sbuild (Debian sbuild) 0.73.0 (23 Dec 2016) on gcc131.bak.milne.osuosl.org +==============================================================================+ | libpsortb 1.0+dfsg-3 (armhf) Fri, 12 Apr 2019 08:05:14 +0000 | +==============================================================================+ Package: libpsortb Version: 1.0+dfsg-3 Source Version: 1.0+dfsg-3 Distribution: unstable Machine Architecture: amd64 Host Architecture: armhf Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/unstable-amd64-sbuild-d1bb671d-8620-42da-b158-bc99f91c445c' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Hit:1 http://debian.oregonstate.edu/debian unstable InRelease Get:2 http://debian.oregonstate.edu/debian unstable/main armhf Packages [8061 kB] Fetched 8061 kB in 2s (4566 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'libpsortb' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/libpsortb.git Please use: git clone https://salsa.debian.org/med-team/libpsortb.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 103 kB of source archives. Get:1 http://debian.oregonstate.edu/debian unstable/main libpsortb 1.0+dfsg-3 (dsc) [2157 B] Get:2 http://debian.oregonstate.edu/debian unstable/main libpsortb 1.0+dfsg-3 (tar) [95.6 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main libpsortb 1.0+dfsg-3 (diff) [4956 B] Fetched 103 kB in 1s (184 kB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/libpsortb-3rEoBL/libpsortb-1.0+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/libpsortb-3rEoBL' with '<>' +------------------------------------------------------------------------------+ | Install crossbuild-essential | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: build-essential:amd64, fakeroot:amd64, crossbuild-essential-armhf:amd64 Filtered Build-Depends: build-essential:amd64, fakeroot:amd64, crossbuild-essential-armhf:amd64 dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-tHAPyQ/apt_archive/sbuild-build-depends-core-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy dpkg-scanpackages: info: Wrote 1 entries to output Packages file. Ign:1 copy:/<>/resolver-tHAPyQ/apt_archive ./ InRelease Get:2 copy:/<>/resolver-tHAPyQ/apt_archive ./ Release [957 B] Ign:3 copy:/<>/resolver-tHAPyQ/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-tHAPyQ/apt_archive ./ Sources [363 B] Get:5 copy:/<>/resolver-tHAPyQ/apt_archive ./ Packages [452 B] Fetched 1772 B in 0s (170 kB/s) Reading package lists... Reading package lists... Install core build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: binutils-arm-linux-gnueabihf cpp-8-arm-linux-gnueabihf cpp-arm-linux-gnueabihf cross-config crossbuild-essential-armhf dpkg-cross file g++-8-arm-linux-gnueabihf g++-arm-linux-gnueabihf gcc-8-arm-linux-gnueabihf gcc-8-arm-linux-gnueabihf-base gcc-8-cross-base gcc-arm-linux-gnueabihf libasan5-armhf-cross libatomic1-armhf-cross libc6-armhf-cross libc6-dev-armhf-cross libconfig-auto-perl libconfig-inifiles-perl libdebian-dpkgcross-perl libfile-homedir-perl libfile-which-perl libgcc-8-dev-armhf-cross libgcc1-armhf-cross libgomp1-armhf-cross libicu63 libio-string-perl liblocale-gettext-perl libmagic-mgc libmagic1 libstdc++-8-dev-armhf-cross libstdc++6-armhf-cross libubsan1-armhf-cross libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev-armhf-cross sensible-utils ucf Suggested packages: binutils-doc gcc-8-locales cpp-doc binutils-multiarch gcc-8-doc libstdc++6-8-dbg-armhf-cross libgcc1-dbg-armhf-cross libgomp1-dbg-armhf-cross libitm1-dbg-armhf-cross libatomic1-dbg-armhf-cross libasan5-dbg-armhf-cross liblsan0-dbg-armhf-cross libtsan0-dbg-armhf-cross libubsan1-dbg-armhf-cross libmpx2-dbg-armhf-cross libquadmath0-dbg-armhf-cross manpages-dev autoconf automake libtool flex bison gdb-arm-linux-gnueabihf gcc-doc libyaml-shell-perl Recommended packages: libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl The following NEW packages will be installed: binutils-arm-linux-gnueabihf cpp-8-arm-linux-gnueabihf cpp-arm-linux-gnueabihf cross-config crossbuild-essential-armhf dpkg-cross file g++-8-arm-linux-gnueabihf g++-arm-linux-gnueabihf gcc-8-arm-linux-gnueabihf gcc-8-arm-linux-gnueabihf-base gcc-8-cross-base gcc-arm-linux-gnueabihf libasan5-armhf-cross libatomic1-armhf-cross libc6-armhf-cross libc6-dev-armhf-cross libconfig-auto-perl libconfig-inifiles-perl libdebian-dpkgcross-perl libfile-homedir-perl libfile-which-perl libgcc-8-dev-armhf-cross libgcc1-armhf-cross libgomp1-armhf-cross libicu63 libio-string-perl liblocale-gettext-perl libmagic-mgc libmagic1 libstdc++-8-dev-armhf-cross libstdc++6-armhf-cross libubsan1-armhf-cross libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev-armhf-cross sbuild-build-depends-core-dummy:armhf sensible-utils ucf 0 upgraded, 44 newly installed, 0 to remove and 0 not upgraded. Need to get 41.8 MB of archives. After this operation, 152 MB of additional disk space will be used. Get:1 copy:/<>/resolver-tHAPyQ/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [876 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-3+b4 [18.9 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 sensible-utils all 0.0.12 [15.8 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic-mgc amd64 1:5.35-4 [242 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic1 amd64 1:5.35-4 [117 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 file amd64 1:5.35-4 [66.3 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 ucf all 3.0038+nmu1 [69.0 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 binutils-arm-linux-gnueabihf amd64 2.31.1-16 [2834 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-8-arm-linux-gnueabihf-base amd64 8.3.0-4cross1 [191 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-8-arm-linux-gnueabihf amd64 8.3.0-4cross1 [6553 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-arm-linux-gnueabihf amd64 4:8.3.0-1 [16.5 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 cross-config all 2.6.15-2 [39.7 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-8-cross-base all 8.3.0-4cross1 [186 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-armhf-cross all 2.28-7cross1 [1170 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc1-armhf-cross all 1:8.3.0-4cross1 [37.2 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 libgomp1-armhf-cross all 8.3.0-4cross1 [63.3 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 libatomic1-armhf-cross all 8.3.0-4cross1 [6572 B] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++6-armhf-cross all 8.3.0-4cross1 [301 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 libasan5-armhf-cross all 8.3.0-4cross1 [329 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 libubsan1-armhf-cross all 8.3.0-4cross1 [103 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-8-dev-armhf-cross all 8.3.0-4cross1 [611 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-8-arm-linux-gnueabihf amd64 8.3.0-4cross1 [6979 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-arm-linux-gnueabihf amd64 4:8.3.0-1 [1456 B] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 linux-libc-dev-armhf-cross all 4.19.20-1cross1 [1212 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev-armhf-cross all 2.28-7cross1 [2148 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-8-dev-armhf-cross all 8.3.0-4cross1 [1557 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 g++-8-arm-linux-gnueabihf amd64 8.3.0-4cross1 [7132 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 g++-arm-linux-gnueabihf amd64 4:8.3.0-1 [1180 B] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-inifiles-perl all 3.000001-1 [51.9 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 libio-string-perl all 1.08-3 [12.3 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 libicu63 amd64 63.1-6 [8292 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 libxml2 amd64 2.9.4+dfsg1-7+b3 [687 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-1 [14.8 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-base-perl all 1.09-1 [20.4 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-perl all 1.00+dfsg-1 [58.6 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-libxml-perl amd64 2.0134+dfsg-1 [344 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-simple-perl all 2.25-1 [72.0 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-perl all 1.27-1 [66.8 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-auto-perl all 0.44-1 [19.5 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-which-perl all 1.23-1 [16.6 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-homedir-perl all 1.004-1 [42.7 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libdebian-dpkgcross-perl all 2.6.15-2 [38.5 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-cross all 2.6.15-2 [49.3 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 crossbuild-essential-armhf all 12.6 [6572 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 41.8 MB in 1s (75.8 MB/s) Selecting previously unselected package liblocale-gettext-perl. (Reading database ... 11936 files and directories currently installed.) Preparing to unpack .../00-liblocale-gettext-perl_1.07-3+b4_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-3+b4) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.12_all.deb ... Unpacking sensible-utils (0.0.12) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../02-libmagic-mgc_1%3a5.35-4_amd64.deb ... Unpacking libmagic-mgc (1:5.35-4) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../03-libmagic1_1%3a5.35-4_amd64.deb ... Unpacking libmagic1:amd64 (1:5.35-4) ... Selecting previously unselected package file. Preparing to unpack .../04-file_1%3a5.35-4_amd64.deb ... Unpacking file (1:5.35-4) ... Selecting previously unselected package ucf. Preparing to unpack .../05-ucf_3.0038+nmu1_all.deb ... Moving old data out of the way Unpacking ucf (3.0038+nmu1) ... 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Unpacking crossbuild-essential-armhf (12.6) ... Selecting previously unselected package sbuild-build-depends-core-dummy:armhf. Preparing to unpack .../43-sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ... Unpacking sbuild-build-depends-core-dummy:armhf (0.invalid.0) ... Setting up libconfig-inifiles-perl (3.000001-1) ... Setting up libfile-which-perl (1.23-1) ... Setting up libc6-armhf-cross (2.28-7cross1) ... Setting up libmagic-mgc (1:5.35-4) ... Setting up gcc-8-cross-base (8.3.0-4cross1) ... Setting up libmagic1:amd64 (1:5.35-4) ... Setting up libxml-namespacesupport-perl (1.12-1) ... Setting up file (1:5.35-4) ... Setting up libatomic1-armhf-cross (8.3.0-4cross1) ... Setting up libyaml-perl (1.27-1) ... Setting up libicu63:amd64 (63.1-6) ... Setting up libxml-sax-base-perl (1.09-1) ... Setting up libio-string-perl (1.08-3) ... Setting up cross-config (2.6.15-2) ... Setting up libgcc1-armhf-cross (1:8.3.0-4cross1) ... Setting up gcc-8-arm-linux-gnueabihf-base:amd64 (8.3.0-4cross1) ... Setting up linux-libc-dev-armhf-cross (4.19.20-1cross1) ... Setting up sensible-utils (0.0.12) ... Setting up libfile-homedir-perl (1.004-1) ... Setting up binutils-arm-linux-gnueabihf (2.31.1-16) ... Setting up libxml2:amd64 (2.9.4+dfsg1-7+b3) ... Setting up liblocale-gettext-perl (1.07-3+b4) ... Setting up cpp-8-arm-linux-gnueabihf (8.3.0-4cross1) ... Setting up libgomp1-armhf-cross (8.3.0-4cross1) ... Setting up libc6-dev-armhf-cross (2.28-7cross1) ... Setting up libstdc++6-armhf-cross (8.3.0-4cross1) ... Setting up libubsan1-armhf-cross (8.3.0-4cross1) ... Setting up ucf (3.0038+nmu1) ... Setting up cpp-arm-linux-gnueabihf (4:8.3.0-1) ... Setting up libxml-sax-perl (1.00+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libasan5-armhf-cross (8.3.0-4cross1) ... Setting up libgcc-8-dev-armhf-cross (8.3.0-4cross1) ... Setting up libxml-libxml-perl (2.0134+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libstdc++-8-dev-armhf-cross (8.3.0-4cross1) ... Setting up gcc-8-arm-linux-gnueabihf (8.3.0-4cross1) ... Setting up gcc-arm-linux-gnueabihf (4:8.3.0-1) ... Setting up g++-8-arm-linux-gnueabihf (8.3.0-4cross1) ... Setting up libxml-simple-perl (2.25-1) ... Setting up g++-arm-linux-gnueabihf (4:8.3.0-1) ... Setting up libconfig-auto-perl (0.44-1) ... Setting up libdebian-dpkgcross-perl (2.6.15-2) ... Setting up dpkg-cross (2.6.15-2) ... Setting up crossbuild-essential-armhf (12.6) ... Setting up sbuild-build-depends-core-dummy:armhf (0.invalid.0) ... Processing triggers for libc-bin (2.28-8) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (armhf included in any) Setup apt archive ----------------- dpkg-deb: building package 'sbuild-build-depends-essential-dummy' in '/<>/resolver-tHAPyQ/apt_archive/sbuild-build-depends-essential-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-essential-dummy dpkg-scanpackages: info: Wrote 2 entries to output Packages file. Ign:1 copy:/<>/resolver-tHAPyQ/apt_archive ./ InRelease Get:2 copy:/<>/resolver-tHAPyQ/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-tHAPyQ/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-tHAPyQ/apt_archive ./ Sources [485 B] Get:5 copy:/<>/resolver-tHAPyQ/apt_archive ./ Packages [571 B] Fetched 2019 B in 0s (0 B/s) Reading package lists... Reading package lists... Install essential build dependencies (apt-based resolver) --------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-essential-dummy:armhf 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 840 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-tHAPyQ/apt_archive ./ sbuild-build-depends-essential-dummy 0.invalid.0 [840 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 840 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-essential-dummy:armhf. (Reading database ... 14982 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-essential-dummy_0.invalid.0_armhf.deb ... Unpacking sbuild-build-depends-essential-dummy:armhf (0.invalid.0) ... Setting up sbuild-build-depends-essential-dummy:armhf (0.invalid.0) ... +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: libc-dev, libstdc++-dev, debhelper (>= 11~), d-shlibs, libsvm-dev, libsquid-dev, libhmmer2-dev, pkg-config Filtered Build-Depends: libc-dev, libstdc++-dev, debhelper (>= 11~), d-shlibs, libsvm-dev, libsquid-dev, libhmmer2-dev, pkg-config dpkg-deb: building package 'sbuild-build-depends-libpsortb-dummy' in '/<>/resolver-tHAPyQ/apt_archive/sbuild-build-depends-libpsortb-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-essential-dummy sbuild-build-depends-libpsortb-dummy dpkg-scanpackages: info: Wrote 3 entries to output Packages file. Ign:1 copy:/<>/resolver-tHAPyQ/apt_archive ./ InRelease Get:2 copy:/<>/resolver-tHAPyQ/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-tHAPyQ/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-tHAPyQ/apt_archive ./ Sources [664 B] Get:5 copy:/<>/resolver-tHAPyQ/apt_archive ./ Packages [750 B] Fetched 2377 B in 0s (0 B/s) Reading package lists... Reading package lists... Install libpsortb build dependencies (apt-based resolver) --------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils d-shlibs debhelper dh-autoreconf dh-strip-nondeterminism dwz gcc-8-base:armhf gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan5:armhf libatomic1:armhf libbsd0 libc6:armhf libc6-dev:armhf libcroco3 libelf1 libfile-stripnondeterminism-perl libgcc-8-dev:armhf libgcc1:armhf libglib2.0-0 libgomp1:armhf libhmmer2-dev:armhf libncurses6 libpipeline1 libpvm3:armhf libsigsegv2 libsquid-dev:armhf libsquid1:armhf libstdc++-8-dev:armhf libstdc++6:armhf libsvm-dev:armhf libsvm3:armhf libtool libubsan1:armhf libuchardet0 linux-libc-dev:armhf m4 man-db pkg-config po-debconf Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff glibc-doc:armhf libc-l10n:armhf locales:armhf manpages-dev:armhf biosquid:armhf libstdc++-8-doc:armhf libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libidn2-0:armhf libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libgpm2 pvm:armhf libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils d-shlibs debhelper dh-autoreconf dh-strip-nondeterminism dwz gcc-8-base:armhf gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan5:armhf libatomic1:armhf libbsd0 libc6:armhf libc6-dev:armhf libcroco3 libelf1 libfile-stripnondeterminism-perl libgcc-8-dev:armhf libgcc1:armhf libglib2.0-0 libgomp1:armhf libhmmer2-dev:armhf libncurses6 libpipeline1 libpvm3:armhf libsigsegv2 libsquid-dev:armhf libsquid1:armhf libstdc++-8-dev:armhf libstdc++6:armhf libsvm-dev:armhf libsvm3:armhf libtool libubsan1:armhf libuchardet0 linux-libc-dev:armhf m4 man-db pkg-config po-debconf sbuild-build-depends-libpsortb-dummy:armhf 0 upgraded, 48 newly installed, 0 to remove and 0 not upgraded. Need to get 19.3 MB of archives. After this operation, 80.7 MB of additional disk space will be used. Get:1 copy:/<>/resolver-tHAPyQ/apt_archive ./ sbuild-build-depends-libpsortb-dummy 0.invalid.0 [908 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 libbsd0 amd64 0.9.1-2 [99.5 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 bsdmainutils amd64 11.1.2+b1 [191 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 libuchardet0 amd64 0.0.6-3 [64.9 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 groff-base amd64 1.22.4-3 [916 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 libpipeline1 amd64 1.5.1-2 [31.2 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 man-db amd64 2.8.5-2 [1274 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 gettext-base amd64 0.19.8.1-9 [123 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 m4 amd64 1.4.18-2 [203 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 autoconf all 2.69-11 [341 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 automake all 1:1.16.1-4 [771 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 autopoint all 0.19.8.1-9 [434 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 d-shlibs all 0.84 [17.2 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 libtool all 2.4.6-10 [547 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 dh-autoreconf all 19 [16.9 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libarchive-zip-perl all 1.64-1 [96.8 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 dh-strip-nondeterminism all 1.1.2-1 [13.0 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 libelf1 amd64 0.176-1 [160 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 dwz amd64 0.12-3 [78.0 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 libglib2.0-0 amd64 2.58.3-1 [1258 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 libcroco3 amd64 0.6.12-3 [145 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 libncurses6 amd64 6.1+20181013-2 [102 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 gettext amd64 0.19.8.1-9 [1303 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 po-debconf all 1.0.21 [248 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 debhelper all 12.1.1 [1016 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main armhf gcc-8-base armhf 8.3.0-6 [191 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main armhf libgcc1 armhf 1:8.3.0-6 [37.2 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main armhf libc6 armhf 2.28-8 [2387 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main armhf libstdc++6 armhf 8.3.0-6 [338 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main armhf libasan5 armhf 8.3.0-6 [336 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main armhf libatomic1 armhf 8.3.0-6 [6740 B] Get:36 http://debian.oregonstate.edu/debian unstable/main armhf linux-libc-dev armhf 4.19.28-2 [1140 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main armhf libc6-dev armhf 2.28-8 [2149 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main armhf libgomp1 armhf 8.3.0-6 [64.8 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main armhf libubsan1 armhf 8.3.0-6 [103 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main armhf libgcc-8-dev armhf 8.3.0-6 [612 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main armhf libhmmer2-dev armhf 2.3.2+dfsg-6 [89.0 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main armhf libpvm3 armhf 3.4.6-2 [76.3 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main armhf libsquid1 armhf 1.9g+cvs20050121-11 [63.4 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main armhf libsquid-dev armhf 1.9g+cvs20050121-11 [375 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main armhf libstdc++-8-dev armhf 8.3.0-6 [1584 kB] Get:46 http://debian.oregonstate.edu/debian unstable/main armhf libsvm3 armhf 3.21+ds-1.2 [36.1 kB] Get:47 http://debian.oregonstate.edu/debian unstable/main armhf libsvm-dev armhf 3.21+ds-1.2 [41.9 kB] Get:48 http://debian.oregonstate.edu/debian unstable/main amd64 pkg-config amd64 0.29-6 [63.5 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 19.3 MB in 0s (42.4 MB/s) Selecting previously unselected package libbsd0:amd64. (Reading database ... 14982 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.9.1-2_amd64.deb ... Unpacking libbsd0:amd64 (0.9.1-2) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2+b1_amd64.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../02-libuchardet0_0.0.6-3_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../03-groff-base_1.22.4-3_amd64.deb ... Unpacking groff-base (1.22.4-3) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../04-libpipeline1_1.5.1-2_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../05-man-db_2.8.5-2_amd64.deb ... Unpacking man-db (2.8.5-2) ... Selecting previously unselected package gettext-base. Preparing to unpack .../06-gettext-base_0.19.8.1-9_amd64.deb ... Unpacking gettext-base (0.19.8.1-9) ... Selecting previously unselected package libsigsegv2:amd64. Preparing to unpack .../07-libsigsegv2_2.12-2_amd64.deb ... Unpacking libsigsegv2:amd64 (2.12-2) ... Selecting previously unselected package m4. Preparing to unpack .../08-m4_1.4.18-2_amd64.deb ... Unpacking m4 (1.4.18-2) ... Selecting previously unselected package autoconf. Preparing to unpack .../09-autoconf_2.69-11_all.deb ... Unpacking autoconf (2.69-11) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../10-autotools-dev_20180224.1_all.deb ... Unpacking autotools-dev (20180224.1) ... Selecting previously unselected package automake. Preparing to unpack .../11-automake_1%3a1.16.1-4_all.deb ... Unpacking automake (1:1.16.1-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../12-autopoint_0.19.8.1-9_all.deb ... Unpacking autopoint (0.19.8.1-9) ... 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Selecting previously unselected package libelf1:amd64. Preparing to unpack .../19-libelf1_0.176-1_amd64.deb ... Unpacking libelf1:amd64 (0.176-1) ... Selecting previously unselected package dwz. Preparing to unpack .../20-dwz_0.12-3_amd64.deb ... Unpacking dwz (0.12-3) ... Selecting previously unselected package libglib2.0-0:amd64. Preparing to unpack .../21-libglib2.0-0_2.58.3-1_amd64.deb ... Unpacking libglib2.0-0:amd64 (2.58.3-1) ... Selecting previously unselected package libcroco3:amd64. Preparing to unpack .../22-libcroco3_0.6.12-3_amd64.deb ... Unpacking libcroco3:amd64 (0.6.12-3) ... Selecting previously unselected package libncurses6:amd64. Preparing to unpack .../23-libncurses6_6.1+20181013-2_amd64.deb ... Unpacking libncurses6:amd64 (6.1+20181013-2) ... Selecting previously unselected package gettext. Preparing to unpack .../24-gettext_0.19.8.1-9_amd64.deb ... Unpacking gettext (0.19.8.1-9) ... Selecting previously unselected package intltool-debian. 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Unpacking libstdc++-8-dev:armhf (8.3.0-6) ... Selecting previously unselected package libsvm3:armhf. Preparing to unpack .../44-libsvm3_3.21+ds-1.2_armhf.deb ... Unpacking libsvm3:armhf (3.21+ds-1.2) ... Selecting previously unselected package libsvm-dev:armhf. Preparing to unpack .../45-libsvm-dev_3.21+ds-1.2_armhf.deb ... Unpacking libsvm-dev:armhf (3.21+ds-1.2) ... Selecting previously unselected package pkg-config. Preparing to unpack .../46-pkg-config_0.29-6_amd64.deb ... Unpacking pkg-config (0.29-6) ... Selecting previously unselected package sbuild-build-depends-libpsortb-dummy:armhf. Preparing to unpack .../47-sbuild-build-depends-libpsortb-dummy_0.invalid.0_armhf.deb ... Unpacking sbuild-build-depends-libpsortb-dummy:armhf (0.invalid.0) ... Setting up libpipeline1:amd64 (1.5.1-2) ... Setting up libarchive-zip-perl (1.64-1) ... Setting up libglib2.0-0:amd64 (2.58.3-1) ... No schema files found: doing nothing. Setting up linux-libc-dev:armhf (4.19.28-2) ... Setting up gettext-base (0.19.8.1-9) ... Setting up autotools-dev (20180224.1) ... Setting up libncurses6:amd64 (6.1+20181013-2) ... Setting up libsigsegv2:amd64 (2.12-2) ... Setting up gcc-8-base:armhf (8.3.0-6) ... Setting up autopoint (0.19.8.1-9) ... Setting up libcroco3:amd64 (0.6.12-3) ... Setting up pkg-config (0.29-6) ... Setting up d-shlibs (0.84) ... Setting up libuchardet0:amd64 (0.0.6-3) ... Setting up libhmmer2-dev:armhf (2.3.2+dfsg-6) ... Setting up libbsd0:amd64 (0.9.1-2) ... Setting up libelf1:amd64 (0.176-1) ... Setting up libfile-stripnondeterminism-perl (1.1.2-1) ... Setting up gettext (0.19.8.1-9) ... Setting up libtool (2.4.6-10) ... Setting up m4 (1.4.18-2) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up autoconf (2.69-11) ... Setting up dwz (0.12-3) ... Setting up groff-base (1.22.4-3) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up po-debconf (1.0.21) ... Setting up man-db (2.8.5-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libc6:armhf (2.28-8) ... Setting up libc6-dev:armhf (2.28-8) ... Setting up libpvm3:armhf (3.4.6-2) ... Setting up libgcc1:armhf (1:8.3.0-6) ... Setting up libgomp1:armhf (8.3.0-6) ... Setting up dh-autoreconf (19) ... Setting up libatomic1:armhf (8.3.0-6) ... Setting up dh-strip-nondeterminism (1.1.2-1) ... Setting up libsquid1:armhf (1.9g+cvs20050121-11) ... Setting up libstdc++6:armhf (8.3.0-6) ... Setting up libsvm3:armhf (3.21+ds-1.2) ... Setting up debhelper (12.1.1) ... Setting up libsquid-dev:armhf (1.9g+cvs20050121-11) ... Setting up libasan5:armhf (8.3.0-6) ... Setting up libsvm-dev:armhf (3.21+ds-1.2) ... Setting up libubsan1:armhf (8.3.0-6) ... Setting up libgcc-8-dev:armhf (8.3.0-6) ... Setting up libstdc++-8-dev:armhf (8.3.0-6) ... Setting up sbuild-build-depends-libpsortb-dummy:armhf (0.invalid.0) ... Processing triggers for libc-bin (2.28-8) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.9.0-8-amd64 amd64 (x86_64) Toolchain package versions: binutils_2.31.1-16 dpkg-dev_1.19.6 g++-8_8.3.0-6 gcc-8_8.3.0-6 libc6-dev_2.28-8 libstdc++-8-dev_8.3.0-6 libstdc++-8-dev-armhf-cross_8.3.0-4cross1 libstdc++6_8.3.0-6 libstdc++6-armhf-cross_8.3.0-4cross1 linux-libc-dev_4.19.28-2 Package versions: adduser_3.118 apt_1.8.0 autoconf_2.69-11 automake_1:1.16.1-4 autopoint_0.19.8.1-9 autotools-dev_20180224.1 base-files_10.1 base-passwd_3.5.46 bash_5.0-3 binutils_2.31.1-16 binutils-arm-linux-gnueabihf_2.31.1-16 binutils-common_2.31.1-16 binutils-x86-64-linux-gnu_2.31.1-16 bsdmainutils_11.1.2+b1 bsdutils_1:2.33.1-0.1 build-essential_12.6 bzip2_1.0.6-9 coreutils_8.30-3 cpp_4:8.3.0-1 cpp-8_8.3.0-6 cpp-8-arm-linux-gnueabihf_8.3.0-4cross1 cpp-arm-linux-gnueabihf_4:8.3.0-1 cross-config_2.6.15-2 crossbuild-essential-armhf_12.6 d-shlibs_0.84 dash_0.5.10.2-5 debconf_1.5.71 debhelper_12.1.1 debian-archive-keyring_2018.1 debianutils_4.8.6.1 dh-autoreconf_19 dh-strip-nondeterminism_1.1.2-1 diffutils_1:3.7-3 dpkg_1.19.6 dpkg-cross_2.6.15-2 dpkg-dev_1.19.6 dwz_0.12-3 e2fsprogs_1.45.0-1 fakeroot_1.23-1 fdisk_2.33.1-0.1 file_1:5.35-4 findutils_4.6.0+git+20190209-2 g++_4:8.3.0-1 g++-8_8.3.0-6 g++-8-arm-linux-gnueabihf_8.3.0-4cross1 g++-arm-linux-gnueabihf_4:8.3.0-1 gcc_4:8.3.0-1 gcc-8_8.3.0-6 gcc-8-arm-linux-gnueabihf_8.3.0-4cross1 gcc-8-arm-linux-gnueabihf-base_8.3.0-4cross1 gcc-8-base_8.3.0-6 gcc-8-cross-base_8.3.0-4cross1 gcc-arm-linux-gnueabihf_4:8.3.0-1 gettext_0.19.8.1-9 gettext-base_0.19.8.1-9 gpgv_2.2.13-1 grep_3.3-1 groff-base_1.22.4-3 gzip_1.9-3 hostname_3.21 init-system-helpers_1.56+nmu1 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-4 libapt-pkg5.0_1.8.0 libarchive-zip-perl_1.64-1 libasan5_8.3.0-6 libasan5-armhf-cross_8.3.0-4cross1 libatomic1_8.3.0-6 libatomic1-armhf-cross_8.3.0-4cross1 libattr1_1:2.4.48-4 libaudit-common_1:2.8.4-2 libaudit1_1:2.8.4-2 libbinutils_2.31.1-16 libblkid1_2.33.1-0.1 libbsd0_0.9.1-2 libbz2-1.0_1.0.6-9 libc-bin_2.28-8 libc-dev-bin_2.28-8 libc6_2.28-8 libc6-armhf-cross_2.28-7cross1 libc6-dev_2.28-8 libc6-dev-armhf-cross_2.28-7cross1 libcap-ng0_0.7.9-2 libcc1-0_8.3.0-6 libcom-err2_1.45.0-1 libconfig-auto-perl_0.44-1 libconfig-inifiles-perl_3.000001-1 libcroco3_0.6.12-3 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.249 libdebian-dpkgcross-perl_2.6.15-2 libdpkg-perl_1.19.6 libelf1_0.176-1 libext2fs2_1.45.0-1 libfakeroot_1.23-1 libfdisk1_2.33.1-0.1 libffi6_3.2.1-9 libfile-homedir-perl_1.004-1 libfile-stripnondeterminism-perl_1.1.2-1 libfile-which-perl_1.23-1 libgcc-8-dev_8.3.0-6 libgcc-8-dev-armhf-cross_8.3.0-4cross1 libgcc1_1:8.3.0-6 libgcc1-armhf-cross_1:8.3.0-4cross1 libgcrypt20_1.8.4-5 libgdbm-compat4_1.18.1-4 libgdbm6_1.18.1-4 libglib2.0-0_2.58.3-1 libgmp10_2:6.1.2+dfsg-4 libgnutls30_3.6.7-2 libgomp1_8.3.0-6 libgomp1-armhf-cross_8.3.0-4cross1 libgpg-error0_1.35-1 libhmmer2-dev_2.3.2+dfsg-6 libhogweed4_3.4.1-1 libicu63_63.1-6 libidn2-0_2.0.5-1 libio-string-perl_1.08-3 libisl19_0.20-2 libitm1_8.3.0-6 liblocale-gettext-perl_1.07-3+b4 liblsan0_8.3.0-6 liblz4-1_1.8.3-1 liblzma5_5.2.4-1 libmagic-mgc_1:5.35-4 libmagic1_1:5.35-4 libmount1_2.33.1-0.1 libmpc3_1.1.0-1 libmpfr6_4.0.2-1 libmpx2_8.3.0-6 libncurses6_6.1+20181013-2 libncursesw6_6.1+20181013-2 libnettle6_3.4.1-1 libp11-kit0_0.23.15-2 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpcre3_2:8.39-12 libperl5.28_5.28.1-6 libpipeline1_1.5.1-2 libpvm3_3.4.6-2 libquadmath0_8.3.0-6 libseccomp2_2.3.3-4 libselinux1_2.8-1+b1 libsemanage-common_2.8-2 libsemanage1_2.8-2 libsepol1_2.8-1 libsigsegv2_2.12-2 libsmartcols1_2.33.1-0.1 libsquid-dev_1.9g+cvs20050121-11 libsquid1_1.9g+cvs20050121-11 libss2_1.45.0-1 libstdc++-8-dev_8.3.0-6 libstdc++-8-dev-armhf-cross_8.3.0-4cross1 libstdc++6_8.3.0-6 libstdc++6-armhf-cross_8.3.0-4cross1 libsvm-dev_3.21+ds-1.2 libsvm3_3.21+ds-1.2 libsystemd0_241-3 libtasn1-6_4.13-3 libtinfo6_6.1+20181013-2 libtool_2.4.6-10 libtsan0_8.3.0-6 libubsan1_8.3.0-6 libubsan1-armhf-cross_8.3.0-4cross1 libuchardet0_0.0.6-3 libudev1_241-3 libunistring2_0.9.10-1 libuuid1_2.33.1-0.1 libxml-libxml-perl_2.0134+dfsg-1 libxml-namespacesupport-perl_1.12-1 libxml-sax-base-perl_1.09-1 libxml-sax-perl_1.00+dfsg-1 libxml-simple-perl_2.25-1 libxml2_2.9.4+dfsg1-7+b3 libyaml-perl_1.27-1 libzstd1_1.3.8+dfsg-3 linux-libc-dev_4.19.28-2 linux-libc-dev-armhf-cross_4.19.20-1cross1 login_1:4.5-1.1 m4_1.4.18-2 make_4.2.1-1.2 man-db_2.8.5-2 mawk_1.3.3-17+b3 mount_2.33.1-0.1 ncurses-base_6.1+20181013-2 ncurses-bin_6.1+20181013-2 passwd_1:4.5-1.1 patch_2.7.6-3 perl_5.28.1-6 perl-base_5.28.1-6 perl-modules-5.28_5.28.1-6 pkg-config_0.29-6 po-debconf_1.0.21 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-essential-dummy_0.invalid.0 sbuild-build-depends-libpsortb-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12 sysvinit-utils_2.93-8 tar_1.30+dfsg-5 tzdata_2019a-1 ucf_3.0038+nmu1 util-linux_2.33.1-0.1 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Sat Jan 5 12:49:21 2019 UTC gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./libpsortb_1.0+dfsg-3.dsc dpkg-source: info: extracting libpsortb in /<>/libpsortb-1.0+dfsg dpkg-source: info: unpacking libpsortb_1.0+dfsg.orig.tar.xz dpkg-source: info: unpacking libpsortb_1.0+dfsg-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying use_debian_packaged_libs.patch dpkg-source: info: applying use_debian_packaged_libsvm.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.armhf DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=POSIX LOGNAME=helmut PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1003 SCHROOT_GROUP=helmut SCHROOT_SESSION_ID=unstable-amd64-sbuild-d1bb671d-8620-42da-b158-bc99f91c445c SCHROOT_UID=1003 SCHROOT_USER=helmut SHELL=/bin/sh USER=helmut dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package libpsortb dpkg-buildpackage: info: source version 1.0+dfsg-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Michael R. Crusoe dpkg-architecture: warning: specified GNU system type arm-linux-gnueabihf does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf fakeroot debian/rules clean dh clean dh_clean debian/rules build-arch dh build-arch dh_update_autotools_config -a dh_autoreconf -a libtoolize: putting auxiliary files in '.'. libtoolize: copying file './ltmain.sh' libtoolize: Consider adding 'AC_CONFIG_MACRO_DIRS([m4])' to configure.ac, libtoolize: and rerunning libtoolize and aclocal. libtoolize: Consider adding '-I m4' to ACLOCAL_AMFLAGS in Makefile.am. configure.ac:12: installing './compile' configure.ac:17: installing './config.guess' configure.ac:17: installing './config.sub' configure.ac:8: installing './install-sh' configure.ac:8: installing './missing' modhmm0.92b/Makefile.am: installing './depcomp' dh_auto_configure -a ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/arm-linux-gnueabihf --libexecdir=\${prefix}/lib/arm-linux-gnueabihf --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --host=arm-linux-gnueabihf configure: WARNING: unrecognized options: --disable-maintainer-mode configure: loading site script /etc/dpkg-cross/cross-config.armhf checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for arm-linux-gnueabihf-strip... arm-linux-gnueabihf-strip checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for arm-linux-gnueabihf-g++... arm-linux-gnueabihf-g++ checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... yes checking for suffix of object files... o checking whether we are using the GNU C++ compiler... yes checking whether arm-linux-gnueabihf-g++ accepts -g... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of arm-linux-gnueabihf-g++... none checking for arm-linux-gnueabihf-gcc... arm-linux-gnueabihf-gcc checking whether we are using the GNU C compiler... yes checking whether arm-linux-gnueabihf-gcc accepts -g... yes checking for arm-linux-gnueabihf-gcc option to accept ISO C89... none needed checking whether arm-linux-gnueabihf-gcc understands -c and -o together... yes checking dependency style of arm-linux-gnueabihf-gcc... none checking how to run the C preprocessor... arm-linux-gnueabihf-gcc -E checking whether ln -s works... yes checking whether make sets $(MAKE)... (cached) yes checking build system type... x86_64-pc-linux-gnu checking host system type... arm-unknown-linux-gnueabihf checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by arm-linux-gnueabihf-gcc... /usr/arm-linux-gnueabihf/bin/ld checking if the linker (/usr/arm-linux-gnueabihf/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/arm-linux-gnueabihf-nm -B checking the name lister (/usr/bin/arm-linux-gnueabihf-nm -B) interface... BSD nm checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-pc-linux-gnu file names to arm-unknown-linux-gnueabihf format... func_convert_file_noop checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/arm-linux-gnueabihf/bin/ld option to reload object files... -r checking for arm-linux-gnueabihf-objdump... arm-linux-gnueabihf-objdump checking how to recognize dependent libraries... pass_all checking for arm-linux-gnueabihf-dlltool... no checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for arm-linux-gnueabihf-ar... arm-linux-gnueabihf-ar checking for archiver @FILE support... @ checking for arm-linux-gnueabihf-strip... (cached) arm-linux-gnueabihf-strip checking for arm-linux-gnueabihf-ranlib... arm-linux-gnueabihf-ranlib checking command to parse /usr/bin/arm-linux-gnueabihf-nm -B output from arm-linux-gnueabihf-gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for arm-linux-gnueabihf-mt... no checking for mt... no checking if : is a manifest tool... no checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if arm-linux-gnueabihf-gcc supports -fno-rtti -fno-exceptions... no checking for arm-linux-gnueabihf-gcc option to produce PIC... -fPIC -DPIC checking if arm-linux-gnueabihf-gcc PIC flag -fPIC -DPIC works... yes checking if arm-linux-gnueabihf-gcc static flag -static works... yes checking if arm-linux-gnueabihf-gcc supports -c -o file.o... yes checking if arm-linux-gnueabihf-gcc supports -c -o file.o... (cached) yes checking whether the arm-linux-gnueabihf-gcc linker (/usr/arm-linux-gnueabihf/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking how to run the C++ preprocessor... arm-linux-gnueabihf-g++ -E checking for ld used by arm-linux-gnueabihf-g++... /usr/arm-linux-gnueabihf/bin/ld checking if the linker (/usr/arm-linux-gnueabihf/bin/ld) is GNU ld... yes checking whether the arm-linux-gnueabihf-g++ linker (/usr/arm-linux-gnueabihf/bin/ld) supports shared libraries... yes checking for arm-linux-gnueabihf-g++ option to produce PIC... -fPIC -DPIC checking if arm-linux-gnueabihf-g++ PIC flag -fPIC -DPIC works... yes checking if arm-linux-gnueabihf-g++ static flag -static works... yes checking if arm-linux-gnueabihf-g++ supports -c -o file.o... yes checking if arm-linux-gnueabihf-g++ supports -c -o file.o... (cached) yes checking whether the arm-linux-gnueabihf-g++ linker (/usr/arm-linux-gnueabihf/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for main in -lm... yes checking for ANSI C header files... (cached) yes checking float.h usability... yes checking float.h presence... yes checking for float.h... yes checking limits.h usability... yes checking limits.h presence... yes checking for limits.h... yes checking for memory.h... (cached) yes checking netinet/in.h usability... yes checking netinet/in.h presence... yes checking for netinet/in.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for unistd.h... (cached) yes checking for stdbool.h that conforms to C99... yes checking for _Bool... yes checking for an ANSI C-conforming const... yes checking for inline... inline checking for size_t... yes checking whether time.h and sys/time.h may both be included... yes checking whether struct tm is in sys/time.h or time.h... time.h checking for _LARGEFILE_SOURCE value needed for large files... no checking for stdlib.h... (cached) yes checking for GNU libc compatible malloc... (cached) yes checking for stdlib.h... (cached) yes checking for GNU libc compatible realloc... (cached) yes checking whether lstat correctly handles trailing slash... no checking whether stat accepts an empty string... yes checking for strftime... yes checking for vprintf... yes checking for _doprnt... no checking for working strtod... no checking for pow... yes checking for atexit... yes checking for floor... yes checking for memmove... yes checking for memset... yes checking for pow... (cached) yes checking for sqrt... yes checking for strchr... yes checking for strcspn... yes checking for strerror... yes checking for strpbrk... yes checking for strrchr... yes checking for strspn... yes checking for strstr... yes checking for strtol... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating svmloc/Makefile config.status: creating modhmm0.92b/Makefile config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands configure: WARNING: unrecognized options: --disable-maintainer-mode dh_auto_build -a make -j1 make[1]: Entering directory '/<>/libpsortb-1.0+dfsg' make all-recursive make[2]: Entering directory '/<>/libpsortb-1.0+dfsg' Making all in svmloc make[3]: Entering directory '/<>/libpsortb-1.0+dfsg/svmloc' /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libpsortb-1.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o binding.lo binding.cpp libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libpsortb-1.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c binding.cpp -fPIC -DPIC -o .libs/binding.o libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libpsortb-1.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c binding.cpp -o binding.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libpsortb-1.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o svmloc.lo svmloc.cpp libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libpsortb-1.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c svmloc.cpp -fPIC -DPIC -o .libs/svmloc.o libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libpsortb-1.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c svmloc.cpp -o svmloc.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<>/libpsortb-1.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -version-info 0:0:0 -lsvm -Wl,-z,relro -Wl,-z,now -o libsvmloc.la -rpath /usr/lib/arm-linux-gnueabihf binding.lo svmloc.lo -lm libtool: link: arm-linux-gnueabihf-g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc-cross/arm-linux-gnueabihf/8/../../../../arm-linux-gnueabihf/lib/crti.o /usr/lib/gcc-cross/arm-linux-gnueabihf/8/crtbeginS.o .libs/binding.o .libs/svmloc.o -lsvm -L/usr/lib/gcc-cross/arm-linux-gnueabihf/8 -L/usr/lib/gcc-cross/arm-linux-gnueabihf/8/../../../../arm-linux-gnueabihf/lib -L/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc-cross/arm-linux-gnueabihf/8/crtendS.o /usr/lib/gcc-cross/arm-linux-gnueabihf/8/../../../../arm-linux-gnueabihf/lib/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,libsvmloc.so.0 -o .libs/libsvmloc.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libsvmloc.so.0" && ln -s "libsvmloc.so.0.0.0" "libsvmloc.so.0") libtool: link: (cd ".libs" && rm -f "libsvmloc.so" && ln -s "libsvmloc.so.0.0.0" "libsvmloc.so") libtool: link: arm-linux-gnueabihf-ar cru .libs/libsvmloc.a binding.o svmloc.o arm-linux-gnueabihf-ar: `u' modifier ignored since `D' is the default (see `U') libtool: link: arm-linux-gnueabihf-ranlib .libs/libsvmloc.a libtool: link: ( cd ".libs" && rm -f "libsvmloc.la" && ln -s "../libsvmloc.la" "libsvmloc.la" ) make[3]: Leaving directory '/<>/libpsortb-1.0+dfsg/svmloc' Making all in modhmm0.92b make[3]: Entering directory '/<>/libpsortb-1.0+dfsg/modhmm0.92b' /bin/bash ../libtool --tag=CC --mode=compile arm-linux-gnueabihf-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libpsortb-1.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o core_algorithms_multialpha.lo core_algorithms_multialpha.c libtool: compile: arm-linux-gnueabihf-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libpsortb-1.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c core_algorithms_multialpha.c -fPIC -DPIC -o .libs/core_algorithms_multialpha.o core_algorithms_multialpha.c: In function 'msa_forward_multi': core_algorithms_multialpha.c:1192:87: warning: passing argument 1 of 'get_alphabet_index' from incompatible pointer type [-Wincompatible-pointer-types] a_index = get_alphabet_index((msa_seq_infop->msa_seq_1 + (c * (hmmp->a_size+1)))->query_letter, hmmp->alphabet, hmmp->a_size); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ In file included from core_algorithms_multialpha.c:7: funcs.h:136:24: note: expected 'struct letter_s *' but argument is of type 'char *' int get_alphabet_index(struct letter_s*, char*, int); ^~~~~~~~~~~~~~~~ core_algorithms_multialpha.c:1199:86: warning: passing argument 1 of 'get_alphabet_index' from incompatible pointer type [-Wincompatible-pointer-types] a_index_2 = get_alphabet_index((msa_seq_infop->msa_seq_2 + (c * (hmmp->a_size_2+1)))->query_letter, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ In file included from core_algorithms_multialpha.c:7: funcs.h:136:24: note: expected 'struct letter_s *' but argument is of type 'char *' int get_alphabet_index(struct letter_s*, char*, int); ^~~~~~~~~~~~~~~~ core_algorithms_multialpha.c:1208:86: warning: passing argument 1 of 'get_alphabet_index' from incompatible pointer type [-Wincompatible-pointer-types] a_index_3 = get_alphabet_index((msa_seq_infop->msa_seq_3 + (c * (hmmp->a_size_3+1)))->query_letter, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ In file included from core_algorithms_multialpha.c:7: funcs.h:136:24: note: expected 'struct letter_s *' but argument is of type 'char *' int get_alphabet_index(struct letter_s*, char*, int); ^~~~~~~~~~~~~~~~ core_algorithms_multialpha.c:1217:86: warning: passing argument 1 of 'get_alphabet_index' from incompatible pointer type [-Wincompatible-pointer-types] a_index_4 = get_alphabet_index((msa_seq_infop->msa_seq_4 + (c * (hmmp->a_size_4+1)))->query_letter, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ In file included from core_algorithms_multialpha.c:7: funcs.h:136:24: note: expected 'struct letter_s *' but argument is of type 'char *' int get_alphabet_index(struct letter_s*, char*, int); ^~~~~~~~~~~~~~~~ core_algorithms_multialpha.c: In function 'msa_backward_multi': core_algorithms_multialpha.c:1419:87: warning: passing argument 1 of 'get_alphabet_index' from incompatible pointer type [-Wincompatible-pointer-types] a_index = get_alphabet_index((msa_seq_infop->msa_seq_1 + (c * (hmmp->a_size+1)))->query_letter, hmmp->alphabet, hmmp->a_size); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ In file included from core_algorithms_multialpha.c:7: funcs.h:136:24: note: expected 'struct letter_s *' but argument is of type 'char *' int get_alphabet_index(struct letter_s*, char*, int); ^~~~~~~~~~~~~~~~ core_algorithms_multialpha.c:1426:86: warning: passing argument 1 of 'get_alphabet_index' from incompatible pointer type [-Wincompatible-pointer-types] a_index_2 = get_alphabet_index((msa_seq_infop->msa_seq_2 + (c * (hmmp->a_size_2+1)))->query_letter, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ In file included from core_algorithms_multialpha.c:7: funcs.h:136:24: note: expected 'struct letter_s *' but argument is of type 'char *' int get_alphabet_index(struct letter_s*, char*, int); ^~~~~~~~~~~~~~~~ core_algorithms_multialpha.c:1435:86: warning: passing argument 1 of 'get_alphabet_index' from incompatible pointer type [-Wincompatible-pointer-types] a_index_3 = get_alphabet_index((msa_seq_infop->msa_seq_3 + (c * (hmmp->a_size_3+1)))->query_letter, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ In file included from core_algorithms_multialpha.c:7: funcs.h:136:24: note: expected 'struct letter_s *' but argument is of type 'char *' int get_alphabet_index(struct letter_s*, char*, int); ^~~~~~~~~~~~~~~~ core_algorithms_multialpha.c:1444:86: warning: passing argument 1 of 'get_alphabet_index' from incompatible pointer type [-Wincompatible-pointer-types] a_index_4 = get_alphabet_index((msa_seq_infop->msa_seq_4 + (c * (hmmp->a_size_4+1)))->query_letter, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ In file included from core_algorithms_multialpha.c:7: funcs.h:136:24: note: expected 'struct letter_s *' but argument is of type 'char *' int get_alphabet_index(struct letter_s*, char*, int); ^~~~~~~~~~~~~~~~ core_algorithms_multialpha.c: In function 'msa_viterbi_multi': core_algorithms_multialpha.c:1608:87: warning: passing argument 1 of 'get_alphabet_index' from incompatible pointer type [-Wincompatible-pointer-types] a_index = get_alphabet_index((msa_seq_infop->msa_seq_1 + (c * (hmmp->a_size+1)))->query_letter, hmmp->alphabet, hmmp->a_size); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ In file included from core_algorithms_multialpha.c:7: funcs.h:136:24: note: expected 'struct letter_s *' but argument is of type 'char *' int get_alphabet_index(struct letter_s*, char*, int); ^~~~~~~~~~~~~~~~ core_algorithms_multialpha.c:1615:86: warning: passing argument 1 of 'get_alphabet_index' from incompatible pointer type [-Wincompatible-pointer-types] a_index_2 = get_alphabet_index((msa_seq_infop->msa_seq_2 + (c * (hmmp->a_size_2+1)))->query_letter, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ In file included from core_algorithms_multialpha.c:7: funcs.h:136:24: note: expected 'struct letter_s *' but argument is of type 'char *' int get_alphabet_index(struct letter_s*, char*, int); ^~~~~~~~~~~~~~~~ core_algorithms_multialpha.c:1624:86: warning: passing argument 1 of 'get_alphabet_index' from incompatible pointer type [-Wincompatible-pointer-types] a_index_3 = get_alphabet_index((msa_seq_infop->msa_seq_3 + (c * (hmmp->a_size_3+1)))->query_letter, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ In file included from core_algorithms_multialpha.c:7: funcs.h:136:24: note: expected 'struct letter_s *' but argument is of type 'char *' int get_alphabet_index(struct letter_s*, char*, int); ^~~~~~~~~~~~~~~~ core_algorithms_multialpha.c:1633:86: warning: passing argument 1 of 'get_alphabet_index' from incompatible pointer type [-Wincompatible-pointer-types] a_index_4 = get_alphabet_index((msa_seq_infop->msa_seq_4 + (c * (hmmp->a_size_4+1)))->query_letter, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ In file included from core_algorithms_multialpha.c:7: funcs.h:136:24: note: expected 'struct letter_s *' but argument is of type 'char *' int get_alphabet_index(struct letter_s*, char*, int); ^~~~~~~~~~~~~~~~ core_algorithms_multialpha.c: In function 'msa_one_best_multi': core_algorithms_multialpha.c:1892:87: warning: passing argument 1 of 'get_alphabet_index' from incompatible pointer type [-Wincompatible-pointer-types] a_index = get_alphabet_index((msa_seq_infop->msa_seq_1 + (c * (hmmp->a_size+1)))->query_letter, hmmp->alphabet, hmmp->a_size); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ In file included from core_algorithms_multialpha.c:7: funcs.h:136:24: note: expected 'struct letter_s *' but argument is of type 'char *' int get_alphabet_index(struct letter_s*, char*, int); ^~~~~~~~~~~~~~~~ core_algorithms_multialpha.c:1899:86: warning: passing argument 1 of 'get_alphabet_index' from incompatible pointer type [-Wincompatible-pointer-types] a_index_2 = get_alphabet_index((msa_seq_infop->msa_seq_2 + (c * (hmmp->a_size_2+1)))->query_letter, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ In file included from core_algorithms_multialpha.c:7: funcs.h:136:24: note: expected 'struct letter_s *' but argument is of type 'char *' int get_alphabet_index(struct letter_s*, char*, int); ^~~~~~~~~~~~~~~~ core_algorithms_multialpha.c:1908:86: warning: passing argument 1 of 'get_alphabet_index' from incompatible pointer type [-Wincompatible-pointer-types] a_index_3 = get_alphabet_index((msa_seq_infop->msa_seq_3 + (c * (hmmp->a_size_3+1)))->query_letter, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ In file included from core_algorithms_multialpha.c:7: funcs.h:136:24: note: expected 'struct letter_s *' but argument is of type 'char *' int get_alphabet_index(struct letter_s*, char*, int); ^~~~~~~~~~~~~~~~ core_algorithms_multialpha.c:1917:86: warning: passing argument 1 of 'get_alphabet_index' from incompatible pointer type [-Wincompatible-pointer-types] a_index_4 = get_alphabet_index((msa_seq_infop->msa_seq_4 + (c * (hmmp->a_size_4+1)))->query_letter, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ In file included from core_algorithms_multialpha.c:7: funcs.h:136:24: note: expected 'struct letter_s *' but argument is of type 'char *' int get_alphabet_index(struct letter_s*, char*, int); ^~~~~~~~~~~~~~~~ libtool: compile: arm-linux-gnueabihf-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libpsortb-1.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c core_algorithms_multialpha.c -o core_algorithms_multialpha.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=compile arm-linux-gnueabihf-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libpsortb-1.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o debug_funcs.lo debug_funcs.c libtool: compile: arm-linux-gnueabihf-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libpsortb-1.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c debug_funcs.c -fPIC -DPIC -o .libs/debug_funcs.o debug_funcs.c: In function 'dump_viterbi_path': debug_funcs.c:320:38: warning: implicit declaration of function 'get_mtx_index' [-Wimplicit-function-declaration] dump_viterbi_path(viterbi_mtxp + get_mtx_index(row-1, cur->prev, row_size), hmmp, ^~~~~~~~~~~~~ debug_funcs.c: In function 'dump_replacement_letters': debug_funcs.c:861:14: warning: format '%c' expects argument of type 'int', but argument 2 has type 'struct letter_s' [-Wformat=] printf("%c ", (*(replacement_letters->letters + i))); ~^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ debug_funcs.c: In function 'dump_replacement_letters_multi': debug_funcs.c:915:16: warning: format '%c' expects argument of type 'int', but argument 2 has type 'struct letter_s' [-Wformat=] printf("%c ", (*(replacement_letters->letters_1 + i))); ~^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ debug_funcs.c:918:16: warning: format '%c' expects argument of type 'int', but argument 2 has type 'struct letter_s' [-Wformat=] printf("%c ", (*(replacement_letters->letters_2 + i))); ~^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ debug_funcs.c:921:16: warning: format '%c' expects argument of type 'int', but argument 2 has type 'struct letter_s' [-Wformat=] printf("%c ", (*(replacement_letters->letters_3 + i))); ~^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ debug_funcs.c:924:16: warning: format '%c' expects argument of type 'int', but argument 2 has type 'struct letter_s' [-Wformat=] printf("%c ", (*(replacement_letters->letters_4 + i))); ~^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libtool: compile: arm-linux-gnueabihf-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libpsortb-1.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c debug_funcs.c -o debug_funcs.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=compile arm-linux-gnueabihf-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libpsortb-1.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o hmmsearch.lo hmmsearch.c libtool: compile: arm-linux-gnueabihf-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libpsortb-1.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c hmmsearch.c -fPIC -DPIC -o .libs/hmmsearch.o hmmsearch.c: In function 'get_scores': hmmsearch.c:535:19: warning: assignment to 'struct helix_site *' from incompatible pointer type 'helix_sites *' {aka 'struct *'} [-Wincompatible-pointer-types] hSites->helix = (helix_sites *) malloc(sizeof (helix_sites) * helices); ^ hmmsearch.c: In function 'get_nullmodel_score_multi': hmmsearch.c:656:35: warning: format '%s' expects argument of type 'char *', but argument 2 has type 'struct letter_s *' [-Wformat=] printf("Could not find letter %s when scoring null model\n", &seq[l]); ~^ ~~~~~~~ hmmsearch.c:674:37: warning: format '%s' expects argument of type 'char *', but argument 2 has type 'struct letter_s *' [-Wformat=] printf("Could not find letter %s when scoring null model\n", &seq_2[l]); ~^ ~~~~~~~~~ hmmsearch.c:693:37: warning: format '%s' expects argument of type 'char *', but argument 2 has type 'struct letter_s *' [-Wformat=] printf("Could not find letter %s when scoring null model\n", &seq_3[l]); ~^ ~~~~~~~~~ hmmsearch.c:712:37: warning: format '%s' expects argument of type 'char *', but argument 2 has type 'struct letter_s *' [-Wformat=] printf("Could not find letter %s when scoring null model\n", &seq[l]); ~^ ~~~~~~~ libtool: compile: arm-linux-gnueabihf-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libpsortb-1.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c hmmsearch.c -o hmmsearch.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=compile arm-linux-gnueabihf-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libpsortb-1.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o readhmm.lo readhmm.c libtool: compile: arm-linux-gnueabihf-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libpsortb-1.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c readhmm.c -fPIC -DPIC -o .libs/readhmm.o readhmm.c: In function 'readhmm': readhmm.c:121:28: warning: assignment to 'struct transition_s *' from incompatible pointer type 'int *' [-Wincompatible-pointer-types] hmmp->trans_tie_groups = (int*)(malloc_or_die((hmmp->nr_t + hmmp->nr_ttg) * sizeof(struct transition_s))); ^ readhmm.c: In function 'readanhmm': readhmm.c:397:28: warning: assignment to 'struct transition_s *' from incompatible pointer type 'int *' [-Wincompatible-pointer-types] hmmp->trans_tie_groups = (int*)(malloc_or_die((hmmp->nr_t + hmmp->nr_ttg) * sizeof(struct transition_s))); ^ readhmm.c: In function 'readhmm': readhmm.c:69:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(s, MAX_LINE, file); ^~~~~~~~~~~~~~~~~~~~~~~~ readhmm.c: In function 'readanhmm': readhmm.c:345:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(s, MAX_LINE, file); ^~~~~~~~~~~~~~~~~~~~~~~~ readhmm.c: In function 'read_module': readhmm.c:751:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(s, MAX_LINE, file); ^~~~~~~~~~~~~~~~~~~~~~~~ readhmm.c:786:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(s, MAX_LINE, file); ^~~~~~~~~~~~~~~~~~~~~~~~ readhmm.c:821:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(s, MAX_LINE, file); ^~~~~~~~~~~~~~~~~~~~~~~~ readhmm.c:850:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(s, MAX_LINE, file); ^~~~~~~~~~~~~~~~~~~~~~~~ readhmm.c:854:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(s, MAX_LINE, file); ^~~~~~~~~~~~~~~~~~~~~~~~ readhmm.c: In function 'read_prior_files': readhmm.c:1231:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(ps, 2048, priorfile); ^~~~~~~~~~~~~~~~~~~~~~~~~~ libtool: compile: arm-linux-gnueabihf-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libpsortb-1.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c readhmm.c -o readhmm.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=compile arm-linux-gnueabihf-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libpsortb-1.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o readhmm_multialpha.lo readhmm_multialpha.c libtool: compile: arm-linux-gnueabihf-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libpsortb-1.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c readhmm_multialpha.c -fPIC -DPIC -o .libs/readhmm_multialpha.o readhmm_multialpha.c: In function 'copy_hmm_struct': readhmm_multialpha.c:273:34: warning: assignment to 'struct transition_s *' from incompatible pointer type 'int *' [-Wincompatible-pointer-types] retrain_hmmp->trans_tie_groups = (int*)(malloc_or_die((hmmp->nr_t + hmmp->nr_ttg) * sizeof(struct transition_s))); ^ readhmm_multialpha.c: In function 'readhmm_multialpha': readhmm_multialpha.c:469:28: warning: assignment to 'struct transition_s *' from incompatible pointer type 'int *' [-Wincompatible-pointer-types] hmmp->trans_tie_groups = (int*)(malloc_or_die((hmmp->nr_t + hmmp->nr_ttg) * sizeof(struct transition_s))); ^ readhmm_multialpha.c:326:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(s, MAX_LINE, file); ^~~~~~~~~~~~~~~~~~~~~~~~ readhmm_multialpha.c: In function 'read_module_multi': readhmm_multialpha.c:1042:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(s, MAX_LINE, file); ^~~~~~~~~~~~~~~~~~~~~~~~ readhmm_multialpha.c:1077:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(s, MAX_LINE, file); ^~~~~~~~~~~~~~~~~~~~~~~~ readhmm_multialpha.c:1111:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(s, MAX_LINE, file); ^~~~~~~~~~~~~~~~~~~~~~~~ readhmm_multialpha.c:1140:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(s, MAX_LINE, file); ^~~~~~~~~~~~~~~~~~~~~~~~ readhmm_multialpha.c:1143:7: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(s, MAX_LINE, file); ^~~~~~~~~~~~~~~~~~~~~~~~ readhmm_multialpha.c:1169:7: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(s, MAX_LINE, file); ^~~~~~~~~~~~~~~~~~~~~~~~ readhmm_multialpha.c:1172:7: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(s, MAX_LINE, file); ^~~~~~~~~~~~~~~~~~~~~~~~ readhmm_multialpha.c:1198:7: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(s, MAX_LINE, file); ^~~~~~~~~~~~~~~~~~~~~~~~ readhmm_multialpha.c:1202:7: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(s, MAX_LINE, file); ^~~~~~~~~~~~~~~~~~~~~~~~ readhmm_multialpha.c:1229:7: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(s, MAX_LINE, file); ^~~~~~~~~~~~~~~~~~~~~~~~ readhmm_multialpha.c:1236:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(s, MAX_LINE, file); ^~~~~~~~~~~~~~~~~~~~~~~~ libtool: compile: arm-linux-gnueabihf-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libpsortb-1.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c readhmm_multialpha.c -o readhmm_multialpha.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=compile arm-linux-gnueabihf-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libpsortb-1.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o readseqs_multialpha.lo readseqs_multialpha.c libtool: compile: arm-linux-gnueabihf-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libpsortb-1.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c readseqs_multialpha.c -fPIC -DPIC -o .libs/readseqs_multialpha.o readseqs_multialpha.c: In function 'get_sequence_fasta_multi': readseqs_multialpha.c:83:39: warning: assignment to 'char' from 'char *' makes integer from pointer without a cast [-Wint-conversion] (seq_infop->seqs + seq_nr)->name[0] = "s"; ^ readseqs_multialpha.c: In function 'get_sequence_std_multi': readseqs_multialpha.c:121:55: warning: unknown escape sequence: '\s' if(line[0] == '<' || line[0] == '#' || line[0] == '\s' || line[0] == '\n' || line[0] == '/') { ^~~~ readseqs_multialpha.c: In function 'get_sequences_msa_std_multi': readseqs_multialpha.c:372:18: warning: unknown escape sequence: '\s' else if(i == '\s' && i == '\n') { ^~~~ readseqs_multialpha.c:389:22: warning: implicit declaration of function 'read_multi_prior_file_multi'; did you mean 'read_prior_file_multi'? [-Wimplicit-function-declaration] read_priorfile = read_multi_prior_file_multi(&em_di_1, hmmp, priorfile_a1, 1); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ read_prior_file_multi readseqs_multialpha.c: In function 'get_sequence_std_multi': readseqs_multialpha.c:286:7: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, MAX_LINE, seqfile); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ readseqs_multialpha.c: In function 'get_sequences_msa_std_multi': readseqs_multialpha.c:625:7: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, MAX_LINE, seqfile); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ readseqs_multialpha.c:754:2: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, MAX_LINE, seqfile); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ readseqs_multialpha.c:874:2: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, MAX_LINE, seqfile); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ readseqs_multialpha.c:995:2: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, MAX_LINE, seqfile); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libtool: compile: arm-linux-gnueabihf-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libpsortb-1.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c readseqs_multialpha.c -o readseqs_multialpha.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=compile arm-linux-gnueabihf-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libpsortb-1.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o std_calculation_funcs.lo std_calculation_funcs.c libtool: compile: arm-linux-gnueabihf-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libpsortb-1.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c std_calculation_funcs.c -fPIC -DPIC -o .libs/std_calculation_funcs.o libtool: compile: arm-linux-gnueabihf-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libpsortb-1.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c std_calculation_funcs.c -o std_calculation_funcs.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=compile arm-linux-gnueabihf-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libpsortb-1.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o std_funcs.lo std_funcs.c libtool: compile: arm-linux-gnueabihf-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libpsortb-1.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c std_funcs.c -fPIC -DPIC -o .libs/std_funcs.o std_funcs.c: In function 'get_replacement_letter_index_single': std_funcs.c:683:62: warning: comparison between pointer and integer if(((replacement_letters->letters + a_index)->letter)[0] == c) { ^~ std_funcs.c: In function 'get_reverse_msa_seq': std_funcs.c:2076:74: warning: assignment to 'int *' from 'int' makes pointer from integer without a cast [-Wint-conversion] *(reverse_msa_seq_infop->gaps + (msa_seq_infop->msa_seq_length + i)) = END; ^ std_funcs.c: In function 'get_reverse_msa_seq_multi': std_funcs.c:2184:74: warning: assignment to 'int *' from 'int' makes pointer from integer without a cast [-Wint-conversion] *(reverse_msa_seq_infop->gaps + (msa_seq_infop->msa_seq_length + i)) = END; ^ std_funcs.c: In function 'update_shares_prior_multi': std_funcs.c:2471:5: warning: 'return' with no value, in function returning non-void return; ^~~~~~ std_funcs.c:2457:5: note: declared here int update_shares_prior_multi(struct emission_dirichlet_s *em_di, struct hmm_multi_s *hmmp, ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:873, from std_funcs.c:1: In function 'fgets', inlined from 'get_nr_alphabets' at std_funcs.c:2731:10: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:263:9: warning: call to '__fgets_chk_warn' declared with attribute warning: fgets called with bigger size than length of destination buffer return __fgets_chk_warn (__s, __bos (__s), __n, __stream); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'fgets', inlined from 'get_nr_alphabets' at std_funcs.c:2738:8: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:263:9: warning: call to '__fgets_chk_warn' declared with attribute warning: fgets called with bigger size than length of destination buffer return __fgets_chk_warn (__s, __bos (__s), __n, __stream); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libtool: compile: arm-linux-gnueabihf-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libpsortb-1.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c std_funcs.c -o std_funcs.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=compile arm-linux-gnueabihf-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libpsortb-1.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o training_algorithms_multialpha.lo training_algorithms_multialpha.c libtool: compile: arm-linux-gnueabihf-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libpsortb-1.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c training_algorithms_multialpha.c -fPIC -DPIC -o .libs/training_algorithms_multialpha.o training_algorithms_multialpha.c: In function 'msa_baum_welch_dirichlet_multi': training_algorithms_multialpha.c:701:12: warning: assignment to 'int' from 'char *' makes integer from pointer without a cast [-Wint-conversion] alphabet = hmmp->alphabet; ^ training_algorithms_multialpha.c:710:12: warning: assignment to 'int' from 'char *' makes integer from pointer without a cast [-Wint-conversion] alphabet = hmmp->alphabet_2; ^ training_algorithms_multialpha.c:719:12: warning: assignment to 'int' from 'char *' makes integer from pointer without a cast [-Wint-conversion] alphabet = hmmp->alphabet_3; ^ training_algorithms_multialpha.c:728:12: warning: assignment to 'int' from 'char *' makes integer from pointer without a cast [-Wint-conversion] alphabet = hmmp->alphabet_4; ^ training_algorithms_multialpha.c: In function 'extended_msa_baum_welch_dirichlet_multi': training_algorithms_multialpha.c:1639:12: warning: assignment to 'int' from 'char *' makes integer from pointer without a cast [-Wint-conversion] alphabet = hmmp->alphabet; ^ training_algorithms_multialpha.c:1646:12: warning: assignment to 'int' from 'char *' makes integer from pointer without a cast [-Wint-conversion] alphabet = hmmp->alphabet_2; ^ training_algorithms_multialpha.c:1653:12: warning: assignment to 'int' from 'char *' makes integer from pointer without a cast [-Wint-conversion] alphabet = hmmp->alphabet_3; ^ training_algorithms_multialpha.c:1660:12: warning: assignment to 'int' from 'char *' makes integer from pointer without a cast [-Wint-conversion] alphabet = hmmp->alphabet_4; ^ training_algorithms_multialpha.c:1784:12: warning: assignment to 'int' from 'char *' makes integer from pointer without a cast [-Wint-conversion] alphabet = hmmp->alphabet; ^ training_algorithms_multialpha.c:1791:12: warning: assignment to 'int' from 'char *' makes integer from pointer without a cast [-Wint-conversion] alphabet = hmmp->alphabet_2; ^ training_algorithms_multialpha.c:1798:12: warning: assignment to 'int' from 'char *' makes integer from pointer without a cast [-Wint-conversion] alphabet = hmmp->alphabet_3; ^ training_algorithms_multialpha.c:1805:12: warning: assignment to 'int' from 'char *' makes integer from pointer without a cast [-Wint-conversion] alphabet = hmmp->alphabet_4; ^ training_algorithms_multialpha.c: In function 'add_to_E_multi': training_algorithms_multialpha.c:3564:5: warning: implicit declaration of function 'add_to_E_continuous'; did you mean 'add_to_E_multi'? [-Wimplicit-function-declaration] add_to_E_continuous(E, Eka_base, msa_seq, p, k, a_size, emissions); ^~~~~~~~~~~~~~~~~~~ add_to_E_multi training_algorithms_multialpha.c:3589:8: warning: passing argument 9 of 'add_to_E_subst_mtx_dot_product_nr_occ' makes pointer from integer without a cast [-Wint-conversion] alphabet); ^~~~~~~~ In file included from training_algorithms_multialpha.c:10: funcs.h:257:68: note: expected 'char *' but argument is of type 'int' int k, int a_size, int normalize, double *subst_mtx, char *alphabet); ~~~~~~^~~~~~~~ training_algorithms_multialpha.c:3593:7: warning: passing argument 9 of 'add_to_E_subst_mtx_dot_product_prior_nr_occ' makes pointer from integer without a cast [-Wint-conversion] alphabet); ^~~~~~~~ In file included from training_algorithms_multialpha.c:10: funcs.h:259:67: note: expected 'char *' but argument is of type 'int' int k, int a_size, int normalize, double *subst_mtx, char *alphabet); ~~~~~~^~~~~~~~ training_algorithms_multialpha.c:3618:8: warning: passing argument 9 of 'add_to_E_subst_mtx_dot_product' makes pointer from integer without a cast [-Wint-conversion] alphabet); ^~~~~~~~ In file included from training_algorithms_multialpha.c:10: funcs.h:238:68: note: expected 'char *' but argument is of type 'int' int k, int a_size, int normalize, double *subst_mtx, char *alphabet); ~~~~~~^~~~~~~~ training_algorithms_multialpha.c:3622:7: warning: passing argument 9 of 'add_to_E_subst_mtx_dot_product_prior' makes pointer from integer without a cast [-Wint-conversion] alphabet); ^~~~~~~~ In file included from training_algorithms_multialpha.c:10: funcs.h:240:67: note: expected 'char *' but argument is of type 'int' int k, int a_size, int normalize, double *subst_mtx, char *alphabet); ~~~~~~^~~~~~~~ libtool: compile: arm-linux-gnueabihf-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libpsortb-1.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c training_algorithms_multialpha.c -o training_algorithms_multialpha.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=link arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>/libpsortb-1.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -version-info 0:0:0 -Wl,-z,relro -Wl,-z,now -o libmodhmm.la -rpath /usr/lib/arm-linux-gnueabihf core_algorithms_multialpha.lo debug_funcs.lo hmmsearch.lo readhmm.lo readhmm_multialpha.lo readseqs_multialpha.lo std_calculation_funcs.lo std_funcs.lo training_algorithms_multialpha.lo -lm libtool: link: arm-linux-gnueabihf-gcc -shared -fPIC -DPIC .libs/core_algorithms_multialpha.o .libs/debug_funcs.o .libs/hmmsearch.o .libs/readhmm.o .libs/readhmm_multialpha.o .libs/readseqs_multialpha.o .libs/std_calculation_funcs.o .libs/std_funcs.o .libs/training_algorithms_multialpha.o -lm -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,libmodhmm.so.0 -o .libs/libmodhmm.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libmodhmm.so.0" && ln -s "libmodhmm.so.0.0.0" "libmodhmm.so.0") libtool: link: (cd ".libs" && rm -f "libmodhmm.so" && ln -s "libmodhmm.so.0.0.0" "libmodhmm.so") libtool: link: arm-linux-gnueabihf-ar cru .libs/libmodhmm.a core_algorithms_multialpha.o debug_funcs.o hmmsearch.o readhmm.o readhmm_multialpha.o readseqs_multialpha.o std_calculation_funcs.o std_funcs.o training_algorithms_multialpha.o arm-linux-gnueabihf-ar: `u' modifier ignored since `D' is the default (see `U') libtool: link: arm-linux-gnueabihf-ranlib .libs/libmodhmm.a libtool: link: ( cd ".libs" && rm -f "libmodhmm.la" && ln -s "../libmodhmm.la" "libmodhmm.la" ) make[3]: Leaving directory '/<>/libpsortb-1.0+dfsg/modhmm0.92b' make[3]: Entering directory '/<>/libpsortb-1.0+dfsg' make[3]: Leaving directory '/<>/libpsortb-1.0+dfsg' make[2]: Leaving directory '/<>/libpsortb-1.0+dfsg' make[1]: Leaving directory '/<>/libpsortb-1.0+dfsg' dh_auto_test -a create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh binary-arch dh_testroot -a dh_prep -a debian/rules override_dh_auto_install make[1]: Entering directory '/<>/libpsortb-1.0+dfsg' dh_auto_install make -j1 install DESTDIR=/<>/libpsortb-1.0\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no make[2]: Entering directory '/<>/libpsortb-1.0+dfsg' Making install in svmloc make[3]: Entering directory '/<>/libpsortb-1.0+dfsg/svmloc' make[4]: Entering directory '/<>/libpsortb-1.0+dfsg/svmloc' /bin/mkdir -p '/<>/libpsortb-1.0+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf' /bin/bash ../libtool --mode=install /usr/bin/install -c libsvmloc.la '/<>/libpsortb-1.0+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf' libtool: install: /usr/bin/install -c .libs/libsvmloc.so.0.0.0 /<>/libpsortb-1.0+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf/libsvmloc.so.0.0.0 libtool: install: (cd /<>/libpsortb-1.0+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libsvmloc.so.0.0.0 libsvmloc.so.0 || { rm -f libsvmloc.so.0 && ln -s libsvmloc.so.0.0.0 libsvmloc.so.0; }; }) libtool: install: (cd /<>/libpsortb-1.0+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libsvmloc.so.0.0.0 libsvmloc.so || { rm -f libsvmloc.so && ln -s libsvmloc.so.0.0.0 libsvmloc.so; }; }) libtool: install: /usr/bin/install -c .libs/libsvmloc.lai /<>/libpsortb-1.0+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf/libsvmloc.la libtool: install: /usr/bin/install -c .libs/libsvmloc.a /<>/libpsortb-1.0+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf/libsvmloc.a libtool: install: chmod 644 /<>/libpsortb-1.0+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf/libsvmloc.a libtool: install: arm-linux-gnueabihf-ranlib /<>/libpsortb-1.0+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf/libsvmloc.a libtool: warning: remember to run 'libtool --finish /usr/lib/arm-linux-gnueabihf' make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/libpsortb-1.0+dfsg/svmloc' make[3]: Leaving directory '/<>/libpsortb-1.0+dfsg/svmloc' Making install in modhmm0.92b make[3]: Entering directory '/<>/libpsortb-1.0+dfsg/modhmm0.92b' make[4]: Entering directory '/<>/libpsortb-1.0+dfsg/modhmm0.92b' /bin/mkdir -p '/<>/libpsortb-1.0+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf' /bin/bash ../libtool --mode=install /usr/bin/install -c libmodhmm.la '/<>/libpsortb-1.0+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf' libtool: install: /usr/bin/install -c .libs/libmodhmm.so.0.0.0 /<>/libpsortb-1.0+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf/libmodhmm.so.0.0.0 libtool: install: (cd /<>/libpsortb-1.0+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libmodhmm.so.0.0.0 libmodhmm.so.0 || { rm -f libmodhmm.so.0 && ln -s libmodhmm.so.0.0.0 libmodhmm.so.0; }; }) libtool: install: (cd /<>/libpsortb-1.0+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libmodhmm.so.0.0.0 libmodhmm.so || { rm -f libmodhmm.so && ln -s libmodhmm.so.0.0.0 libmodhmm.so; }; }) libtool: install: /usr/bin/install -c .libs/libmodhmm.lai /<>/libpsortb-1.0+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf/libmodhmm.la libtool: install: /usr/bin/install -c .libs/libmodhmm.a /<>/libpsortb-1.0+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf/libmodhmm.a libtool: install: chmod 644 /<>/libpsortb-1.0+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf/libmodhmm.a libtool: install: arm-linux-gnueabihf-ranlib /<>/libpsortb-1.0+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf/libmodhmm.a libtool: warning: remember to run 'libtool --finish /usr/lib/arm-linux-gnueabihf' make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/libpsortb-1.0+dfsg/modhmm0.92b' make[3]: Leaving directory '/<>/libpsortb-1.0+dfsg/modhmm0.92b' make[3]: Entering directory '/<>/libpsortb-1.0+dfsg' make[4]: Entering directory '/<>/libpsortb-1.0+dfsg' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/libpsortb-1.0+dfsg' make[3]: Leaving directory '/<>/libpsortb-1.0+dfsg' make[2]: Leaving directory '/<>/libpsortb-1.0+dfsg' d-shlibmove --commit \ --multiarch \ --devunversioned \ --exclude-la \ debian/tmp/usr/lib/*/libmodhmm.so Library package automatic movement utility set -e install -d -m 755 debian/libmodhmm-dev/usr/lib/arm-linux-gnueabihf install -d -m 755 debian/libmodhmm0/usr/lib/arm-linux-gnueabihf mv debian/tmp/usr/lib/arm-linux-gnueabihf/libmodhmm.a debian/libmodhmm-dev/usr/lib/arm-linux-gnueabihf mv debian/tmp/usr/lib/arm-linux-gnueabihf/libmodhmm.so debian/libmodhmm-dev/usr/lib/arm-linux-gnueabihf mv /<>/libpsortb-1.0+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf/libmodhmm.so.0 debian/libmodhmm0/usr/lib/arm-linux-gnueabihf mv /<>/libpsortb-1.0+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf/libmodhmm.so.0.0.0 debian/libmodhmm0/usr/lib/arm-linux-gnueabihf PKGDEV=libmodhmm-dev PKGSHL=libmodhmm0 d-shlibmove --commit \ --multiarch \ --devunversioned \ --exclude-la \ --override s/libsvm3-dev/libsvm-dev/ \ debian/tmp/usr/lib/*/libsvmloc.so Library package automatic movement utility --> libsvm-dev package exists. set -e install -d -m 755 debian/libsvmloc-dev/usr/lib/arm-linux-gnueabihf install -d -m 755 debian/libsvmloc0/usr/lib/arm-linux-gnueabihf mv debian/tmp/usr/lib/arm-linux-gnueabihf/libsvmloc.a debian/libsvmloc-dev/usr/lib/arm-linux-gnueabihf mv debian/tmp/usr/lib/arm-linux-gnueabihf/libsvmloc.so debian/libsvmloc-dev/usr/lib/arm-linux-gnueabihf mv /<>/libpsortb-1.0+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf/libsvmloc.so.0 debian/libsvmloc0/usr/lib/arm-linux-gnueabihf mv /<>/libpsortb-1.0+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf/libsvmloc.so.0.0.0 debian/libsvmloc0/usr/lib/arm-linux-gnueabihf PKGDEV=libsvmloc-dev PKGSHL=libsvmloc0 make[1]: Leaving directory '/<>/libpsortb-1.0+dfsg' dh_installdocs -a dh_installchangelogs -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/libsvmloc0/usr/lib/arm-linux-gnueabihf/libsvmloc.so.0.0.0 found in none of the libraries dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'libmodhmm0' in '../libmodhmm0_1.0+dfsg-3_armhf.deb'. dpkg-deb: building package 'libmodhmm0-dbgsym' in '../libmodhmm0-dbgsym_1.0+dfsg-3_armhf.deb'. dpkg-deb: building package 'libmodhmm-dev' in '../libmodhmm-dev_1.0+dfsg-3_armhf.deb'. dpkg-deb: building package 'libsvmloc0' in '../libsvmloc0_1.0+dfsg-3_armhf.deb'. dpkg-deb: building package 'libsvmloc0-dbgsym' in '../libsvmloc0-dbgsym_1.0+dfsg-3_armhf.deb'. dpkg-deb: building package 'libsvmloc-dev' in '../libsvmloc-dev_1.0+dfsg-3_armhf.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any >../libpsortb_1.0+dfsg-3_armhf.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2019-04-12T08:06:26Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:amd64 Filtered Build-Depends: lintian:amd64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/resolver-tHAPyQ/apt_archive/sbuild-build-depends-lintian-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-essential-dummy sbuild-build-depends-libpsortb-dummy sbuild-build-depends-lintian-dummy dpkg-scanpackages: info: Wrote 4 entries to output Packages file. Ign:1 copy:/<>/resolver-tHAPyQ/apt_archive ./ InRelease Get:2 copy:/<>/resolver-tHAPyQ/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-tHAPyQ/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-tHAPyQ/apt_archive ./ Sources [783 B] Get:5 copy:/<>/resolver-tHAPyQ/apt_archive ./ Packages [861 B] Fetched 2607 B in 0s (157 kB/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: diffstat gpg gpgconf libapt-pkg-perl libassuan0 libcapture-tiny-perl libcgi-pm-perl libclass-accessor-perl libclone-perl libdigest-hmac-perl libemail-valid-perl libexporter-tiny-perl libfile-basedir-perl libfuture-perl libhtml-parser-perl libhtml-tagset-perl libio-async-perl libio-pty-perl libio-socket-ssl-perl libipc-run-perl libipc-system-simple-perl liblist-moreutils-perl libmailtools-perl libnet-dns-perl libnet-domain-tld-perl libnet-ip-perl libnet-smtp-ssl-perl libnet-ssleay-perl libparse-debianchangelog-perl libpath-tiny-perl libreadline7 libsqlite3-0 libssl1.1 libstruct-dumb-perl libsub-name-perl libtext-levenshtein-perl libtimedate-perl libtry-tiny-perl liburi-perl libyaml-0-2 libyaml-libyaml-perl lintian netbase patchutils perl-openssl-defaults readline-common t1utils Suggested packages: libdata-dump-perl ca-certificates libhtml-template-perl libwww-perl binutils-multiarch libtext-template-perl readline-doc Recommended packages: gnupg libcgi-fast-perl libhttp-message-perl libasync-mergepoint-perl libsereal-perl libtest-fatal-perl libtest-refcount-perl libdigest-bubblebabble-perl libnet-dns-sec-perl libnet-libidn-perl libauthen-sasl-perl libunicode-utf8-perl libperlio-gzip-perl The following NEW packages will be installed: diffstat gpg gpgconf libapt-pkg-perl libassuan0 libcapture-tiny-perl libcgi-pm-perl libclass-accessor-perl libclone-perl libdigest-hmac-perl libemail-valid-perl libexporter-tiny-perl libfile-basedir-perl libfuture-perl libhtml-parser-perl libhtml-tagset-perl libio-async-perl libio-pty-perl libio-socket-ssl-perl libipc-run-perl libipc-system-simple-perl liblist-moreutils-perl libmailtools-perl libnet-dns-perl libnet-domain-tld-perl libnet-ip-perl libnet-smtp-ssl-perl libnet-ssleay-perl libparse-debianchangelog-perl libpath-tiny-perl libreadline7 libsqlite3-0 libssl1.1 libstruct-dumb-perl libsub-name-perl libtext-levenshtein-perl libtimedate-perl libtry-tiny-perl liburi-perl libyaml-0-2 libyaml-libyaml-perl lintian netbase patchutils perl-openssl-defaults readline-common sbuild-build-depends-lintian-dummy:armhf t1utils 0 upgraded, 48 newly installed, 0 to remove and 0 not upgraded. Need to get 7779 kB of archives. After this operation, 20.8 MB of additional disk space will be used. Get:1 copy:/<>/resolver-tHAPyQ/apt_archive ./ sbuild-build-depends-lintian-dummy 0.invalid.0 [852 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 netbase all 5.6 [19.4 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 readline-common all 7.0-5 [70.6 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 diffstat amd64 1.62-1 [33.4 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 libassuan0 amd64 2.5.2-1 [49.4 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 libreadline7 amd64 7.0-5 [151 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 gpgconf amd64 2.2.13-1 [512 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 libsqlite3-0 amd64 3.27.2-2 [640 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 gpg amd64 2.2.13-1 [867 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 libapt-pkg-perl amd64 0.1.34+b1 [71.2 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 libcapture-tiny-perl all 0.48-1 [26.0 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 libhtml-tagset-perl all 3.20-3 [12.7 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 liburi-perl all 1.76-1 [89.9 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 libhtml-parser-perl amd64 3.72-3+b3 [105 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libcgi-pm-perl all 4.40-1 [222 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-name-perl amd64 0.21-1+b3 [13.6 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 libclass-accessor-perl all 0.51-1 [23.2 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libclone-perl amd64 0.41-1+b1 [14.6 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 libdigest-hmac-perl all 1.03+dfsg-2 [10.6 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 libtimedate-perl all 2.3000-2 [42.2 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 libssl1.1 amd64 1.1.1b-1 [1531 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 perl-openssl-defaults amd64 3 [6782 B] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-ssleay-perl amd64 1.85-2+b1 [308 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 libio-socket-ssl-perl all 2.060-3 [207 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-smtp-ssl-perl all 1.04-1 [6184 B] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 libmailtools-perl all 2.18-1 [88.5 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-ip-perl all 1.26-2 [29.0 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-dns-perl all 1.19-1 [372 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-domain-tld-perl all 1.75-1 [33.3 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 libemail-valid-perl all 1.202-1 [23.0 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 libexporter-tiny-perl all 1.002001-1 [36.9 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 libipc-system-simple-perl all 1.25-4 [26.5 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-basedir-perl all 0.08-1 [17.7 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 libfuture-perl all 0.39-1 [74.5 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 libstruct-dumb-perl all 0.09-1 [11.1 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 libio-async-perl all 0.72-1 [262 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 libio-pty-perl amd64 1:1.08-1.1+b5 [33.7 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 libipc-run-perl all 20180523.0-1 [101 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 liblist-moreutils-perl amd64 0.416-1+b4 [64.2 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libparse-debianchangelog-perl all 1.2.0-13 [59.5 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libpath-tiny-perl all 0.108-1 [53.3 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-levenshtein-perl all 0.13-1 [11.1 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 libtry-tiny-perl all 0.30-1 [23.3 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-0-2 amd64 0.2.1-1 [47.2 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-libyaml-perl amd64 0.76+repack-1 [33.1 kB] Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 patchutils amd64 0.3.4-2 [90.4 kB] Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 t1utils amd64 1.41-3 [62.3 kB] Get:48 http://debian.oregonstate.edu/debian unstable/main amd64 lintian all 2.12.0 [1190 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 7779 kB in 0s (39.2 MB/s) Selecting previously unselected package netbase. (Reading database ... 17829 files and directories currently installed.) Preparing to unpack .../00-netbase_5.6_all.deb ... Unpacking netbase (5.6) ... Selecting previously unselected package readline-common. Preparing to unpack .../01-readline-common_7.0-5_all.deb ... Unpacking readline-common (7.0-5) ... Selecting previously unselected package diffstat. Preparing to unpack .../02-diffstat_1.62-1_amd64.deb ... Unpacking diffstat (1.62-1) ... Selecting previously unselected package libassuan0:amd64. Preparing to unpack .../03-libassuan0_2.5.2-1_amd64.deb ... Unpacking libassuan0:amd64 (2.5.2-1) ... Selecting previously unselected package libreadline7:amd64. Preparing to unpack .../04-libreadline7_7.0-5_amd64.deb ... Unpacking libreadline7:amd64 (7.0-5) ... Selecting previously unselected package gpgconf. Preparing to unpack .../05-gpgconf_2.2.13-1_amd64.deb ... Unpacking gpgconf (2.2.13-1) ... Selecting previously unselected package libsqlite3-0:amd64. Preparing to unpack .../06-libsqlite3-0_3.27.2-2_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.27.2-2) ... Selecting previously unselected package gpg. Preparing to unpack .../07-gpg_2.2.13-1_amd64.deb ... Unpacking gpg (2.2.13-1) ... Selecting previously unselected package libapt-pkg-perl. Preparing to unpack .../08-libapt-pkg-perl_0.1.34+b1_amd64.deb ... Unpacking libapt-pkg-perl (0.1.34+b1) ... Selecting previously unselected package libcapture-tiny-perl. Preparing to unpack .../09-libcapture-tiny-perl_0.48-1_all.deb ... Unpacking libcapture-tiny-perl (0.48-1) ... Selecting previously unselected package libhtml-tagset-perl. Preparing to unpack .../10-libhtml-tagset-perl_3.20-3_all.deb ... Unpacking libhtml-tagset-perl (3.20-3) ... Selecting previously unselected package liburi-perl. Preparing to unpack .../11-liburi-perl_1.76-1_all.deb ... Unpacking liburi-perl (1.76-1) ... Selecting previously unselected package libhtml-parser-perl. Preparing to unpack .../12-libhtml-parser-perl_3.72-3+b3_amd64.deb ... Unpacking libhtml-parser-perl (3.72-3+b3) ... Selecting previously unselected package libcgi-pm-perl. Preparing to unpack .../13-libcgi-pm-perl_4.40-1_all.deb ... Unpacking libcgi-pm-perl (4.40-1) ... Selecting previously unselected package libsub-name-perl. Preparing to unpack .../14-libsub-name-perl_0.21-1+b3_amd64.deb ... Unpacking libsub-name-perl (0.21-1+b3) ... Selecting previously unselected package libclass-accessor-perl. Preparing to unpack .../15-libclass-accessor-perl_0.51-1_all.deb ... Unpacking libclass-accessor-perl (0.51-1) ... Selecting previously unselected package libclone-perl. Preparing to unpack .../16-libclone-perl_0.41-1+b1_amd64.deb ... Unpacking libclone-perl (0.41-1+b1) ... Selecting previously unselected package libdigest-hmac-perl. Preparing to unpack .../17-libdigest-hmac-perl_1.03+dfsg-2_all.deb ... Unpacking libdigest-hmac-perl (1.03+dfsg-2) ... Selecting previously unselected package libtimedate-perl. Preparing to unpack .../18-libtimedate-perl_2.3000-2_all.deb ... Unpacking libtimedate-perl (2.3000-2) ... Selecting previously unselected package libssl1.1:amd64. Preparing to unpack .../19-libssl1.1_1.1.1b-1_amd64.deb ... Unpacking libssl1.1:amd64 (1.1.1b-1) ... Selecting previously unselected package perl-openssl-defaults:amd64. Preparing to unpack .../20-perl-openssl-defaults_3_amd64.deb ... Unpacking perl-openssl-defaults:amd64 (3) ... Selecting previously unselected package libnet-ssleay-perl. Preparing to unpack .../21-libnet-ssleay-perl_1.85-2+b1_amd64.deb ... Unpacking libnet-ssleay-perl (1.85-2+b1) ... Selecting previously unselected package libio-socket-ssl-perl. Preparing to unpack .../22-libio-socket-ssl-perl_2.060-3_all.deb ... Unpacking libio-socket-ssl-perl (2.060-3) ... Selecting previously unselected package libnet-smtp-ssl-perl. Preparing to unpack .../23-libnet-smtp-ssl-perl_1.04-1_all.deb ... Unpacking libnet-smtp-ssl-perl (1.04-1) ... Selecting previously unselected package libmailtools-perl. Preparing to unpack .../24-libmailtools-perl_2.18-1_all.deb ... Unpacking libmailtools-perl (2.18-1) ... Selecting previously unselected package libnet-ip-perl. Preparing to unpack .../25-libnet-ip-perl_1.26-2_all.deb ... Unpacking libnet-ip-perl (1.26-2) ... Selecting previously unselected package libnet-dns-perl. Preparing to unpack .../26-libnet-dns-perl_1.19-1_all.deb ... Unpacking libnet-dns-perl (1.19-1) ... Selecting previously unselected package libnet-domain-tld-perl. Preparing to unpack .../27-libnet-domain-tld-perl_1.75-1_all.deb ... Unpacking libnet-domain-tld-perl (1.75-1) ... Selecting previously unselected package libemail-valid-perl. Preparing to unpack .../28-libemail-valid-perl_1.202-1_all.deb ... Unpacking libemail-valid-perl (1.202-1) ... Selecting previously unselected package libexporter-tiny-perl. Preparing to unpack .../29-libexporter-tiny-perl_1.002001-1_all.deb ... Unpacking libexporter-tiny-perl (1.002001-1) ... Selecting previously unselected package libipc-system-simple-perl. Preparing to unpack .../30-libipc-system-simple-perl_1.25-4_all.deb ... Unpacking libipc-system-simple-perl (1.25-4) ... Selecting previously unselected package libfile-basedir-perl. Preparing to unpack .../31-libfile-basedir-perl_0.08-1_all.deb ... Unpacking libfile-basedir-perl (0.08-1) ... Selecting previously unselected package libfuture-perl. Preparing to unpack .../32-libfuture-perl_0.39-1_all.deb ... Unpacking libfuture-perl (0.39-1) ... Selecting previously unselected package libstruct-dumb-perl. Preparing to unpack .../33-libstruct-dumb-perl_0.09-1_all.deb ... Unpacking libstruct-dumb-perl (0.09-1) ... Selecting previously unselected package libio-async-perl. Preparing to unpack .../34-libio-async-perl_0.72-1_all.deb ... Unpacking libio-async-perl (0.72-1) ... Selecting previously unselected package libio-pty-perl. Preparing to unpack .../35-libio-pty-perl_1%3a1.08-1.1+b5_amd64.deb ... Unpacking libio-pty-perl (1:1.08-1.1+b5) ... Selecting previously unselected package libipc-run-perl. Preparing to unpack .../36-libipc-run-perl_20180523.0-1_all.deb ... Unpacking libipc-run-perl (20180523.0-1) ... Selecting previously unselected package liblist-moreutils-perl. Preparing to unpack .../37-liblist-moreutils-perl_0.416-1+b4_amd64.deb ... Unpacking liblist-moreutils-perl (0.416-1+b4) ... Selecting previously unselected package libparse-debianchangelog-perl. Preparing to unpack .../38-libparse-debianchangelog-perl_1.2.0-13_all.deb ... Unpacking libparse-debianchangelog-perl (1.2.0-13) ... Selecting previously unselected package libpath-tiny-perl. Preparing to unpack .../39-libpath-tiny-perl_0.108-1_all.deb ... Unpacking libpath-tiny-perl (0.108-1) ... Selecting previously unselected package libtext-levenshtein-perl. Preparing to unpack .../40-libtext-levenshtein-perl_0.13-1_all.deb ... Unpacking libtext-levenshtein-perl (0.13-1) ... Selecting previously unselected package libtry-tiny-perl. Preparing to unpack .../41-libtry-tiny-perl_0.30-1_all.deb ... Unpacking libtry-tiny-perl (0.30-1) ... Selecting previously unselected package libyaml-0-2:amd64. Preparing to unpack .../42-libyaml-0-2_0.2.1-1_amd64.deb ... Unpacking libyaml-0-2:amd64 (0.2.1-1) ... Selecting previously unselected package libyaml-libyaml-perl. Preparing to unpack .../43-libyaml-libyaml-perl_0.76+repack-1_amd64.deb ... Unpacking libyaml-libyaml-perl (0.76+repack-1) ... Selecting previously unselected package patchutils. Preparing to unpack .../44-patchutils_0.3.4-2_amd64.deb ... Unpacking patchutils (0.3.4-2) ... Selecting previously unselected package t1utils. Preparing to unpack .../45-t1utils_1.41-3_amd64.deb ... Unpacking t1utils (1.41-3) ... Selecting previously unselected package lintian. Preparing to unpack .../46-lintian_2.12.0_all.deb ... Unpacking lintian (2.12.0) ... Selecting previously unselected package sbuild-build-depends-lintian-dummy:armhf. Preparing to unpack .../47-sbuild-build-depends-lintian-dummy_0.invalid.0_armhf.deb ... Unpacking sbuild-build-depends-lintian-dummy:armhf (0.invalid.0) ... Setting up libapt-pkg-perl (0.1.34+b1) ... Setting up libstruct-dumb-perl (0.09-1) ... Setting up libio-pty-perl (1:1.08-1.1+b5) ... Setting up libclone-perl (0.41-1+b1) ... Setting up libyaml-0-2:amd64 (0.2.1-1) ... Setting up libssl1.1:amd64 (1.1.1b-1) ... Setting up libhtml-tagset-perl (3.20-3) ... Setting up libsqlite3-0:amd64 (3.27.2-2) ... Setting up libfuture-perl (0.39-1) ... Setting up libyaml-libyaml-perl (0.76+repack-1) ... Setting up libtry-tiny-perl (0.30-1) ... Setting up perl-openssl-defaults:amd64 (3) ... Setting up libtext-levenshtein-perl (0.13-1) ... Setting up libassuan0:amd64 (2.5.2-1) ... Setting up libio-async-perl (0.72-1) ... Setting up patchutils (0.3.4-2) ... Setting up libdigest-hmac-perl (1.03+dfsg-2) ... Setting up libipc-system-simple-perl (1.25-4) ... Setting up libnet-domain-tld-perl (1.75-1) ... Setting up t1utils (1.41-3) ... Setting up diffstat (1.62-1) ... Setting up libipc-run-perl (20180523.0-1) ... Setting up libcapture-tiny-perl (0.48-1) ... Setting up libtimedate-perl (2.3000-2) ... Setting up libsub-name-perl (0.21-1+b3) ... Setting up libpath-tiny-perl (0.108-1) ... Setting up netbase (5.6) ... Setting up libexporter-tiny-perl (1.002001-1) ... Setting up libclass-accessor-perl (0.51-1) ... Setting up libnet-ip-perl (1.26-2) ... Setting up readline-common (7.0-5) ... Setting up liburi-perl (1.76-1) ... Setting up libreadline7:amd64 (7.0-5) ... Setting up libnet-ssleay-perl (1.85-2+b1) ... Setting up libfile-basedir-perl (0.08-1) ... Setting up liblist-moreutils-perl (0.416-1+b4) ... Setting up libnet-dns-perl (1.19-1) ... Setting up libhtml-parser-perl (3.72-3+b3) ... Setting up gpgconf (2.2.13-1) ... Setting up libio-socket-ssl-perl (2.060-3) ... Setting up gpg (2.2.13-1) ... Setting up libcgi-pm-perl (4.40-1) ... Setting up libnet-smtp-ssl-perl (1.04-1) ... Setting up libmailtools-perl (2.18-1) ... Setting up libparse-debianchangelog-perl (1.2.0-13) ... Setting up libemail-valid-perl (1.202-1) ... Setting up lintian (2.12.0) ... Setting up sbuild-build-depends-lintian-dummy:armhf (0.invalid.0) ... Processing triggers for man-db (2.8.5-2) ... Not building database; man-db/auto-update is not 'true'. Processing triggers for libc-bin (2.28-8) ... I: Lintian run was successful. +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ libpsortb_1.0+dfsg-3_armhf.changes: ----------------------------------- Format: 1.8 Date: Sat, 05 Jan 2019 04:48:35 -0800 Source: libpsortb Binary: libmodhmm-dev libmodhmm0 libmodhmm0-dbgsym libsvmloc-dev libsvmloc0 libsvmloc0-dbgsym Built-For-Profiles: cross nocheck Architecture: armhf Version: 1.0+dfsg-3 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Michael R. Crusoe Description: libmodhmm-dev - library for constructing, training and scoring hidden Markov mode libmodhmm0 - library for constructing, training and scoring hidden Markov mode libsvmloc-dev - PSORTb adapted library for svm machine-learning library (dev) libsvmloc0 - PSORTb adapted library for svm machine-learning library Changes: libpsortb (1.0+dfsg-3) unstable; urgency=medium . * Team upload. * libsvmloc*: Correctly link against libsvm * Add Multi-Arch: same to all binary packages, as suggested by the Multiarch hinter. * debian/watch: http→https Checksums-Sha1: a9254b90ff0bd5c30f8438c0aaf20cbb0f3e4d32 65788 libmodhmm-dev_1.0+dfsg-3_armhf.deb 999963bd14287aacbacec839af0d89fd120fc70a 230580 libmodhmm0-dbgsym_1.0+dfsg-3_armhf.deb 10e05314f532a94ca16812bcbf435e9792f39701 63912 libmodhmm0_1.0+dfsg-3_armhf.deb 9bd5379cc9fb956ebb431835900f0b045689f0e9 6192 libpsortb_1.0+dfsg-3_armhf.buildinfo 2a7dd693bb7c945f76baf96e0066cb09115672d3 10704 libsvmloc-dev_1.0+dfsg-3_armhf.deb 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libmodhmm-dev_1.0+dfsg-3_armhf.deb bbf6f18ad6c8a12c0cfa9829e5109ddb7c9f10ed80565540c66f7a49932aa1c1 230580 libmodhmm0-dbgsym_1.0+dfsg-3_armhf.deb d5b12d37115e2509930a873a693e0ce8a3bcf8056b0baa81b9619c4628acd9ae 63912 libmodhmm0_1.0+dfsg-3_armhf.deb 7a0af1d54214e03977dd52cb3e1a99f3b7b0d65f5317fa30c76bf8bc3ef52ee9 10704 libsvmloc-dev_1.0+dfsg-3_armhf.deb ff180afd94b4e537642ac6a0a14644b85957b52619405b75dfec3f3a914169d1 100076 libsvmloc0-dbgsym_1.0+dfsg-3_armhf.deb a2dc4acebd8b9161eaadb55c11a6a61aa4164e6945dbab6f2525a0ccc55a7fc3 11132 libsvmloc0_1.0+dfsg-3_armhf.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Fri, 12 Apr 2019 08:06:25 +0000 Build-Path: /<>/libpsortb-1.0+dfsg Installed-Build-Depends: adduser (= 3.118), apt (= 1.8.0), autoconf (= 2.69-11), automake (= 1:1.16.1-4), autopoint (= 0.19.8.1-9), autotools-dev (= 20180224.1), base-files (= 10.1), base-passwd (= 3.5.46), bash (= 5.0-3), binutils (= 2.31.1-16), binutils-common (= 2.31.1-16), binutils-x86-64-linux-gnu (= 2.31.1-16), bsdmainutils (= 11.1.2+b1), bsdutils (= 1:2.33.1-0.1), build-essential (= 12.6), bzip2 (= 1.0.6-9), coreutils (= 8.30-3), cpp (= 4:8.3.0-1), cpp-8 (= 8.3.0-6), d-shlibs (= 0.84), dash (= 0.5.10.2-5), debconf (= 1.5.71), debhelper (= 12.1.1), debian-archive-keyring (= 2018.1), debianutils (= 4.8.6.1), dh-autoreconf (= 19), dh-strip-nondeterminism (= 1.1.2-1), diffutils (= 1:3.7-3), dpkg (= 1.19.6), dpkg-dev (= 1.19.6), dwz (= 0.12-3), fdisk (= 2.33.1-0.1), file (= 1:5.35-4), findutils (= 4.6.0+git+20190209-2), g++ (= 4:8.3.0-1), g++-8 (= 8.3.0-6), gcc (= 4:8.3.0-1), gcc-8 (= 8.3.0-6), gcc-8-base (= 8.3.0-6), gettext (= 0.19.8.1-9), gettext-base (= 0.19.8.1-9), gpgv (= 2.2.13-1), grep (= 3.3-1), groff-base (= 1.22.4-3), gzip (= 1.9-3), hostname (= 3.21), init-system-helpers (= 1.56+nmu1), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.2.53-4), libapt-pkg5.0 (= 1.8.0), libarchive-zip-perl (= 1.64-1), libasan5 (= 8.3.0-6), libatomic1 (= 8.3.0-6), libattr1 (= 1:2.4.48-4), libaudit-common (= 1:2.8.4-2), libaudit1 (= 1:2.8.4-2), libbinutils (= 2.31.1-16), libblkid1 (= 2.33.1-0.1), libbsd0 (= 0.9.1-2), libbz2-1.0 (= 1.0.6-9), libc-bin (= 2.28-8), libc-dev-bin (= 2.28-8), libc6 (= 2.28-8), libc6-dev (= 2.28-8), libcap-ng0 (= 0.7.9-2), libcc1-0 (= 8.3.0-6), libcroco3 (= 0.6.12-3), libdb5.3 (= 5.3.28+dfsg1-0.6), libdebconfclient0 (= 0.249), libdpkg-perl (= 1.19.6), libelf1 (= 0.176-1), libfdisk1 (= 2.33.1-0.1), libffi6 (= 3.2.1-9), libfile-stripnondeterminism-perl (= 1.1.2-1), libgcc-8-dev (= 8.3.0-6), libgcc1 (= 1:8.3.0-6), libgcrypt20 (= 1.8.4-5), libgdbm-compat4 (= 1.18.1-4), libgdbm6 (= 1.18.1-4), libglib2.0-0 (= 2.58.3-1), libgmp10 (= 2:6.1.2+dfsg-4), libgnutls30 (= 3.6.7-2), libgomp1 (= 8.3.0-6), libgpg-error0 (= 1.35-1), libhmmer2-dev (= 2.3.2+dfsg-6), libhogweed4 (= 3.4.1-1), libicu63 (= 63.1-6), libidn2-0 (= 2.0.5-1), libisl19 (= 0.20-2), libitm1 (= 8.3.0-6), liblsan0 (= 8.3.0-6), liblz4-1 (= 1.8.3-1), liblzma5 (= 5.2.4-1), libmagic-mgc (= 1:5.35-4), libmagic1 (= 1:5.35-4), libmount1 (= 2.33.1-0.1), libmpc3 (= 1.1.0-1), libmpfr6 (= 4.0.2-1), libmpx2 (= 8.3.0-6), libncurses6 (= 6.1+20181013-2), libncursesw6 (= 6.1+20181013-2), libnettle6 (= 3.4.1-1), libp11-kit0 (= 0.23.15-2), libpam-modules (= 1.3.1-5), libpam-modules-bin (= 1.3.1-5), libpam-runtime (= 1.3.1-5), libpam0g (= 1.3.1-5), libpcre3 (= 2:8.39-12), libperl5.28 (= 5.28.1-6), libpipeline1 (= 1.5.1-2), libpvm3 (= 3.4.6-2), libquadmath0 (= 8.3.0-6), libseccomp2 (= 2.3.3-4), libselinux1 (= 2.8-1+b1), libsemanage-common (= 2.8-2), libsemanage1 (= 2.8-2), libsepol1 (= 2.8-1), libsigsegv2 (= 2.12-2), libsmartcols1 (= 2.33.1-0.1), libsquid-dev (= 1.9g+cvs20050121-11), libsquid1 (= 1.9g+cvs20050121-11), libstdc++-8-dev (= 8.3.0-6), libstdc++6 (= 8.3.0-6), libsvm-dev (= 3.21+ds-1.2), libsvm3 (= 3.21+ds-1.2), libsystemd0 (= 241-3), libtasn1-6 (= 4.13-3), libtinfo6 (= 6.1+20181013-2), libtool (= 2.4.6-10), libtsan0 (= 8.3.0-6), libubsan1 (= 8.3.0-6), libuchardet0 (= 0.0.6-3), libudev1 (= 241-3), libunistring2 (= 0.9.10-1), libuuid1 (= 2.33.1-0.1), libxml2 (= 2.9.4+dfsg1-7+b3), libzstd1 (= 1.3.8+dfsg-3), linux-libc-dev (= 4.19.28-2), login (= 1:4.5-1.1), m4 (= 1.4.18-2), make (= 4.2.1-1.2), man-db (= 2.8.5-2), mawk (= 1.3.3-17+b3), ncurses-base (= 6.1+20181013-2), ncurses-bin (= 6.1+20181013-2), passwd (= 1:4.5-1.1), patch (= 2.7.6-3), perl (= 5.28.1-6), perl-base (= 5.28.1-6), perl-modules-5.28 (= 5.28.1-6), pkg-config (= 0.29-6), po-debconf (= 1.0.21), sed (= 4.7-1), sensible-utils (= 0.0.12), sysvinit-utils (= 2.93-8), tar (= 1.30+dfsg-5), util-linux (= 2.33.1-0.1), xz-utils (= 5.2.4-1), zlib1g (= 1:1.2.11.dfsg-1) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="en_US.UTF-8" LC_ALL="POSIX" SOURCE_DATE_EPOCH="1546692515" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ libmodhmm-dev_1.0+dfsg-3_armhf.deb ---------------------------------- new Debian package, version 2.0. size 65788 bytes: control archive=992 bytes. 1027 bytes, 24 lines control 303 bytes, 4 lines md5sums Package: libmodhmm-dev Source: libpsortb Version: 1.0+dfsg-3 Architecture: armhf Maintainer: Debian Med Packaging Team Installed-Size: 196 Depends: libmodhmm0 (= 1.0+dfsg-3) Section: libdevel Priority: optional Multi-Arch: same Homepage: http://www.psort.org/ Description: library for constructing, training and scoring hidden Markov models (dev) Library for constructing, training and scoring hidden Markov models. It is provided with PSORTb but might be used separately. . PSORTb enables prediction of bacterial protein subcellular localization (SCL) and provides a quick and inexpensive means for gaining insight into protein function, verifying experimental results, annotating newly sequenced bacterial genomes, detecting potential cell surface/secreted drug targets, as well as identifying biomarkers for microbes. . This library needed by PSORTb is distributed separately by upstream. . This package contains the static library which is needed to link PSORTb. drwxr-xr-x root/root 0 2019-01-05 12:48 ./ drwxr-xr-x root/root 0 2019-01-05 12:48 ./usr/ drwxr-xr-x root/root 0 2019-01-05 12:48 ./usr/lib/ drwxr-xr-x root/root 0 2019-01-05 12:48 ./usr/lib/arm-linux-gnueabihf/ -rw-r--r-- root/root 187246 2019-01-05 12:48 ./usr/lib/arm-linux-gnueabihf/libmodhmm.a lrwxrwxrwx root/root 0 2019-01-05 12:48 ./usr/lib/arm-linux-gnueabihf/libmodhmm.so -> libmodhmm.so.0.0.0 drwxr-xr-x root/root 0 2019-01-05 12:48 ./usr/share/ drwxr-xr-x root/root 0 2019-01-05 12:48 ./usr/share/doc/ drwxr-xr-x root/root 0 2019-01-05 12:48 ./usr/share/doc/libmodhmm-dev/ -rw-r--r-- root/root 415 2019-01-05 12:48 ./usr/share/doc/libmodhmm-dev/changelog.Debian.gz -rw-r--r-- root/root 59 2008-08-14 16:47 ./usr/share/doc/libmodhmm-dev/changelog.gz -rw-r--r-- root/root 1416 2019-01-04 18:43 ./usr/share/doc/libmodhmm-dev/copyright libmodhmm0-dbgsym_1.0+dfsg-3_armhf.deb -------------------------------------- new Debian package, version 2.0. size 230580 bytes: control archive=560 bytes. 404 bytes, 13 lines control 106 bytes, 1 lines md5sums Package: libmodhmm0-dbgsym Source: libpsortb Version: 1.0+dfsg-3 Auto-Built-Package: debug-symbols Architecture: armhf Maintainer: Debian Med Packaging Team Installed-Size: 253 Depends: libmodhmm0 (= 1.0+dfsg-3) Section: debug Priority: optional Multi-Arch: same Description: debug symbols for libmodhmm0 Build-Ids: c34829627e286d0c7b96fec5a3312e153902d1b5 drwxr-xr-x root/root 0 2019-01-05 12:48 ./ drwxr-xr-x root/root 0 2019-01-05 12:48 ./usr/ drwxr-xr-x root/root 0 2019-01-05 12:48 ./usr/lib/ drwxr-xr-x root/root 0 2019-01-05 12:48 ./usr/lib/debug/ drwxr-xr-x root/root 0 2019-01-05 12:48 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2019-01-05 12:48 ./usr/lib/debug/.build-id/c3/ -rw-r--r-- root/root 248312 2019-01-05 12:48 ./usr/lib/debug/.build-id/c3/4829627e286d0c7b96fec5a3312e153902d1b5.debug drwxr-xr-x root/root 0 2019-01-05 12:48 ./usr/share/ drwxr-xr-x root/root 0 2019-01-05 12:48 ./usr/share/doc/ lrwxrwxrwx root/root 0 2019-01-05 12:48 ./usr/share/doc/libmodhmm0-dbgsym -> libmodhmm0 libmodhmm0_1.0+dfsg-3_armhf.deb ------------------------------- new Debian package, version 2.0. size 63912 bytes: control archive=1080 bytes. 1003 bytes, 24 lines control 301 bytes, 4 lines md5sums 23 bytes, 1 lines shlibs 67 bytes, 2 lines triggers Package: libmodhmm0 Source: libpsortb Version: 1.0+dfsg-3 Architecture: armhf Maintainer: Debian Med Packaging Team Installed-Size: 149 Depends: libc6 (>= 2.23) Section: libs Priority: optional Multi-Arch: same Homepage: http://www.psort.org/ Description: library for constructing, training and scoring hidden Markov models Library for constructing, training and scoring hidden Markov models. It is provided with PSORTb but might be used separately. . PSORTb enables prediction of bacterial protein subcellular localization (SCL) and provides a quick and inexpensive means for gaining insight into protein function, verifying experimental results, annotating newly sequenced bacterial genomes, detecting potential cell surface/secreted drug targets, as well as identifying biomarkers for microbes. . This library needed by PSORTb is distributed separately by upstream. . This package contains the shared library which is needed to run PSORTb. drwxr-xr-x root/root 0 2019-01-05 12:48 ./ drwxr-xr-x root/root 0 2019-01-05 12:48 ./usr/ drwxr-xr-x root/root 0 2019-01-05 12:48 ./usr/lib/ drwxr-xr-x root/root 0 2019-01-05 12:48 ./usr/lib/arm-linux-gnueabihf/ lrwxrwxrwx root/root 0 2019-01-05 12:48 ./usr/lib/arm-linux-gnueabihf/libmodhmm.so.0 -> libmodhmm.so.0.0.0 -rw-r--r-- root/root 136460 2019-01-05 12:48 ./usr/lib/arm-linux-gnueabihf/libmodhmm.so.0.0.0 drwxr-xr-x root/root 0 2019-01-05 12:48 ./usr/share/ drwxr-xr-x root/root 0 2019-01-05 12:48 ./usr/share/doc/ drwxr-xr-x root/root 0 2019-01-05 12:48 ./usr/share/doc/libmodhmm0/ -rw-r--r-- root/root 415 2019-01-05 12:48 ./usr/share/doc/libmodhmm0/changelog.Debian.gz -rw-r--r-- root/root 59 2008-08-14 16:47 ./usr/share/doc/libmodhmm0/changelog.gz -rw-r--r-- root/root 1416 2019-01-04 18:43 ./usr/share/doc/libmodhmm0/copyright libsvmloc-dev_1.0+dfsg-3_armhf.deb ---------------------------------- new Debian package, version 2.0. size 10704 bytes: control archive=1120 bytes. 1287 bytes, 30 lines control 303 bytes, 4 lines md5sums Package: libsvmloc-dev Source: libpsortb Version: 1.0+dfsg-3 Architecture: armhf Maintainer: Debian Med Packaging Team Installed-Size: 35 Depends: libsvmloc0 (= 1.0+dfsg-3), libsvm-dev Section: libdevel Priority: optional Multi-Arch: same Homepage: http://www.psort.org/ Description: PSORTb adapted library for svm machine-learning library (dev) Libsvm is a machine-learning library which is an easy-to-use package for support vector classification, regression and one-class SVM. It supports multi-class classification, probability outputs, and parameter selection. . PSORTb was featuring a code copy plus some local additions. This library is linked against the Debian packaged libsvn and just contains the PSORTb extensions. . PSORTb enables prediction of bacterial protein subcellular localization (SCL) and provides a quick and inexpensive means for gaining insight into protein function, verifying experimental results, annotating newly sequenced bacterial genomes, detecting potential cell surface/secreted drug targets, as well as identifying biomarkers for microbes. . This library needed by PSORTb is distributed separately by upstream. . This package contains the static library which is needed to link PSORTb. drwxr-xr-x root/root 0 2019-01-05 12:48 ./ drwxr-xr-x root/root 0 2019-01-05 12:48 ./usr/ drwxr-xr-x root/root 0 2019-01-05 12:48 ./usr/lib/ drwxr-xr-x root/root 0 2019-01-05 12:48 ./usr/lib/arm-linux-gnueabihf/ -rw-r--r-- root/root 22496 2019-01-05 12:48 ./usr/lib/arm-linux-gnueabihf/libsvmloc.a lrwxrwxrwx root/root 0 2019-01-05 12:48 ./usr/lib/arm-linux-gnueabihf/libsvmloc.so -> libsvmloc.so.0.0.0 drwxr-xr-x root/root 0 2019-01-05 12:48 ./usr/share/ drwxr-xr-x root/root 0 2019-01-05 12:48 ./usr/share/doc/ drwxr-xr-x root/root 0 2019-01-05 12:48 ./usr/share/doc/libsvmloc-dev/ -rw-r--r-- root/root 415 2019-01-05 12:48 ./usr/share/doc/libsvmloc-dev/changelog.Debian.gz -rw-r--r-- root/root 59 2008-08-14 16:47 ./usr/share/doc/libsvmloc-dev/changelog.gz -rw-r--r-- root/root 1416 2019-01-04 18:43 ./usr/share/doc/libsvmloc-dev/copyright libsvmloc0-dbgsym_1.0+dfsg-3_armhf.deb -------------------------------------- new Debian package, version 2.0. size 100076 bytes: control archive=560 bytes. 404 bytes, 13 lines control 106 bytes, 1 lines md5sums Package: libsvmloc0-dbgsym Source: libpsortb Version: 1.0+dfsg-3 Auto-Built-Package: debug-symbols Architecture: armhf Maintainer: Debian Med Packaging Team Installed-Size: 114 Depends: libsvmloc0 (= 1.0+dfsg-3) Section: debug Priority: optional Multi-Arch: same Description: debug symbols for libsvmloc0 Build-Ids: 6a6e3ecdd0ba67c7befc7efb100a5c2cc086e19f drwxr-xr-x root/root 0 2019-01-05 12:48 ./ drwxr-xr-x root/root 0 2019-01-05 12:48 ./usr/ drwxr-xr-x root/root 0 2019-01-05 12:48 ./usr/lib/ drwxr-xr-x root/root 0 2019-01-05 12:48 ./usr/lib/debug/ drwxr-xr-x root/root 0 2019-01-05 12:48 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2019-01-05 12:48 ./usr/lib/debug/.build-id/6a/ -rw-r--r-- root/root 106084 2019-01-05 12:48 ./usr/lib/debug/.build-id/6a/6e3ecdd0ba67c7befc7efb100a5c2cc086e19f.debug drwxr-xr-x root/root 0 2019-01-05 12:48 ./usr/share/ drwxr-xr-x root/root 0 2019-01-05 12:48 ./usr/share/doc/ lrwxrwxrwx root/root 0 2019-01-05 12:48 ./usr/share/doc/libsvmloc0-dbgsym -> libsvmloc0 libsvmloc0_1.0+dfsg-3_armhf.deb ------------------------------- new Debian package, version 2.0. size 11132 bytes: control archive=1240 bytes. 1299 bytes, 30 lines control 301 bytes, 4 lines md5sums 23 bytes, 1 lines shlibs 67 bytes, 2 lines triggers Package: libsvmloc0 Source: libpsortb Version: 1.0+dfsg-3 Architecture: armhf Maintainer: Debian Med Packaging Team Installed-Size: 33 Depends: libsvm3, libc6 (>= 2.4), libgcc1 (>= 1:3.5), libstdc++6 (>= 5.2) Section: libs Priority: optional Multi-Arch: same Homepage: http://www.psort.org/ Description: PSORTb adapted library for svm machine-learning library Libsvm is a machine-learning library which is an easy-to-use package for support vector classification, regression and one-class SVM. It supports multi-class classification, probability outputs, and parameter selection. . PSORTb was featuring a code copy plus some local additions. This library is linked against the Debian packaged libsvn and just contains the PSORTb extensions. . PSORTb enables prediction of bacterial protein subcellular localization (SCL) and provides a quick and inexpensive means for gaining insight into protein function, verifying experimental results, annotating newly sequenced bacterial genomes, detecting potential cell surface/secreted drug targets, as well as identifying biomarkers for microbes. . This library needed by PSORTb is distributed separately by upstream. . This package contains the shared library which is needed to run PSORb. drwxr-xr-x root/root 0 2019-01-05 12:48 ./ drwxr-xr-x root/root 0 2019-01-05 12:48 ./usr/ drwxr-xr-x root/root 0 2019-01-05 12:48 ./usr/lib/ drwxr-xr-x root/root 0 2019-01-05 12:48 ./usr/lib/arm-linux-gnueabihf/ lrwxrwxrwx root/root 0 2019-01-05 12:48 ./usr/lib/arm-linux-gnueabihf/libsvmloc.so.0 -> libsvmloc.so.0.0.0 -rw-r--r-- root/root 17772 2019-01-05 12:48 ./usr/lib/arm-linux-gnueabihf/libsvmloc.so.0.0.0 drwxr-xr-x root/root 0 2019-01-05 12:48 ./usr/share/ drwxr-xr-x root/root 0 2019-01-05 12:48 ./usr/share/doc/ drwxr-xr-x root/root 0 2019-01-05 12:48 ./usr/share/doc/libsvmloc0/ -rw-r--r-- root/root 415 2019-01-05 12:48 ./usr/share/doc/libsvmloc0/changelog.Debian.gz -rw-r--r-- root/root 59 2008-08-14 16:47 ./usr/share/doc/libsvmloc0/changelog.gz -rw-r--r-- root/root 1416 2019-01-04 18:43 ./usr/share/doc/libsvmloc0/copyright +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 11124 Build-Time: 41 Distribution: unstable Foreign Architectures: armhf Host Architecture: armhf Install-Time: 20 Job: libpsortb_1.0+dfsg-3 Lintian: pass Machine Architecture: amd64 Package: libpsortb Package-Time: 72 Source-Version: 1.0+dfsg-3 Space: 11124 Status: successful Version: 1.0+dfsg-3 -------------------------------------------------------------------------------- Finished at 2019-04-12T08:06:26Z Build needed 00:01:12, 11124k disk space