sbuild (Debian sbuild) 0.78.1 (09 February 2019) on mjolnir +==============================================================================+ | libmuscle 3.7+4565-7 (i386) Thu, 30 Dec 2021 20:30:12 +0000 | +==============================================================================+ Package: libmuscle Version: 3.7+4565-7 Source Version: 3.7+4565-7 Distribution: unstable Machine Architecture: arm64 Host Architecture: i386 Build Architecture: arm64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/crossqa-sid-9406fdd5-a0ac-4fb7-aab2-34f0112c201f' with '<>' I: NOTICE: Log filtering will replace 'build/libmuscle-wSdXTj/resolver-fzqDEP' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://mirror.einval.org/debian sid InRelease [165 kB] Ign:2 http://mirror.einval.org/debian sid/main Sources.diff/Index Ign:3 http://mirror.einval.org/debian sid/main arm64 Packages.diff/Index Get:2 http://mirror.einval.org/debian sid/main Sources.diff/Index [63.6 kB] Ign:2 http://mirror.einval.org/debian sid/main Sources.diff/Index Ign:3 http://mirror.einval.org/debian sid/main arm64 Packages.diff/Index Get:4 http://mirror.einval.org/debian sid/main i386 Packages [8777 kB] Get:5 http://mirror.einval.org/debian sid/main Sources [9423 kB] Get:6 http://mirror.einval.org/debian sid/main arm64 Packages [8727 kB] Fetched 27.1 MB in 7s (3819 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'libmuscle' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/libmuscle.git Please use: git clone https://salsa.debian.org/med-team/libmuscle.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 199 kB of source archives. Get:1 http://mirror.einval.org/debian sid/main libmuscle 3.7+4565-7 (dsc) [2078 B] Get:2 http://mirror.einval.org/debian sid/main libmuscle 3.7+4565-7 (tar) [184 kB] Get:3 http://mirror.einval.org/debian sid/main libmuscle 3.7+4565-7 (diff) [12.4 kB] Fetched 199 kB in 0s (4060 kB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/libmuscle-wSdXTj/libmuscle-3.7+4565' with '<>' I: NOTICE: Log filtering will replace 'build/libmuscle-wSdXTj' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), d-shlibs, pkg-config, libc-dev, libstdc++-dev, build-essential:arm64, fakeroot:arm64, crossbuild-essential-i386:arm64, libc-dev:i386, libstdc++-dev:i386 Filtered Build-Depends: debhelper-compat (= 13), d-shlibs, pkg-config, libc-dev, libstdc++-dev, build-essential:arm64, fakeroot:arm64, crossbuild-essential-i386:arm64, libc-dev:i386, libstdc++-dev:i386 dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [418 B] Get:5 copy:/<>/apt_archive ./ Packages [508 B] Fetched 1883 B in 0s (45.6 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-i686-linux-gnu bsdextrautils cpp-11-i686-linux-gnu cpp-i686-linux-gnu cross-config crossbuild-essential-i386 d-shlibs debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz file g++-11-i686-linux-gnu g++-i686-linux-gnu gcc-11-base:i386 gcc-11-cross-base gcc-11-i686-linux-gnu gcc-11-i686-linux-gnu-base gcc-i686-linux-gnu gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan6:i386 libasan6-i386-cross libatomic1:i386 libatomic1-i386-cross libc6:i386 libc6-dev:i386 libc6-dev-i386-cross libc6-i386-cross libcom-err2:i386 libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev:i386 libcrypt1:i386 libdebhelper-perl libdebian-dpkgcross-perl libelf1 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-11-dev:i386 libgcc-11-dev-i386-cross libgcc-s1:i386 libgcc-s1-i386-cross libglib2.0-0 libgomp1:i386 libgomp1-i386-cross libgssapi-krb5-2:i386 libicu67 libio-string-perl libitm1:i386 libitm1-i386-cross libk5crypto3:i386 libkeyutils1:i386 libkrb5-3:i386 libkrb5support0:i386 liblocale-gettext-perl libmagic-mgc libmagic1 libnsl-dev:i386 libnsl2:i386 libpipeline1 libquadmath0:i386 libquadmath0-i386-cross libsigsegv2 libssl1.1:i386 libstdc++-11-dev:i386 libstdc++-11-dev-i386-cross libstdc++6:i386 libstdc++6-i386-cross libsub-override-perl libtirpc-dev:i386 libtirpc3:i386 libtool libubsan1:i386 libubsan1-i386-cross libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:i386 linux-libc-dev-i386-cross m4 man-db pkg-config po-debconf sensible-utils ucf Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc gcc-11-locales cpp-doc dh-make binutils-multiarch g++-11-multilib-i686-linux-gnu gcc-11-doc gcc-11-multilib-i686-linux-gnu manpages-dev flex bison gdb-i686-linux-gnu gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff glibc-doc:i386 libc-l10n:i386 locales:i386 libnss-nis:i386 libnss-nisplus:i386 manpages-dev:i386 krb5-doc:i386 krb5-user:i386 libstdc++-11-doc:i386 libtool-doc gfortran | fortran95-compiler gcj-jdk libyaml-shell-perl m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libidn2-0:i386 libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs krb5-locales:i386 libltdl-dev libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-i686-linux-gnu bsdextrautils cpp-11-i686-linux-gnu cpp-i686-linux-gnu cross-config crossbuild-essential-i386 d-shlibs debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz file g++-11-i686-linux-gnu g++-i686-linux-gnu gcc-11-base:i386 gcc-11-cross-base gcc-11-i686-linux-gnu gcc-11-i686-linux-gnu-base gcc-i686-linux-gnu gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan6:i386 libasan6-i386-cross libatomic1:i386 libatomic1-i386-cross libc6:i386 libc6-dev:i386 libc6-dev-i386-cross libc6-i386-cross libcom-err2:i386 libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev:i386 libcrypt1:i386 libdebhelper-perl libdebian-dpkgcross-perl libelf1 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-11-dev:i386 libgcc-11-dev-i386-cross libgcc-s1:i386 libgcc-s1-i386-cross libglib2.0-0 libgomp1:i386 libgomp1-i386-cross libgssapi-krb5-2:i386 libicu67 libio-string-perl libitm1:i386 libitm1-i386-cross libk5crypto3:i386 libkeyutils1:i386 libkrb5-3:i386 libkrb5support0:i386 liblocale-gettext-perl libmagic-mgc libmagic1 libnsl-dev:i386 libnsl2:i386 libpipeline1 libquadmath0:i386 libquadmath0-i386-cross libsigsegv2 libssl1.1:i386 libstdc++-11-dev:i386 libstdc++-11-dev-i386-cross libstdc++6:i386 libstdc++6-i386-cross libsub-override-perl libtirpc-dev:i386 libtirpc3:i386 libtool libubsan1:i386 libubsan1-i386-cross libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:i386 linux-libc-dev-i386-cross m4 man-db pkg-config po-debconf sbuild-build-depends-main-dummy:i386 sensible-utils ucf 0 upgraded, 101 newly installed, 0 to remove and 0 not upgraded. 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Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [932 B] Get:2 http://mirror.einval.org/debian sid/main arm64 liblocale-gettext-perl arm64 1.07-4+b1 [18.9 kB] Get:3 http://mirror.einval.org/debian sid/main arm64 sensible-utils all 0.0.17 [21.5 kB] Get:4 http://mirror.einval.org/debian sid/main arm64 libmagic-mgc arm64 1:5.41-2 [295 kB] Get:5 http://mirror.einval.org/debian sid/main arm64 libmagic1 arm64 1:5.41-2 [124 kB] Get:6 http://mirror.einval.org/debian sid/main arm64 file arm64 1:5.41-2 [66.8 kB] Get:7 http://mirror.einval.org/debian sid/main arm64 gettext-base arm64 0.21-4 [173 kB] Get:8 http://mirror.einval.org/debian sid/main arm64 libuchardet0 arm64 0.0.7-1 [67.9 kB] Get:9 http://mirror.einval.org/debian sid/main arm64 groff-base arm64 1.22.4-8 [882 kB] Get:10 http://mirror.einval.org/debian sid/main arm64 bsdextrautils arm64 2.37.2-5 [144 kB] Get:11 http://mirror.einval.org/debian sid/main arm64 libpipeline1 arm64 1.5.4-2 [34.5 kB] Get:12 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Get:23 http://mirror.einval.org/debian sid/main arm64 cross-config all 2.6.18+nmu2 [31.7 kB] Get:24 http://mirror.einval.org/debian sid/main arm64 binutils-i686-linux-gnu arm64 2.37-10 [2302 kB] Get:25 http://mirror.einval.org/debian sid/main arm64 gcc-11-cross-base all 11.2.0-9cross1 [201 kB] Get:26 http://mirror.einval.org/debian sid/main arm64 libc6-i386-cross all 2.33-1cross1 [1526 kB] Get:27 http://mirror.einval.org/debian sid/main arm64 libgcc-s1-i386-cross all 11.2.0-9cross1 [49.9 kB] Get:28 http://mirror.einval.org/debian sid/main arm64 libgomp1-i386-cross all 11.2.0-9cross1 [108 kB] Get:29 http://mirror.einval.org/debian sid/main arm64 libitm1-i386-cross all 11.2.0-9cross1 [27.3 kB] Get:30 http://mirror.einval.org/debian sid/main arm64 libatomic1-i386-cross all 11.2.0-9cross1 [7552 B] Get:31 http://mirror.einval.org/debian sid/main arm64 libasan6-i386-cross all 11.2.0-9cross1 [1927 kB] Get:32 http://mirror.einval.org/debian sid/main arm64 libstdc++6-i386-cross all 11.2.0-9cross1 [576 kB] Get:33 http://mirror.einval.org/debian sid/main arm64 libubsan1-i386-cross all 11.2.0-9cross1 [813 kB] Get:34 http://mirror.einval.org/debian sid/main arm64 libquadmath0-i386-cross all 11.2.0-9cross1 [226 kB] Get:35 http://mirror.einval.org/debian sid/main arm64 libgcc-11-dev-i386-cross all 11.2.0-9cross1 [2331 kB] Get:36 http://mirror.einval.org/debian sid/main arm64 gcc-11-i686-linux-gnu arm64 11.2.0-9cross1 [15.6 MB] Get:37 http://mirror.einval.org/debian sid/main arm64 gcc-i686-linux-gnu arm64 4:11.2.0-2 [1452 B] Get:38 http://mirror.einval.org/debian sid/main arm64 linux-libc-dev-i386-cross all 5.15.5-1cross1 [1576 kB] Get:39 http://mirror.einval.org/debian sid/main arm64 libc6-dev-i386-cross all 2.33-1cross1 [2170 kB] Get:40 http://mirror.einval.org/debian sid/main arm64 libstdc++-11-dev-i386-cross all 11.2.0-9cross1 [2002 kB] Get:41 http://mirror.einval.org/debian sid/main arm64 g++-11-i686-linux-gnu arm64 11.2.0-9cross1 [8672 kB] Get:42 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11.2.0-13 [207 kB] Get:74 http://mirror.einval.org/debian sid/main i386 libgcc-s1 i386 11.2.0-13 [49.8 kB] Get:75 http://mirror.einval.org/debian sid/main i386 libc6 i386 2.33-1 [2783 kB] Get:76 http://mirror.einval.org/debian sid/main i386 libasan6 i386 11.2.0-13 [1934 kB] Get:77 http://mirror.einval.org/debian sid/main i386 libatomic1 i386 11.2.0-13 [7712 B] Get:78 http://mirror.einval.org/debian sid/main i386 linux-libc-dev i386 5.15.5-2 [1457 kB] Get:79 http://mirror.einval.org/debian sid/main i386 libcrypt1 i386 1:4.4.27-1 [99.4 kB] Get:80 http://mirror.einval.org/debian sid/main i386 libcrypt-dev i386 1:4.4.27-1 [116 kB] Get:81 http://mirror.einval.org/debian sid/main i386 libcom-err2 i386 1.46.4-1 [75.6 kB] Get:82 http://mirror.einval.org/debian sid/main i386 libkrb5support0 i386 1.18.3-7 [68.6 kB] Get:83 http://mirror.einval.org/debian sid/main i386 libk5crypto3 i386 1.18.3-7 [117 kB] Get:84 http://mirror.einval.org/debian sid/main i386 libkeyutils1 i386 1.6.1-2 [15.9 kB] Get:85 http://mirror.einval.org/debian sid/main i386 libssl1.1 i386 1.1.1m-1 [1550 kB] Get:86 http://mirror.einval.org/debian sid/main i386 libkrb5-3 i386 1.18.3-7 [390 kB] Get:87 http://mirror.einval.org/debian sid/main i386 libgssapi-krb5-2 i386 1.18.3-7 [176 kB] Get:88 http://mirror.einval.org/debian sid/main i386 libtirpc3 i386 1.3.2-2 [91.3 kB] Get:89 http://mirror.einval.org/debian sid/main i386 libnsl2 i386 1.3.0-2 [42.2 kB] Get:90 http://mirror.einval.org/debian sid/main i386 libtirpc-dev i386 1.3.2-2 [201 kB] Get:91 http://mirror.einval.org/debian sid/main i386 libnsl-dev i386 1.3.0-2 [70.6 kB] Get:92 http://mirror.einval.org/debian sid/main i386 libc6-dev i386 2.33-1 [2172 kB] Get:93 http://mirror.einval.org/debian sid/main i386 libgomp1 i386 11.2.0-13 [111 kB] Get:94 http://mirror.einval.org/debian sid/main i386 libitm1 i386 11.2.0-13 [27.7 kB] Get:95 http://mirror.einval.org/debian sid/main i386 libstdc++6 i386 11.2.0-13 [617 kB] Get:96 http://mirror.einval.org/debian sid/main i386 libubsan1 i386 11.2.0-13 [814 kB] Get:97 http://mirror.einval.org/debian sid/main i386 libquadmath0 i386 11.2.0-13 [226 kB] Get:98 http://mirror.einval.org/debian sid/main i386 libgcc-11-dev i386 11.2.0-13 [2329 kB] Get:99 http://mirror.einval.org/debian sid/main arm64 libglib2.0-0 arm64 2.70.2-1 [1313 kB] Get:100 http://mirror.einval.org/debian sid/main i386 libstdc++-11-dev i386 11.2.0-13 [2027 kB] Get:101 http://mirror.einval.org/debian sid/main arm64 pkg-config arm64 0.29.2-1 [63.6 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 86.2 MB in 1s (75.7 MB/s) Selecting previously unselected package liblocale-gettext-perl. (Reading database ... 12350 files and directories currently installed.) Preparing to unpack .../000-liblocale-gettext-perl_1.07-4+b1_arm64.deb ... Unpacking liblocale-gettext-perl (1.07-4+b1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../001-sensible-utils_0.0.17_all.deb ... Unpacking sensible-utils (0.0.17) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../002-libmagic-mgc_1%3a5.41-2_arm64.deb ... Unpacking libmagic-mgc (1:5.41-2) ... Selecting previously unselected package libmagic1:arm64. Preparing to unpack .../003-libmagic1_1%3a5.41-2_arm64.deb ... Unpacking libmagic1:arm64 (1:5.41-2) ... Selecting previously unselected package file. Preparing to unpack .../004-file_1%3a5.41-2_arm64.deb ... Unpacking file (1:5.41-2) ... Selecting previously unselected package gettext-base. Preparing to unpack .../005-gettext-base_0.21-4_arm64.deb ... Unpacking gettext-base (0.21-4) ... 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Unpacking libstdc++-11-dev:i386 (11.2.0-13) ... Selecting previously unselected package pkg-config. Preparing to unpack .../099-pkg-config_0.29.2-1_arm64.deb ... Unpacking pkg-config (0.29.2-1) ... Selecting previously unselected package sbuild-build-depends-main-dummy:i386. Preparing to unpack .../100-sbuild-build-depends-main-dummy_0.invalid.0_i386.deb ... Unpacking sbuild-build-depends-main-dummy:i386 (0.invalid.0) ... Setting up libconfig-inifiles-perl (3.000003-1) ... Setting up gcc-11-i686-linux-gnu-base:arm64 (11.2.0-9cross1) ... Setting up libpipeline1:arm64 (1.5.4-2) ... Setting up gcc-11-base:i386 (11.2.0-13) ... Setting up libfile-which-perl (1.23-1) ... Setting up bsdextrautils (2.37.2-5) ... Setting up libicu67:arm64 (67.1-7) ... Setting up libmagic-mgc (1:5.41-2) ... Setting up cpp-11-i686-linux-gnu (11.2.0-9cross1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libglib2.0-0:arm64 (2.70.2-1) ... No schema files found: doing nothing. Setting up binutils-i686-linux-gnu (2.37-10) ... Setting up libdebhelper-perl (13.6) ... Setting up libmagic1:arm64 (1:5.41-2) ... Setting up linux-libc-dev:i386 (5.15.5-2) ... Setting up libxml-namespacesupport-perl (1.12-1.1) ... Setting up gettext-base (0.21-4) ... Setting up file (1:5.41-2) ... Setting up libyaml-perl (1.30-1) ... Setting up libxml-sax-base-perl (1.09-1.1) ... Setting up libio-string-perl (1.08-3.1) ... Setting up linux-libc-dev-i386-cross (5.15.5-1cross1) ... Setting up autotools-dev (20180224.1+nmu1) ... Setting up cross-config (2.6.18+nmu2) ... Setting up libsigsegv2:arm64 (2.13-1) ... Setting up autopoint (0.21-4) ... Setting up pkg-config (0.29.2-1) ... Setting up d-shlibs (0.104) ... Setting up gcc-11-cross-base (11.2.0-9cross1) ... Setting up sensible-utils (0.0.17) ... Setting up libuchardet0:arm64 (0.0.7-1) ... Setting up libc6-i386-cross (2.33-1cross1) ... Setting up libsub-override-perl (0.09-2) ... Setting up cpp-i686-linux-gnu (4:11.2.0-2) ... Setting up libfile-homedir-perl (1.006-1) ... Setting up libquadmath0-i386-cross (11.2.0-9cross1) ... Setting up libelf1:arm64 (0.186-1) ... Setting up libxml2:arm64 (2.9.12+dfsg-5+b1) ... Setting up liblocale-gettext-perl (1.07-4+b1) ... Setting up libfile-stripnondeterminism-perl (1.13.0-1) ... Setting up gettext (0.21-4) ... Setting up libtool (2.4.6-15) ... Setting up libatomic1-i386-cross (11.2.0-9cross1) ... Setting up m4 (1.4.18-5) ... Setting up libgomp1-i386-cross (11.2.0-9cross1) ... Setting up libc6-dev-i386-cross (2.33-1cross1) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libgcc-s1-i386-cross (11.2.0-9cross1) ... Setting up libasan6-i386-cross (11.2.0-9cross1) ... Setting up libitm1-i386-cross (11.2.0-9cross1) ... Setting up ucf (3.0043) ... Setting up autoconf (2.71-2) ... Setting up dh-strip-nondeterminism (1.13.0-1) ... Setting up dwz (0.14-1) ... Setting up groff-base (1.22.4-8) ... Setting up automake (1:1.16.5-1.1) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.9.4-4) ... Not building database; man-db/auto-update is not 'true'. Setting up libxml-sax-perl (1.02+dfsg-3) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libstdc++6-i386-cross (11.2.0-9cross1) ... Setting up dh-autoreconf (20) ... Setting up libxml-libxml-perl (2.0134+dfsg-2+b1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up debhelper (13.6) ... Setting up libubsan1-i386-cross (11.2.0-9cross1) ... Setting up libxml-simple-perl (2.25-1) ... Setting up libgcc-11-dev-i386-cross (11.2.0-9cross1) ... Setting up libconfig-auto-perl (0.44-1.1) ... Setting up gcc-11-i686-linux-gnu (11.2.0-9cross1) ... Setting up gcc-i686-linux-gnu (4:11.2.0-2) ... Setting up libstdc++-11-dev-i386-cross (11.2.0-9cross1) ... Setting up libdebian-dpkgcross-perl (2.6.18+nmu2) ... Setting up g++-11-i686-linux-gnu (11.2.0-9cross1) ... Setting up dpkg-cross (2.6.18+nmu2) ... Setting up g++-i686-linux-gnu (4:11.2.0-2) ... Setting up crossbuild-essential-i386 (12.9) ... Setting up libgcc-s1:i386 (11.2.0-13) ... Setting up libc6:i386 (2.33-1) ... Setting up libstdc++6:i386 (11.2.0-13) ... Setting up libitm1:i386 (11.2.0-13) ... Setting up libkeyutils1:i386 (1.6.1-2) ... Setting up libssl1.1:i386 (1.1.1m-1) ... Setting up libcrypt1:i386 (1:4.4.27-1) ... Setting up libcom-err2:i386 (1.46.4-1) ... Setting up libgomp1:i386 (11.2.0-13) ... Setting up libasan6:i386 (11.2.0-13) ... Setting up libkrb5support0:i386 (1.18.3-7) ... Setting up libquadmath0:i386 (11.2.0-13) ... Setting up libatomic1:i386 (11.2.0-13) ... Setting up libk5crypto3:i386 (1.18.3-7) ... Setting up libubsan1:i386 (11.2.0-13) ... Setting up libgcc-11-dev:i386 (11.2.0-13) ... Setting up libcrypt-dev:i386 (1:4.4.27-1) ... Setting up libkrb5-3:i386 (1.18.3-7) ... Setting up libgssapi-krb5-2:i386 (1.18.3-7) ... Setting up libtirpc3:i386 (1.3.2-2) ... Setting up libtirpc-dev:i386 (1.3.2-2) ... Setting up libnsl2:i386 (1.3.0-2) ... Setting up libnsl-dev:i386 (1.3.0-2) ... Setting up libc6-dev:i386 (2.33-1) ... Setting up libstdc++-11-dev:i386 (11.2.0-13) ... Setting up sbuild-build-depends-main-dummy:i386 (0.invalid.0) ... Processing triggers for libc-bin (2.33-1) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (i386 included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 5.9.0-0.bpo.2-arm64 #1 SMP Debian 5.9.6-1~bpo10+1 (2020-11-19) arm64 (aarch64) Toolchain package versions: binutils_2.37-10 dpkg-dev_1.21.1 g++-11_11.2.0-13 gcc-11_11.2.0-13 libc6-dev_2.33-1 libstdc++-11-dev_11.2.0-13 libstdc++-11-dev-i386-cross_11.2.0-9cross1 libstdc++6_11.2.0-13 libstdc++6-i386-cross_11.2.0-9cross1 linux-libc-dev_5.15.5-2 Package versions: adduser_3.118 apt_2.3.13 autoconf_2.71-2 automake_1:1.16.5-1.1 autopoint_0.21-4 autotools-dev_20180224.1+nmu1 base-files_12 base-passwd_3.5.52 bash_5.1-5+b1 binutils_2.37-10 binutils-aarch64-linux-gnu_2.37-10 binutils-common_2.37-10 binutils-i686-linux-gnu_2.37-10 bsdextrautils_2.37.2-5 bsdutils_1:2.37.2-5 build-essential_12.9 bzip2_1.0.8-5 coreutils_8.32-4.1 cpp_4:11.2.0-2 cpp-11_11.2.0-13 cpp-11-i686-linux-gnu_11.2.0-9cross1 cpp-i686-linux-gnu_4:11.2.0-2 cross-config_2.6.18+nmu2 crossbuild-essential-i386_12.9 d-shlibs_0.104 dash_0.5.11+git20210903+057cd650a4ed-3 debconf_1.5.79 debhelper_13.6 debian-archive-keyring_2021.1.1 debianutils_5.5-1 dh-autoreconf_20 dh-strip-nondeterminism_1.13.0-1 diffutils_1:3.7-5 dpkg_1.21.1 dpkg-cross_2.6.18+nmu2 dpkg-dev_1.21.1 dwz_0.14-1 fakeroot_1.26-1.1 file_1:5.41-2 findutils_4.8.0-1 g++_4:11.2.0-2 g++-11_11.2.0-13 g++-11-i686-linux-gnu_11.2.0-9cross1 g++-i686-linux-gnu_4:11.2.0-2 gcc_4:11.2.0-2 gcc-10-base_10.3.0-13 gcc-11_11.2.0-13 gcc-11-base_11.2.0-13 gcc-11-cross-base_11.2.0-9cross1 gcc-11-i686-linux-gnu_11.2.0-9cross1 gcc-11-i686-linux-gnu-base_11.2.0-9cross1 gcc-i686-linux-gnu_4:11.2.0-2 gettext_0.21-4 gettext-base_0.21-4 gpgv_2.2.27-3 grep_3.7-1 groff-base_1.22.4-8 gzip_1.10-4 hostname_3.23 init-system-helpers_1.61 intltool-debian_0.35.0+20060710.5 libacl1_2.3.1-1 libapt-pkg6.0_2.3.13 libarchive-zip-perl_1.68-1 libasan6_11.2.0-13 libasan6-i386-cross_11.2.0-9cross1 libatomic1_11.2.0-13 libatomic1-i386-cross_11.2.0-9cross1 libattr1_1:2.5.1-1 libaudit-common_1:3.0.6-1 libaudit1_1:3.0.6-1+b1 libbinutils_2.37-10 libblkid1_2.37.2-5 libbz2-1.0_1.0.8-5 libc-bin_2.33-1 libc-dev-bin_2.33-1 libc6_2.33-1 libc6-dev_2.33-1 libc6-dev-i386-cross_2.33-1cross1 libc6-i386-cross_2.33-1cross1 libcap-ng0_0.7.9-2.2+b1 libcap2_1:2.44-1 libcc1-0_11.2.0-13 libcom-err2_1.46.4-1 libconfig-auto-perl_0.44-1.1 libconfig-inifiles-perl_3.000003-1 libcrypt-dev_1:4.4.27-1 libcrypt1_1:4.4.27-1 libctf-nobfd0_2.37-10 libctf0_2.37-10 libdb5.3_5.3.28+dfsg1-0.8 libdebconfclient0_0.261 libdebhelper-perl_13.6 libdebian-dpkgcross-perl_2.6.18+nmu2 libdpkg-perl_1.21.1 libelf1_0.186-1 libfakeroot_1.26-1.1 libffi8_3.4.2-3 libfile-homedir-perl_1.006-1 libfile-stripnondeterminism-perl_1.13.0-1 libfile-which-perl_1.23-1 libgcc-11-dev_11.2.0-13 libgcc-11-dev-i386-cross_11.2.0-9cross1 libgcc-s1_11.2.0-13 libgcc-s1-i386-cross_11.2.0-9cross1 libgcrypt20_1.9.4-5 libgdbm-compat4_1.22-1 libgdbm6_1.22-1 libglib2.0-0_2.70.2-1 libgmp10_2:6.2.1+dfsg-3 libgnutls30_3.7.2-4 libgomp1_11.2.0-13 libgomp1-i386-cross_11.2.0-9cross1 libgpg-error0_1.43-1 libgssapi-krb5-2_1.18.3-7 libhogweed6_3.7.3-1 libhwasan0_11.2.0-13 libicu67_67.1-7 libidn2-0_2.3.2-2 libio-string-perl_1.08-3.1 libisl23_0.24-2 libitm1_11.2.0-13 libitm1-i386-cross_11.2.0-9cross1 libk5crypto3_1.18.3-7 libkeyutils1_1.6.1-2 libkrb5-3_1.18.3-7 libkrb5support0_1.18.3-7 liblocale-gettext-perl_1.07-4+b1 liblsan0_11.2.0-13 liblz4-1_1.9.3-2 liblzma5_5.2.5-2 libmagic-mgc_1:5.41-2 libmagic1_1:5.41-2 libmount1_2.37.2-5 libmpc3_1.2.1-1 libmpfr6_4.1.0-3 libnettle8_3.7.3-1 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libp11-kit0_0.24.0-6 libpam-modules_1.4.0-11 libpam-modules-bin_1.4.0-11 libpam-runtime_1.4.0-11 libpam0g_1.4.0-11 libpcre2-8-0_10.39-3 libpcre3_2:8.39-13 libperl5.32_5.32.1-6 libpipeline1_1.5.4-2 libquadmath0_11.2.0-13 libquadmath0-i386-cross_11.2.0-9cross1 libseccomp2_2.5.3-2 libselinux1_3.3-1+b1 libsemanage-common_3.3-1 libsemanage2_3.3-1+b1 libsepol2_3.3-1 libsigsegv2_2.13-1 libsmartcols1_2.37.2-5 libssl1.1_1.1.1m-1 libstdc++-11-dev_11.2.0-13 libstdc++-11-dev-i386-cross_11.2.0-9cross1 libstdc++6_11.2.0-13 libstdc++6-i386-cross_11.2.0-9cross1 libsub-override-perl_0.09-2 libsystemd0_249.7-1 libtasn1-6_4.18.0-4 libtinfo6_6.3-1 libtirpc-common_1.3.2-2 libtirpc-dev_1.3.2-2 libtirpc3_1.3.2-2 libtool_2.4.6-15 libtsan0_11.2.0-13 libubsan1_11.2.0-13 libubsan1-i386-cross_11.2.0-9cross1 libuchardet0_0.0.7-1 libudev1_249.7-1 libunistring2_0.9.10-6 libuuid1_2.37.2-5 libxml-libxml-perl_2.0134+dfsg-2+b1 libxml-namespacesupport-perl_1.12-1.1 libxml-sax-base-perl_1.09-1.1 libxml-sax-perl_1.02+dfsg-3 libxml-simple-perl_2.25-1 libxml2_2.9.12+dfsg-5+b1 libxxhash0_0.8.0-2 libyaml-perl_1.30-1 libzstd1_1.4.8+dfsg-3 linux-libc-dev_5.15.5-2 linux-libc-dev-i386-cross_5.15.5-1cross1 login_1:4.8.1-2 lsb-base_11.1.0 m4_1.4.18-5 make_4.3-4.1 man-db_2.9.4-4 mawk_1.3.4.20200120-2 mount_2.37.2-5 ncurses-base_6.3-1 ncurses-bin_6.3-1 passwd_1:4.8.1-2 patch_2.7.6-7 perl_5.32.1-6 perl-base_5.32.1-6 perl-modules-5.32_5.32.1-6 pkg-config_0.29.2-1 po-debconf_1.0.21+nmu1 rpcsvc-proto_1.4.2-4 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.8-1 sensible-utils_0.0.17 sysvinit-utils_3.01-1 tar_1.34+dfsg-1 tzdata_2021e-1 ucf_3.0043 util-linux_2.37.2-5 xz-utils_5.2.5-2 zlib1g_1:1.2.11.dfsg-2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: libmuscle Binary: libmuscle-dev, libmuscle1 Architecture: any Version: 3.7+4565-7 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: http://sourceforge.net/p/mauve/code/HEAD/tree/muscle/trunk/ Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/med-team/libmuscle Vcs-Git: https://salsa.debian.org/med-team/libmuscle.git Build-Depends: debhelper-compat (= 13), d-shlibs, pkg-config Package-List: libmuscle-dev deb libdevel optional arch=any libmuscle1 deb libs optional arch=any Checksums-Sha1: 79bba85d6f4908f4b6e7f42d9c5426958bfceca6 184444 libmuscle_3.7+4565.orig.tar.xz 2b20aade450412a1c21c85257ed990883f2e6f3a 12396 libmuscle_3.7+4565-7.debian.tar.xz Checksums-Sha256: 7919b2378c8e41badb0828a8fdf8b184e67aeeb5a9f91566935e8a72a9e3b376 184444 libmuscle_3.7+4565.orig.tar.xz 4fbf69f8c8dc7b4b2f58d0e96276d7c42b8b6e68c4ea83ea34d0c5b9c2868353 12396 libmuscle_3.7+4565-7.debian.tar.xz Files: cc28b356074dcf1ef98f9634f9bc1d74 184444 libmuscle_3.7+4565.orig.tar.xz 27fb6f704e86f5ef134520a7f00a8c5c 12396 libmuscle_3.7+4565-7.debian.tar.xz 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gpgv: Signature made Mon Nov 16 19:10:27 2020 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify signature ./libmuscle_3.7+4565-7.dsc dpkg-source: info: extracting libmuscle in /<> dpkg-source: info: unpacking libmuscle_3.7+4565.orig.tar.xz dpkg-source: info: unpacking libmuscle_3.7+4565-7.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying parsnp_changes.patch dpkg-source: info: applying drop_version_from_library_name.patch dpkg-source: info: applying makefile_deps.patch Check disk space ---------------- Sufficient free space for build +------------------------------------------------------------------------------+ | Starting Timed Build Commands | +------------------------------------------------------------------------------+ ulimit -c --------- 0 I: Finished running 'ulimit -c'. Finished processing commands. -------------------------------------------------------------------------------- User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.i386 DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_GB.UTF-8 LC_ALL=C.UTF-8 LOGNAME=helmutg PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=crossqa-sid SCHROOT_CHROOT_NAME=crossqa-sid SCHROOT_COMMAND=env SCHROOT_GID=1002 SCHROOT_GROUP=helmutg SCHROOT_SESSION_ID=crossqa-sid-9406fdd5-a0ac-4fb7-aab2-34f0112c201f SCHROOT_UID=1002 SCHROOT_USER=helmutg SHELL=/bin/sh USER=helmutg dpkg-buildpackage ----------------- Command: dpkg-buildpackage -ai386 -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package libmuscle dpkg-buildpackage: info: source version 3.7+4565-7 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-architecture: warning: specified GNU system type i686-linux-gnu does not match CC system type aarch64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 debian/rules clean dh clean dh_clean debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a libtoolize: putting auxiliary files in AC_CONFIG_AUX_DIR, 'config'. libtoolize: copying file 'config/ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'. libtoolize: copying file 'm4/libtool.m4' libtoolize: copying file 'm4/ltoptions.m4' libtoolize: copying file 'm4/ltsugar.m4' libtoolize: copying file 'm4/ltversion.m4' libtoolize: copying file 'm4/lt~obsolete.m4' configure.ac:52: warning: AM_INIT_AUTOMAKE: two- and three-arguments forms are deprecated. ./lib/autoconf/general.m4:2434: AC_DIAGNOSE is expanded from... aclocal.m4:429: AM_INIT_AUTOMAKE is expanded from... configure.ac:52: the top level configure.ac:64: warning: The macro `AM_PROG_LIBTOOL' is obsolete. configure.ac:64: You should run autoupdate. m4/libtool.m4:100: AM_PROG_LIBTOOL is expanded from... configure.ac:64: the top level configure.ac:70: warning: The macro `AC_HEADER_STDC' is obsolete. configure.ac:70: You should run autoupdate. ./lib/autoconf/headers.m4:704: AC_HEADER_STDC is expanded from... configure.ac:70: the top level configure.ac:103: warning: The macro `AC_HEADER_TIME' is obsolete. configure.ac:103: You should run autoupdate. ./lib/autoconf/headers.m4:743: AC_HEADER_TIME is expanded from... configure.ac:103: the top level configure.ac:111: warning: AC_OUTPUT should be used without arguments. configure.ac:111: You should run autoupdate. configure.ac:52: warning: AM_INIT_AUTOMAKE: two- and three-arguments forms are deprecated. For more info, see: configure.ac:52: https://www.gnu.org/software/automake/manual/automake.html#Modernize-AM_005fINIT_005fAUTOMAKE-invocation configure.ac:64: installing 'config/compile' configure.ac:64: installing 'config/config.guess' configure.ac:64: installing 'config/config.sub' configure.ac:52: installing 'config/install-sh' configure.ac:52: installing 'config/missing' Makefile.am: installing './INSTALL' libMUSCLE/Makefile.am:28: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') libMUSCLE/Makefile.am: installing 'config/depcomp' dh_auto_configure -a ./configure --build=aarch64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/i386-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --host=i686-linux-gnu configure: loading site script /etc/dpkg-cross/cross-config.i386 checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for i686-linux-gnu-strip... i686-linux-gnu-strip checking for a race-free mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for i686-linux-gnu-g++... i686-linux-gnu-g++ checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... yes checking for suffix of object files... o checking whether the compiler supports GNU C++... yes checking whether i686-linux-gnu-g++ accepts -g... yes checking for i686-linux-gnu-g++ option to enable C++11 features... none needed checking whether make supports the include directive... yes (GNU style) checking dependency style of i686-linux-gnu-g++... none checking whether ln -s works... yes checking build system type... aarch64-unknown-linux-gnu checking host system type... i686-pc-linux-gnu checking how to print strings... printf checking for i686-linux-gnu-gcc... i686-linux-gnu-gcc checking whether the compiler supports GNU C... yes checking whether i686-linux-gnu-gcc accepts -g... yes checking for i686-linux-gnu-gcc option to enable C11 features... none needed checking whether i686-linux-gnu-gcc understands -c and -o together... yes checking dependency style of i686-linux-gnu-gcc... none checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by i686-linux-gnu-gcc... /usr/i686-linux-gnu/bin/ld checking if the linker (/usr/i686-linux-gnu/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/i686-linux-gnu-nm -B checking the name lister (/usr/bin/i686-linux-gnu-nm -B) interface... BSD nm checking the maximum length of command line arguments... 1572864 checking how to convert aarch64-unknown-linux-gnu file names to i686-pc-linux-gnu format... func_convert_file_noop checking how to convert aarch64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/i686-linux-gnu/bin/ld option to reload object files... -r checking for i686-linux-gnu-objdump... i686-linux-gnu-objdump checking how to recognize dependent libraries... pass_all checking for i686-linux-gnu-dlltool... no checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for i686-linux-gnu-ar... i686-linux-gnu-ar checking for archiver @FILE support... @ checking for i686-linux-gnu-strip... (cached) i686-linux-gnu-strip checking for i686-linux-gnu-ranlib... i686-linux-gnu-ranlib checking command to parse /usr/bin/i686-linux-gnu-nm -B output from i686-linux-gnu-gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for i686-linux-gnu-mt... no checking for mt... no checking if : is a manifest tool... no checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for sys/time.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if i686-linux-gnu-gcc supports -fno-rtti -fno-exceptions... no checking for i686-linux-gnu-gcc option to produce PIC... -fPIC -DPIC checking if i686-linux-gnu-gcc PIC flag -fPIC -DPIC works... yes checking if i686-linux-gnu-gcc static flag -static works... yes checking if i686-linux-gnu-gcc supports -c -o file.o... yes checking if i686-linux-gnu-gcc supports -c -o file.o... (cached) yes checking whether the i686-linux-gnu-gcc linker (/usr/i686-linux-gnu/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking how to run the C++ preprocessor... i686-linux-gnu-g++ -E checking for ld used by i686-linux-gnu-g++... /usr/i686-linux-gnu/bin/ld checking if the linker (/usr/i686-linux-gnu/bin/ld) is GNU ld... yes checking whether the i686-linux-gnu-g++ linker (/usr/i686-linux-gnu/bin/ld) supports shared libraries... yes checking for i686-linux-gnu-g++ option to produce PIC... -fPIC -DPIC checking if i686-linux-gnu-g++ PIC flag -fPIC -DPIC works... yes checking if i686-linux-gnu-g++ static flag -static works... yes checking if i686-linux-gnu-g++ supports -c -o file.o... yes checking if i686-linux-gnu-g++ supports -c -o file.o... (cached) yes checking whether the i686-linux-gnu-g++ linker (/usr/i686-linux-gnu/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for egrep... (cached) /bin/grep -E checking for i686-linux-gnu-doxygen... no checking for doxygen... no configure: WARNING: doxygen not found - will not generate any doxygen documentation checking for i686-linux-gnu-perl... no checking for perl... /usr/bin/perl configure: WARNING: using cross tools not prefixed with host triplet checking for an ANSI C-conforming const... yes checking for inline... inline checking how to run the C preprocessor... i686-linux-gnu-gcc -E checking whether i686-linux-gnu-gcc needs -traditional... no checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating libMUSCLE/Makefile config.status: creating libMUSCLE.pc config.status: executing depfiles commands config.status: executing libtool commands dh_auto_build -a make -j1 make[1]: Entering directory '/<>' Making all in libMUSCLE make[2]: Entering directory '/<>/libMUSCLE' i686-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o main.o main.cpp /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 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-fstack-protector-strong -Wformat -Werror=format-security -c aligngivenpath.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-aligngivenpath.o libtool: compile: i686-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c aligngivenpath.cpp -o libMUSCLE_la-aligngivenpath.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-aligngivenpathsw.lo `test -f 'aligngivenpathsw.cpp' || echo './'`aligngivenpathsw.cpp libtool: compile: i686-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c aligngivenpathsw.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-aligngivenpathsw.o libtool: compile: i686-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c aligngivenpathsw.cpp -o libMUSCLE_la-aligngivenpathsw.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-aligntwomsas.lo `test -f 'aligntwomsas.cpp' || echo './'`aligntwomsas.cpp libtool: compile: i686-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c aligntwomsas.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-aligntwomsas.o libtool: compile: i686-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 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-fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-aligntwoprofs.lo `test -f 'aligntwoprofs.cpp' || echo './'`aligntwoprofs.cpp libtool: compile: i686-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c aligntwoprofs.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-aligntwoprofs.o libtool: compile: i686-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c aligntwoprofs.cpp -o libMUSCLE_la-aligntwoprofs.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 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i686-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-anchoredpp.lo `test -f 'anchoredpp.cpp' || echo './'`anchoredpp.cpp libtool: compile: i686-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 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-g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c anchoredpp.cpp -o libMUSCLE_la-anchoredpp.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-anchors.lo `test -f 'anchors.cpp' || echo './'`anchors.cpp libtool: compile: i686-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c anchors.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-anchors.o libtool: compile: i686-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 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-Wformat -Werror=format-security -c -o libMUSCLE_la-bittraceback.lo `test -f 'bittraceback.cpp' || echo './'`bittraceback.cpp libtool: compile: i686-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c bittraceback.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-bittraceback.o bittraceback.cpp: In function ‘const char* muscle::BitsToStr(char)’: bittraceback.cpp:20:36: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 20 | static TLSstr Str("xM xD xI"); | ^~~~~~~~~~ libtool: compile: i686-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c bittraceback.cpp -o libMUSCLE_la-bittraceback.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-blosumla.lo `test -f 'blosumla.cpp' || echo './'`blosumla.cpp libtool: compile: i686-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c blosumla.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-blosumla.o libtool: compile: i686-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c blosumla.cpp -o libMUSCLE_la-blosumla.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-clust.lo `test -f 'clust.cpp' || echo './'`clust.cpp libtool: compile: i686-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 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-DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c cluster.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-cluster.o libtool: compile: i686-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 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-ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-clwwt.lo `test -f 'clwwt.cpp' || echo './'`clwwt.cpp libtool: compile: i686-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c clwwt.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-clwwt.o libtool: compile: i686-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c clwwt.cpp -o libMUSCLE_la-clwwt.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 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libMUSCLE_la-fastscorepath2.lo `test -f 'fastscorepath2.cpp' || echo './'`fastscorepath2.cpp libtool: compile: i686-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c fastscorepath2.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-fastscorepath2.o libtool: compile: i686-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" 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-DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c globalslinux.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-globalslinux.o libtool: compile: i686-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 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-DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-globalswin32.lo `test -f 'globalswin32.cpp' || echo './'`globalswin32.cpp libtool: compile: i686-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c globalswin32.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-globalswin32.o libtool: compile: i686-linux-gnu-g++ -DPACKAGE_NAME=\"\" 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i686-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c html.cpp -o libMUSCLE_la-html.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 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-DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c onexception.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-onexception.o libtool: compile: i686-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c onexception.cpp -o libMUSCLE_la-onexception.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-options.lo `test -f 'options.cpp' || echo './'`options.cpp libtool: compile: i686-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c options.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-options.o options.cpp:19:2: warning: #warning "Command-line option value storage is not OpenMP safe yet" [-Wcpp] 19 | #warning "Command-line option value storage is not OpenMP safe yet" | ^~~~~~~ libtool: compile: i686-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c options.cpp -o libMUSCLE_la-options.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 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-fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c outweights.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-outweights.o libtool: compile: i686-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c outweights.cpp -o libMUSCLE_la-outweights.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-pam200mafft.lo `test -f 'pam200mafft.cpp' || echo './'`pam200mafft.cpp libtool: compile: i686-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 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-DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c params.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-params.o libtool: compile: i686-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 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-Wformat -Werror=format-security -c -o libMUSCLE_la-phy2.lo `test -f 'phy2.cpp' || echo './'`phy2.cpp libtool: compile: i686-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c phy2.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-phy2.o libtool: compile: i686-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DHAVE_STDIO_H=1 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'./'`profdb.cpp libtool: compile: i686-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c profdb.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-profdb.o libtool: compile: i686-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 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-Wformat -Werror=format-security -c progalign.cpp -o libMUSCLE_la-progalign.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-progress.lo `test -f 'progress.cpp' || echo './'`progress.cpp libtool: compile: i686-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c progress.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-progress.o progress.cpp:11:2: warning: #warning "progress indicators have not been made parallel-safe yet" [-Wcpp] 11 | #warning "progress indicators have not been made parallel-safe yet" | ^~~~~~~ libtool: compile: i686-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 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.libs/libMUSCLE_la-progressivealign.o libtool: compile: i686-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c progressivealign.cpp -o libMUSCLE_la-progressivealign.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 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-DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c realigndiffs.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-realigndiffs.o libtool: compile: i686-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 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i686-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c refinetreee.cpp -o libMUSCLE_la-refinetreee.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 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-Wformat -Werror=format-security -c -o libMUSCLE_la-scoregaps.lo `test -f 'scoregaps.cpp' || echo './'`scoregaps.cpp libtool: compile: i686-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c scoregaps.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-scoregaps.o libtool: compile: i686-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" 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scorehistory.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-scorehistory.o libtool: compile: i686-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c scorehistory.cpp -o libMUSCLE_la-scorehistory.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DHAVE_STDIO_H=1 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-DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c seqvect.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-seqvect.o libtool: compile: i686-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 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-DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-setgscweights.lo `test -f 'setgscweights.cpp' || echo './'`setgscweights.cpp libtool: compile: i686-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c setgscweights.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-setgscweights.o libtool: compile: i686-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c setgscweights.cpp -o libMUSCLE_la-setgscweights.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-setnewhandler.lo `test -f 'setnewhandler.cpp' || echo './'`setnewhandler.cpp libtool: compile: i686-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c setnewhandler.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-setnewhandler.o libtool: compile: i686-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c setnewhandler.cpp -o libMUSCLE_la-setnewhandler.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-spfast.lo `test -f 'spfast.cpp' || echo './'`spfast.cpp libtool: compile: i686-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c spfast.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-spfast.o spfast.cpp: In function ‘char* muscle::GapTypeToStr(int)’: spfast.cpp:20:25: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 20 | case LL: return "LL"; | ^~~~ spfast.cpp:21:25: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 21 | case LG: return "LG"; | ^~~~ spfast.cpp:22:25: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 22 | case GL: return "GL"; | ^~~~ spfast.cpp:23:25: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 23 | case GG: return "GG"; | ^~~~ spfast.cpp:26:16: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 26 | return "?"; | ^~~ libtool: compile: i686-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c spfast.cpp -o libMUSCLE_la-spfast.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-sptest.lo `test -f 'sptest.cpp' || echo './'`sptest.cpp libtool: compile: i686-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c sptest.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-sptest.o libtool: compile: i686-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c sptest.cpp -o libMUSCLE_la-sptest.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-stabilize.lo `test -f 'stabilize.cpp' || echo './'`stabilize.cpp libtool: compile: i686-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c stabilize.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-stabilize.o libtool: compile: i686-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c stabilize.cpp -o libMUSCLE_la-stabilize.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-subfam.lo `test -f 'subfam.cpp' || echo './'`subfam.cpp libtool: compile: i686-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c subfam.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-subfam.o subfam.cpp: In function ‘void muscle::AlignSubFam(muscle::SeqVect&, const muscle::Tree&, unsigned int, muscle::MSA&)’: subfam.cpp:175:15: warning: ignoring return value of ‘int system(const char*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 175 | system(CmdLine); | ~~~~~~^~~~~~~~~ libtool: compile: i686-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c subfam.cpp -o libMUSCLE_la-subfam.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-subfams.lo `test -f 'subfams.cpp' || echo './'`subfams.cpp libtool: compile: i686-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c subfams.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-subfams.o libtool: compile: i686-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c subfams.cpp -o libMUSCLE_la-subfams.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-sw.lo `test -f 'sw.cpp' || echo './'`sw.cpp libtool: compile: i686-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" 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'tracebacksw.cpp' || echo './'`tracebacksw.cpp libtool: compile: i686-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c tracebacksw.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-tracebacksw.o libtool: compile: i686-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 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-D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-treefrommsa.lo `test -f 'treefrommsa.cpp' || echo './'`treefrommsa.cpp libtool: compile: i686-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c treefrommsa.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-treefrommsa.o libtool: compile: i686-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c treefrommsa.cpp -o libMUSCLE_la-treefrommsa.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-typetostr.lo `test -f 'typetostr.cpp' || echo './'`typetostr.cpp libtool: compile: i686-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c typetostr.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-typetostr.o typetostr.cpp: In function ‘const char* muscle::SecsToStr(long unsigned int)’: typetostr.cpp:15:32: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘long int’ [-Wformat=] 15 | sprintf(Str.get(), "%02d:%02d:%02d", hh, mm, ss); | ~~~^ ~~ | | | | int long int | %02ld typetostr.cpp:15:37: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long int’ [-Wformat=] 15 | sprintf(Str.get(), "%02d:%02d:%02d", hh, mm, ss); | ~~~^ ~~ | | | | int long int | %02ld typetostr.cpp:15:42: warning: format ‘%d’ expects argument of type ‘int’, but argument 5 has type ‘long int’ [-Wformat=] 15 | sprintf(Str.get(), "%02d:%02d:%02d", hh, mm, ss); | ~~~^ ~~ | | | | int long int | %02ld libtool: compile: i686-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c typetostr.cpp -o libMUSCLE_la-typetostr.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-upgma2.lo `test -f 'upgma2.cpp' || echo './'`upgma2.cpp libtool: compile: i686-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c upgma2.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-upgma2.o libtool: compile: i686-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c upgma2.cpp -o libMUSCLE_la-upgma2.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-usage.lo `test -f 'usage.cpp' || echo './'`usage.cpp libtool: compile: i686-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c usage.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-usage.o libtool: compile: i686-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c usage.cpp -o libMUSCLE_la-usage.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-validateids.lo `test -f 'validateids.cpp' || echo './'`validateids.cpp libtool: compile: i686-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c validateids.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-validateids.o libtool: compile: i686-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c validateids.cpp -o libMUSCLE_la-validateids.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-vtml2.lo `test -f 'vtml2.cpp' || echo './'`vtml2.cpp libtool: compile: i686-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c vtml2.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-vtml2.o libtool: compile: i686-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 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libMUSCLE_la-muscle.lo libMUSCLE_la-muscleout.lo libMUSCLE_la-nucmx.lo libMUSCLE_la-nwdasimple2.lo libMUSCLE_la-nwdasimple.lo libMUSCLE_la-nwdasmall.lo libMUSCLE_la-nwrec.lo libMUSCLE_la-nwsmall.lo libMUSCLE_la-objscore2.lo libMUSCLE_la-objscore.lo libMUSCLE_la-objscoreda.lo libMUSCLE_la-onexception.lo libMUSCLE_la-options.lo libMUSCLE_la-outweights.lo libMUSCLE_la-pam200mafft.lo libMUSCLE_la-params.lo libMUSCLE_la-phy2.lo libMUSCLE_la-phy3.lo libMUSCLE_la-phy4.lo libMUSCLE_la-phy.lo libMUSCLE_la-phyfromclust.lo libMUSCLE_la-phyfromfile.lo libMUSCLE_la-physeq.lo libMUSCLE_la-phytofile.lo libMUSCLE_la-posgap.lo libMUSCLE_la-ppscore.lo libMUSCLE_la-profdb.lo libMUSCLE_la-profile.lo libMUSCLE_la-profilefrommsa.lo libMUSCLE_la-progalign.lo libMUSCLE_la-progress.lo libMUSCLE_la-progressivealign.lo libMUSCLE_la-pwpath.lo libMUSCLE_la-readmx.lo libMUSCLE_la-realigndiffs.lo libMUSCLE_la-realigndiffse.lo libMUSCLE_la-refine.lo libMUSCLE_la-refinehoriz.lo libMUSCLE_la-refinesubfams.lo libMUSCLE_la-refinetree.lo libMUSCLE_la-refinetreee.lo libMUSCLE_la-refinevert.lo libMUSCLE_la-refinew.lo libMUSCLE_la-savebest.lo libMUSCLE_la-scoregaps.lo libMUSCLE_la-scorehistory.lo libMUSCLE_la-scorepp.lo libMUSCLE_la-seq.lo libMUSCLE_la-seqvect.lo libMUSCLE_la-setblosumweights.lo libMUSCLE_la-setgscweights.lo libMUSCLE_la-setnewhandler.lo libMUSCLE_la-spfast.lo libMUSCLE_la-sptest.lo libMUSCLE_la-stabilize.lo libMUSCLE_la-subfam.lo libMUSCLE_la-subfams.lo libMUSCLE_la-sw.lo libMUSCLE_la-termgaps.lo libMUSCLE_la-textfile.lo libMUSCLE_la-threewaywt.lo libMUSCLE_la-traceback.lo libMUSCLE_la-tracebackopt.lo libMUSCLE_la-tracebacksw.lo libMUSCLE_la-treefrommsa.lo libMUSCLE_la-typetostr.lo libMUSCLE_la-upgma2.lo libMUSCLE_la-usage.lo libMUSCLE_la-validateids.lo libMUSCLE_la-vtml2.lo libMUSCLE_la-writescorefile.lo libMUSCLE_la-blosum62.lo libMUSCLE_la-globalsother.lo libMUSCLE_la-maketree.lo libMUSCLE_la-scoredist.lo libMUSCLE_la-tomhydro.lo libtool: link: i686-linux-gnu-g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc-cross/i686-linux-gnu/11/../../../../i686-linux-gnu/lib/../lib/crti.o /usr/lib/gcc-cross/i686-linux-gnu/11/crtbeginS.o .libs/libMUSCLE_la-aligngivenpath.o .libs/libMUSCLE_la-aligngivenpathsw.o .libs/libMUSCLE_la-aligntwomsas.o .libs/libMUSCLE_la-aligntwoprofs.o .libs/libMUSCLE_la-aln.o .libs/libMUSCLE_la-alpha.o .libs/libMUSCLE_la-anchoredpp.o .libs/libMUSCLE_la-anchors.o .libs/libMUSCLE_la-bittraceback.o .libs/libMUSCLE_la-blosumla.o .libs/libMUSCLE_la-clust.o .libs/libMUSCLE_la-cluster.o .libs/libMUSCLE_la-clwwt.o .libs/libMUSCLE_la-color.o .libs/libMUSCLE_la-cons.o .libs/libMUSCLE_la-diaglist.o .libs/libMUSCLE_la-diffobjscore.o .libs/libMUSCLE_la-diffpaths.o .libs/libMUSCLE_la-difftrees.o .libs/libMUSCLE_la-difftreese.o .libs/libMUSCLE_la-distcalc.o .libs/libMUSCLE_la-distfunc.o .libs/libMUSCLE_la-distpwkimura.o .libs/libMUSCLE_la-domuscle.o .libs/libMUSCLE_la-dosp.o .libs/libMUSCLE_la-dpreglist.o .libs/libMUSCLE_la-drawtree.o .libs/libMUSCLE_la-edgelist.o .libs/libMUSCLE_la-enumopts.o .libs/libMUSCLE_la-enumtostr.o .libs/libMUSCLE_la-estring.o .libs/libMUSCLE_la-fasta2.o .libs/libMUSCLE_la-fasta.o .libs/libMUSCLE_la-fastclust.o .libs/libMUSCLE_la-fastdist.o .libs/libMUSCLE_la-fastdistjones.o .libs/libMUSCLE_la-fastdistkbit.o .libs/libMUSCLE_la-fastdistkmer.o .libs/libMUSCLE_la-fastdistmafft.o .libs/libMUSCLE_la-fastdistnuc.o .libs/libMUSCLE_la-fastscorepath2.o .libs/libMUSCLE_la-finddiags.o .libs/libMUSCLE_la-finddiagsn.o .libs/libMUSCLE_la-glbalign352.o .libs/libMUSCLE_la-glbalign.o .libs/libMUSCLE_la-glbaligndiag.o .libs/libMUSCLE_la-glbalignle.o .libs/libMUSCLE_la-glbalignsimple.o .libs/libMUSCLE_la-glbalignsp.o .libs/libMUSCLE_la-glbalignspn.o .libs/libMUSCLE_la-glbalignss.o .libs/libMUSCLE_la-glbalndimer.o .libs/libMUSCLE_la-globals.o .libs/libMUSCLE_la-globalslinux.o .libs/libMUSCLE_la-globalswin32.o .libs/libMUSCLE_la-gonnet.o .libs/libMUSCLE_la-gotowt.o .libs/libMUSCLE_la-henikoffweight.o .libs/libMUSCLE_la-henikoffweightpb.o .libs/libMUSCLE_la-html.o .libs/libMUSCLE_la-hydro.o .libs/libMUSCLE_la-intmath.o .libs/libMUSCLE_la-local.o .libs/libMUSCLE_la-makerootmsab.o .libs/libMUSCLE_la-makerootmsa.o .libs/libMUSCLE_la-mhack.o .libs/libMUSCLE_la-mpam200.o .libs/libMUSCLE_la-msa2.o .libs/libMUSCLE_la-msa.o .libs/libMUSCLE_la-msadistkimura.o .libs/libMUSCLE_la-msf.o .libs/libMUSCLE_la-muscle.o .libs/libMUSCLE_la-muscleout.o .libs/libMUSCLE_la-nucmx.o .libs/libMUSCLE_la-nwdasimple2.o .libs/libMUSCLE_la-nwdasimple.o .libs/libMUSCLE_la-nwdasmall.o .libs/libMUSCLE_la-nwrec.o .libs/libMUSCLE_la-nwsmall.o .libs/libMUSCLE_la-objscore2.o .libs/libMUSCLE_la-objscore.o .libs/libMUSCLE_la-objscoreda.o .libs/libMUSCLE_la-onexception.o .libs/libMUSCLE_la-options.o .libs/libMUSCLE_la-outweights.o .libs/libMUSCLE_la-pam200mafft.o .libs/libMUSCLE_la-params.o .libs/libMUSCLE_la-phy2.o .libs/libMUSCLE_la-phy3.o .libs/libMUSCLE_la-phy4.o .libs/libMUSCLE_la-phy.o .libs/libMUSCLE_la-phyfromclust.o .libs/libMUSCLE_la-phyfromfile.o .libs/libMUSCLE_la-physeq.o .libs/libMUSCLE_la-phytofile.o .libs/libMUSCLE_la-posgap.o .libs/libMUSCLE_la-ppscore.o .libs/libMUSCLE_la-profdb.o .libs/libMUSCLE_la-profile.o .libs/libMUSCLE_la-profilefrommsa.o .libs/libMUSCLE_la-progalign.o .libs/libMUSCLE_la-progress.o .libs/libMUSCLE_la-progressivealign.o .libs/libMUSCLE_la-pwpath.o .libs/libMUSCLE_la-readmx.o .libs/libMUSCLE_la-realigndiffs.o .libs/libMUSCLE_la-realigndiffse.o .libs/libMUSCLE_la-refine.o .libs/libMUSCLE_la-refinehoriz.o .libs/libMUSCLE_la-refinesubfams.o .libs/libMUSCLE_la-refinetree.o .libs/libMUSCLE_la-refinetreee.o .libs/libMUSCLE_la-refinevert.o .libs/libMUSCLE_la-refinew.o .libs/libMUSCLE_la-savebest.o .libs/libMUSCLE_la-scoregaps.o .libs/libMUSCLE_la-scorehistory.o .libs/libMUSCLE_la-scorepp.o .libs/libMUSCLE_la-seq.o .libs/libMUSCLE_la-seqvect.o .libs/libMUSCLE_la-setblosumweights.o .libs/libMUSCLE_la-setgscweights.o .libs/libMUSCLE_la-setnewhandler.o .libs/libMUSCLE_la-spfast.o .libs/libMUSCLE_la-sptest.o .libs/libMUSCLE_la-stabilize.o .libs/libMUSCLE_la-subfam.o .libs/libMUSCLE_la-subfams.o .libs/libMUSCLE_la-sw.o .libs/libMUSCLE_la-termgaps.o .libs/libMUSCLE_la-textfile.o .libs/libMUSCLE_la-threewaywt.o .libs/libMUSCLE_la-traceback.o .libs/libMUSCLE_la-tracebackopt.o .libs/libMUSCLE_la-tracebacksw.o .libs/libMUSCLE_la-treefrommsa.o .libs/libMUSCLE_la-typetostr.o .libs/libMUSCLE_la-upgma2.o .libs/libMUSCLE_la-usage.o .libs/libMUSCLE_la-validateids.o .libs/libMUSCLE_la-vtml2.o .libs/libMUSCLE_la-writescorefile.o .libs/libMUSCLE_la-blosum62.o .libs/libMUSCLE_la-globalsother.o .libs/libMUSCLE_la-maketree.o .libs/libMUSCLE_la-scoredist.o .libs/libMUSCLE_la-tomhydro.o -L/usr/lib/gcc-cross/i686-linux-gnu/11 -L/usr/lib/gcc-cross/i686-linux-gnu/11/../../../../i686-linux-gnu/lib/../lib -L/lib/i386-linux-gnu -L/lib/../lib -L/usr/lib/i386-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc-cross/i686-linux-gnu/11/../../../../i686-linux-gnu/lib -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc-cross/i686-linux-gnu/11/crtendS.o /usr/lib/gcc-cross/i686-linux-gnu/11/../../../../i686-linux-gnu/lib/../lib/crtn.o -O2 -fopenmp -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -fopenmp -Wl,-soname -Wl,libMUSCLE.so.1 -o .libs/libMUSCLE.so.1.0.0 libtool: link: (cd ".libs" && rm -f "libMUSCLE.so.1" && ln -s "libMUSCLE.so.1.0.0" "libMUSCLE.so.1") libtool: link: (cd ".libs" && rm -f "libMUSCLE.so" && ln -s "libMUSCLE.so.1.0.0" "libMUSCLE.so") libtool: link: i686-linux-gnu-ar cr .libs/libMUSCLE.a libMUSCLE_la-aligngivenpath.o libMUSCLE_la-aligngivenpathsw.o libMUSCLE_la-aligntwomsas.o libMUSCLE_la-aligntwoprofs.o libMUSCLE_la-aln.o libMUSCLE_la-alpha.o libMUSCLE_la-anchoredpp.o libMUSCLE_la-anchors.o libMUSCLE_la-bittraceback.o libMUSCLE_la-blosumla.o libMUSCLE_la-clust.o libMUSCLE_la-cluster.o libMUSCLE_la-clwwt.o libMUSCLE_la-color.o libMUSCLE_la-cons.o libMUSCLE_la-diaglist.o libMUSCLE_la-diffobjscore.o libMUSCLE_la-diffpaths.o libMUSCLE_la-difftrees.o libMUSCLE_la-difftreese.o libMUSCLE_la-distcalc.o libMUSCLE_la-distfunc.o libMUSCLE_la-distpwkimura.o libMUSCLE_la-domuscle.o libMUSCLE_la-dosp.o libMUSCLE_la-dpreglist.o libMUSCLE_la-drawtree.o libMUSCLE_la-edgelist.o libMUSCLE_la-enumopts.o libMUSCLE_la-enumtostr.o libMUSCLE_la-estring.o libMUSCLE_la-fasta2.o libMUSCLE_la-fasta.o libMUSCLE_la-fastclust.o libMUSCLE_la-fastdist.o libMUSCLE_la-fastdistjones.o libMUSCLE_la-fastdistkbit.o libMUSCLE_la-fastdistkmer.o libMUSCLE_la-fastdistmafft.o libMUSCLE_la-fastdistnuc.o libMUSCLE_la-fastscorepath2.o libMUSCLE_la-finddiags.o libMUSCLE_la-finddiagsn.o libMUSCLE_la-glbalign352.o libMUSCLE_la-glbalign.o libMUSCLE_la-glbaligndiag.o libMUSCLE_la-glbalignle.o libMUSCLE_la-glbalignsimple.o libMUSCLE_la-glbalignsp.o libMUSCLE_la-glbalignspn.o libMUSCLE_la-glbalignss.o libMUSCLE_la-glbalndimer.o libMUSCLE_la-globals.o libMUSCLE_la-globalslinux.o libMUSCLE_la-globalswin32.o libMUSCLE_la-gonnet.o libMUSCLE_la-gotowt.o libMUSCLE_la-henikoffweight.o libMUSCLE_la-henikoffweightpb.o libMUSCLE_la-html.o libMUSCLE_la-hydro.o libMUSCLE_la-intmath.o libMUSCLE_la-local.o libMUSCLE_la-makerootmsab.o libMUSCLE_la-makerootmsa.o libMUSCLE_la-mhack.o libMUSCLE_la-mpam200.o libMUSCLE_la-msa2.o libMUSCLE_la-msa.o libMUSCLE_la-msadistkimura.o libMUSCLE_la-msf.o libMUSCLE_la-muscle.o libMUSCLE_la-muscleout.o libMUSCLE_la-nucmx.o libMUSCLE_la-nwdasimple2.o libMUSCLE_la-nwdasimple.o libMUSCLE_la-nwdasmall.o libMUSCLE_la-nwrec.o libMUSCLE_la-nwsmall.o libMUSCLE_la-objscore2.o libMUSCLE_la-objscore.o libMUSCLE_la-objscoreda.o libMUSCLE_la-onexception.o libMUSCLE_la-options.o libMUSCLE_la-outweights.o libMUSCLE_la-pam200mafft.o libMUSCLE_la-params.o libMUSCLE_la-phy2.o libMUSCLE_la-phy3.o libMUSCLE_la-phy4.o libMUSCLE_la-phy.o libMUSCLE_la-phyfromclust.o libMUSCLE_la-phyfromfile.o libMUSCLE_la-physeq.o libMUSCLE_la-phytofile.o libMUSCLE_la-posgap.o libMUSCLE_la-ppscore.o libMUSCLE_la-profdb.o libMUSCLE_la-profile.o libMUSCLE_la-profilefrommsa.o libMUSCLE_la-progalign.o libMUSCLE_la-progress.o libMUSCLE_la-progressivealign.o libMUSCLE_la-pwpath.o libMUSCLE_la-readmx.o libMUSCLE_la-realigndiffs.o libMUSCLE_la-realigndiffse.o libMUSCLE_la-refine.o libMUSCLE_la-refinehoriz.o libMUSCLE_la-refinesubfams.o libMUSCLE_la-refinetree.o libMUSCLE_la-refinetreee.o libMUSCLE_la-refinevert.o libMUSCLE_la-refinew.o libMUSCLE_la-savebest.o libMUSCLE_la-scoregaps.o libMUSCLE_la-scorehistory.o libMUSCLE_la-scorepp.o libMUSCLE_la-seq.o libMUSCLE_la-seqvect.o libMUSCLE_la-setblosumweights.o libMUSCLE_la-setgscweights.o libMUSCLE_la-setnewhandler.o libMUSCLE_la-spfast.o libMUSCLE_la-sptest.o libMUSCLE_la-stabilize.o libMUSCLE_la-subfam.o libMUSCLE_la-subfams.o libMUSCLE_la-sw.o libMUSCLE_la-termgaps.o libMUSCLE_la-textfile.o libMUSCLE_la-threewaywt.o libMUSCLE_la-traceback.o libMUSCLE_la-tracebackopt.o libMUSCLE_la-tracebacksw.o libMUSCLE_la-treefrommsa.o libMUSCLE_la-typetostr.o libMUSCLE_la-upgma2.o libMUSCLE_la-usage.o libMUSCLE_la-validateids.o libMUSCLE_la-vtml2.o libMUSCLE_la-writescorefile.o libMUSCLE_la-blosum62.o libMUSCLE_la-globalsother.o libMUSCLE_la-maketree.o libMUSCLE_la-scoredist.o libMUSCLE_la-tomhydro.o libtool: link: i686-linux-gnu-ranlib .libs/libMUSCLE.a libtool: link: ( cd ".libs" && rm -f "libMUSCLE.la" && ln -s "../libMUSCLE.la" "libMUSCLE.la" ) /bin/bash ../libtool --tag=CXX --mode=link i686-linux-gnu-g++ -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -Wl,-z,relro -Wl,-z,now -o muscle main.o libMUSCLE.la libtool: link: i686-linux-gnu-g++ -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/muscle main.o ./.libs/libMUSCLE.so -fopenmp -Wl,-rpath -Wl,/usr/lib/i386-linux-gnu make[2]: Leaving directory '/<>/libMUSCLE' make[2]: Entering directory '/<>' make[2]: Nothing to be done for 'all-am'. make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' dh: command-omitted: The call to "dh_auto_test -a" was omitted due to "DEB_BUILD_OPTIONS=nocheck" create-stamp debian/debhelper-build-stamp dh_prep -a dh_auto_install -a make -j1 install DESTDIR=/<>/libmuscle-3.7\+4565/debian/tmp AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/<>' Making install in libMUSCLE make[2]: Entering directory '/<>/libMUSCLE' make[3]: Entering directory '/<>/libMUSCLE' /bin/mkdir -p '/<>/debian/tmp/usr/lib/i386-linux-gnu' /bin/bash ../libtool --mode=install /usr/bin/install -c libMUSCLE.la '/<>/debian/tmp/usr/lib/i386-linux-gnu' libtool: install: /usr/bin/install -c .libs/libMUSCLE.so.1.0.0 /<>/debian/tmp/usr/lib/i386-linux-gnu/libMUSCLE.so.1.0.0 libtool: install: (cd /<>/debian/tmp/usr/lib/i386-linux-gnu && { ln -s -f libMUSCLE.so.1.0.0 libMUSCLE.so.1 || { rm -f libMUSCLE.so.1 && ln -s libMUSCLE.so.1.0.0 libMUSCLE.so.1; }; }) libtool: install: (cd /<>/debian/tmp/usr/lib/i386-linux-gnu && { ln -s -f libMUSCLE.so.1.0.0 libMUSCLE.so || { rm -f libMUSCLE.so && ln -s libMUSCLE.so.1.0.0 libMUSCLE.so; }; }) libtool: install: /usr/bin/install -c .libs/libMUSCLE.lai /<>/debian/tmp/usr/lib/i386-linux-gnu/libMUSCLE.la libtool: install: /usr/bin/install -c .libs/libMUSCLE.a /<>/debian/tmp/usr/lib/i386-linux-gnu/libMUSCLE.a libtool: install: chmod 644 /<>/debian/tmp/usr/lib/i386-linux-gnu/libMUSCLE.a libtool: install: i686-linux-gnu-ranlib /<>/debian/tmp/usr/lib/i386-linux-gnu/libMUSCLE.a libtool: warning: remember to run 'libtool --finish /usr/lib/i386-linux-gnu' /bin/mkdir -p '/<>/debian/tmp/usr/bin' /bin/bash ../libtool --mode=install /usr/bin/install -c muscle '/<>/debian/tmp/usr/bin' libtool: warning: 'libMUSCLE.la' has not been installed in '/usr/lib/i386-linux-gnu' libtool: install: /usr/bin/install -c .libs/muscle /<>/debian/tmp/usr/bin/muscle /bin/mkdir -p '/<>/debian/tmp/usr/include/libMUSCLE' /usr/bin/install -c -m 644 alpha.h cluster.h clust.h clustsetdf.h clustset.h clustsetmsa.h diaglist.h distcalc.h distfunc.h dpregionlist.h dpreglist.h edgelist.h enumopts.h enums.h estring.h gapscoredimer.h gonnet.h intmath.h msadist.h msa.h muscle.h objscore.h params.h profile.h pwpath.h refine.h scorehistory.h seq.h seqvect.h textfile.h timing.h tree.h types.h unixio.h threadstorage.h '/<>/debian/tmp/usr/include/libMUSCLE' make[3]: Leaving directory '/<>/libMUSCLE' make[2]: Leaving directory '/<>/libMUSCLE' make[2]: Entering directory '/<>' make[3]: Entering directory '/<>' make[3]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/<>/debian/tmp/usr/lib/i386-linux-gnu/pkgconfig' /usr/bin/install -c -m 644 libMUSCLE.pc '/<>/debian/tmp/usr/lib/i386-linux-gnu/pkgconfig' make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' debian/rules override_dh_install make[1]: Entering directory '/<>' dh_install d-shlibmove --commit \ --multiarch \ --devunversioned \ --exclude-la \ --movedev debian/tmp/usr/include/* usr/include \ --movedev "debian/tmp/usr/lib/*/pkgconfig/*.pc" usr/lib/i386-linux-gnu/pkgconfig \ debian/tmp/usr/lib/*/*.so Library package automatic movement utility set -e install -d -m 755 debian/libmuscle-dev/usr/lib/i386-linux-gnu install -d -m 755 debian/libmuscle1/usr/lib/i386-linux-gnu mv debian/tmp/usr/lib/i386-linux-gnu/libMUSCLE.a debian/libmuscle-dev/usr/lib/i386-linux-gnu mv debian/tmp/usr/lib/i386-linux-gnu/libMUSCLE.so debian/libmuscle-dev/usr/lib/i386-linux-gnu mv /<>/debian/tmp/usr/lib/i386-linux-gnu/libMUSCLE.so.1 debian/libmuscle1/usr/lib/i386-linux-gnu mv /<>/debian/tmp/usr/lib/i386-linux-gnu/libMUSCLE.so.1.0.0 debian/libmuscle1/usr/lib/i386-linux-gnu PKGDEV=libmuscle-dev PKGSHL=libmuscle1 install -d -m 755 debian/libmuscle-dev/usr/include mv debian/tmp/usr/include/libMUSCLE debian/libmuscle-dev/usr/include install -d -m 755 debian/libmuscle-dev/usr/lib/i386-linux-gnu/pkgconfig mv debian/tmp/usr/lib/*/pkgconfig/*.pc debian/libmuscle-dev/usr/lib/i386-linux-gnu/pkgconfig dh_link -plibmuscle1 usr/lib/i386-linux-gnu/libMUSCLE.so.1 usr/lib/i386-linux-gnu/libMUSCLE-3.7.so.1 find debian -name "lib*.la" -delete # The binary is taken rather from the package muscle rm -rf debian/tmp/usr/bin/muscle make[1]: Leaving directory '/<>' dh_installdocs -a dh_installchangelogs -a dh_lintian -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_dwz -a dh_strip -a dh_makeshlibs -a dpkg-gensymbols: warning: some new symbols appeared in the symbols file: see diff output below dpkg-gensymbols: warning: debian/libmuscle1/DEBIAN/symbols doesn't match completely debian/libmuscle1.symbols --- debian/libmuscle1.symbols (libmuscle1_3.7+4565-7_i386) +++ dpkg-gensymbolsifja9d 2021-12-30 20:37:52.601101781 +0000 @@ -838,9 +838,14 @@ _ZNK6muscle8EdgeList5LogMeEv@Base 3.7+4565 _ZNK6muscle8EdgeList7GetEdgeEjPjS1_@Base 3.7+4565 _ZNK6muscle8EdgeList8GetCountEv@Base 3.7+4565 + _ZNSt12_Vector_baseIcSaIcEED1Ev@Base 3.7+4565-7 + _ZNSt12_Vector_baseIcSaIcEED2Ev@Base 3.7+4565-7 + _ZNSt12_Vector_baseIjSaIjEED1Ev@Base 3.7+4565-7 + _ZNSt12_Vector_baseIjSaIjEED2Ev@Base 3.7+4565-7 _ZNSt6vectorIPN6muscle3SeqESaIS2_EE17_M_realloc_insertIJRKS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 3.7+4565 (optional)_ZNSt6vectorIcSaIcEE17_M_realloc_insertIJRKcEEEvN9__gnu_cxx17__normal_iteratorIPcS1_EEDpOT_@Base 3.7+4565 - (optional)_ZNSt6vectorIcSaIcEE8_M_eraseEN9__gnu_cxx17__normal_iteratorIPcS1_EE@Base 3.7+4565 + _ZNSt6vectorIcSaIcEE17_M_realloc_insertIJcEEEvN9__gnu_cxx17__normal_iteratorIPcS1_EEDpOT_@Base 3.7+4565-7 +#MISSING: 3.7+4565-7# (optional)_ZNSt6vectorIcSaIcEE8_M_eraseEN9__gnu_cxx17__normal_iteratorIPcS1_EE@Base 3.7+4565 (arch-bits=32)_ZNSt6vectorIjSaIjEE17_M_realloc_insertIJRKjEEEvN9__gnu_cxx17__normal_iteratorIPjS1_EEDpOT_@Base 3.7+4565 (arch-bits=64)_ZNSt6vectorImSaImEE17_M_realloc_insertIJRKmEEEvN9__gnu_cxx17__normal_iteratorIPmS1_EEDpOT_@Base 3.7+4565 _ZTIN6muscle10ClustSetDFE@Base 3.7+4565 dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'libmuscle-dev' in '../libmuscle-dev_3.7+4565-7_i386.deb'. dpkg-deb: building package 'libmuscle1' in '../libmuscle1_3.7+4565-7_i386.deb'. dpkg-deb: building package 'libmuscle1-dbgsym' in '../libmuscle1-dbgsym_3.7+4565-7_i386.deb'. dpkg-genbuildinfo --build=any -O../libmuscle_3.7+4565-7_i386.buildinfo dpkg-genchanges --build=any -O../libmuscle_3.7+4565-7_i386.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2021-12-30T20:38:01Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ libmuscle_3.7+4565-7_i386.changes: ---------------------------------- Format: 1.8 Date: Mon, 16 Nov 2020 20:06:36 +0100 Source: libmuscle Binary: libmuscle-dev libmuscle1 libmuscle1-dbgsym Built-For-Profiles: cross nocheck Architecture: i386 Version: 3.7+4565-7 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: libmuscle-dev - multiple alignment development library for protein sequences libmuscle1 - multiple alignment library for protein sequences Changes: libmuscle (3.7+4565-7) unstable; urgency=medium . * Standards-Version: 4.5.0 (routine-update) * debhelper-compat 13 (routine-update) * Secure URI in copyright format (routine-update) * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) * Trim trailing whitespace. * Remove *.la file and usr/bin/muscle to enable dh_missing --fail-missing * Fix lintian override Checksums-Sha1: fe9bc2d6b1a60211e75752045234c0f28e783f9f 290456 libmuscle-dev_3.7+4565-7_i386.deb d380f5debe1db20d3452047b502213d34be50f82 822148 libmuscle1-dbgsym_3.7+4565-7_i386.deb 2c12fd47eb053fcc777fd06e8eaec1d9654eebe1 234212 libmuscle1_3.7+4565-7_i386.deb ad2deb5754f443b0f83fb71a4db5bfcb570654bd 5652 libmuscle_3.7+4565-7_i386.buildinfo Checksums-Sha256: 1d1e201d7292aea2167194fbb674206b718ef93be92b148e138195d84917fc9c 290456 libmuscle-dev_3.7+4565-7_i386.deb 6e31ac2c54080516acd15377a15d9eaa7ebbbfa44d5833b8b9917a58e5029ee0 822148 libmuscle1-dbgsym_3.7+4565-7_i386.deb 5e7417e3f0e433e144b2b7ad9367db81bc3481a527c9d6978477560c45512cce 234212 libmuscle1_3.7+4565-7_i386.deb 62f708af36bded64d0bf6e23062ddf0c1428130fbd3c0a139f65cb882428e14f 5652 libmuscle_3.7+4565-7_i386.buildinfo Files: 6f7d3f2add151e98dc806d9809d8ea0c 290456 libdevel optional libmuscle-dev_3.7+4565-7_i386.deb f4d46f5d3d6f104674e3a289da9914b2 822148 debug optional libmuscle1-dbgsym_3.7+4565-7_i386.deb 8e364989d645c1e90e4eb8c4d6b07b1d 234212 libs optional libmuscle1_3.7+4565-7_i386.deb 7ed65027329b42ce48c1e9ca04d7c898 5652 science optional libmuscle_3.7+4565-7_i386.buildinfo +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: libmuscle Binary: libmuscle-dev libmuscle1 libmuscle1-dbgsym Architecture: i386 Version: 3.7+4565-7 Checksums-Md5: 6f7d3f2add151e98dc806d9809d8ea0c 290456 libmuscle-dev_3.7+4565-7_i386.deb f4d46f5d3d6f104674e3a289da9914b2 822148 libmuscle1-dbgsym_3.7+4565-7_i386.deb 8e364989d645c1e90e4eb8c4d6b07b1d 234212 libmuscle1_3.7+4565-7_i386.deb Checksums-Sha1: fe9bc2d6b1a60211e75752045234c0f28e783f9f 290456 libmuscle-dev_3.7+4565-7_i386.deb d380f5debe1db20d3452047b502213d34be50f82 822148 libmuscle1-dbgsym_3.7+4565-7_i386.deb 2c12fd47eb053fcc777fd06e8eaec1d9654eebe1 234212 libmuscle1_3.7+4565-7_i386.deb Checksums-Sha256: 1d1e201d7292aea2167194fbb674206b718ef93be92b148e138195d84917fc9c 290456 libmuscle-dev_3.7+4565-7_i386.deb 6e31ac2c54080516acd15377a15d9eaa7ebbbfa44d5833b8b9917a58e5029ee0 822148 libmuscle1-dbgsym_3.7+4565-7_i386.deb 5e7417e3f0e433e144b2b7ad9367db81bc3481a527c9d6978477560c45512cce 234212 libmuscle1_3.7+4565-7_i386.deb Build-Origin: Debian Build-Architecture: arm64 Build-Date: Thu, 30 Dec 2021 20:38:00 +0000 Build-Path: /<> Installed-Build-Depends: adduser (= 3.118), apt (= 2.3.13), autoconf (= 2.71-2), automake (= 1:1.16.5-1.1), autopoint (= 0.21-4), autotools-dev (= 20180224.1+nmu1), base-files (= 12), base-passwd (= 3.5.52), bash (= 5.1-5+b1), binutils (= 2.37-10), binutils-aarch64-linux-gnu (= 2.37-10), binutils-common (= 2.37-10), bsdextrautils (= 2.37.2-5), bsdutils (= 1:2.37.2-5), build-essential (= 12.9), bzip2 (= 1.0.8-5), coreutils (= 8.32-4.1), cpp (= 4:11.2.0-2), cpp-11 (= 11.2.0-13), d-shlibs (= 0.104), dash (= 0.5.11+git20210903+057cd650a4ed-3), debconf (= 1.5.79), debhelper (= 13.6), debian-archive-keyring (= 2021.1.1), debianutils (= 5.5-1), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.13.0-1), diffutils (= 1:3.7-5), dpkg (= 1.21.1), dpkg-dev (= 1.21.1), dwz (= 0.14-1), file (= 1:5.41-2), findutils (= 4.8.0-1), g++ (= 4:11.2.0-2), g++-11 (= 11.2.0-13), gcc (= 4:11.2.0-2), gcc-11 (= 11.2.0-13), gcc-11-base (= 11.2.0-13), gettext (= 0.21-4), gettext-base (= 0.21-4), gpgv (= 2.2.27-3), grep (= 3.7-1), groff-base (= 1.22.4-8), gzip (= 1.10-4), hostname (= 3.23), init-system-helpers (= 1.61), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.3.1-1), libapt-pkg6.0 (= 2.3.13), libarchive-zip-perl (= 1.68-1), libasan6 (= 11.2.0-13), libatomic1 (= 11.2.0-13), libattr1 (= 1:2.5.1-1), libaudit-common (= 1:3.0.6-1), libaudit1 (= 1:3.0.6-1+b1), libbinutils (= 2.37-10), libblkid1 (= 2.37.2-5), libbz2-1.0 (= 1.0.8-5), libc-bin (= 2.33-1), libc-dev-bin (= 2.33-1), libc6 (= 2.33-1), libc6-dev (= 2.33-1), libcap-ng0 (= 0.7.9-2.2+b1), libcap2 (= 1:2.44-1), libcc1-0 (= 11.2.0-13), libcom-err2 (= 1.46.4-1), libcrypt-dev (= 1:4.4.27-1), libcrypt1 (= 1:4.4.27-1), libctf-nobfd0 (= 2.37-10), libctf0 (= 2.37-10), libdb5.3 (= 5.3.28+dfsg1-0.8), libdebconfclient0 (= 0.261), libdebhelper-perl (= 13.6), libdpkg-perl (= 1.21.1), libelf1 (= 0.186-1), libffi8 (= 3.4.2-3), libfile-stripnondeterminism-perl (= 1.13.0-1), libgcc-11-dev (= 11.2.0-13), libgcc-s1 (= 11.2.0-13), libgcrypt20 (= 1.9.4-5), libgdbm-compat4 (= 1.22-1), libgdbm6 (= 1.22-1), libglib2.0-0 (= 2.70.2-1), libgmp10 (= 2:6.2.1+dfsg-3), libgnutls30 (= 3.7.2-4), libgomp1 (= 11.2.0-13), libgpg-error0 (= 1.43-1), libgssapi-krb5-2 (= 1.18.3-7), libhogweed6 (= 3.7.3-1), libhwasan0 (= 11.2.0-13), libicu67 (= 67.1-7), libidn2-0 (= 2.3.2-2), libisl23 (= 0.24-2), libitm1 (= 11.2.0-13), libk5crypto3 (= 1.18.3-7), libkeyutils1 (= 1.6.1-2), libkrb5-3 (= 1.18.3-7), libkrb5support0 (= 1.18.3-7), liblsan0 (= 11.2.0-13), liblz4-1 (= 1.9.3-2), liblzma5 (= 5.2.5-2), libmagic-mgc (= 1:5.41-2), libmagic1 (= 1:5.41-2), libmount1 (= 2.37.2-5), libmpc3 (= 1.2.1-1), libmpfr6 (= 4.1.0-3), libnettle8 (= 3.7.3-1), libnsl-dev (= 1.3.0-2), libnsl2 (= 1.3.0-2), libp11-kit0 (= 0.24.0-6), libpam-modules (= 1.4.0-11), libpam-modules-bin (= 1.4.0-11), libpam-runtime (= 1.4.0-11), libpam0g (= 1.4.0-11), libpcre2-8-0 (= 10.39-3), libpcre3 (= 2:8.39-13), libperl5.32 (= 5.32.1-6), libpipeline1 (= 1.5.4-2), libseccomp2 (= 2.5.3-2), libselinux1 (= 3.3-1+b1), libsemanage-common (= 3.3-1), libsemanage2 (= 3.3-1+b1), libsepol2 (= 3.3-1), libsigsegv2 (= 2.13-1), libsmartcols1 (= 2.37.2-5), libssl1.1 (= 1.1.1m-1), libstdc++-11-dev (= 11.2.0-13), libstdc++6 (= 11.2.0-13), libsub-override-perl (= 0.09-2), libsystemd0 (= 249.7-1), libtasn1-6 (= 4.18.0-4), libtinfo6 (= 6.3-1), libtirpc-common (= 1.3.2-2), libtirpc-dev (= 1.3.2-2), libtirpc3 (= 1.3.2-2), libtool (= 2.4.6-15), libtsan0 (= 11.2.0-13), libubsan1 (= 11.2.0-13), libuchardet0 (= 0.0.7-1), libudev1 (= 249.7-1), libunistring2 (= 0.9.10-6), libuuid1 (= 2.37.2-5), libxml2 (= 2.9.12+dfsg-5+b1), libxxhash0 (= 0.8.0-2), libzstd1 (= 1.4.8+dfsg-3), linux-libc-dev (= 5.15.5-2), login (= 1:4.8.1-2), lsb-base (= 11.1.0), m4 (= 1.4.18-5), make (= 4.3-4.1), man-db (= 2.9.4-4), mawk (= 1.3.4.20200120-2), ncurses-base (= 6.3-1), ncurses-bin (= 6.3-1), passwd (= 1:4.8.1-2), patch (= 2.7.6-7), perl (= 5.32.1-6), perl-base (= 5.32.1-6), perl-modules-5.32 (= 5.32.1-6), pkg-config (= 0.29.2-1), po-debconf (= 1.0.21+nmu1), rpcsvc-proto (= 1.4.2-4), sed (= 4.8-1), sensible-utils (= 0.0.17), sysvinit-utils (= 3.01-1), tar (= 1.34+dfsg-1), util-linux (= 2.37.2-5), xz-utils (= 5.2.5-2), zlib1g (= 1:1.2.11.dfsg-2) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="en_GB.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1605553596" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ libmuscle-dev_3.7+4565-7_i386.deb --------------------------------- new Debian package, version 2.0. size 290456 bytes: control archive=1872 bytes. 939 bytes, 24 lines control 2702 bytes, 40 lines md5sums Package: libmuscle-dev Source: libmuscle Version: 3.7+4565-7 Architecture: i386 Maintainer: Debian Med Packaging Team Installed-Size: 1264 Depends: libmuscle1 (= 3.7+4565-7) Conflicts: libmuscle-3.7-dev Replaces: libmuscle-3.7-dev Provides: libmuscle-3.7-dev Section: libdevel Priority: optional Homepage: http://sourceforge.net/p/mauve/code/HEAD/tree/muscle/trunk/ Description: multiple alignment development library for protein sequences MUSCLE is a multiple alignment program for protein sequences. MUSCLE stands for multiple sequence comparison by log-expectation. In the authors tests, MUSCLE achieved the highest scores of all tested programs on several alignment accuracy benchmarks, and is also one of the fastest programs out there. . This library was derived from the original MUSCLE and turned into a library. . This package contains the static library and header files. drwxr-xr-x root/root 0 2020-11-16 19:06 ./ drwxr-xr-x root/root 0 2020-11-16 19:06 ./usr/ drwxr-xr-x root/root 0 2020-11-16 19:06 ./usr/include/ drwxr-xr-x root/root 0 2020-11-16 19:06 ./usr/include/libMUSCLE/ -rw-r--r-- root/root 2248 2020-11-16 19:06 ./usr/include/libMUSCLE/alpha.h -rw-r--r-- root/root 4684 2020-11-16 19:06 ./usr/include/libMUSCLE/clust.h -rw-r--r-- root/root 2392 2020-11-16 19:06 ./usr/include/libMUSCLE/cluster.h -rw-r--r-- root/root 623 2020-11-16 19:06 ./usr/include/libMUSCLE/clustset.h -rw-r--r-- root/root 1087 2020-11-16 19:06 ./usr/include/libMUSCLE/clustsetdf.h -rw-r--r-- root/root 1329 2020-11-16 19:06 ./usr/include/libMUSCLE/clustsetmsa.h -rw-r--r-- root/root 1927 2020-11-16 19:06 ./usr/include/libMUSCLE/diaglist.h -rw-r--r-- root/root 1117 2020-11-16 19:06 ./usr/include/libMUSCLE/distcalc.h -rw-r--r-- root/root 854 2020-11-16 19:06 ./usr/include/libMUSCLE/distfunc.h -rw-r--r-- root/root 1075 2020-11-16 19:06 ./usr/include/libMUSCLE/dpregionlist.h -rw-r--r-- root/root 1100 2020-11-16 19:06 ./usr/include/libMUSCLE/dpreglist.h -rw-r--r-- root/root 554 2020-11-16 19:06 ./usr/include/libMUSCLE/edgelist.h -rw-r--r-- root/root 307 2020-11-16 19:06 ./usr/include/libMUSCLE/enumopts.h -rw-r--r-- root/root 2053 2020-11-16 19:06 ./usr/include/libMUSCLE/enums.h -rw-r--r-- root/root 574 2020-11-16 19:06 ./usr/include/libMUSCLE/estring.h -rw-r--r-- root/root 2916 2020-11-16 19:06 ./usr/include/libMUSCLE/gapscoredimer.h -rw-r--r-- root/root 296 2020-11-16 19:06 ./usr/include/libMUSCLE/gonnet.h -rw-r--r-- root/root 5963 2020-11-16 19:06 ./usr/include/libMUSCLE/intmath.h -rw-r--r-- root/root 6291 2020-11-16 19:06 ./usr/include/libMUSCLE/msa.h -rw-r--r-- root/root 882 2020-11-16 19:06 ./usr/include/libMUSCLE/msadist.h -rw-r--r-- root/root 12119 2020-11-16 19:06 ./usr/include/libMUSCLE/muscle.h -rw-r--r-- root/root 1359 2020-11-16 19:06 ./usr/include/libMUSCLE/objscore.h -rw-r--r-- root/root 3555 2020-11-16 19:06 ./usr/include/libMUSCLE/params.h -rw-r--r-- root/root 4746 2020-11-16 19:06 ./usr/include/libMUSCLE/profile.h -rw-r--r-- root/root 2477 2020-11-16 19:06 ./usr/include/libMUSCLE/pwpath.h -rw-r--r-- root/root 416 2020-11-16 19:06 ./usr/include/libMUSCLE/refine.h -rw-r--r-- root/root 555 2020-11-16 19:06 ./usr/include/libMUSCLE/scorehistory.h -rw-r--r-- root/root 1915 2020-11-16 19:06 ./usr/include/libMUSCLE/seq.h -rw-r--r-- root/root 1607 2020-11-16 19:06 ./usr/include/libMUSCLE/seqvect.h -rw-r--r-- root/root 1633 2020-11-16 19:06 ./usr/include/libMUSCLE/textfile.h -rw-r--r-- root/root 1379 2020-11-16 19:06 ./usr/include/libMUSCLE/threadstorage.h -rw-r--r-- root/root 468 2020-11-16 19:06 ./usr/include/libMUSCLE/timing.h -rw-r--r-- root/root 9608 2020-11-16 19:06 ./usr/include/libMUSCLE/tree.h -rw-r--r-- root/root 2301 2020-11-16 19:06 ./usr/include/libMUSCLE/types.h -rw-r--r-- root/root 180 2020-11-16 19:06 ./usr/include/libMUSCLE/unixio.h drwxr-xr-x root/root 0 2020-11-16 19:06 ./usr/lib/ drwxr-xr-x root/root 0 2020-11-16 19:06 ./usr/lib/i386-linux-gnu/ -rw-r--r-- root/root 1173718 2020-11-16 19:06 ./usr/lib/i386-linux-gnu/libMUSCLE.a lrwxrwxrwx root/root 0 2020-11-16 19:06 ./usr/lib/i386-linux-gnu/libMUSCLE.so -> libMUSCLE.so.1.0.0 drwxr-xr-x root/root 0 2020-11-16 19:06 ./usr/lib/i386-linux-gnu/pkgconfig/ -rw-r--r-- root/root 277 2020-11-16 19:06 ./usr/lib/i386-linux-gnu/pkgconfig/libMUSCLE.pc drwxr-xr-x root/root 0 2020-11-16 19:06 ./usr/share/ drwxr-xr-x root/root 0 2020-11-16 19:06 ./usr/share/doc/ drwxr-xr-x root/root 0 2020-11-16 19:06 ./usr/share/doc/libmuscle-dev/ -rw-r--r-- root/root 432 2020-11-16 19:06 ./usr/share/doc/libmuscle-dev/README.Debian -rw-r--r-- root/root 833 2020-11-16 19:06 ./usr/share/doc/libmuscle-dev/changelog.Debian.gz -rw-r--r-- root/root 1105 2020-11-16 19:06 ./usr/share/doc/libmuscle-dev/copyright libmuscle1-dbgsym_3.7+4565-7_i386.deb ------------------------------------- new Debian package, version 2.0. size 822148 bytes: control archive=540 bytes. 386 bytes, 12 lines control 106 bytes, 1 lines md5sums Package: libmuscle1-dbgsym Source: libmuscle Version: 3.7+4565-7 Auto-Built-Package: debug-symbols Architecture: i386 Maintainer: Debian Med Packaging Team Installed-Size: 866 Depends: libmuscle1 (= 3.7+4565-7) Section: debug Priority: optional Description: debug symbols for libmuscle1 Build-Ids: f6f96e6277119f62d7670071a19c86a3c70fdd3b drwxr-xr-x root/root 0 2020-11-16 19:06 ./ drwxr-xr-x root/root 0 2020-11-16 19:06 ./usr/ drwxr-xr-x root/root 0 2020-11-16 19:06 ./usr/lib/ drwxr-xr-x root/root 0 2020-11-16 19:06 ./usr/lib/debug/ drwxr-xr-x root/root 0 2020-11-16 19:06 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2020-11-16 19:06 ./usr/lib/debug/.build-id/f6/ -rw-r--r-- root/root 875616 2020-11-16 19:06 ./usr/lib/debug/.build-id/f6/f96e6277119f62d7670071a19c86a3c70fdd3b.debug drwxr-xr-x root/root 0 2020-11-16 19:06 ./usr/share/ drwxr-xr-x root/root 0 2020-11-16 19:06 ./usr/share/doc/ lrwxrwxrwx root/root 0 2020-11-16 19:06 ./usr/share/doc/libmuscle1-dbgsym -> libmuscle1 libmuscle1_3.7+4565-7_i386.deb ------------------------------ new Debian package, version 2.0. size 234212 bytes: control archive=7960 bytes. 947 bytes, 24 lines control 297 bytes, 4 lines md5sums 37 bytes, 1 lines shlibs 44127 bytes, 904 lines symbols 65 bytes, 2 lines triggers Package: libmuscle1 Source: libmuscle Version: 3.7+4565-7 Architecture: i386 Maintainer: Debian Med Packaging Team Installed-Size: 695 Depends: libc6 (>= 2.29), libgcc-s1 (>= 3.0), libgomp1 (>= 4.2.1), libstdc++6 (>= 5) Conflicts: libmuscle-3.7-1 Replaces: libmuscle-3.7-1 Provides: libmuscle-3.7-1 Section: libs Priority: optional Homepage: http://sourceforge.net/p/mauve/code/HEAD/tree/muscle/trunk/ Description: multiple alignment library for protein sequences MUSCLE is a multiple alignment program for protein sequences. MUSCLE stands for multiple sequence comparison by log-expectation. In the authors tests, MUSCLE achieved the highest scores of all tested programs on several alignment accuracy benchmarks, and is also one of the fastest programs out there. . This library was derived from the original MUSCLE and turned into a library. . This package contains the dynamic library. drwxr-xr-x root/root 0 2020-11-16 19:06 ./ drwxr-xr-x root/root 0 2020-11-16 19:06 ./usr/ drwxr-xr-x root/root 0 2020-11-16 19:06 ./usr/lib/ drwxr-xr-x root/root 0 2020-11-16 19:06 ./usr/lib/i386-linux-gnu/ lrwxrwxrwx root/root 0 2020-11-16 19:06 ./usr/lib/i386-linux-gnu/libMUSCLE-3.7.so.1 -> libMUSCLE.so.1 lrwxrwxrwx root/root 0 2020-11-16 19:06 ./usr/lib/i386-linux-gnu/libMUSCLE.so.1 -> libMUSCLE.so.1.0.0 -rw-r--r-- root/root 647860 2020-11-16 19:06 ./usr/lib/i386-linux-gnu/libMUSCLE.so.1.0.0 drwxr-xr-x root/root 0 2020-11-16 19:06 ./usr/share/ drwxr-xr-x root/root 0 2020-11-16 19:06 ./usr/share/doc/ drwxr-xr-x root/root 0 2020-11-16 19:06 ./usr/share/doc/libmuscle1/ -rw-r--r-- root/root 833 2020-11-16 19:06 ./usr/share/doc/libmuscle1/changelog.Debian.gz -rw-r--r-- root/root 1105 2020-11-16 19:06 ./usr/share/doc/libmuscle1/copyright drwxr-xr-x root/root 0 2020-11-16 19:06 ./usr/share/lintian/ drwxr-xr-x root/root 0 2020-11-16 19:06 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 220 2020-11-16 19:06 ./usr/share/lintian/overrides/libmuscle1 lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:arm64 Filtered Build-Depends: lintian:arm64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/apt_archive/sbuild-build-depends-lintian-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [963 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [550 B] Get:5 copy:/<>/apt_archive ./ Packages [638 B] Fetched 2151 B in 0s (51.0 kB/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: diffstat gpg gpgconf libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libcapture-tiny-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdata-validate-ip-perl libdata-validate-uri-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libexception-class-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfont-ttf-perl libhtml-html5-entities-perl libimport-into-perl libio-interactive-perl libio-prompt-tiny-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-moreutils-perl liblist-moreutils-xs-perl liblist-someutils-perl liblist-utilsby-perl liblzo2-2 libmarkdown2 libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnet-ipv6addr-perl libnet-netmask-perl libnetaddr-ip-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl libreadline8 librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libsqlite3-0 libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libsyntax-keyword-try-perl libterm-readkey-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libxs-parse-keyword-perl libyaml-0-2 libyaml-libyaml-perl lintian lzip lzop patchutils readline-common t1utils unzip Suggested packages: libxml-parser-perl libscalar-number-perl libbareword-filehandles-perl libindirect-perl libmultidimensional-perl libbusiness-isbn-perl libwww-perl binutils-multiarch libtext-template-perl readline-doc zip Recommended packages: gnupg liblist-someutils-xs-perl libmath-base85-perl libsocket6-perl libpackage-stash-xs-perl The following NEW packages will be installed: diffstat gpg gpgconf libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libcapture-tiny-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdata-validate-ip-perl libdata-validate-uri-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libexception-class-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfont-ttf-perl libhtml-html5-entities-perl libimport-into-perl libio-interactive-perl libio-prompt-tiny-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-moreutils-perl liblist-moreutils-xs-perl liblist-someutils-perl liblist-utilsby-perl liblzo2-2 libmarkdown2 libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnet-ipv6addr-perl libnet-netmask-perl libnetaddr-ip-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl libreadline8 librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libsqlite3-0 libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libsyntax-keyword-try-perl libterm-readkey-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libxs-parse-keyword-perl libyaml-0-2 libyaml-libyaml-perl lintian lzip lzop patchutils readline-common sbuild-build-depends-lintian-dummy:i386 t1utils unzip 0 upgraded, 103 newly installed, 0 to remove and 0 not upgraded. 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6.0-26 [165 kB] Get:103 http://mirror.einval.org/debian sid/main arm64 lintian all 2.114.0 [1382 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 7631 kB in 0s (38.8 MB/s) Selecting previously unselected package readline-common. 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Setting up liblist-utilsby-perl (0.11-1) ... Setting up libnet-netmask-perl (2.0001-1) ... Setting up libsub-install-perl (0.928-1.1) ... Setting up libnumber-compare-perl (0.03-2) ... Setting up patchutils (0.4.2-1) ... Setting up libjson-maybexs-perl (1.004003-1) ... Setting up libnetaddr-ip-perl (4.079+dfsg-1+b5) ... Setting up libclass-data-inheritable-perl (0.08-3) ... Setting up libxs-parse-keyword-perl (0.21-1) ... Setting up libfile-find-rule-perl (0.34-1) ... Setting up libipc-system-simple-perl (1.30-1) ... Setting up libnet-domain-tld-perl (1.75-1.1) ... Setting up libperlio-utf8-strict-perl (0.008-1+b1) ... Setting up libio-prompt-tiny-perl (0.003-1) ... Setting up lzip (1.22-5) ... update-alternatives: using /usr/bin/lzip.lzip to provide /usr/bin/lzip (lzip) in auto mode update-alternatives: using /usr/bin/lzip.lzip to provide /usr/bin/lzip-compressor (lzip-compressor) in auto mode update-alternatives: using /usr/bin/lzip.lzip to provide /usr/bin/lzip-decompressor (lzip-decompressor) in auto mode Setting up t1utils (1.41-4) ... Setting up diffstat (1.64-1) ... Setting up libvariable-magic-perl (0.62-1+b3) ... Setting up libb-hooks-op-check-perl (0.22-1+b3) ... Setting up liblist-moreutils-xs-perl (0.430-2) ... Setting up libparams-util-perl (1.102-1+b1) ... Setting up libtime-duration-perl (1.21-1) ... Setting up libtext-xslate-perl:arm64 (3.5.9-1) ... Setting up libsub-exporter-progressive-perl (0.001013-1) ... Setting up libcapture-tiny-perl (0.48-1) ... Setting up libtimedate-perl (2.3300-2) ... Setting up libsub-name-perl (0.26-1+b1) ... Setting up libsyntax-keyword-try-perl (0.26-1) ... Setting up libdata-validate-domain-perl (0.10-1.1) ... Setting up libproc-processtable-perl:arm64 (0.634-1) ... Setting up libpath-tiny-perl (0.120-1) ... Setting up lzop (1.04-2) ... Setting up librole-tiny-perl (2.002004-1) ... Setting up libipc-run3-perl (0.048-2) ... Setting up libaliased-perl (0.34-1.1) ... Setting up libstrictures-perl (2.000006-1) ... Setting up libsub-quote-perl (2.006006-1) ... Setting up libdevel-stacktrace-perl (2.0400-1) ... Setting up libclass-xsaccessor-perl (1.19-3+b7) ... Setting up libsort-versions-perl (1.62-1) ... Setting up libexporter-tiny-perl (1.002002-1) ... Setting up libterm-readkey-perl (2.38-1+b2) ... Setting up libfont-ttf-perl (1.06-1.1) ... Setting up libtext-levenshteinxs-perl (0.03-4+b8) ... Setting up libperlio-gzip-perl (0.19-1+b7) ... Setting up readline-common (8.1-2) ... Setting up libhtml-html5-entities-perl (0.004-1.1) ... Setting up libsereal-decoder-perl (4.018+ds-1+b1) ... Setting up libmarkdown2:arm64 (2.2.7-2) ... Setting up liburi-perl (5.10-1) ... Setting up libnet-ipv6addr-perl (1.02-1) ... Setting up libdata-validate-ip-perl (0.30-1) ... Setting up libemail-address-xs-perl (1.04-1+b3) ... Setting up libfile-basedir-perl (0.09-1) ... Setting up liblist-moreutils-perl (0.430-2) ... Setting up libreadline8:arm64 (8.1-2) ... Setting up libtext-markdown-discount-perl:arm64 (0.13-1) ... Setting up libexception-class-perl (1.45-1) ... Setting up libdevel-callchecker-perl (0.008-1+b2) ... Setting up libdata-validate-uri-perl (0.07-1) ... Setting up libdata-optlist-perl (0.112-1) ... Setting up gpgconf (2.2.27-3) ... Setting up gpg (2.2.27-3) ... Setting up libsub-exporter-perl (0.988-1) ... Setting up libiterator-perl (0.03+ds1-1.1) ... Setting up libiterator-util-perl (0.02+ds1-1.1) ... Setting up libparams-classify-perl (0.015-1+b3) ... Setting up libmodule-runtime-perl (0.016-1) ... Setting up libconst-fast-perl (0.014-1.1) ... Setting up libdata-dpath-perl (0.58-1) ... Setting up libmodule-implementation-perl (0.09-1.1) ... Setting up libpackage-stash-perl (0.39-1) ... Setting up libimport-into-perl (1.002005-1) ... Setting up libmoo-perl (2.005004-3) ... Setting up liblist-someutils-perl (0.58-1) ... Setting up libmoox-aliases-perl (0.001006-1.1) ... Setting up libb-hooks-endofscope-perl (0.25-1) ... Setting up libnamespace-clean-perl (0.27-1) ... Setting up lintian (2.114.0) ... Setting up sbuild-build-depends-lintian-dummy:i386 (0.invalid.0) ... Processing triggers for man-db (2.9.4-4) ... Not building database; man-db/auto-update is not 'true'. Processing triggers for libc-bin (2.33-1) ... I: Lintian run was successful. +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: arm64 Build Profiles: cross nocheck Build Type: any Build-Space: 36408 Build-Time: 406 Distribution: unstable Foreign Architectures: i386 Host Architecture: i386 Install-Time: 35 Job: libmuscle_3.7+4565-7 Lintian: pass Machine Architecture: arm64 Package: libmuscle Package-Time: 469 Source-Version: 3.7+4565-7 Space: 36408 Status: successful Version: 3.7+4565-7 -------------------------------------------------------------------------------- Finished at 2021-12-30T20:38:01Z Build needed 00:07:49, 36408k disk space