_7.64.0-1 libcurl4-gnutls-dev_7.64.0-1 libdb5.3_5.3.28+dfsg1-0.3 libdebconfclient0_0.246 libdebian-dpkgcross-perl_2.6.15-2 libdpkg-perl_1.19.4 libelf1_0.175-2 libexpat1_2.2.6-1 libext2fs2_1.44.5-1 libfakeroot_1.23-1 libfdisk1_2.33.1-0.1 libffi6_3.2.1-9 libfile-homedir-perl_1.004-1 libfile-stripnondeterminism-perl_1.1.0-1 libfile-which-perl_1.23-1 libgcc-8-dev_8.2.0-17 libgcc-8-dev-armel-cross_8.2.0-11cross1 libgcc1_1:8.2.0-17 libgcc1-armel-cross_1:8.2.0-11cross1 libgcrypt20_1.8.4-5 libgdbm-compat4_1.18.1-2 libgdbm6_1.18.1-2 libgfortran5_8.2.0-17 libglib2.0-0_2.58.3-1 libgmp10_2:6.1.2+dfsg-4 libgnutls30_3.6.6-2 libgomp1_8.2.0-17 libgomp1-armel-cross_8.2.0-11cross1 libgpg-error0_1.35-1 libgssapi-krb5-2_1.17-1 libhdf5-103_1.10.4+repack-10 libhdf5-cpp-103_1.10.4+repack-10 libhdf5-dev_1.10.4+repack-10 libhogweed4_3.4.1-1 libicu63_63.1-6 libidn2-0_2.0.5-1 libio-string-perl_1.08-3 libisl19_0.20-2 libitm1_8.2.0-17 libjpeg62-turbo_1:1.5.2-2+b1 libjpeg62-turbo-dev_1:1.5.2-2+b1 libjsoncpp1_1.7.4-3 libk5crypto3_1.17-1 libkeyutils1_1.5.9-10 libkrb5-3_1.17-1 libkrb5support0_1.17-1 libldap-2.4-2_2.4.47+dfsg-3 libldap-common_2.4.47+dfsg-3 liblocale-gettext-perl_1.07-3+b4 liblsan0_8.2.0-17 liblz4-1_1.8.3-1 liblzma5_5.2.4-1 libmagic-mgc_1:5.35-2 libmagic1_1:5.35-2 libmount1_2.33.1-0.1 libmpc3_1.1.0-1 libmpfr6_4.0.2-1 libmpx2_8.2.0-17 libncurses6_6.1+20181013-1 libncursesw6_6.1+20181013-1 libnetcdf-dev_1:4.6.2-1 libnetcdf13_1:4.6.2-1 libnettle6_3.4.1-1 libnghttp2-14_1.36.0-2 libnifti-dev_2.0.0-3 libnifti2_2.0.0-3 libp11-kit0_0.23.14-2 libpam-modules_1.1.8-4 libpam-modules-bin_1.1.8-4 libpam-runtime_1.1.8-4 libpam0g_1.1.8-4 libpcre3_2:8.39-11 libperl5.28_5.28.1-4 libpipeline1_1.5.1-1 libprocps7_2:3.3.15-2 libpsl5_0.20.2-2 libquadmath0_8.2.0-17 librhash0_1.3.8-1 librtmp1_2.4+20151223.gitfa8646d.1-2 libsasl2-2_2.1.27+dfsg-1 libsasl2-modules-db_2.1.27+dfsg-1 libseccomp2_2.3.3-3 libselinux1_2.8-1+b1 libsemanage-common_2.8-2 libsemanage1_2.8-2 libsepol1_2.8-1 libsigsegv2_2.12-2 libsmartcols1_2.33.1-0.1 libss2_1.44.5-1 libssh2-1_1.8.0-2 libssl1.1_1.1.1a-1 libstdc++-8-dev_8.2.0-17 libstdc++-8-dev-armel-cross_8.2.0-11cross1 libstdc++6_8.2.0-17 libstdc++6-armel-cross_8.2.0-11cross1 libsystemd0_240-5 libsz2_1.0.2-1 libtasn1-6_4.13-3 libtinfo6_6.1+20181013-1 libtool_2.4.6-9 libtsan0_8.2.0-17 libubsan1_8.2.0-17 libubsan1-armel-cross_8.2.0-11cross1 libuchardet0_0.0.6-3 libudev1_240-5 libunistring2_0.9.10-1 libuuid1_2.33.1-0.1 libuv1_1.24.1-1 libxml-libxml-perl_2.0133+dfsg-1 libxml-namespacesupport-perl_1.12-1 libxml-sax-base-perl_1.09-1 libxml-sax-perl_1.00+dfsg-1 libxml-simple-perl_2.25-1 libxml2_2.9.4+dfsg1-7+b3 libyaml-perl_1.27-1 libzstd1_1.3.8+dfsg-3 linux-libc-dev_4.19.16-1 linux-libc-dev-armel-cross_4.19.13-1cross1 login_1:4.5-1.1 lsb-base_10.2018112800 m4_1.4.18-2 make_4.2.1-1.2 man-db_2.8.5-1 mawk_1.3.3-17+b3 mount_2.33.1-0.1 ncurses-base_6.1+20181013-1 ncurses-bin_6.1+20181013-1 passwd_1:4.5-1.1 patch_2.7.6-3 perl_5.28.1-4 perl-base_5.28.1-4 perl-modules-5.28_5.28.1-4 po-debconf_1.0.21 procps_2:3.3.15-2 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-essential-dummy_0.invalid.0 sbuild-build-depends-libminc-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12 sysvinit-utils_2.93-6 tar_1.30+dfsg-5 tzdata_2018i-1 ucf_3.0038+nmu1 util-linux_2.33.1-0.1 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-1 zlib1g-dev_1:1.2.11.dfsg-1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Thu Aug 30 16:54:41 2018 UTC gpgv: using RSA key 2ED459C30E8DB8A8D93CA77A97F2D4FCA09F304E gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./libminc_2.4.03-2.dsc dpkg-source: info: extracting libminc in /<> dpkg-source: info: unpacking libminc_2.4.03.orig.tar.gz dpkg-source: info: unpacking libminc_2.4.03-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying build-using-system-find-dot-cmake dpkg-source: info: applying fix-uselibminc-cmake dpkg-source: info: applying netcdf-4.6.patch dpkg-source: info: applying remove-rpath.patch dpkg-source: info: applying initialize_arrays_in_tests.patch dpkg-source: info: applying disable-dimension-test.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.armel DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=POSIX LOGNAME=helmut PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1003 SCHROOT_GROUP=helmut SCHROOT_SESSION_ID=unstable-amd64-sbuild-711ccf75-5b5c-4ce8-a7de-c5a0deaa9713 SCHROOT_UID=1003 SCHROOT_USER=helmut SHELL=/bin/sh USER=helmut dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package libminc dpkg-buildpackage: info: source version 2.4.03-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Gert Wollny dpkg-architecture: warning: specified GNU system type arm-linux-gnueabi does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture armel fakeroot debian/rules clean dh clean dh_clean debian/rules build-arch dh build-arch dh_update_autotools_config -a dh_autoreconf -a debian/rules override_dh_auto_configure make[1]: Entering directory '/<>' rm -f cmake-modules/*HDF5* dh_auto_configure -- -DLIB_SUFFIX=/arm-linux-gnueabi -DBUILD_TESTING:BOOL=ON -DLIBMINC_BUILD_EZMINC_EXAMPLES:BOOL=ON -DLIBMINC_BUILD_SHARED_LIBS:BOOL=ON -DLIBMINC_MINC1_SUPPORT:BOOL=ON -DLIBMINC_USE_SYSTEM_NIFTI:BOOL=ON cd obj-arm-linux-gnueabi && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_SYSTEM_NAME=Linux -DCMAKE_SYSTEM_PROCESSOR=arm -DCMAKE_C_COMPILER=arm-linux-gnueabi-gcc -DCMAKE_CXX_COMPILER=arm-linux-gnueabi-g\+\+ -DPKG_CONFIG_EXECUTABLE=/usr/bin/arm-linux-gnueabi-pkg-config -DPKGCONFIG_EXECUTABLE=/usr/bin/arm-linux-gnueabi-pkg-config -DQMAKE_EXECUTABLE=/usr/bin/arm-linux-gnueabi-qmake -DCMAKE_INSTALL_LIBDIR=lib/arm-linux-gnueabi -DLIB_SUFFIX=/arm-linux-gnueabi -DBUILD_TESTING:BOOL=ON -DLIBMINC_BUILD_EZMINC_EXAMPLES:BOOL=ON -DLIBMINC_BUILD_SHARED_LIBS:BOOL=ON -DLIBMINC_MINC1_SUPPORT:BOOL=ON -DLIBMINC_USE_SYSTEM_NIFTI:BOOL=ON .. -- The C compiler identification is GNU 8.2.0 -- The CXX compiler identification is GNU 8.2.0 -- Check for working C compiler: /usr/bin/arm-linux-gnueabi-gcc -- Check for working C compiler: /usr/bin/arm-linux-gnueabi-gcc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/arm-linux-gnueabi-g++ -- Check for working CXX compiler: /usr/bin/arm-linux-gnueabi-g++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found NetCDF headers: /usr/include -- Found NetCDF library: /usr/lib/arm-linux-gnueabi/libnetcdf.so -- Found ZLIB: /usr/lib/arm-linux-gnueabi/libz.so (found version "1.2.11") -- HDF5: Using hdf5 compiler wrapper to determine C configuration -- Found HDF5: /usr/lib/arm-linux-gnueabi/hdf5/serial/libhdf5.so;/usr/lib/arm-linux-gnueabi/libpthread.so;/usr/lib/arm-linux-gnueabi/libsz.so;/usr/lib/arm-linux-gnueabi/libz.so;/usr/lib/arm-linux-gnueabi/libdl.so;/usr/lib/arm-linux-gnueabi/libm.so (found version "1.10.4") found components: C -- Looking for mkstemp -- Looking for mkstemp - found -- Looking for tmpnam -- Looking for tmpnam - found -- Looking for tempnam -- Looking for tempnam - found -- Looking for strerror -- Looking for strerror - found -- Looking for popen -- Looking for popen - found -- Looking for fork -- Looking for fork - found -- Looking for vfork -- Looking for vfork - found -- Looking for fdopen -- Looking for fdopen - found -- Looking for strdup -- Looking for strdup - found -- Looking for getpwnam -- Looking for getpwnam - found -- Looking for select -- Looking for select - found -- Looking for sysconf -- Looking for sysconf - found -- Looking for system -- Looking for system - found -- Looking for rint -- Looking for rint - found -- Looking for copysign -- Looking for copysign - found -- Looking for round -- Looking for round - found -- Looking for srand48 -- Looking for srand48 - found -- Looking for drand48 -- Looking for drand48 - found -- Looking for sleep -- Looking for sleep - found -- Looking for gettimeofday -- Looking for gettimeofday - found -- Looking for clock_gettime in rt -- Looking for clock_gettime in rt - found -- Looking for include file float.h -- Looking for include file float.h - found -- Looking for include file sys/dir.h -- Looking for include file sys/dir.h - found -- Looking for include file sys/ndir.h -- Looking for include file sys/ndir.h - not found -- Looking for include file sys/stat.h -- Looking for include file sys/stat.h - found -- Looking for include file sys/types.h -- Looking for include file sys/types.h - found -- Looking for include file sys/wait.h -- Looking for include file sys/wait.h - found -- Looking for include file sys/time.h -- Looking for include file sys/time.h - found -- Looking for include file time.h -- Looking for include file time.h - found -- Looking for include file values.h -- Looking for include file values.h - found -- Looking for include file unistd.h -- Looking for include file unistd.h - found -- Looking for include file dirent.h -- Looking for include file dirent.h - found -- Looking for include file memory.h -- Looking for include file memory.h - found -- Looking for include file stdlib.h -- Looking for include file stdlib.h - found -- Looking for include file fcntl.h -- Looking for include file fcntl.h - found -- Looking for include file dlfcn.h -- Looking for include file dlfcn.h - found -- Looking for include file vfork.h -- Looking for include file vfork.h - not found -- Looking for include file inttypes.h -- Looking for include file inttypes.h - found -- Looking for include file string.h -- Looking for include file string.h - found -- Looking for include file strings.h -- Looking for include file strings.h - found -- Looking for include file pwd.h -- Looking for include file pwd.h - found -- Looking for include file sys/select.h -- Looking for include file sys/select.h - found -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_SYSCONFDIR PKGCONFIG_EXECUTABLE PKG_CONFIG_EXECUTABLE QMAKE_EXECUTABLE -- Build files have been written to: /<>/obj-arm-linux-gnueabi make[1]: Leaving directory '/<>' dh_auto_build -a cd obj-arm-linux-gnueabi && make -j1 PKG_CONFIG=arm-linux-gnueabi-pkg-config CXX=arm-linux-gnueabi-g\+\+ CC=arm-linux-gnueabi-gcc make[1]: Entering directory '/<>/obj-arm-linux-gnueabi' /usr/bin/cmake -S/<> -B/<>/obj-arm-linux-gnueabi --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/obj-arm-linux-gnueabi/CMakeFiles /<>/obj-arm-linux-gnueabi/CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/<>/obj-arm-linux-gnueabi' make -f CMakeFiles/minc2_static.dir/build.make CMakeFiles/minc2_static.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/CMakeFiles/minc2_static.dir/DependInfo.cmake --color= Scanning dependencies of target minc2_static make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f CMakeFiles/minc2_static.dir/build.make CMakeFiles/minc2_static.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' [ 0%] Building C object CMakeFiles/minc2_static.dir/libsrc2/convert.c.o /usr/bin/arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2=1 -D_XOPEN_SOURCE=500 -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -o CMakeFiles/minc2_static.dir/libsrc2/convert.c.o -c /<>/libsrc2/convert.c /<>/libsrc2/convert.c: In function 'miconvert_voxel_to_real': /<>/libsrc2/convert.c:107:39: warning: conversion to 'size_t' {aka 'unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] miget_slice_range(volume, coords, ncoords, &slice_max, &slice_min); ^~~~~~~ /<>/libsrc2/convert.c: In function 'miset_real_value': /<>/libsrc2/convert.c:256:45: warning: conversion to 'size_t' {aka 'unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] miconvert_real_to_voxel(volume, coords, ndims, value, &voxel); ^~~~~ /<>/libsrc2/convert.c: In function 'miget_volume_real_range': /<>/libsrc2/convert.c:528:23: warning: conversion to 'unsigned int' from 'int' may change the sign of the result [-Wsign-conversion] buffer = malloc(n * sizeof(double)); ^ /<>/libsrc2/convert.c:554:23: warning: conversion to 'unsigned int' from 'int' may change the sign of the result [-Wsign-conversion] buffer = malloc(n * sizeof(double)); ^ [ 1%] Building C object CMakeFiles/minc2_static.dir/libsrc2/datatype.c.o /usr/bin/arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2=1 -D_XOPEN_SOURCE=500 -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -o CMakeFiles/minc2_static.dir/libsrc2/datatype.c.o -c /<>/libsrc2/datatype.c [ 1%] Building C object CMakeFiles/minc2_static.dir/libsrc2/dimension.c.o /usr/bin/arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2=1 -D_XOPEN_SOURCE=500 -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -o CMakeFiles/minc2_static.dir/libsrc2/dimension.c.o -c /<>/libsrc2/dimension.c /<>/libsrc2/dimension.c: In function 'micopy_dimension': /<>/libsrc2/dimension.c:99:61: warning: conversion from 'misize_t' {aka 'long long unsigned int'} to 'size_t' {aka 'unsigned int'} may change value [-Wconversion] handle->offsets = ( double * ) malloc ( dim_ptr->length * sizeof ( double ) ); ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /<>/libsrc2/dimension.c:135:60: warning: conversion from 'misize_t' {aka 'long long unsigned int'} to 'size_t' {aka 'unsigned int'} may change value [-Wconversion] handle->widths = ( double * ) malloc ( dim_ptr->length * sizeof ( double ) ); ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /<>/libsrc2/dimension.c: In function 'micreate_dimension': /<>/libsrc2/dimension.c:288:51: warning: conversion from 'misize_t' {aka 'long long unsigned int'} to 'size_t' {aka 'unsigned int'} may change value [-Wconversion] handle->widths = ( double * ) malloc ( length * sizeof ( double ) ); ~~~~~~~^~~~~~~~~~~~~~~~~~~ /<>/libsrc2/dimension.c: In function 'miget_volume_dimensions': /<>/libsrc2/dimension.c:417:20: warning: conversion to 'hsize_t' {aka 'long long unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] number_of_dims = volume->number_of_dims; ^~~~~~ /<>/libsrc2/dimension.c:422:16: warning: conversion to 'hsize_t' {aka 'long long unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] max_dims = array_length; ^~~~~~~~~~~~ /<>/libsrc2/dimension.c: In function 'miset_apparent_dimension_order': /<>/libsrc2/dimension.c:486:69: warning: conversion to 'unsigned int' from 'int' may change the sign of the result [-Wsign-conversion] volume->dim_indices = ( int * ) malloc ( volume->number_of_dims * sizeof ( int ) ); ^ /<>/libsrc2/dimension.c: In function 'miset_apparent_dimension_order_by_name': /<>/libsrc2/dimension.c:580:69: warning: conversion to 'unsigned int' from 'int' may change the sign of the result [-Wsign-conversion] volume->dim_indices = ( int * ) malloc ( volume->number_of_dims * sizeof ( int ) ); ^ /<>/libsrc2/dimension.c: In function 'miget_dimension_offsets': /<>/libsrc2/dimension.c:1036:43: warning: conversion from 'misize_t' {aka 'long long unsigned int'} to 'double' may change value [-Wconversion] offsets[j] = dimension->start + ( i * dimension->step ); ^ /<>/libsrc2/dimension.c: In function 'miset_dimension_offsets': /<>/libsrc2/dimension.c:1083:47: warning: conversion from 'misize_t' {aka 'long long unsigned int'} to 'size_t' {aka 'unsigned int'} may change value [-Wconversion] ( double * ) malloc ( dimension->length * sizeof ( double ) ); ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /<>/libsrc2/dimension.c: In function 'miset_dimension_sampling_flag': /<>/libsrc2/dimension.c:1136:21: warning: unsigned conversion from 'int' to 'midimattr_t' {aka 'unsigned int'} changes value from '-2' to '4294967294' [-Wsign-conversion] dimension->attr &= ~MI_DIMATTR_REGULARLY_SAMPLED; ^~ /<>/libsrc2/dimension.c:1138:21: warning: unsigned conversion from 'int' to 'midimattr_t' {aka 'unsigned int'} changes value from '-3' to '4294967293' [-Wsign-conversion] dimension->attr &= ~MI_DIMATTR_NOT_REGULARLY_SAMPLED; ^~ /<>/libsrc2/dimension.c: In function 'miget_dimension_start': /<>/libsrc2/dimension.c:1356:57: warning: conversion from 'misize_t' {aka 'long long unsigned int'} to 'double' may change value [-Wconversion] *start_ptr = dimension->start + ( dimension->step * ( dimension->length - 1 ) ); ^ /<>/libsrc2/dimension.c:1362:61: warning: conversion from 'misize_t' {aka 'long long unsigned int'} to 'double' may change value [-Wconversion] *start_ptr = dimension->start + ( dimension->step * ( dimension->length - 1 ) ); ^ /<>/libsrc2/dimension.c:1369:63: warning: conversion from 'misize_t' {aka 'long long unsigned int'} to 'double' may change value [-Wconversion] *start_ptr = dimension->start + ( dimension->step * ( dimension->length - 1 ) ); ^ /<>/libsrc2/dimension.c: In function 'miset_dimension_widths': /<>/libsrc2/dimension.c:1651:65: warning: conversion from 'misize_t' {aka 'long long unsigned int'} to 'size_t' {aka 'unsigned int'} may change value [-Wconversion] dimension->widths = ( double * ) malloc ( dimension->length * sizeof ( double ) ); ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ [ 2%] Building C object CMakeFiles/minc2_static.dir/libsrc2/free.c.o /usr/bin/arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2=1 -D_XOPEN_SOURCE=500 -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -o CMakeFiles/minc2_static.dir/libsrc2/free.c.o -c /<>/libsrc2/free.c [ 2%] Building C object CMakeFiles/minc2_static.dir/libsrc2/grpattr.c.o /usr/bin/arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2=1 -D_XOPEN_SOURCE=500 -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -o CMakeFiles/minc2_static.dir/libsrc2/grpattr.c.o -c /<>/libsrc2/grpattr.c /<>/libsrc2/grpattr.c: In function 'full_path_for_attr': /<>/libsrc2/grpattr.c:41:24: warning: conversion to 'size_t' {aka 'unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] snprintf(fullpath, length, MI_ROOT_PATH "/image/%d", ^~~~~~ /<>/libsrc2/grpattr.c:48:46: warning: conversion to 'size_t' {aka 'unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] strncpy ( fullpath, MI_ROOT_PATH "/" , length ); ^~~~~~ /<>/libsrc2/grpattr.c:50:58: warning: conversion to 'size_t' {aka 'unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] strncpy ( fullpath, MI_ROOT_PATH "/" MI_INFO_NAME, length ); ^~~~~~ /<>/libsrc2/grpattr.c:55:35: warning: conversion to 'size_t' {aka 'unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] strncat(fullpath, "/", length - strlen(fullpath) - 1); ^ /<>/libsrc2/grpattr.c:58:35: warning: conversion to 'size_t' {aka 'unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] strncat(fullpath, path, length - strlen(fullpath) - 1); ^ /<>/libsrc2/grpattr.c: In function 'full_path_for_group': /<>/libsrc2/grpattr.c:64:52: warning: conversion to 'size_t' {aka 'unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] strncpy(fullpath, MI_ROOT_PATH "/" MI_INFO_NAME, length); ^~~~~~ /<>/libsrc2/grpattr.c:67:35: warning: conversion to 'size_t' {aka 'unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] strncat(fullpath, "/", length - strlen(fullpath) - 1); ^ /<>/libsrc2/grpattr.c:70:35: warning: conversion to 'size_t' {aka 'unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] strncat(fullpath, path, length - strlen(fullpath) - 1); ^ /<>/libsrc2/grpattr.c: In function 'milist_recursion': /<>/libsrc2/grpattr.c:124:22: warning: conversion to 'hsize_t' {aka 'long long unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] data->frame_ptr->grp_idx ); ~~~~~~~~~~~~~~~^~~~~~~~~ /<>/libsrc2/grpattr.c:157:58: warning: conversion to 'hsize_t' {aka 'long long unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] data->frame_ptr->grp_idx - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~ /<>/libsrc2/grpattr.c: In function 'milist_attr_op': /<>/libsrc2/grpattr.c:198:44: warning: conversion to 'size_t' {aka 'unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] strncpy ( data->name_ptr, attr_name, data->name_len ); ~~~~^~~~~~~~~~ /<>/libsrc2/grpattr.c: In function 'milist_attr_next': /<>/libsrc2/grpattr.c:223:49: warning: conversion to 'size_t' {aka 'unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] strncpy ( path, data->frame_ptr->relpath, maxpath ); ^~~~~~~ /<>/libsrc2/grpattr.c: In function 'milist_grp_next': /<>/libsrc2/grpattr.c:314:49: warning: conversion to 'size_t' {aka 'unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] strncpy ( path, data->frame_ptr->relpath, maxpath ); ^~~~~~~ /<>/libsrc2/grpattr.c:315:48: warning: conversion to 'size_t' {aka 'unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] strncpy ( data->frame_ptr->relpath, tmp, maxpath ); ^~~~~~~ /<>/libsrc2/grpattr.c: In function 'miget_attr_length': /<>/libsrc2/grpattr.c:551:15: warning: conversion from 'hsize_t' {aka 'long long unsigned int'} to 'size_t' {aka 'unsigned int'} may change value [-Wconversion] *length = hdf_dims[0]; ^~~~~~~~ /<>/libsrc2/grpattr.c: In function 'miset_attr_values': /<>/libsrc2/grpattr.c:906:31: warning: conversion to 'size_t' {aka 'unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] slength = strlen ( path ) - ( pch - path ); ^ /<>/libsrc2/grpattr.c:910:41: warning: conversion to 'size_t' {aka 'unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] std_name[i] = path[pch - path + 1 + i]; ^ [ 3%] Building C object CMakeFiles/minc2_static.dir/libsrc2/hyper.c.o /usr/bin/arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2=1 -D_XOPEN_SOURCE=500 -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -o CMakeFiles/minc2_static.dir/libsrc2/hyper.c.o -c /<>/libsrc2/hyper.c /<>/libsrc2/hyper.c: In function 'mirw_hyperslab_raw': /<>/libsrc2/hyper.c:256:21: warning: conversion from 'misize_t' {aka 'const long long unsigned int'} to 'size_t' {aka 'unsigned int'} may change value [-Wconversion] icount[i] = count[i]; ^~~~~ /<>/libsrc2/hyper.c:258:25: warning: conversion to 'size_t' {aka 'unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] restructure_array(ndims, buffer, icount, H5Tget_size(type_id), ^~~~~ /<>/libsrc2/hyper.c:276:42: warning: conversion from 'misize_t' {aka 'const long long unsigned int'} to 'size_t' {aka 'unsigned int'} may change value [-Wconversion] icount[volume->dim_indices[i]] = count[i]; ^~~~~ /<>/libsrc2/hyper.c:286:26: warning: conversion from 'misize_t' {aka 'long long unsigned int'} to 'size_t' {aka 'unsigned int'} may change value [-Wconversion] temp_buffer=malloc(buffer_size); ^~~~~~~~~~~ /<>/libsrc2/hyper.c:294:33: warning: conversion from 'misize_t' {aka 'long long unsigned int'} to 'size_t' {aka 'unsigned int'} may change value [-Wconversion] memcpy(temp_buffer,buffer,buffer_size); ^~~~~~~~~~~ /<>/libsrc2/hyper.c:296:25: warning: conversion to 'size_t' {aka 'unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] restructure_array(ndims, temp_buffer, icount, H5Tget_size(type_id), ^~~~~ /<>/libsrc2/hyper.c: In function 'mirw_hyperslab_icv': /<>/libsrc2/hyper.c:433:11: warning: conversion to 'hsize_t' {aka 'long long unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] ndims = volume->number_of_dims; ^~~~~~ /<>/libsrc2/hyper.c:445:32: warning: conversion from 'hsize_t' {aka 'long long unsigned int'} to 'int' may change value [-Wconversion] mspc_id = H5Screate_simple(ndims, hdf_count, NULL); ^~~~~ /<>/libsrc2/hyper.c:453:44: warning: conversion from 'hsize_t' {aka 'long long unsigned int'} to 'int' may change value [-Wconversion] miget_hyperslab_size_hdf(buffer_type_id, ndims, hdf_count, &buffer_size); ^~~~~ /<>/libsrc2/hyper.c:496:21: warning: conversion from 'hsize_t' {aka 'long long unsigned int'} to 'int' may change value [-Wconversion] slice_ndims = ndims; ^~~~~ /<>/libsrc2/hyper.c:507:14: warning: conversion to 'hsize_t' {aka 'long long unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] for (i = slice_ndims; i < ndims; i++ ) { ^~~~~~~~~~~ /<>/libsrc2/hyper.c:515:57: warning: conversion from 'hsize_t' {aka 'long long unsigned int'} to 'size_t' {aka 'unsigned int'} may change value [-Wconversion] image_slice_max_buffer=malloc(total_number_of_slices*sizeof(double)); ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/libsrc2/hyper.c:523:57: warning: conversion from 'hsize_t' {aka 'long long unsigned int'} to 'size_t' {aka 'unsigned int'} may change value [-Wconversion] image_slice_min_buffer=malloc(total_number_of_slices*sizeof(double)); ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/libsrc2/hyper.c:661:21: warning: conversion from 'misize_t' {aka 'const long long unsigned int'} to 'size_t' {aka 'unsigned int'} may change value [-Wconversion] icount[i] = count[i]; ^~~~~ /<>/libsrc2/hyper.c:663:25: warning: conversion from 'hsize_t' {aka 'long long unsigned int'} to 'size_t' {aka 'unsigned int'} may change value [-Wconversion] restructure_array(ndims, buffer, icount, H5Tget_size(buffer_type_id),volume->dim_indices, dir); ^~~~~ /<>/libsrc2/hyper.c:674:42: warning: conversion from 'misize_t' {aka 'const long long unsigned int'} to 'size_t' {aka 'unsigned int'} may change value [-Wconversion] icount[volume->dim_indices[i]] = count[i]; ^~~~~ /<>/libsrc2/hyper.c:677:40: warning: conversion from 'hsize_t' {aka 'long long unsigned int'} to 'int' may change value [-Wconversion] imap[volume->dim_indices[i]] = i; ^ /<>/libsrc2/hyper.c:684:26: warning: conversion from 'misize_t' {aka 'long long unsigned int'} to 'size_t' {aka 'unsigned int'} may change value [-Wconversion] temp_buffer=malloc(buffer_size); ^~~~~~~~~~~ /<>/libsrc2/hyper.c:691:33: warning: conversion from 'misize_t' {aka 'long long unsigned int'} to 'size_t' {aka 'unsigned int'} may change value [-Wconversion] memcpy(temp_buffer,buffer,buffer_size); ^~~~~~~~~~~ /<>/libsrc2/hyper.c:694:27: warning: conversion from 'hsize_t' {aka 'long long unsigned int'} to 'size_t' {aka 'unsigned int'} may change value [-Wconversion] restructure_array(ndims, temp_buffer, icount, H5Tget_size(buffer_type_id), imap, idir); ^~~~~ /<>/libsrc2/hyper.c: In function 'mirw_hyperslab_normalized': /<>/libsrc2/hyper.c:922:11: warning: conversion to 'hsize_t' {aka 'long long unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] ndims = volume->number_of_dims; ^~~~~~ In file included from /<>/libcommon/minc2_error.h:38, from /<>/libsrc2/minc2.h:11, from /<>/libsrc2/hyper.c:16: /<>/libsrc2/hyper.c:933:50: warning: conversion from 'hsize_t' {aka 'long long unsigned int'} to 'int' may change value [-Wconversion] MI_CHECK_HDF_CALL(mspc_id = H5Screate_simple(ndims, hdf_count, NULL),"H5Screate_simple"); ^~~~~ /<>/libcommon/minc_error.h:188:42: note: in definition of macro 'MI_CHECK_HDF_CALL' #define MI_CHECK_HDF_CALL(var,call) {if((var)<0) MI_LOG_ERROR(MI2_MSG_HDF5,call);} ^~~ /<>/libsrc2/hyper.c:940:43: warning: conversion from 'hsize_t' {aka 'long long unsigned int'} to 'int' may change value [-Wconversion] miget_hyperslab_size_hdf(volume_type_id,ndims,hdf_count,&buffer_size); ^~~~~ /<>/libsrc2/hyper.c:941:43: warning: conversion from 'hsize_t' {aka 'long long unsigned int'} to 'int' may change value [-Wconversion] miget_hyperslab_size_hdf(buffer_type_id,ndims,hdf_count,&input_buffer_size); ^~~~~ /<>/libsrc2/hyper.c:980:21: warning: conversion from 'hsize_t' {aka 'long long unsigned int'} to 'int' may change value [-Wconversion] slice_ndims = ndims; ^~~~~ /<>/libsrc2/hyper.c:991:14: warning: conversion to 'hsize_t' {aka 'long long unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] for (i = slice_ndims; i < ndims; i++ ) { ^~~~~~~~~~~ /<>/libsrc2/hyper.c:999:57: warning: conversion from 'hsize_t' {aka 'long long unsigned int'} to 'size_t' {aka 'unsigned int'} may change value [-Wconversion] image_slice_max_buffer=malloc(total_number_of_slices*sizeof(double)); ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/libsrc2/hyper.c:1000:57: warning: conversion from 'hsize_t' {aka 'long long unsigned int'} to 'size_t' {aka 'unsigned int'} may change value [-Wconversion] image_slice_min_buffer=malloc(total_number_of_slices*sizeof(double)); ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/libsrc2/hyper.c:1052:31: warning: conversion from 'misize_t' {aka 'long long unsigned int'} to 'size_t' {aka 'unsigned int'} may change value [-Wconversion] temp_buffer=(double*)malloc(buffer_size); ^~~~~~~~~~~ /<>/libsrc2/hyper.c:1103:22: warning: conversion from 'misize_t' {aka 'const long long unsigned int'} to 'size_t' {aka 'unsigned int'} may change value [-Wconversion] icount[i] = count[i]; ^~~~~ /<>/libsrc2/hyper.c:1105:25: warning: conversion from 'hsize_t' {aka 'long long unsigned int'} to 'size_t' {aka 'unsigned int'} may change value [-Wconversion] restructure_array(ndims, buffer, icount, H5Tget_size(buffer_type_id),volume->dim_indices, dir); ^~~~~ /<>/libsrc2/hyper.c:1116:42: warning: conversion from 'misize_t' {aka 'const long long unsigned int'} to 'size_t' {aka 'unsigned int'} may change value [-Wconversion] icount[volume->dim_indices[i]] = count[i]; ^~~~~ /<>/libsrc2/hyper.c:1119:40: warning: conversion from 'hsize_t' {aka 'long long unsigned int'} to 'int' may change value [-Wconversion] imap[volume->dim_indices[i]] = i; ^ /<>/libsrc2/hyper.c:1125:25: warning: conversion from 'misize_t' {aka 'long long unsigned int'} to 'size_t' {aka 'unsigned int'} may change value [-Wconversion] temp_buffer2=malloc(input_buffer_size); ^~~~~~~~~~~~~~~~~ /<>/libsrc2/hyper.c:1132:32: warning: conversion from 'misize_t' {aka 'long long unsigned int'} to 'size_t' {aka 'unsigned int'} may change value [-Wconversion] memcpy(temp_buffer2,buffer,input_buffer_size); ^~~~~~~~~~~~~~~~~ /<>/libsrc2/hyper.c:1135:25: warning: conversion from 'hsize_t' {aka 'long long unsigned int'} to 'size_t' {aka 'unsigned int'} may change value [-Wconversion] restructure_array(ndims, temp_buffer2, icount, H5Tget_size(buffer_type_id), imap, idir); ^~~~~ [ 3%] Building C object CMakeFiles/minc2_static.dir/libsrc2/label.c.o /usr/bin/arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2=1 -D_XOPEN_SOURCE=500 -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -o CMakeFiles/minc2_static.dir/libsrc2/label.c.o -c /<>/libsrc2/label.c /<>/libsrc2/label.c: In function 'miswap4': /<>/libsrc2/label.c:40:12: warning: conversion to 'int' from 'unsigned int' may change the sign of the result [-Wsign-conversion] return (tmp); ^ /<>/libsrc2/label.c: In function 'miget_label_value_by_index': /<>/libsrc2/label.c:199:51: warning: conversion to 'unsigned int' from 'int' may change the sign of the result [-Wsign-conversion] result = H5Tget_member_value(volume->mtype_id,idx,value); ^~~ [ 3%] Building C object CMakeFiles/minc2_static.dir/libsrc2/m2util.c.o /usr/bin/arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2=1 -D_XOPEN_SOURCE=500 -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -o CMakeFiles/minc2_static.dir/libsrc2/m2util.c.o -c /<>/libsrc2/m2util.c /<>/libsrc2/m2util.c: In function 'midownsample_slice': /<>/libsrc2/m2util.c:1491:18: warning: conversion to 'size_t' {aka 'unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] x1 = x; ^ /<>/libsrc2/m2util.c:1492:26: warning: conversion to 'hsize_t' {aka 'long long unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] y1 = y + ( j * scale ); ^ /<>/libsrc2/m2util.c:1492:20: warning: conversion to 'hsize_t' {aka 'long long unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] y1 = y + ( j * scale ); ^ /<>/libsrc2/m2util.c:1492:18: warning: conversion from 'hsize_t' {aka 'long long unsigned int'} to 'size_t' {aka 'unsigned int'} may change value [-Wconversion] y1 = y + ( j * scale ); ^ /<>/libsrc2/m2util.c:1493:26: warning: conversion to 'hsize_t' {aka 'long long unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] z1 = z + ( k * scale ); ^ /<>/libsrc2/m2util.c:1493:20: warning: conversion to 'hsize_t' {aka 'long long unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] z1 = z + ( k * scale ); ^ /<>/libsrc2/m2util.c:1493:18: warning: conversion from 'hsize_t' {aka 'long long unsigned int'} to 'size_t' {aka 'unsigned int'} may change value [-Wconversion] z1 = z + ( k * scale ); ^ /<>/libsrc2/m2util.c: In function 'miconvert_hyperslab_to_real': /<>/libsrc2/m2util.c:1602:46: warning: conversion to 'size_t' {aka 'unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] r = miget_slice_range ( volume, pos, volume->number_of_dims, ~~~~~~^~~~~~~~~~~~~~~~ /<>/libsrc2/m2util.c:1627:52: warning: conversion to 'size_t' {aka 'unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] r = miget_slice_range ( volume, pos, volume->number_of_dims, ~~~~~~^~~~~~~~~~~~~~~~ /<>/libsrc2/m2util.c: In function 'minc_update_thumbnail': /<>/libsrc2/m2util.c:1719:25: warning: conversion to 'hsize_t' {aka 'long long unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] osize[i] = isize[i] / scale; ^ /<>/libsrc2/m2util.c:1779:20: warning: conversion to 'hsize_t' {aka 'long long unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] in_bytes = scale * isize[1] * isize[2] * sizeof ( double ); ^ /<>/libsrc2/m2util.c:1779:14: warning: conversion from 'hsize_t' {aka 'long long unsigned int'} to 'size_t' {aka 'unsigned int'} may change value [-Wconversion] in_bytes = scale * isize[1] * isize[2] * sizeof ( double ); ^~~~~ /<>/libsrc2/m2util.c:1782:15: warning: conversion from 'hsize_t' {aka 'long long unsigned int'} to 'size_t' {aka 'unsigned int'} may change value [-Wconversion] out_bytes = osize[1] * osize[2] * sizeof ( double ); ^~~~~ /<>/libsrc2/m2util.c:1785:14: warning: conversion to 'hsize_t' {aka 'long long unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] count[0] = scale; ^~~~~ /<>/libsrc2/m2util.c:1800:22: warning: conversion to 'hsize_t' {aka 'long long unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] start[0] = slice * scale; ^ /<>/libsrc2/m2util.c:1803:16: warning: conversion to 'hsize_t' {aka 'long long unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] count[0] = scale; ^~~~~ /<>/libsrc2/m2util.c: In function 'alloc1d': /<>/libsrc2/m2util.c:1914:52: warning: conversion to 'unsigned int' from 'int' may change the sign of the result [-Wsign-conversion] return ( ( double * ) malloc ( sizeof ( double ) * n ) ); ^ /<>/libsrc2/m2util.c: In function 'alloc2d': /<>/libsrc2/m2util.c:1923:34: warning: conversion to 'unsigned int' from 'int' may change the sign of the result [-Wsign-conversion] mat = ( double ** ) malloc ( n * sizeof ( double * ) ); ^ /<>/libsrc2/m2util.c:1930:38: warning: conversion to 'unsigned int' from 'int' may change the sign of the result [-Wsign-conversion] mat[i] = ( double * ) malloc ( m * sizeof ( double ) ); ^ [ 4%] Building C object CMakeFiles/minc2_static.dir/libsrc2/record.c.o /usr/bin/arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2=1 -D_XOPEN_SOURCE=500 -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -o CMakeFiles/minc2_static.dir/libsrc2/record.c.o -c /<>/libsrc2/record.c /<>/libsrc2/record.c: In function 'miget_record_field_name': /<>/libsrc2/record.c:57:50: warning: conversion to 'unsigned int' from 'int' may change the sign of the result [-Wsign-conversion] *name = H5Tget_member_name(volume->ftype_id, index); ^~~~~ /<>/libsrc2/record.c: In function 'miset_record_field_name': /<>/libsrc2/record.c:91:20: warning: conversion to 'size_t' {aka 'unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] offset = index * H5Tget_size(ftype_id); ^ [ 4%] Building C object CMakeFiles/minc2_static.dir/libsrc2/slice.c.o /usr/bin/arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2=1 -D_XOPEN_SOURCE=500 -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -o CMakeFiles/minc2_static.dir/libsrc2/slice.c.o -c /<>/libsrc2/slice.c /<>/libsrc2/slice.c: In function 'mirw_slice_minmax': /<>/libsrc2/slice.c:72:11: warning: conversion to 'misize_t' {aka 'long long unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] ndims = H5Sget_simple_extent_ndims ( fspc_id ); ^~~~~~~~~~~~~~~~~~~~~~~~~~ [ 5%] Building C object CMakeFiles/minc2_static.dir/libsrc2/valid.c.o /usr/bin/arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2=1 -D_XOPEN_SOURCE=500 -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -o CMakeFiles/minc2_static.dir/libsrc2/valid.c.o -c /<>/libsrc2/valid.c [ 5%] Building C object CMakeFiles/minc2_static.dir/libsrc2/volprops.c.o /usr/bin/arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2=1 -D_XOPEN_SOURCE=500 -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -o CMakeFiles/minc2_static.dir/libsrc2/volprops.c.o -c /<>/libsrc2/volprops.c /<>/libsrc2/volprops.c: In function 'miget_volume_props': /<>/libsrc2/volprops.c:133:60: warning: conversion to 'unsigned int' from 'int' may change the sign of the result [-Wsign-conversion] handle->edge_lengths = (int *)malloc(handle->edge_count*sizeof(int)); ^ /<>/libsrc2/volprops.c:139:33: warning: conversion from 'hsize_t' {aka 'long long unsigned int'} to 'int' may change value [-Wconversion] handle->edge_lengths[i] = dims[i]; ^~~~ /<>/libsrc2/volprops.c:151:43: warning: conversion to 'unsigned int' from 'int' may change the sign of the result [-Wsign-conversion] fcode = H5Pget_filter1(hdf_plist, i, &flags, &cd_nelmts, ^ /<>/libsrc2/volprops.c:156:34: warning: conversion to 'int' from 'unsigned int' may change the sign of the result [-Wsign-conversion] handle->zlib_level = cd_values[0]; ^~~~~~~~~ /<>/libsrc2/volprops.c: In function 'miset_props_blocking': /<>/libsrc2/volprops.c:432:52: warning: conversion to 'unsigned int' from 'int' may change the sign of the result [-Wsign-conversion] props->edge_lengths = (int *) malloc(edge_count*sizeof(int)); ^ [ 6%] Building C object CMakeFiles/minc2_static.dir/libsrc2/volume.c.o /usr/bin/arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2=1 -D_XOPEN_SOURCE=500 -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -o CMakeFiles/minc2_static.dir/libsrc2/volume.c.o -c /<>/libsrc2/volume.c /<>/libsrc2/volume.c: In function '_hdf_open': /<>/libsrc2/volume.c:120:117: warning: conversion to 'size_t' {aka 'unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] H5Pset_cache(prp_id, 0, 2503, miget_cfg_present(MICFG_MINC_FILE_CACHE)?miget_cfg_int(MICFG_MINC_FILE_CACHE)*100000:_MI1_MAX_VAR_BUFFER_SIZE*10, 1.0); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/libsrc2/volume.c:132:24: warning: conversion to 'unsigned int' from 'int' may change the sign of the result [-Wsign-conversion] fd = H5Fopen(path, mode, prp_id); ^~~~ /<>/libsrc2/volume.c: In function '_hdf_create': /<>/libsrc2/volume.c:224:115: warning: conversion to 'size_t' {aka 'unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] H5Pset_cache(fpid, 0, 2503, miget_cfg_present(MICFG_MINC_FILE_CACHE)?miget_cfg_int(MICFG_MINC_FILE_CACHE)*100000:_MI1_MAX_VAR_BUFFER_SIZE*100, 1.0); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/libsrc2/volume.c:227:26: warning: conversion to 'unsigned int' from 'int' may change the sign of the result [-Wsign-conversion] fd = H5Fcreate(path, cmode, H5P_DEFAULT, fpid); ^~~~~ In file included from /usr/include/hdf5/serial/hdf5.h:34, from /<>/libsrc2/volume.c:8: /<>/libsrc2/volume.c: In function 'micreate_volume': /usr/include/hdf5/serial/H5Ppublic.h:44:31: warning: conversion to 'int' from 'unsigned int' may change the sign of the result [-Wsign-conversion] #define H5OPEN H5open(), /usr/include/hdf5/serial/H5Fpublic.h:52:32: note: in expansion of macro 'H5OPEN' #define H5F_ACC_TRUNC (H5CHECK H5OPEN 0x0002u) /*overwrite existing files */ ^~~~~~ /<>/libsrc2/volume.c:584:35: note: in expansion of macro 'H5F_ACC_TRUNC' file_id = _hdf_create(filename, H5F_ACC_TRUNC); ^~~~~~~~~~~~~ /<>/libsrc2/volume.c:634:23: warning: conversion to 'hsize_t' {aka 'long long unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] hdf_size[i] = create_props->edge_lengths[i]; ^~~~~~~~~~~~ In file included from /<>/libcommon/minc2_error.h:38, from /<>/libsrc2/minc2.h:11, from /<>/libsrc2/volume.c:32: /<>/libsrc2/volume.c:664:72: warning: conversion to 'unsigned int' from 'int' may change the sign of the result [-Wsign-conversion] MI_CHECK_HDF_CALL_RET(stat = H5Pset_deflate(hdf_plist, create_props->zlib_level),"H5Pset_deflate") ~~~~~~~~~~~~^~~~~~~~~~~~ /<>/libcommon/minc_error.h:189:46: note: in definition of macro 'MI_CHECK_HDF_CALL_RET' #define MI_CHECK_HDF_CALL_RET(var,call) {if((var)<0) return MI_LOG_ERROR(MI2_MSG_HDF5,call);} ^~~ /<>/libsrc2/volume.c:896:70: warning: conversion to 'unsigned int' from 'int' may change the sign of the result [-Wsign-conversion] handle->dim_handles = (midimhandle_t *)malloc(number_of_dimensions * ^ In file included from /<>/libcommon/minc2_error.h:38, from /<>/libsrc2/minc2.h:11, from /<>/libsrc2/volume.c:32: /<>/libsrc2/volume.c:900:63: warning: conversion to 'unsigned int' from 'int' may change the sign of the result [-Wsign-conversion] return MI_LOG_ERROR(MI2_MSG_OUTOFMEM,number_of_dimensions * sizeof(midimhandle_t)); ^ /<>/libcommon/minc_error.h:187:75: note: in definition of macro 'MI_LOG_ERROR' #define MI_LOG_ERROR(code,...) mi2log_message(__FILE__, __LINE__, code, ##__VA_ARGS__ ) ^~~~~~~~~~~ /<>/libsrc2/volume.c:988:73: warning: conversion to 'unsigned int' from 'int' may change the sign of the result [-Wsign-conversion] props_handle->edge_lengths = (int *)malloc(create_props->max_lengths*sizeof(int)); ^ /<>/libsrc2/volume.c: In function '_miget_irregular_spacing': /<>/libsrc2/volume.c:1171:35: warning: conversion from 'hssize_t' {aka 'long long int'} to 'size_t' {aka 'unsigned int'} may change value [-Wconversion] hdim->offsets = malloc(n_points * sizeof(double)); ~~~~~~~~~^~~~~~~~~~~~~~~~ /<>/libsrc2/volume.c:1195:34: warning: conversion from 'hssize_t' {aka 'long long int'} to 'size_t' {aka 'unsigned int'} may change value [-Wconversion] hdim->widths = malloc(n_points * sizeof(double)); ~~~~~~~~~^~~~~~~~~~~~~~~~ In file included from /usr/include/hdf5/serial/hdf5.h:27, from /<>/libsrc2/volume.c:8: /<>/libsrc2/volume.c: In function 'miopen_volume': /usr/include/hdf5/serial/H5Fpublic.h:50:24: warning: conversion to 'int' from 'unsigned int' may change the sign of the result [-Wsign-conversion] #define H5F_ACC_RDONLY (H5CHECK H5OPEN 0x0000u) /*absence of rdwr => rd-only */ ^ /<>/libsrc2/volume.c:1347:16: note: in expansion of macro 'H5F_ACC_RDONLY' hdf_mode = H5F_ACC_RDONLY; ^~~~~~~~~~~~~~ /usr/include/hdf5/serial/H5Fpublic.h:51:22: warning: conversion to 'int' from 'unsigned int' may change the sign of the result [-Wsign-conversion] #define H5F_ACC_RDWR (H5CHECK H5OPEN 0x0001u) /*open for read and write */ ^ /<>/libsrc2/volume.c:1349:16: note: in expansion of macro 'H5F_ACC_RDWR' hdf_mode = H5F_ACC_RDWR; ^~~~~~~~~~~~ /<>/libsrc2/volume.c:1421:62: warning: conversion to 'unsigned int' from 'int' may change the sign of the result [-Wsign-conversion] handle->dim_handles = (midimhandle_t *)malloc(n_dimensions * ^ In file included from /<>/libcommon/minc2_error.h:38, from /<>/libsrc2/minc2.h:11, from /<>/libsrc2/volume.c:32: /<>/libsrc2/volume.c:1426:56: warning: conversion to 'unsigned int' from 'int' may change the sign of the result [-Wsign-conversion] return MI_LOG_ERROR(MI2_MSG_OUTOFMEM, n_dimensions * sizeof(midimhandle_t)); ^ /<>/libcommon/minc_error.h:187:75: note: in definition of macro 'MI_LOG_ERROR' #define MI_LOG_ERROR(code,...) mi2log_message(__FILE__, __LINE__, code, ##__VA_ARGS__ ) ^~~~~~~~~~~ /<>/libsrc2/volume.c:1509:59: warning: conversion to 'unsigned int' from 'int' may change the sign of the result [-Wsign-conversion] hid_t tmp_id = H5Tget_member_type(handle->ftype_id, i); ^ /<>/libsrc2/volume.c:1510:63: warning: conversion to 'unsigned int' from 'int' may change the sign of the result [-Wsign-conversion] size_t tmp_off = H5Tget_member_offset(handle->ftype_id, i); ^ /<>/libsrc2/volume.c:1511:59: warning: conversion to 'unsigned int' from 'int' may change the sign of the result [-Wsign-conversion] char *tmp_nm = H5Tget_member_name(handle->ftype_id, i); ^ /<>/libsrc2/volume.c: In function 'micreate_volume': /<>/libsrc2/volume.c:99:41: warning: '%s' directive output may be truncated writing up to 127 bytes into a region of size between 0 and 127 [-Wformat-truncation=] result = snprintf(id_str, length, "%s:%s:%s:%u:%u", ^~ /<>/libsrc2/volume.c:101:21: host_str, ~~~~~~~~ /<>/libsrc2/volume.c:99:37: note: using the range [0, 4294967295] for directive argument result = snprintf(id_str, length, "%s:%s:%s:%u:%u", ^~~~~~~~~~~~~~~~ /<>/libsrc2/volume.c:99:37: note: using the range [0, 4294967295] for directive argument In file included from /usr/arm-linux-gnueabi/include/stdio.h:873, from /usr/include/hdf5/serial/H5Epublic.h:20, from /usr/include/hdf5/serial/hdf5.h:26, from /<>/libsrc2/volume.c:8: /usr/arm-linux-gnueabi/include/bits/stdio2.h:67:10: note: '__builtin___snprintf_chk' output between 7 and 304 bytes into a destination of size 128 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 6%] Building C object CMakeFiles/minc2_static.dir/libcommon/minc2_error.c.o /usr/bin/arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2=1 -D_XOPEN_SOURCE=500 -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -o CMakeFiles/minc2_static.dir/libcommon/minc2_error.c.o -c /<>/libcommon/minc2_error.c [ 6%] Building C object CMakeFiles/minc2_static.dir/libcommon/minc_config.c.o /usr/bin/arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2=1 -D_XOPEN_SOURCE=500 -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -o CMakeFiles/minc2_static.dir/libcommon/minc_config.c.o -c /<>/libcommon/minc_config.c /<>/libcommon/minc_config.c: In function 'miread_cfg': /<>/libcommon/minc_config.c:84:42: warning: conversion to 'size_t' {aka 'unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] strncpy(buffer, tmp, maxlen); ^~~~~~ [ 7%] Building C object CMakeFiles/minc2_static.dir/libcommon/minc_error.c.o /usr/bin/arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2=1 -D_XOPEN_SOURCE=500 -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -o CMakeFiles/minc2_static.dir/libcommon/minc_error.c.o -c /<>/libcommon/minc_error.c [ 7%] Building C object CMakeFiles/minc2_static.dir/libcommon/ParseArgv.c.o /usr/bin/arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2=1 -D_XOPEN_SOURCE=500 -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -o CMakeFiles/minc2_static.dir/libcommon/ParseArgv.c.o -c /<>/libcommon/ParseArgv.c /<>/libcommon/ParseArgv.c: In function 'PrintUsage': /<>/libcommon/ParseArgv.c:439:32: warning: conversion to 'size_t' {aka 'unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] numSpaces = width + 1 - strlen(infoPtr->key); ^ /<>/libcommon/ParseArgv.c:439:22: warning: conversion to 'int' from 'size_t' {aka 'unsigned int'} may change the sign of the result [-Wsign-conversion] numSpaces = width + 1 - strlen(infoPtr->key); ^~~~~ [ 8%] Building C object CMakeFiles/minc2_static.dir/libcommon/read_file_names.c.o /usr/bin/arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2=1 -D_XOPEN_SOURCE=500 -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -o CMakeFiles/minc2_static.dir/libcommon/read_file_names.c.o -c /<>/libcommon/read_file_names.c /<>/libcommon/read_file_names.c: In function 'read_file_names': /<>/libcommon/read_file_names.c:53:34: warning: conversion to 'unsigned int' from 'int' may change the sign of the result [-Wsign-conversion] files = malloc(sizeof(*files) * array_size); ^ /<>/libcommon/read_file_names.c:76:48: warning: conversion to 'unsigned int' from 'int' may change the sign of the result [-Wsign-conversion] files = realloc(files, sizeof(*files) * array_size); ^ [ 8%] Building C object CMakeFiles/minc2_static.dir/libcommon/restructure.c.o /usr/bin/arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2=1 -D_XOPEN_SOURCE=500 -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -o CMakeFiles/minc2_static.dir/libcommon/restructure.c.o -c /<>/libcommon/restructure.c /<>/libcommon/restructure.c: In function 'restructure_array': /<>/libcommon/restructure.c:134:21: warning: unsigned conversion from 'int' to 'size_t' {aka 'unsigned int'} changes value from '-1' to '4294967295' [-Wsign-conversion] offset_next = -1; /* Initialize. */ ^ /<>/libcommon/restructure.c:64:40: warning: conversion from 'int' to 'unsigned char' may change value [-Wconversion] #define BIT_SET(bm, i) (bm[(i) / 8] |= (1 << ((i) % 8))) ^ /<>/libcommon/restructure.c:150:7: note: in expansion of macro 'BIT_SET' BIT_SET(bitmap, offset_start); ^~~~~~~ /<>/libcommon/restructure.c:64:40: warning: conversion from 'int' to 'unsigned char' may change value [-Wconversion] #define BIT_SET(bm, i) (bm[(i) / 8] |= (1 << ((i) % 8))) ^ /<>/libcommon/restructure.c:204:11: note: in expansion of macro 'BIT_SET' BIT_SET(bitmap, offset_next); ^~~~~~~ [ 9%] Building C object CMakeFiles/minc2_static.dir/libcommon/time_stamp.c.o /usr/bin/arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2=1 -D_XOPEN_SOURCE=500 -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -o CMakeFiles/minc2_static.dir/libcommon/time_stamp.c.o -c /<>/libcommon/time_stamp.c [ 9%] Building C object CMakeFiles/minc2_static.dir/libsrc/dim_conversion.c.o /usr/bin/arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2=1 -D_XOPEN_SOURCE=500 -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -o CMakeFiles/minc2_static.dir/libsrc/dim_conversion.c.o -c /<>/libsrc/dim_conversion.c In file included from /<>/libsrc/minc_private.h:84, from /<>/libsrc/dim_conversion.c:93: /<>/libsrc/dim_conversion.c: In function 'MI_icv_dimconvert': /<>/libsrc/minc_useful.h:115:20: warning: conversion from 'double' to 'unsigned char' may change value [-Wfloat-conversion] #define ROUND( x ) ((x) + ( ((x) >= 0) ? 0.5 : (-0.5) ) ) ^ /<>/libsrc/minc_basic.h:161:37: note: in expansion of macro 'ROUND' *((unsigned char *) ptr) = ROUND(dvalue); \ ^~~~~ /<>/libsrc/dim_conversion.c:726:11: note: in expansion of macro 'MI_FROM_DOUBLE' {MI_FROM_DOUBLE(dvalue, dcp->outtype, dcp->outsign, optr)} ^~~~~~~~~~~~~~ /<>/libsrc/minc_useful.h:115:20: warning: conversion from 'double' to 'signed char' may change value [-Wfloat-conversion] #define ROUND( x ) ((x) + ( ((x) >= 0) ? 0.5 : (-0.5) ) ) ^ /<>/libsrc/minc_basic.h:166:35: note: in expansion of macro 'ROUND' *((signed char *) ptr) = ROUND(dvalue); \ ^~~~~ /<>/libsrc/dim_conversion.c:726:11: note: in expansion of macro 'MI_FROM_DOUBLE' {MI_FROM_DOUBLE(dvalue, dcp->outtype, dcp->outsign, optr)} ^~~~~~~~~~~~~~ /<>/libsrc/minc_useful.h:115:20: warning: conversion from 'double' to 'short unsigned int' may change value [-Wfloat-conversion] #define ROUND( x ) ((x) + ( ((x) >= 0) ? 0.5 : (-0.5) ) ) ^ /<>/libsrc/minc_basic.h:175:38: note: in expansion of macro 'ROUND' *((unsigned short *) ptr) = ROUND(dvalue); \ ^~~~~ /<>/libsrc/dim_conversion.c:726:11: note: in expansion of macro 'MI_FROM_DOUBLE' {MI_FROM_DOUBLE(dvalue, dcp->outtype, dcp->outsign, optr)} ^~~~~~~~~~~~~~ /<>/libsrc/minc_useful.h:115:20: warning: conversion from 'double' to 'short int' may change value [-Wfloat-conversion] #define ROUND( x ) ((x) + ( ((x) >= 0) ? 0.5 : (-0.5) ) ) ^ /<>/libsrc/minc_basic.h:180:36: note: in expansion of macro 'ROUND' *((signed short *) ptr) = ROUND(dvalue); \ ^~~~~ /<>/libsrc/dim_conversion.c:726:11: note: in expansion of macro 'MI_FROM_DOUBLE' {MI_FROM_DOUBLE(dvalue, dcp->outtype, dcp->outsign, optr)} ^~~~~~~~~~~~~~ /<>/libsrc/minc_useful.h:115:20: warning: conversion from 'double' to 'unsigned int' may change value [-Wfloat-conversion] #define ROUND( x ) ((x) + ( ((x) >= 0) ? 0.5 : (-0.5) ) ) ^ /<>/libsrc/minc_basic.h:189:36: note: in expansion of macro 'ROUND' *((unsigned int *) ptr) = ROUND(dvalue); \ ^~~~~ /<>/libsrc/dim_conversion.c:726:11: note: in expansion of macro 'MI_FROM_DOUBLE' {MI_FROM_DOUBLE(dvalue, dcp->outtype, dcp->outsign, optr)} ^~~~~~~~~~~~~~ /<>/libsrc/minc_useful.h:115:20: warning: conversion from 'double' to 'int' may change value [-Wfloat-conversion] #define ROUND( x ) ((x) + ( ((x) >= 0) ? 0.5 : (-0.5) ) ) ^ /<>/libsrc/minc_basic.h:194:34: note: in expansion of macro 'ROUND' *((signed int *) ptr) = ROUND(dvalue); \ ^~~~~ /<>/libsrc/dim_conversion.c:726:11: note: in expansion of macro 'MI_FROM_DOUBLE' {MI_FROM_DOUBLE(dvalue, dcp->outtype, dcp->outsign, optr)} ^~~~~~~~~~~~~~ /<>/libsrc/minc_useful.h:123:23: warning: conversion from 'double' to 'float' may change value [-Wfloat-conversion] #define MIN( x, y ) ( ((x) <= (y)) ? (x) : (y) ) ^ /<>/libsrc/minc_basic.h:200:26: note: in expansion of macro 'MIN' *((float *) ptr) = MIN(FLT_MAX,dvalue); \ ^~~ /<>/libsrc/dim_conversion.c:726:11: note: in expansion of macro 'MI_FROM_DOUBLE' {MI_FROM_DOUBLE(dvalue, dcp->outtype, dcp->outsign, optr)} ^~~~~~~~~~~~~~ /<>/libsrc/minc_useful.h:115:20: warning: conversion from 'double' to 'unsigned char' may change value [-Wfloat-conversion] #define ROUND( x ) ((x) + ( ((x) >= 0) ? 0.5 : (-0.5) ) ) ^ /<>/libsrc/minc_basic.h:161:37: note: in expansion of macro 'ROUND' *((unsigned char *) ptr) = ROUND(dvalue); \ ^~~~~ /<>/libsrc/dim_conversion.c:734:17: note: in expansion of macro 'MI_FROM_DOUBLE' {MI_FROM_DOUBLE(dvalue, dcp->outtype, dcp->outsign, ptr)} ^~~~~~~~~~~~~~ /<>/libsrc/minc_useful.h:115:20: warning: conversion from 'double' to 'signed char' may change value [-Wfloat-conversion] #define ROUND( x ) ((x) + ( ((x) >= 0) ? 0.5 : (-0.5) ) ) ^ /<>/libsrc/minc_basic.h:166:35: note: in expansion of macro 'ROUND' *((signed char *) ptr) = ROUND(dvalue); \ ^~~~~ /<>/libsrc/dim_conversion.c:734:17: note: in expansion of macro 'MI_FROM_DOUBLE' {MI_FROM_DOUBLE(dvalue, dcp->outtype, dcp->outsign, ptr)} ^~~~~~~~~~~~~~ /<>/libsrc/minc_useful.h:115:20: warning: conversion from 'double' to 'short unsigned int' may change value [-Wfloat-conversion] #define ROUND( x ) ((x) + ( ((x) >= 0) ? 0.5 : (-0.5) ) ) ^ /<>/libsrc/minc_basic.h:175:38: note: in expansion of macro 'ROUND' *((unsigned short *) ptr) = ROUND(dvalue); \ ^~~~~ /<>/libsrc/dim_conversion.c:734:17: note: in expansion of macro 'MI_FROM_DOUBLE' {MI_FROM_DOUBLE(dvalue, dcp->outtype, dcp->outsign, ptr)} ^~~~~~~~~~~~~~ /<>/libsrc/minc_useful.h:115:20: warning: conversion from 'double' to 'short int' may change value [-Wfloat-conversion] #define ROUND( x ) ((x) + ( ((x) >= 0) ? 0.5 : (-0.5) ) ) ^ /<>/libsrc/minc_basic.h:180:36: note: in expansion of macro 'ROUND' *((signed short *) ptr) = ROUND(dvalue); \ ^~~~~ /<>/libsrc/dim_conversion.c:734:17: note: in expansion of macro 'MI_FROM_DOUBLE' {MI_FROM_DOUBLE(dvalue, dcp->outtype, dcp->outsign, ptr)} ^~~~~~~~~~~~~~ /<>/libsrc/minc_useful.h:115:20: warning: conversion from 'double' to 'unsigned int' may change value [-Wfloat-conversion] #define ROUND( x ) ((x) + ( ((x) >= 0) ? 0.5 : (-0.5) ) ) ^ /<>/libsrc/minc_basic.h:189:36: note: in expansion of macro 'ROUND' *((unsigned int *) ptr) = ROUND(dvalue); \ ^~~~~ /<>/libsrc/dim_conversion.c:734:17: note: in expansion of macro 'MI_FROM_DOUBLE' {MI_FROM_DOUBLE(dvalue, dcp->outtype, dcp->outsign, ptr)} ^~~~~~~~~~~~~~ /<>/libsrc/minc_useful.h:115:20: warning: conversion from 'double' to 'int' may change value [-Wfloat-conversion] #define ROUND( x ) ((x) + ( ((x) >= 0) ? 0.5 : (-0.5) ) ) ^ /<>/libsrc/minc_basic.h:194:34: note: in expansion of macro 'ROUND' *((signed int *) ptr) = ROUND(dvalue); \ ^~~~~ /<>/libsrc/dim_conversion.c:734:17: note: in expansion of macro 'MI_FROM_DOUBLE' {MI_FROM_DOUBLE(dvalue, dcp->outtype, dcp->outsign, ptr)} ^~~~~~~~~~~~~~ /<>/libsrc/minc_useful.h:123:23: warning: conversion from 'double' to 'float' may change value [-Wfloat-conversion] #define MIN( x, y ) ( ((x) <= (y)) ? (x) : (y) ) ^ /<>/libsrc/minc_basic.h:200:26: note: in expansion of macro 'MIN' *((float *) ptr) = MIN(FLT_MAX,dvalue); \ ^~~ /<>/libsrc/dim_conversion.c:734:17: note: in expansion of macro 'MI_FROM_DOUBLE' {MI_FROM_DOUBLE(dvalue, dcp->outtype, dcp->outsign, ptr)} ^~~~~~~~~~~~~~ [ 10%] Building C object CMakeFiles/minc2_static.dir/libsrc/image_conversion.c.o /usr/bin/arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2=1 -D_XOPEN_SOURCE=500 -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -o CMakeFiles/minc2_static.dir/libsrc/image_conversion.c.o -c /<>/libsrc/image_conversion.c /<>/libsrc/image_conversion.c: In function 'miicv_setdbl': /<>/libsrc/image_conversion.c:399:29: warning: conversion from 'double' to 'int' may change value [-Wfloat-conversion] icvp->user_do_range = value; ^~~~~ /<>/libsrc/image_conversion.c:408:28: warning: conversion from 'double' to 'int' may change value [-Wfloat-conversion] icvp->user_do_norm = value; ^~~~~ /<>/libsrc/image_conversion.c:411:30: warning: conversion from 'double' to 'int' may change value [-Wfloat-conversion] icvp->user_user_norm = value; ^~~~~ /<>/libsrc/image_conversion.c:420:33: warning: conversion from 'double' to 'int' may change value [-Wfloat-conversion] icvp->user_do_fillvalue = value; ^~~~~ /<>/libsrc/image_conversion.c:426:31: warning: conversion from 'double' to 'int' may change value [-Wfloat-conversion] icvp->user_do_dimconv = value; ^~~~~ /<>/libsrc/image_conversion.c:429:30: warning: conversion from 'double' to 'int' may change value [-Wfloat-conversion] icvp->user_do_scalar = value; ^~~~~ /<>/libsrc/image_conversion.c:432:14: warning: conversion from 'double' to 'int' may change value [-Wfloat-conversion] ival = value; ^~~~~ /<>/libsrc/image_conversion.c:437:14: warning: conversion from 'double' to 'int' may change value [-Wfloat-conversion] ival = value; ^~~~~ /<>/libsrc/image_conversion.c:442:14: warning: conversion from 'double' to 'int' may change value [-Wfloat-conversion] ival = value; ^~~~~ /<>/libsrc/image_conversion.c:447:14: warning: conversion from 'double' to 'int' may change value [-Wfloat-conversion] ival = value; ^~~~~ /<>/libsrc/image_conversion.c:455:32: warning: conversion from 'double' to 'long int' may change value [-Wfloat-conversion] icvp->user_dim_size[0] = value; ^~~~~ /<>/libsrc/image_conversion.c:458:32: warning: conversion from 'double' to 'long int' may change value [-Wfloat-conversion] icvp->user_dim_size[1] = value; ^~~~~ /<>/libsrc/image_conversion.c:461:32: warning: conversion from 'double' to 'int' may change value [-Wfloat-conversion] icvp->user_keep_aspect = value; ^~~~~ /<>/libsrc/image_conversion.c:475:38: warning: conversion from 'double' to 'long int' may change value [-Wfloat-conversion] icvp->user_dim_size[idim] = value; ^~~~~ /<>/libsrc/image_conversion.c: In function 'miicv_inqint': /<>/libsrc/image_conversion.c:774:13: warning: conversion from 'double' to 'int' may change value [-Wfloat-conversion] *value = dvalue; ^~~~~~ /<>/libsrc/image_conversion.c: In function 'miicv_inqlong': /<>/libsrc/image_conversion.c:803:13: warning: conversion from 'double' to 'long int' may change value [-Wfloat-conversion] *value = dvalue; ^~~~~~ In file included from /<>/libsrc/minc_private.h:84, from /<>/libsrc/image_conversion.c:173: /<>/libsrc/image_conversion.c: In function 'MI_icv_zero_buffer': /<>/libsrc/minc_useful.h:115:20: warning: conversion from 'double' to 'unsigned char' may change value [-Wfloat-conversion] #define ROUND( x ) ((x) + ( ((x) >= 0) ? 0.5 : (-0.5) ) ) ^ /<>/libsrc/minc_basic.h:161:37: note: in expansion of macro 'ROUND' *((unsigned char *) ptr) = ROUND(dvalue); \ ^~~~~ /<>/libsrc/image_conversion.c:1490:5: note: in expansion of macro 'MI_FROM_DOUBLE' {MI_FROM_DOUBLE(zeroval, icvp->user_type, icvp->user_sign, zerostart)} ^~~~~~~~~~~~~~ /<>/libsrc/minc_useful.h:115:20: warning: conversion from 'double' to 'signed char' may change value [-Wfloat-conversion] #define ROUND( x ) ((x) + ( ((x) >= 0) ? 0.5 : (-0.5) ) ) ^ /<>/libsrc/minc_basic.h:166:35: note: in expansion of macro 'ROUND' *((signed char *) ptr) = ROUND(dvalue); \ ^~~~~ /<>/libsrc/image_conversion.c:1490:5: note: in expansion of macro 'MI_FROM_DOUBLE' {MI_FROM_DOUBLE(zeroval, icvp->user_type, icvp->user_sign, zerostart)} ^~~~~~~~~~~~~~ /<>/libsrc/minc_useful.h:115:20: warning: conversion from 'double' to 'short unsigned int' may change value [-Wfloat-conversion] #define ROUND( x ) ((x) + ( ((x) >= 0) ? 0.5 : (-0.5) ) ) ^ /<>/libsrc/minc_basic.h:175:38: note: in expansion of macro 'ROUND' *((unsigned short *) ptr) = ROUND(dvalue); \ ^~~~~ /<>/libsrc/image_conversion.c:1490:5: note: in expansion of macro 'MI_FROM_DOUBLE' {MI_FROM_DOUBLE(zeroval, icvp->user_type, icvp->user_sign, zerostart)} ^~~~~~~~~~~~~~ /<>/libsrc/minc_useful.h:115:20: warning: conversion from 'double' to 'short int' may change value [-Wfloat-conversion] #define ROUND( x ) ((x) + ( ((x) >= 0) ? 0.5 : (-0.5) ) ) ^ /<>/libsrc/minc_basic.h:180:36: note: in expansion of macro 'ROUND' *((signed short *) ptr) = ROUND(dvalue); \ ^~~~~ /<>/libsrc/image_conversion.c:1490:5: note: in expansion of macro 'MI_FROM_DOUBLE' {MI_FROM_DOUBLE(zeroval, icvp->user_type, icvp->user_sign, zerostart)} ^~~~~~~~~~~~~~ /<>/libsrc/minc_useful.h:115:20: warning: conversion from 'double' to 'unsigned int' may change value [-Wfloat-conversion] #define ROUND( x ) ((x) + ( ((x) >= 0) ? 0.5 : (-0.5) ) ) ^ /<>/libsrc/minc_basic.h:189:36: note: in expansion of macro 'ROUND' *((unsigned int *) ptr) = ROUND(dvalue); \ ^~~~~ /<>/libsrc/image_conversion.c:1490:5: note: in expansion of macro 'MI_FROM_DOUBLE' {MI_FROM_DOUBLE(zeroval, icvp->user_type, icvp->user_sign, zerostart)} ^~~~~~~~~~~~~~ /<>/libsrc/minc_useful.h:115:20: warning: conversion from 'double' to 'int' may change value [-Wfloat-conversion] #define ROUND( x ) ((x) + ( ((x) >= 0) ? 0.5 : (-0.5) ) ) ^ /<>/libsrc/minc_basic.h:194:34: note: in expansion of macro 'ROUND' *((signed int *) ptr) = ROUND(dvalue); \ ^~~~~ /<>/libsrc/image_conversion.c:1490:5: note: in expansion of macro 'MI_FROM_DOUBLE' {MI_FROM_DOUBLE(zeroval, icvp->user_type, icvp->user_sign, zerostart)} ^~~~~~~~~~~~~~ /<>/libsrc/minc_useful.h:123:23: warning: conversion from 'double' to 'float' may change value [-Wfloat-conversion] #define MIN( x, y ) ( ((x) <= (y)) ? (x) : (y) ) ^ /<>/libsrc/minc_basic.h:200:26: note: in expansion of macro 'MIN' *((float *) ptr) = MIN(FLT_MAX,dvalue); \ ^~~ /<>/libsrc/image_conversion.c:1490:5: note: in expansion of macro 'MI_FROM_DOUBLE' {MI_FROM_DOUBLE(zeroval, icvp->user_type, icvp->user_sign, zerostart)} ^~~~~~~~~~~~~~ [ 10%] Building C object CMakeFiles/minc2_static.dir/libsrc/minc_convenience.c.o /usr/bin/arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2=1 -D_XOPEN_SOURCE=500 -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -o CMakeFiles/minc2_static.dir/libsrc/minc_convenience.c.o -c /<>/libsrc/minc_convenience.c /<>/libsrc/minc_convenience.c: In function 'miset_valid_range': /<>/libsrc/minc_convenience.c:430:17: warning: conversion from 'double' to 'float' may change value [-Wfloat-conversion] fval[0] = valid_range[0]; ^~~~~~~~~~~ /<>/libsrc/minc_convenience.c:431:17: warning: conversion from 'double' to 'float' may change value [-Wfloat-conversion] fval[1] = valid_range[1]; ^~~~~~~~~~~ /<>/libsrc/minc_convenience.c: In function 'miattput_pointer': /<>/libsrc/minc_convenience.c:638:10: warning: conversion to 'int' from 'size_t' {aka 'unsigned int'} may change the sign of the result [-Wsign-conversion] index=strlen(strcpy(pointer_string,MI_VARATT_POINTER_PREFIX)); ^~~~~~ In file included from /<>/libsrc/minc_private.h:84, from /<>/libsrc/minc_convenience.c:152: /<>/libsrc/minc_convenience.c: In function 'miadd_child': /<>/libsrc/minc_convenience.c:743:56: warning: conversion to 'size_t' {aka 'unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] if ((child_list = MALLOC(child_list_size+MAX_NC_NAME+ ^ /<>/libsrc/minc_useful.h:138:39: note: in definition of macro 'MALLOC' ( (type *) malloc( (size_t) (n_items) * sizeof(type) ) ) ^~~~~~~ In file included from /<>/libsrc/minc_private.h:89, from /<>/libsrc/minc_convenience.c:152: /<>/libsrc/minc_convenience.c:746:49: warning: conversion to 'size_t' {aka 'unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] child_list_size+MAX_NC_NAME+strlen(MI_CHILD_SEPARATOR)); ^ /<>/libcommon/minc_error.h:187:75: note: in definition of macro 'MI_LOG_ERROR' #define MI_LOG_ERROR(code,...) mi2log_message(__FILE__, __LINE__, code, ##__VA_ARGS__ ) ^~~~~~~~~~~ /<>/libsrc/minc_convenience.c:765:23: warning: conversion to 'size_t' {aka 'unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] child_list_size += strlen(MI_CHILD_SEPARATOR); ^~ /<>/libsrc/minc_convenience.c:765:26: warning: conversion to 'int' from 'size_t' {aka 'unsigned int'} may change the sign of the result [-Wsign-conversion] child_list_size += strlen(MI_CHILD_SEPARATOR); ^~~~~~ /<>/libsrc/minc_convenience.c:780:23: warning: conversion to 'size_t' {aka 'unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] child_list_size -= strlen(MI_CHILD_SEPARATOR); ^~ /<>/libsrc/minc_convenience.c:780:26: warning: conversion to 'int' from 'size_t' {aka 'unsigned int'} may change the sign of the result [-Wsign-conversion] child_list_size -= strlen(MI_CHILD_SEPARATOR); ^~~~~~ /<>/libsrc/minc_convenience.c: In function 'miappend_history': /<>/libsrc/minc_convenience.c:1378:30: warning: conversion to 'size_t' {aka 'unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] att_val = malloc(att_len + strlen(tm_stamp) + 2); ^ [ 10%] Building C object CMakeFiles/minc2_static.dir/libsrc/nd_loop.c.o /usr/bin/arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2=1 -D_XOPEN_SOURCE=500 -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -o CMakeFiles/minc2_static.dir/libsrc/nd_loop.c.o -c /<>/libsrc/nd_loop.c [ 11%] Building C object CMakeFiles/minc2_static.dir/libsrc/netcdf_convenience.c.o /usr/bin/arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2=1 -D_XOPEN_SOURCE=500 -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -o CMakeFiles/minc2_static.dir/libsrc/netcdf_convenience.c.o -c /<>/libsrc/netcdf_convenience.c In file included from /<>/libsrc/minc_private.h:84, from /<>/libsrc/netcdf_convenience.c:182: /<>/libsrc/netcdf_convenience.c: In function 'miexpand_file': /<>/libsrc/netcdf_convenience.c:380:38: warning: conversion to 'size_t' {aka 'unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] compfile = MALLOC(strlen(path) + max_compression_code_length + 2, char); ^ /<>/libsrc/minc_useful.h:138:39: note: in definition of macro 'MALLOC' ( (type *) malloc( (size_t) (n_items) * sizeof(type) ) ) ^~~~~~~ In file included from /usr/include/hdf5/serial/hdf5.h:27, from /<>/libsrc/minc.h:170, from /<>/libsrc/minc_private.h:83, from /<>/libsrc/netcdf_convenience.c:182: /<>/libsrc/netcdf_convenience.c: In function 'miopen': /usr/include/hdf5/serial/H5Fpublic.h:51:22: warning: conversion to 'int' from 'unsigned int' may change the sign of the result [-Wsign-conversion] #define H5F_ACC_RDWR (H5CHECK H5OPEN 0x0001u) /*open for read and write */ ^ /<>/libsrc/netcdf_convenience.c:517:14: note: in expansion of macro 'H5F_ACC_RDWR' hmode = H5F_ACC_RDWR; ^~~~~~~~~~~~ /usr/include/hdf5/serial/H5Fpublic.h:50:24: warning: conversion to 'int' from 'unsigned int' may change the sign of the result [-Wsign-conversion] #define H5F_ACC_RDONLY (H5CHECK H5OPEN 0x0000u) /*absence of rdwr => rd-only */ ^ /<>/libsrc/netcdf_convenience.c:520:14: note: in expansion of macro 'H5F_ACC_RDONLY' hmode = H5F_ACC_RDONLY; ^~~~~~~~~~~~~~ /<>/libsrc/netcdf_convenience.c: In function 'miattputstr': /<>/libsrc/netcdf_convenience.c:1033:38: warning: conversion to 'int' from 'size_t' {aka 'unsigned int'} may change the sign of the result [-Wsign-conversion] strlen(value) + 1, value); ~~~~~~~~~~~~~~^~~ [ 11%] Building C object CMakeFiles/minc2_static.dir/libsrc/value_conversion.c.o /usr/bin/arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2=1 -D_XOPEN_SOURCE=500 -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -o CMakeFiles/minc2_static.dir/libsrc/value_conversion.c.o -c /<>/libsrc/value_conversion.c /<>/libsrc/value_conversion.c: In function 'MI_convert_type': /<>/libsrc/value_conversion.c:622:49: warning: conversion to 'unsigned int' from 'int' may change the sign of the result [-Wsign-conversion] (size_t) number_of_values*inincr); ^ In file included from /<>/libsrc/minc_private.h:84, from /<>/libsrc/value_conversion.c:98: /<>/libsrc/minc_useful.h:115:20: warning: conversion from 'double' to 'unsigned char' may change value [-Wfloat-conversion] #define ROUND( x ) ((x) + ( ((x) >= 0) ? 0.5 : (-0.5) ) ) ^ /<>/libsrc/minc_basic.h:161:37: note: in expansion of macro 'ROUND' *((unsigned char *) ptr) = ROUND(dvalue); \ ^~~~~ /<>/libsrc/value_conversion.c:645:11: note: in expansion of macro 'MI_FROM_DOUBLE' {MI_FROM_DOUBLE(dvalue, outtype, outsgn, outptr)} ^~~~~~~~~~~~~~ /<>/libsrc/minc_useful.h:115:20: warning: conversion from 'double' to 'signed char' may change value [-Wfloat-conversion] #define ROUND( x ) ((x) + ( ((x) >= 0) ? 0.5 : (-0.5) ) ) ^ /<>/libsrc/minc_basic.h:166:35: note: in expansion of macro 'ROUND' *((signed char *) ptr) = ROUND(dvalue); \ ^~~~~ /<>/libsrc/value_conversion.c:645:11: note: in expansion of macro 'MI_FROM_DOUBLE' {MI_FROM_DOUBLE(dvalue, outtype, outsgn, outptr)} ^~~~~~~~~~~~~~ /<>/libsrc/minc_useful.h:115:20: warning: conversion from 'double' to 'short unsigned int' may change value [-Wfloat-conversion] #define ROUND( x ) ((x) + ( ((x) >= 0) ? 0.5 : (-0.5) ) ) ^ /<>/libsrc/minc_basic.h:175:38: note: in expansion of macro 'ROUND' *((unsigned short *) ptr) = ROUND(dvalue); \ ^~~~~ /<>/libsrc/value_conversion.c:645:11: note: in expansion of macro 'MI_FROM_DOUBLE' {MI_FROM_DOUBLE(dvalue, outtype, outsgn, outptr)} ^~~~~~~~~~~~~~ /<>/libsrc/minc_useful.h:115:20: warning: conversion from 'double' to 'short int' may change value [-Wfloat-conversion] #define ROUND( x ) ((x) + ( ((x) >= 0) ? 0.5 : (-0.5) ) ) ^ /<>/libsrc/minc_basic.h:180:36: note: in expansion of macro 'ROUND' *((signed short *) ptr) = ROUND(dvalue); \ ^~~~~ /<>/libsrc/value_conversion.c:645:11: note: in expansion of macro 'MI_FROM_DOUBLE' {MI_FROM_DOUBLE(dvalue, outtype, outsgn, outptr)} ^~~~~~~~~~~~~~ /<>/libsrc/minc_useful.h:115:20: warning: conversion from 'double' to 'unsigned int' may change value [-Wfloat-conversion] #define ROUND( x ) ((x) + ( ((x) >= 0) ? 0.5 : (-0.5) ) ) ^ /<>/libsrc/minc_basic.h:189:36: note: in expansion of macro 'ROUND' *((unsigned int *) ptr) = ROUND(dvalue); \ ^~~~~ /<>/libsrc/value_conversion.c:645:11: note: in expansion of macro 'MI_FROM_DOUBLE' {MI_FROM_DOUBLE(dvalue, outtype, outsgn, outptr)} ^~~~~~~~~~~~~~ /<>/libsrc/minc_useful.h:115:20: warning: conversion from 'double' to 'int' may change value [-Wfloat-conversion] #define ROUND( x ) ((x) + ( ((x) >= 0) ? 0.5 : (-0.5) ) ) ^ /<>/libsrc/minc_basic.h:194:34: note: in expansion of macro 'ROUND' *((signed int *) ptr) = ROUND(dvalue); \ ^~~~~ /<>/libsrc/value_conversion.c:645:11: note: in expansion of macro 'MI_FROM_DOUBLE' {MI_FROM_DOUBLE(dvalue, outtype, outsgn, outptr)} ^~~~~~~~~~~~~~ /<>/libsrc/minc_useful.h:123:23: warning: conversion from 'double' to 'float' may change value [-Wfloat-conversion] #define MIN( x, y ) ( ((x) <= (y)) ? (x) : (y) ) ^ /<>/libsrc/minc_basic.h:200:26: note: in expansion of macro 'MIN' *((float *) ptr) = MIN(FLT_MAX,dvalue); \ ^~~ /<>/libsrc/value_conversion.c:645:11: note: in expansion of macro 'MI_FROM_DOUBLE' {MI_FROM_DOUBLE(dvalue, outtype, outsgn, outptr)} ^~~~~~~~~~~~~~ [ 12%] Building C object CMakeFiles/minc2_static.dir/libsrc/voxel_loop.c.o /usr/bin/arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2=1 -D_XOPEN_SOURCE=500 -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -o CMakeFiles/minc2_static.dir/libsrc/voxel_loop.c.o -c /<>/libsrc/voxel_loop.c /<>/libsrc/voxel_loop.c: In function 'update_history': /<>/libsrc/voxel_loop.c:1182:15: warning: conversion to 'size_t' {aka 'unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] att_length += strlen(arg_string) + 1; ^~ /<>/libsrc/voxel_loop.c:1182:18: warning: conversion to 'int' from 'size_t' {aka 'unsigned int'} may change the sign of the result [-Wsign-conversion] att_length += strlen(arg_string) + 1; ^~~~~~ [ 12%] Building C object CMakeFiles/minc2_static.dir/libsrc/hdf_convenience.c.o /usr/bin/arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2=1 -D_XOPEN_SOURCE=500 -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -o CMakeFiles/minc2_static.dir/libsrc/hdf_convenience.c.o -c /<>/libsrc/hdf_convenience.c /<>/libsrc/hdf_convenience.c: In function 'hdf_var_add': /<>/libsrc/hdf_convenience.c:202:59: warning: conversion to 'unsigned int' from 'int' may change the sign of the result [-Wsign-conversion] new->dims = (hsize_t *) malloc(sizeof (hsize_t) * ndims); ^ In file included from /<>/libsrc/minc_private.h:89, from /<>/libsrc/hdf_convenience.c:8: /<>/libsrc/hdf_convenience.c:209:59: warning: conversion to 'unsigned int' from 'int' may change the sign of the result [-Wsign-conversion] MI_LOG_ERROR(MI_MSG_OUTOFMEM, sizeof(hsize_t) * ndims); ^ /<>/libcommon/minc_error.h:187:75: note: in definition of macro 'MI_LOG_ERROR' #define MI_LOG_ERROR(code,...) mi2log_message(__FILE__, __LINE__, code, ##__VA_ARGS__ ) ^~~~~~~~~~~ /<>/libsrc/hdf_convenience.c: In function 'hdf_size': /<>/libsrc/hdf_convenience.c:370:20: warning: conversion to 'int' from 'size_t' {aka 'unsigned int'} may change the sign of the result [-Wsign-conversion] int typ_size = H5Tget_size(typ_id); ^~~~~~~~~~~ /<>/libsrc/hdf_convenience.c:371:20: warning: conversion from 'hssize_t' {aka 'long long int'} to 'int' may change value [-Wconversion] int spc_size = H5Sget_simple_extent_npoints(spc_id); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/libsrc/hdf_convenience.c: In function 'hdf_attname': /<>/libsrc/hdf_convenience.c:455:38: warning: conversion to 'unsigned int' from 'int' may change the sign of the result [-Wsign-conversion] att_id = H5Aopen_idx(loc_id, attnum); ^~~~~~ /<>/libsrc/hdf_convenience.c: In function 'hdf_attinq': /<>/libsrc/hdf_convenience.c:578:25: warning: conversion to 'int' from 'size_t' {aka 'unsigned int'} may change the sign of the result [-Wsign-conversion] *length_ptr = typ_size; ^~~~~~~~ /<>/libsrc/hdf_convenience.c:581:25: warning: conversion from 'hssize_t' {aka 'long long int'} to 'int' may change value [-Wconversion] *length_ptr = H5Sget_simple_extent_npoints(spc_id); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/libsrc/hdf_convenience.c: In function 'hdf_get_dimorder': /<>/libsrc/hdf_convenience.c:667:14: warning: conversion to 'int' from 'size_t' {aka 'unsigned int'} may change the sign of the result [-Wsign-conversion] length = H5Tget_size(typ_id); ^~~~~~~~~~~ /<>/libsrc/hdf_convenience.c: In function 'hdf_dimdef': /<>/libsrc/hdf_convenience.c:958:49: warning: conversion to 'long unsigned int' from 'long int' may change the sign of the result [-Wsign-conversion] hdf_set_length(var->dset_id, dimnm, length); ^~~~~~ /<>/libsrc/hdf_convenience.c: In function 'hdf_attput': /<>/libsrc/hdf_convenience.c:1147:30: warning: conversion to 'size_t' {aka 'unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] H5Tset_size(ftyp_id, val_len); ^~~~~~~ /<>/libsrc/hdf_convenience.c:1185:33: warning: conversion to 'hsize_t' {aka 'long long unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] hsize_t temp_size = val_len; ^~~~~~~ /<>/libsrc/hdf_convenience.c: In function 'hdf_vardef': /<>/libsrc/hdf_convenience.c:1322:19: warning: conversion to 'hsize_t' {aka 'long long unsigned int'} from 'long int' may change the sign of the result [-Wsign-conversion] dims[i] = length; ^~~~~~ /<>/libsrc/hdf_convenience.c:1369:60: warning: conversion to 'hsize_t' {aka 'long long unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] if( MI_MAX_VAR_BUFFER_SIZE > dims[i] * val * unit_size ) { ^ In file included from /<>/libsrc/minc_private.h:84, from /<>/libsrc/hdf_convenience.c:8: /<>/libsrc/hdf_convenience.c:1373:81: warning: conversion to 'hsize_t' {aka 'long long unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] (hsize_t)( MI_MAX_VAR_BUFFER_SIZE / ( val * unit_size ) ) ); ^ /<>/libsrc/minc_useful.h:123:34: note: in definition of macro 'MIN' #define MIN( x, y ) ( ((x) <= (y)) ? (x) : (y) ) ^ /<>/libsrc/hdf_convenience.c:1373:81: warning: conversion to 'hsize_t' {aka 'long long unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] (hsize_t)( MI_MAX_VAR_BUFFER_SIZE / ( val * unit_size ) ) ); ^ /<>/libsrc/minc_useful.h:123:47: note: in definition of macro 'MIN' #define MIN( x, y ) ( ((x) <= (y)) ? (x) : (y) ) ^ /<>/libsrc/hdf_convenience.c:1381:38: warning: conversion to 'hsize_t' {aka 'long long unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] chkdims[i] = chunk_length; ^~~~~~~~~~~~ /<>/libsrc/hdf_convenience.c:1386:36: warning: conversion to 'unsigned int' from 'int' may change the sign of the result [-Wsign-conversion] H5Pset_deflate(prp_id, comp_level); ^~~~~~~~~~ /<>/libsrc/hdf_convenience.c:1418:42: warning: conversion to 'long unsigned int' from 'long int' may change the sign of the result [-Wsign-conversion] hdf_set_length(dst_id, varnm, dim->length); ~~~^~~~~~~~ /<>/libsrc/hdf_convenience.c: In function 'hdf_varget': /<>/libsrc/hdf_convenience.c:1534:19: warning: conversion to 'hsize_t' {aka 'long long unsigned int'} from 'long int' may change the sign of the result [-Wsign-conversion] fstart[i] = start_ptr[i]; ^~~~~~~~~ /<>/libsrc/hdf_convenience.c:1535:18: warning: conversion to 'hsize_t' {aka 'long long unsigned int'} from 'long int' may change the sign of the result [-Wsign-conversion] count[i] = length_ptr[i]; ^~~~~~~~~~ /<>/libsrc/hdf_convenience.c: In function 'hdf_varputg': /<>/libsrc/hdf_convenience.c:1633:45: warning: conversion to 'size_t' {aka 'unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] mystart = (hsize_t *)calloc(varp->ndims * 7, sizeof(hsize_t)); ~~~~~~~~~~~~^~~ /<>/libsrc/hdf_convenience.c:1649:18: warning: conversion to 'hsize_t' {aka 'long long unsigned int'} from 'long int' may change the sign of the result [-Wsign-conversion] mystart[idim] = start != NULL ? start[idim] : 0; ^~~~~ /<>/libsrc/hdf_convenience.c:1658:22: warning: conversion to 'hsize_t' {aka 'long long unsigned int'} from 'long int' may change the sign of the result [-Wsign-conversion] myedges[idim] = edges[idim]; ^~~~~ /<>/libsrc/hdf_convenience.c:1682:29: warning: conversion to 'hsize_t' {aka 'long long unsigned int'} from 'ptrdiff_t' {aka 'int'} may change the sign of the result [-Wsign-conversion] length[idim] = mymap[idim] * myedges[idim]; ^ /<>/libsrc/hdf_convenience.c:1683:45: warning: conversion to 'hsize_t' {aka 'long long unsigned int'} from 'ptrdiff_t' {aka 'int'} may change the sign of the result [-Wsign-conversion] stop[idim] = mystart[idim] + myedges[idim] * mystride[idim]; ^ /<>/libsrc/hdf_convenience.c:1740:16: warning: conversion to 'hsize_t' {aka 'long long unsigned int'} from 'ptrdiff_t' {aka 'int'} may change the sign of the result [-Wsign-conversion] mystart[idim] += mystride[idim]; ^~ /<>/libsrc/hdf_convenience.c:1742:22: warning: conversion to 'hsize_t' {aka 'long long unsigned int'} from 'long int' may change the sign of the result [-Wsign-conversion] mystart[idim] = start[idim]; ^~~~~ /<>/libsrc/hdf_convenience.c: In function 'hdf_vargetg': /<>/libsrc/hdf_convenience.c:1810:42: warning: conversion to 'size_t' {aka 'unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] mystart = (long *)calloc(varp->ndims * 7, sizeof(long)); ~~~~~~~~~~~~^~~ /<>/libsrc/hdf_convenience.c:1837:39: warning: conversion to 'hsize_t' {aka 'long long unsigned int'} from 'long int' may change the sign of the result [-Wsign-conversion] myedges[idim] = varp->dims[idim] - mystart[idim]; ^ /<>/libsrc/hdf_convenience.c:1837:22: warning: conversion from 'hsize_t' {aka 'long long unsigned int'} to 'long int' may change value [-Wconversion] myedges[idim] = varp->dims[idim] - mystart[idim]; ^~~~ /<>/libsrc/hdf_convenience.c: In function 'hdf_varput': /<>/libsrc/hdf_convenience.c:1957:19: warning: conversion to 'hsize_t' {aka 'long long unsigned int'} from 'long int' may change the sign of the result [-Wsign-conversion] fstart[i] = start_ptr[i]; ^~~~~~~~~ /<>/libsrc/hdf_convenience.c:1958:18: warning: conversion to 'hsize_t' {aka 'long long unsigned int'} from 'long int' may change the sign of the result [-Wsign-conversion] count[i] = length_ptr[i]; ^~~~~~~~~~ /<>/libsrc/hdf_convenience.c: In function 'hdf_varsize': /<>/libsrc/hdf_convenience.c:2069:23: warning: conversion from 'hsize_t' {aka 'long long unsigned int'} to 'long int' may change value [-Wconversion] size_ptr[i] = dims[i]; ^~~~ /<>/libsrc/hdf_convenience.c: In function 'hdf_copy_attr': /<>/libsrc/hdf_convenience.c:2103:26: warning: conversion to 'size_t' {aka 'unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] if ((val_ptr = malloc(hdf_size(spc_id, typ_id))) == NULL) ^~~~~~~~~~~~~~~~~~~~~~~~ /<>/libsrc/hdf_convenience.c: In function 'hdf_open': /<>/libsrc/hdf_convenience.c:2223:117: warning: conversion to 'size_t' {aka 'unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] H5Pset_cache(fpid, 0, 2503, miget_cfg_present(MICFG_MINC_FILE_CACHE)?miget_cfg_int(MICFG_MINC_FILE_CACHE)*100000:MI_MAX_VAR_BUFFER_SIZE*10, 1.0); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/libsrc/hdf_convenience.c:2239:33: warning: conversion to 'unsigned int' from 'int' may change the sign of the result [-Wsign-conversion] file_id = H5Fopen(path, mode, fpid); ^~~~ /<>/libsrc/hdf_convenience.c:2249:25: warning: conversion to 'unsigned int' from 'int' may change the sign of the result [-Wsign-conversion] file->wr_ok = (mode & H5F_ACC_RDWR) != 0; ^ /<>/libsrc/hdf_convenience.c:2271:37: warning: conversion to 'hsize_t' {aka 'long long unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] dims[ndims++] = H5Tget_nmembers(type_id); ^~~~~~~~~~~~~~~ /<>/libsrc/hdf_convenience.c: In function 'hdf_create': /<>/libsrc/hdf_convenience.c:2331:117: warning: conversion to 'size_t' {aka 'unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] H5Pset_cache(fpid, 0, 2503, miget_cfg_present(MICFG_MINC_FILE_CACHE)?miget_cfg_int(MICFG_MINC_FILE_CACHE)*100000:MI_MAX_VAR_BUFFER_SIZE*10, 1.0); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/hdf5/serial/hdf5.h:27, from /<>/libsrc/minc.h:170, from /<>/libsrc/minc_private.h:83, from /<>/libsrc/hdf_convenience.c:8: /usr/include/hdf5/serial/H5Fpublic.h:53:22: warning: conversion to 'int' from 'unsigned int' may change the sign of the result [-Wsign-conversion] #define H5F_ACC_EXCL (H5CHECK H5OPEN 0x0004u) /*fail if file already exists*/ ^ /<>/libsrc/hdf_convenience.c:2337:15: note: in expansion of macro 'H5F_ACC_EXCL' cmode = H5F_ACC_EXCL; ^~~~~~~~~~~~ /usr/include/hdf5/serial/H5Fpublic.h:52:23: warning: conversion to 'int' from 'unsigned int' may change the sign of the result [-Wsign-conversion] #define H5F_ACC_TRUNC (H5CHECK H5OPEN 0x0002u) /*overwrite existing files */ ^ /<>/libsrc/hdf_convenience.c:2340:15: note: in expansion of macro 'H5F_ACC_TRUNC' cmode = H5F_ACC_TRUNC; ^~~~~~~~~~~~~ /<>/libsrc/hdf_convenience.c:2347:35: warning: conversion to 'unsigned int' from 'int' may change the sign of the result [-Wsign-conversion] file_id = H5Fcreate(path, cmode, H5P_DEFAULT, fpid); ^~~~~ [ 13%] Building C object CMakeFiles/minc2_static.dir/libsrc/minc_compat.c.o /usr/bin/arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2=1 -D_XOPEN_SOURCE=500 -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -o CMakeFiles/minc2_static.dir/libsrc/minc_compat.c.o -c /<>/libsrc/minc_compat.c /<>/libsrc/minc_compat.c: In function 'MI2attcopy': /<>/libsrc/minc_compat.c:307:51: warning: conversion to 'size_t' {aka 'unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] val_ptr = malloc(MI2typelen(att_type) * att_length); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 13%] Building C object CMakeFiles/minc2_static.dir/libsrc/minc_simple.c.o /usr/bin/arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2=1 -D_XOPEN_SOURCE=500 -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -o CMakeFiles/minc2_static.dir/libsrc/minc_simple.c.o -c /<>/libsrc/minc_simple.c /<>/libsrc/minc_simple.c: In function 'minc_load_data': /<>/libsrc/minc_simple.c:393:27: warning: conversion to 'size_t' {aka 'unsigned int'} from 'long int' may change the sign of the result [-Wsign-conversion] ucount[j++] = dim_len[i]; ^~~~~~~ /<>/libsrc/minc_simple.c:397:23: warning: conversion to 'size_t' {aka 'unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] restructure_array(var_ndims, dataptr, ucount, nctypelen(nctype), ^~~~~~~~~ In file included from /<>/libsrc/minc.h:172, from /<>/libsrc/minc_private.h:83, from /<>/libsrc/minc_simple.c:38: /<>/libsrc/minc_compat.h:67:19: warning: conversion to 'size_t' {aka 'unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] #define nctypelen MI2typelen /<>/libsrc/minc_simple.c:397:51: note: in expansion of macro 'nctypelen' restructure_array(var_ndims, dataptr, ucount, nctypelen(nctype), ^~~~~~~~~ /<>/libsrc/minc_simple.c:416:77: warning: conversion to 'unsigned int' from 'int' may change the sign of the result [-Wsign-conversion] p_file->file_atts = (struct att_info *) malloc(sizeof (struct att_info) * ^ /<>/libsrc/minc_simple.c:419:77: warning: conversion to 'unsigned int' from 'int' may change the sign of the result [-Wsign-conversion] p_file->file_vars = (struct var_info *) malloc(sizeof (struct var_info) * ^ /<>/libsrc/minc_simple.c:431:48: warning: conversion to 'size_t' {aka 'unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] p_att->att_val = malloc(p_att->att_len * nctypelen(p_att->att_type)); ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/libsrc/minc_simple.c:446:51: warning: conversion to 'unsigned int' from 'int' may change the sign of the result [-Wsign-conversion] p_var->var_atts = malloc(p_var->var_natts * ^ /<>/libsrc/minc_simple.c:462:52: warning: conversion to 'size_t' {aka 'unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] p_att->att_val = malloc(p_att->att_len * nctypelen(p_att->att_type)); ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 14%] Building C object CMakeFiles/minc2_static.dir/libsrc/minc_format_convert.c.o /usr/bin/arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2=1 -D_XOPEN_SOURCE=500 -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -o CMakeFiles/minc2_static.dir/libsrc/minc_format_convert.c.o -c /<>/libsrc/minc_format_convert.c [ 14%] Building C object CMakeFiles/minc2_static.dir/volume_io/Geometry/colour.c.o /usr/bin/arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2=1 -D_XOPEN_SOURCE=500 -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -o CMakeFiles/minc2_static.dir/volume_io/Geometry/colour.c.o -c /<>/volume_io/Geometry/colour.c [ 14%] Building C object CMakeFiles/minc2_static.dir/volume_io/Geometry/colour_def.c.o /usr/bin/arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2=1 -D_XOPEN_SOURCE=500 -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -o CMakeFiles/minc2_static.dir/volume_io/Geometry/colour_def.c.o -c /<>/volume_io/Geometry/colour_def.c [ 15%] Building C object CMakeFiles/minc2_static.dir/volume_io/Geometry/gaussian.c.o /usr/bin/arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2=1 -D_XOPEN_SOURCE=500 -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -o CMakeFiles/minc2_static.dir/volume_io/Geometry/gaussian.c.o -c /<>/volume_io/Geometry/gaussian.c [ 15%] Building C object CMakeFiles/minc2_static.dir/volume_io/Geometry/inverse.c.o /usr/bin/arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2=1 -D_XOPEN_SOURCE=500 -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -o CMakeFiles/minc2_static.dir/volume_io/Geometry/inverse.c.o -c /<>/volume_io/Geometry/inverse.c [ 16%] Building C object CMakeFiles/minc2_static.dir/volume_io/Geometry/newton.c.o /usr/bin/arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2=1 -D_XOPEN_SOURCE=500 -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -o CMakeFiles/minc2_static.dir/volume_io/Geometry/newton.c.o -c /<>/volume_io/Geometry/newton.c [ 16%] Building C object CMakeFiles/minc2_static.dir/volume_io/Geometry/points.c.o /usr/bin/arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2=1 -D_XOPEN_SOURCE=500 -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -o CMakeFiles/minc2_static.dir/volume_io/Geometry/points.c.o -c /<>/volume_io/Geometry/points.c [ 17%] Building C object CMakeFiles/minc2_static.dir/volume_io/Geometry/splines.c.o /usr/bin/arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2=1 -D_XOPEN_SOURCE=500 -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -o CMakeFiles/minc2_static.dir/volume_io/Geometry/splines.c.o -c /<>/volume_io/Geometry/splines.c [ 17%] Building C object CMakeFiles/minc2_static.dir/volume_io/Geometry/tensors.c.o /usr/bin/arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2=1 -D_XOPEN_SOURCE=500 -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -o CMakeFiles/minc2_static.dir/volume_io/Geometry/tensors.c.o -c /<>/volume_io/Geometry/tensors.c [ 18%] Building C object CMakeFiles/minc2_static.dir/volume_io/Geometry/transforms.c.o /usr/bin/arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2=1 -D_XOPEN_SOURCE=500 -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -o CMakeFiles/minc2_static.dir/volume_io/Geometry/transforms.c.o -c /<>/volume_io/Geometry/transforms.c [ 18%] Building C object CMakeFiles/minc2_static.dir/volume_io/MNI_formats/gen_xf_io.c.o /usr/bin/arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2=1 -D_XOPEN_SOURCE=500 -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -o CMakeFiles/minc2_static.dir/volume_io/MNI_formats/gen_xf_io.c.o -c /<>/volume_io/MNI_formats/gen_xf_io.c /<>/volume_io/MNI_formats/gen_xf_io.c: In function 'output_one_transform': /<>/volume_io/MNI_formats/gen_xf_io.c:184:74: warning: conversion to 'size_t' {aka 'unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] volume_filename = alloc_string( string_length(prefix_filename) + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 100 ); ~~~ [ 18%] Building C object CMakeFiles/minc2_static.dir/volume_io/MNI_formats/gen_xfs.c.o /usr/bin/arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2=1 -D_XOPEN_SOURCE=500 -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -o CMakeFiles/minc2_static.dir/volume_io/MNI_formats/gen_xfs.c.o -c /<>/volume_io/MNI_formats/gen_xfs.c [ 19%] Building C object CMakeFiles/minc2_static.dir/volume_io/MNI_formats/grid_transforms.c.o /usr/bin/arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2=1 -D_XOPEN_SOURCE=500 -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -o CMakeFiles/minc2_static.dir/volume_io/MNI_formats/grid_transforms.c.o -c /<>/volume_io/MNI_formats/grid_transforms.c [ 19%] Building C object CMakeFiles/minc2_static.dir/volume_io/MNI_formats/mni_io.c.o /usr/bin/arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2=1 -D_XOPEN_SOURCE=500 -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -o CMakeFiles/minc2_static.dir/volume_io/MNI_formats/mni_io.c.o -c /<>/volume_io/MNI_formats/mni_io.c [ 20%] Building C object CMakeFiles/minc2_static.dir/volume_io/MNI_formats/tag_points.c.o /usr/bin/arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2=1 -D_XOPEN_SOURCE=500 -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -o CMakeFiles/minc2_static.dir/volume_io/MNI_formats/tag_points.c.o -c /<>/volume_io/MNI_formats/tag_points.c [ 20%] Building C object CMakeFiles/minc2_static.dir/volume_io/MNI_formats/thin_plate_spline.c.o /usr/bin/arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2=1 -D_XOPEN_SOURCE=500 -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -o CMakeFiles/minc2_static.dir/volume_io/MNI_formats/thin_plate_spline.c.o -c /<>/volume_io/MNI_formats/thin_plate_spline.c [ 21%] Building C object CMakeFiles/minc2_static.dir/volume_io/Prog_utils/alloc.c.o /usr/bin/arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2=1 -D_XOPEN_SOURCE=500 -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -o CMakeFiles/minc2_static.dir/volume_io/Prog_utils/alloc.c.o -c /<>/volume_io/Prog_utils/alloc.c /<>/volume_io/Prog_utils/alloc.c: In function 'alloc_memory_in_bytes': /<>/volume_io/Prog_utils/alloc.c:247:50: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'size_t' {aka 'unsigned int'} [-Wformat=] print_error( "Cannot alloc 1D array of %lu bytes.\n", n_bytes ); ~~^ ~~~~~~~ %u /<>/volume_io/Prog_utils/alloc.c: In function 'alloc_memory_1d': /<>/volume_io/Prog_utils/alloc.c:286:50: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'size_t' {aka 'unsigned int'} [-Wformat=] print_error( "Cannot alloc 1D array of %lu elements of %lu bytes.\n", ~~^ %u n_elements, type_size ); ~~~~~~~~~~ /<>/volume_io/Prog_utils/alloc.c:286:66: warning: format '%lu' expects argument of type 'long unsigned int', but argument 3 has type 'size_t' {aka 'unsigned int'} [-Wformat=] print_error( "Cannot alloc 1D array of %lu elements of %lu bytes.\n", ~~^ %u n_elements, type_size ); ~~~~~~~~~ /<>/volume_io/Prog_utils/alloc.c: In function 'alloc_memory_2d': /<>/volume_io/Prog_utils/alloc.c:329:50: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'size_t' {aka 'unsigned int'} [-Wformat=] print_error( "Cannot alloc 2D array of %lu by %lu elements of %lu bytes.\n", ~~^ %u n1, n2, type_size ); ~~ /<>/volume_io/Prog_utils/alloc.c:329:57: warning: format '%lu' expects argument of type 'long unsigned int', but argument 3 has type 'size_t' {aka 'unsigned int'} [-Wformat=] print_error( "Cannot alloc 2D array of %lu by %lu elements of %lu bytes.\n", ~~^ %u n1, n2, type_size ); ~~ /<>/volume_io/Prog_utils/alloc.c:329:73: warning: format '%lu' expects argument of type 'long unsigned int', but argument 4 has type 'size_t' {aka 'unsigned int'} [-Wformat=] print_error( "Cannot alloc 2D array of %lu by %lu elements of %lu bytes.\n", ~~^ %u n1, n2, type_size ); ~~~~~~~~~ /<>/volume_io/Prog_utils/alloc.c: In function 'alloc_memory_3d': /<>/volume_io/Prog_utils/alloc.c:377:50: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'size_t' {aka 'unsigned int'} [-Wformat=] print_error( "Cannot alloc 3D array of %lu by %lu by %lu elements of %lu bytes.\n", ~~^ %u n1, n2, n3, type_size ); ~~ /<>/volume_io/Prog_utils/alloc.c:377:57: warning: format '%lu' expects argument of type 'long unsigned int', but argument 3 has type 'size_t' {aka 'unsigned int'} [-Wformat=] print_error( "Cannot alloc 3D array of %lu by %lu by %lu elements of %lu bytes.\n", ~~^ %u n1, n2, n3, type_size ); ~~ /<>/volume_io/Prog_utils/alloc.c:377:64: warning: format '%lu' expects argument of type 'long unsigned int', but argument 4 has type 'size_t' {aka 'unsigned int'} [-Wformat=] print_error( "Cannot alloc 3D array of %lu by %lu by %lu elements of %lu bytes.\n", ~~^ %u n1, n2, n3, type_size ); ~~ /<>/volume_io/Prog_utils/alloc.c:377:80: warning: format '%lu' expects argument of type 'long unsigned int', but argument 5 has type 'size_t' {aka 'unsigned int'} [-Wformat=] print_error( "Cannot alloc 3D array of %lu by %lu by %lu elements of %lu bytes.\n", ~~^ %u n1, n2, n3, type_size ); ~~~~~~~~~ /<>/volume_io/Prog_utils/alloc.c: In function 'alloc_memory_4d': /<>/volume_io/Prog_utils/alloc.c:430:50: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'size_t' {aka 'unsigned int'} [-Wformat=] print_error( "Cannot alloc 4D array of %lu by %lu by %lu by %lu elements of %lu bytes.\n", ~~^ %u n1, n2, n3, n4, type_size ); ~~ /<>/volume_io/Prog_utils/alloc.c:430:57: warning: format '%lu' expects argument of type 'long unsigned int', but argument 3 has type 'size_t' {aka 'unsigned int'} [-Wformat=] print_error( "Cannot alloc 4D array of %lu by %lu by %lu by %lu elements of %lu bytes.\n", ~~^ %u n1, n2, n3, n4, type_size ); ~~ /<>/volume_io/Prog_utils/alloc.c:430:64: warning: format '%lu' expects argument of type 'long unsigned int', but argument 4 has type 'size_t' {aka 'unsigned int'} [-Wformat=] print_error( "Cannot alloc 4D array of %lu by %lu by %lu by %lu elements of %lu bytes.\n", ~~^ %u n1, n2, n3, n4, type_size ); ~~ /<>/volume_io/Prog_utils/alloc.c:430:71: warning: format '%lu' expects argument of type 'long unsigned int', but argument 5 has type 'size_t' {aka 'unsigned int'} [-Wformat=] print_error( "Cannot alloc 4D array of %lu by %lu by %lu by %lu elements of %lu bytes.\n", ~~^ %u n1, n2, n3, n4, type_size ); ~~ /<>/volume_io/Prog_utils/alloc.c:430:87: warning: format '%lu' expects argument of type 'long unsigned int', but argument 6 has type 'size_t' {aka 'unsigned int'} [-Wformat=] print_error( "Cannot alloc 4D array of %lu by %lu by %lu by %lu elements of %lu bytes.\n", ~~^ %u n1, n2, n3, n4, type_size ); ~~~~~~~~~ /<>/volume_io/Prog_utils/alloc.c: In function 'alloc_memory_5d': /<>/volume_io/Prog_utils/alloc.c:486:50: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'size_t' {aka 'unsigned int'} [-Wformat=] print_error( "Cannot alloc 4D array of %lu by %lu by %lu by %lu by %lu elements of %lu bytes.\n", ~~^ %u n1, n2, n3, n4, n5, type_size ); ~~ /<>/volume_io/Prog_utils/alloc.c:486:57: warning: format '%lu' expects argument of type 'long unsigned int', but argument 3 has type 'size_t' {aka 'unsigned int'} [-Wformat=] print_error( "Cannot alloc 4D array of %lu by %lu by %lu by %lu by %lu elements of %lu bytes.\n", ~~^ %u n1, n2, n3, n4, n5, type_size ); ~~ /<>/volume_io/Prog_utils/alloc.c:486:64: warning: format '%lu' expects argument of type 'long unsigned int', but argument 4 has type 'size_t' {aka 'unsigned int'} [-Wformat=] print_error( "Cannot alloc 4D array of %lu by %lu by %lu by %lu by %lu elements of %lu bytes.\n", ~~^ %u n1, n2, n3, n4, n5, type_size ); ~~ /<>/volume_io/Prog_utils/alloc.c:486:71: warning: format '%lu' expects argument of type 'long unsigned int', but argument 5 has type 'size_t' {aka 'unsigned int'} [-Wformat=] print_error( "Cannot alloc 4D array of %lu by %lu by %lu by %lu by %lu elements of %lu bytes.\n", ~~^ %u n1, n2, n3, n4, n5, type_size ); ~~ /<>/volume_io/Prog_utils/alloc.c:486:78: warning: format '%lu' expects argument of type 'long unsigned int', but argument 6 has type 'size_t' {aka 'unsigned int'} [-Wformat=] print_error( "Cannot alloc 4D array of %lu by %lu by %lu by %lu by %lu elements of %lu bytes.\n", ~~^ %u n1, n2, n3, n4, n5, type_size ); ~~ /<>/volume_io/Prog_utils/alloc.c:486:94: warning: format '%lu' expects argument of type 'long unsigned int', but argument 7 has type 'size_t' {aka 'unsigned int'} [-Wformat=] print_error( "Cannot alloc 4D array of %lu by %lu by %lu by %lu by %lu elements of %lu bytes.\n", ~~^ %u n1, n2, n3, n4, n5, type_size ); ~~~~~~~~~ /<>/volume_io/Prog_utils/alloc.c: In function 'realloc_memory': /<>/volume_io/Prog_utils/alloc.c:544:46: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'size_t' {aka 'unsigned int'} [-Wformat=] print_error( "Error reallocing %lu elements of size %lu.\n", ~~^ %u n_elements, type_size ); ~~~~~~~~~~ /<>/volume_io/Prog_utils/alloc.c:544:67: warning: format '%lu' expects argument of type 'long unsigned int', but argument 3 has type 'size_t' {aka 'unsigned int'} [-Wformat=] print_error( "Error reallocing %lu elements of size %lu.\n", ~~^ %u n_elements, type_size ); ~~~~~~~~~ /<>/volume_io/Prog_utils/alloc.c:558:76: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'size_t' {aka 'unsigned int'} [-Wformat=] print_error("Error: tried to realloc invalid number of elements, %lu.\n", ~~^ %u n_elements ); ~~~~~~~~~~ [ 21%] Building C object CMakeFiles/minc2_static.dir/volume_io/Prog_utils/alloc_check.c.o /usr/bin/arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2=1 -D_XOPEN_SOURCE=500 -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -o CMakeFiles/minc2_static.dir/volume_io/Prog_utils/alloc_check.c.o -c /<>/volume_io/Prog_utils/alloc_check.c [ 21%] Building C object CMakeFiles/minc2_static.dir/volume_io/Prog_utils/arrays.c.o /usr/bin/arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2=1 -D_XOPEN_SOURCE=500 -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -o CMakeFiles/minc2_static.dir/volume_io/Prog_utils/arrays.c.o -c /<>/volume_io/Prog_utils/arrays.c [ 22%] Building C object CMakeFiles/minc2_static.dir/volume_io/Prog_utils/files.c.o /usr/bin/arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2=1 -D_XOPEN_SOURCE=500 -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -o CMakeFiles/minc2_static.dir/volume_io/Prog_utils/files.c.o -c /<>/volume_io/Prog_utils/files.c /<>/volume_io/Prog_utils/files.c: In function 'extract_directory': /<>/volume_io/Prog_utils/files.c:1249:35: warning: conversion to 'size_t' {aka 'unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] directory = alloc_string( slash_index ); ^~~~~~~~~~~ /<>/volume_io/Prog_utils/files.c: In function 'input_binary_data': /<>/volume_io/Prog_utils/files.c:1746:58: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'size_t' {aka 'unsigned int'} [-Wformat=] print_error( " (%d out of %d items of size %ld). ", n_done, n, ~~^ %d element_size ); ~~~~~~~~~~~~ /<>/volume_io/Prog_utils/files.c: In function 'output_binary_data': /<>/volume_io/Prog_utils/files.c:1786:58: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'size_t' {aka 'unsigned int'} [-Wformat=] print_error( " (%d out of %d items of size %ld). ", n_done, n, ~~^ %d element_size ); ~~~~~~~~~~~~ /<>/volume_io/Prog_utils/files.c: In function 'io_quoted_string': /<>/volume_io/Prog_utils/files.c:2445:34: warning: conversion to 'size_t' {aka 'unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] *str = alloc_string( length ); ^~~~~~ [ 22%] Building C object CMakeFiles/minc2_static.dir/volume_io/Prog_utils/print.c.o /usr/bin/arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2=1 -D_XOPEN_SOURCE=500 -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -o CMakeFiles/minc2_static.dir/volume_io/Prog_utils/print.c.o -c /<>/volume_io/Prog_utils/print.c [ 23%] Building C object CMakeFiles/minc2_static.dir/volume_io/Prog_utils/progress.c.o /usr/bin/arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2=1 -D_XOPEN_SOURCE=500 -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -o CMakeFiles/minc2_static.dir/volume_io/Prog_utils/progress.c.o -c /<>/volume_io/Prog_utils/progress.c [ 23%] Building C object CMakeFiles/minc2_static.dir/volume_io/Prog_utils/string.c.o /usr/bin/arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2=1 -D_XOPEN_SOURCE=500 -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -o CMakeFiles/minc2_static.dir/volume_io/Prog_utils/string.c.o -c /<>/volume_io/Prog_utils/string.c /<>/volume_io/Prog_utils/string.c: In function 'create_string': /<>/volume_io/Prog_utils/string.c:40:25: warning: conversion to 'size_t' {aka 'unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] str = alloc_string( string_length(initial) ); ^~~~~~~~~~~~~~~~~~~~~~ /<>/volume_io/Prog_utils/string.c: In function 'strip_outer_blanks': /<>/volume_io/Prog_utils/string.c:235:63: warning: conversion to 'size_t' {aka 'unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] stripped = alloc_string( last_non_blank - first_non_blank + 1 ); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~ [ 24%] Building C object CMakeFiles/minc2_static.dir/volume_io/Prog_utils/time.c.o /usr/bin/arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2=1 -D_XOPEN_SOURCE=500 -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -o CMakeFiles/minc2_static.dir/volume_io/Prog_utils/time.c.o -c /<>/volume_io/Prog_utils/time.c [ 24%] Building C object CMakeFiles/minc2_static.dir/volume_io/Volumes/evaluate.c.o /usr/bin/arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2=1 -D_XOPEN_SOURCE=500 -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -o CMakeFiles/minc2_static.dir/volume_io/Volumes/evaluate.c.o -c /<>/volume_io/Volumes/evaluate.c /<>/volume_io/Volumes/evaluate.c: In function 'trilinear_interpolate_rgb': /<>/volume_io/Volumes/evaluate.c:257:24: warning: conversion from 'VIO_Real' {aka 'double'} to 'unsigned int' may change value [-Wfloat-conversion] coefs[c] = outside_value; ^~~~~~~~~~~~~ /<>/volume_io/Volumes/evaluate.c:305:20: warning: conversion from 'VIO_Real' {aka 'double'} to 'int' may change value [-Wfloat-conversion] out_rgb[i] = c0 + w * dw; ^~ [ 25%] Building C object CMakeFiles/minc2_static.dir/volume_io/Volumes/get_hyperslab.c.o /usr/bin/arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2=1 -D_XOPEN_SOURCE=500 -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -o CMakeFiles/minc2_static.dir/volume_io/Volumes/get_hyperslab.c.o -c /<>/volume_io/Volumes/get_hyperslab.c [ 25%] Building C object CMakeFiles/minc2_static.dir/volume_io/Volumes/input_free.c.o /usr/bin/arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2=1 -D_XOPEN_SOURCE=500 -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -o CMakeFiles/minc2_static.dir/volume_io/Volumes/input_free.c.o -c /<>/volume_io/Volumes/input_free.c [ 25%] Building C object CMakeFiles/minc2_static.dir/volume_io/Volumes/input_mnc.c.o /usr/bin/arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2=1 -D_XOPEN_SOURCE=500 -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -o CMakeFiles/minc2_static.dir/volume_io/Volumes/input_mnc.c.o -c /<>/volume_io/Volumes/input_mnc.c /<>/volume_io/Volumes/input_mnc.c: In function 'initialize_minc_input_from_minc_id': /<>/volume_io/Volumes/input_mnc.c:373:61: warning: conversion to 'long unsigned int' from 'long int' may change the sign of the result [-Wsign-conversion] irr_starts[d] = malloc(sizeof(VIO_Real) * file->sizes_in_file[d]); ^ /<>/volume_io/Volumes/input_mnc.c:374:61: warning: conversion to 'long unsigned int' from 'long int' may change the sign of the result [-Wsign-conversion] irr_widths[d] = malloc(sizeof(VIO_Real) * file->sizes_in_file[d]); ^ [ 26%] Building C object CMakeFiles/minc2_static.dir/volume_io/Volumes/input_volume.c.o /usr/bin/arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2=1 -D_XOPEN_SOURCE=500 -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -o CMakeFiles/minc2_static.dir/volume_io/Volumes/input_volume.c.o -c /<>/volume_io/Volumes/input_volume.c [ 26%] Building C object CMakeFiles/minc2_static.dir/volume_io/Volumes/multidim_arrays.c.o /usr/bin/arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2=1 -D_XOPEN_SOURCE=500 -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -o CMakeFiles/minc2_static.dir/volume_io/Volumes/multidim_arrays.c.o -c /<>/volume_io/Volumes/multidim_arrays.c [ 27%] Building C object CMakeFiles/minc2_static.dir/volume_io/Volumes/output_mnc.c.o /usr/bin/arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2=1 -D_XOPEN_SOURCE=500 -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -o CMakeFiles/minc2_static.dir/volume_io/Volumes/output_mnc.c.o -c /<>/volume_io/Volumes/output_mnc.c /<>/volume_io/Volumes/output_mnc.c: In function 'add_minc_history': /<>/volume_io/Volumes/output_mnc.c:779:33: warning: conversion to 'size_t' {aka 'unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] new_history = alloc_string( old_att_length ); ^~~~~~~~~~~~~~ [ 27%] Building C object CMakeFiles/minc2_static.dir/volume_io/Volumes/output_volume.c.o /usr/bin/arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2=1 -D_XOPEN_SOURCE=500 -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -o CMakeFiles/minc2_static.dir/volume_io/Volumes/output_volume.c.o -c /<>/volume_io/Volumes/output_volume.c [ 28%] Building C object CMakeFiles/minc2_static.dir/volume_io/Volumes/set_hyperslab.c.o /usr/bin/arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2=1 -D_XOPEN_SOURCE=500 -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -o CMakeFiles/minc2_static.dir/volume_io/Volumes/set_hyperslab.c.o -c /<>/volume_io/Volumes/set_hyperslab.c [ 28%] Building C object CMakeFiles/minc2_static.dir/volume_io/Volumes/volume_cache.c.o /usr/bin/arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2=1 -D_XOPEN_SOURCE=500 -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -o CMakeFiles/minc2_static.dir/volume_io/Volumes/volume_cache.c.o -c /<>/volume_io/Volumes/volume_cache.c [ 29%] Building C object CMakeFiles/minc2_static.dir/volume_io/Volumes/volumes.c.o /usr/bin/arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2=1 -D_XOPEN_SOURCE=500 -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -o CMakeFiles/minc2_static.dir/volume_io/Volumes/volumes.c.o -c /<>/volume_io/Volumes/volumes.c /<>/volume_io/Volumes/volumes.c: In function 'copy_volume_definition_no_alloc': /<>/volume_io/Volumes/volumes.c:2630:60: warning: conversion to 'unsigned int' from 'int' may change the sign of the result [-Wsign-conversion] VIO_Real *irr_starts = malloc(sizeof(VIO_Real) * sizes[c]); ^ /<>/volume_io/Volumes/volumes.c:2631:60: warning: conversion to 'unsigned int' from 'int' may change the sign of the result [-Wsign-conversion] VIO_Real *irr_widths = malloc(sizeof(VIO_Real) * sizes[c]); ^ /<>/volume_io/Volumes/volumes.c: In function 'copy_volume_new_type': /<>/volume_io/Volumes/volumes.c:2819:44: warning: conversion from 'double' to 'signed char' may change value [-Wfloat-conversion] ((signed char *) dst)[i] = value; ^~~~~ /<>/volume_io/Volumes/volumes.c:2823:46: warning: conversion from 'double' to 'unsigned char' may change value [-Wfloat-conversion] ((unsigned char *) dst)[i] = value; ^~~~~ /<>/volume_io/Volumes/volumes.c:2829:45: warning: conversion from 'double' to 'short int' may change value [-Wfloat-conversion] ((signed short *) dst)[i] = value; ^~~~~ /<>/volume_io/Volumes/volumes.c:2833:47: warning: conversion from 'double' to 'short unsigned int' may change value [-Wfloat-conversion] ((unsigned short *) dst)[i] = value; ^~~~~ /<>/volume_io/Volumes/volumes.c:2839:43: warning: conversion from 'double' to 'int' may change value [-Wfloat-conversion] ((signed int *) dst)[i] = value; ^~~~~ /<>/volume_io/Volumes/volumes.c:2843:45: warning: conversion from 'double' to 'unsigned int' may change value [-Wfloat-conversion] ((unsigned int *) dst)[i] = value; ^~~~~ /<>/volume_io/Volumes/volumes.c:2847:34: warning: conversion from 'double' to 'float' may change value [-Wfloat-conversion] ((float *) dst)[i] = value; ^~~~~ /<>/volume_io/Volumes/volumes.c: In function 'set_volume_irregular_starts': /<>/volume_io/Volumes/volumes.c:2942:51: warning: conversion to 'long unsigned int' from 'long int' may change the sign of the result [-Wsign-conversion] volume->irregular_starts[idim] = malloc(count * sizeof (VIO_Real)); ^ /<>/volume_io/Volumes/volumes.c: In function 'set_volume_irregular_widths': /<>/volume_io/Volumes/volumes.c:2975:51: warning: conversion to 'long unsigned int' from 'long int' may change the sign of the result [-Wsign-conversion] volume->irregular_widths[idim] = malloc(count * sizeof (VIO_Real)); ^ [ 29%] Building C object CMakeFiles/minc2_static.dir/volume_io/Volumes/input_mnc2.c.o /usr/bin/arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2=1 -D_XOPEN_SOURCE=500 -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -o CMakeFiles/minc2_static.dir/volume_io/Volumes/input_mnc2.c.o -c /<>/volume_io/Volumes/input_mnc2.c /<>/volume_io/Volumes/input_mnc2.c: In function 'initialize_minc_input_from_minc2_id': /<>/volume_io/Volumes/input_mnc2.c:144:42: warning: conversion to 'misize_t' {aka 'long long unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] miget_dimension_sizes(file_dims, file->n_file_dimensions, dimension_size); ~~~~^~~~~~~~~~~~~~~~~~~ /<>/volume_io/Volumes/input_mnc2.c:145:63: warning: conversion to 'misize_t' {aka 'long long unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] miget_dimension_separations(file_dims, MI_ORDER_FILE, file->n_file_dimensions, file_step); ~~~~^~~~~~~~~~~~~~~~~~~ /<>/volume_io/Volumes/input_mnc2.c:146:58: warning: conversion to 'misize_t' {aka 'long long unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] miget_dimension_starts(file_dims, MI_ORDER_FILE, file->n_file_dimensions, file_start); ~~~~^~~~~~~~~~~~~~~~~~~ /<>/volume_io/Volumes/input_mnc2.c:153:32: warning: conversion from 'misize_t' {aka 'long long unsigned int'} to 'long int' may change value [-Wconversion] file->sizes_in_file[d] = dimension_size[d]; ^~~~~~~~~~~~~~ /<>/volume_io/Volumes/input_mnc2.c:179:21: warning: conversion to 'misize_t' {aka 'long long unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] slices_count*=dimension_size[d]; ^~ /<>/volume_io/Volumes/input_mnc2.c:179:23: warning: conversion from 'misize_t' {aka 'long long unsigned int'} to 'int' may change value [-Wconversion] slices_count*=dimension_size[d]; ^~~~~~~~~~~~~~ /<>/volume_io/Volumes/input_mnc2.c:181:38: warning: conversion to 'size_t' {aka 'unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] slice_start=(misize_t *)calloc(n_slice_dimensions,sizeof(misize_t)); ^~~~~~~~~~~~~~~~~~ /<>/volume_io/Volumes/input_mnc2.c:182:51: warning: conversion to 'size_t' {aka 'unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] miget_slice_range(file->minc2id,slice_start,n_slice_dimensions,&volume_max,&volume_min); ^~~~~~~~~~~~~~~~~~ /<>/volume_io/Volumes/input_mnc2.c:203:55: warning: conversion to 'size_t' {aka 'unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] miget_slice_range(file->minc2id,slice_start,n_slice_dimensions,&slice_max,&slice_min); ^~~~~~~~~~~~~~~~~~ /<>/volume_io/Volumes/input_mnc2.c:372:51: warning: conversion to 'long unsigned int' from 'long int' may change the sign of the result [-Wsign-conversion] irr_starts[d] = malloc(sizeof(VIO_Real) * file->sizes_in_file[d]); ^ /<>/volume_io/Volumes/input_mnc2.c:373:51: warning: conversion to 'long unsigned int' from 'long int' may change the sign of the result [-Wsign-conversion] irr_widths[d] = malloc(sizeof(VIO_Real) * file->sizes_in_file[d]); ^ /<>/volume_io/Volumes/input_mnc2.c: In function 'input_minc2_hyperslab': /<>/volume_io/Volumes/input_mnc2.c:707:37: warning: conversion to 'misize_t' {aka 'long long unsigned int'} from 'long int' may change the sign of the result [-Wsign-conversion] used_count[n_file_dims] = file->sizes_in_file[n_file_dims]; ^~~~ [ 29%] Building C object CMakeFiles/minc2_static.dir/volume_io/Volumes/output_mnc2.c.o /usr/bin/arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2=1 -D_XOPEN_SOURCE=500 -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -o CMakeFiles/minc2_static.dir/volume_io/Volumes/output_mnc2.c.o -c /<>/volume_io/Volumes/output_mnc2.c /<>/volume_io/Volumes/output_mnc2.c: In function 'output_minc2_hyperslab': /<>/volume_io/Volumes/output_mnc2.c:875:37: warning: conversion to 'misize_t' {aka 'long long unsigned int'} from 'long int' may change the sign of the result [-Wsign-conversion] long_file_start[file_ind] = (long) file_start[file_ind]; ^ /<>/volume_io/Volumes/output_mnc2.c:876:37: warning: conversion to 'misize_t' {aka 'long long unsigned int'} from 'long int' may change the sign of the result [-Wsign-conversion] long_file_count[file_ind] = (long) file_count[file_ind]; ^ /<>/volume_io/Volumes/output_mnc2.c: In function 'output_the_volume2': /<>/volume_io/Volumes/output_mnc2.c:1246:77: warning: conversion to 'size_t' {aka 'unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] miset_slice_range(file->minc2id,(const misize_t*)file_indices,file->n_file_dimensions,real_max,real_min); ~~~~^~~~~~~~~~~~~~~~~~~ [ 30%] Linking C static library libminc2_static.a /usr/bin/cmake -P CMakeFiles/minc2_static.dir/cmake_clean_target.cmake /usr/bin/cmake -E cmake_link_script CMakeFiles/minc2_static.dir/link.txt --verbose=1 /usr/bin/arm-linux-gnueabi-ar qc libminc2_static.a CMakeFiles/minc2_static.dir/libsrc2/convert.c.o CMakeFiles/minc2_static.dir/libsrc2/datatype.c.o CMakeFiles/minc2_static.dir/libsrc2/dimension.c.o CMakeFiles/minc2_static.dir/libsrc2/free.c.o CMakeFiles/minc2_static.dir/libsrc2/grpattr.c.o CMakeFiles/minc2_static.dir/libsrc2/hyper.c.o CMakeFiles/minc2_static.dir/libsrc2/label.c.o CMakeFiles/minc2_static.dir/libsrc2/m2util.c.o CMakeFiles/minc2_static.dir/libsrc2/record.c.o CMakeFiles/minc2_static.dir/libsrc2/slice.c.o CMakeFiles/minc2_static.dir/libsrc2/valid.c.o CMakeFiles/minc2_static.dir/libsrc2/volprops.c.o CMakeFiles/minc2_static.dir/libsrc2/volume.c.o CMakeFiles/minc2_static.dir/libcommon/minc2_error.c.o CMakeFiles/minc2_static.dir/libcommon/minc_config.c.o CMakeFiles/minc2_static.dir/libcommon/minc_error.c.o CMakeFiles/minc2_static.dir/libcommon/ParseArgv.c.o CMakeFiles/minc2_static.dir/libcommon/read_file_names.c.o CMakeFiles/minc2_static.dir/libcommon/restructure.c.o CMakeFiles/minc2_static.dir/libcommon/time_stamp.c.o CMakeFiles/minc2_static.dir/libsrc/dim_conversion.c.o CMakeFiles/minc2_static.dir/libsrc/image_conversion.c.o CMakeFiles/minc2_static.dir/libsrc/minc_convenience.c.o CMakeFiles/minc2_static.dir/libsrc/nd_loop.c.o CMakeFiles/minc2_static.dir/libsrc/netcdf_convenience.c.o CMakeFiles/minc2_static.dir/libsrc/value_conversion.c.o CMakeFiles/minc2_static.dir/libsrc/voxel_loop.c.o CMakeFiles/minc2_static.dir/libsrc/hdf_convenience.c.o CMakeFiles/minc2_static.dir/libsrc/minc_compat.c.o CMakeFiles/minc2_static.dir/libsrc/minc_simple.c.o CMakeFiles/minc2_static.dir/libsrc/minc_format_convert.c.o CMakeFiles/minc2_static.dir/volume_io/Geometry/colour.c.o CMakeFiles/minc2_static.dir/volume_io/Geometry/colour_def.c.o CMakeFiles/minc2_static.dir/volume_io/Geometry/gaussian.c.o CMakeFiles/minc2_static.dir/volume_io/Geometry/inverse.c.o CMakeFiles/minc2_static.dir/volume_io/Geometry/newton.c.o CMakeFiles/minc2_static.dir/volume_io/Geometry/points.c.o CMakeFiles/minc2_static.dir/volume_io/Geometry/splines.c.o CMakeFiles/minc2_static.dir/volume_io/Geometry/tensors.c.o CMakeFiles/minc2_static.dir/volume_io/Geometry/transforms.c.o CMakeFiles/minc2_static.dir/volume_io/MNI_formats/gen_xf_io.c.o CMakeFiles/minc2_static.dir/volume_io/MNI_formats/gen_xfs.c.o CMakeFiles/minc2_static.dir/volume_io/MNI_formats/grid_transforms.c.o CMakeFiles/minc2_static.dir/volume_io/MNI_formats/mni_io.c.o CMakeFiles/minc2_static.dir/volume_io/MNI_formats/tag_points.c.o CMakeFiles/minc2_static.dir/volume_io/MNI_formats/thin_plate_spline.c.o CMakeFiles/minc2_static.dir/volume_io/Prog_utils/alloc.c.o CMakeFiles/minc2_static.dir/volume_io/Prog_utils/alloc_check.c.o CMakeFiles/minc2_static.dir/volume_io/Prog_utils/arrays.c.o CMakeFiles/minc2_static.dir/volume_io/Prog_utils/files.c.o CMakeFiles/minc2_static.dir/volume_io/Prog_utils/print.c.o CMakeFiles/minc2_static.dir/volume_io/Prog_utils/progress.c.o CMakeFiles/minc2_static.dir/volume_io/Prog_utils/string.c.o CMakeFiles/minc2_static.dir/volume_io/Prog_utils/time.c.o CMakeFiles/minc2_static.dir/volume_io/Volumes/evaluate.c.o CMakeFiles/minc2_static.dir/volume_io/Volumes/get_hyperslab.c.o CMakeFiles/minc2_static.dir/volume_io/Volumes/input_free.c.o CMakeFiles/minc2_static.dir/volume_io/Volumes/input_mnc.c.o CMakeFiles/minc2_static.dir/volume_io/Volumes/input_volume.c.o CMakeFiles/minc2_static.dir/volume_io/Volumes/multidim_arrays.c.o CMakeFiles/minc2_static.dir/volume_io/Volumes/output_mnc.c.o CMakeFiles/minc2_static.dir/volume_io/Volumes/output_volume.c.o CMakeFiles/minc2_static.dir/volume_io/Volumes/set_hyperslab.c.o CMakeFiles/minc2_static.dir/volume_io/Volumes/volume_cache.c.o CMakeFiles/minc2_static.dir/volume_io/Volumes/volumes.c.o CMakeFiles/minc2_static.dir/volume_io/Volumes/input_mnc2.c.o CMakeFiles/minc2_static.dir/volume_io/Volumes/output_mnc2.c.o /usr/bin/arm-linux-gnueabi-ranlib libminc2_static.a make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' [ 30%] Built target minc2_static make -f CMakeFiles/minc2.dir/build.make CMakeFiles/minc2.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/CMakeFiles/minc2.dir/DependInfo.cmake --color= Scanning dependencies of target minc2 make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f CMakeFiles/minc2.dir/build.make CMakeFiles/minc2.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' [ 31%] Building C object CMakeFiles/minc2.dir/libsrc2/convert.c.o /usr/bin/arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2=1 -D_XOPEN_SOURCE=500 -Dminc2_EXPORTS -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -fPIC -o CMakeFiles/minc2.dir/libsrc2/convert.c.o -c /<>/libsrc2/convert.c /<>/libsrc2/convert.c: In function 'miconvert_voxel_to_real': /<>/libsrc2/convert.c:107:39: warning: conversion to 'size_t' {aka 'unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] miget_slice_range(volume, coords, ncoords, &slice_max, &slice_min); ^~~~~~~ /<>/libsrc2/convert.c: In function 'miset_real_value': /<>/libsrc2/convert.c:256:45: warning: conversion to 'size_t' {aka 'unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] miconvert_real_to_voxel(volume, coords, ndims, value, &voxel); ^~~~~ /<>/libsrc2/convert.c: In function 'miget_volume_real_range': /<>/libsrc2/convert.c:528:23: warning: conversion to 'unsigned int' from 'int' may change the sign of the result [-Wsign-conversion] buffer = malloc(n * sizeof(double)); ^ /<>/libsrc2/convert.c:554:23: warning: conversion to 'unsigned int' from 'int' may change the sign of the result [-Wsign-conversion] buffer = malloc(n * sizeof(double)); ^ [ 31%] Building C object CMakeFiles/minc2.dir/libsrc2/datatype.c.o /usr/bin/arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2=1 -D_XOPEN_SOURCE=500 -Dminc2_EXPORTS -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -fPIC -o CMakeFiles/minc2.dir/libsrc2/datatype.c.o -c /<>/libsrc2/datatype.c [ 32%] Building C object CMakeFiles/minc2.dir/libsrc2/dimension.c.o /usr/bin/arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2=1 -D_XOPEN_SOURCE=500 -Dminc2_EXPORTS -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -fPIC -o CMakeFiles/minc2.dir/libsrc2/dimension.c.o -c /<>/libsrc2/dimension.c /<>/libsrc2/dimension.c: In function 'micopy_dimension': /<>/libsrc2/dimension.c:99:61: warning: conversion from 'misize_t' {aka 'long long unsigned int'} to 'size_t' {aka 'unsigned int'} may change value [-Wconversion] handle->offsets = ( double * ) malloc ( dim_ptr->length * sizeof ( double ) ); ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /<>/libsrc2/dimension.c:135:60: warning: conversion from 'misize_t' {aka 'long long unsigned int'} to 'size_t' {aka 'unsigned int'} may change value [-Wconversion] handle->widths = ( double * ) malloc ( dim_ptr->length * sizeof ( double ) ); ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /<>/libsrc2/dimension.c: In function 'micreate_dimension': /<>/libsrc2/dimension.c:288:51: warning: conversion from 'misize_t' {aka 'long long unsigned int'} to 'size_t' {aka 'unsigned int'} may change value [-Wconversion] handle->widths = ( double * ) malloc ( length * sizeof ( double ) ); ~~~~~~~^~~~~~~~~~~~~~~~~~~ /<>/libsrc2/dimension.c: In function 'miget_volume_dimensions': /<>/libsrc2/dimension.c:417:20: warning: conversion to 'hsize_t' {aka 'long long unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] number_of_dims = volume->number_of_dims; ^~~~~~ /<>/libsrc2/dimension.c:422:16: warning: conversion to 'hsize_t' {aka 'long long unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] max_dims = array_length; ^~~~~~~~~~~~ /<>/libsrc2/dimension.c: In function 'miset_apparent_dimension_order': /<>/libsrc2/dimension.c:486:69: warning: conversion to 'unsigned int' from 'int' may change the sign of the result [-Wsign-conversion] volume->dim_indices = ( int * ) malloc ( volume->number_of_dims * sizeof ( int ) ); ^ /<>/libsrc2/dimension.c: In function 'miset_apparent_dimension_order_by_name': /<>/libsrc2/dimension.c:580:69: warning: conversion to 'unsigned int' from 'int' may change the sign of the result [-Wsign-conversion] volume->dim_indices = ( int * ) malloc ( volume->number_of_dims * sizeof ( int ) ); ^ /<>/libsrc2/dimension.c: In function 'miget_dimension_offsets': /<>/libsrc2/dimension.c:1036:43: warning: conversion from 'misize_t' {aka 'long long unsigned int'} to 'double' may change value [-Wconversion] offsets[j] = dimension->start + ( i * dimension->step ); ^ /<>/libsrc2/dimension.c: In function 'miset_dimension_offsets': /<>/libsrc2/dimension.c:1083:47: warning: conversion from 'misize_t' {aka 'long long unsigned int'} to 'size_t' {aka 'unsigned int'} may change value [-Wconversion] ( double * ) malloc ( dimension->length * sizeof ( double ) ); ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /<>/libsrc2/dimension.c: In function 'miset_dimension_sampling_flag': /<>/libsrc2/dimension.c:1136:21: warning: unsigned conversion from 'int' to 'midimattr_t' {aka 'unsigned int'} changes value from '-2' to '4294967294' [-Wsign-conversion] dimension->attr &= ~MI_DIMATTR_REGULARLY_SAMPLED; ^~ /<>/libsrc2/dimension.c:1138:21: warning: unsigned conversion from 'int' to 'midimattr_t' {aka 'unsigned int'} changes value from '-3' to '4294967293' [-Wsign-conversion] dimension->attr &= ~MI_DIMATTR_NOT_REGULARLY_SAMPLED; ^~ /<>/libsrc2/dimension.c: In function 'miget_dimension_start': /<>/libsrc2/dimension.c:1356:57: warning: conversion from 'misize_t' {aka 'long long unsigned int'} to 'double' may change value [-Wconversion] *start_ptr = dimension->start + ( dimension->step * ( dimension->length - 1 ) ); ^ /<>/libsrc2/dimension.c:1362:61: warning: conversion from 'misize_t' {aka 'long long unsigned int'} to 'double' may change value [-Wconversion] *start_ptr = dimension->start + ( dimension->step * ( dimension->length - 1 ) ); ^ /<>/libsrc2/dimension.c:1369:63: warning: conversion from 'misize_t' {aka 'long long unsigned int'} to 'double' may change value [-Wconversion] *start_ptr = dimension->start + ( dimension->step * ( dimension->length - 1 ) ); ^ /<>/libsrc2/dimension.c: In function 'miset_dimension_widths': /<>/libsrc2/dimension.c:1651:65: warning: conversion from 'misize_t' {aka 'long long unsigned int'} to 'size_t' {aka 'unsigned int'} may change value [-Wconversion] dimension->widths = ( double * ) malloc ( dimension->length * sizeof ( double ) ); ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ [ 32%] Building C object CMakeFiles/minc2.dir/libsrc2/free.c.o /usr/bin/arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2=1 -D_XOPEN_SOURCE=500 -Dminc2_EXPORTS -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -fPIC -o CMakeFiles/minc2.dir/libsrc2/free.c.o -c /<>/libsrc2/free.c [ 32%] Building C object CMakeFiles/minc2.dir/libsrc2/grpattr.c.o /usr/bin/arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2=1 -D_XOPEN_SOURCE=500 -Dminc2_EXPORTS -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -fPIC -o CMakeFiles/minc2.dir/libsrc2/grpattr.c.o -c /<>/libsrc2/grpattr.c /<>/libsrc2/grpattr.c: In function 'full_path_for_attr': /<>/libsrc2/grpattr.c:41:24: warning: conversion to 'size_t' {aka 'unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] snprintf(fullpath, length, MI_ROOT_PATH "/image/%d", ^~~~~~ /<>/libsrc2/grpattr.c:48:46: warning: conversion to 'size_t' {aka 'unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] strncpy ( fullpath, MI_ROOT_PATH "/" , length ); ^~~~~~ /<>/libsrc2/grpattr.c:50:58: warning: conversion to 'size_t' {aka 'unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] strncpy ( fullpath, MI_ROOT_PATH "/" MI_INFO_NAME, length ); ^~~~~~ /<>/libsrc2/grpattr.c:55:35: warning: conversion to 'size_t' {aka 'unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] strncat(fullpath, "/", length - strlen(fullpath) - 1); ^ /<>/libsrc2/grpattr.c:58:35: warning: conversion to 'size_t' {aka 'unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] strncat(fullpath, path, length - strlen(fullpath) - 1); ^ /<>/libsrc2/grpattr.c: In function 'full_path_for_group': /<>/libsrc2/grpattr.c:64:52: warning: conversion to 'size_t' {aka 'unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] strncpy(fullpath, MI_ROOT_PATH "/" MI_INFO_NAME, length); ^~~~~~ /<>/libsrc2/grpattr.c:67:35: warning: conversion to 'size_t' {aka 'unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] strncat(fullpath, "/", length - strlen(fullpath) - 1); ^ /<>/libsrc2/grpattr.c:70:35: warning: conversion to 'size_t' {aka 'unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] strncat(fullpath, path, length - strlen(fullpath) - 1); ^ /<>/libsrc2/grpattr.c: In function 'milist_recursion': /<>/libsrc2/grpattr.c:124:22: warning: conversion to 'hsize_t' {aka 'long long unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] data->frame_ptr->grp_idx ); ~~~~~~~~~~~~~~~^~~~~~~~~ /<>/libsrc2/grpattr.c:157:58: warning: conversion to 'hsize_t' {aka 'long long unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] data->frame_ptr->grp_idx - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~ /<>/libsrc2/grpattr.c: In function 'milist_attr_op': /<>/libsrc2/grpattr.c:198:44: warning: conversion to 'size_t' {aka 'unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] strncpy ( data->name_ptr, attr_name, data->name_len ); ~~~~^~~~~~~~~~ /<>/libsrc2/grpattr.c: In function 'milist_attr_next': /<>/libsrc2/grpattr.c:223:49: warning: conversion to 'size_t' {aka 'unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] strncpy ( path, data->frame_ptr->relpath, maxpath ); ^~~~~~~ /<>/libsrc2/grpattr.c: In function 'milist_grp_next': /<>/libsrc2/grpattr.c:314:49: warning: conversion to 'size_t' {aka 'unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] strncpy ( path, data->frame_ptr->relpath, maxpath ); ^~~~~~~ /<>/libsrc2/grpattr.c:315:48: warning: conversion to 'size_t' {aka 'unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] strncpy ( data->frame_ptr->relpath, tmp, maxpath ); ^~~~~~~ /<>/libsrc2/grpattr.c: In function 'miget_attr_length': /<>/libsrc2/grpattr.c:551:15: warning: conversion from 'hsize_t' {aka 'long long unsigned int'} to 'size_t' {aka 'unsigned int'} may change value [-Wconversion] *length = hdf_dims[0]; ^~~~~~~~ /<>/libsrc2/grpattr.c: In function 'miset_attr_values': /<>/libsrc2/grpattr.c:906:31: warning: conversion to 'size_t' {aka 'unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] slength = strlen ( path ) - ( pch - path ); ^ /<>/libsrc2/grpattr.c:910:41: warning: conversion to 'size_t' {aka 'unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] std_name[i] = path[pch - path + 1 + i]; ^ [ 33%] Building C object CMakeFiles/minc2.dir/libsrc2/hyper.c.o /usr/bin/arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2=1 -D_XOPEN_SOURCE=500 -Dminc2_EXPORTS -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -fPIC -o CMakeFiles/minc2.dir/libsrc2/hyper.c.o -c /<>/libsrc2/hyper.c /<>/libsrc2/hyper.c: In function 'mirw_hyperslab_raw': /<>/libsrc2/hyper.c:256:21: warning: conversion from 'misize_t' {aka 'const long long unsigned int'} to 'size_t' {aka 'unsigned int'} may change value [-Wconversion] icount[i] = count[i]; ^~~~~ /<>/libsrc2/hyper.c:258:25: warning: conversion to 'size_t' {aka 'unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] restructure_array(ndims, buffer, icount, H5Tget_size(type_id), ^~~~~ /<>/libsrc2/hyper.c:276:42: warning: conversion from 'misize_t' {aka 'const long long unsigned int'} to 'size_t' {aka 'unsigned int'} may change value [-Wconversion] icount[volume->dim_indices[i]] = count[i]; ^~~~~ /<>/libsrc2/hyper.c:286:26: warning: conversion from 'misize_t' {aka 'long long unsigned int'} to 'size_t' {aka 'unsigned int'} may change value [-Wconversion] temp_buffer=malloc(buffer_size); ^~~~~~~~~~~ /<>/libsrc2/hyper.c:294:33: warning: conversion from 'misize_t' {aka 'long long unsigned int'} to 'size_t' {aka 'unsigned int'} may change value [-Wconversion] memcpy(temp_buffer,buffer,buffer_size); ^~~~~~~~~~~ /<>/libsrc2/hyper.c:296:25: warning: conversion to 'size_t' {aka 'unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] restructure_array(ndims, temp_buffer, icount, H5Tget_size(type_id), ^~~~~ /<>/libsrc2/hyper.c: In function 'mirw_hyperslab_icv': /<>/libsrc2/hyper.c:433:11: warning: conversion to 'hsize_t' {aka 'long long unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] ndims = volume->number_of_dims; ^~~~~~ /<>/libsrc2/hyper.c:445:32: warning: conversion from 'hsize_t' {aka 'long long unsigned int'} to 'int' may change value [-Wconversion] mspc_id = H5Screate_simple(ndims, hdf_count, NULL); ^~~~~ /<>/libsrc2/hyper.c:453:44: warning: conversion from 'hsize_t' {aka 'long long unsigned int'} to 'int' may change value [-Wconversion] miget_hyperslab_size_hdf(buffer_type_id, ndims, hdf_count, &buffer_size); ^~~~~ /<>/libsrc2/hyper.c:496:21: warning: conversion from 'hsize_t' {aka 'long long unsigned int'} to 'int' may change value [-Wconversion] slice_ndims = ndims; ^~~~~ /<>/libsrc2/hyper.c:507:14: warning: conversion to 'hsize_t' {aka 'long long unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] for (i = slice_ndims; i < ndims; i++ ) { ^~~~~~~~~~~ /<>/libsrc2/hyper.c:515:57: warning: conversion from 'hsize_t' {aka 'long long unsigned int'} to 'size_t' {aka 'unsigned int'} may change value [-Wconversion] image_slice_max_buffer=malloc(total_number_of_slices*sizeof(double)); ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/libsrc2/hyper.c:523:57: warning: conversion from 'hsize_t' {aka 'long long unsigned int'} to 'size_t' {aka 'unsigned int'} may change value [-Wconversion] image_slice_min_buffer=malloc(total_number_of_slices*sizeof(double)); ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/libsrc2/hyper.c:661:21: warning: conversion from 'misize_t' {aka 'const long long unsigned int'} to 'size_t' {aka 'unsigned int'} may change value [-Wconversion] icount[i] = count[i]; ^~~~~ /<>/libsrc2/hyper.c:663:25: warning: conversion from 'hsize_t' {aka 'long long unsigned int'} to 'size_t' {aka 'unsigned int'} may change value [-Wconversion] restructure_array(ndims, buffer, icount, H5Tget_size(buffer_type_id),volume->dim_indices, dir); ^~~~~ /<>/libsrc2/hyper.c:674:42: warning: conversion from 'misize_t' {aka 'const long long unsigned int'} to 'size_t' {aka 'unsigned int'} may change value [-Wconversion] icount[volume->dim_indices[i]] = count[i]; ^~~~~ /<>/libsrc2/hyper.c:677:40: warning: conversion from 'hsize_t' {aka 'long long unsigned int'} to 'int' may change value [-Wconversion] imap[volume->dim_indices[i]] = i; ^ /<>/libsrc2/hyper.c:684:26: warning: conversion from 'misize_t' {aka 'long long unsigned int'} to 'size_t' {aka 'unsigned int'} may change value [-Wconversion] temp_buffer=malloc(buffer_size); ^~~~~~~~~~~ /<>/libsrc2/hyper.c:691:33: warning: conversion from 'misize_t' {aka 'long long unsigned int'} to 'size_t' {aka 'unsigned int'} may change value [-Wconversion] memcpy(temp_buffer,buffer,buffer_size); ^~~~~~~~~~~ /<>/libsrc2/hyper.c:694:27: warning: conversion from 'hsize_t' {aka 'long long unsigned int'} to 'size_t' {aka 'unsigned int'} may change value [-Wconversion] restructure_array(ndims, temp_buffer, icount, H5Tget_size(buffer_type_id), imap, idir); ^~~~~ /<>/libsrc2/hyper.c: In function 'mirw_hyperslab_normalized': /<>/libsrc2/hyper.c:922:11: warning: conversion to 'hsize_t' {aka 'long long unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] ndims = volume->number_of_dims; ^~~~~~ In file included from /<>/libcommon/minc2_error.h:38, from /<>/libsrc2/minc2.h:11, from /<>/libsrc2/hyper.c:16: /<>/libsrc2/hyper.c:933:50: warning: conversion from 'hsize_t' {aka 'long long unsigned int'} to 'int' may change value [-Wconversion] MI_CHECK_HDF_CALL(mspc_id = H5Screate_simple(ndims, hdf_count, NULL),"H5Screate_simple"); ^~~~~ /<>/libcommon/minc_error.h:188:42: note: in definition of macro 'MI_CHECK_HDF_CALL' #define MI_CHECK_HDF_CALL(var,call) {if((var)<0) MI_LOG_ERROR(MI2_MSG_HDF5,call);} ^~~ /<>/libsrc2/hyper.c:940:43: warning: conversion from 'hsize_t' {aka 'long long unsigned int'} to 'int' may change value [-Wconversion] miget_hyperslab_size_hdf(volume_type_id,ndims,hdf_count,&buffer_size); ^~~~~ /<>/libsrc2/hyper.c:941:43: warning: conversion from 'hsize_t' {aka 'long long unsigned int'} to 'int' may change value [-Wconversion] miget_hyperslab_size_hdf(buffer_type_id,ndims,hdf_count,&input_buffer_size); ^~~~~ /<>/libsrc2/hyper.c:980:21: warning: conversion from 'hsize_t' {aka 'long long unsigned int'} to 'int' may change value [-Wconversion] slice_ndims = ndims; ^~~~~ /<>/libsrc2/hyper.c:991:14: warning: conversion to 'hsize_t' {aka 'long long unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] for (i = slice_ndims; i < ndims; i++ ) { ^~~~~~~~~~~ /<>/libsrc2/hyper.c:999:57: warning: conversion from 'hsize_t' {aka 'long long unsigned int'} to 'size_t' {aka 'unsigned int'} may change value [-Wconversion] image_slice_max_buffer=malloc(total_number_of_slices*sizeof(double)); ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/libsrc2/hyper.c:1000:57: warning: conversion from 'hsize_t' {aka 'long long unsigned int'} to 'size_t' {aka 'unsigned int'} may change value [-Wconversion] image_slice_min_buffer=malloc(total_number_of_slices*sizeof(double)); ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/libsrc2/hyper.c:1052:31: warning: conversion from 'misize_t' {aka 'long long unsigned int'} to 'size_t' {aka 'unsigned int'} may change value [-Wconversion] temp_buffer=(double*)malloc(buffer_size); ^~~~~~~~~~~ /<>/libsrc2/hyper.c:1103:22: warning: conversion from 'misize_t' {aka 'const long long unsigned int'} to 'size_t' {aka 'unsigned int'} may change value [-Wconversion] icount[i] = count[i]; ^~~~~ /<>/libsrc2/hyper.c:1105:25: warning: conversion from 'hsize_t' {aka 'long long unsigned int'} to 'size_t' {aka 'unsigned int'} may change value [-Wconversion] restructure_array(ndims, buffer, icount, H5Tget_size(buffer_type_id),volume->dim_indices, dir); ^~~~~ /<>/libsrc2/hyper.c:1116:42: warning: conversion from 'misize_t' {aka 'const long long unsigned int'} to 'size_t' {aka 'unsigned int'} may change value [-Wconversion] icount[volume->dim_indices[i]] = count[i]; ^~~~~ /<>/libsrc2/hyper.c:1119:40: warning: conversion from 'hsize_t' {aka 'long long unsigned int'} to 'int' may change value [-Wconversion] imap[volume->dim_indices[i]] = i; ^ /<>/libsrc2/hyper.c:1125:25: warning: conversion from 'misize_t' {aka 'long long unsigned int'} to 'size_t' {aka 'unsigned int'} may change value [-Wconversion] temp_buffer2=malloc(input_buffer_size); ^~~~~~~~~~~~~~~~~ /<>/libsrc2/hyper.c:1132:32: warning: conversion from 'misize_t' {aka 'long long unsigned int'} to 'size_t' {aka 'unsigned int'} may change value [-Wconversion] memcpy(temp_buffer2,buffer,input_buffer_size); ^~~~~~~~~~~~~~~~~ /<>/libsrc2/hyper.c:1135:25: warning: conversion from 'hsize_t' {aka 'long long unsigned int'} to 'size_t' {aka 'unsigned int'} may change value [-Wconversion] restructure_array(ndims, temp_buffer2, icount, H5Tget_size(buffer_type_id), imap, idir); ^~~~~ [ 33%] Building C object CMakeFiles/minc2.dir/libsrc2/label.c.o /usr/bin/arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2=1 -D_XOPEN_SOURCE=500 -Dminc2_EXPORTS -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -fPIC -o CMakeFiles/minc2.dir/libsrc2/label.c.o -c /<>/libsrc2/label.c /<>/libsrc2/label.c: In function 'miswap4': /<>/libsrc2/label.c:40:12: warning: conversion to 'int' from 'unsigned int' may change the sign of the result [-Wsign-conversion] return (tmp); ^ /<>/libsrc2/label.c: In function 'miget_label_value_by_index': /<>/libsrc2/label.c:199:51: warning: conversion to 'unsigned int' from 'int' may change the sign of the result [-Wsign-conversion] result = H5Tget_member_value(volume->mtype_id,idx,value); ^~~ [ 34%] Building C object CMakeFiles/minc2.dir/libsrc2/m2util.c.o /usr/bin/arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2=1 -D_XOPEN_SOURCE=500 -Dminc2_EXPORTS -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -fPIC -o CMakeFiles/minc2.dir/libsrc2/m2util.c.o -c /<>/libsrc2/m2util.c /<>/libsrc2/m2util.c: In function 'midownsample_slice': /<>/libsrc2/m2util.c:1491:18: warning: conversion to 'size_t' {aka 'unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] x1 = x; ^ /<>/libsrc2/m2util.c:1492:26: warning: conversion to 'hsize_t' {aka 'long long unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] y1 = y + ( j * scale ); ^ /<>/libsrc2/m2util.c:1492:20: warning: conversion to 'hsize_t' {aka 'long long unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] y1 = y + ( j * scale ); ^ /<>/libsrc2/m2util.c:1492:18: warning: conversion from 'hsize_t' {aka 'long long unsigned int'} to 'size_t' {aka 'unsigned int'} may change value [-Wconversion] y1 = y + ( j * scale ); ^ /<>/libsrc2/m2util.c:1493:26: warning: conversion to 'hsize_t' {aka 'long long unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] z1 = z + ( k * scale ); ^ /<>/libsrc2/m2util.c:1493:20: warning: conversion to 'hsize_t' {aka 'long long unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] z1 = z + ( k * scale ); ^ /<>/libsrc2/m2util.c:1493:18: warning: conversion from 'hsize_t' {aka 'long long unsigned int'} to 'size_t' {aka 'unsigned int'} may change value [-Wconversion] z1 = z + ( k * scale ); ^ /<>/libsrc2/m2util.c: In function 'miconvert_hyperslab_to_real': /<>/libsrc2/m2util.c:1602:46: warning: conversion to 'size_t' {aka 'unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] r = miget_slice_range ( volume, pos, volume->number_of_dims, ~~~~~~^~~~~~~~~~~~~~~~ /<>/libsrc2/m2util.c:1627:52: warning: conversion to 'size_t' {aka 'unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] r = miget_slice_range ( volume, pos, volume->number_of_dims, ~~~~~~^~~~~~~~~~~~~~~~ /<>/libsrc2/m2util.c: In function 'minc_update_thumbnail': /<>/libsrc2/m2util.c:1719:25: warning: conversion to 'hsize_t' {aka 'long long unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] osize[i] = isize[i] / scale; ^ /<>/libsrc2/m2util.c:1779:20: warning: conversion to 'hsize_t' {aka 'long long unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] in_bytes = scale * isize[1] * isize[2] * sizeof ( double ); ^ /<>/libsrc2/m2util.c:1779:14: warning: conversion from 'hsize_t' {aka 'long long unsigned int'} to 'size_t' {aka 'unsigned int'} may change value [-Wconversion] in_bytes = scale * isize[1] * isize[2] * sizeof ( double ); ^~~~~ /<>/libsrc2/m2util.c:1782:15: warning: conversion from 'hsize_t' {aka 'long long unsigned int'} to 'size_t' {aka 'unsigned int'} may change value [-Wconversion] out_bytes = osize[1] * osize[2] * sizeof ( double ); ^~~~~ /<>/libsrc2/m2util.c:1785:14: warning: conversion to 'hsize_t' {aka 'long long unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] count[0] = scale; ^~~~~ /<>/libsrc2/m2util.c:1800:22: warning: conversion to 'hsize_t' {aka 'long long unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] start[0] = slice * scale; ^ /<>/libsrc2/m2util.c:1803:16: warning: conversion to 'hsize_t' {aka 'long long unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] count[0] = scale; ^~~~~ /<>/libsrc2/m2util.c: In function 'alloc1d': /<>/libsrc2/m2util.c:1914:52: warning: conversion to 'unsigned int' from 'int' may change the sign of the result [-Wsign-conversion] return ( ( double * ) malloc ( sizeof ( double ) * n ) ); ^ /<>/libsrc2/m2util.c: In function 'alloc2d': /<>/libsrc2/m2util.c:1923:34: warning: conversion to 'unsigned int' from 'int' may change the sign of the result [-Wsign-conversion] mat = ( double ** ) malloc ( n * sizeof ( double * ) ); ^ /<>/libsrc2/m2util.c:1930:38: warning: conversion to 'unsigned int' from 'int' may change the sign of the result [-Wsign-conversion] mat[i] = ( double * ) malloc ( m * sizeof ( double ) ); ^ [ 34%] Building C object CMakeFiles/minc2.dir/libsrc2/record.c.o /usr/bin/arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2=1 -D_XOPEN_SOURCE=500 -Dminc2_EXPORTS -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -fPIC -o CMakeFiles/minc2.dir/libsrc2/record.c.o -c /<>/libsrc2/record.c /<>/libsrc2/record.c: In function 'miget_record_field_name': /<>/libsrc2/record.c:57:50: warning: conversion to 'unsigned int' from 'int' may change the sign of the result [-Wsign-conversion] *name = H5Tget_member_name(volume->ftype_id, index); ^~~~~ /<>/libsrc2/record.c: In function 'miset_record_field_name': /<>/libsrc2/record.c:91:20: warning: conversion to 'size_t' {aka 'unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] offset = index * H5Tget_size(ftype_id); ^ [ 35%] Building C object CMakeFiles/minc2.dir/libsrc2/slice.c.o /usr/bin/arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2=1 -D_XOPEN_SOURCE=500 -Dminc2_EXPORTS -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -fPIC -o CMakeFiles/minc2.dir/libsrc2/slice.c.o -c /<>/libsrc2/slice.c /<>/libsrc2/slice.c: In function 'mirw_slice_minmax': /<>/libsrc2/slice.c:72:11: warning: conversion to 'misize_t' {aka 'long long unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] ndims = H5Sget_simple_extent_ndims ( fspc_id ); ^~~~~~~~~~~~~~~~~~~~~~~~~~ [ 35%] Building C object CMakeFiles/minc2.dir/libsrc2/valid.c.o /usr/bin/arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2=1 -D_XOPEN_SOURCE=500 -Dminc2_EXPORTS -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -fPIC -o CMakeFiles/minc2.dir/libsrc2/valid.c.o -c /<>/libsrc2/valid.c [ 35%] Building C object CMakeFiles/minc2.dir/libsrc2/volprops.c.o /usr/bin/arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2=1 -D_XOPEN_SOURCE=500 -Dminc2_EXPORTS -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -fPIC -o CMakeFiles/minc2.dir/libsrc2/volprops.c.o -c /<>/libsrc2/volprops.c /<>/libsrc2/volprops.c: In function 'miget_volume_props': /<>/libsrc2/volprops.c:133:60: warning: conversion to 'unsigned int' from 'int' may change the sign of the result [-Wsign-conversion] handle->edge_lengths = (int *)malloc(handle->edge_count*sizeof(int)); ^ /<>/libsrc2/volprops.c:139:33: warning: conversion from 'hsize_t' {aka 'long long unsigned int'} to 'int' may change value [-Wconversion] handle->edge_lengths[i] = dims[i]; ^~~~ /<>/libsrc2/volprops.c:151:43: warning: conversion to 'unsigned int' from 'int' may change the sign of the result [-Wsign-conversion] fcode = H5Pget_filter1(hdf_plist, i, &flags, &cd_nelmts, ^ /<>/libsrc2/volprops.c:156:34: warning: conversion to 'int' from 'unsigned int' may change the sign of the result [-Wsign-conversion] handle->zlib_level = cd_values[0]; ^~~~~~~~~ /<>/libsrc2/volprops.c: In function 'miset_props_blocking': /<>/libsrc2/volprops.c:432:52: warning: conversion to 'unsigned int' from 'int' may change the sign of the result [-Wsign-conversion] props->edge_lengths = (int *) malloc(edge_count*sizeof(int)); ^ [ 36%] Building C object CMakeFiles/minc2.dir/libsrc2/volume.c.o /usr/bin/arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2=1 -D_XOPEN_SOURCE=500 -Dminc2_EXPORTS -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -fPIC -o CMakeFiles/minc2.dir/libsrc2/volume.c.o -c /<>/libsrc2/volume.c /<>/libsrc2/volume.c: In function '_hdf_open': /<>/libsrc2/volume.c:120:117: warning: conversion to 'size_t' {aka 'unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] H5Pset_cache(prp_id, 0, 2503, miget_cfg_present(MICFG_MINC_FILE_CACHE)?miget_cfg_int(MICFG_MINC_FILE_CACHE)*100000:_MI1_MAX_VAR_BUFFER_SIZE*10, 1.0); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/libsrc2/volume.c:132:24: warning: conversion to 'unsigned int' from 'int' may change the sign of the result [-Wsign-conversion] fd = H5Fopen(path, mode, prp_id); ^~~~ /<>/libsrc2/volume.c: In function '_hdf_create': /<>/libsrc2/volume.c:224:115: warning: conversion to 'size_t' {aka 'unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] H5Pset_cache(fpid, 0, 2503, miget_cfg_present(MICFG_MINC_FILE_CACHE)?miget_cfg_int(MICFG_MINC_FILE_CACHE)*100000:_MI1_MAX_VAR_BUFFER_SIZE*100, 1.0); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/libsrc2/volume.c:227:26: warning: conversion to 'unsigned int' from 'int' may change the sign of the result [-Wsign-conversion] fd = H5Fcreate(path, cmode, H5P_DEFAULT, fpid); ^~~~~ In file included from /usr/include/hdf5/serial/hdf5.h:34, from /<>/libsrc2/volume.c:8: /<>/libsrc2/volume.c: In function 'micreate_volume': /usr/include/hdf5/serial/H5Ppublic.h:44:31: warning: conversion to 'int' from 'unsigned int' may change the sign of the result [-Wsign-conversion] #define H5OPEN H5open(), /usr/include/hdf5/serial/H5Fpublic.h:52:32: note: in expansion of macro 'H5OPEN' #define H5F_ACC_TRUNC (H5CHECK H5OPEN 0x0002u) /*overwrite existing files */ ^~~~~~ /<>/libsrc2/volume.c:584:35: note: in expansion of macro 'H5F_ACC_TRUNC' file_id = _hdf_create(filename, H5F_ACC_TRUNC); ^~~~~~~~~~~~~ /<>/libsrc2/volume.c:634:23: warning: conversion to 'hsize_t' {aka 'long long unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] hdf_size[i] = create_props->edge_lengths[i]; ^~~~~~~~~~~~ In file included from /<>/libcommon/minc2_error.h:38, from /<>/libsrc2/minc2.h:11, from /<>/libsrc2/volume.c:32: /<>/libsrc2/volume.c:664:72: warning: conversion to 'unsigned int' from 'int' may change the sign of the result [-Wsign-conversion] MI_CHECK_HDF_CALL_RET(stat = H5Pset_deflate(hdf_plist, create_props->zlib_level),"H5Pset_deflate") ~~~~~~~~~~~~^~~~~~~~~~~~ /<>/libcommon/minc_error.h:189:46: note: in definition of macro 'MI_CHECK_HDF_CALL_RET' #define MI_CHECK_HDF_CALL_RET(var,call) {if((var)<0) return MI_LOG_ERROR(MI2_MSG_HDF5,call);} ^~~ /<>/libsrc2/volume.c:896:70: warning: conversion to 'unsigned int' from 'int' may change the sign of the result [-Wsign-conversion] handle->dim_handles = (midimhandle_t *)malloc(number_of_dimensions * ^ In file included from /<>/libcommon/minc2_error.h:38, from /<>/libsrc2/minc2.h:11, from /<>/libsrc2/volume.c:32: /<>/libsrc2/volume.c:900:63: warning: conversion to 'unsigned int' from 'int' may change the sign of the result [-Wsign-conversion] return MI_LOG_ERROR(MI2_MSG_OUTOFMEM,number_of_dimensions * sizeof(midimhandle_t)); ^ /<>/libcommon/minc_error.h:187:75: note: in definition of macro 'MI_LOG_ERROR' #define MI_LOG_ERROR(code,...) mi2log_message(__FILE__, __LINE__, code, ##__VA_ARGS__ ) ^~~~~~~~~~~ /<>/libsrc2/volume.c:988:73: warning: conversion to 'unsigned int' from 'int' may change the sign of the result [-Wsign-conversion] props_handle->edge_lengths = (int *)malloc(create_props->max_lengths*sizeof(int)); ^ /<>/libsrc2/volume.c: In function '_miget_irregular_spacing': /<>/libsrc2/volume.c:1171:35: warning: conversion from 'hssize_t' {aka 'long long int'} to 'size_t' {aka 'unsigned int'} may change value [-Wconversion] hdim->offsets = malloc(n_points * sizeof(double)); ~~~~~~~~~^~~~~~~~~~~~~~~~ /<>/libsrc2/volume.c:1195:34: warning: conversion from 'hssize_t' {aka 'long long int'} to 'size_t' {aka 'unsigned int'} may change value [-Wconversion] hdim->widths = malloc(n_points * sizeof(double)); ~~~~~~~~~^~~~~~~~~~~~~~~~ In file included from /usr/include/hdf5/serial/hdf5.h:27, from /<>/libsrc2/volume.c:8: /<>/libsrc2/volume.c: In function 'miopen_volume': /usr/include/hdf5/serial/H5Fpublic.h:50:24: warning: conversion to 'int' from 'unsigned int' may change the sign of the result [-Wsign-conversion] #define H5F_ACC_RDONLY (H5CHECK H5OPEN 0x0000u) /*absence of rdwr => rd-only */ ^ /<>/libsrc2/volume.c:1347:16: note: in expansion of macro 'H5F_ACC_RDONLY' hdf_mode = H5F_ACC_RDONLY; ^~~~~~~~~~~~~~ /usr/include/hdf5/serial/H5Fpublic.h:51:22: warning: conversion to 'int' from 'unsigned int' may change the sign of the result [-Wsign-conversion] #define H5F_ACC_RDWR (H5CHECK H5OPEN 0x0001u) /*open for read and write */ ^ /<>/libsrc2/volume.c:1349:16: note: in expansion of macro 'H5F_ACC_RDWR' hdf_mode = H5F_ACC_RDWR; ^~~~~~~~~~~~ /<>/libsrc2/volume.c:1421:62: warning: conversion to 'unsigned int' from 'int' may change the sign of the result [-Wsign-conversion] handle->dim_handles = (midimhandle_t *)malloc(n_dimensions * ^ In file included from /<>/libcommon/minc2_error.h:38, from /<>/libsrc2/minc2.h:11, from /<>/libsrc2/volume.c:32: /<>/libsrc2/volume.c:1426:56: warning: conversion to 'unsigned int' from 'int' may change the sign of the result [-Wsign-conversion] return MI_LOG_ERROR(MI2_MSG_OUTOFMEM, n_dimensions * sizeof(midimhandle_t)); ^ /<>/libcommon/minc_error.h:187:75: note: in definition of macro 'MI_LOG_ERROR' #define MI_LOG_ERROR(code,...) mi2log_message(__FILE__, __LINE__, code, ##__VA_ARGS__ ) ^~~~~~~~~~~ /<>/libsrc2/volume.c:1509:59: warning: conversion to 'unsigned int' from 'int' may change the sign of the result [-Wsign-conversion] hid_t tmp_id = H5Tget_member_type(handle->ftype_id, i); ^ /<>/libsrc2/volume.c:1510:63: warning: conversion to 'unsigned int' from 'int' may change the sign of the result [-Wsign-conversion] size_t tmp_off = H5Tget_member_offset(handle->ftype_id, i); ^ /<>/libsrc2/volume.c:1511:59: warning: conversion to 'unsigned int' from 'int' may change the sign of the result [-Wsign-conversion] char *tmp_nm = H5Tget_member_name(handle->ftype_id, i); ^ /<>/libsrc2/volume.c: In function 'micreate_volume': /<>/libsrc2/volume.c:99:41: warning: '%s' directive output may be truncated writing up to 127 bytes into a region of size between 0 and 127 [-Wformat-truncation=] result = snprintf(id_str, length, "%s:%s:%s:%u:%u", ^~ /<>/libsrc2/volume.c:101:21: host_str, ~~~~~~~~ /<>/libsrc2/volume.c:99:37: note: using the range [0, 4294967295] for directive argument result = snprintf(id_str, length, "%s:%s:%s:%u:%u", ^~~~~~~~~~~~~~~~ /<>/libsrc2/volume.c:99:37: note: using the range [0, 4294967295] for directive argument In file included from /usr/arm-linux-gnueabi/include/stdio.h:873, from /usr/include/hdf5/serial/H5Epublic.h:20, from /usr/include/hdf5/serial/hdf5.h:26, from /<>/libsrc2/volume.c:8: /usr/arm-linux-gnueabi/include/bits/stdio2.h:67:10: note: '__builtin___snprintf_chk' output between 7 and 304 bytes into a destination of size 128 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 36%] Building C object CMakeFiles/minc2.dir/libcommon/minc2_error.c.o /usr/bin/arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2=1 -D_XOPEN_SOURCE=500 -Dminc2_EXPORTS -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -fPIC -o CMakeFiles/minc2.dir/libcommon/minc2_error.c.o -c /<>/libcommon/minc2_error.c [ 37%] Building C object CMakeFiles/minc2.dir/libcommon/minc_config.c.o /usr/bin/arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2=1 -D_XOPEN_SOURCE=500 -Dminc2_EXPORTS -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -fPIC -o CMakeFiles/minc2.dir/libcommon/minc_config.c.o -c /<>/libcommon/minc_config.c /<>/libcommon/minc_config.c: In function 'miread_cfg': /<>/libcommon/minc_config.c:84:42: warning: conversion to 'size_t' {aka 'unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] strncpy(buffer, tmp, maxlen); ^~~~~~ [ 37%] Building C object CMakeFiles/minc2.dir/libcommon/minc_error.c.o /usr/bin/arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2=1 -D_XOPEN_SOURCE=500 -Dminc2_EXPORTS -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -fPIC -o CMakeFiles/minc2.dir/libcommon/minc_error.c.o -c /<>/libcommon/minc_error.c [ 38%] Building C object CMakeFiles/minc2.dir/libcommon/ParseArgv.c.o /usr/bin/arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2=1 -D_XOPEN_SOURCE=500 -Dminc2_EXPORTS -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -fPIC -o CMakeFiles/minc2.dir/libcommon/ParseArgv.c.o -c /<>/libcommon/ParseArgv.c /<>/libcommon/ParseArgv.c: In function 'PrintUsage': /<>/libcommon/ParseArgv.c:439:32: warning: conversion to 'size_t' {aka 'unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] numSpaces = width + 1 - strlen(infoPtr->key); ^ /<>/libcommon/ParseArgv.c:439:22: warning: conversion to 'int' from 'size_t' {aka 'unsigned int'} may change the sign of the result [-Wsign-conversion] numSpaces = width + 1 - strlen(infoPtr->key); ^~~~~ [ 38%] Building C object CMakeFiles/minc2.dir/libcommon/read_file_names.c.o /usr/bin/arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2=1 -D_XOPEN_SOURCE=500 -Dminc2_EXPORTS -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -fPIC -o CMakeFiles/minc2.dir/libcommon/read_file_names.c.o -c /<>/libcommon/read_file_names.c /<>/libcommon/read_file_names.c: In function 'read_file_names': /<>/libcommon/read_file_names.c:53:34: warning: conversion to 'unsigned int' from 'int' may change the sign of the result [-Wsign-conversion] files = malloc(sizeof(*files) * array_size); ^ /<>/libcommon/read_file_names.c:76:48: warning: conversion to 'unsigned int' from 'int' may change the sign of the result [-Wsign-conversion] files = realloc(files, sizeof(*files) * array_size); ^ [ 39%] Building C object CMakeFiles/minc2.dir/libcommon/restructure.c.o /usr/bin/arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2=1 -D_XOPEN_SOURCE=500 -Dminc2_EXPORTS -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -fPIC -o CMakeFiles/minc2.dir/libcommon/restructure.c.o -c /<>/libcommon/restructure.c /<>/libcommon/restructure.c: In function 'restructure_array': /<>/libcommon/restructure.c:134:21: warning: unsigned conversion from 'int' to 'size_t' {aka 'unsigned int'} changes value from '-1' to '4294967295' [-Wsign-conversion] offset_next = -1; /* Initialize. */ ^ /<>/libcommon/restructure.c:64:40: warning: conversion from 'int' to 'unsigned char' may change value [-Wconversion] #define BIT_SET(bm, i) (bm[(i) / 8] |= (1 << ((i) % 8))) ^ /<>/libcommon/restructure.c:150:7: note: in expansion of macro 'BIT_SET' BIT_SET(bitmap, offset_start); ^~~~~~~ /<>/libcommon/restructure.c:64:40: warning: conversion from 'int' to 'unsigned char' may change value [-Wconversion] #define BIT_SET(bm, i) (bm[(i) / 8] |= (1 << ((i) % 8))) ^ /<>/libcommon/restructure.c:204:11: note: in expansion of macro 'BIT_SET' BIT_SET(bitmap, offset_next); ^~~~~~~ [ 39%] Building C object CMakeFiles/minc2.dir/libcommon/time_stamp.c.o /usr/bin/arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2=1 -D_XOPEN_SOURCE=500 -Dminc2_EXPORTS -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -fPIC -o CMakeFiles/minc2.dir/libcommon/time_stamp.c.o -c /<>/libcommon/time_stamp.c [ 39%] Building C object CMakeFiles/minc2.dir/libsrc/dim_conversion.c.o /usr/bin/arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2=1 -D_XOPEN_SOURCE=500 -Dminc2_EXPORTS -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -fPIC -o CMakeFiles/minc2.dir/libsrc/dim_conversion.c.o -c /<>/libsrc/dim_conversion.c In file included from /<>/libsrc/minc_private.h:84, from /<>/libsrc/dim_conversion.c:93: /<>/libsrc/dim_conversion.c: In function 'MI_icv_dimconvert': /<>/libsrc/minc_useful.h:115:20: warning: conversion from 'double' to 'unsigned char' may change value [-Wfloat-conversion] #define ROUND( x ) ((x) + ( ((x) >= 0) ? 0.5 : (-0.5) ) ) ^ /<>/libsrc/minc_basic.h:161:37: note: in expansion of macro 'ROUND' *((unsigned char *) ptr) = ROUND(dvalue); \ ^~~~~ /<>/libsrc/dim_conversion.c:726:11: note: in expansion of macro 'MI_FROM_DOUBLE' {MI_FROM_DOUBLE(dvalue, dcp->outtype, dcp->outsign, optr)} ^~~~~~~~~~~~~~ /<>/libsrc/minc_useful.h:115:20: warning: conversion from 'double' to 'signed char' may change value [-Wfloat-conversion] #define ROUND( x ) ((x) + ( ((x) >= 0) ? 0.5 : (-0.5) ) ) ^ /<>/libsrc/minc_basic.h:166:35: note: in expansion of macro 'ROUND' *((signed char *) ptr) = ROUND(dvalue); \ ^~~~~ /<>/libsrc/dim_conversion.c:726:11: note: in expansion of macro 'MI_FROM_DOUBLE' {MI_FROM_DOUBLE(dvalue, dcp->outtype, dcp->outsign, optr)} ^~~~~~~~~~~~~~ /<>/libsrc/minc_useful.h:115:20: warning: conversion from 'double' to 'short unsigned int' may change value [-Wfloat-conversion] #define ROUND( x ) ((x) + ( ((x) >= 0) ? 0.5 : (-0.5) ) ) ^ /<>/libsrc/minc_basic.h:175:38: note: in expansion of macro 'ROUND' *((unsigned short *) ptr) = ROUND(dvalue); \ ^~~~~ /<>/libsrc/dim_conversion.c:726:11: note: in expansion of macro 'MI_FROM_DOUBLE' {MI_FROM_DOUBLE(dvalue, dcp->outtype, dcp->outsign, optr)} ^~~~~~~~~~~~~~ /<>/libsrc/minc_useful.h:115:20: warning: conversion from 'double' to 'short int' may change value [-Wfloat-conversion] #define ROUND( x ) ((x) + ( ((x) >= 0) ? 0.5 : (-0.5) ) ) ^ /<>/libsrc/minc_basic.h:180:36: note: in expansion of macro 'ROUND' *((signed short *) ptr) = ROUND(dvalue); \ ^~~~~ /<>/libsrc/dim_conversion.c:726:11: note: in expansion of macro 'MI_FROM_DOUBLE' {MI_FROM_DOUBLE(dvalue, dcp->outtype, dcp->outsign, optr)} ^~~~~~~~~~~~~~ /<>/libsrc/minc_useful.h:115:20: warning: conversion from 'double' to 'unsigned int' may change value [-Wfloat-conversion] #define ROUND( x ) ((x) + ( ((x) >= 0) ? 0.5 : (-0.5) ) ) ^ /<>/libsrc/minc_basic.h:189:36: note: in expansion of macro 'ROUND' *((unsigned int *) ptr) = ROUND(dvalue); \ ^~~~~ /<>/libsrc/dim_conversion.c:726:11: note: in expansion of macro 'MI_FROM_DOUBLE' {MI_FROM_DOUBLE(dvalue, dcp->outtype, dcp->outsign, optr)} ^~~~~~~~~~~~~~ /<>/libsrc/minc_useful.h:115:20: warning: conversion from 'double' to 'int' may change value [-Wfloat-conversion] #define ROUND( x ) ((x) + ( ((x) >= 0) ? 0.5 : (-0.5) ) ) ^ /<>/libsrc/minc_basic.h:194:34: note: in expansion of macro 'ROUND' *((signed int *) ptr) = ROUND(dvalue); \ ^~~~~ /<>/libsrc/dim_conversion.c:726:11: note: in expansion of macro 'MI_FROM_DOUBLE' {MI_FROM_DOUBLE(dvalue, dcp->outtype, dcp->outsign, optr)} ^~~~~~~~~~~~~~ /<>/libsrc/minc_useful.h:123:23: warning: conversion from 'double' to 'float' may change value [-Wfloat-conversion] #define MIN( x, y ) ( ((x) <= (y)) ? (x) : (y) ) ^ /<>/libsrc/minc_basic.h:200:26: note: in expansion of macro 'MIN' *((float *) ptr) = MIN(FLT_MAX,dvalue); \ ^~~ /<>/libsrc/dim_conversion.c:726:11: note: in expansion of macro 'MI_FROM_DOUBLE' {MI_FROM_DOUBLE(dvalue, dcp->outtype, dcp->outsign, optr)} ^~~~~~~~~~~~~~ /<>/libsrc/minc_useful.h:115:20: warning: conversion from 'double' to 'unsigned char' may change value [-Wfloat-conversion] #define ROUND( x ) ((x) + ( ((x) >= 0) ? 0.5 : (-0.5) ) ) ^ /<>/libsrc/minc_basic.h:161:37: note: in expansion of macro 'ROUND' *((unsigned char *) ptr) = ROUND(dvalue); \ ^~~~~ /<>/libsrc/dim_conversion.c:734:17: note: in expansion of macro 'MI_FROM_DOUBLE' {MI_FROM_DOUBLE(dvalue, dcp->outtype, dcp->outsign, ptr)} ^~~~~~~~~~~~~~ /<>/libsrc/minc_useful.h:115:20: warning: conversion from 'double' to 'signed char' may change value [-Wfloat-conversion] #define ROUND( x ) ((x) + ( ((x) >= 0) ? 0.5 : (-0.5) ) ) ^ /<>/libsrc/minc_basic.h:166:35: note: in expansion of macro 'ROUND' *((signed char *) ptr) = ROUND(dvalue); \ ^~~~~ /<>/libsrc/dim_conversion.c:734:17: note: in expansion of macro 'MI_FROM_DOUBLE' {MI_FROM_DOUBLE(dvalue, dcp->outtype, dcp->outsign, ptr)} ^~~~~~~~~~~~~~ /<>/libsrc/minc_useful.h:115:20: warning: conversion from 'double' to 'short unsigned int' may change value [-Wfloat-conversion] #define ROUND( x ) ((x) + ( ((x) >= 0) ? 0.5 : (-0.5) ) ) ^ /<>/libsrc/minc_basic.h:175:38: note: in expansion of macro 'ROUND' *((unsigned short *) ptr) = ROUND(dvalue); \ ^~~~~ /<>/libsrc/dim_conversion.c:734:17: note: in expansion of macro 'MI_FROM_DOUBLE' {MI_FROM_DOUBLE(dvalue, dcp->outtype, dcp->outsign, ptr)} ^~~~~~~~~~~~~~ /<>/libsrc/minc_useful.h:115:20: warning: conversion from 'double' to 'short int' may change value [-Wfloat-conversion] #define ROUND( x ) ((x) + ( ((x) >= 0) ? 0.5 : (-0.5) ) ) ^ /<>/libsrc/minc_basic.h:180:36: note: in expansion of macro 'ROUND' *((signed short *) ptr) = ROUND(dvalue); \ ^~~~~ /<>/libsrc/dim_conversion.c:734:17: note: in expansion of macro 'MI_FROM_DOUBLE' {MI_FROM_DOUBLE(dvalue, dcp->outtype, dcp->outsign, ptr)} ^~~~~~~~~~~~~~ /<>/libsrc/minc_useful.h:115:20: warning: conversion from 'double' to 'unsigned int' may change value [-Wfloat-conversion] #define ROUND( x ) ((x) + ( ((x) >= 0) ? 0.5 : (-0.5) ) ) ^ /<>/libsrc/minc_basic.h:189:36: note: in expansion of macro 'ROUND' *((unsigned int *) ptr) = ROUND(dvalue); \ ^~~~~ /<>/libsrc/dim_conversion.c:734:17: note: in expansion of macro 'MI_FROM_DOUBLE' {MI_FROM_DOUBLE(dvalue, dcp->outtype, dcp->outsign, ptr)} ^~~~~~~~~~~~~~ /<>/libsrc/minc_useful.h:115:20: warning: conversion from 'double' to 'int' may change value [-Wfloat-conversion] #define ROUND( x ) ((x) + ( ((x) >= 0) ? 0.5 : (-0.5) ) ) ^ /<>/libsrc/minc_basic.h:194:34: note: in expansion of macro 'ROUND' *((signed int *) ptr) = ROUND(dvalue); \ ^~~~~ /<>/libsrc/dim_conversion.c:734:17: note: in expansion of macro 'MI_FROM_DOUBLE' {MI_FROM_DOUBLE(dvalue, dcp->outtype, dcp->outsign, ptr)} ^~~~~~~~~~~~~~ /<>/libsrc/minc_useful.h:123:23: warning: conversion from 'double' to 'float' may change value [-Wfloat-conversion] #define MIN( x, y ) ( ((x) <= (y)) ? (x) : (y) ) ^ /<>/libsrc/minc_basic.h:200:26: note: in expansion of macro 'MIN' *((float *) ptr) = MIN(FLT_MAX,dvalue); \ ^~~ /<>/libsrc/dim_conversion.c:734:17: note: in expansion of macro 'MI_FROM_DOUBLE' {MI_FROM_DOUBLE(dvalue, dcp->outtype, dcp->outsign, ptr)} ^~~~~~~~~~~~~~ [ 40%] Building C object CMakeFiles/minc2.dir/libsrc/image_conversion.c.o /usr/bin/arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2=1 -D_XOPEN_SOURCE=500 -Dminc2_EXPORTS -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -fPIC -o CMakeFiles/minc2.dir/libsrc/image_conversion.c.o -c /<>/libsrc/image_conversion.c /<>/libsrc/image_conversion.c: In function 'miicv_setdbl': /<>/libsrc/image_conversion.c:399:29: warning: conversion from 'double' to 'int' may change value [-Wfloat-conversion] icvp->user_do_range = value; ^~~~~ /<>/libsrc/image_conversion.c:408:28: warning: conversion from 'double' to 'int' may change value [-Wfloat-conversion] icvp->user_do_norm = value; ^~~~~ /<>/libsrc/image_conversion.c:411:30: warning: conversion from 'double' to 'int' may change value [-Wfloat-conversion] icvp->user_user_norm = value; ^~~~~ /<>/libsrc/image_conversion.c:420:33: warning: conversion from 'double' to 'int' may change value [-Wfloat-conversion] icvp->user_do_fillvalue = value; ^~~~~ /<>/libsrc/image_conversion.c:426:31: warning: conversion from 'double' to 'int' may change value [-Wfloat-conversion] icvp->user_do_dimconv = value; ^~~~~ /<>/libsrc/image_conversion.c:429:30: warning: conversion from 'double' to 'int' may change value [-Wfloat-conversion] icvp->user_do_scalar = value; ^~~~~ /<>/libsrc/image_conversion.c:432:14: warning: conversion from 'double' to 'int' may change value [-Wfloat-conversion] ival = value; ^~~~~ /<>/libsrc/image_conversion.c:437:14: warning: conversion from 'double' to 'int' may change value [-Wfloat-conversion] ival = value; ^~~~~ /<>/libsrc/image_conversion.c:442:14: warning: conversion from 'double' to 'int' may change value [-Wfloat-conversion] ival = value; ^~~~~ /<>/libsrc/image_conversion.c:447:14: warning: conversion from 'double' to 'int' may change value [-Wfloat-conversion] ival = value; ^~~~~ /<>/libsrc/image_conversion.c:455:32: warning: conversion from 'double' to 'long int' may change value [-Wfloat-conversion] icvp->user_dim_size[0] = value; ^~~~~ /<>/libsrc/image_conversion.c:458:32: warning: conversion from 'double' to 'long int' may change value [-Wfloat-conversion] icvp->user_dim_size[1] = value; ^~~~~ /<>/libsrc/image_conversion.c:461:32: warning: conversion from 'double' to 'int' may change value [-Wfloat-conversion] icvp->user_keep_aspect = value; ^~~~~ /<>/libsrc/image_conversion.c:475:38: warning: conversion from 'double' to 'long int' may change value [-Wfloat-conversion] icvp->user_dim_size[idim] = value; ^~~~~ /<>/libsrc/image_conversion.c: In function 'miicv_inqint': /<>/libsrc/image_conversion.c:774:13: warning: conversion from 'double' to 'int' may change value [-Wfloat-conversion] *value = dvalue; ^~~~~~ /<>/libsrc/image_conversion.c: In function 'miicv_inqlong': /<>/libsrc/image_conversion.c:803:13: warning: conversion from 'double' to 'long int' may change value [-Wfloat-conversion] *value = dvalue; ^~~~~~ In file included from /<>/libsrc/minc_private.h:84, from /<>/libsrc/image_conversion.c:173: /<>/libsrc/image_conversion.c: In function 'MI_icv_zero_buffer': /<>/libsrc/minc_useful.h:115:20: warning: conversion from 'double' to 'unsigned char' may change value [-Wfloat-conversion] #define ROUND( x ) ((x) + ( ((x) >= 0) ? 0.5 : (-0.5) ) ) ^ /<>/libsrc/minc_basic.h:161:37: note: in expansion of macro 'ROUND' *((unsigned char *) ptr) = ROUND(dvalue); \ ^~~~~ /<>/libsrc/image_conversion.c:1490:5: note: in expansion of macro 'MI_FROM_DOUBLE' {MI_FROM_DOUBLE(zeroval, icvp->user_type, icvp->user_sign, zerostart)} ^~~~~~~~~~~~~~ /<>/libsrc/minc_useful.h:115:20: warning: conversion from 'double' to 'signed char' may change value [-Wfloat-conversion] #define ROUND( x ) ((x) + ( ((x) >= 0) ? 0.5 : (-0.5) ) ) ^ /<>/libsrc/minc_basic.h:166:35: note: in expansion of macro 'ROUND' *((signed char *) ptr) = ROUND(dvalue); \ ^~~~~ /<>/libsrc/image_conversion.c:1490:5: note: in expansion of macro 'MI_FROM_DOUBLE' {MI_FROM_DOUBLE(zeroval, icvp->user_type, icvp->user_sign, zerostart)} ^~~~~~~~~~~~~~ /<>/libsrc/minc_useful.h:115:20: warning: conversion from 'double' to 'short unsigned int' may change value [-Wfloat-conversion] #define ROUND( x ) ((x) + ( ((x) >= 0) ? 0.5 : (-0.5) ) ) ^ /<>/libsrc/minc_basic.h:175:38: note: in expansion of macro 'ROUND' *((unsigned short *) ptr) = ROUND(dvalue); \ ^~~~~ /<>/libsrc/image_conversion.c:1490:5: note: in expansion of macro 'MI_FROM_DOUBLE' {MI_FROM_DOUBLE(zeroval, icvp->user_type, icvp->user_sign, zerostart)} ^~~~~~~~~~~~~~ /<>/libsrc/minc_useful.h:115:20: warning: conversion from 'double' to 'short int' may change value [-Wfloat-conversion] #define ROUND( x ) ((x) + ( ((x) >= 0) ? 0.5 : (-0.5) ) ) ^ /<>/libsrc/minc_basic.h:180:36: note: in expansion of macro 'ROUND' *((signed short *) ptr) = ROUND(dvalue); \ ^~~~~ /<>/libsrc/image_conversion.c:1490:5: note: in expansion of macro 'MI_FROM_DOUBLE' {MI_FROM_DOUBLE(zeroval, icvp->user_type, icvp->user_sign, zerostart)} ^~~~~~~~~~~~~~ /<>/libsrc/minc_useful.h:115:20: warning: conversion from 'double' to 'unsigned int' may change value [-Wfloat-conversion] #define ROUND( x ) ((x) + ( ((x) >= 0) ? 0.5 : (-0.5) ) ) ^ /<>/libsrc/minc_basic.h:189:36: note: in expansion of macro 'ROUND' *((unsigned int *) ptr) = ROUND(dvalue); \ ^~~~~ /<>/libsrc/image_conversion.c:1490:5: note: in expansion of macro 'MI_FROM_DOUBLE' {MI_FROM_DOUBLE(zeroval, icvp->user_type, icvp->user_sign, zerostart)} ^~~~~~~~~~~~~~ /<>/libsrc/minc_useful.h:115:20: warning: conversion from 'double' to 'int' may change value [-Wfloat-conversion] #define ROUND( x ) ((x) + ( ((x) >= 0) ? 0.5 : (-0.5) ) ) ^ /<>/libsrc/minc_basic.h:194:34: note: in expansion of macro 'ROUND' *((signed int *) ptr) = ROUND(dvalue); \ ^~~~~ /<>/libsrc/image_conversion.c:1490:5: note: in expansion of macro 'MI_FROM_DOUBLE' {MI_FROM_DOUBLE(zeroval, icvp->user_type, icvp->user_sign, zerostart)} ^~~~~~~~~~~~~~ /<>/libsrc/minc_useful.h:123:23: warning: conversion from 'double' to 'float' may change value [-Wfloat-conversion] #define MIN( x, y ) ( ((x) <= (y)) ? (x) : (y) ) ^ /<>/libsrc/minc_basic.h:200:26: note: in expansion of macro 'MIN' *((float *) ptr) = MIN(FLT_MAX,dvalue); \ ^~~ /<>/libsrc/image_conversion.c:1490:5: note: in expansion of macro 'MI_FROM_DOUBLE' {MI_FROM_DOUBLE(zeroval, icvp->user_type, icvp->user_sign, zerostart)} ^~~~~~~~~~~~~~ [ 40%] Building C object CMakeFiles/minc2.dir/libsrc/minc_convenience.c.o /usr/bin/arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2=1 -D_XOPEN_SOURCE=500 -Dminc2_EXPORTS -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -fPIC -o CMakeFiles/minc2.dir/libsrc/minc_convenience.c.o -c /<>/libsrc/minc_convenience.c /<>/libsrc/minc_convenience.c: In function 'miset_valid_range': /<>/libsrc/minc_convenience.c:430:17: warning: conversion from 'double' to 'float' may change value [-Wfloat-conversion] fval[0] = valid_range[0]; ^~~~~~~~~~~ /<>/libsrc/minc_convenience.c:431:17: warning: conversion from 'double' to 'float' may change value [-Wfloat-conversion] fval[1] = valid_range[1]; ^~~~~~~~~~~ /<>/libsrc/minc_convenience.c: In function 'miattput_pointer': /<>/libsrc/minc_convenience.c:638:10: warning: conversion to 'int' from 'size_t' {aka 'unsigned int'} may change the sign of the result [-Wsign-conversion] index=strlen(strcpy(pointer_string,MI_VARATT_POINTER_PREFIX)); ^~~~~~ In file included from /<>/libsrc/minc_private.h:84, from /<>/libsrc/minc_convenience.c:152: /<>/libsrc/minc_convenience.c: In function 'miadd_child': /<>/libsrc/minc_convenience.c:743:56: warning: conversion to 'size_t' {aka 'unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] if ((child_list = MALLOC(child_list_size+MAX_NC_NAME+ ^ /<>/libsrc/minc_useful.h:138:39: note: in definition of macro 'MALLOC' ( (type *) malloc( (size_t) (n_items) * sizeof(type) ) ) ^~~~~~~ In file included from /<>/libsrc/minc_private.h:89, from /<>/libsrc/minc_convenience.c:152: /<>/libsrc/minc_convenience.c:746:49: warning: conversion to 'size_t' {aka 'unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] child_list_size+MAX_NC_NAME+strlen(MI_CHILD_SEPARATOR)); ^ /<>/libcommon/minc_error.h:187:75: note: in definition of macro 'MI_LOG_ERROR' #define MI_LOG_ERROR(code,...) mi2log_message(__FILE__, __LINE__, code, ##__VA_ARGS__ ) ^~~~~~~~~~~ /<>/libsrc/minc_convenience.c:765:23: warning: conversion to 'size_t' {aka 'unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] child_list_size += strlen(MI_CHILD_SEPARATOR); ^~ /<>/libsrc/minc_convenience.c:765:26: warning: conversion to 'int' from 'size_t' {aka 'unsigned int'} may change the sign of the result [-Wsign-conversion] child_list_size += strlen(MI_CHILD_SEPARATOR); ^~~~~~ /<>/libsrc/minc_convenience.c:780:23: warning: conversion to 'size_t' {aka 'unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] child_list_size -= strlen(MI_CHILD_SEPARATOR); ^~ /<>/libsrc/minc_convenience.c:780:26: warning: conversion to 'int' from 'size_t' {aka 'unsigned int'} may change the sign of the result [-Wsign-conversion] child_list_size -= strlen(MI_CHILD_SEPARATOR); ^~~~~~ /<>/libsrc/minc_convenience.c: In function 'miappend_history': /<>/libsrc/minc_convenience.c:1378:30: warning: conversion to 'size_t' {aka 'unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] att_val = malloc(att_len + strlen(tm_stamp) + 2); ^ [ 41%] Building C object CMakeFiles/minc2.dir/libsrc/nd_loop.c.o /usr/bin/arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2=1 -D_XOPEN_SOURCE=500 -Dminc2_EXPORTS -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -fPIC -o CMakeFiles/minc2.dir/libsrc/nd_loop.c.o -c /<>/libsrc/nd_loop.c [ 41%] Building C object CMakeFiles/minc2.dir/libsrc/netcdf_convenience.c.o /usr/bin/arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2=1 -D_XOPEN_SOURCE=500 -Dminc2_EXPORTS -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -fPIC -o CMakeFiles/minc2.dir/libsrc/netcdf_convenience.c.o -c /<>/libsrc/netcdf_convenience.c In file included from /<>/libsrc/minc_private.h:84, from /<>/libsrc/netcdf_convenience.c:182: /<>/libsrc/netcdf_convenience.c: In function 'miexpand_file': /<>/libsrc/netcdf_convenience.c:380:38: warning: conversion to 'size_t' {aka 'unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] compfile = MALLOC(strlen(path) + max_compression_code_length + 2, char); ^ /<>/libsrc/minc_useful.h:138:39: note: in definition of macro 'MALLOC' ( (type *) malloc( (size_t) (n_items) * sizeof(type) ) ) ^~~~~~~ In file included from /usr/include/hdf5/serial/hdf5.h:27, from /<>/libsrc/minc.h:170, from /<>/libsrc/minc_private.h:83, from /<>/libsrc/netcdf_convenience.c:182: /<>/libsrc/netcdf_convenience.c: In function 'miopen': /usr/include/hdf5/serial/H5Fpublic.h:51:22: warning: conversion to 'int' from 'unsigned int' may change the sign of the result [-Wsign-conversion] #define H5F_ACC_RDWR (H5CHECK H5OPEN 0x0001u) /*open for read and write */ ^ /<>/libsrc/netcdf_convenience.c:517:14: note: in expansion of macro 'H5F_ACC_RDWR' hmode = H5F_ACC_RDWR; ^~~~~~~~~~~~ /usr/include/hdf5/serial/H5Fpublic.h:50:24: warning: conversion to 'int' from 'unsigned int' may change the sign of the result [-Wsign-conversion] #define H5F_ACC_RDONLY (H5CHECK H5OPEN 0x0000u) /*absence of rdwr => rd-only */ ^ /<>/libsrc/netcdf_convenience.c:520:14: note: in expansion of macro 'H5F_ACC_RDONLY' hmode = H5F_ACC_RDONLY; ^~~~~~~~~~~~~~ /<>/libsrc/netcdf_convenience.c: In function 'miattputstr': /<>/libsrc/netcdf_convenience.c:1033:38: warning: conversion to 'int' from 'size_t' {aka 'unsigned int'} may change the sign of the result [-Wsign-conversion] strlen(value) + 1, value); ~~~~~~~~~~~~~~^~~ [ 42%] Building C object CMakeFiles/minc2.dir/libsrc/value_conversion.c.o /usr/bin/arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2=1 -D_XOPEN_SOURCE=500 -Dminc2_EXPORTS -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -fPIC -o CMakeFiles/minc2.dir/libsrc/value_conversion.c.o -c /<>/libsrc/value_conversion.c /<>/libsrc/value_conversion.c: In function 'MI_convert_type': /<>/libsrc/value_conversion.c:622:49: warning: conversion to 'unsigned int' from 'int' may change the sign of the result [-Wsign-conversion] (size_t) number_of_values*inincr); ^ In file included from /<>/libsrc/minc_private.h:84, from /<>/libsrc/value_conversion.c:98: /<>/libsrc/minc_useful.h:115:20: warning: conversion from 'double' to 'unsigned char' may change value [-Wfloat-conversion] #define ROUND( x ) ((x) + ( ((x) >= 0) ? 0.5 : (-0.5) ) ) ^ /<>/libsrc/minc_basic.h:161:37: note: in expansion of macro 'ROUND' *((unsigned char *) ptr) = ROUND(dvalue); \ ^~~~~ /<>/libsrc/value_conversion.c:645:11: note: in expansion of macro 'MI_FROM_DOUBLE' {MI_FROM_DOUBLE(dvalue, outtype, outsgn, outptr)} ^~~~~~~~~~~~~~ /<>/libsrc/minc_useful.h:115:20: warning: conversion from 'double' to 'signed char' may change value [-Wfloat-conversion] #define ROUND( x ) ((x) + ( ((x) >= 0) ? 0.5 : (-0.5) ) ) ^ /<>/libsrc/minc_basic.h:166:35: note: in expansion of macro 'ROUND' *((signed char *) ptr) = ROUND(dvalue); \ ^~~~~ /<>/libsrc/value_conversion.c:645:11: note: in expansion of macro 'MI_FROM_DOUBLE' {MI_FROM_DOUBLE(dvalue, outtype, outsgn, outptr)} ^~~~~~~~~~~~~~ /<>/libsrc/minc_useful.h:115:20: warning: conversion from 'double' to 'short unsigned int' may change value [-Wfloat-conversion] #define ROUND( x ) ((x) + ( ((x) >= 0) ? 0.5 : (-0.5) ) ) ^ /<>/libsrc/minc_basic.h:175:38: note: in expansion of macro 'ROUND' *((unsigned short *) ptr) = ROUND(dvalue); \ ^~~~~ /<>/libsrc/value_conversion.c:645:11: note: in expansion of macro 'MI_FROM_DOUBLE' {MI_FROM_DOUBLE(dvalue, outtype, outsgn, outptr)} ^~~~~~~~~~~~~~ /<>/libsrc/minc_useful.h:115:20: warning: conversion from 'double' to 'short int' may change value [-Wfloat-conversion] #define ROUND( x ) ((x) + ( ((x) >= 0) ? 0.5 : (-0.5) ) ) ^ /<>/libsrc/minc_basic.h:180:36: note: in expansion of macro 'ROUND' *((signed short *) ptr) = ROUND(dvalue); \ ^~~~~ /<>/libsrc/value_conversion.c:645:11: note: in expansion of macro 'MI_FROM_DOUBLE' {MI_FROM_DOUBLE(dvalue, outtype, outsgn, outptr)} ^~~~~~~~~~~~~~ /<>/libsrc/minc_useful.h:115:20: warning: conversion from 'double' to 'unsigned int' may change value [-Wfloat-conversion] #define ROUND( x ) ((x) + ( ((x) >= 0) ? 0.5 : (-0.5) ) ) ^ /<>/libsrc/minc_basic.h:189:36: note: in expansion of macro 'ROUND' *((unsigned int *) ptr) = ROUND(dvalue); \ ^~~~~ /<>/libsrc/value_conversion.c:645:11: note: in expansion of macro 'MI_FROM_DOUBLE' {MI_FROM_DOUBLE(dvalue, outtype, outsgn, outptr)} ^~~~~~~~~~~~~~ /<>/libsrc/minc_useful.h:115:20: warning: conversion from 'double' to 'int' may change value [-Wfloat-conversion] #define ROUND( x ) ((x) + ( ((x) >= 0) ? 0.5 : (-0.5) ) ) ^ /<>/libsrc/minc_basic.h:194:34: note: in expansion of macro 'ROUND' *((signed int *) ptr) = ROUND(dvalue); \ ^~~~~ /<>/libsrc/value_conversion.c:645:11: note: in expansion of macro 'MI_FROM_DOUBLE' {MI_FROM_DOUBLE(dvalue, outtype, outsgn, outptr)} ^~~~~~~~~~~~~~ /<>/libsrc/minc_useful.h:123:23: warning: conversion from 'double' to 'float' may change value [-Wfloat-conversion] #define MIN( x, y ) ( ((x) <= (y)) ? (x) : (y) ) ^ /<>/libsrc/minc_basic.h:200:26: note: in expansion of macro 'MIN' *((float *) ptr) = MIN(FLT_MAX,dvalue); \ ^~~ /<>/libsrc/value_conversion.c:645:11: note: in expansion of macro 'MI_FROM_DOUBLE' {MI_FROM_DOUBLE(dvalue, outtype, outsgn, outptr)} ^~~~~~~~~~~~~~ [ 42%] Building C object CMakeFiles/minc2.dir/libsrc/voxel_loop.c.o /usr/bin/arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2=1 -D_XOPEN_SOURCE=500 -Dminc2_EXPORTS -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -fPIC -o CMakeFiles/minc2.dir/libsrc/voxel_loop.c.o -c /<>/libsrc/voxel_loop.c /<>/libsrc/voxel_loop.c: In function 'update_history': /<>/libsrc/voxel_loop.c:1182:15: warning: conversion to 'size_t' {aka 'unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] att_length += strlen(arg_string) + 1; ^~ /<>/libsrc/voxel_loop.c:1182:18: warning: conversion to 'int' from 'size_t' {aka 'unsigned int'} may change the sign of the result [-Wsign-conversion] att_length += strlen(arg_string) + 1; ^~~~~~ [ 43%] Building C object CMakeFiles/minc2.dir/libsrc/hdf_convenience.c.o /usr/bin/arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2=1 -D_XOPEN_SOURCE=500 -Dminc2_EXPORTS -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -fPIC -o CMakeFiles/minc2.dir/libsrc/hdf_convenience.c.o -c /<>/libsrc/hdf_convenience.c /<>/libsrc/hdf_convenience.c: In function 'hdf_var_add': /<>/libsrc/hdf_convenience.c:202:59: warning: conversion to 'unsigned int' from 'int' may change the sign of the result [-Wsign-conversion] new->dims = (hsize_t *) malloc(sizeof (hsize_t) * ndims); ^ In file included from /<>/libsrc/minc_private.h:89, from /<>/libsrc/hdf_convenience.c:8: /<>/libsrc/hdf_convenience.c:209:59: warning: conversion to 'unsigned int' from 'int' may change the sign of the result [-Wsign-conversion] MI_LOG_ERROR(MI_MSG_OUTOFMEM, sizeof(hsize_t) * ndims); ^ /<>/libcommon/minc_error.h:187:75: note: in definition of macro 'MI_LOG_ERROR' #define MI_LOG_ERROR(code,...) mi2log_message(__FILE__, __LINE__, code, ##__VA_ARGS__ ) ^~~~~~~~~~~ /<>/libsrc/hdf_convenience.c: In function 'hdf_size': /<>/libsrc/hdf_convenience.c:370:20: warning: conversion to 'int' from 'size_t' {aka 'unsigned int'} may change the sign of the result [-Wsign-conversion] int typ_size = H5Tget_size(typ_id); ^~~~~~~~~~~ /<>/libsrc/hdf_convenience.c:371:20: warning: conversion from 'hssize_t' {aka 'long long int'} to 'int' may change value [-Wconversion] int spc_size = H5Sget_simple_extent_npoints(spc_id); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/libsrc/hdf_convenience.c: In function 'hdf_attname': /<>/libsrc/hdf_convenience.c:455:38: warning: conversion to 'unsigned int' from 'int' may change the sign of the result [-Wsign-conversion] att_id = H5Aopen_idx(loc_id, attnum); ^~~~~~ /<>/libsrc/hdf_convenience.c: In function 'hdf_attinq': /<>/libsrc/hdf_convenience.c:578:25: warning: conversion to 'int' from 'size_t' {aka 'unsigned int'} may change the sign of the result [-Wsign-conversion] *length_ptr = typ_size; ^~~~~~~~ /<>/libsrc/hdf_convenience.c:581:25: warning: conversion from 'hssize_t' {aka 'long long int'} to 'int' may change value [-Wconversion] *length_ptr = H5Sget_simple_extent_npoints(spc_id); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/libsrc/hdf_convenience.c: In function 'hdf_get_dimorder': /<>/libsrc/hdf_convenience.c:667:14: warning: conversion to 'int' from 'size_t' {aka 'unsigned int'} may change the sign of the result [-Wsign-conversion] length = H5Tget_size(typ_id); ^~~~~~~~~~~ /<>/libsrc/hdf_convenience.c: In function 'hdf_dimdef': /<>/libsrc/hdf_convenience.c:958:49: warning: conversion to 'long unsigned int' from 'long int' may change the sign of the result [-Wsign-conversion] hdf_set_length(var->dset_id, dimnm, length); ^~~~~~ /<>/libsrc/hdf_convenience.c: In function 'hdf_attput': /<>/libsrc/hdf_convenience.c:1147:30: warning: conversion to 'size_t' {aka 'unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] H5Tset_size(ftyp_id, val_len); ^~~~~~~ /<>/libsrc/hdf_convenience.c:1185:33: warning: conversion to 'hsize_t' {aka 'long long unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] hsize_t temp_size = val_len; ^~~~~~~ /<>/libsrc/hdf_convenience.c: In function 'hdf_vardef': /<>/libsrc/hdf_convenience.c:1322:19: warning: conversion to 'hsize_t' {aka 'long long unsigned int'} from 'long int' may change the sign of the result [-Wsign-conversion] dims[i] = length; ^~~~~~ /<>/libsrc/hdf_convenience.c:1369:60: warning: conversion to 'hsize_t' {aka 'long long unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] if( MI_MAX_VAR_BUFFER_SIZE > dims[i] * val * unit_size ) { ^ In file included from /<>/libsrc/minc_private.h:84, from /<>/libsrc/hdf_convenience.c:8: /<>/libsrc/hdf_convenience.c:1373:81: warning: conversion to 'hsize_t' {aka 'long long unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] (hsize_t)( MI_MAX_VAR_BUFFER_SIZE / ( val * unit_size ) ) ); ^ /<>/libsrc/minc_useful.h:123:34: note: in definition of macro 'MIN' #define MIN( x, y ) ( ((x) <= (y)) ? (x) : (y) ) ^ /<>/libsrc/hdf_convenience.c:1373:81: warning: conversion to 'hsize_t' {aka 'long long unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] (hsize_t)( MI_MAX_VAR_BUFFER_SIZE / ( val * unit_size ) ) ); ^ /<>/libsrc/minc_useful.h:123:47: note: in definition of macro 'MIN' #define MIN( x, y ) ( ((x) <= (y)) ? (x) : (y) ) ^ /<>/libsrc/hdf_convenience.c:1381:38: warning: conversion to 'hsize_t' {aka 'long long unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] chkdims[i] = chunk_length; ^~~~~~~~~~~~ /<>/libsrc/hdf_convenience.c:1386:36: warning: conversion to 'unsigned int' from 'int' may change the sign of the result [-Wsign-conversion] H5Pset_deflate(prp_id, comp_level); ^~~~~~~~~~ /<>/libsrc/hdf_convenience.c:1418:42: warning: conversion to 'long unsigned int' from 'long int' may change the sign of the result [-Wsign-conversion] hdf_set_length(dst_id, varnm, dim->length); ~~~^~~~~~~~ /<>/libsrc/hdf_convenience.c: In function 'hdf_varget': /<>/libsrc/hdf_convenience.c:1534:19: warning: conversion to 'hsize_t' {aka 'long long unsigned int'} from 'long int' may change the sign of the result [-Wsign-conversion] fstart[i] = start_ptr[i]; ^~~~~~~~~ /<>/libsrc/hdf_convenience.c:1535:18: warning: conversion to 'hsize_t' {aka 'long long unsigned int'} from 'long int' may change the sign of the result [-Wsign-conversion] count[i] = length_ptr[i]; ^~~~~~~~~~ /<>/libsrc/hdf_convenience.c: In function 'hdf_varputg': /<>/libsrc/hdf_convenience.c:1633:45: warning: conversion to 'size_t' {aka 'unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] mystart = (hsize_t *)calloc(varp->ndims * 7, sizeof(hsize_t)); ~~~~~~~~~~~~^~~ /<>/libsrc/hdf_convenience.c:1649:18: warning: conversion to 'hsize_t' {aka 'long long unsigned int'} from 'long int' may change the sign of the result [-Wsign-conversion] mystart[idim] = start != NULL ? start[idim] : 0; ^~~~~ /<>/libsrc/hdf_convenience.c:1658:22: warning: conversion to 'hsize_t' {aka 'long long unsigned int'} from 'long int' may change the sign of the result [-Wsign-conversion] myedges[idim] = edges[idim]; ^~~~~ /<>/libsrc/hdf_convenience.c:1682:29: warning: conversion to 'hsize_t' {aka 'long long unsigned int'} from 'ptrdiff_t' {aka 'int'} may change the sign of the result [-Wsign-conversion] length[idim] = mymap[idim] * myedges[idim]; ^ /<>/libsrc/hdf_convenience.c:1683:45: warning: conversion to 'hsize_t' {aka 'long long unsigned int'} from 'ptrdiff_t' {aka 'int'} may change the sign of the result [-Wsign-conversion] stop[idim] = mystart[idim] + myedges[idim] * mystride[idim]; ^ /<>/libsrc/hdf_convenience.c:1740:16: warning: conversion to 'hsize_t' {aka 'long long unsigned int'} from 'ptrdiff_t' {aka 'int'} may change the sign of the result [-Wsign-conversion] mystart[idim] += mystride[idim]; ^~ /<>/libsrc/hdf_convenience.c:1742:22: warning: conversion to 'hsize_t' {aka 'long long unsigned int'} from 'long int' may change the sign of the result [-Wsign-conversion] mystart[idim] = start[idim]; ^~~~~ /<>/libsrc/hdf_convenience.c: In function 'hdf_vargetg': /<>/libsrc/hdf_convenience.c:1810:42: warning: conversion to 'size_t' {aka 'unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] mystart = (long *)calloc(varp->ndims * 7, sizeof(long)); ~~~~~~~~~~~~^~~ /<>/libsrc/hdf_convenience.c:1837:39: warning: conversion to 'hsize_t' {aka 'long long unsigned int'} from 'long int' may change the sign of the result [-Wsign-conversion] myedges[idim] = varp->dims[idim] - mystart[idim]; ^ /<>/libsrc/hdf_convenience.c:1837:22: warning: conversion from 'hsize_t' {aka 'long long unsigned int'} to 'long int' may change value [-Wconversion] myedges[idim] = varp->dims[idim] - mystart[idim]; ^~~~ /<>/libsrc/hdf_convenience.c: In function 'hdf_varput': /<>/libsrc/hdf_convenience.c:1957:19: warning: conversion to 'hsize_t' {aka 'long long unsigned int'} from 'long int' may change the sign of the result [-Wsign-conversion] fstart[i] = start_ptr[i]; ^~~~~~~~~ /<>/libsrc/hdf_convenience.c:1958:18: warning: conversion to 'hsize_t' {aka 'long long unsigned int'} from 'long int' may change the sign of the result [-Wsign-conversion] count[i] = length_ptr[i]; ^~~~~~~~~~ /<>/libsrc/hdf_convenience.c: In function 'hdf_varsize': /<>/libsrc/hdf_convenience.c:2069:23: warning: conversion from 'hsize_t' {aka 'long long unsigned int'} to 'long int' may change value [-Wconversion] size_ptr[i] = dims[i]; ^~~~ /<>/libsrc/hdf_convenience.c: In function 'hdf_copy_attr': /<>/libsrc/hdf_convenience.c:2103:26: warning: conversion to 'size_t' {aka 'unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] if ((val_ptr = malloc(hdf_size(spc_id, typ_id))) == NULL) ^~~~~~~~~~~~~~~~~~~~~~~~ /<>/libsrc/hdf_convenience.c: In function 'hdf_open': /<>/libsrc/hdf_convenience.c:2223:117: warning: conversion to 'size_t' {aka 'unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] H5Pset_cache(fpid, 0, 2503, miget_cfg_present(MICFG_MINC_FILE_CACHE)?miget_cfg_int(MICFG_MINC_FILE_CACHE)*100000:MI_MAX_VAR_BUFFER_SIZE*10, 1.0); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/libsrc/hdf_convenience.c:2239:33: warning: conversion to 'unsigned int' from 'int' may change the sign of the result [-Wsign-conversion] file_id = H5Fopen(path, mode, fpid); ^~~~ /<>/libsrc/hdf_convenience.c:2249:25: warning: conversion to 'unsigned int' from 'int' may change the sign of the result [-Wsign-conversion] file->wr_ok = (mode & H5F_ACC_RDWR) != 0; ^ /<>/libsrc/hdf_convenience.c:2271:37: warning: conversion to 'hsize_t' {aka 'long long unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] dims[ndims++] = H5Tget_nmembers(type_id); ^~~~~~~~~~~~~~~ /<>/libsrc/hdf_convenience.c: In function 'hdf_create': /<>/libsrc/hdf_convenience.c:2331:117: warning: conversion to 'size_t' {aka 'unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] H5Pset_cache(fpid, 0, 2503, miget_cfg_present(MICFG_MINC_FILE_CACHE)?miget_cfg_int(MICFG_MINC_FILE_CACHE)*100000:MI_MAX_VAR_BUFFER_SIZE*10, 1.0); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/hdf5/serial/hdf5.h:27, from /<>/libsrc/minc.h:170, from /<>/libsrc/minc_private.h:83, from /<>/libsrc/hdf_convenience.c:8: /usr/include/hdf5/serial/H5Fpublic.h:53:22: warning: conversion to 'int' from 'unsigned int' may change the sign of the result [-Wsign-conversion] #define H5F_ACC_EXCL (H5CHECK H5OPEN 0x0004u) /*fail if file already exists*/ ^ /<>/libsrc/hdf_convenience.c:2337:15: note: in expansion of macro 'H5F_ACC_EXCL' cmode = H5F_ACC_EXCL; ^~~~~~~~~~~~ /usr/include/hdf5/serial/H5Fpublic.h:52:23: warning: conversion to 'int' from 'unsigned int' may change the sign of the result [-Wsign-conversion] #define H5F_ACC_TRUNC (H5CHECK H5OPEN 0x0002u) /*overwrite existing files */ ^ /<>/libsrc/hdf_convenience.c:2340:15: note: in expansion of macro 'H5F_ACC_TRUNC' cmode = H5F_ACC_TRUNC; ^~~~~~~~~~~~~ /<>/libsrc/hdf_convenience.c:2347:35: warning: conversion to 'unsigned int' from 'int' may change the sign of the result [-Wsign-conversion] file_id = H5Fcreate(path, cmode, H5P_DEFAULT, fpid); ^~~~~ [ 43%] Building C object CMakeFiles/minc2.dir/libsrc/minc_compat.c.o /usr/bin/arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2=1 -D_XOPEN_SOURCE=500 -Dminc2_EXPORTS -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -fPIC -o CMakeFiles/minc2.dir/libsrc/minc_compat.c.o -c /<>/libsrc/minc_compat.c /<>/libsrc/minc_compat.c: In function 'MI2attcopy': /<>/libsrc/minc_compat.c:307:51: warning: conversion to 'size_t' {aka 'unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] val_ptr = malloc(MI2typelen(att_type) * att_length); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 43%] Building C object CMakeFiles/minc2.dir/libsrc/minc_simple.c.o /usr/bin/arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2=1 -D_XOPEN_SOURCE=500 -Dminc2_EXPORTS -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -fPIC -o CMakeFiles/minc2.dir/libsrc/minc_simple.c.o -c /<>/libsrc/minc_simple.c /<>/libsrc/minc_simple.c: In function 'minc_load_data': /<>/libsrc/minc_simple.c:393:27: warning: conversion to 'size_t' {aka 'unsigned int'} from 'long int' may change the sign of the result [-Wsign-conversion] ucount[j++] = dim_len[i]; ^~~~~~~ /<>/libsrc/minc_simple.c:397:23: warning: conversion to 'size_t' {aka 'unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] restructure_array(var_ndims, dataptr, ucount, nctypelen(nctype), ^~~~~~~~~ In file included from /<>/libsrc/minc.h:172, from /<>/libsrc/minc_private.h:83, from /<>/libsrc/minc_simple.c:38: /<>/libsrc/minc_compat.h:67:19: warning: conversion to 'size_t' {aka 'unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] #define nctypelen MI2typelen /<>/libsrc/minc_simple.c:397:51: note: in expansion of macro 'nctypelen' restructure_array(var_ndims, dataptr, ucount, nctypelen(nctype), ^~~~~~~~~ /<>/libsrc/minc_simple.c:416:77: warning: conversion to 'unsigned int' from 'int' may change the sign of the result [-Wsign-conversion] p_file->file_atts = (struct att_info *) malloc(sizeof (struct att_info) * ^ /<>/libsrc/minc_simple.c:419:77: warning: conversion to 'unsigned int' from 'int' may change the sign of the result [-Wsign-conversion] p_file->file_vars = (struct var_info *) malloc(sizeof (struct var_info) * ^ /<>/libsrc/minc_simple.c:431:48: warning: conversion to 'size_t' {aka 'unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] p_att->att_val = malloc(p_att->att_len * nctypelen(p_att->att_type)); ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/libsrc/minc_simple.c:446:51: warning: conversion to 'unsigned int' from 'int' may change the sign of the result [-Wsign-conversion] p_var->var_atts = malloc(p_var->var_natts * ^ /<>/libsrc/minc_simple.c:462:52: warning: conversion to 'size_t' {aka 'unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] p_att->att_val = malloc(p_att->att_len * nctypelen(p_att->att_type)); ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 44%] Building C object CMakeFiles/minc2.dir/libsrc/minc_format_convert.c.o /usr/bin/arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2=1 -D_XOPEN_SOURCE=500 -Dminc2_EXPORTS -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -fPIC -o CMakeFiles/minc2.dir/libsrc/minc_format_convert.c.o -c /<>/libsrc/minc_format_convert.c [ 44%] Building C object CMakeFiles/minc2.dir/volume_io/Geometry/colour.c.o /usr/bin/arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2=1 -D_XOPEN_SOURCE=500 -Dminc2_EXPORTS -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -fPIC -o CMakeFiles/minc2.dir/volume_io/Geometry/colour.c.o -c /<>/volume_io/Geometry/colour.c [ 45%] Building C object CMakeFiles/minc2.dir/volume_io/Geometry/colour_def.c.o /usr/bin/arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2=1 -D_XOPEN_SOURCE=500 -Dminc2_EXPORTS -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -fPIC -o CMakeFiles/minc2.dir/volume_io/Geometry/colour_def.c.o -c /<>/volume_io/Geometry/colour_def.c [ 45%] Building C object CMakeFiles/minc2.dir/volume_io/Geometry/gaussian.c.o /usr/bin/arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2=1 -D_XOPEN_SOURCE=500 -Dminc2_EXPORTS -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -fPIC -o CMakeFiles/minc2.dir/volume_io/Geometry/gaussian.c.o -c /<>/volume_io/Geometry/gaussian.c [ 46%] Building C object CMakeFiles/minc2.dir/volume_io/Geometry/inverse.c.o /usr/bin/arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2=1 -D_XOPEN_SOURCE=500 -Dminc2_EXPORTS -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -fPIC -o CMakeFiles/minc2.dir/volume_io/Geometry/inverse.c.o -c /<>/volume_io/Geometry/inverse.c [ 46%] Building C object CMakeFiles/minc2.dir/volume_io/Geometry/newton.c.o /usr/bin/arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2=1 -D_XOPEN_SOURCE=500 -Dminc2_EXPORTS -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -fPIC -o CMakeFiles/minc2.dir/volume_io/Geometry/newton.c.o -c /<>/volume_io/Geometry/newton.c [ 46%] Building C object CMakeFiles/minc2.dir/volume_io/Geometry/points.c.o /usr/bin/arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2=1 -D_XOPEN_SOURCE=500 -Dminc2_EXPORTS -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -fPIC -o CMakeFiles/minc2.dir/volume_io/Geometry/points.c.o -c /<>/volume_io/Geometry/points.c [ 47%] Building C object CMakeFiles/minc2.dir/volume_io/Geometry/splines.c.o /usr/bin/arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2=1 -D_XOPEN_SOURCE=500 -Dminc2_EXPORTS -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -fPIC -o CMakeFiles/minc2.dir/volume_io/Geometry/splines.c.o -c /<>/volume_io/Geometry/splines.c [ 47%] Building C object CMakeFiles/minc2.dir/volume_io/Geometry/tensors.c.o /usr/bin/arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2=1 -D_XOPEN_SOURCE=500 -Dminc2_EXPORTS -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -fPIC -o CMakeFiles/minc2.dir/volume_io/Geometry/tensors.c.o -c /<>/volume_io/Geometry/tensors.c [ 48%] Building C object CMakeFiles/minc2.dir/volume_io/Geometry/transforms.c.o /usr/bin/arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2=1 -D_XOPEN_SOURCE=500 -Dminc2_EXPORTS -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -fPIC -o CMakeFiles/minc2.dir/volume_io/Geometry/transforms.c.o -c /<>/volume_io/Geometry/transforms.c [ 48%] Building C object CMakeFiles/minc2.dir/volume_io/MNI_formats/gen_xf_io.c.o /usr/bin/arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2=1 -D_XOPEN_SOURCE=500 -Dminc2_EXPORTS -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -fPIC -o CMakeFiles/minc2.dir/volume_io/MNI_formats/gen_xf_io.c.o -c /<>/volume_io/MNI_formats/gen_xf_io.c /<>/volume_io/MNI_formats/gen_xf_io.c: In function 'output_one_transform': /<>/volume_io/MNI_formats/gen_xf_io.c:184:74: warning: conversion to 'size_t' {aka 'unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] volume_filename = alloc_string( string_length(prefix_filename) + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 100 ); ~~~ [ 49%] Building C object CMakeFiles/minc2.dir/volume_io/MNI_formats/gen_xfs.c.o /usr/bin/arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2=1 -D_XOPEN_SOURCE=500 -Dminc2_EXPORTS -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -fPIC -o CMakeFiles/minc2.dir/volume_io/MNI_formats/gen_xfs.c.o -c /<>/volume_io/MNI_formats/gen_xfs.c [ 49%] Building C object CMakeFiles/minc2.dir/volume_io/MNI_formats/grid_transforms.c.o /usr/bin/arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2=1 -D_XOPEN_SOURCE=500 -Dminc2_EXPORTS -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -fPIC -o CMakeFiles/minc2.dir/volume_io/MNI_formats/grid_transforms.c.o -c /<>/volume_io/MNI_formats/grid_transforms.c [ 50%] Building C object CMakeFiles/minc2.dir/volume_io/MNI_formats/mni_io.c.o /usr/bin/arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2=1 -D_XOPEN_SOURCE=500 -Dminc2_EXPORTS -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -fPIC -o CMakeFiles/minc2.dir/volume_io/MNI_formats/mni_io.c.o -c /<>/volume_io/MNI_formats/mni_io.c [ 50%] Building C object CMakeFiles/minc2.dir/volume_io/MNI_formats/tag_points.c.o /usr/bin/arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2=1 -D_XOPEN_SOURCE=500 -Dminc2_EXPORTS -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -fPIC -o CMakeFiles/minc2.dir/volume_io/MNI_formats/tag_points.c.o -c /<>/volume_io/MNI_formats/tag_points.c [ 50%] Building C object CMakeFiles/minc2.dir/volume_io/MNI_formats/thin_plate_spline.c.o /usr/bin/arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2=1 -D_XOPEN_SOURCE=500 -Dminc2_EXPORTS -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -fPIC -o CMakeFiles/minc2.dir/volume_io/MNI_formats/thin_plate_spline.c.o -c /<>/volume_io/MNI_formats/thin_plate_spline.c [ 51%] Building C object CMakeFiles/minc2.dir/volume_io/Prog_utils/alloc.c.o /usr/bin/arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2=1 -D_XOPEN_SOURCE=500 -Dminc2_EXPORTS -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -fPIC -o CMakeFiles/minc2.dir/volume_io/Prog_utils/alloc.c.o -c /<>/volume_io/Prog_utils/alloc.c /<>/volume_io/Prog_utils/alloc.c: In function 'alloc_memory_in_bytes': /<>/volume_io/Prog_utils/alloc.c:247:50: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'size_t' {aka 'unsigned int'} [-Wformat=] print_error( "Cannot alloc 1D array of %lu bytes.\n", n_bytes ); ~~^ ~~~~~~~ %u /<>/volume_io/Prog_utils/alloc.c: In function 'alloc_memory_1d': /<>/volume_io/Prog_utils/alloc.c:286:50: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'size_t' {aka 'unsigned int'} [-Wformat=] print_error( "Cannot alloc 1D array of %lu elements of %lu bytes.\n", ~~^ %u n_elements, type_size ); ~~~~~~~~~~ /<>/volume_io/Prog_utils/alloc.c:286:66: warning: format '%lu' expects argument of type 'long unsigned int', but argument 3 has type 'size_t' {aka 'unsigned int'} [-Wformat=] print_error( "Cannot alloc 1D array of %lu elements of %lu bytes.\n", ~~^ %u n_elements, type_size ); ~~~~~~~~~ /<>/volume_io/Prog_utils/alloc.c: In function 'alloc_memory_2d': /<>/volume_io/Prog_utils/alloc.c:329:50: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'size_t' {aka 'unsigned int'} [-Wformat=] print_error( "Cannot alloc 2D array of %lu by %lu elements of %lu bytes.\n", ~~^ %u n1, n2, type_size ); ~~ /<>/volume_io/Prog_utils/alloc.c:329:57: warning: format '%lu' expects argument of type 'long unsigned int', but argument 3 has type 'size_t' {aka 'unsigned int'} [-Wformat=] print_error( "Cannot alloc 2D array of %lu by %lu elements of %lu bytes.\n", ~~^ %u n1, n2, type_size ); ~~ /<>/volume_io/Prog_utils/alloc.c:329:73: warning: format '%lu' expects argument of type 'long unsigned int', but argument 4 has type 'size_t' {aka 'unsigned int'} [-Wformat=] print_error( "Cannot alloc 2D array of %lu by %lu elements of %lu bytes.\n", ~~^ %u n1, n2, type_size ); ~~~~~~~~~ /<>/volume_io/Prog_utils/alloc.c: In function 'alloc_memory_3d': /<>/volume_io/Prog_utils/alloc.c:377:50: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'size_t' {aka 'unsigned int'} [-Wformat=] print_error( "Cannot alloc 3D array of %lu by %lu by %lu elements of %lu bytes.\n", ~~^ %u n1, n2, n3, type_size ); ~~ /<>/volume_io/Prog_utils/alloc.c:377:57: warning: format '%lu' expects argument of type 'long unsigned int', but argument 3 has type 'size_t' {aka 'unsigned int'} [-Wformat=] print_error( "Cannot alloc 3D array of %lu by %lu by %lu elements of %lu bytes.\n", ~~^ %u n1, n2, n3, type_size ); ~~ /<>/volume_io/Prog_utils/alloc.c:377:64: warning: format '%lu' expects argument of type 'long unsigned int', but argument 4 has type 'size_t' {aka 'unsigned int'} [-Wformat=] print_error( "Cannot alloc 3D array of %lu by %lu by %lu elements of %lu bytes.\n", ~~^ %u n1, n2, n3, type_size ); ~~ /<>/volume_io/Prog_utils/alloc.c:377:80: warning: format '%lu' expects argument of type 'long unsigned int', but argument 5 has type 'size_t' {aka 'unsigned int'} [-Wformat=] print_error( "Cannot alloc 3D array of %lu by %lu by %lu elements of %lu bytes.\n", ~~^ %u n1, n2, n3, type_size ); ~~~~~~~~~ /<>/volume_io/Prog_utils/alloc.c: In function 'alloc_memory_4d': /<>/volume_io/Prog_utils/alloc.c:430:50: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'size_t' {aka 'unsigned int'} [-Wformat=] print_error( "Cannot alloc 4D array of %lu by %lu by %lu by %lu elements of %lu bytes.\n", ~~^ %u n1, n2, n3, n4, type_size ); ~~ /<>/volume_io/Prog_utils/alloc.c:430:57: warning: format '%lu' expects argument of type 'long unsigned int', but argument 3 has type 'size_t' {aka 'unsigned int'} [-Wformat=] print_error( "Cannot alloc 4D array of %lu by %lu by %lu by %lu elements of %lu bytes.\n", ~~^ %u n1, n2, n3, n4, type_size ); ~~ /<>/volume_io/Prog_utils/alloc.c:430:64: warning: format '%lu' expects argument of type 'long unsigned int', but argument 4 has type 'size_t' {aka 'unsigned int'} [-Wformat=] print_error( "Cannot alloc 4D array of %lu by %lu by %lu by %lu elements of %lu bytes.\n", ~~^ %u n1, n2, n3, n4, type_size ); ~~ /<>/volume_io/Prog_utils/alloc.c:430:71: warning: format '%lu' expects argument of type 'long unsigned int', but argument 5 has type 'size_t' {aka 'unsigned int'} [-Wformat=] print_error( "Cannot alloc 4D array of %lu by %lu by %lu by %lu elements of %lu bytes.\n", ~~^ %u n1, n2, n3, n4, type_size ); ~~ /<>/volume_io/Prog_utils/alloc.c:430:87: warning: format '%lu' expects argument of type 'long unsigned int', but argument 6 has type 'size_t' {aka 'unsigned int'} [-Wformat=] print_error( "Cannot alloc 4D array of %lu by %lu by %lu by %lu elements of %lu bytes.\n", ~~^ %u n1, n2, n3, n4, type_size ); ~~~~~~~~~ /<>/volume_io/Prog_utils/alloc.c: In function 'alloc_memory_5d': /<>/volume_io/Prog_utils/alloc.c:486:50: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'size_t' {aka 'unsigned int'} [-Wformat=] print_error( "Cannot alloc 4D array of %lu by %lu by %lu by %lu by %lu elements of %lu bytes.\n", ~~^ %u n1, n2, n3, n4, n5, type_size ); ~~ /<>/volume_io/Prog_utils/alloc.c:486:57: warning: format '%lu' expects argument of type 'long unsigned int', but argument 3 has type 'size_t' {aka 'unsigned int'} [-Wformat=] print_error( "Cannot alloc 4D array of %lu by %lu by %lu by %lu by %lu elements of %lu bytes.\n", ~~^ %u n1, n2, n3, n4, n5, type_size ); ~~ /<>/volume_io/Prog_utils/alloc.c:486:64: warning: format '%lu' expects argument of type 'long unsigned int', but argument 4 has type 'size_t' {aka 'unsigned int'} [-Wformat=] print_error( "Cannot alloc 4D array of %lu by %lu by %lu by %lu by %lu elements of %lu bytes.\n", ~~^ %u n1, n2, n3, n4, n5, type_size ); ~~ /<>/volume_io/Prog_utils/alloc.c:486:71: warning: format '%lu' expects argument of type 'long unsigned int', but argument 5 has type 'size_t' {aka 'unsigned int'} [-Wformat=] print_error( "Cannot alloc 4D array of %lu by %lu by %lu by %lu by %lu elements of %lu bytes.\n", ~~^ %u n1, n2, n3, n4, n5, type_size ); ~~ /<>/volume_io/Prog_utils/alloc.c:486:78: warning: format '%lu' expects argument of type 'long unsigned int', but argument 6 has type 'size_t' {aka 'unsigned int'} [-Wformat=] print_error( "Cannot alloc 4D array of %lu by %lu by %lu by %lu by %lu elements of %lu bytes.\n", ~~^ %u n1, n2, n3, n4, n5, type_size ); ~~ /<>/volume_io/Prog_utils/alloc.c:486:94: warning: format '%lu' expects argument of type 'long unsigned int', but argument 7 has type 'size_t' {aka 'unsigned int'} [-Wformat=] print_error( "Cannot alloc 4D array of %lu by %lu by %lu by %lu by %lu elements of %lu bytes.\n", ~~^ %u n1, n2, n3, n4, n5, type_size ); ~~~~~~~~~ /<>/volume_io/Prog_utils/alloc.c: In function 'realloc_memory': /<>/volume_io/Prog_utils/alloc.c:544:46: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'size_t' {aka 'unsigned int'} [-Wformat=] print_error( "Error reallocing %lu elements of size %lu.\n", ~~^ %u n_elements, type_size ); ~~~~~~~~~~ /<>/volume_io/Prog_utils/alloc.c:544:67: warning: format '%lu' expects argument of type 'long unsigned int', but argument 3 has type 'size_t' {aka 'unsigned int'} [-Wformat=] print_error( "Error reallocing %lu elements of size %lu.\n", ~~^ %u n_elements, type_size ); ~~~~~~~~~ /<>/volume_io/Prog_utils/alloc.c:558:76: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'size_t' {aka 'unsigned int'} [-Wformat=] print_error("Error: tried to realloc invalid number of elements, %lu.\n", ~~^ %u n_elements ); ~~~~~~~~~~ [ 51%] Building C object CMakeFiles/minc2.dir/volume_io/Prog_utils/alloc_check.c.o /usr/bin/arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2=1 -D_XOPEN_SOURCE=500 -Dminc2_EXPORTS -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -fPIC -o CMakeFiles/minc2.dir/volume_io/Prog_utils/alloc_check.c.o -c /<>/volume_io/Prog_utils/alloc_check.c [ 52%] Building C object CMakeFiles/minc2.dir/volume_io/Prog_utils/arrays.c.o /usr/bin/arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2=1 -D_XOPEN_SOURCE=500 -Dminc2_EXPORTS -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -fPIC -o CMakeFiles/minc2.dir/volume_io/Prog_utils/arrays.c.o -c /<>/volume_io/Prog_utils/arrays.c [ 52%] Building C object CMakeFiles/minc2.dir/volume_io/Prog_utils/files.c.o /usr/bin/arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2=1 -D_XOPEN_SOURCE=500 -Dminc2_EXPORTS -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -fPIC -o CMakeFiles/minc2.dir/volume_io/Prog_utils/files.c.o -c /<>/volume_io/Prog_utils/files.c /<>/volume_io/Prog_utils/files.c: In function 'extract_directory': /<>/volume_io/Prog_utils/files.c:1249:35: warning: conversion to 'size_t' {aka 'unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] directory = alloc_string( slash_index ); ^~~~~~~~~~~ /<>/volume_io/Prog_utils/files.c: In function 'input_binary_data': /<>/volume_io/Prog_utils/files.c:1746:58: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'size_t' {aka 'unsigned int'} [-Wformat=] print_error( " (%d out of %d items of size %ld). ", n_done, n, ~~^ %d element_size ); ~~~~~~~~~~~~ /<>/volume_io/Prog_utils/files.c: In function 'output_binary_data': /<>/volume_io/Prog_utils/files.c:1786:58: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'size_t' {aka 'unsigned int'} [-Wformat=] print_error( " (%d out of %d items of size %ld). ", n_done, n, ~~^ %d element_size ); ~~~~~~~~~~~~ /<>/volume_io/Prog_utils/files.c: In function 'io_quoted_string': /<>/volume_io/Prog_utils/files.c:2445:34: warning: conversion to 'size_t' {aka 'unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] *str = alloc_string( length ); ^~~~~~ [ 53%] Building C object CMakeFiles/minc2.dir/volume_io/Prog_utils/print.c.o /usr/bin/arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2=1 -D_XOPEN_SOURCE=500 -Dminc2_EXPORTS -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -fPIC -o CMakeFiles/minc2.dir/volume_io/Prog_utils/print.c.o -c /<>/volume_io/Prog_utils/print.c [ 53%] Building C object CMakeFiles/minc2.dir/volume_io/Prog_utils/progress.c.o /usr/bin/arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2=1 -D_XOPEN_SOURCE=500 -Dminc2_EXPORTS -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -fPIC -o CMakeFiles/minc2.dir/volume_io/Prog_utils/progress.c.o -c /<>/volume_io/Prog_utils/progress.c [ 54%] Building C object CMakeFiles/minc2.dir/volume_io/Prog_utils/string.c.o /usr/bin/arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2=1 -D_XOPEN_SOURCE=500 -Dminc2_EXPORTS -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -fPIC -o CMakeFiles/minc2.dir/volume_io/Prog_utils/string.c.o -c /<>/volume_io/Prog_utils/string.c /<>/volume_io/Prog_utils/string.c: In function 'create_string': /<>/volume_io/Prog_utils/string.c:40:25: warning: conversion to 'size_t' {aka 'unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] str = alloc_string( string_length(initial) ); ^~~~~~~~~~~~~~~~~~~~~~ /<>/volume_io/Prog_utils/string.c: In function 'strip_outer_blanks': /<>/volume_io/Prog_utils/string.c:235:63: warning: conversion to 'size_t' {aka 'unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] stripped = alloc_string( last_non_blank - first_non_blank + 1 ); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~ [ 54%] Building C object CMakeFiles/minc2.dir/volume_io/Prog_utils/time.c.o /usr/bin/arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2=1 -D_XOPEN_SOURCE=500 -Dminc2_EXPORTS -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -fPIC -o CMakeFiles/minc2.dir/volume_io/Prog_utils/time.c.o -c /<>/volume_io/Prog_utils/time.c [ 54%] Building C object CMakeFiles/minc2.dir/volume_io/Volumes/evaluate.c.o /usr/bin/arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2=1 -D_XOPEN_SOURCE=500 -Dminc2_EXPORTS -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -fPIC -o CMakeFiles/minc2.dir/volume_io/Volumes/evaluate.c.o -c /<>/volume_io/Volumes/evaluate.c /<>/volume_io/Volumes/evaluate.c: In function 'trilinear_interpolate_rgb': /<>/volume_io/Volumes/evaluate.c:257:24: warning: conversion from 'VIO_Real' {aka 'double'} to 'unsigned int' may change value [-Wfloat-conversion] coefs[c] = outside_value; ^~~~~~~~~~~~~ /<>/volume_io/Volumes/evaluate.c:305:20: warning: conversion from 'VIO_Real' {aka 'double'} to 'int' may change value [-Wfloat-conversion] out_rgb[i] = c0 + w * dw; ^~ [ 55%] Building C object CMakeFiles/minc2.dir/volume_io/Volumes/get_hyperslab.c.o /usr/bin/arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2=1 -D_XOPEN_SOURCE=500 -Dminc2_EXPORTS -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -fPIC -o CMakeFiles/minc2.dir/volume_io/Volumes/get_hyperslab.c.o -c /<>/volume_io/Volumes/get_hyperslab.c [ 55%] Building C object CMakeFiles/minc2.dir/volume_io/Volumes/input_free.c.o /usr/bin/arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2=1 -D_XOPEN_SOURCE=500 -Dminc2_EXPORTS -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -fPIC -o CMakeFiles/minc2.dir/volume_io/Volumes/input_free.c.o -c /<>/volume_io/Volumes/input_free.c [ 56%] Building C object CMakeFiles/minc2.dir/volume_io/Volumes/input_mnc.c.o /usr/bin/arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2=1 -D_XOPEN_SOURCE=500 -Dminc2_EXPORTS -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -fPIC -o CMakeFiles/minc2.dir/volume_io/Volumes/input_mnc.c.o -c /<>/volume_io/Volumes/input_mnc.c /<>/volume_io/Volumes/input_mnc.c: In function 'initialize_minc_input_from_minc_id': /<>/volume_io/Volumes/input_mnc.c:373:61: warning: conversion to 'long unsigned int' from 'long int' may change the sign of the result [-Wsign-conversion] irr_starts[d] = malloc(sizeof(VIO_Real) * file->sizes_in_file[d]); ^ /<>/volume_io/Volumes/input_mnc.c:374:61: warning: conversion to 'long unsigned int' from 'long int' may change the sign of the result [-Wsign-conversion] irr_widths[d] = malloc(sizeof(VIO_Real) * file->sizes_in_file[d]); ^ [ 56%] Building C object CMakeFiles/minc2.dir/volume_io/Volumes/input_volume.c.o /usr/bin/arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2=1 -D_XOPEN_SOURCE=500 -Dminc2_EXPORTS -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -fPIC -o CMakeFiles/minc2.dir/volume_io/Volumes/input_volume.c.o -c /<>/volume_io/Volumes/input_volume.c [ 57%] Building C object CMakeFiles/minc2.dir/volume_io/Volumes/multidim_arrays.c.o /usr/bin/arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2=1 -D_XOPEN_SOURCE=500 -Dminc2_EXPORTS -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -fPIC -o CMakeFiles/minc2.dir/volume_io/Volumes/multidim_arrays.c.o -c /<>/volume_io/Volumes/multidim_arrays.c [ 57%] Building C object CMakeFiles/minc2.dir/volume_io/Volumes/output_mnc.c.o /usr/bin/arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2=1 -D_XOPEN_SOURCE=500 -Dminc2_EXPORTS -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -fPIC -o CMakeFiles/minc2.dir/volume_io/Volumes/output_mnc.c.o -c /<>/volume_io/Volumes/output_mnc.c /<>/volume_io/Volumes/output_mnc.c: In function 'add_minc_history': /<>/volume_io/Volumes/output_mnc.c:779:33: warning: conversion to 'size_t' {aka 'unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] new_history = alloc_string( old_att_length ); ^~~~~~~~~~~~~~ [ 58%] Building C object CMakeFiles/minc2.dir/volume_io/Volumes/output_volume.c.o /usr/bin/arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2=1 -D_XOPEN_SOURCE=500 -Dminc2_EXPORTS -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -fPIC -o CMakeFiles/minc2.dir/volume_io/Volumes/output_volume.c.o -c /<>/volume_io/Volumes/output_volume.c [ 58%] Building C object CMakeFiles/minc2.dir/volume_io/Volumes/set_hyperslab.c.o /usr/bin/arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2=1 -D_XOPEN_SOURCE=500 -Dminc2_EXPORTS -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -fPIC -o CMakeFiles/minc2.dir/volume_io/Volumes/set_hyperslab.c.o -c /<>/volume_io/Volumes/set_hyperslab.c [ 58%] Building C object CMakeFiles/minc2.dir/volume_io/Volumes/volume_cache.c.o /usr/bin/arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2=1 -D_XOPEN_SOURCE=500 -Dminc2_EXPORTS -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -fPIC -o CMakeFiles/minc2.dir/volume_io/Volumes/volume_cache.c.o -c /<>/volume_io/Volumes/volume_cache.c [ 59%] Building C object CMakeFiles/minc2.dir/volume_io/Volumes/volumes.c.o /usr/bin/arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2=1 -D_XOPEN_SOURCE=500 -Dminc2_EXPORTS -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -fPIC -o CMakeFiles/minc2.dir/volume_io/Volumes/volumes.c.o -c /<>/volume_io/Volumes/volumes.c /<>/volume_io/Volumes/volumes.c: In function 'copy_volume_definition_no_alloc': /<>/volume_io/Volumes/volumes.c:2630:60: warning: conversion to 'unsigned int' from 'int' may change the sign of the result [-Wsign-conversion] VIO_Real *irr_starts = malloc(sizeof(VIO_Real) * sizes[c]); ^ /<>/volume_io/Volumes/volumes.c:2631:60: warning: conversion to 'unsigned int' from 'int' may change the sign of the result [-Wsign-conversion] VIO_Real *irr_widths = malloc(sizeof(VIO_Real) * sizes[c]); ^ /<>/volume_io/Volumes/volumes.c: In function 'copy_volume_new_type': /<>/volume_io/Volumes/volumes.c:2819:44: warning: conversion from 'double' to 'signed char' may change value [-Wfloat-conversion] ((signed char *) dst)[i] = value; ^~~~~ /<>/volume_io/Volumes/volumes.c:2823:46: warning: conversion from 'double' to 'unsigned char' may change value [-Wfloat-conversion] ((unsigned char *) dst)[i] = value; ^~~~~ /<>/volume_io/Volumes/volumes.c:2829:45: warning: conversion from 'double' to 'short int' may change value [-Wfloat-conversion] ((signed short *) dst)[i] = value; ^~~~~ /<>/volume_io/Volumes/volumes.c:2833:47: warning: conversion from 'double' to 'short unsigned int' may change value [-Wfloat-conversion] ((unsigned short *) dst)[i] = value; ^~~~~ /<>/volume_io/Volumes/volumes.c:2839:43: warning: conversion from 'double' to 'int' may change value [-Wfloat-conversion] ((signed int *) dst)[i] = value; ^~~~~ /<>/volume_io/Volumes/volumes.c:2843:45: warning: conversion from 'double' to 'unsigned int' may change value [-Wfloat-conversion] ((unsigned int *) dst)[i] = value; ^~~~~ /<>/volume_io/Volumes/volumes.c:2847:34: warning: conversion from 'double' to 'float' may change value [-Wfloat-conversion] ((float *) dst)[i] = value; ^~~~~ /<>/volume_io/Volumes/volumes.c: In function 'set_volume_irregular_starts': /<>/volume_io/Volumes/volumes.c:2942:51: warning: conversion to 'long unsigned int' from 'long int' may change the sign of the result [-Wsign-conversion] volume->irregular_starts[idim] = malloc(count * sizeof (VIO_Real)); ^ /<>/volume_io/Volumes/volumes.c: In function 'set_volume_irregular_widths': /<>/volume_io/Volumes/volumes.c:2975:51: warning: conversion to 'long unsigned int' from 'long int' may change the sign of the result [-Wsign-conversion] volume->irregular_widths[idim] = malloc(count * sizeof (VIO_Real)); ^ [ 59%] Building C object CMakeFiles/minc2.dir/volume_io/Volumes/input_mnc2.c.o /usr/bin/arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2=1 -D_XOPEN_SOURCE=500 -Dminc2_EXPORTS -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -fPIC -o CMakeFiles/minc2.dir/volume_io/Volumes/input_mnc2.c.o -c /<>/volume_io/Volumes/input_mnc2.c /<>/volume_io/Volumes/input_mnc2.c: In function 'initialize_minc_input_from_minc2_id': /<>/volume_io/Volumes/input_mnc2.c:144:42: warning: conversion to 'misize_t' {aka 'long long unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] miget_dimension_sizes(file_dims, file->n_file_dimensions, dimension_size); ~~~~^~~~~~~~~~~~~~~~~~~ /<>/volume_io/Volumes/input_mnc2.c:145:63: warning: conversion to 'misize_t' {aka 'long long unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] miget_dimension_separations(file_dims, MI_ORDER_FILE, file->n_file_dimensions, file_step); ~~~~^~~~~~~~~~~~~~~~~~~ /<>/volume_io/Volumes/input_mnc2.c:146:58: warning: conversion to 'misize_t' {aka 'long long unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] miget_dimension_starts(file_dims, MI_ORDER_FILE, file->n_file_dimensions, file_start); ~~~~^~~~~~~~~~~~~~~~~~~ /<>/volume_io/Volumes/input_mnc2.c:153:32: warning: conversion from 'misize_t' {aka 'long long unsigned int'} to 'long int' may change value [-Wconversion] file->sizes_in_file[d] = dimension_size[d]; ^~~~~~~~~~~~~~ /<>/volume_io/Volumes/input_mnc2.c:179:21: warning: conversion to 'misize_t' {aka 'long long unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] slices_count*=dimension_size[d]; ^~ /<>/volume_io/Volumes/input_mnc2.c:179:23: warning: conversion from 'misize_t' {aka 'long long unsigned int'} to 'int' may change value [-Wconversion] slices_count*=dimension_size[d]; ^~~~~~~~~~~~~~ /<>/volume_io/Volumes/input_mnc2.c:181:38: warning: conversion to 'size_t' {aka 'unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] slice_start=(misize_t *)calloc(n_slice_dimensions,sizeof(misize_t)); ^~~~~~~~~~~~~~~~~~ /<>/volume_io/Volumes/input_mnc2.c:182:51: warning: conversion to 'size_t' {aka 'unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] miget_slice_range(file->minc2id,slice_start,n_slice_dimensions,&volume_max,&volume_min); ^~~~~~~~~~~~~~~~~~ /<>/volume_io/Volumes/input_mnc2.c:203:55: warning: conversion to 'size_t' {aka 'unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] miget_slice_range(file->minc2id,slice_start,n_slice_dimensions,&slice_max,&slice_min); ^~~~~~~~~~~~~~~~~~ /<>/volume_io/Volumes/input_mnc2.c:372:51: warning: conversion to 'long unsigned int' from 'long int' may change the sign of the result [-Wsign-conversion] irr_starts[d] = malloc(sizeof(VIO_Real) * file->sizes_in_file[d]); ^ /<>/volume_io/Volumes/input_mnc2.c:373:51: warning: conversion to 'long unsigned int' from 'long int' may change the sign of the result [-Wsign-conversion] irr_widths[d] = malloc(sizeof(VIO_Real) * file->sizes_in_file[d]); ^ /<>/volume_io/Volumes/input_mnc2.c: In function 'input_minc2_hyperslab': /<>/volume_io/Volumes/input_mnc2.c:707:37: warning: conversion to 'misize_t' {aka 'long long unsigned int'} from 'long int' may change the sign of the result [-Wsign-conversion] used_count[n_file_dims] = file->sizes_in_file[n_file_dims]; ^~~~ [ 60%] Building C object CMakeFiles/minc2.dir/volume_io/Volumes/output_mnc2.c.o /usr/bin/arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2=1 -D_XOPEN_SOURCE=500 -Dminc2_EXPORTS -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -fPIC -o CMakeFiles/minc2.dir/volume_io/Volumes/output_mnc2.c.o -c /<>/volume_io/Volumes/output_mnc2.c /<>/volume_io/Volumes/output_mnc2.c: In function 'output_minc2_hyperslab': /<>/volume_io/Volumes/output_mnc2.c:875:37: warning: conversion to 'misize_t' {aka 'long long unsigned int'} from 'long int' may change the sign of the result [-Wsign-conversion] long_file_start[file_ind] = (long) file_start[file_ind]; ^ /<>/volume_io/Volumes/output_mnc2.c:876:37: warning: conversion to 'misize_t' {aka 'long long unsigned int'} from 'long int' may change the sign of the result [-Wsign-conversion] long_file_count[file_ind] = (long) file_count[file_ind]; ^ /<>/volume_io/Volumes/output_mnc2.c: In function 'output_the_volume2': /<>/volume_io/Volumes/output_mnc2.c:1246:77: warning: conversion to 'size_t' {aka 'unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] miset_slice_range(file->minc2id,(const misize_t*)file_indices,file->n_file_dimensions,real_max,real_min); ~~~~^~~~~~~~~~~~~~~~~~~ [ 60%] Linking C shared library libminc2.so /usr/bin/cmake -E cmake_link_script CMakeFiles/minc2.dir/link.txt --verbose=1 /usr/bin/arm-linux-gnueabi-gcc -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libminc2.so.5.2.0 -o libminc2.so.5.2.0 CMakeFiles/minc2.dir/libsrc2/convert.c.o CMakeFiles/minc2.dir/libsrc2/datatype.c.o CMakeFiles/minc2.dir/libsrc2/dimension.c.o CMakeFiles/minc2.dir/libsrc2/free.c.o CMakeFiles/minc2.dir/libsrc2/grpattr.c.o CMakeFiles/minc2.dir/libsrc2/hyper.c.o CMakeFiles/minc2.dir/libsrc2/label.c.o CMakeFiles/minc2.dir/libsrc2/m2util.c.o CMakeFiles/minc2.dir/libsrc2/record.c.o CMakeFiles/minc2.dir/libsrc2/slice.c.o CMakeFiles/minc2.dir/libsrc2/valid.c.o CMakeFiles/minc2.dir/libsrc2/volprops.c.o CMakeFiles/minc2.dir/libsrc2/volume.c.o CMakeFiles/minc2.dir/libcommon/minc2_error.c.o CMakeFiles/minc2.dir/libcommon/minc_config.c.o CMakeFiles/minc2.dir/libcommon/minc_error.c.o CMakeFiles/minc2.dir/libcommon/ParseArgv.c.o CMakeFiles/minc2.dir/libcommon/read_file_names.c.o CMakeFiles/minc2.dir/libcommon/restructure.c.o CMakeFiles/minc2.dir/libcommon/time_stamp.c.o CMakeFiles/minc2.dir/libsrc/dim_conversion.c.o CMakeFiles/minc2.dir/libsrc/image_conversion.c.o CMakeFiles/minc2.dir/libsrc/minc_convenience.c.o CMakeFiles/minc2.dir/libsrc/nd_loop.c.o CMakeFiles/minc2.dir/libsrc/netcdf_convenience.c.o CMakeFiles/minc2.dir/libsrc/value_conversion.c.o CMakeFiles/minc2.dir/libsrc/voxel_loop.c.o CMakeFiles/minc2.dir/libsrc/hdf_convenience.c.o CMakeFiles/minc2.dir/libsrc/minc_compat.c.o CMakeFiles/minc2.dir/libsrc/minc_simple.c.o CMakeFiles/minc2.dir/libsrc/minc_format_convert.c.o CMakeFiles/minc2.dir/volume_io/Geometry/colour.c.o CMakeFiles/minc2.dir/volume_io/Geometry/colour_def.c.o CMakeFiles/minc2.dir/volume_io/Geometry/gaussian.c.o CMakeFiles/minc2.dir/volume_io/Geometry/inverse.c.o CMakeFiles/minc2.dir/volume_io/Geometry/newton.c.o CMakeFiles/minc2.dir/volume_io/Geometry/points.c.o CMakeFiles/minc2.dir/volume_io/Geometry/splines.c.o CMakeFiles/minc2.dir/volume_io/Geometry/tensors.c.o CMakeFiles/minc2.dir/volume_io/Geometry/transforms.c.o CMakeFiles/minc2.dir/volume_io/MNI_formats/gen_xf_io.c.o CMakeFiles/minc2.dir/volume_io/MNI_formats/gen_xfs.c.o CMakeFiles/minc2.dir/volume_io/MNI_formats/grid_transforms.c.o CMakeFiles/minc2.dir/volume_io/MNI_formats/mni_io.c.o CMakeFiles/minc2.dir/volume_io/MNI_formats/tag_points.c.o CMakeFiles/minc2.dir/volume_io/MNI_formats/thin_plate_spline.c.o CMakeFiles/minc2.dir/volume_io/Prog_utils/alloc.c.o CMakeFiles/minc2.dir/volume_io/Prog_utils/alloc_check.c.o CMakeFiles/minc2.dir/volume_io/Prog_utils/arrays.c.o CMakeFiles/minc2.dir/volume_io/Prog_utils/files.c.o CMakeFiles/minc2.dir/volume_io/Prog_utils/print.c.o CMakeFiles/minc2.dir/volume_io/Prog_utils/progress.c.o CMakeFiles/minc2.dir/volume_io/Prog_utils/string.c.o CMakeFiles/minc2.dir/volume_io/Prog_utils/time.c.o CMakeFiles/minc2.dir/volume_io/Volumes/evaluate.c.o CMakeFiles/minc2.dir/volume_io/Volumes/get_hyperslab.c.o CMakeFiles/minc2.dir/volume_io/Volumes/input_free.c.o CMakeFiles/minc2.dir/volume_io/Volumes/input_mnc.c.o CMakeFiles/minc2.dir/volume_io/Volumes/input_volume.c.o CMakeFiles/minc2.dir/volume_io/Volumes/multidim_arrays.c.o CMakeFiles/minc2.dir/volume_io/Volumes/output_mnc.c.o CMakeFiles/minc2.dir/volume_io/Volumes/output_volume.c.o CMakeFiles/minc2.dir/volume_io/Volumes/set_hyperslab.c.o CMakeFiles/minc2.dir/volume_io/Volumes/volume_cache.c.o CMakeFiles/minc2.dir/volume_io/Volumes/volumes.c.o CMakeFiles/minc2.dir/volume_io/Volumes/input_mnc2.c.o CMakeFiles/minc2.dir/volume_io/Volumes/output_mnc2.c.o -Wl,-rpath,/usr/lib/arm-linux-gnueabi/hdf5/serial: /usr/lib/arm-linux-gnueabi/hdf5/serial/libhdf5.so -lpthread -lsz -lz -ldl -lm -lz -lrt -lnetcdf -lm -ldl -lnetcdf -ldl -lm -lrt -lnetcdf -lm -ldl -lnetcdf -lm -ldl /usr/bin/cmake -E cmake_symlink_library libminc2.so.5.2.0 libminc2.so.5.2.0 libminc2.so make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' [ 60%] Built target minc2 make -f ezminc/CMakeFiles/minc_io.dir/build.make ezminc/CMakeFiles/minc_io.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/ezminc /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/ezminc /<>/obj-arm-linux-gnueabi/ezminc/CMakeFiles/minc_io.dir/DependInfo.cmake --color= Scanning dependencies of target minc_io make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f ezminc/CMakeFiles/minc_io.dir/build.make ezminc/CMakeFiles/minc_io.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' [ 60%] Building CXX object ezminc/CMakeFiles/minc_io.dir/minc_1_rw.cpp.o cd /<>/obj-arm-linux-gnueabi/ezminc && /usr/bin/arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2 -DMINC2=1 -D_XOPEN_SOURCE=500 -Dminc_io_EXPORTS -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -fPIC -o CMakeFiles/minc_io.dir/minc_1_rw.cpp.o -c /<>/ezminc/minc_1_rw.cpp In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from /<>/ezminc/minc_1_rw.h:18, from /<>/ezminc/minc_1_rw.cpp:23: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]': /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:478:5: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from /<>/ezminc/minc_1_rw.h:18, from /<>/ezminc/minc_1_rw.cpp:23: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In member function 'void minc::minc_1_reader::open(const char*, bool, bool, bool)': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:847:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ^~~~~~~~~~~~~~ [ 61%] Building CXX object ezminc/CMakeFiles/minc_io.dir/minc_1_simple_rw.cpp.o cd /<>/obj-arm-linux-gnueabi/ezminc && /usr/bin/arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2 -DMINC2=1 -D_XOPEN_SOURCE=500 -Dminc_io_EXPORTS -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -fPIC -o CMakeFiles/minc_io.dir/minc_1_simple_rw.cpp.o -c /<>/ezminc/minc_1_simple_rw.cpp [ 61%] Linking CXX shared library libminc_io.so cd /<>/obj-arm-linux-gnueabi/ezminc && /usr/bin/cmake -E cmake_link_script CMakeFiles/minc_io.dir/link.txt --verbose=1 /usr/bin/arm-linux-gnueabi-g++ -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libminc_io.so.5.2.0 -o libminc_io.so.5.2.0 CMakeFiles/minc_io.dir/minc_1_rw.cpp.o CMakeFiles/minc_io.dir/minc_1_simple_rw.cpp.o -Wl,-rpath,/<>/obj-arm-linux-gnueabi:/usr/lib/arm-linux-gnueabi/hdf5/serial: ../libminc2.so.5.2.0 /usr/lib/arm-linux-gnueabi/hdf5/serial/libhdf5.so -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf cd /<>/obj-arm-linux-gnueabi/ezminc && /usr/bin/cmake -E cmake_symlink_library libminc_io.so.5.2.0 libminc_io.so.5.2.0 libminc_io.so make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' [ 61%] Built target minc_io make -f ezminc/examples/CMakeFiles/volume_avg.dir/build.make ezminc/examples/CMakeFiles/volume_avg.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/ezminc/examples /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/ezminc/examples /<>/obj-arm-linux-gnueabi/ezminc/examples/CMakeFiles/volume_avg.dir/DependInfo.cmake --color= Scanning dependencies of target volume_avg make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f ezminc/examples/CMakeFiles/volume_avg.dir/build.make ezminc/examples/CMakeFiles/volume_avg.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' [ 61%] Building CXX object ezminc/examples/CMakeFiles/volume_avg.dir/volume_avg.cpp.o cd /<>/obj-arm-linux-gnueabi/ezminc/examples && /usr/bin/arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2 -DMINC2=1 -D_XOPEN_SOURCE=500 -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -o CMakeFiles/volume_avg.dir/volume_avg.cpp.o -c /<>/ezminc/examples/volume_avg.cpp /<>/ezminc/examples/volume_avg.cpp: In function 'int main(int, char**)': /<>/ezminc/examples/volume_avg.cpp:128:47: warning: conversion from 'int' to 'float' may change value [-Wconversion] _sd.c_buf()[i]=sqrt(_sd.c_buf()[i]/(argc-1) - _avg.c_buf()[i]*_avg.c_buf()[i] ); ~~~~~^~~ [ 62%] Linking CXX executable volume_avg cd /<>/obj-arm-linux-gnueabi/ezminc/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/volume_avg.dir/link.txt --verbose=1 /usr/bin/arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/volume_avg.dir/volume_avg.cpp.o -o volume_avg -Wl,-rpath,/<>/obj-arm-linux-gnueabi/ezminc:/<>/obj-arm-linux-gnueabi:/usr/lib/arm-linux-gnueabi/hdf5/serial ../libminc_io.so.5.2.0 ../../libminc2.so.5.2.0 /usr/lib/arm-linux-gnueabi/hdf5/serial/libhdf5.so -lpthread -lsz -lz -ldl -lm -lz -ldl -lm -lm -ldl -lrt -lnetcdf make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' [ 62%] Built target volume_avg make -f ezminc/examples/CMakeFiles/trilinear_resample.dir/build.make ezminc/examples/CMakeFiles/trilinear_resample.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/ezminc/examples /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/ezminc/examples /<>/obj-arm-linux-gnueabi/ezminc/examples/CMakeFiles/trilinear_resample.dir/DependInfo.cmake --color= Scanning dependencies of target trilinear_resample make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f ezminc/examples/CMakeFiles/trilinear_resample.dir/build.make ezminc/examples/CMakeFiles/trilinear_resample.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' [ 63%] Building CXX object ezminc/examples/CMakeFiles/trilinear_resample.dir/trilinear_resample.cpp.o cd /<>/obj-arm-linux-gnueabi/ezminc/examples && /usr/bin/arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2 -DMINC2=1 -D_XOPEN_SOURCE=500 -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -o CMakeFiles/trilinear_resample.dir/trilinear_resample.cpp.o -c /<>/ezminc/examples/trilinear_resample.cpp /<>/ezminc/examples/trilinear_resample.cpp: In function 'int main(int, char**)': /<>/ezminc/examples/trilinear_resample.cpp:90:48: warning: conversion from 'double' to 'float' may change value [-Wfloat-conversion] old_step[i-1]=new_info[rdr.map_space(i)].step; /<>/ezminc/examples/trilinear_resample.cpp:91:49: warning: conversion from 'double' to 'float' may change value [-Wfloat-conversion] old_start[i-1]=new_info[rdr.map_space(i)].start; /<>/ezminc/examples/trilinear_resample.cpp:93:45: warning: conversion from 'size_t' {aka 'unsigned int'} to 'float' may change value [-Wconversion] float len=(new_info[rdr.map_space(i)].length)*old_step[i-1]; ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /<>/ezminc/examples/trilinear_resample.cpp:98:49: warning: conversion from 'double' to 'float' may change value [-Wfloat-conversion] new_start[i-1]=new_info[rdr.map_space(i)].start; /<>/ezminc/examples/trilinear_resample.cpp:100:58: warning: conversion from 'double' to 'size_t' {aka 'unsigned int'} may change value [-Wfloat-conversion] new_len[i-1]=new_info[rdr.map_space(i)].length=ceil(fabs(len/_step)); ~~~~^~~~~~~~~~~~~~~~~ /<>/ezminc/examples/trilinear_resample.cpp:109:51: warning: conversion from 'double' to 'float' may change value [-Wfloat-conversion] minc::fixed_vec<3,float> cc=IDX(x*_step,y*_step,z*_step); ~^~~~~~ /<>/ezminc/examples/trilinear_resample.cpp:109:59: warning: conversion from 'double' to 'float' may change value [-Wfloat-conversion] minc::fixed_vec<3,float> cc=IDX(x*_step,y*_step,z*_step); ~^~~~~~ /<>/ezminc/examples/trilinear_resample.cpp:109:67: warning: conversion from 'double' to 'float' may change value [-Wfloat-conversion] minc::fixed_vec<3,float> cc=IDX(x*_step,y*_step,z*_step); ~^~~~~~ /<>/ezminc/examples/trilinear_resample.cpp:115:53: warning: conversion from 'double' to 'float' may change value [-Wfloat-conversion] output_vol.set(x,y,z,input_vol.interpolate(cc[0],cc[1],cc[2])); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ In file included from /<>/ezminc/minc_1_simple_rw.h:19, from /<>/ezminc/examples/trilinear_resample.cpp:18: /<>/ezminc/minc_io_simple_volume.h: In instantiation of 'double minc::simple_volume::interpolate(float, float, float) const [with T = float]': /<>/ezminc/examples/trilinear_resample.cpp:115:71: required from here /<>/ezminc/minc_io_simple_volume.h:327:23: warning: conversion from 'float' to 'size_t' {aka 'unsigned int'} may change value [-Wfloat-conversion] size_t x=floor(_x); ~~~~~^~~~ /<>/ezminc/minc_io_simple_volume.h:328:23: warning: conversion from 'float' to 'size_t' {aka 'unsigned int'} may change value [-Wfloat-conversion] size_t y=floor(_y); ~~~~~^~~~ /<>/ezminc/minc_io_simple_volume.h:329:23: warning: conversion from 'float' to 'size_t' {aka 'unsigned int'} may change value [-Wfloat-conversion] size_t z=floor(_z); ~~~~~^~~~ /<>/ezminc/minc_io_simple_volume.h:331:20: warning: conversion from 'size_t' {aka 'unsigned int'} to 'float' may change value [-Wconversion] float dx=_x-x; ~~^~ /<>/ezminc/minc_io_simple_volume.h:332:20: warning: conversion from 'size_t' {aka 'unsigned int'} to 'float' may change value [-Wconversion] float dy=_y-y; ~~^~ /<>/ezminc/minc_io_simple_volume.h:333:20: warning: conversion from 'size_t' {aka 'unsigned int'} to 'float' may change value [-Wconversion] float dz=_z-z; ~~^~ [ 63%] Linking CXX executable trilinear_resample cd /<>/obj-arm-linux-gnueabi/ezminc/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/trilinear_resample.dir/link.txt --verbose=1 /usr/bin/arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/trilinear_resample.dir/trilinear_resample.cpp.o -o trilinear_resample -Wl,-rpath,/<>/obj-arm-linux-gnueabi/ezminc:/<>/obj-arm-linux-gnueabi:/usr/lib/arm-linux-gnueabi/hdf5/serial ../libminc_io.so.5.2.0 ../../libminc2.so.5.2.0 /usr/lib/arm-linux-gnueabi/hdf5/serial/libhdf5.so -lpthread -lsz -lz -ldl -lm -lz -ldl -lm -lm -ldl -lrt -lnetcdf make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' [ 63%] Built target trilinear_resample make -f ezminc/examples/CMakeFiles/volume_msq_dist.dir/build.make ezminc/examples/CMakeFiles/volume_msq_dist.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/ezminc/examples /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/ezminc/examples /<>/obj-arm-linux-gnueabi/ezminc/examples/CMakeFiles/volume_msq_dist.dir/DependInfo.cmake --color= Scanning dependencies of target volume_msq_dist make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f ezminc/examples/CMakeFiles/volume_msq_dist.dir/build.make ezminc/examples/CMakeFiles/volume_msq_dist.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' [ 63%] Building CXX object ezminc/examples/CMakeFiles/volume_msq_dist.dir/volume_msq_dist.cpp.o cd /<>/obj-arm-linux-gnueabi/ezminc/examples && /usr/bin/arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2 -DMINC2=1 -D_XOPEN_SOURCE=500 -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -o CMakeFiles/volume_msq_dist.dir/volume_msq_dist.cpp.o -c /<>/ezminc/examples/volume_msq_dist.cpp [ 64%] Linking CXX executable volume_msq_dist cd /<>/obj-arm-linux-gnueabi/ezminc/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/volume_msq_dist.dir/link.txt --verbose=1 /usr/bin/arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/volume_msq_dist.dir/volume_msq_dist.cpp.o -o volume_msq_dist -Wl,-rpath,/<>/obj-arm-linux-gnueabi/ezminc:/<>/obj-arm-linux-gnueabi:/usr/lib/arm-linux-gnueabi/hdf5/serial ../libminc_io.so.5.2.0 ../../libminc2.so.5.2.0 /usr/lib/arm-linux-gnueabi/hdf5/serial/libhdf5.so -lpthread -lsz -lz -ldl -lm -lz -ldl -lm -lm -ldl -lrt -lnetcdf make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' [ 64%] Built target volume_msq_dist make -f ezminc/examples/CMakeFiles/create_grid_file.dir/build.make ezminc/examples/CMakeFiles/create_grid_file.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/ezminc/examples /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/ezminc/examples /<>/obj-arm-linux-gnueabi/ezminc/examples/CMakeFiles/create_grid_file.dir/DependInfo.cmake --color= Scanning dependencies of target create_grid_file make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f ezminc/examples/CMakeFiles/create_grid_file.dir/build.make ezminc/examples/CMakeFiles/create_grid_file.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' [ 65%] Building CXX object ezminc/examples/CMakeFiles/create_grid_file.dir/create_grid_file.cpp.o cd /<>/obj-arm-linux-gnueabi/ezminc/examples && /usr/bin/arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2 -DMINC2=1 -D_XOPEN_SOURCE=500 -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -o CMakeFiles/create_grid_file.dir/create_grid_file.cpp.o -c /<>/ezminc/examples/create_grid_file.cpp /<>/ezminc/examples/create_grid_file.cpp: In function 'int main(int, char**)': /<>/ezminc/examples/create_grid_file.cpp:115:17: warning: conversion from 'double' to 'float' may change value [-Wfloat-conversion] def[0]=amp*sin(M_PI*pos[0]/100.0); ~~~^~~~~~~~~~~~~~~~~~~~~~~ /<>/ezminc/examples/create_grid_file.cpp:116:17: warning: conversion from 'double' to 'float' may change value [-Wfloat-conversion] def[1]=amp*sin(2*M_PI*pos[1]/100.0); ~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/ezminc/examples/create_grid_file.cpp:117:17: warning: conversion from 'double' to 'float' may change value [-Wfloat-conversion] def[2]=amp*cos(3*M_PI*pos[2]/100.0); ~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from /<>/ezminc/minc_1_rw.h:18, from /<>/ezminc/minc_1_simple.h:18, from /<>/ezminc/examples/create_grid_file.cpp:5: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {minc::dim_info}; _Tp = minc::dim_info; _Alloc = std::allocator]': /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {minc::dim_info}; _Tp = minc::dim_info; _Alloc = std::allocator]': /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ [ 65%] Linking CXX executable create_grid_file cd /<>/obj-arm-linux-gnueabi/ezminc/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/create_grid_file.dir/link.txt --verbose=1 /usr/bin/arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/create_grid_file.dir/create_grid_file.cpp.o -o create_grid_file -Wl,-rpath,/<>/obj-arm-linux-gnueabi/ezminc:/<>/obj-arm-linux-gnueabi:/usr/lib/arm-linux-gnueabi/hdf5/serial ../libminc_io.so.5.2.0 ../../libminc2.so.5.2.0 /usr/lib/arm-linux-gnueabi/hdf5/serial/libhdf5.so -lpthread -lsz -lz -ldl -lm -lz -ldl -lm -lm -ldl -lrt -lnetcdf make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' [ 65%] Built target create_grid_file make -f ezminc/tests/CMakeFiles/ezminc_rw_test2.dir/build.make ezminc/tests/CMakeFiles/ezminc_rw_test2.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/ezminc/tests /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/ezminc/tests /<>/obj-arm-linux-gnueabi/ezminc/tests/CMakeFiles/ezminc_rw_test2.dir/DependInfo.cmake --color= Scanning dependencies of target ezminc_rw_test2 make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f ezminc/tests/CMakeFiles/ezminc_rw_test2.dir/build.make ezminc/tests/CMakeFiles/ezminc_rw_test2.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' [ 65%] Building CXX object ezminc/tests/CMakeFiles/ezminc_rw_test2.dir/minc_rw_test2.cpp.o cd /<>/obj-arm-linux-gnueabi/ezminc/tests && /usr/bin/arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2 -DMINC2=1 -D_XOPEN_SOURCE=500 -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -o CMakeFiles/ezminc_rw_test2.dir/minc_rw_test2.cpp.o -c /<>/ezminc/tests/minc_rw_test2.cpp /<>/ezminc/tests/minc_rw_test2.cpp: In function 'int main(int, char**)': /<>/ezminc/tests/minc_rw_test2.cpp:27:25: warning: conversion from 'size_t' {aka 'unsigned int'} to 'float' may change value [-Wconversion] vol(x,y,z)=x+y+z; ~~~^~ [ 66%] Linking CXX executable ezminc_rw_test2 cd /<>/obj-arm-linux-gnueabi/ezminc/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/ezminc_rw_test2.dir/link.txt --verbose=1 /usr/bin/arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ezminc_rw_test2.dir/minc_rw_test2.cpp.o -o ezminc_rw_test2 -Wl,-rpath,/<>/obj-arm-linux-gnueabi/ezminc:/<>/obj-arm-linux-gnueabi:/usr/lib/arm-linux-gnueabi/hdf5/serial ../libminc_io.so.5.2.0 ../../libminc2.so.5.2.0 /usr/lib/arm-linux-gnueabi/hdf5/serial/libhdf5.so -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' [ 66%] Built target ezminc_rw_test2 make -f ezminc/tests/CMakeFiles/ezminc_rw_test.dir/build.make ezminc/tests/CMakeFiles/ezminc_rw_test.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/ezminc/tests /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/ezminc/tests /<>/obj-arm-linux-gnueabi/ezminc/tests/CMakeFiles/ezminc_rw_test.dir/DependInfo.cmake --color= Scanning dependencies of target ezminc_rw_test make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f ezminc/tests/CMakeFiles/ezminc_rw_test.dir/build.make ezminc/tests/CMakeFiles/ezminc_rw_test.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' [ 67%] Building CXX object ezminc/tests/CMakeFiles/ezminc_rw_test.dir/ezminc_rw_test.cpp.o cd /<>/obj-arm-linux-gnueabi/ezminc/tests && /usr/bin/arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2 -DMINC2=1 -D_XOPEN_SOURCE=500 -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -o CMakeFiles/ezminc_rw_test.dir/ezminc_rw_test.cpp.o -c /<>/ezminc/tests/ezminc_rw_test.cpp /<>/ezminc/tests/ezminc_rw_test.cpp: In instantiation of 'void make_rw_test(const char*, int, nc_type, bool, double) [with TPixel = unsigned char; nc_type = int]': /<>/ezminc/tests/ezminc_rw_test.cpp:181:68: required from here /<>/ezminc/tests/ezminc_rw_test.cpp:44:52: warning: conversion from 'double' to '__gnu_cxx::__alloc_traits, unsigned char>::value_type' {aka 'unsigned char'} may change value [-Wfloat-conversion] buffer[i]=static_cast(random())*100.0/RAND_MAX; ^ /<>/ezminc/tests/ezminc_rw_test.cpp:59:18: warning: conversion from 'int' to '__gnu_cxx::__alloc_traits, short int>::value_type' {aka 'short int'} may change value [-Wconversion] short_attr[i]=i; /<>/ezminc/tests/ezminc_rw_test.cpp: In instantiation of 'void make_rw_test(const char*, int, nc_type, bool, double) [with TPixel = int; nc_type = int]': /<>/ezminc/tests/ezminc_rw_test.cpp:184:55: required from here /<>/ezminc/tests/ezminc_rw_test.cpp:44:52: warning: conversion from 'double' to '__gnu_cxx::__alloc_traits, int>::value_type' {aka 'int'} may change value [-Wfloat-conversion] buffer[i]=static_cast(random())*100.0/RAND_MAX; ^ /<>/ezminc/tests/ezminc_rw_test.cpp:59:18: warning: conversion from 'int' to '__gnu_cxx::__alloc_traits, short int>::value_type' {aka 'short int'} may change value [-Wconversion] short_attr[i]=i; /<>/ezminc/tests/ezminc_rw_test.cpp: In instantiation of 'void make_rw_test(const char*, int, nc_type, bool, double) [with TPixel = float; nc_type = int]': /<>/ezminc/tests/ezminc_rw_test.cpp:187:61: required from here /<>/ezminc/tests/ezminc_rw_test.cpp:44:52: warning: conversion from 'double' to '__gnu_cxx::__alloc_traits, float>::value_type' {aka 'float'} may change value [-Wfloat-conversion] buffer[i]=static_cast(random())*100.0/RAND_MAX; ^ /<>/ezminc/tests/ezminc_rw_test.cpp:59:18: warning: conversion from 'int' to '__gnu_cxx::__alloc_traits, short int>::value_type' {aka 'short int'} may change value [-Wconversion] short_attr[i]=i; /<>/ezminc/tests/ezminc_rw_test.cpp: In instantiation of 'void make_rw_test(const char*, int, nc_type, bool, double) [with TPixel = double; nc_type = int]': /<>/ezminc/tests/ezminc_rw_test.cpp:190:64: required from here /<>/ezminc/tests/ezminc_rw_test.cpp:59:18: warning: conversion from 'int' to '__gnu_cxx::__alloc_traits, short int>::value_type' {aka 'short int'} may change value [-Wconversion] [ 67%] Linking CXX executable ezminc_rw_test cd /<>/obj-arm-linux-gnueabi/ezminc/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/ezminc_rw_test.dir/link.txt --verbose=1 /usr/bin/arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ezminc_rw_test.dir/ezminc_rw_test.cpp.o -o ezminc_rw_test -Wl,-rpath,/<>/obj-arm-linux-gnueabi/ezminc:/<>/obj-arm-linux-gnueabi:/usr/lib/arm-linux-gnueabi/hdf5/serial ../libminc_io.so.5.2.0 ../../libminc2.so.5.2.0 /usr/lib/arm-linux-gnueabi/hdf5/serial/libhdf5.so -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' [ 67%] Built target ezminc_rw_test make -f testdir/CMakeFiles/minc2-leak-test.dir/build.make testdir/CMakeFiles/minc2-leak-test.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/testdir /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/testdir /<>/obj-arm-linux-gnueabi/testdir/CMakeFiles/minc2-leak-test.dir/DependInfo.cmake --color= Scanning dependencies of target minc2-leak-test make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f testdir/CMakeFiles/minc2-leak-test.dir/build.make testdir/CMakeFiles/minc2-leak-test.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' [ 67%] Building C object testdir/CMakeFiles/minc2-leak-test.dir/minc2-leak-test.c.o cd /<>/obj-arm-linux-gnueabi/testdir && /usr/bin/arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2=1 -D_XOPEN_SOURCE=500 -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -o CMakeFiles/minc2-leak-test.dir/minc2-leak-test.c.o -c /<>/testdir/minc2-leak-test.c /<>/testdir/minc2-leak-test.c: In function 'hdf5_check_objects': /<>/testdir/minc2-leak-test.c:58:21: warning: conversion to 'unsigned int' from 'ssize_t' {aka 'int'} may change the sign of the result [-Wsign-conversion] objs = malloc(cnt * sizeof(hid_t)); ^ /<>/testdir/minc2-leak-test.c:60:46: warning: conversion to 'size_t' {aka 'unsigned int'} from 'ssize_t' {aka 'int'} may change the sign of the result [-Wsign-conversion] howmany = H5Fget_obj_ids(fid, H5F_OBJ_ALL, cnt, objs); ^~~ /<>/testdir/minc2-leak-test.c: In function 'leak_loop': /<>/testdir/minc2-leak-test.c:113:40: warning: conversion to 'unsigned int' from 'int' may change the sign of the result [-Wsign-conversion] buffer = (double *) malloc( n_voxels * sizeof(double)); ^ /<>/testdir/minc2-leak-test.c: In function 'create_test_image': /<>/testdir/minc2-leak-test.c:235:41: warning: conversion to 'unsigned int' from 'int' may change the sign of the result [-Wsign-conversion] buf = ( uint16_t * ) malloc ( nvoxels * sizeof ( uint16_t ) ); ^ /<>/testdir/minc2-leak-test.c:253:16: warning: conversion to 'misize_t' {aka 'long long unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] start[0] = i; ^ /<>/testdir/minc2-leak-test.c: In function 'main': /<>/testdir/minc2-leak-test.c:306:46: warning: conversion to 'misize_t' {aka 'long long unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] result = miget_dimension_sizes(dimensions, ndims, sizes); ^~~~~ [ 68%] Linking C executable minc2-leak-test cd /<>/obj-arm-linux-gnueabi/testdir && /usr/bin/cmake -E cmake_link_script CMakeFiles/minc2-leak-test.dir/link.txt --verbose=1 /usr/bin/arm-linux-gnueabi-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/minc2-leak-test.dir/minc2-leak-test.c.o -o minc2-leak-test -Wl,-rpath,/<>/obj-arm-linux-gnueabi:/usr/lib/arm-linux-gnueabi/hdf5/serial ../libminc2.so.5.2.0 /usr/lib/arm-linux-gnueabi/hdf5/serial/libhdf5.so -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' [ 68%] Built target minc2-leak-test make -f testdir/CMakeFiles/minc2-read-metadata.dir/build.make testdir/CMakeFiles/minc2-read-metadata.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/testdir /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/testdir /<>/obj-arm-linux-gnueabi/testdir/CMakeFiles/minc2-read-metadata.dir/DependInfo.cmake --color= Scanning dependencies of target minc2-read-metadata make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f testdir/CMakeFiles/minc2-read-metadata.dir/build.make testdir/CMakeFiles/minc2-read-metadata.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' [ 68%] Building C object testdir/CMakeFiles/minc2-read-metadata.dir/minc2-read-metadata.c.o cd /<>/obj-arm-linux-gnueabi/testdir && /usr/bin/arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2=1 -D_XOPEN_SOURCE=500 -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -o CMakeFiles/minc2-read-metadata.dir/minc2-read-metadata.c.o -c /<>/testdir/minc2-read-metadata.c [ 69%] Linking C executable minc2-read-metadata cd /<>/obj-arm-linux-gnueabi/testdir && /usr/bin/cmake -E cmake_link_script CMakeFiles/minc2-read-metadata.dir/link.txt --verbose=1 /usr/bin/arm-linux-gnueabi-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/minc2-read-metadata.dir/minc2-read-metadata.c.o -o minc2-read-metadata -Wl,-rpath,/<>/obj-arm-linux-gnueabi:/usr/lib/arm-linux-gnueabi/hdf5/serial ../libminc2.so.5.2.0 /usr/lib/arm-linux-gnueabi/hdf5/serial/libhdf5.so -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' [ 69%] Built target minc2-read-metadata make -f testdir/CMakeFiles/copy_xfm.dir/build.make testdir/CMakeFiles/copy_xfm.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/testdir /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/testdir /<>/obj-arm-linux-gnueabi/testdir/CMakeFiles/copy_xfm.dir/DependInfo.cmake --color= Scanning dependencies of target copy_xfm make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f testdir/CMakeFiles/copy_xfm.dir/build.make testdir/CMakeFiles/copy_xfm.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' [ 69%] Building C object testdir/CMakeFiles/copy_xfm.dir/vio_xfm_test/copy-xfm.c.o cd /<>/obj-arm-linux-gnueabi/testdir && /usr/bin/arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2=1 -D_XOPEN_SOURCE=500 -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -o CMakeFiles/copy_xfm.dir/vio_xfm_test/copy-xfm.c.o -c /<>/testdir/vio_xfm_test/copy-xfm.c [ 69%] Linking C executable copy_xfm cd /<>/obj-arm-linux-gnueabi/testdir && /usr/bin/cmake -E cmake_link_script CMakeFiles/copy_xfm.dir/link.txt --verbose=1 /usr/bin/arm-linux-gnueabi-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/copy_xfm.dir/vio_xfm_test/copy-xfm.c.o -o copy_xfm -Wl,-rpath,/usr/lib/arm-linux-gnueabi/hdf5/serial:/<>/obj-arm-linux-gnueabi /usr/lib/arm-linux-gnueabi/hdf5/serial/libhdf5.so -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf ../libminc2.so.5.2.0 /usr/lib/arm-linux-gnueabi/hdf5/serial/libhdf5.so -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lrt -lm -ldl -lnetcdf -lm -ldl -lnetcdf make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' [ 69%] Built target copy_xfm make -f testdir/CMakeFiles/minc2-volprops-test.dir/build.make testdir/CMakeFiles/minc2-volprops-test.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/testdir /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/testdir /<>/obj-arm-linux-gnueabi/testdir/CMakeFiles/minc2-volprops-test.dir/DependInfo.cmake --color= Scanning dependencies of target minc2-volprops-test make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f testdir/CMakeFiles/minc2-volprops-test.dir/build.make testdir/CMakeFiles/minc2-volprops-test.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' [ 69%] Building C object testdir/CMakeFiles/minc2-volprops-test.dir/minc2-volprops-test.c.o cd /<>/obj-arm-linux-gnueabi/testdir && /usr/bin/arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2=1 -D_XOPEN_SOURCE=500 -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -o CMakeFiles/minc2-volprops-test.dir/minc2-volprops-test.c.o -c /<>/testdir/minc2-volprops-test.c [ 70%] Linking C executable minc2-volprops-test cd /<>/obj-arm-linux-gnueabi/testdir && /usr/bin/cmake -E cmake_link_script CMakeFiles/minc2-volprops-test.dir/link.txt --verbose=1 /usr/bin/arm-linux-gnueabi-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/minc2-volprops-test.dir/minc2-volprops-test.c.o -o minc2-volprops-test -Wl,-rpath,/<>/obj-arm-linux-gnueabi:/usr/lib/arm-linux-gnueabi/hdf5/serial ../libminc2.so.5.2.0 /usr/lib/arm-linux-gnueabi/hdf5/serial/libhdf5.so -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' [ 70%] Built target minc2-volprops-test make -f testdir/CMakeFiles/volume_test.dir/build.make testdir/CMakeFiles/volume_test.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/testdir /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/testdir /<>/obj-arm-linux-gnueabi/testdir/CMakeFiles/volume_test.dir/DependInfo.cmake --color= Scanning dependencies of target volume_test make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f testdir/CMakeFiles/volume_test.dir/build.make testdir/CMakeFiles/volume_test.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' [ 70%] Building C object testdir/CMakeFiles/volume_test.dir/volume_test.c.o cd /<>/obj-arm-linux-gnueabi/testdir && /usr/bin/arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2=1 -D_XOPEN_SOURCE=500 -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -o CMakeFiles/volume_test.dir/volume_test.c.o -c /<>/testdir/volume_test.c [ 71%] Linking C executable volume_test cd /<>/obj-arm-linux-gnueabi/testdir && /usr/bin/cmake -E cmake_link_script CMakeFiles/volume_test.dir/link.txt --verbose=1 /usr/bin/arm-linux-gnueabi-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/volume_test.dir/volume_test.c.o -o volume_test -Wl,-rpath,/<>/obj-arm-linux-gnueabi:/usr/lib/arm-linux-gnueabi/hdf5/serial ../libminc2.so.5.2.0 /usr/lib/arm-linux-gnueabi/hdf5/serial/libhdf5.so -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' [ 71%] Built target volume_test make -f testdir/CMakeFiles/minc2-create-test-images-2.dir/build.make testdir/CMakeFiles/minc2-create-test-images-2.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/testdir /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/testdir /<>/obj-arm-linux-gnueabi/testdir/CMakeFiles/minc2-create-test-images-2.dir/DependInfo.cmake --color= Scanning dependencies of target minc2-create-test-images-2 make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f testdir/CMakeFiles/minc2-create-test-images-2.dir/build.make testdir/CMakeFiles/minc2-create-test-images-2.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' [ 71%] Building C object testdir/CMakeFiles/minc2-create-test-images-2.dir/minc2-create-test-images-2.c.o cd /<>/obj-arm-linux-gnueabi/testdir && /usr/bin/arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2=1 -D_XOPEN_SOURCE=500 -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -o CMakeFiles/minc2-create-test-images-2.dir/minc2-create-test-images-2.c.o -c /<>/testdir/minc2-create-test-images-2.c /<>/testdir/minc2-create-test-images-2.c: In function 'create_real_as_int_image': /<>/testdir/minc2-create-test-images-2.c:78:16: warning: conversion to 'misize_t' {aka 'long long unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] start[0] = i; ^ /<>/testdir/minc2-create-test-images-2.c: In function 'create_real_as_float_image': /<>/testdir/minc2-create-test-images-2.c:143:17: warning: conversion from 'int' to 'float' may change value [-Wconversion] buf[i] = i * 0.001f; ^ /<>/testdir/minc2-create-test-images-2.c:154:16: warning: conversion to 'misize_t' {aka 'long long unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] start[0] = i; ^ [ 72%] Linking C executable minc2-create-test-images-2 cd /<>/obj-arm-linux-gnueabi/testdir && /usr/bin/cmake -E cmake_link_script CMakeFiles/minc2-create-test-images-2.dir/link.txt --verbose=1 /usr/bin/arm-linux-gnueabi-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/minc2-create-test-images-2.dir/minc2-create-test-images-2.c.o -o minc2-create-test-images-2 -Wl,-rpath,/<>/obj-arm-linux-gnueabi:/usr/lib/arm-linux-gnueabi/hdf5/serial ../libminc2.so.5.2.0 /usr/lib/arm-linux-gnueabi/hdf5/serial/libhdf5.so -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' [ 72%] Built target minc2-create-test-images-2 make -f testdir/CMakeFiles/minc2-record-test.dir/build.make testdir/CMakeFiles/minc2-record-test.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/testdir /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/testdir /<>/obj-arm-linux-gnueabi/testdir/CMakeFiles/minc2-record-test.dir/DependInfo.cmake --color= Scanning dependencies of target minc2-record-test make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f testdir/CMakeFiles/minc2-record-test.dir/build.make testdir/CMakeFiles/minc2-record-test.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' [ 73%] Building C object testdir/CMakeFiles/minc2-record-test.dir/minc2-record-test.c.o cd /<>/obj-arm-linux-gnueabi/testdir && /usr/bin/arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2=1 -D_XOPEN_SOURCE=500 -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -o CMakeFiles/minc2-record-test.dir/minc2-record-test.c.o -c /<>/testdir/minc2-record-test.c /<>/testdir/minc2-record-test.c: In function 'main': /<>/testdir/minc2-record-test.c:85:29: warning: conversion to 'misize_t' {aka 'long long unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] coords[0] = i; ^ /<>/testdir/minc2-record-test.c:86:29: warning: conversion to 'misize_t' {aka 'long long unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] coords[1] = j; ^ /<>/testdir/minc2-record-test.c:87:29: warning: conversion to 'misize_t' {aka 'long long unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] coords[2] = k; ^ /<>/testdir/minc2-record-test.c:105:29: warning: conversion to 'misize_t' {aka 'long long unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] coords[0] = i; ^ /<>/testdir/minc2-record-test.c:106:29: warning: conversion to 'misize_t' {aka 'long long unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] coords[1] = j; ^ /<>/testdir/minc2-record-test.c:107:29: warning: conversion to 'misize_t' {aka 'long long unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] coords[2] = k; ^ [ 73%] Linking C executable minc2-record-test cd /<>/obj-arm-linux-gnueabi/testdir && /usr/bin/cmake -E cmake_link_script CMakeFiles/minc2-record-test.dir/link.txt --verbose=1 /usr/bin/arm-linux-gnueabi-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/minc2-record-test.dir/minc2-record-test.c.o -o minc2-record-test -Wl,-rpath,/<>/obj-arm-linux-gnueabi:/usr/lib/arm-linux-gnueabi/hdf5/serial ../libminc2.so.5.2.0 /usr/lib/arm-linux-gnueabi/hdf5/serial/libhdf5.so -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' [ 73%] Built target minc2-record-test make -f testdir/CMakeFiles/minc_long_attr.dir/build.make testdir/CMakeFiles/minc_long_attr.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/testdir /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/testdir /<>/obj-arm-linux-gnueabi/testdir/CMakeFiles/minc_long_attr.dir/DependInfo.cmake --color= Scanning dependencies of target minc_long_attr make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f testdir/CMakeFiles/minc_long_attr.dir/build.make testdir/CMakeFiles/minc_long_attr.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' [ 73%] Building C object testdir/CMakeFiles/minc_long_attr.dir/minc_long_attr.c.o cd /<>/obj-arm-linux-gnueabi/testdir && /usr/bin/arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2=1 -D_XOPEN_SOURCE=500 -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -o CMakeFiles/minc_long_attr.dir/minc_long_attr.c.o -c /<>/testdir/minc_long_attr.c /<>/testdir/minc_long_attr.c: In function 'test1': /<>/testdir/minc_long_attr.c:125:32: warning: conversion to 'size_t' {aka 'unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] ip->large_attribute=calloc(ip->attribute_size,sizeof(char)); ~~^~~~~~~~~~~~~~~~ /<>/testdir/minc_long_attr.c:126:52: warning: conversion to 'size_t' {aka 'unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] memset(ip->large_attribute,'X',ip->attribute_size-1); ~~~~~~~~~~~~~~~~~~^~ /<>/testdir/minc_long_attr.c: In function 'test3': /<>/testdir/minc_long_attr.c:207:11: warning: conversion to 'size_t' {aka 'unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] total *= dims[i].length; ^~ /<>/testdir/minc_long_attr.c:257:14: warning: conversion to 'size_t' {aka 'unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] att=malloc(att_length); ^~~~~~~~~~ /<>/testdir/minc_long_attr.c:262:37: warning: conversion to 'size_t' {aka 'unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] if(memcmp(att,ip->large_attribute,att_length)!=0) ^~~~~~~~~~ [ 74%] Linking C executable minc_long_attr cd /<>/obj-arm-linux-gnueabi/testdir && /usr/bin/cmake -E cmake_link_script CMakeFiles/minc_long_attr.dir/link.txt --verbose=1 /usr/bin/arm-linux-gnueabi-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/minc_long_attr.dir/minc_long_attr.c.o -o minc_long_attr -Wl,-rpath,/<>/obj-arm-linux-gnueabi:/usr/lib/arm-linux-gnueabi/hdf5/serial ../libminc2.so.5.2.0 /usr/lib/arm-linux-gnueabi/hdf5/serial/libhdf5.so -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' [ 74%] Built target minc_long_attr make -f testdir/CMakeFiles/minc2-create-test-images.dir/build.make testdir/CMakeFiles/minc2-create-test-images.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/testdir /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/testdir /<>/obj-arm-linux-gnueabi/testdir/CMakeFiles/minc2-create-test-images.dir/DependInfo.cmake --color= Scanning dependencies of target minc2-create-test-images make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f testdir/CMakeFiles/minc2-create-test-images.dir/build.make testdir/CMakeFiles/minc2-create-test-images.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' [ 74%] Building C object testdir/CMakeFiles/minc2-create-test-images.dir/minc2-create-test-images.c.o cd /<>/obj-arm-linux-gnueabi/testdir && /usr/bin/arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2=1 -D_XOPEN_SOURCE=500 -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -o CMakeFiles/minc2-create-test-images.dir/minc2-create-test-images.c.o -c /<>/testdir/minc2-create-test-images.c /<>/testdir/minc2-create-test-images.c: In function 'create_3D_image': /<>/testdir/minc2-create-test-images.c:137:16: warning: conversion to 'misize_t' {aka 'long long unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] start[0] = i; ^ /<>/testdir/minc2-create-test-images.c: In function 'create_4D_image': /<>/testdir/minc2-create-test-images.c:210:16: warning: conversion to 'misize_t' {aka 'long long unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] start[0] = i; ^ /<>/testdir/minc2-create-test-images.c:212:18: warning: conversion to 'misize_t' {aka 'long long unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] start[1] = j; ^ [ 75%] Linking C executable minc2-create-test-images cd /<>/obj-arm-linux-gnueabi/testdir && /usr/bin/cmake -E cmake_link_script CMakeFiles/minc2-create-test-images.dir/link.txt --verbose=1 /usr/bin/arm-linux-gnueabi-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/minc2-create-test-images.dir/minc2-create-test-images.c.o -o minc2-create-test-images -Wl,-rpath,/<>/obj-arm-linux-gnueabi:/usr/lib/arm-linux-gnueabi/hdf5/serial ../libminc2.so.5.2.0 /usr/lib/arm-linux-gnueabi/hdf5/serial/libhdf5.so -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' [ 75%] Built target minc2-create-test-images make -f testdir/CMakeFiles/minc2-grpattr-test.dir/build.make testdir/CMakeFiles/minc2-grpattr-test.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/testdir /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/testdir /<>/obj-arm-linux-gnueabi/testdir/CMakeFiles/minc2-grpattr-test.dir/DependInfo.cmake --color= Scanning dependencies of target minc2-grpattr-test make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f testdir/CMakeFiles/minc2-grpattr-test.dir/build.make testdir/CMakeFiles/minc2-grpattr-test.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' [ 75%] Building C object testdir/CMakeFiles/minc2-grpattr-test.dir/minc2-grpattr-test.c.o cd /<>/obj-arm-linux-gnueabi/testdir && /usr/bin/arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2=1 -D_XOPEN_SOURCE=500 -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -o CMakeFiles/minc2-grpattr-test.dir/minc2-grpattr-test.c.o -c /<>/testdir/minc2-grpattr-test.c [ 75%] Linking C executable minc2-grpattr-test cd /<>/obj-arm-linux-gnueabi/testdir && /usr/bin/cmake -E cmake_link_script CMakeFiles/minc2-grpattr-test.dir/link.txt --verbose=1 /usr/bin/arm-linux-gnueabi-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/minc2-grpattr-test.dir/minc2-grpattr-test.c.o -o minc2-grpattr-test -Wl,-rpath,/<>/obj-arm-linux-gnueabi:/usr/lib/arm-linux-gnueabi/hdf5/serial ../libminc2.so.5.2.0 /usr/lib/arm-linux-gnueabi/hdf5/serial/libhdf5.so -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' [ 75%] Built target minc2-grpattr-test make -f testdir/CMakeFiles/minc2-hyper-test.dir/build.make testdir/CMakeFiles/minc2-hyper-test.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/testdir /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/testdir /<>/obj-arm-linux-gnueabi/testdir/CMakeFiles/minc2-hyper-test.dir/DependInfo.cmake --color= Scanning dependencies of target minc2-hyper-test make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f testdir/CMakeFiles/minc2-hyper-test.dir/build.make testdir/CMakeFiles/minc2-hyper-test.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' [ 76%] Building C object testdir/CMakeFiles/minc2-hyper-test.dir/minc2-hyper-test.c.o cd /<>/obj-arm-linux-gnueabi/testdir && /usr/bin/arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2=1 -D_XOPEN_SOURCE=500 -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -o CMakeFiles/minc2-hyper-test.dir/minc2-hyper-test.c.o -c /<>/testdir/minc2-hyper-test.c /<>/testdir/minc2-hyper-test.c: In function 'create_and_test_image': /<>/testdir/minc2-hyper-test.c:89:26: warning: conversion to 'short unsigned int' from 'short int' may change the sign of the result [-Wsign-conversion] stmp2[i][j][k] = (short)((i*XP)+(j*YP)+(k*ZP)); ^ /<>/testdir/minc2-hyper-test.c:261:20: warning: conversion to 'misize_t' {aka 'long long unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] start[0] = i; ^ /<>/testdir/minc2-hyper-test.c:262:20: warning: conversion to 'misize_t' {aka 'long long unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] start[1] = j; ^ /<>/testdir/minc2-hyper-test.c:263:20: warning: conversion to 'misize_t' {aka 'long long unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] start[2] = k; ^ /<>/testdir/minc2-hyper-test.c: In function 'test1': /<>/testdir/minc2-hyper-test.c:393:31: warning: conversion to 'short int' from 'short unsigned int' may change the sign of the result [-Wsign-conversion] short t = stemp[i][j][k]; ^~~~~ /<>/testdir/minc2-hyper-test.c:418:31: warning: conversion to 'short int' from 'short unsigned int' may change the sign of the result [-Wsign-conversion] short t = stemp[i][j][k] ^ 0x5555; ^~~~~ /<>/testdir/minc2-hyper-test.c:424:38: warning: conversion to 'short unsigned int' from 'short int' may change the sign of the result [-Wsign-conversion] stemp[i][j][k] = t; ^ /<>/testdir/minc2-hyper-test.c:458:31: warning: conversion to 'short int' from 'short unsigned int' may change the sign of the result [-Wsign-conversion] short t = stmp2[i][j][k]; ^~~~~ /<>/testdir/minc2-hyper-test.c: In function 'test3': /<>/testdir/minc2-hyper-test.c:814:28: warning: conversion to 'misize_t' {aka 'long long unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] start[0] = i; ^ /<>/testdir/minc2-hyper-test.c:815:28: warning: conversion to 'misize_t' {aka 'long long unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] start[1] = j; ^ /<>/testdir/minc2-hyper-test.c:816:28: warning: conversion to 'misize_t' {aka 'long long unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] start[2] = k; ^ [ 76%] Linking C executable minc2-hyper-test cd /<>/obj-arm-linux-gnueabi/testdir && /usr/bin/cmake -E cmake_link_script CMakeFiles/minc2-hyper-test.dir/link.txt --verbose=1 /usr/bin/arm-linux-gnueabi-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/minc2-hyper-test.dir/minc2-hyper-test.c.o -o minc2-hyper-test -Wl,-rpath,/<>/obj-arm-linux-gnueabi:/usr/lib/arm-linux-gnueabi/hdf5/serial ../libminc2.so.5.2.0 /usr/lib/arm-linux-gnueabi/hdf5/serial/libhdf5.so -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' [ 76%] Built target minc2-hyper-test make -f testdir/CMakeFiles/test_mconv.dir/build.make testdir/CMakeFiles/test_mconv.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/testdir /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/testdir /<>/obj-arm-linux-gnueabi/testdir/CMakeFiles/test_mconv.dir/DependInfo.cmake --color= Scanning dependencies of target test_mconv make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f testdir/CMakeFiles/test_mconv.dir/build.make testdir/CMakeFiles/test_mconv.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' [ 77%] Building C object testdir/CMakeFiles/test_mconv.dir/test_mconv.c.o cd /<>/obj-arm-linux-gnueabi/testdir && /usr/bin/arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2=1 -D_XOPEN_SOURCE=500 -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -o CMakeFiles/test_mconv.dir/test_mconv.c.o -c /<>/testdir/test_mconv.c [ 77%] Linking C executable test_mconv cd /<>/obj-arm-linux-gnueabi/testdir && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_mconv.dir/link.txt --verbose=1 /usr/bin/arm-linux-gnueabi-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/test_mconv.dir/test_mconv.c.o -o test_mconv -Wl,-rpath,/<>/obj-arm-linux-gnueabi:/usr/lib/arm-linux-gnueabi/hdf5/serial ../libminc2.so.5.2.0 /usr/lib/arm-linux-gnueabi/hdf5/serial/libhdf5.so -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' [ 77%] Built target test_mconv make -f testdir/CMakeFiles/mincapi.dir/build.make testdir/CMakeFiles/mincapi.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/testdir /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/testdir /<>/obj-arm-linux-gnueabi/testdir/CMakeFiles/mincapi.dir/DependInfo.cmake --color= Scanning dependencies of target mincapi make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f testdir/CMakeFiles/mincapi.dir/build.make testdir/CMakeFiles/mincapi.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' [ 77%] Building C object testdir/CMakeFiles/mincapi.dir/mincapi.c.o cd /<>/obj-arm-linux-gnueabi/testdir && /usr/bin/arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2=1 -D_XOPEN_SOURCE=500 -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -o CMakeFiles/mincapi.dir/mincapi.c.o -c /<>/testdir/mincapi.c /<>/testdir/mincapi.c: In function 'test3': /<>/testdir/mincapi.c:209:11: warning: conversion to 'size_t' {aka 'unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] total *= dims[i].length; ^~ /<>/testdir/mincapi.c: In function 'test4': /<>/testdir/mincapi.c:269:11: warning: conversion to 'size_t' {aka 'unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] total *= dims[i].length; ^~ /<>/testdir/mincapi.c:352:14: warning: conversion from 'int' to 'float' may change value [-Wconversion] float tmp = (i * 10000) + (j * 100) + k; ^ /<>/testdir/mincapi.c: In function 'test5': /<>/testdir/mincapi.c:409:9: warning: conversion to 'size_t' {aka 'unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] total *= dims[TST_X].length; ^~ /<>/testdir/mincapi.c:410:9: warning: conversion to 'size_t' {aka 'unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] total *= dims[TST_Y].length + YBOOST; ^~ /<>/testdir/mincapi.c:411:9: warning: conversion to 'size_t' {aka 'unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] total *= dims[TST_Z].length + ZBOOST; ^~ /<>/testdir/mincapi.c: In function 'test7': /<>/testdir/mincapi.c:644:11: warning: conversion to 'size_t' {aka 'unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] total *= dims[i].length; ^~ [ 78%] Linking C executable mincapi cd /<>/obj-arm-linux-gnueabi/testdir && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincapi.dir/link.txt --verbose=1 /usr/bin/arm-linux-gnueabi-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/mincapi.dir/mincapi.c.o -o mincapi -Wl,-rpath,/<>/obj-arm-linux-gnueabi:/usr/lib/arm-linux-gnueabi/hdf5/serial ../libminc2.so.5.2.0 /usr/lib/arm-linux-gnueabi/hdf5/serial/libhdf5.so -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' [ 78%] Built target mincapi make -f testdir/CMakeFiles/icv_dim.dir/build.make testdir/CMakeFiles/icv_dim.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/testdir /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/testdir /<>/obj-arm-linux-gnueabi/testdir/CMakeFiles/icv_dim.dir/DependInfo.cmake --color= Scanning dependencies of target icv_dim make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f testdir/CMakeFiles/icv_dim.dir/build.make testdir/CMakeFiles/icv_dim.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' [ 78%] Building C object testdir/CMakeFiles/icv_dim.dir/icv_dim.c.o cd /<>/obj-arm-linux-gnueabi/testdir && /usr/bin/arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2=1 -D_XOPEN_SOURCE=500 -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -o CMakeFiles/icv_dim.dir/icv_dim.c.o -c /<>/testdir/icv_dim.c [ 79%] Linking C executable icv_dim cd /<>/obj-arm-linux-gnueabi/testdir && /usr/bin/cmake -E cmake_link_script CMakeFiles/icv_dim.dir/link.txt --verbose=1 /usr/bin/arm-linux-gnueabi-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/icv_dim.dir/icv_dim.c.o -o icv_dim -Wl,-rpath,/<>/obj-arm-linux-gnueabi:/usr/lib/arm-linux-gnueabi/hdf5/serial ../libminc2.so.5.2.0 /usr/lib/arm-linux-gnueabi/hdf5/serial/libhdf5.so -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' [ 79%] Built target icv_dim make -f testdir/CMakeFiles/minc_tst.dir/build.make testdir/CMakeFiles/minc_tst.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/testdir /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/testdir /<>/obj-arm-linux-gnueabi/testdir/CMakeFiles/minc_tst.dir/DependInfo.cmake --color= Scanning dependencies of target minc_tst make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f testdir/CMakeFiles/minc_tst.dir/build.make testdir/CMakeFiles/minc_tst.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' [ 79%] Building C object testdir/CMakeFiles/minc_tst.dir/minc.c.o cd /<>/obj-arm-linux-gnueabi/testdir && /usr/bin/arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2=1 -D_XOPEN_SOURCE=500 -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -o CMakeFiles/minc_tst.dir/minc.c.o -c /<>/testdir/minc.c [ 80%] Linking C executable minc_tst cd /<>/obj-arm-linux-gnueabi/testdir && /usr/bin/cmake -E cmake_link_script CMakeFiles/minc_tst.dir/link.txt --verbose=1 /usr/bin/arm-linux-gnueabi-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/minc_tst.dir/minc.c.o -o minc_tst -Wl,-rpath,/<>/obj-arm-linux-gnueabi:/usr/lib/arm-linux-gnueabi/hdf5/serial ../libminc2.so.5.2.0 /usr/lib/arm-linux-gnueabi/hdf5/serial/libhdf5.so -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' [ 80%] Built target minc_tst make -f testdir/CMakeFiles/test_xfm.dir/build.make testdir/CMakeFiles/test_xfm.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/testdir /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/testdir /<>/obj-arm-linux-gnueabi/testdir/CMakeFiles/test_xfm.dir/DependInfo.cmake --color= Scanning dependencies of target test_xfm make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f testdir/CMakeFiles/test_xfm.dir/build.make testdir/CMakeFiles/test_xfm.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' [ 81%] Building C object testdir/CMakeFiles/test_xfm.dir/vio_xfm_test/test-xfm.c.o cd /<>/obj-arm-linux-gnueabi/testdir && /usr/bin/arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2=1 -D_XOPEN_SOURCE=500 -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -o CMakeFiles/test_xfm.dir/vio_xfm_test/test-xfm.c.o -c /<>/testdir/vio_xfm_test/test-xfm.c [ 81%] Linking C executable test_xfm cd /<>/obj-arm-linux-gnueabi/testdir && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_xfm.dir/link.txt --verbose=1 /usr/bin/arm-linux-gnueabi-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/test_xfm.dir/vio_xfm_test/test-xfm.c.o -o test_xfm -Wl,-rpath,/usr/lib/arm-linux-gnueabi/hdf5/serial:/<>/obj-arm-linux-gnueabi /usr/lib/arm-linux-gnueabi/hdf5/serial/libhdf5.so -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf ../libminc2.so.5.2.0 /usr/lib/arm-linux-gnueabi/hdf5/serial/libhdf5.so -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lrt -lm -ldl -lnetcdf -lm -ldl -lnetcdf make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' [ 81%] Built target test_xfm make -f testdir/CMakeFiles/minc_types.dir/build.make testdir/CMakeFiles/minc_types.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/testdir /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/testdir /<>/obj-arm-linux-gnueabi/testdir/CMakeFiles/minc_types.dir/DependInfo.cmake --color= Scanning dependencies of target minc_types make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f testdir/CMakeFiles/minc_types.dir/build.make testdir/CMakeFiles/minc_types.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' [ 81%] Building C object testdir/CMakeFiles/minc_types.dir/minc_types.c.o cd /<>/obj-arm-linux-gnueabi/testdir && /usr/bin/arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2=1 -D_XOPEN_SOURCE=500 -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -o CMakeFiles/minc_types.dir/minc_types.c.o -c /<>/testdir/minc_types.c [ 82%] Linking C executable minc_types cd /<>/obj-arm-linux-gnueabi/testdir && /usr/bin/cmake -E cmake_link_script CMakeFiles/minc_types.dir/link.txt --verbose=1 /usr/bin/arm-linux-gnueabi-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/minc_types.dir/minc_types.c.o -o minc_types -Wl,-rpath,/<>/obj-arm-linux-gnueabi:/usr/lib/arm-linux-gnueabi/hdf5/serial ../libminc2.so.5.2.0 /usr/lib/arm-linux-gnueabi/hdf5/serial/libhdf5.so -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' [ 82%] Built target minc_types make -f testdir/CMakeFiles/icv.dir/build.make testdir/CMakeFiles/icv.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/testdir /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/testdir /<>/obj-arm-linux-gnueabi/testdir/CMakeFiles/icv.dir/DependInfo.cmake --color= Scanning dependencies of target icv make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f testdir/CMakeFiles/icv.dir/build.make testdir/CMakeFiles/icv.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' [ 82%] Building C object testdir/CMakeFiles/icv.dir/icv.c.o cd /<>/obj-arm-linux-gnueabi/testdir && /usr/bin/arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2=1 -D_XOPEN_SOURCE=500 -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -o CMakeFiles/icv.dir/icv.c.o -c /<>/testdir/icv.c [ 83%] Linking C executable icv cd /<>/obj-arm-linux-gnueabi/testdir && /usr/bin/cmake -E cmake_link_script CMakeFiles/icv.dir/link.txt --verbose=1 /usr/bin/arm-linux-gnueabi-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/icv.dir/icv.c.o -o icv -Wl,-rpath,/<>/obj-arm-linux-gnueabi:/usr/lib/arm-linux-gnueabi/hdf5/serial ../libminc2.so.5.2.0 /usr/lib/arm-linux-gnueabi/hdf5/serial/libhdf5.so -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' [ 83%] Built target icv make -f testdir/CMakeFiles/icv_vec.dir/build.make testdir/CMakeFiles/icv_vec.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/testdir /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/testdir /<>/obj-arm-linux-gnueabi/testdir/CMakeFiles/icv_vec.dir/DependInfo.cmake --color= Scanning dependencies of target icv_vec make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f testdir/CMakeFiles/icv_vec.dir/build.make testdir/CMakeFiles/icv_vec.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' [ 84%] Building C object testdir/CMakeFiles/icv_vec.dir/icv_vec.c.o cd /<>/obj-arm-linux-gnueabi/testdir && /usr/bin/arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2=1 -D_XOPEN_SOURCE=500 -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -o CMakeFiles/icv_vec.dir/icv_vec.c.o -c /<>/testdir/icv_vec.c /<>/testdir/icv_vec.c: In function 'test_icv_vector': /<>/testdir/icv_vec.c:65:41: warning: conversion to 'unsigned int' from 'int' may change the sign of the result [-Wsign-conversion] short int *ivalue = malloc(N_ELEMENTS * sizeof(short int)); ^ /<>/testdir/icv_vec.c:66:38: warning: conversion to 'unsigned int' from 'int' may change the sign of the result [-Wsign-conversion] double *dvalue = malloc(N_ELEMENTS * sizeof(double)); ^ /<>/testdir/icv_vec.c:41:24: warning: conversion from 'int' to 'short int' may change value [-Wconversion] #define TVAL(z,y,x,v) ((z)*1000+(y)*100+(x)*10+(v)) ^ /<>/testdir/icv_vec.c:126:23: note: in expansion of macro 'TVAL' ivalue[c] = TVAL(i, j, k, v); ^~~~ [ 84%] Linking C executable icv_vec cd /<>/obj-arm-linux-gnueabi/testdir && /usr/bin/cmake -E cmake_link_script CMakeFiles/icv_vec.dir/link.txt --verbose=1 /usr/bin/arm-linux-gnueabi-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/icv_vec.dir/icv_vec.c.o -o icv_vec -Wl,-rpath,/<>/obj-arm-linux-gnueabi:/usr/lib/arm-linux-gnueabi/hdf5/serial ../libminc2.so.5.2.0 /usr/lib/arm-linux-gnueabi/hdf5/serial/libhdf5.so -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' [ 84%] Built target icv_vec make -f testdir/CMakeFiles/icv_dim1.dir/build.make testdir/CMakeFiles/icv_dim1.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/testdir /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/testdir /<>/obj-arm-linux-gnueabi/testdir/CMakeFiles/icv_dim1.dir/DependInfo.cmake --color= Scanning dependencies of target icv_dim1 make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f testdir/CMakeFiles/icv_dim1.dir/build.make testdir/CMakeFiles/icv_dim1.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' [ 84%] Building C object testdir/CMakeFiles/icv_dim1.dir/icv_dim1.c.o cd /<>/obj-arm-linux-gnueabi/testdir && /usr/bin/arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2=1 -D_XOPEN_SOURCE=500 -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -o CMakeFiles/icv_dim1.dir/icv_dim1.c.o -c /<>/testdir/icv_dim1.c [ 85%] Linking C executable icv_dim1 cd /<>/obj-arm-linux-gnueabi/testdir && /usr/bin/cmake -E cmake_link_script CMakeFiles/icv_dim1.dir/link.txt --verbose=1 /usr/bin/arm-linux-gnueabi-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/icv_dim1.dir/icv_dim1.c.o -o icv_dim1 -Wl,-rpath,/<>/obj-arm-linux-gnueabi:/usr/lib/arm-linux-gnueabi/hdf5/serial ../libminc2.so.5.2.0 /usr/lib/arm-linux-gnueabi/hdf5/serial/libhdf5.so -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' [ 85%] Built target icv_dim1 make -f testdir/CMakeFiles/icv_fillvalue.dir/build.make testdir/CMakeFiles/icv_fillvalue.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/testdir /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/testdir /<>/obj-arm-linux-gnueabi/testdir/CMakeFiles/icv_fillvalue.dir/DependInfo.cmake --color= Scanning dependencies of target icv_fillvalue make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f testdir/CMakeFiles/icv_fillvalue.dir/build.make testdir/CMakeFiles/icv_fillvalue.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' [ 85%] Building C object testdir/CMakeFiles/icv_fillvalue.dir/icv_fillvalue.c.o cd /<>/obj-arm-linux-gnueabi/testdir && /usr/bin/arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2=1 -D_XOPEN_SOURCE=500 -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -o CMakeFiles/icv_fillvalue.dir/icv_fillvalue.c.o -c /<>/testdir/icv_fillvalue.c [ 85%] Linking C executable icv_fillvalue cd /<>/obj-arm-linux-gnueabi/testdir && /usr/bin/cmake -E cmake_link_script CMakeFiles/icv_fillvalue.dir/link.txt --verbose=1 /usr/bin/arm-linux-gnueabi-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/icv_fillvalue.dir/icv_fillvalue.c.o -o icv_fillvalue -Wl,-rpath,/<>/obj-arm-linux-gnueabi:/usr/lib/arm-linux-gnueabi/hdf5/serial ../libminc2.so.5.2.0 /usr/lib/arm-linux-gnueabi/hdf5/serial/libhdf5.so -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' [ 85%] Built target icv_fillvalue make -f testdir/CMakeFiles/create_grid_xfm.dir/build.make testdir/CMakeFiles/create_grid_xfm.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/testdir /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/testdir /<>/obj-arm-linux-gnueabi/testdir/CMakeFiles/create_grid_xfm.dir/DependInfo.cmake --color= Scanning dependencies of target create_grid_xfm make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f testdir/CMakeFiles/create_grid_xfm.dir/build.make testdir/CMakeFiles/create_grid_xfm.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' [ 86%] Building C object testdir/CMakeFiles/create_grid_xfm.dir/create_grid_xfm.c.o cd /<>/obj-arm-linux-gnueabi/testdir && /usr/bin/arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2=1 -D_XOPEN_SOURCE=500 -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -o CMakeFiles/create_grid_xfm.dir/create_grid_xfm.c.o -c /<>/testdir/create_grid_xfm.c [ 86%] Linking C executable create_grid_xfm cd /<>/obj-arm-linux-gnueabi/testdir && /usr/bin/cmake -E cmake_link_script CMakeFiles/create_grid_xfm.dir/link.txt --verbose=1 /usr/bin/arm-linux-gnueabi-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/create_grid_xfm.dir/create_grid_xfm.c.o -o create_grid_xfm -Wl,-rpath,/usr/lib/arm-linux-gnueabi/hdf5/serial:/<>/obj-arm-linux-gnueabi /usr/lib/arm-linux-gnueabi/hdf5/serial/libhdf5.so -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf ../libminc2.so.5.2.0 /usr/lib/arm-linux-gnueabi/hdf5/serial/libhdf5.so -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lrt -lm -ldl -lnetcdf -lm -ldl -lnetcdf make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' [ 86%] Built target create_grid_xfm make -f testdir/CMakeFiles/verify_xfm.dir/build.make testdir/CMakeFiles/verify_xfm.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/testdir /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/testdir /<>/obj-arm-linux-gnueabi/testdir/CMakeFiles/verify_xfm.dir/DependInfo.cmake --color= Scanning dependencies of target verify_xfm make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f testdir/CMakeFiles/verify_xfm.dir/build.make testdir/CMakeFiles/verify_xfm.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' [ 86%] Building C object testdir/CMakeFiles/verify_xfm.dir/vio_xfm_test/verify_xfm.c.o cd /<>/obj-arm-linux-gnueabi/testdir && /usr/bin/arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2=1 -D_XOPEN_SOURCE=500 -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -o CMakeFiles/verify_xfm.dir/vio_xfm_test/verify_xfm.c.o -c /<>/testdir/vio_xfm_test/verify_xfm.c [ 87%] Linking C executable verify_xfm cd /<>/obj-arm-linux-gnueabi/testdir && /usr/bin/cmake -E cmake_link_script CMakeFiles/verify_xfm.dir/link.txt --verbose=1 /usr/bin/arm-linux-gnueabi-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/verify_xfm.dir/vio_xfm_test/verify_xfm.c.o -o verify_xfm -Wl,-rpath,/usr/lib/arm-linux-gnueabi/hdf5/serial:/<>/obj-arm-linux-gnueabi /usr/lib/arm-linux-gnueabi/hdf5/serial/libhdf5.so -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf ../libminc2.so.5.2.0 /usr/lib/arm-linux-gnueabi/hdf5/serial/libhdf5.so -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lrt -lm -ldl -lnetcdf -lm -ldl -lnetcdf make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' [ 87%] Built target verify_xfm make -f testdir/CMakeFiles/minc2-label-test.dir/build.make testdir/CMakeFiles/minc2-label-test.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/testdir /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/testdir /<>/obj-arm-linux-gnueabi/testdir/CMakeFiles/minc2-label-test.dir/DependInfo.cmake --color= Scanning dependencies of target minc2-label-test make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f testdir/CMakeFiles/minc2-label-test.dir/build.make testdir/CMakeFiles/minc2-label-test.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' [ 88%] Building C object testdir/CMakeFiles/minc2-label-test.dir/minc2-label-test.c.o cd /<>/obj-arm-linux-gnueabi/testdir && /usr/bin/arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2=1 -D_XOPEN_SOURCE=500 -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -o CMakeFiles/minc2-label-test.dir/minc2-label-test.c.o -c /<>/testdir/minc2-label-test.c /<>/testdir/minc2-label-test.c: In function 'create_label_image': /<>/testdir/minc2-label-test.c:110:21: warning: conversion to 'misize_t' {aka 'long long unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] coords[0] = i; ^ /<>/testdir/minc2-label-test.c:111:21: warning: conversion to 'misize_t' {aka 'long long unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] coords[1] = j; ^ /<>/testdir/minc2-label-test.c:112:21: warning: conversion to 'misize_t' {aka 'long long unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] coords[2] = k; ^ [ 88%] Linking C executable minc2-label-test cd /<>/obj-arm-linux-gnueabi/testdir && /usr/bin/cmake -E cmake_link_script CMakeFiles/minc2-label-test.dir/link.txt --verbose=1 /usr/bin/arm-linux-gnueabi-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/minc2-label-test.dir/minc2-label-test.c.o -o minc2-label-test -Wl,-rpath,/<>/obj-arm-linux-gnueabi:/usr/lib/arm-linux-gnueabi/hdf5/serial ../libminc2.so.5.2.0 /usr/lib/arm-linux-gnueabi/hdf5/serial/libhdf5.so -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' [ 88%] Built target minc2-label-test make -f testdir/CMakeFiles/minc2-convert-test.dir/build.make testdir/CMakeFiles/minc2-convert-test.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/testdir /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/testdir /<>/obj-arm-linux-gnueabi/testdir/CMakeFiles/minc2-convert-test.dir/DependInfo.cmake --color= Scanning dependencies of target minc2-convert-test make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f testdir/CMakeFiles/minc2-convert-test.dir/build.make testdir/CMakeFiles/minc2-convert-test.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' [ 89%] Building C object testdir/CMakeFiles/minc2-convert-test.dir/minc2-convert-test.c.o cd /<>/obj-arm-linux-gnueabi/testdir && /usr/bin/arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2=1 -D_XOPEN_SOURCE=500 -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -o CMakeFiles/minc2-convert-test.dir/minc2-convert-test.c.o -c /<>/testdir/minc2-convert-test.c /<>/testdir/minc2-convert-test.c: In function 'main': /<>/testdir/minc2-convert-test.c:97:29: warning: conversion to 'misize_t' {aka 'long long unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] coords[0] = i; ^ /<>/testdir/minc2-convert-test.c:98:29: warning: conversion to 'misize_t' {aka 'long long unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] coords[1] = j; ^ /<>/testdir/minc2-convert-test.c:99:29: warning: conversion to 'misize_t' {aka 'long long unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] coords[2] = k; ^ /<>/testdir/minc2-convert-test.c:101:28: warning: conversion from 'misize_t' {aka 'long long unsigned int'} to 'double' may change value [-Wconversion] voxel[0] = coords[0]; ^~~~~~ /<>/testdir/minc2-convert-test.c:102:28: warning: conversion from 'misize_t' {aka 'long long unsigned int'} to 'double' may change value [-Wconversion] voxel[1] = coords[1]; ^~~~~~ /<>/testdir/minc2-convert-test.c:103:28: warning: conversion from 'misize_t' {aka 'long long unsigned int'} to 'double' may change value [-Wconversion] voxel[2] = coords[2]; ^~~~~~ [ 89%] Linking C executable minc2-convert-test cd /<>/obj-arm-linux-gnueabi/testdir && /usr/bin/cmake -E cmake_link_script CMakeFiles/minc2-convert-test.dir/link.txt --verbose=1 /usr/bin/arm-linux-gnueabi-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/minc2-convert-test.dir/minc2-convert-test.c.o -o minc2-convert-test -Wl,-rpath,/<>/obj-arm-linux-gnueabi:/usr/lib/arm-linux-gnueabi/hdf5/serial ../libminc2.so.5.2.0 /usr/lib/arm-linux-gnueabi/hdf5/serial/libhdf5.so -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' [ 89%] Built target minc2-convert-test make -f testdir/CMakeFiles/minc2-datatype-test.dir/build.make testdir/CMakeFiles/minc2-datatype-test.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/testdir /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/testdir /<>/obj-arm-linux-gnueabi/testdir/CMakeFiles/minc2-datatype-test.dir/DependInfo.cmake --color= Scanning dependencies of target minc2-datatype-test make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f testdir/CMakeFiles/minc2-datatype-test.dir/build.make testdir/CMakeFiles/minc2-datatype-test.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' [ 89%] Building C object testdir/CMakeFiles/minc2-datatype-test.dir/minc2-datatype-test.c.o cd /<>/obj-arm-linux-gnueabi/testdir && /usr/bin/arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2=1 -D_XOPEN_SOURCE=500 -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -o CMakeFiles/minc2-datatype-test.dir/minc2-datatype-test.c.o -c /<>/testdir/minc2-datatype-test.c [ 90%] Linking C executable minc2-datatype-test cd /<>/obj-arm-linux-gnueabi/testdir && /usr/bin/cmake -E cmake_link_script CMakeFiles/minc2-datatype-test.dir/link.txt --verbose=1 /usr/bin/arm-linux-gnueabi-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/minc2-datatype-test.dir/minc2-datatype-test.c.o -o minc2-datatype-test -Wl,-rpath,/<>/obj-arm-linux-gnueabi:/usr/lib/arm-linux-gnueabi/hdf5/serial ../libminc2.so.5.2.0 /usr/lib/arm-linux-gnueabi/hdf5/serial/libhdf5.so -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' [ 90%] Built target minc2-datatype-test make -f testdir/CMakeFiles/minc2-large-attribute.dir/build.make testdir/CMakeFiles/minc2-large-attribute.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/testdir /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/testdir /<>/obj-arm-linux-gnueabi/testdir/CMakeFiles/minc2-large-attribute.dir/DependInfo.cmake --color= Scanning dependencies of target minc2-large-attribute make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f testdir/CMakeFiles/minc2-large-attribute.dir/build.make testdir/CMakeFiles/minc2-large-attribute.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' [ 91%] Building C object testdir/CMakeFiles/minc2-large-attribute.dir/minc2-large-attribute.c.o cd /<>/obj-arm-linux-gnueabi/testdir && /usr/bin/arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2=1 -D_XOPEN_SOURCE=500 -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -o CMakeFiles/minc2-large-attribute.dir/minc2-large-attribute.c.o -c /<>/testdir/minc2-large-attribute.c /<>/testdir/minc2-large-attribute.c: In function 'create_3D_image': /<>/testdir/minc2-large-attribute.c:84:16: warning: conversion to 'misize_t' {aka 'long long unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] start[0] = i; ^ /<>/testdir/minc2-large-attribute.c:90:20: warning: conversion to 'size_t' {aka 'unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] attribute=malloc(attribute_size); ^~~~~~~~~~~~~~ /<>/testdir/minc2-large-attribute.c:91:38: warning: conversion to 'size_t' {aka 'unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] memset(attribute,'Z',attribute_size-1); ~~~~~~~~~~~~~~^~ /<>/testdir/minc2-large-attribute.c:94:55: warning: conversion to 'size_t' {aka 'unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] miset_attr_values(hvol,MI_TYPE_STRING,"test","test",attribute_size,attribute); ^~~~~~~~~~~~~~ [ 91%] Linking C executable minc2-large-attribute cd /<>/obj-arm-linux-gnueabi/testdir && /usr/bin/cmake -E cmake_link_script CMakeFiles/minc2-large-attribute.dir/link.txt --verbose=1 /usr/bin/arm-linux-gnueabi-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/minc2-large-attribute.dir/minc2-large-attribute.c.o -o minc2-large-attribute -Wl,-rpath,/<>/obj-arm-linux-gnueabi:/usr/lib/arm-linux-gnueabi/hdf5/serial ../libminc2.so.5.2.0 /usr/lib/arm-linux-gnueabi/hdf5/serial/libhdf5.so -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' [ 91%] Built target minc2-large-attribute make -f testdir/CMakeFiles/minc2-full-test.dir/build.make testdir/CMakeFiles/minc2-full-test.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/testdir /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/testdir /<>/obj-arm-linux-gnueabi/testdir/CMakeFiles/minc2-full-test.dir/DependInfo.cmake --color= Scanning dependencies of target minc2-full-test make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f testdir/CMakeFiles/minc2-full-test.dir/build.make testdir/CMakeFiles/minc2-full-test.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' [ 91%] Building C object testdir/CMakeFiles/minc2-full-test.dir/minc2-full-test.c.o cd /<>/obj-arm-linux-gnueabi/testdir && /usr/bin/arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2=1 -D_XOPEN_SOURCE=500 -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -o CMakeFiles/minc2-full-test.dir/minc2-full-test.c.o -c /<>/testdir/minc2-full-test.c /<>/testdir/minc2-full-test.c: In function 'test1': /<>/testdir/minc2-full-test.c:111:29: warning: conversion to 'misize_t' {aka 'long long unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] coords[0] = i; ^ /<>/testdir/minc2-full-test.c:112:29: warning: conversion to 'misize_t' {aka 'long long unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] coords[1] = j; ^ /<>/testdir/minc2-full-test.c:113:29: warning: conversion to 'misize_t' {aka 'long long unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] coords[2] = k; ^ /<>/testdir/minc2-full-test.c: In function 'test2': /<>/testdir/minc2-full-test.c:227:29: warning: conversion to 'misize_t' {aka 'long long unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] coords[0] = i; ^ /<>/testdir/minc2-full-test.c:228:29: warning: conversion to 'misize_t' {aka 'long long unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] coords[1] = j; ^ /<>/testdir/minc2-full-test.c:229:29: warning: conversion to 'misize_t' {aka 'long long unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] coords[2] = k; ^ /<>/testdir/minc2-full-test.c:231:30: warning: conversion from 'int' to 'float' may change value [-Wconversion] fcmpl.real = (i * 100) + j; ^ /<>/testdir/minc2-full-test.c:232:30: warning: conversion from 'int' to 'float' may change value [-Wconversion] fcmpl.imag = k; ^ /<>/testdir/minc2-full-test.c:249:29: warning: conversion to 'misize_t' {aka 'long long unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] coords[0] = i; ^ /<>/testdir/minc2-full-test.c:250:29: warning: conversion to 'misize_t' {aka 'long long unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] coords[1] = j; ^ /<>/testdir/minc2-full-test.c:251:29: warning: conversion to 'misize_t' {aka 'long long unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] coords[2] = k; ^ [ 92%] Linking C executable minc2-full-test cd /<>/obj-arm-linux-gnueabi/testdir && /usr/bin/cmake -E cmake_link_script CMakeFiles/minc2-full-test.dir/link.txt --verbose=1 /usr/bin/arm-linux-gnueabi-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/minc2-full-test.dir/minc2-full-test.c.o -o minc2-full-test -Wl,-rpath,/<>/obj-arm-linux-gnueabi:/usr/lib/arm-linux-gnueabi/hdf5/serial ../libminc2.so.5.2.0 /usr/lib/arm-linux-gnueabi/hdf5/serial/libhdf5.so -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' [ 92%] Built target minc2-full-test make -f testdir/CMakeFiles/test_arg_parse.dir/build.make testdir/CMakeFiles/test_arg_parse.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/testdir /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/testdir /<>/obj-arm-linux-gnueabi/testdir/CMakeFiles/test_arg_parse.dir/DependInfo.cmake --color= Scanning dependencies of target test_arg_parse make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f testdir/CMakeFiles/test_arg_parse.dir/build.make testdir/CMakeFiles/test_arg_parse.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' [ 93%] Building C object testdir/CMakeFiles/test_arg_parse.dir/test_arg_parse.c.o cd /<>/obj-arm-linux-gnueabi/testdir && /usr/bin/arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2=1 -D_XOPEN_SOURCE=500 -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -o CMakeFiles/test_arg_parse.dir/test_arg_parse.c.o -c /<>/testdir/test_arg_parse.c [ 93%] Linking C executable test_arg_parse cd /<>/obj-arm-linux-gnueabi/testdir && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_arg_parse.dir/link.txt --verbose=1 /usr/bin/arm-linux-gnueabi-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/test_arg_parse.dir/test_arg_parse.c.o -o test_arg_parse -Wl,-rpath,/<>/obj-arm-linux-gnueabi:/usr/lib/arm-linux-gnueabi/hdf5/serial ../libminc2.so.5.2.0 /usr/lib/arm-linux-gnueabi/hdf5/serial/libhdf5.so -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' [ 93%] Built target test_arg_parse make -f testdir/CMakeFiles/minc2-vector_dimension-test.dir/build.make testdir/CMakeFiles/minc2-vector_dimension-test.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/testdir /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/testdir /<>/obj-arm-linux-gnueabi/testdir/CMakeFiles/minc2-vector_dimension-test.dir/DependInfo.cmake --color= Scanning dependencies of target minc2-vector_dimension-test make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f testdir/CMakeFiles/minc2-vector_dimension-test.dir/build.make testdir/CMakeFiles/minc2-vector_dimension-test.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' [ 94%] Building C object testdir/CMakeFiles/minc2-vector_dimension-test.dir/minc2-vector_dimension-test.c.o cd /<>/obj-arm-linux-gnueabi/testdir && /usr/bin/arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2=1 -D_XOPEN_SOURCE=500 -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -o CMakeFiles/minc2-vector_dimension-test.dir/minc2-vector_dimension-test.c.o -c /<>/testdir/minc2-vector_dimension-test.c /<>/testdir/minc2-vector_dimension-test.c: In function 'main': /<>/testdir/minc2-vector_dimension-test.c:131:17: warning: conversion to 'misize_t' {aka 'long long unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] coords[3] = i; ^ /<>/testdir/minc2-vector_dimension-test.c:166:17: warning: conversion to 'misize_t' {aka 'long long unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] coords[0] = i; ^ [ 94%] Linking C executable minc2-vector_dimension-test cd /<>/obj-arm-linux-gnueabi/testdir && /usr/bin/cmake -E cmake_link_script CMakeFiles/minc2-vector_dimension-test.dir/link.txt --verbose=1 /usr/bin/arm-linux-gnueabi-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/minc2-vector_dimension-test.dir/minc2-vector_dimension-test.c.o -o minc2-vector_dimension-test -Wl,-rpath,/<>/obj-arm-linux-gnueabi:/usr/lib/arm-linux-gnueabi/hdf5/serial ../libminc2.so.5.2.0 /usr/lib/arm-linux-gnueabi/hdf5/serial/libhdf5.so -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' [ 94%] Built target minc2-vector_dimension-test make -f testdir/CMakeFiles/minc2-hyper-test-2.dir/build.make testdir/CMakeFiles/minc2-hyper-test-2.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/testdir /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/testdir /<>/obj-arm-linux-gnueabi/testdir/CMakeFiles/minc2-hyper-test-2.dir/DependInfo.cmake --color= Scanning dependencies of target minc2-hyper-test-2 make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f testdir/CMakeFiles/minc2-hyper-test-2.dir/build.make testdir/CMakeFiles/minc2-hyper-test-2.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' [ 95%] Building C object testdir/CMakeFiles/minc2-hyper-test-2.dir/minc2-hyper-test-2.c.o cd /<>/obj-arm-linux-gnueabi/testdir && /usr/bin/arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2=1 -D_XOPEN_SOURCE=500 -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -o CMakeFiles/minc2-hyper-test-2.dir/minc2-hyper-test-2.c.o -c /<>/testdir/minc2-hyper-test-2.c /<>/testdir/minc2-hyper-test-2.c: In function 'create_test_file': /<>/testdir/minc2-hyper-test-2.c:72:16: warning: conversion to 'misize_t' {aka 'long long unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] start[0] = i; ^ /<>/testdir/minc2-hyper-test-2.c: In function 'main': /<>/testdir/minc2-hyper-test-2.c:145:65: warning: conversion from 'misize_t' {aka 'long long unsigned int'} to 'size_t' {aka 'unsigned int'} may change value [-Wconversion] buffer = ( double * ) malloc ( count[0] * count[1] * count[2] * sizeof ( double ) ); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ [ 95%] Linking C executable minc2-hyper-test-2 cd /<>/obj-arm-linux-gnueabi/testdir && /usr/bin/cmake -E cmake_link_script CMakeFiles/minc2-hyper-test-2.dir/link.txt --verbose=1 /usr/bin/arm-linux-gnueabi-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/minc2-hyper-test-2.dir/minc2-hyper-test-2.c.o -o minc2-hyper-test-2 -Wl,-rpath,/<>/obj-arm-linux-gnueabi:/usr/lib/arm-linux-gnueabi/hdf5/serial ../libminc2.so.5.2.0 /usr/lib/arm-linux-gnueabi/hdf5/serial/libhdf5.so -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' [ 95%] Built target minc2-hyper-test-2 make -f testdir/CMakeFiles/minc2-multires-test.dir/build.make testdir/CMakeFiles/minc2-multires-test.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/testdir /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/testdir /<>/obj-arm-linux-gnueabi/testdir/CMakeFiles/minc2-multires-test.dir/DependInfo.cmake --color= Scanning dependencies of target minc2-multires-test make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f testdir/CMakeFiles/minc2-multires-test.dir/build.make testdir/CMakeFiles/minc2-multires-test.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' [ 95%] Building C object testdir/CMakeFiles/minc2-multires-test.dir/minc2-multires-test.c.o cd /<>/obj-arm-linux-gnueabi/testdir && /usr/bin/arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2=1 -D_XOPEN_SOURCE=500 -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -o CMakeFiles/minc2-multires-test.dir/minc2-multires-test.c.o -c /<>/testdir/minc2-multires-test.c /<>/testdir/minc2-multires-test.c: In function 'main': /<>/testdir/minc2-multires-test.c:79:29: warning: conversion to 'misize_t' {aka 'long long unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] coords[0] = i; ^ /<>/testdir/minc2-multires-test.c:80:29: warning: conversion to 'misize_t' {aka 'long long unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] coords[1] = j; ^ /<>/testdir/minc2-multires-test.c:81:29: warning: conversion to 'misize_t' {aka 'long long unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] coords[2] = k; ^ /<>/testdir/minc2-multires-test.c:83:25: warning: conversion to 'unsigned int' from 'int' may change the sign of the result [-Wsign-conversion] voxel = i*10000 + j*100 + k; ^ [ 96%] Linking C executable minc2-multires-test cd /<>/obj-arm-linux-gnueabi/testdir && /usr/bin/cmake -E cmake_link_script CMakeFiles/minc2-multires-test.dir/link.txt --verbose=1 /usr/bin/arm-linux-gnueabi-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/minc2-multires-test.dir/minc2-multires-test.c.o -o minc2-multires-test -Wl,-rpath,/<>/obj-arm-linux-gnueabi:/usr/lib/arm-linux-gnueabi/hdf5/serial ../libminc2.so.5.2.0 /usr/lib/arm-linux-gnueabi/hdf5/serial/libhdf5.so -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' [ 96%] Built target minc2-multires-test make -f testdir/CMakeFiles/multidim_test.dir/build.make testdir/CMakeFiles/multidim_test.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/testdir /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/testdir /<>/obj-arm-linux-gnueabi/testdir/CMakeFiles/multidim_test.dir/DependInfo.cmake --color= Scanning dependencies of target multidim_test make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f testdir/CMakeFiles/multidim_test.dir/build.make testdir/CMakeFiles/multidim_test.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' [ 96%] Building C object testdir/CMakeFiles/multidim_test.dir/multidim_test.c.o cd /<>/obj-arm-linux-gnueabi/testdir && /usr/bin/arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2=1 -D_XOPEN_SOURCE=500 -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -o CMakeFiles/multidim_test.dir/multidim_test.c.o -c /<>/testdir/multidim_test.c [ 96%] Linking C executable multidim_test cd /<>/obj-arm-linux-gnueabi/testdir && /usr/bin/cmake -E cmake_link_script CMakeFiles/multidim_test.dir/link.txt --verbose=1 /usr/bin/arm-linux-gnueabi-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/multidim_test.dir/multidim_test.c.o -o multidim_test -Wl,-rpath,/<>/obj-arm-linux-gnueabi:/usr/lib/arm-linux-gnueabi/hdf5/serial ../libminc2.so.5.2.0 /usr/lib/arm-linux-gnueabi/hdf5/serial/libhdf5.so -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' [ 96%] Built target multidim_test make -f testdir/CMakeFiles/minc2-slice-test.dir/build.make testdir/CMakeFiles/minc2-slice-test.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/testdir /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/testdir /<>/obj-arm-linux-gnueabi/testdir/CMakeFiles/minc2-slice-test.dir/DependInfo.cmake --color= Scanning dependencies of target minc2-slice-test make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f testdir/CMakeFiles/minc2-slice-test.dir/build.make testdir/CMakeFiles/minc2-slice-test.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' [ 97%] Building C object testdir/CMakeFiles/minc2-slice-test.dir/minc2-slice-test.c.o cd /<>/obj-arm-linux-gnueabi/testdir && /usr/bin/arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2=1 -D_XOPEN_SOURCE=500 -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -o CMakeFiles/minc2-slice-test.dir/minc2-slice-test.c.o -c /<>/testdir/minc2-slice-test.c /<>/testdir/minc2-slice-test.c: In function 'main': /<>/testdir/minc2-slice-test.c:29:21: warning: conversion to 'misize_t' {aka 'long long unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] coords[0] = i; /*Z*/ ^ /<>/testdir/minc2-slice-test.c:30:21: warning: conversion to 'misize_t' {aka 'long long unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] coords[1] = rand()%CX; /*X*/ ^~~~ /<>/testdir/minc2-slice-test.c:31:21: warning: conversion to 'misize_t' {aka 'long long unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] coords[2] = rand()%CY; /*Y*/ ^~~~ [ 97%] Linking C executable minc2-slice-test cd /<>/obj-arm-linux-gnueabi/testdir && /usr/bin/cmake -E cmake_link_script CMakeFiles/minc2-slice-test.dir/link.txt --verbose=1 /usr/bin/arm-linux-gnueabi-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/minc2-slice-test.dir/minc2-slice-test.c.o -o minc2-slice-test -Wl,-rpath,/<>/obj-arm-linux-gnueabi:/usr/lib/arm-linux-gnueabi/hdf5/serial ../libminc2.so.5.2.0 /usr/lib/arm-linux-gnueabi/hdf5/serial/libhdf5.so -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' [ 97%] Built target minc2-slice-test make -f testdir/CMakeFiles/icv_range.dir/build.make testdir/CMakeFiles/icv_range.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/testdir /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/testdir /<>/obj-arm-linux-gnueabi/testdir/CMakeFiles/icv_range.dir/DependInfo.cmake --color= Scanning dependencies of target icv_range make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f testdir/CMakeFiles/icv_range.dir/build.make testdir/CMakeFiles/icv_range.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' [ 98%] Building C object testdir/CMakeFiles/icv_range.dir/icv_range.c.o cd /<>/obj-arm-linux-gnueabi/testdir && /usr/bin/arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2=1 -D_XOPEN_SOURCE=500 -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -o CMakeFiles/icv_range.dir/icv_range.c.o -c /<>/testdir/icv_range.c [ 98%] Linking C executable icv_range cd /<>/obj-arm-linux-gnueabi/testdir && /usr/bin/cmake -E cmake_link_script CMakeFiles/icv_range.dir/link.txt --verbose=1 /usr/bin/arm-linux-gnueabi-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/icv_range.dir/icv_range.c.o -o icv_range -Wl,-rpath,/<>/obj-arm-linux-gnueabi:/usr/lib/arm-linux-gnueabi/hdf5/serial ../libminc2.so.5.2.0 /usr/lib/arm-linux-gnueabi/hdf5/serial/libhdf5.so -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' [ 98%] Built target icv_range make -f testdir/CMakeFiles/minc2-valid-test.dir/build.make testdir/CMakeFiles/minc2-valid-test.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/testdir /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/testdir /<>/obj-arm-linux-gnueabi/testdir/CMakeFiles/minc2-valid-test.dir/DependInfo.cmake --color= Scanning dependencies of target minc2-valid-test make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f testdir/CMakeFiles/minc2-valid-test.dir/build.make testdir/CMakeFiles/minc2-valid-test.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' [ 99%] Building C object testdir/CMakeFiles/minc2-valid-test.dir/minc2-valid-test.c.o cd /<>/obj-arm-linux-gnueabi/testdir && /usr/bin/arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2=1 -D_XOPEN_SOURCE=500 -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -o CMakeFiles/minc2-valid-test.dir/minc2-valid-test.c.o -c /<>/testdir/minc2-valid-test.c [ 99%] Linking C executable minc2-valid-test cd /<>/obj-arm-linux-gnueabi/testdir && /usr/bin/cmake -E cmake_link_script CMakeFiles/minc2-valid-test.dir/link.txt --verbose=1 /usr/bin/arm-linux-gnueabi-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/minc2-valid-test.dir/minc2-valid-test.c.o -o minc2-valid-test -Wl,-rpath,/<>/obj-arm-linux-gnueabi:/usr/lib/arm-linux-gnueabi/hdf5/serial ../libminc2.so.5.2.0 /usr/lib/arm-linux-gnueabi/hdf5/serial/libhdf5.so -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' [ 99%] Built target minc2-valid-test make -f testdir/CMakeFiles/minc_conversion.dir/build.make testdir/CMakeFiles/minc_conversion.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/testdir /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/testdir /<>/obj-arm-linux-gnueabi/testdir/CMakeFiles/minc_conversion.dir/DependInfo.cmake --color= Scanning dependencies of target minc_conversion make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f testdir/CMakeFiles/minc_conversion.dir/build.make testdir/CMakeFiles/minc_conversion.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' [ 99%] Building C object testdir/CMakeFiles/minc_conversion.dir/minc_conversion.c.o cd /<>/obj-arm-linux-gnueabi/testdir && /usr/bin/arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2=1 -D_XOPEN_SOURCE=500 -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -o CMakeFiles/minc_conversion.dir/minc_conversion.c.o -c /<>/testdir/minc_conversion.c /<>/testdir/minc_conversion.c: In function 'test2': /<>/testdir/minc_conversion.c:156:24: warning: conversion from 'int' to 'float' may change value [-Wconversion] float tmp = (i * 10000.0f) + (j * 100.0f) + k; ^ /<>/testdir/minc_conversion.c:156:41: warning: conversion from 'int' to 'float' may change value [-Wconversion] float tmp = (i * 10000.0f) + (j * 100.0f) + k; ^ /<>/testdir/minc_conversion.c:156:51: warning: conversion from 'int' to 'float' may change value [-Wconversion] float tmp = (i * 10000.0f) + (j * 100.0f) + k; ^ /<>/testdir/minc_conversion.c: In function 'test3': /<>/testdir/minc_conversion.c:192:11: warning: conversion to 'size_t' {aka 'unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] total *= dims[i].length; ^~ /<>/testdir/minc_conversion.c:263:24: warning: conversion from 'int' to 'float' may change value [-Wconversion] float tmp = (i * 10000.0f) + (j * 100.0f) + k; ^ /<>/testdir/minc_conversion.c:263:41: warning: conversion from 'int' to 'float' may change value [-Wconversion] float tmp = (i * 10000.0f) + (j * 100.0f) + k; ^ /<>/testdir/minc_conversion.c:263:51: warning: conversion from 'int' to 'float' may change value [-Wconversion] float tmp = (i * 10000.0f) + (j * 100.0f) + k; ^ /<>/testdir/minc_conversion.c: In function 'test4': /<>/testdir/minc_conversion.c:351:62: warning: conversion from 'misize_t' {aka 'long long unsigned int'} to 'size_t' {aka 'unsigned int'} may change value [-Wconversion] buffer=flt_ptr=malloc(sizeof(float)*my_sizes[0]*my_sizes[1]*my_sizes[2]); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /<>/testdir/minc_conversion.c:368:21: warning: conversion from 'misize_t' {aka 'long long unsigned int'} to 'float' may change value [-Wconversion] float tmp = (i * 10000) + (j * 100) + k; ^ [100%] Linking C executable minc_conversion cd /<>/obj-arm-linux-gnueabi/testdir && /usr/bin/cmake -E cmake_link_script CMakeFiles/minc_conversion.dir/link.txt --verbose=1 /usr/bin/arm-linux-gnueabi-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/minc_conversion.dir/minc_conversion.c.o -o minc_conversion -Wl,-rpath,/<>/obj-arm-linux-gnueabi:/usr/lib/arm-linux-gnueabi/hdf5/serial ../libminc2.so.5.2.0 /usr/lib/arm-linux-gnueabi/hdf5/serial/libhdf5.so -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' [100%] Built target minc_conversion make -f testdir/CMakeFiles/minc2-read-rgb.dir/build.make testdir/CMakeFiles/minc2-read-rgb.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/testdir /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/testdir /<>/obj-arm-linux-gnueabi/testdir/CMakeFiles/minc2-read-rgb.dir/DependInfo.cmake --color= Scanning dependencies of target minc2-read-rgb make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f testdir/CMakeFiles/minc2-read-rgb.dir/build.make testdir/CMakeFiles/minc2-read-rgb.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' [100%] Building C object testdir/CMakeFiles/minc2-read-rgb.dir/minc2-read-rgb.c.o cd /<>/obj-arm-linux-gnueabi/testdir && /usr/bin/arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2=1 -D_XOPEN_SOURCE=500 -I/<> -I/<>/obj-arm-linux-gnueabi -I/<>/libcommon -I/<>/libsrc2 -I/<>/libsrc -I/<>/volume_io/Include -I/<>/ezminc -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -o CMakeFiles/minc2-read-rgb.dir/minc2-read-rgb.c.o -c /<>/testdir/minc2-read-rgb.c /<>/testdir/minc2-read-rgb.c: In function 'calculate_mean_f': /<>/testdir/minc2-read-rgb.c:23:13: warning: conversion from 'misize_t' {aka 'long long unsigned int'} to 'double' may change value [-Wconversion] return avg/length; ^ /<>/testdir/minc2-read-rgb.c: In function 'calculate_mean_s': /<>/testdir/minc2-read-rgb.c:33:13: warning: conversion from 'misize_t' {aka 'long long unsigned int'} to 'double' may change value [-Wconversion] return avg/length; ^ /<>/testdir/minc2-read-rgb.c: In function 'calculate_mean_d': /<>/testdir/minc2-read-rgb.c:43:13: warning: conversion from 'misize_t' {aka 'long long unsigned int'} to 'double' may change value [-Wconversion] return avg/length; ^ /<>/testdir/minc2-read-rgb.c: In function 'main': /<>/testdir/minc2-read-rgb.c:116:37: warning: conversion to 'unsigned int' from 'int' may change the sign of the result [-Wsign-conversion] dim= malloc(sizeof(midimhandle_t)*ndim); ^ /<>/testdir/minc2-read-rgb.c:117:32: warning: conversion to 'unsigned int' from 'int' may change the sign of the result [-Wsign-conversion] sizes=malloc(sizeof(misize_t)*ndim); ^ /<>/testdir/minc2-read-rgb.c:118:31: warning: conversion to 'unsigned int' from 'int' may change the sign of the result [-Wsign-conversion] origin=malloc(sizeof(double)*ndim); ^ /<>/testdir/minc2-read-rgb.c:119:29: warning: conversion to 'unsigned int' from 'int' may change the sign of the result [-Wsign-conversion] step=malloc(sizeof(double)*ndim); ^ /<>/testdir/minc2-read-rgb.c:129:36: warning: conversion to 'misize_t' {aka 'long long unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] r = miget_dimension_sizes ( dim, ndim, sizes ); ^~~~ /<>/testdir/minc2-read-rgb.c:134:53: warning: conversion to 'misize_t' {aka 'long long unsigned int'} from 'int' may change the sign of the result [-Wsign-conversion] r = miget_dimension_separations(dim,MI_ORDER_FILE,ndim,step); ^~~~ /<>/testdir/minc2-read-rgb.c:197:68: warning: conversion from 'misize_t' {aka 'long long unsigned int'} to 'size_t' {aka 'unsigned int'} may change value [-Wconversion] f_full=malloc(sizeof(float)*my_sizes[0]*my_sizes[1]*my_sizes[2]*my_sizes[3]); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /<>/testdir/minc2-read-rgb.c:224:69: warning: conversion from 'misize_t' {aka 'long long unsigned int'} to 'size_t' {aka 'unsigned int'} may change value [-Wconversion] f_axial=malloc(sizeof(float)*my_count[0]*my_count[1]*my_count[2]*my_count[3]); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /<>/testdir/minc2-read-rgb.c:238:72: warning: conversion from 'misize_t' {aka 'long long unsigned int'} to 'size_t' {aka 'unsigned int'} may change value [-Wconversion] f_sagittal=malloc(sizeof(float)*my_count[0]*my_count[1]*my_count[2]*my_count[3]); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /<>/testdir/minc2-read-rgb.c:250:71: warning: conversion from 'misize_t' {aka 'long long unsigned int'} to 'size_t' {aka 'unsigned int'} may change value [-Wconversion] f_coronal=malloc(sizeof(float)*my_count[0]*my_count[1]*my_count[2]*my_count[3]); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /<>/testdir/minc2-read-rgb.c:262:68: warning: conversion from 'misize_t' {aka 'long long unsigned int'} to 'size_t' {aka 'unsigned int'} may change value [-Wconversion] s_full=malloc(sizeof(short)*my_sizes[0]*my_sizes[1]*my_sizes[2]*my_sizes[3]); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /<>/testdir/minc2-read-rgb.c:280:69: warning: conversion from 'misize_t' {aka 'long long unsigned int'} to 'size_t' {aka 'unsigned int'} may change value [-Wconversion] s_axial=malloc(sizeof(short)*my_count[0]*my_count[1]*my_count[2]*my_count[3]); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /<>/testdir/minc2-read-rgb.c:292:72: warning: conversion from 'misize_t' {aka 'long long unsigned int'} to 'size_t' {aka 'unsigned int'} may change value [-Wconversion] s_sagittal=malloc(sizeof(short)*my_count[0]*my_count[1]*my_count[2]*my_count[3]); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /<>/testdir/minc2-read-rgb.c:305:71: warning: conversion from 'misize_t' {aka 'long long unsigned int'} to 'size_t' {aka 'unsigned int'} may change value [-Wconversion] s_coronal=malloc(sizeof(short)*my_count[0]*my_count[1]*my_count[2]*my_count[3]); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /<>/testdir/minc2-read-rgb.c:316:69: warning: conversion from 'misize_t' {aka 'long long unsigned int'} to 'size_t' {aka 'unsigned int'} may change value [-Wconversion] d_full=malloc(sizeof(double)*my_sizes[0]*my_sizes[1]*my_sizes[2]*my_sizes[3]); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /<>/testdir/minc2-read-rgb.c:366:56: warning: conversion from 'misize_t' {aka 'long long unsigned int'} to 'size_t' {aka 'unsigned int'} may change value [-Wconversion] f_full=malloc(sizeof(float)*my_sizes[0]*my_sizes[1]*my_sizes[2]); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /<>/testdir/minc2-read-rgb.c:384:57: warning: conversion from 'misize_t' {aka 'long long unsigned int'} to 'size_t' {aka 'unsigned int'} may change value [-Wconversion] f_axial=malloc(sizeof(float)*my_count[0]*my_count[1]*my_count[2]); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /<>/testdir/minc2-read-rgb.c:398:60: warning: conversion from 'misize_t' {aka 'long long unsigned int'} to 'size_t' {aka 'unsigned int'} may change value [-Wconversion] f_sagittal=malloc(sizeof(float)*my_count[0]*my_count[1]*my_count[2]); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /<>/testdir/minc2-read-rgb.c:410:59: warning: conversion from 'misize_t' {aka 'long long unsigned int'} to 'size_t' {aka 'unsigned int'} may change value [-Wconversion] f_coronal=malloc(sizeof(float)*my_count[0]*my_count[1]*my_count[2]); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /<>/testdir/minc2-read-rgb.c:429:57: warning: conversion from 'misize_t' {aka 'long long unsigned int'} to 'size_t' {aka 'unsigned int'} may change value [-Wconversion] s_axial=malloc(sizeof(short)*my_count[0]*my_count[1]*my_count[2]); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /<>/testdir/minc2-read-rgb.c:432:56: warning: conversion from 'misize_t' {aka 'long long unsigned int'} to 'size_t' {aka 'unsigned int'} may change value [-Wconversion] s_full=malloc(sizeof(short)*my_sizes[0]*my_sizes[1]*my_sizes[2]); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /<>/testdir/minc2-read-rgb.c:451:60: warning: conversion from 'misize_t' {aka 'long long unsigned int'} to 'size_t' {aka 'unsigned int'} may change value [-Wconversion] s_sagittal=malloc(sizeof(short)*my_count[0]*my_count[1]*my_count[2]); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /<>/testdir/minc2-read-rgb.c:464:59: warning: conversion from 'misize_t' {aka 'long long unsigned int'} to 'size_t' {aka 'unsigned int'} may change value [-Wconversion] s_coronal=malloc(sizeof(short)*my_count[0]*my_count[1]*my_count[2]); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /<>/testdir/minc2-read-rgb.c:475:57: warning: conversion from 'misize_t' {aka 'long long unsigned int'} to 'size_t' {aka 'unsigned int'} may change value [-Wconversion] d_full=malloc(sizeof(double)*my_sizes[0]*my_sizes[1]*my_sizes[2]); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [100%] Linking C executable minc2-read-rgb cd /<>/obj-arm-linux-gnueabi/testdir && /usr/bin/cmake -E cmake_link_script CMakeFiles/minc2-read-rgb.dir/link.txt --verbose=1 /usr/bin/arm-linux-gnueabi-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wconversion -fPIC -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/minc2-read-rgb.dir/minc2-read-rgb.c.o -o minc2-read-rgb -Wl,-rpath,/<>/obj-arm-linux-gnueabi:/usr/lib/arm-linux-gnueabi/hdf5/serial ../libminc2.so.5.2.0 /usr/lib/arm-linux-gnueabi/hdf5/serial/libhdf5.so -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' [100%] Built target minc2-read-rgb make[2]: Leaving directory '/<>/obj-arm-linux-gnueabi' /usr/bin/cmake -E cmake_progress_start /<>/obj-arm-linux-gnueabi/CMakeFiles 0 make[1]: Leaving directory '/<>/obj-arm-linux-gnueabi' debian/rules override_dh_auto_test make[1]: Entering directory '/<>' dh_auto_test --no-parallel make[1]: Leaving directory '/<>' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh binary-arch dh_testroot -a dh_prep -a dh_auto_install -a cd obj-arm-linux-gnueabi && make -j1 install DESTDIR=/<>/debian/tmp AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/<>/obj-arm-linux-gnueabi' /usr/bin/cmake -S/<> -B/<>/obj-arm-linux-gnueabi --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/obj-arm-linux-gnueabi/CMakeFiles /<>/obj-arm-linux-gnueabi/CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/<>/obj-arm-linux-gnueabi' make -f CMakeFiles/minc2_static.dir/build.make CMakeFiles/minc2_static.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/CMakeFiles/minc2_static.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f CMakeFiles/minc2_static.dir/build.make CMakeFiles/minc2_static.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' make[3]: Nothing to be done for 'CMakeFiles/minc2_static.dir/build'. make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' [ 30%] Built target minc2_static make -f CMakeFiles/minc2.dir/build.make CMakeFiles/minc2.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/CMakeFiles/minc2.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f CMakeFiles/minc2.dir/build.make CMakeFiles/minc2.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' make[3]: Nothing to be done for 'CMakeFiles/minc2.dir/build'. make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' [ 60%] Built target minc2 make -f ezminc/CMakeFiles/minc_io.dir/build.make ezminc/CMakeFiles/minc_io.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/ezminc /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/ezminc /<>/obj-arm-linux-gnueabi/ezminc/CMakeFiles/minc_io.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f ezminc/CMakeFiles/minc_io.dir/build.make ezminc/CMakeFiles/minc_io.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' make[3]: Nothing to be done for 'ezminc/CMakeFiles/minc_io.dir/build'. make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' [ 61%] Built target minc_io make -f ezminc/examples/CMakeFiles/volume_avg.dir/build.make ezminc/examples/CMakeFiles/volume_avg.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/ezminc/examples /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/ezminc/examples /<>/obj-arm-linux-gnueabi/ezminc/examples/CMakeFiles/volume_avg.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f ezminc/examples/CMakeFiles/volume_avg.dir/build.make ezminc/examples/CMakeFiles/volume_avg.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' make[3]: Nothing to be done for 'ezminc/examples/CMakeFiles/volume_avg.dir/build'. make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' [ 62%] Built target volume_avg make -f ezminc/examples/CMakeFiles/trilinear_resample.dir/build.make ezminc/examples/CMakeFiles/trilinear_resample.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/ezminc/examples /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/ezminc/examples /<>/obj-arm-linux-gnueabi/ezminc/examples/CMakeFiles/trilinear_resample.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f ezminc/examples/CMakeFiles/trilinear_resample.dir/build.make ezminc/examples/CMakeFiles/trilinear_resample.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' make[3]: Nothing to be done for 'ezminc/examples/CMakeFiles/trilinear_resample.dir/build'. make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' [ 63%] Built target trilinear_resample make -f ezminc/examples/CMakeFiles/volume_msq_dist.dir/build.make ezminc/examples/CMakeFiles/volume_msq_dist.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/ezminc/examples /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/ezminc/examples /<>/obj-arm-linux-gnueabi/ezminc/examples/CMakeFiles/volume_msq_dist.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f ezminc/examples/CMakeFiles/volume_msq_dist.dir/build.make ezminc/examples/CMakeFiles/volume_msq_dist.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' make[3]: Nothing to be done for 'ezminc/examples/CMakeFiles/volume_msq_dist.dir/build'. make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' [ 64%] Built target volume_msq_dist make -f ezminc/examples/CMakeFiles/create_grid_file.dir/build.make ezminc/examples/CMakeFiles/create_grid_file.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/ezminc/examples /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/ezminc/examples /<>/obj-arm-linux-gnueabi/ezminc/examples/CMakeFiles/create_grid_file.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f ezminc/examples/CMakeFiles/create_grid_file.dir/build.make ezminc/examples/CMakeFiles/create_grid_file.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' make[3]: Nothing to be done for 'ezminc/examples/CMakeFiles/create_grid_file.dir/build'. make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' [ 65%] Built target create_grid_file make -f ezminc/tests/CMakeFiles/ezminc_rw_test2.dir/build.make ezminc/tests/CMakeFiles/ezminc_rw_test2.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/ezminc/tests /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/ezminc/tests /<>/obj-arm-linux-gnueabi/ezminc/tests/CMakeFiles/ezminc_rw_test2.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f ezminc/tests/CMakeFiles/ezminc_rw_test2.dir/build.make ezminc/tests/CMakeFiles/ezminc_rw_test2.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' make[3]: Nothing to be done for 'ezminc/tests/CMakeFiles/ezminc_rw_test2.dir/build'. make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' [ 66%] Built target ezminc_rw_test2 make -f ezminc/tests/CMakeFiles/ezminc_rw_test.dir/build.make ezminc/tests/CMakeFiles/ezminc_rw_test.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/ezminc/tests /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/ezminc/tests /<>/obj-arm-linux-gnueabi/ezminc/tests/CMakeFiles/ezminc_rw_test.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f ezminc/tests/CMakeFiles/ezminc_rw_test.dir/build.make ezminc/tests/CMakeFiles/ezminc_rw_test.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' make[3]: Nothing to be done for 'ezminc/tests/CMakeFiles/ezminc_rw_test.dir/build'. make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' [ 67%] Built target ezminc_rw_test make -f testdir/CMakeFiles/minc2-leak-test.dir/build.make testdir/CMakeFiles/minc2-leak-test.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/testdir /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/testdir /<>/obj-arm-linux-gnueabi/testdir/CMakeFiles/minc2-leak-test.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f testdir/CMakeFiles/minc2-leak-test.dir/build.make testdir/CMakeFiles/minc2-leak-test.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' make[3]: Nothing to be done for 'testdir/CMakeFiles/minc2-leak-test.dir/build'. make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' [ 68%] Built target minc2-leak-test make -f testdir/CMakeFiles/minc2-read-metadata.dir/build.make testdir/CMakeFiles/minc2-read-metadata.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/testdir /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/testdir /<>/obj-arm-linux-gnueabi/testdir/CMakeFiles/minc2-read-metadata.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f testdir/CMakeFiles/minc2-read-metadata.dir/build.make testdir/CMakeFiles/minc2-read-metadata.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' make[3]: Nothing to be done for 'testdir/CMakeFiles/minc2-read-metadata.dir/build'. make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' [ 69%] Built target minc2-read-metadata make -f testdir/CMakeFiles/copy_xfm.dir/build.make testdir/CMakeFiles/copy_xfm.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/testdir /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/testdir /<>/obj-arm-linux-gnueabi/testdir/CMakeFiles/copy_xfm.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f testdir/CMakeFiles/copy_xfm.dir/build.make testdir/CMakeFiles/copy_xfm.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' make[3]: Nothing to be done for 'testdir/CMakeFiles/copy_xfm.dir/build'. make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' [ 69%] Built target copy_xfm make -f testdir/CMakeFiles/minc2-volprops-test.dir/build.make testdir/CMakeFiles/minc2-volprops-test.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/testdir /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/testdir /<>/obj-arm-linux-gnueabi/testdir/CMakeFiles/minc2-volprops-test.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f testdir/CMakeFiles/minc2-volprops-test.dir/build.make testdir/CMakeFiles/minc2-volprops-test.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' make[3]: Nothing to be done for 'testdir/CMakeFiles/minc2-volprops-test.dir/build'. make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' [ 70%] Built target minc2-volprops-test make -f testdir/CMakeFiles/volume_test.dir/build.make testdir/CMakeFiles/volume_test.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/testdir /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/testdir /<>/obj-arm-linux-gnueabi/testdir/CMakeFiles/volume_test.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f testdir/CMakeFiles/volume_test.dir/build.make testdir/CMakeFiles/volume_test.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' make[3]: Nothing to be done for 'testdir/CMakeFiles/volume_test.dir/build'. make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' [ 71%] Built target volume_test make -f testdir/CMakeFiles/minc2-create-test-images-2.dir/build.make testdir/CMakeFiles/minc2-create-test-images-2.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/testdir /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/testdir /<>/obj-arm-linux-gnueabi/testdir/CMakeFiles/minc2-create-test-images-2.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f testdir/CMakeFiles/minc2-create-test-images-2.dir/build.make testdir/CMakeFiles/minc2-create-test-images-2.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' make[3]: Nothing to be done for 'testdir/CMakeFiles/minc2-create-test-images-2.dir/build'. make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' [ 72%] Built target minc2-create-test-images-2 make -f testdir/CMakeFiles/minc2-record-test.dir/build.make testdir/CMakeFiles/minc2-record-test.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/testdir /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/testdir /<>/obj-arm-linux-gnueabi/testdir/CMakeFiles/minc2-record-test.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f testdir/CMakeFiles/minc2-record-test.dir/build.make testdir/CMakeFiles/minc2-record-test.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' make[3]: Nothing to be done for 'testdir/CMakeFiles/minc2-record-test.dir/build'. make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' [ 73%] Built target minc2-record-test make -f testdir/CMakeFiles/minc_long_attr.dir/build.make testdir/CMakeFiles/minc_long_attr.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/testdir /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/testdir /<>/obj-arm-linux-gnueabi/testdir/CMakeFiles/minc_long_attr.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f testdir/CMakeFiles/minc_long_attr.dir/build.make testdir/CMakeFiles/minc_long_attr.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' make[3]: Nothing to be done for 'testdir/CMakeFiles/minc_long_attr.dir/build'. make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' [ 74%] Built target minc_long_attr make -f testdir/CMakeFiles/minc2-create-test-images.dir/build.make testdir/CMakeFiles/minc2-create-test-images.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/testdir /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/testdir /<>/obj-arm-linux-gnueabi/testdir/CMakeFiles/minc2-create-test-images.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f testdir/CMakeFiles/minc2-create-test-images.dir/build.make testdir/CMakeFiles/minc2-create-test-images.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' make[3]: Nothing to be done for 'testdir/CMakeFiles/minc2-create-test-images.dir/build'. make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' [ 75%] Built target minc2-create-test-images make -f testdir/CMakeFiles/minc2-grpattr-test.dir/build.make testdir/CMakeFiles/minc2-grpattr-test.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/testdir /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/testdir /<>/obj-arm-linux-gnueabi/testdir/CMakeFiles/minc2-grpattr-test.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f testdir/CMakeFiles/minc2-grpattr-test.dir/build.make testdir/CMakeFiles/minc2-grpattr-test.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' make[3]: Nothing to be done for 'testdir/CMakeFiles/minc2-grpattr-test.dir/build'. make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' [ 75%] Built target minc2-grpattr-test make -f testdir/CMakeFiles/minc2-hyper-test.dir/build.make testdir/CMakeFiles/minc2-hyper-test.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/testdir /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/testdir /<>/obj-arm-linux-gnueabi/testdir/CMakeFiles/minc2-hyper-test.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f testdir/CMakeFiles/minc2-hyper-test.dir/build.make testdir/CMakeFiles/minc2-hyper-test.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' make[3]: Nothing to be done for 'testdir/CMakeFiles/minc2-hyper-test.dir/build'. make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' [ 76%] Built target minc2-hyper-test make -f testdir/CMakeFiles/test_mconv.dir/build.make testdir/CMakeFiles/test_mconv.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/testdir /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/testdir /<>/obj-arm-linux-gnueabi/testdir/CMakeFiles/test_mconv.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f testdir/CMakeFiles/test_mconv.dir/build.make testdir/CMakeFiles/test_mconv.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' make[3]: Nothing to be done for 'testdir/CMakeFiles/test_mconv.dir/build'. make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' [ 77%] Built target test_mconv make -f testdir/CMakeFiles/mincapi.dir/build.make testdir/CMakeFiles/mincapi.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/testdir /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/testdir /<>/obj-arm-linux-gnueabi/testdir/CMakeFiles/mincapi.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f testdir/CMakeFiles/mincapi.dir/build.make testdir/CMakeFiles/mincapi.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' make[3]: Nothing to be done for 'testdir/CMakeFiles/mincapi.dir/build'. make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' [ 78%] Built target mincapi make -f testdir/CMakeFiles/icv_dim.dir/build.make testdir/CMakeFiles/icv_dim.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/testdir /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/testdir /<>/obj-arm-linux-gnueabi/testdir/CMakeFiles/icv_dim.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f testdir/CMakeFiles/icv_dim.dir/build.make testdir/CMakeFiles/icv_dim.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' make[3]: Nothing to be done for 'testdir/CMakeFiles/icv_dim.dir/build'. make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' [ 79%] Built target icv_dim make -f testdir/CMakeFiles/minc_tst.dir/build.make testdir/CMakeFiles/minc_tst.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/testdir /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/testdir /<>/obj-arm-linux-gnueabi/testdir/CMakeFiles/minc_tst.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f testdir/CMakeFiles/minc_tst.dir/build.make testdir/CMakeFiles/minc_tst.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' make[3]: Nothing to be done for 'testdir/CMakeFiles/minc_tst.dir/build'. make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' [ 80%] Built target minc_tst make -f testdir/CMakeFiles/test_xfm.dir/build.make testdir/CMakeFiles/test_xfm.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/testdir /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/testdir /<>/obj-arm-linux-gnueabi/testdir/CMakeFiles/test_xfm.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f testdir/CMakeFiles/test_xfm.dir/build.make testdir/CMakeFiles/test_xfm.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' make[3]: Nothing to be done for 'testdir/CMakeFiles/test_xfm.dir/build'. make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' [ 81%] Built target test_xfm make -f testdir/CMakeFiles/minc_types.dir/build.make testdir/CMakeFiles/minc_types.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/testdir /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/testdir /<>/obj-arm-linux-gnueabi/testdir/CMakeFiles/minc_types.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f testdir/CMakeFiles/minc_types.dir/build.make testdir/CMakeFiles/minc_types.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' make[3]: Nothing to be done for 'testdir/CMakeFiles/minc_types.dir/build'. make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' [ 82%] Built target minc_types make -f testdir/CMakeFiles/icv.dir/build.make testdir/CMakeFiles/icv.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/testdir /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/testdir /<>/obj-arm-linux-gnueabi/testdir/CMakeFiles/icv.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f testdir/CMakeFiles/icv.dir/build.make testdir/CMakeFiles/icv.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' make[3]: Nothing to be done for 'testdir/CMakeFiles/icv.dir/build'. make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' [ 83%] Built target icv make -f testdir/CMakeFiles/icv_vec.dir/build.make testdir/CMakeFiles/icv_vec.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/testdir /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/testdir /<>/obj-arm-linux-gnueabi/testdir/CMakeFiles/icv_vec.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f testdir/CMakeFiles/icv_vec.dir/build.make testdir/CMakeFiles/icv_vec.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' make[3]: Nothing to be done for 'testdir/CMakeFiles/icv_vec.dir/build'. make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' [ 84%] Built target icv_vec make -f testdir/CMakeFiles/icv_dim1.dir/build.make testdir/CMakeFiles/icv_dim1.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/testdir /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/testdir /<>/obj-arm-linux-gnueabi/testdir/CMakeFiles/icv_dim1.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f testdir/CMakeFiles/icv_dim1.dir/build.make testdir/CMakeFiles/icv_dim1.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' make[3]: Nothing to be done for 'testdir/CMakeFiles/icv_dim1.dir/build'. make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' [ 85%] Built target icv_dim1 make -f testdir/CMakeFiles/icv_fillvalue.dir/build.make testdir/CMakeFiles/icv_fillvalue.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/testdir /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/testdir /<>/obj-arm-linux-gnueabi/testdir/CMakeFiles/icv_fillvalue.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f testdir/CMakeFiles/icv_fillvalue.dir/build.make testdir/CMakeFiles/icv_fillvalue.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' make[3]: Nothing to be done for 'testdir/CMakeFiles/icv_fillvalue.dir/build'. make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' [ 85%] Built target icv_fillvalue make -f testdir/CMakeFiles/create_grid_xfm.dir/build.make testdir/CMakeFiles/create_grid_xfm.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/testdir /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/testdir /<>/obj-arm-linux-gnueabi/testdir/CMakeFiles/create_grid_xfm.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f testdir/CMakeFiles/create_grid_xfm.dir/build.make testdir/CMakeFiles/create_grid_xfm.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' make[3]: Nothing to be done for 'testdir/CMakeFiles/create_grid_xfm.dir/build'. make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' [ 86%] Built target create_grid_xfm make -f testdir/CMakeFiles/verify_xfm.dir/build.make testdir/CMakeFiles/verify_xfm.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/testdir /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/testdir /<>/obj-arm-linux-gnueabi/testdir/CMakeFiles/verify_xfm.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f testdir/CMakeFiles/verify_xfm.dir/build.make testdir/CMakeFiles/verify_xfm.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' make[3]: Nothing to be done for 'testdir/CMakeFiles/verify_xfm.dir/build'. make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' [ 87%] Built target verify_xfm make -f testdir/CMakeFiles/minc2-label-test.dir/build.make testdir/CMakeFiles/minc2-label-test.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/testdir /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/testdir /<>/obj-arm-linux-gnueabi/testdir/CMakeFiles/minc2-label-test.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f testdir/CMakeFiles/minc2-label-test.dir/build.make testdir/CMakeFiles/minc2-label-test.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' make[3]: Nothing to be done for 'testdir/CMakeFiles/minc2-label-test.dir/build'. make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' [ 88%] Built target minc2-label-test make -f testdir/CMakeFiles/minc2-convert-test.dir/build.make testdir/CMakeFiles/minc2-convert-test.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/testdir /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/testdir /<>/obj-arm-linux-gnueabi/testdir/CMakeFiles/minc2-convert-test.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f testdir/CMakeFiles/minc2-convert-test.dir/build.make testdir/CMakeFiles/minc2-convert-test.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' make[3]: Nothing to be done for 'testdir/CMakeFiles/minc2-convert-test.dir/build'. make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' [ 89%] Built target minc2-convert-test make -f testdir/CMakeFiles/minc2-datatype-test.dir/build.make testdir/CMakeFiles/minc2-datatype-test.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/testdir /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/testdir /<>/obj-arm-linux-gnueabi/testdir/CMakeFiles/minc2-datatype-test.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f testdir/CMakeFiles/minc2-datatype-test.dir/build.make testdir/CMakeFiles/minc2-datatype-test.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' make[3]: Nothing to be done for 'testdir/CMakeFiles/minc2-datatype-test.dir/build'. make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' [ 90%] Built target minc2-datatype-test make -f testdir/CMakeFiles/minc2-large-attribute.dir/build.make testdir/CMakeFiles/minc2-large-attribute.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/testdir /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/testdir /<>/obj-arm-linux-gnueabi/testdir/CMakeFiles/minc2-large-attribute.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f testdir/CMakeFiles/minc2-large-attribute.dir/build.make testdir/CMakeFiles/minc2-large-attribute.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' make[3]: Nothing to be done for 'testdir/CMakeFiles/minc2-large-attribute.dir/build'. make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' [ 91%] Built target minc2-large-attribute make -f testdir/CMakeFiles/minc2-full-test.dir/build.make testdir/CMakeFiles/minc2-full-test.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/testdir /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/testdir /<>/obj-arm-linux-gnueabi/testdir/CMakeFiles/minc2-full-test.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f testdir/CMakeFiles/minc2-full-test.dir/build.make testdir/CMakeFiles/minc2-full-test.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' make[3]: Nothing to be done for 'testdir/CMakeFiles/minc2-full-test.dir/build'. make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' [ 92%] Built target minc2-full-test make -f testdir/CMakeFiles/test_arg_parse.dir/build.make testdir/CMakeFiles/test_arg_parse.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/testdir /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/testdir /<>/obj-arm-linux-gnueabi/testdir/CMakeFiles/test_arg_parse.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f testdir/CMakeFiles/test_arg_parse.dir/build.make testdir/CMakeFiles/test_arg_parse.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' make[3]: Nothing to be done for 'testdir/CMakeFiles/test_arg_parse.dir/build'. make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' [ 93%] Built target test_arg_parse make -f testdir/CMakeFiles/minc2-vector_dimension-test.dir/build.make testdir/CMakeFiles/minc2-vector_dimension-test.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/testdir /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/testdir /<>/obj-arm-linux-gnueabi/testdir/CMakeFiles/minc2-vector_dimension-test.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f testdir/CMakeFiles/minc2-vector_dimension-test.dir/build.make testdir/CMakeFiles/minc2-vector_dimension-test.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' make[3]: Nothing to be done for 'testdir/CMakeFiles/minc2-vector_dimension-test.dir/build'. make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' [ 94%] Built target minc2-vector_dimension-test make -f testdir/CMakeFiles/minc2-hyper-test-2.dir/build.make testdir/CMakeFiles/minc2-hyper-test-2.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/testdir /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/testdir /<>/obj-arm-linux-gnueabi/testdir/CMakeFiles/minc2-hyper-test-2.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f testdir/CMakeFiles/minc2-hyper-test-2.dir/build.make testdir/CMakeFiles/minc2-hyper-test-2.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' make[3]: Nothing to be done for 'testdir/CMakeFiles/minc2-hyper-test-2.dir/build'. make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' [ 95%] Built target minc2-hyper-test-2 make -f testdir/CMakeFiles/minc2-multires-test.dir/build.make testdir/CMakeFiles/minc2-multires-test.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/testdir /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/testdir /<>/obj-arm-linux-gnueabi/testdir/CMakeFiles/minc2-multires-test.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f testdir/CMakeFiles/minc2-multires-test.dir/build.make testdir/CMakeFiles/minc2-multires-test.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' make[3]: Nothing to be done for 'testdir/CMakeFiles/minc2-multires-test.dir/build'. make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' [ 96%] Built target minc2-multires-test make -f testdir/CMakeFiles/multidim_test.dir/build.make testdir/CMakeFiles/multidim_test.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/testdir /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/testdir /<>/obj-arm-linux-gnueabi/testdir/CMakeFiles/multidim_test.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f testdir/CMakeFiles/multidim_test.dir/build.make testdir/CMakeFiles/multidim_test.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' make[3]: Nothing to be done for 'testdir/CMakeFiles/multidim_test.dir/build'. make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' [ 96%] Built target multidim_test make -f testdir/CMakeFiles/minc2-slice-test.dir/build.make testdir/CMakeFiles/minc2-slice-test.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/testdir /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/testdir /<>/obj-arm-linux-gnueabi/testdir/CMakeFiles/minc2-slice-test.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f testdir/CMakeFiles/minc2-slice-test.dir/build.make testdir/CMakeFiles/minc2-slice-test.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' make[3]: Nothing to be done for 'testdir/CMakeFiles/minc2-slice-test.dir/build'. make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' [ 97%] Built target minc2-slice-test make -f testdir/CMakeFiles/icv_range.dir/build.make testdir/CMakeFiles/icv_range.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/testdir /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/testdir /<>/obj-arm-linux-gnueabi/testdir/CMakeFiles/icv_range.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f testdir/CMakeFiles/icv_range.dir/build.make testdir/CMakeFiles/icv_range.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' make[3]: Nothing to be done for 'testdir/CMakeFiles/icv_range.dir/build'. make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' [ 98%] Built target icv_range make -f testdir/CMakeFiles/minc2-valid-test.dir/build.make testdir/CMakeFiles/minc2-valid-test.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/testdir /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/testdir /<>/obj-arm-linux-gnueabi/testdir/CMakeFiles/minc2-valid-test.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f testdir/CMakeFiles/minc2-valid-test.dir/build.make testdir/CMakeFiles/minc2-valid-test.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' make[3]: Nothing to be done for 'testdir/CMakeFiles/minc2-valid-test.dir/build'. make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' [ 99%] Built target minc2-valid-test make -f testdir/CMakeFiles/minc_conversion.dir/build.make testdir/CMakeFiles/minc_conversion.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/testdir /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/testdir /<>/obj-arm-linux-gnueabi/testdir/CMakeFiles/minc_conversion.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f testdir/CMakeFiles/minc_conversion.dir/build.make testdir/CMakeFiles/minc_conversion.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' make[3]: Nothing to be done for 'testdir/CMakeFiles/minc_conversion.dir/build'. make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' [100%] Built target minc_conversion make -f testdir/CMakeFiles/minc2-read-rgb.dir/build.make testdir/CMakeFiles/minc2-read-rgb.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/testdir /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/testdir /<>/obj-arm-linux-gnueabi/testdir/CMakeFiles/minc2-read-rgb.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f testdir/CMakeFiles/minc2-read-rgb.dir/build.make testdir/CMakeFiles/minc2-read-rgb.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' make[3]: Nothing to be done for 'testdir/CMakeFiles/minc2-read-rgb.dir/build'. make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' [100%] Built target minc2-read-rgb make[2]: Leaving directory '/<>/obj-arm-linux-gnueabi' /usr/bin/cmake -E cmake_progress_start /<>/obj-arm-linux-gnueabi/CMakeFiles 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/<>/obj-arm-linux-gnueabi' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/<>/obj-arm-linux-gnueabi' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /<>/debian/tmp/usr/lib/arm-linux-gnueabi/libminc2.so.5.2.0 -- Set runtime path of "/<>/debian/tmp/usr/lib/arm-linux-gnueabi/libminc2.so.5.2.0" to "" -- Installing: /<>/debian/tmp/usr/lib/arm-linux-gnueabi/libminc2.so -- Installing: /<>/debian/tmp/usr/include/minc2.h -- Installing: /<>/debian/tmp/usr/include/minc2_defs.h -- Installing: /<>/debian/tmp/usr/include/minc2_structs.h -- Installing: /<>/debian/tmp/usr/include/minc2_api.h -- Installing: /<>/debian/tmp/usr/include/minc2_error.h -- Installing: /<>/debian/tmp/usr/include/minc_config.h -- Installing: /<>/debian/tmp/usr/include/minc_error.h -- Installing: /<>/debian/tmp/usr/include/ParseArgv.h -- Installing: /<>/debian/tmp/usr/include/read_file_names.h -- Installing: /<>/debian/tmp/usr/include/restructure.h -- Installing: /<>/debian/tmp/usr/include/time_stamp.h -- Installing: /<>/debian/tmp/usr/include/minc_common_defs.h -- Installing: /<>/debian/tmp/usr/include/volume_io.h -- Installing: /<>/debian/tmp/usr/include/minc.h -- Installing: /<>/debian/tmp/usr/include/voxel_loop.h -- Installing: /<>/debian/tmp/usr/include/nd_loop.h -- Installing: /<>/debian/tmp/usr/include/minc_compat.h -- Installing: /<>/debian/tmp/usr/include/minc_simple.h -- Installing: /<>/debian/tmp/usr/include/minc_format_convert.h -- Installing: /<>/debian/tmp/usr/include/volume_io/alloc.h -- Installing: /<>/debian/tmp/usr/include/volume_io/arrays.h -- Installing: /<>/debian/tmp/usr/include/volume_io/basic.h -- Installing: /<>/debian/tmp/usr/include/volume_io/def_math.h -- Installing: /<>/debian/tmp/usr/include/volume_io/files.h -- Installing: /<>/debian/tmp/usr/include/volume_io/geom_structs.h -- Installing: /<>/debian/tmp/usr/include/volume_io/geometry.h -- Installing: /<>/debian/tmp/usr/include/volume_io/multidim.h -- Installing: /<>/debian/tmp/usr/include/volume_io/progress.h -- Installing: /<>/debian/tmp/usr/include/volume_io/string_funcs.h -- Installing: /<>/debian/tmp/usr/include/volume_io/system_dependent.h -- Installing: /<>/debian/tmp/usr/include/volume_io/transforms.h -- Installing: /<>/debian/tmp/usr/include/volume_io/vol_io_prototypes.h -- Installing: /<>/debian/tmp/usr/include/volume_io/volume.h -- Installing: /<>/debian/tmp/usr/include/volume_io/volume_cache.h -- Installing: /<>/debian/tmp/usr/lib/arm-linux-gnueabi/cmake/UseLIBMINC.cmake -- Installing: /<>/debian/tmp/usr/lib/arm-linux-gnueabi/cmake/LIBMINCConfig.cmake -- Installing: /<>/debian/tmp/usr/lib/arm-linux-gnueabi/libminc_io.so.5.2.0 -- Set runtime path of "/<>/debian/tmp/usr/lib/arm-linux-gnueabi/libminc_io.so.5.2.0" to "" -- Installing: /<>/debian/tmp/usr/lib/arm-linux-gnueabi/libminc_io.so -- Installing: /<>/debian/tmp/usr/include/minc_io_exceptions.h -- Installing: /<>/debian/tmp/usr/include/minc_io_fixed_vector.h -- Installing: /<>/debian/tmp/usr/include/minc_io_simple_volume.h -- Installing: /<>/debian/tmp/usr/include/minc_1_rw.h -- Installing: /<>/debian/tmp/usr/include/minc_1_simple.h -- Installing: /<>/debian/tmp/usr/include/minc_1_simple_rw.h -- Installing: /<>/debian/tmp/usr/include/minc_io_4d_volume.h make[1]: Leaving directory '/<>/obj-arm-linux-gnueabi' dh_install -a dh_installdocs -a dh_installchangelogs -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/libminc2-5.2.0/usr/lib/arm-linux-gnueabi/libminc_io.so.5.2.0 found in none of the libraries dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/libminc2-5.2.0/usr/lib/arm-linux-gnueabi/libminc2.so.5.2.0 debian/libminc2-5.2.0/usr/lib/arm-linux-gnueabi/libminc_io.so.5.2.0 were not linked against libz.so.1 (they use none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/libminc2-5.2.0/usr/lib/arm-linux-gnueabi/libminc2.so.5.2.0 debian/libminc2-5.2.0/usr/lib/arm-linux-gnueabi/libminc_io.so.5.2.0 were not linked against libdl.so.2 (they use none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/libminc2-5.2.0/usr/lib/arm-linux-gnueabi/libminc2.so.5.2.0 debian/libminc2-5.2.0/usr/lib/arm-linux-gnueabi/libminc_io.so.5.2.0 were not linked against libsz.so.2 (they use none of the library's symbols) dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'libminc2-5.2.0' in '../libminc2-5.2.0_2.4.03-2_armel.deb'. dpkg-deb: building package 'libminc2-5.2.0-dbgsym' in '../libminc2-5.2.0-dbgsym_2.4.03-2_armel.deb'. dpkg-deb: building package 'libminc-dev' in '../libminc-dev_2.4.03-2_armel.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any >../libminc_2.4.03-2_armel.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2019-02-08T19:47:04Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:amd64 Filtered Build-Depends: lintian:amd64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/resolver-RYi8td/apt_archive/sbuild-build-depends-lintian-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-essential-dummy sbuild-build-depends-libminc-dummy sbuild-build-depends-lintian-dummy dpkg-scanpackages: info: Wrote 4 entries to output Packages file. Ign:1 copy:/<>/resolver-RYi8td/apt_archive ./ InRelease Get:2 copy:/<>/resolver-RYi8td/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-RYi8td/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-RYi8td/apt_archive ./ Sources [787 B] Get:5 copy:/<>/resolver-RYi8td/apt_archive ./ Packages [864 B] Fetched 2614 B in 0s (0 B/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: diffstat gpg gpgconf libapt-pkg-perl libassuan0 libcgi-pm-perl libclass-accessor-perl libclone-perl libdigest-hmac-perl libemail-valid-perl libexporter-tiny-perl libfile-basedir-perl libfuture-perl libhtml-parser-perl libhtml-tagset-perl libio-async-perl libio-pty-perl libio-socket-ssl-perl libipc-run-perl libipc-system-simple-perl liblist-moreutils-perl libmailtools-perl libnet-dns-perl libnet-domain-tld-perl libnet-ip-perl libnet-smtp-ssl-perl libnet-ssleay-perl libparse-debianchangelog-perl libreadline7 libsqlite3-0 libstruct-dumb-perl libsub-name-perl libtext-levenshtein-perl libtimedate-perl liburi-perl libyaml-0-2 libyaml-libyaml-perl lintian netbase patchutils perl-openssl-defaults readline-common t1utils Suggested packages: libdata-dump-perl ca-certificates libhtml-template-perl libwww-perl binutils-multiarch libtext-template-perl readline-doc Recommended packages: gnupg libcgi-fast-perl libhttp-message-perl libasync-mergepoint-perl libsereal-perl libtest-fatal-perl libtest-refcount-perl libdigest-bubblebabble-perl libnet-dns-sec-perl libnet-libidn-perl libauthen-sasl-perl libperlio-gzip-perl The following NEW packages will be installed: diffstat gpg gpgconf libapt-pkg-perl libassuan0 libcgi-pm-perl libclass-accessor-perl libclone-perl libdigest-hmac-perl libemail-valid-perl libexporter-tiny-perl libfile-basedir-perl libfuture-perl libhtml-parser-perl libhtml-tagset-perl libio-async-perl libio-pty-perl libio-socket-ssl-perl libipc-run-perl libipc-system-simple-perl liblist-moreutils-perl libmailtools-perl libnet-dns-perl libnet-domain-tld-perl libnet-ip-perl libnet-smtp-ssl-perl libnet-ssleay-perl libparse-debianchangelog-perl libreadline7 libsqlite3-0 libstruct-dumb-perl libsub-name-perl libtext-levenshtein-perl libtimedate-perl liburi-perl libyaml-0-2 libyaml-libyaml-perl lintian netbase patchutils perl-openssl-defaults readline-common sbuild-build-depends-lintian-dummy:armel t1utils 0 upgraded, 44 newly installed, 0 to remove and 0 not upgraded. Need to get 6134 kB of archives. After this operation, 16.3 MB of additional disk space will be used. Get:1 copy:/<>/resolver-RYi8td/apt_archive ./ sbuild-build-depends-lintian-dummy 0.invalid.0 [848 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 netbase all 5.5 [19.3 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 readline-common all 7.0-5 [70.6 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 diffstat amd64 1.62-1 [33.4 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 libassuan0 amd64 2.5.2-1 [49.4 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 libreadline7 amd64 7.0-5 [151 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 gpgconf amd64 2.2.12-1 [509 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 libsqlite3-0 amd64 3.26.0+fossilbc891ac6b-2 [635 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 gpg amd64 2.2.12-1 [862 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 libapt-pkg-perl amd64 0.1.34+b1 [71.2 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 libhtml-tagset-perl all 3.20-3 [12.7 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 liburi-perl all 1.76-1 [89.9 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 libhtml-parser-perl amd64 3.72-3+b3 [105 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 libcgi-pm-perl all 4.40-1 [222 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-name-perl amd64 0.21-1+b3 [13.6 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 libclass-accessor-perl all 0.51-1 [23.2 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 libclone-perl amd64 0.41-1+b1 [14.6 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libdigest-hmac-perl all 1.03+dfsg-2 [10.6 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 libtimedate-perl all 2.3000-2 [42.2 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 perl-openssl-defaults amd64 3 [6782 B] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-ssleay-perl amd64 1.85-2+b1 [308 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 libio-socket-ssl-perl all 2.060-3 [207 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-smtp-ssl-perl all 1.04-1 [6184 B] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 libmailtools-perl all 2.18-1 [88.5 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-ip-perl all 1.26-2 [29.0 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-dns-perl all 1.19-1 [372 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-domain-tld-perl all 1.75-1 [33.3 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 libemail-valid-perl all 1.202-1 [23.0 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 libexporter-tiny-perl all 1.002001-1 [36.9 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 libipc-system-simple-perl all 1.25-4 [26.5 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-basedir-perl all 0.08-1 [17.7 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 libfuture-perl all 0.39-1 [74.5 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 libstruct-dumb-perl all 0.09-1 [11.1 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 libio-async-perl all 0.72-1 [262 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 libio-pty-perl amd64 1:1.08-1.1+b5 [33.7 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 libipc-run-perl all 20180523.0-1 [101 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 liblist-moreutils-perl amd64 0.416-1+b4 [64.2 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 libparse-debianchangelog-perl all 1.2.0-13 [59.5 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-levenshtein-perl all 0.13-1 [11.1 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-0-2 amd64 0.2.1-1 [47.2 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-libyaml-perl amd64 0.76+repack-1 [33.1 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 patchutils amd64 0.3.4-2 [90.4 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 t1utils amd64 1.41-3 [62.3 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 lintian all 2.6.0 [1193 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 6134 kB in 0s (29.2 MB/s) Selecting previously unselected package netbase. (Reading database ... 20790 files and directories currently installed.) Preparing to unpack .../00-netbase_5.5_all.deb ... Unpacking netbase (5.5) ... Selecting previously unselected package readline-common. Preparing to unpack .../01-readline-common_7.0-5_all.deb ... Unpacking readline-common (7.0-5) ... Selecting previously unselected package diffstat. Preparing to unpack .../02-diffstat_1.62-1_amd64.deb ... Unpacking diffstat (1.62-1) ... Selecting previously unselected package libassuan0:amd64. Preparing to unpack .../03-libassuan0_2.5.2-1_amd64.deb ... Unpacking libassuan0:amd64 (2.5.2-1) ... Selecting previously unselected package libreadline7:amd64. Preparing to unpack .../04-libreadline7_7.0-5_amd64.deb ... Unpacking libreadline7:amd64 (7.0-5) ... Selecting previously unselected package gpgconf. Preparing to unpack .../05-gpgconf_2.2.12-1_amd64.deb ... Unpacking gpgconf (2.2.12-1) ... Selecting previously unselected package libsqlite3-0:amd64. 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Preparing to unpack .../12-libcgi-pm-perl_4.40-1_all.deb ... Unpacking libcgi-pm-perl (4.40-1) ... Selecting previously unselected package libsub-name-perl. Preparing to unpack .../13-libsub-name-perl_0.21-1+b3_amd64.deb ... Unpacking libsub-name-perl (0.21-1+b3) ... Selecting previously unselected package libclass-accessor-perl. Preparing to unpack .../14-libclass-accessor-perl_0.51-1_all.deb ... Unpacking libclass-accessor-perl (0.51-1) ... Selecting previously unselected package libclone-perl. Preparing to unpack .../15-libclone-perl_0.41-1+b1_amd64.deb ... Unpacking libclone-perl (0.41-1+b1) ... Selecting previously unselected package libdigest-hmac-perl. Preparing to unpack .../16-libdigest-hmac-perl_1.03+dfsg-2_all.deb ... Unpacking libdigest-hmac-perl (1.03+dfsg-2) ... Selecting previously unselected package libtimedate-perl. Preparing to unpack .../17-libtimedate-perl_2.3000-2_all.deb ... Unpacking libtimedate-perl (2.3000-2) ... Selecting previously unselected package perl-openssl-defaults:amd64. Preparing to unpack .../18-perl-openssl-defaults_3_amd64.deb ... Unpacking perl-openssl-defaults:amd64 (3) ... Selecting previously unselected package libnet-ssleay-perl. Preparing to unpack .../19-libnet-ssleay-perl_1.85-2+b1_amd64.deb ... Unpacking libnet-ssleay-perl (1.85-2+b1) ... Selecting previously unselected package libio-socket-ssl-perl. Preparing to unpack .../20-libio-socket-ssl-perl_2.060-3_all.deb ... Unpacking libio-socket-ssl-perl (2.060-3) ... Selecting previously unselected package libnet-smtp-ssl-perl. Preparing to unpack .../21-libnet-smtp-ssl-perl_1.04-1_all.deb ... Unpacking libnet-smtp-ssl-perl (1.04-1) ... Selecting previously unselected package libmailtools-perl. Preparing to unpack .../22-libmailtools-perl_2.18-1_all.deb ... Unpacking libmailtools-perl (2.18-1) ... Selecting previously unselected package libnet-ip-perl. Preparing to unpack .../23-libnet-ip-perl_1.26-2_all.deb ... 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Setting up perl-openssl-defaults:amd64 (3) ... Setting up libipc-system-simple-perl (1.25-4) ... Setting up libfile-basedir-perl (0.08-1) ... Setting up libfuture-perl (0.39-1) ... Setting up libexporter-tiny-perl (1.002001-1) ... Setting up libstruct-dumb-perl (0.09-1) ... Setting up libyaml-0-2:amd64 (0.2.1-1) ... Setting up patchutils (0.3.4-2) ... Setting up liburi-perl (1.76-1) ... Setting up t1utils (1.41-3) ... Setting up libhtml-parser-perl (3.72-3+b3) ... Setting up libipc-run-perl (20180523.0-1) ... Setting up libcgi-pm-perl (4.40-1) ... Setting up libsqlite3-0:amd64 (3.26.0+fossilbc891ac6b-2) ... Setting up libdigest-hmac-perl (1.03+dfsg-2) ... Setting up libio-async-perl (0.72-1) ... Setting up libclone-perl (0.41-1+b1) ... Setting up libsub-name-perl (0.21-1+b3) ... Setting up libyaml-libyaml-perl (0.76+repack-1) ... Setting up libassuan0:amd64 (2.5.2-1) ... Setting up diffstat (1.62-1) ... Setting up libclass-accessor-perl (0.51-1) ... Setting up netbase (5.5) ... Setting up liblist-moreutils-perl (0.416-1+b4) ... Setting up libnet-ssleay-perl (1.85-2+b1) ... Setting up gpgconf (2.2.12-1) ... Setting up libnet-dns-perl (1.19-1) ... Setting up libio-socket-ssl-perl (2.060-3) ... Setting up libparse-debianchangelog-perl (1.2.0-13) ... Setting up gpg (2.2.12-1) ... Setting up libnet-smtp-ssl-perl (1.04-1) ... Setting up libmailtools-perl (2.18-1) ... Setting up libemail-valid-perl (1.202-1) ... Setting up lintian (2.6.0) ... Setting up sbuild-build-depends-lintian-dummy:armel (0.invalid.0) ... Processing triggers for man-db (2.8.5-1) ... Not building database; man-db/auto-update is not 'true'. Processing triggers for libc-bin (2.28-6) ... I: Lintian run was successful. +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ libminc_2.4.03-2_armel.changes: ------------------------------- Format: 1.8 Date: Thu, 30 Aug 2018 18:44:55 +0200 Source: libminc Binary: libminc-dev libminc2-5.2.0 libminc2-5.2.0-dbgsym Built-For-Profiles: cross nocheck Architecture: armel Version: 2.4.03-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Gert Wollny Description: libminc-dev - MNI medical image format development environment libminc2-5.2.0 - MNI medical image format library Closes: 907553 Changes: libminc (2.4.03-2) unstable; urgency=medium . * Team upload * d/: Install cmake file in the correct location Closes: #907553 (locutusofborg) Checksums-Sha1: 1639844308ef1a8f2aaa802cdf18c11cfb7b4165 73608 libminc-dev_2.4.03-2_armel.deb 810f28ae1de7a418668324df2bf1e2207afcd957 771920 libminc2-5.2.0-dbgsym_2.4.03-2_armel.deb b9ea735c1158cc50326d152736bb32bf55753a8a 204128 libminc2-5.2.0_2.4.03-2_armel.deb 9366567d82885001fbf9ac3fae7c6e3d88e63751 6198 libminc_2.4.03-2_armel.buildinfo Checksums-Sha256: 976d629c666e815f42fdd6f6f63742374b52aba693cc875b611c46a6ee85d49e 73608 libminc-dev_2.4.03-2_armel.deb 1168b31a64f125a5c649b091245c74a9a8aa91ae96c5606e5b77ea42a052d0e1 771920 libminc2-5.2.0-dbgsym_2.4.03-2_armel.deb 61231713f2cd9f47e2d66f162dabaaa9f7fba92c350aab5cb903402cc58eff1d 204128 libminc2-5.2.0_2.4.03-2_armel.deb 30a493676ff9fbe60b5c51103acff939d1160de750df3d419f2cd9e41aa4e2e7 6198 libminc_2.4.03-2_armel.buildinfo Files: 80406510d20559d200b640addc701cca 73608 libdevel optional libminc-dev_2.4.03-2_armel.deb 67bc38ba575b007451a64fe3e21737ee 771920 debug optional libminc2-5.2.0-dbgsym_2.4.03-2_armel.deb 5d650b237601cf64bc36a0d6ccde6577 204128 libs optional libminc2-5.2.0_2.4.03-2_armel.deb 53986e69536bedfe7d7f0c2bcbe589b1 6198 science optional libminc_2.4.03-2_armel.buildinfo +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: libminc Binary: libminc2-5.2.0 libminc-dev Architecture: armel Version: 2.4.03-2 Checksums-Md5: 80406510d20559d200b640addc701cca 73608 libminc-dev_2.4.03-2_armel.deb 67bc38ba575b007451a64fe3e21737ee 771920 libminc2-5.2.0-dbgsym_2.4.03-2_armel.deb 5d650b237601cf64bc36a0d6ccde6577 204128 libminc2-5.2.0_2.4.03-2_armel.deb Checksums-Sha1: 1639844308ef1a8f2aaa802cdf18c11cfb7b4165 73608 libminc-dev_2.4.03-2_armel.deb 810f28ae1de7a418668324df2bf1e2207afcd957 771920 libminc2-5.2.0-dbgsym_2.4.03-2_armel.deb b9ea735c1158cc50326d152736bb32bf55753a8a 204128 libminc2-5.2.0_2.4.03-2_armel.deb Checksums-Sha256: 976d629c666e815f42fdd6f6f63742374b52aba693cc875b611c46a6ee85d49e 73608 libminc-dev_2.4.03-2_armel.deb 1168b31a64f125a5c649b091245c74a9a8aa91ae96c5606e5b77ea42a052d0e1 771920 libminc2-5.2.0-dbgsym_2.4.03-2_armel.deb 61231713f2cd9f47e2d66f162dabaaa9f7fba92c350aab5cb903402cc58eff1d 204128 libminc2-5.2.0_2.4.03-2_armel.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Fri, 08 Feb 2019 19:47:04 +0000 Build-Path: /<> Installed-Build-Depends: autoconf (= 2.69-11), automake (= 1:1.16.1-4), autopoint (= 0.19.8.1-9), autotools-dev (= 20180224.1), base-files (= 10.1), base-passwd (= 3.5.45), bash (= 5.0-2), binutils (= 2.31.1-12), binutils-common (= 2.31.1-12), binutils-x86-64-linux-gnu (= 2.31.1-12), bsdmainutils (= 11.1.2+b1), bsdutils (= 1:2.33.1-0.1), build-essential (= 12.5), bzip2 (= 1.0.6-9), cmake (= 3.13.2-1), cmake-data (= 3.13.2-1), coreutils (= 8.30-1), cpp (= 4:8.2.0-2), cpp-8 (= 8.2.0-17), dash (= 0.5.10.2-5), debconf (= 1.5.70), debhelper (= 12), debianutils (= 4.8.6.1), dh-autoreconf (= 19), dh-exec (= 0.23.1), dh-strip-nondeterminism (= 1.1.0-1), diffutils (= 1:3.6-1), dpkg (= 1.19.4), dpkg-dev (= 1.19.4), dwz (= 0.12-3), fdisk (= 2.33.1-0.1), file (= 1:5.35-2), findutils (= 4.6.0+git+20190105-2), g++ (= 4:8.2.0-2), g++-8 (= 8.2.0-17), gcc (= 4:8.2.0-2), gcc-8 (= 8.2.0-17), gcc-8-base (= 8.2.0-17), gettext (= 0.19.8.1-9), gettext-base (= 0.19.8.1-9), grep (= 3.3-1), groff-base (= 1.22.4-2), gzip (= 1.9-3), hdf5-helpers (= 1.10.4+repack-10), hostname (= 3.21), init-system-helpers (= 1.56+nmu1), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.2.52-3+b1), libaec-dev (= 1.0.2-1), libaec0 (= 1.0.2-1), libarchive-zip-perl (= 1.64-1), libarchive13 (= 3.3.3-4), libasan5 (= 8.2.0-17), libatomic1 (= 8.2.0-17), libattr1 (= 1:2.4.47-2+b2), libaudit-common (= 1:2.8.4-2), libaudit1 (= 1:2.8.4-2), libbinutils (= 2.31.1-12), libblkid1 (= 2.33.1-0.1), libbsd0 (= 0.9.1-1), libbz2-1.0 (= 1.0.6-9), libc-bin (= 2.28-6), libc-dev-bin (= 2.28-6), libc6 (= 2.28-6), libc6-dev (= 2.28-6), libcap-ng0 (= 0.7.9-2), libcc1-0 (= 8.2.0-17), libcom-err2 (= 1.44.5-1), libcroco3 (= 0.6.12-3), libcurl3-gnutls (= 7.64.0-1), libcurl4 (= 7.64.0-1), libcurl4-gnutls-dev (= 7.64.0-1), libdb5.3 (= 5.3.28+dfsg1-0.3), libdebconfclient0 (= 0.246), libdpkg-perl (= 1.19.4), libelf1 (= 0.175-2), libexpat1 (= 2.2.6-1), libfdisk1 (= 2.33.1-0.1), libffi6 (= 3.2.1-9), libfile-stripnondeterminism-perl (= 1.1.0-1), libgcc-8-dev (= 8.2.0-17), libgcc1 (= 1:8.2.0-17), libgcrypt20 (= 1.8.4-5), libgdbm-compat4 (= 1.18.1-2), libgdbm6 (= 1.18.1-2), libgfortran5 (= 8.2.0-17), libglib2.0-0 (= 2.58.3-1), libgmp10 (= 2:6.1.2+dfsg-4), libgnutls30 (= 3.6.6-2), libgomp1 (= 8.2.0-17), libgpg-error0 (= 1.35-1), libgssapi-krb5-2 (= 1.17-1), libhdf5-103 (= 1.10.4+repack-10), libhdf5-cpp-103 (= 1.10.4+repack-10), libhdf5-dev (= 1.10.4+repack-10), libhogweed4 (= 3.4.1-1), libicu63 (= 63.1-6), libidn2-0 (= 2.0.5-1), libisl19 (= 0.20-2), libitm1 (= 8.2.0-17), libjpeg62-turbo (= 1:1.5.2-2+b1), libjpeg62-turbo-dev (= 1:1.5.2-2+b1), libjsoncpp1 (= 1.7.4-3), libk5crypto3 (= 1.17-1), libkeyutils1 (= 1.5.9-10), libkrb5-3 (= 1.17-1), libkrb5support0 (= 1.17-1), libldap-2.4-2 (= 2.4.47+dfsg-3), libldap-common (= 2.4.47+dfsg-3), liblsan0 (= 8.2.0-17), liblz4-1 (= 1.8.3-1), liblzma5 (= 5.2.4-1), libmagic-mgc (= 1:5.35-2), libmagic1 (= 1:5.35-2), libmount1 (= 2.33.1-0.1), libmpc3 (= 1.1.0-1), libmpfr6 (= 4.0.2-1), libmpx2 (= 8.2.0-17), libncurses6 (= 6.1+20181013-1), libncursesw6 (= 6.1+20181013-1), libnetcdf-dev (= 1:4.6.2-1), libnetcdf13 (= 1:4.6.2-1), libnettle6 (= 3.4.1-1), libnghttp2-14 (= 1.36.0-2), libnifti-dev (= 2.0.0-3), libnifti2 (= 2.0.0-3), libp11-kit0 (= 0.23.14-2), libpam-modules (= 1.1.8-4), libpam-modules-bin (= 1.1.8-4), libpam-runtime (= 1.1.8-4), libpam0g (= 1.1.8-4), libpcre3 (= 2:8.39-11), libperl5.28 (= 5.28.1-4), libpipeline1 (= 1.5.1-1), libprocps7 (= 2:3.3.15-2), libpsl5 (= 0.20.2-2), libquadmath0 (= 8.2.0-17), librhash0 (= 1.3.8-1), librtmp1 (= 2.4+20151223.gitfa8646d.1-2), libsasl2-2 (= 2.1.27+dfsg-1), libsasl2-modules-db (= 2.1.27+dfsg-1), libseccomp2 (= 2.3.3-3), libselinux1 (= 2.8-1+b1), libsigsegv2 (= 2.12-2), libsmartcols1 (= 2.33.1-0.1), libssh2-1 (= 1.8.0-2), libssl1.1 (= 1.1.1a-1), libstdc++-8-dev (= 8.2.0-17), libstdc++6 (= 8.2.0-17), libsystemd0 (= 240-5), libsz2 (= 1.0.2-1), libtasn1-6 (= 4.13-3), libtinfo6 (= 6.1+20181013-1), libtool (= 2.4.6-9), libtsan0 (= 8.2.0-17), libubsan1 (= 8.2.0-17), libuchardet0 (= 0.0.6-3), libudev1 (= 240-5), libunistring2 (= 0.9.10-1), libuuid1 (= 2.33.1-0.1), libuv1 (= 1.24.1-1), libxml2 (= 2.9.4+dfsg1-7+b3), libzstd1 (= 1.3.8+dfsg-3), linux-libc-dev (= 4.19.16-1), login (= 1:4.5-1.1), lsb-base (= 10.2018112800), m4 (= 1.4.18-2), make (= 4.2.1-1.2), man-db (= 2.8.5-1), mawk (= 1.3.3-17+b3), ncurses-base (= 6.1+20181013-1), ncurses-bin (= 6.1+20181013-1), patch (= 2.7.6-3), perl (= 5.28.1-4), perl-base (= 5.28.1-4), perl-modules-5.28 (= 5.28.1-4), po-debconf (= 1.0.21), procps (= 2:3.3.15-2), sed (= 4.7-1), sensible-utils (= 0.0.12), sysvinit-utils (= 2.93-6), tar (= 1.30+dfsg-5), util-linux (= 2.33.1-0.1), xz-utils (= 5.2.4-1), zlib1g (= 1:1.2.11.dfsg-1), zlib1g-dev (= 1:1.2.11.dfsg-1) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="en_US.UTF-8" LC_ALL="POSIX" SOURCE_DATE_EPOCH="1535647495" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ libminc-dev_2.4.03-2_armel.deb ------------------------------ new Debian package, version 2.0. size 73608 bytes: control archive=2220 bytes. 1208 bytes, 27 lines control 3020 bytes, 46 lines md5sums Package: libminc-dev Source: libminc Version: 2.4.03-2 Architecture: armel Maintainer: Debian Med Packaging Team Installed-Size: 396 Depends: libminc2-5.2.0 (= 2.4.03-2), libnetcdf-dev, libhdf5-dev Conflicts: libminc0-dev Replaces: libminc0-dev Section: libdevel Priority: optional Homepage: https://github.com/BIC-MNI/libminc Description: MNI medical image format development environment This package contains the library and headers for libminc2 and libminc_io. . The Minc file format is a highly flexible medical image file format. Minc version 1 is built on top of the NetCDF generalized data format. Minc version 2 is built on top of the HDF data format. This library handles both formats. In each case the format is simple, self-describing, extensible, portable and N-dimensional, with programming interfaces for both low-level data access and high-level volume manipulation. On top of the libraries is a suite of generic image-file manipulation tools. The format, libraries and tools are designed for use in a medical-imaging research environment : they are simple and powerful and make no attempt to provide a pretty interface to users. drwxr-xr-x root/root 0 2018-08-30 16:44 ./ drwxr-xr-x root/root 0 2018-08-30 16:44 ./usr/ drwxr-xr-x root/root 0 2018-08-30 16:44 ./usr/include/ -rw-r--r-- root/root 2494 2018-05-19 18:27 ./usr/include/ParseArgv.h -rw-r--r-- root/root 25408 2018-05-19 18:27 ./usr/include/minc.h -rw-r--r-- root/root 257 2018-05-19 18:27 ./usr/include/minc2.h -rw-r--r-- root/root 55236 2018-05-19 18:27 ./usr/include/minc2_api.h -rw-r--r-- root/root 187 2018-05-19 18:27 ./usr/include/minc2_defs.h -rw-r--r-- root/root 1511 2018-05-19 18:27 ./usr/include/minc2_error.h -rw-r--r-- root/root 7139 2018-05-19 18:27 ./usr/include/minc2_structs.h -rw-r--r-- root/root 13997 2018-05-19 18:27 ./usr/include/minc_1_rw.h -rw-r--r-- root/root 7736 2018-05-19 18:27 ./usr/include/minc_1_simple.h -rw-r--r-- root/root 10048 2018-05-19 18:27 ./usr/include/minc_1_simple_rw.h -rw-r--r-- root/root 15111 2018-05-19 18:27 ./usr/include/minc_common_defs.h -rw-r--r-- root/root 2978 2018-05-19 18:27 ./usr/include/minc_compat.h -rw-r--r-- root/root 495 2018-05-19 18:27 ./usr/include/minc_config.h -rw-r--r-- root/root 6095 2018-05-19 18:27 ./usr/include/minc_error.h -rw-r--r-- root/root 988 2018-05-19 18:27 ./usr/include/minc_format_convert.h -rw-r--r-- root/root 3814 2018-05-19 18:27 ./usr/include/minc_io_4d_volume.h -rw-r--r-- root/root 1758 2018-05-19 18:27 ./usr/include/minc_io_exceptions.h -rw-r--r-- root/root 8993 2018-05-19 18:27 ./usr/include/minc_io_fixed_vector.h -rw-r--r-- root/root 16161 2018-05-19 18:27 ./usr/include/minc_io_simple_volume.h -rw-r--r-- root/root 3323 2018-05-19 18:27 ./usr/include/minc_simple.h -rw-r--r-- root/root 2942 2018-05-19 18:27 ./usr/include/nd_loop.h -rw-r--r-- root/root 785 2018-05-19 18:27 ./usr/include/read_file_names.h -rw-r--r-- root/root 531 2018-05-19 18:27 ./usr/include/restructure.h -rw-r--r-- root/root 2122 2018-05-19 18:27 ./usr/include/time_stamp.h -rw-r--r-- root/root 2062 2018-05-19 18:27 ./usr/include/volume_io.h drwxr-xr-x root/root 0 2018-08-30 16:44 ./usr/include/volume_io/ -rw-r--r-- root/root 10972 2018-05-19 18:27 ./usr/include/volume_io/alloc.h -rw-r--r-- root/root 6763 2018-05-19 18:27 ./usr/include/volume_io/arrays.h -rw-r--r-- root/root 5006 2018-05-19 18:27 ./usr/include/volume_io/basic.h -rw-r--r-- root/root 1007 2018-05-19 18:27 ./usr/include/volume_io/def_math.h -rw-r--r-- root/root 1617 2018-05-19 18:27 ./usr/include/volume_io/files.h -rw-r--r-- root/root 8342 2018-05-19 18:27 ./usr/include/volume_io/geom_structs.h -rw-r--r-- root/root 8978 2018-05-19 18:27 ./usr/include/volume_io/geometry.h -rw-r--r-- root/root 11723 2018-05-19 18:27 ./usr/include/volume_io/multidim.h -rw-r--r-- root/root 1945 2018-05-19 18:27 ./usr/include/volume_io/progress.h -rw-r--r-- root/root 1761 2018-05-19 18:27 ./usr/include/volume_io/string_funcs.h -rw-r--r-- root/root 1614 2018-05-19 18:27 ./usr/include/volume_io/system_dependent.h -rw-r--r-- root/root 3299 2018-05-19 18:27 ./usr/include/volume_io/transforms.h -rw-r--r-- root/root 56832 2018-05-19 18:27 ./usr/include/volume_io/vol_io_prototypes.h -rw-r--r-- root/root 19145 2018-05-19 18:27 ./usr/include/volume_io/volume.h -rw-r--r-- root/root 3870 2018-05-19 18:27 ./usr/include/volume_io/volume_cache.h -rw-r--r-- root/root 15151 2018-05-19 18:27 ./usr/include/voxel_loop.h drwxr-xr-x root/root 0 2018-08-30 16:44 ./usr/lib/ drwxr-xr-x root/root 0 2018-08-30 16:44 ./usr/lib/arm-linux-gnueabi/ drwxr-xr-x root/root 0 2018-08-30 16:44 ./usr/lib/arm-linux-gnueabi/cmake/ drwxr-xr-x root/root 0 2018-08-30 16:44 ./usr/lib/arm-linux-gnueabi/cmake/LIBMINC/ -rw-r--r-- root/root 2118 2018-08-30 16:44 ./usr/lib/arm-linux-gnueabi/cmake/LIBMINC/LIBMINCConfig.cmake -rw-r--r-- root/root 343 2018-08-30 16:44 ./usr/lib/arm-linux-gnueabi/cmake/LIBMINC/UseLIBMINC.cmake lrwxrwxrwx root/root 0 2018-08-30 16:44 ./usr/lib/arm-linux-gnueabi/libminc2.so -> libminc2.so.5.2.0 lrwxrwxrwx root/root 0 2018-08-30 16:44 ./usr/lib/arm-linux-gnueabi/libminc_io.so -> libminc_io.so.5.2.0 drwxr-xr-x root/root 0 2018-08-30 16:44 ./usr/share/ drwxr-xr-x root/root 0 2018-08-30 16:44 ./usr/share/doc/ drwxr-xr-x root/root 0 2018-08-30 16:44 ./usr/share/doc/libminc-dev/ -rw-r--r-- root/root 4997 2018-08-30 16:44 ./usr/share/doc/libminc-dev/changelog.Debian.gz -rw-r--r-- root/root 13424 2018-05-19 18:27 ./usr/share/doc/libminc-dev/changelog.gz -rw-r--r-- root/root 1058 2018-08-30 16:44 ./usr/share/doc/libminc-dev/copyright libminc2-5.2.0-dbgsym_2.4.03-2_armel.deb ---------------------------------------- new Debian package, version 2.0. size 771920 bytes: control archive=620 bytes. 451 bytes, 13 lines control 212 bytes, 2 lines md5sums Package: libminc2-5.2.0-dbgsym Source: libminc Version: 2.4.03-2 Auto-Built-Package: debug-symbols Architecture: armel Maintainer: Debian Med Packaging Team Installed-Size: 870 Depends: libminc2-5.2.0 (= 2.4.03-2) Section: debug Priority: optional Multi-Arch: same Description: debug symbols for libminc2-5.2.0 Build-Ids: 3a8db626bb3a7a1c2ee26e7ad1c193d49b07c7e6 c79ad52988b58dec05f8b61b1dc1f5701532b7e6 drwxr-xr-x root/root 0 2018-08-30 16:44 ./ drwxr-xr-x root/root 0 2018-08-30 16:44 ./usr/ drwxr-xr-x root/root 0 2018-08-30 16:44 ./usr/lib/ drwxr-xr-x root/root 0 2018-08-30 16:44 ./usr/lib/debug/ drwxr-xr-x root/root 0 2018-08-30 16:44 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2018-08-30 16:44 ./usr/lib/debug/.build-id/3a/ -rw-r--r-- root/root 668328 2018-08-30 16:44 ./usr/lib/debug/.build-id/3a/8db626bb3a7a1c2ee26e7ad1c193d49b07c7e6.debug drwxr-xr-x root/root 0 2018-08-30 16:44 ./usr/lib/debug/.build-id/c7/ -rw-r--r-- root/root 209944 2018-08-30 16:44 ./usr/lib/debug/.build-id/c7/9ad52988b58dec05f8b61b1dc1f5701532b7e6.debug drwxr-xr-x root/root 0 2018-08-30 16:44 ./usr/share/ drwxr-xr-x root/root 0 2018-08-30 16:44 ./usr/share/doc/ lrwxrwxrwx root/root 0 2018-08-30 16:44 ./usr/share/doc/libminc2-5.2.0-dbgsym -> libminc2-5.2.0 libminc2-5.2.0_2.4.03-2_armel.deb --------------------------------- new Debian package, version 2.0. size 204128 bytes: control archive=1212 bytes. 1212 bytes, 25 lines control 390 bytes, 5 lines md5sums 62 bytes, 2 lines shlibs 63 bytes, 2 lines triggers Package: libminc2-5.2.0 Source: libminc Version: 2.4.03-2 Architecture: armel Maintainer: Debian Med Packaging Team Installed-Size: 524 Depends: libc6 (>= 2.4), libgcc1 (>= 1:3.5), libhdf5-103, libnetcdf13 (>= 3.6.1), libstdc++6 (>= 5.2), libsz2, zlib1g (>= 1:1.1.4) Section: libs Priority: optional Multi-Arch: same Homepage: https://github.com/BIC-MNI/libminc Description: MNI medical image format library This package contains the libraries libminc2 and libminc_io. . The Minc file format is a highly flexible medical image file format. Minc version 1 is built on top of the NetCDF generalized data format. Minc version 2 is built on top of the HDF data format. This library handles both formats. In each case the format is simple, self-describing, extensible, portable and N-dimensional, with programming interfaces for both low-level data access and high-level volume manipulation. On top of the libraries is a suite of generic image-file manipulation tools. The format, libraries and tools are designed for use in a medical-imaging research environment : they are simple and powerful and make no attempt to provide a pretty interface to users. drwxr-xr-x root/root 0 2018-08-30 16:44 ./ drwxr-xr-x root/root 0 2018-08-30 16:44 ./usr/ drwxr-xr-x root/root 0 2018-08-30 16:44 ./usr/lib/ drwxr-xr-x root/root 0 2018-08-30 16:44 ./usr/lib/arm-linux-gnueabi/ -rw-r--r-- root/root 444756 2018-08-30 16:44 ./usr/lib/arm-linux-gnueabi/libminc2.so.5.2.0 -rw-r--r-- root/root 58780 2018-08-30 16:44 ./usr/lib/arm-linux-gnueabi/libminc_io.so.5.2.0 drwxr-xr-x root/root 0 2018-08-30 16:44 ./usr/share/ drwxr-xr-x root/root 0 2018-08-30 16:44 ./usr/share/doc/ drwxr-xr-x root/root 0 2018-08-30 16:44 ./usr/share/doc/libminc2-5.2.0/ -rw-r--r-- root/root 4997 2018-08-30 16:44 ./usr/share/doc/libminc2-5.2.0/changelog.Debian.gz -rw-r--r-- root/root 13424 2018-05-19 18:27 ./usr/share/doc/libminc2-5.2.0/changelog.gz -rw-r--r-- root/root 1058 2018-08-30 16:44 ./usr/share/doc/libminc2-5.2.0/copyright +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 37012 Build-Time: 102 Distribution: unstable Foreign Architectures: armel Host Architecture: armel Install-Time: 25 Job: libminc_2.4.03-2 Lintian: pass Machine Architecture: amd64 Package: libminc Package-Time: 139 Source-Version: 2.4.03-2 Space: 37012 Status: successful Version: 2.4.03-2 -------------------------------------------------------------------------------- Finished at 2019-02-08T19:47:04Z Build needed 00:02:19, 37012k disk space