sbuild (Debian sbuild) 0.78.1 (09 February 2019) on gcc131.bak.milne.osuosl.org +==============================================================================+ | libpsortb 1.0+dfsg-3 (s390x) Sat, 28 Nov 2020 20:49:51 +0000 | +==============================================================================+ Package: libpsortb Version: 1.0+dfsg-3 Source Version: 1.0+dfsg-3 Distribution: unstable Machine Architecture: amd64 Host Architecture: s390x Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/unstable-amd64-sbuild-899ccd75-81df-4c83-b744-36017a922faa' with '<>' I: NOTICE: Log filtering will replace 'build/libpsortb-NRRrd4/resolver-TofvQf' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://debian.oregonstate.edu/debian unstable InRelease [146 kB] Get:2 http://debian.oregonstate.edu/debian unstable/main Sources.diff/Index [37.0 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 Packages.diff/Index [37.0 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main Sources 2020-11-28-0816.45.pdiff [5023 B] Get:5 http://debian.oregonstate.edu/debian unstable/main Sources 2020-11-28-1416.25.pdiff [13.7 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main Sources 2020-11-28-1416.25.pdiff [13.7 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2020-11-28-0816.45.pdiff [11.1 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2020-11-28-1416.25.pdiff [11.1 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2020-11-28-1416.25.pdiff [11.1 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main s390x Packages [8194 kB] Fetched 8455 kB in 2s (5299 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: linux-libc-dev 1 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 1230 kB of archives. After this operation, 4096 B of additional disk space will be used. Get:1 http://debian.oregonstate.edu/debian unstable/main amd64 linux-libc-dev amd64 5.9.11-1 [1230 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 1230 kB in 0s (55.2 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10514 files and directories currently installed.) Preparing to unpack .../linux-libc-dev_5.9.11-1_amd64.deb ... Unpacking linux-libc-dev:amd64 (5.9.11-1) over (5.9.9-1) ... Setting up linux-libc-dev:amd64 (5.9.11-1) ... +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'libpsortb' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/libpsortb.git Please use: git clone https://salsa.debian.org/med-team/libpsortb.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 103 kB of source archives. Get:1 http://debian.oregonstate.edu/debian unstable/main libpsortb 1.0+dfsg-3 (dsc) [2157 B] Get:2 http://debian.oregonstate.edu/debian unstable/main libpsortb 1.0+dfsg-3 (tar) [95.6 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main libpsortb 1.0+dfsg-3 (diff) [4956 B] Fetched 103 kB in 0s (2548 kB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/libpsortb-NRRrd4/libpsortb-1.0+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/libpsortb-NRRrd4' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper (>= 11~), d-shlibs, libsvm-dev, libsquid-dev, libhmmer2-dev, pkg-config, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-s390x:amd64, libc-dev:s390x, libstdc++-dev:s390x Filtered Build-Depends: debhelper (>= 11~), d-shlibs, libsvm-dev, libsquid-dev, libhmmer2-dev, pkg-config, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-s390x:amd64, libc-dev:s390x, libstdc++-dev:s390x dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [433 B] Get:5 copy:/<>/apt_archive ./ Packages [522 B] Fetched 1912 B in 0s (78.8 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-s390x-linux-gnu bsdextrautils build-essential cpp-10-s390x-linux-gnu cpp-s390x-linux-gnu cross-config crossbuild-essential-s390x d-shlibs debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dpkg-dev dwz file g++ g++-10 g++-10-s390x-linux-gnu g++-s390x-linux-gnu gcc-10-base:s390x gcc-10-cross-base gcc-10-s390x-linux-gnu gcc-10-s390x-linux-gnu-base gcc-9-base:s390x gcc-s390x-linux-gnu gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan5:s390x libasan6-s390x-cross libatomic1:s390x libatomic1-s390x-cross libc6:s390x libc6-dev libc6-dev:s390x libc6-dev-s390x-cross libc6-s390x-cross libcom-err2:s390x libconfig-auto-perl libconfig-inifiles-perl libcroco3 libcrypt-dev libcrypt-dev:s390x libcrypt1:s390x libdebhelper-perl libdebian-dpkgcross-perl libdpkg-perl libelf1 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-10-dev-s390x-cross libgcc-9-dev:s390x libgcc-s1:s390x libgcc-s1-s390x-cross libglib2.0-0 libgomp1:s390x libgomp1-s390x-cross libgssapi-krb5-2:s390x libhmmer2-dev:s390x libicu67 libio-string-perl libitm1:s390x libitm1-s390x-cross libk5crypto3:s390x libkeyutils1:s390x libkrb5-3:s390x libkrb5support0:s390x liblocale-gettext-perl libmagic-mgc libmagic1 libnsl-dev libnsl-dev:s390x libnsl2:s390x libnss-nis:s390x libnss-nisplus:s390x libperl5.32 libpipeline1 libsigsegv2 libsquid-dev:s390x libsquid1:s390x libssl1.1:s390x libstdc++-10-dev libstdc++-10-dev-s390x-cross libstdc++-9-dev:s390x libstdc++6:s390x libstdc++6-s390x-cross libsub-override-perl libsvm-dev:s390x libsvm3:s390x libtirpc-dev libtirpc-dev:s390x libtirpc3:s390x libtool libubsan1:s390x libubsan1-s390x-cross libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:s390x linux-libc-dev-s390x-cross m4 man-db perl perl-modules-5.32 pkg-config po-debconf sensible-utils ucf Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc gcc-10-locales cpp-doc dh-make binutils-multiarch debian-keyring g++-multilib g++-10-multilib gcc-10-doc g++-10-multilib-s390x-linux-gnu gcc-10-multilib-s390x-linux-gnu manpages-dev flex bison gdb-s390x-linux-gnu gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff glibc-doc:s390x libc-l10n:s390x locales:s390x glibc-doc manpages-dev:s390x gnupg git bzr krb5-doc:s390x krb5-user:s390x biosquid:s390x libstdc++-10-doc libstdc++-9-doc:s390x libtool-doc gfortran | fortran95-compiler gcj-jdk libyaml-shell-perl m4-doc apparmor less www-browser perl-doc libterm-readline-gnu-perl | libterm-readline-perl-perl libtap-harness-archive-perl libmail-box-perl Recommended packages: gnupg libalgorithm-merge-perl curl | wget | lynx libidn2-0:s390x libfile-fcntllock-perl libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs krb5-locales:s390x libltdl-dev libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl netbase libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-s390x-linux-gnu bsdextrautils build-essential cpp-10-s390x-linux-gnu cpp-s390x-linux-gnu cross-config crossbuild-essential-s390x d-shlibs debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dpkg-dev dwz file g++ g++-10 g++-10-s390x-linux-gnu g++-s390x-linux-gnu gcc-10-base:s390x gcc-10-cross-base gcc-10-s390x-linux-gnu gcc-10-s390x-linux-gnu-base gcc-9-base:s390x gcc-s390x-linux-gnu gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan5:s390x libasan6-s390x-cross libatomic1:s390x libatomic1-s390x-cross libc6:s390x libc6-dev libc6-dev:s390x libc6-dev-s390x-cross libc6-s390x-cross libcom-err2:s390x libconfig-auto-perl libconfig-inifiles-perl libcroco3 libcrypt-dev libcrypt-dev:s390x libcrypt1:s390x libdebhelper-perl libdebian-dpkgcross-perl libdpkg-perl libelf1 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-10-dev-s390x-cross libgcc-9-dev:s390x libgcc-s1:s390x libgcc-s1-s390x-cross libglib2.0-0 libgomp1:s390x libgomp1-s390x-cross libgssapi-krb5-2:s390x libhmmer2-dev:s390x libicu67 libio-string-perl libitm1:s390x libitm1-s390x-cross libk5crypto3:s390x libkeyutils1:s390x libkrb5-3:s390x libkrb5support0:s390x liblocale-gettext-perl libmagic-mgc libmagic1 libnsl-dev libnsl-dev:s390x libnsl2:s390x libnss-nis:s390x libnss-nisplus:s390x libperl5.32 libpipeline1 libsigsegv2 libsquid-dev:s390x libsquid1:s390x libssl1.1:s390x libstdc++-10-dev libstdc++-10-dev-s390x-cross libstdc++-9-dev:s390x libstdc++6:s390x libstdc++6-s390x-cross libsub-override-perl libsvm-dev:s390x libsvm3:s390x libtirpc-dev libtirpc-dev:s390x libtirpc3:s390x libtool libubsan1:s390x libubsan1-s390x-cross libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:s390x linux-libc-dev-s390x-cross m4 man-db perl perl-modules-5.32 pkg-config po-debconf sbuild-build-depends-main-dummy:s390x sensible-utils ucf 0 upgraded, 121 newly installed, 0 to remove and 0 not upgraded. Need to get 235 MB of archives. After this operation, 1006 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [944 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 bsdextrautils amd64 2.36.1-2 [140 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 groff-base amd64 1.22.4-5 [920 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 libpipeline1 amd64 1.5.3-1 [34.3 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 man-db amd64 2.9.3-2 [1314 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 perl-modules-5.32 all 5.32.0-5 [2821 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 libperl5.32 amd64 5.32.0-5 [4119 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 perl amd64 5.32.0-5 [293 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-4+b1 [19.0 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main s390x gcc-10-base s390x 10.2.0-19 [200 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main s390x gcc-9-base s390x 9.3.0-19 [198 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 sensible-utils all 0.0.12+nmu1 [16.0 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic-mgc amd64 1:5.39-3 [273 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic1 amd64 1:5.39-3 [126 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 file amd64 1:5.39-3 [69.1 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 gettext-base amd64 0.19.8.1-10 [123 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 ucf all 3.0043 [74.0 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 m4 amd64 1.4.18-4 [203 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 autoconf all 2.69-11.1 [341 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 automake all 1:1.16.2-4 [801 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 autopoint all 0.19.8.1-10 [435 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 binutils-s390x-linux-gnu amd64 2.35.1-3 [1982 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 libcrypt-dev amd64 1:4.4.17-1 [104 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 libtirpc-dev amd64 1.2.6-3 [190 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 libnsl-dev amd64 1.3.0-2 [66.4 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev amd64 2.31-4 [2344 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-10-dev amd64 10.2.0-19 [1741 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 g++-10 amd64 10.2.0-19 [44.7 MB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 g++ amd64 4:10.2.0-1 [1644 B] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 libdpkg-perl all 1.20.5 [1473 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-dev all 1.20.5 [1909 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 build-essential amd64 12.8 [7640 B] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-10-s390x-linux-gnu-base amd64 10.2.0-19cross1 [200 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-10-s390x-linux-gnu amd64 10.2.0-19cross1 [41.1 MB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-s390x-linux-gnu amd64 4:10.2.0-1 [16.8 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 cross-config all 2.6.15-3.1 [39.9 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-10-cross-base all 10.2.0-19cross1 [197 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-s390x-cross all 2.31-1cross2 [1254 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-s1-s390x-cross all 10.2.0-19cross1 [24.7 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 libgomp1-s390x-cross all 10.2.0-19cross1 [90.5 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 libitm1-s390x-cross all 10.2.0-19cross1 [24.9 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 libatomic1-s390x-cross all 10.2.0-19cross1 [7952 B] Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 libasan6-s390x-cross all 10.2.0-19cross1 [293 kB] Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++6-s390x-cross all 10.2.0-19cross1 [442 kB] Get:48 http://debian.oregonstate.edu/debian unstable/main amd64 libubsan1-s390x-cross all 10.2.0-19cross1 [124 kB] Get:49 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-10-dev-s390x-cross all 10.2.0-19cross1 [661 kB] Get:50 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-10-s390x-linux-gnu amd64 10.2.0-19cross1 [46.3 MB] Get:51 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-s390x-linux-gnu amd64 4:10.2.0-1 [1452 B] Get:52 http://debian.oregonstate.edu/debian unstable/main amd64 linux-libc-dev-s390x-cross all 5.7.6-1cross2 [1228 kB] Get:53 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev-s390x-cross all 2.31-1cross2 [1990 kB] Get:54 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-10-dev-s390x-cross all 10.2.0-19cross1 [1684 kB] Get:55 http://debian.oregonstate.edu/debian unstable/main amd64 g++-10-s390x-linux-gnu amd64 10.2.0-19cross1 [44.1 MB] Get:56 http://debian.oregonstate.edu/debian unstable/main amd64 g++-s390x-linux-gnu amd64 4:10.2.0-1 [1176 B] Get:57 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-inifiles-perl all 3.000003-1 [52.1 kB] Get:58 http://debian.oregonstate.edu/debian unstable/main amd64 libio-string-perl all 1.08-3 [12.3 kB] Get:59 http://debian.oregonstate.edu/debian unstable/main amd64 libicu67 amd64 67.1-4 [8624 kB] Get:60 http://debian.oregonstate.edu/debian unstable/main amd64 libxml2 amd64 2.9.10+dfsg-6.2 [692 kB] Get:61 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-1 [14.8 kB] Get:62 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-base-perl all 1.09-1 [20.4 kB] Get:63 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-perl all 1.02+dfsg-1 [59.0 kB] Get:64 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-libxml-perl amd64 2.0134+dfsg-2+b1 [337 kB] Get:65 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-simple-perl all 2.25-1 [72.0 kB] Get:66 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-perl all 1.30-1 [67.7 kB] Get:67 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-auto-perl all 0.44-1 [19.5 kB] Get:68 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-which-perl all 1.23-1 [16.6 kB] Get:69 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-homedir-perl all 1.006-1 [43.8 kB] Get:70 http://debian.oregonstate.edu/debian unstable/main amd64 libdebian-dpkgcross-perl all 2.6.15-3.1 [38.9 kB] Get:71 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-cross all 2.6.15-3.1 [49.9 kB] Get:72 http://debian.oregonstate.edu/debian unstable/main amd64 crossbuild-essential-s390x all 12.8 [6636 B] Get:73 http://debian.oregonstate.edu/debian unstable/main amd64 d-shlibs all 0.95 [17.8 kB] Get:74 http://debian.oregonstate.edu/debian unstable/main amd64 libtool all 2.4.6-14 [513 kB] Get:75 http://debian.oregonstate.edu/debian unstable/main amd64 dh-autoreconf all 19 [16.9 kB] Get:76 http://debian.oregonstate.edu/debian unstable/main amd64 libdebhelper-perl all 13.2.1 [188 kB] Get:77 http://debian.oregonstate.edu/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:78 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-override-perl all 0.09-2 [10.2 kB] Get:79 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.9.0-1 [25.5 kB] Get:80 http://debian.oregonstate.edu/debian unstable/main amd64 dh-strip-nondeterminism all 1.9.0-1 [15.2 kB] Get:81 http://debian.oregonstate.edu/debian unstable/main amd64 libelf1 amd64 0.182-1 [166 kB] Get:82 http://debian.oregonstate.edu/debian unstable/main amd64 dwz amd64 0.13-5 [151 kB] Get:83 http://debian.oregonstate.edu/debian unstable/main amd64 libglib2.0-0 amd64 2.66.3-1 [1364 kB] Get:84 http://debian.oregonstate.edu/debian unstable/main amd64 libcroco3 amd64 0.6.13-1 [146 kB] Get:85 http://debian.oregonstate.edu/debian unstable/main amd64 gettext amd64 0.19.8.1-10 [1303 kB] Get:86 http://debian.oregonstate.edu/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get:87 http://debian.oregonstate.edu/debian unstable/main amd64 po-debconf all 1.0.21 [248 kB] Get:88 http://debian.oregonstate.edu/debian unstable/main amd64 debhelper all 13.2.1 [1007 kB] Get:89 http://debian.oregonstate.edu/debian unstable/main s390x libgcc-s1 s390x 10.2.0-19 [24.6 kB] Get:90 http://debian.oregonstate.edu/debian unstable/main s390x libcrypt1 s390x 1:4.4.17-1 [87.3 kB] Get:91 http://debian.oregonstate.edu/debian unstable/main s390x libcom-err2 s390x 1.45.6-1 [71.6 kB] Get:92 http://debian.oregonstate.edu/debian unstable/main s390x libkrb5support0 s390x 1.18.3-4 [64.3 kB] Get:93 http://debian.oregonstate.edu/debian unstable/main s390x libk5crypto3 s390x 1.18.3-4 [112 kB] Get:94 http://debian.oregonstate.edu/debian unstable/main s390x libkeyutils1 s390x 1.6.1-2 [15.2 kB] Get:95 http://debian.oregonstate.edu/debian unstable/main s390x libssl1.1 s390x 1.1.1h-1 [1210 kB] Get:96 http://debian.oregonstate.edu/debian unstable/main s390x libkrb5-3 s390x 1.18.3-4 [340 kB] Get:97 http://debian.oregonstate.edu/debian unstable/main s390x libgssapi-krb5-2 s390x 1.18.3-4 [153 kB] Get:98 http://debian.oregonstate.edu/debian unstable/main s390x libtirpc3 s390x 1.2.6-3 [77.5 kB] Get:99 http://debian.oregonstate.edu/debian unstable/main s390x libnsl2 s390x 1.3.0-2 [37.3 kB] Get:100 http://debian.oregonstate.edu/debian unstable/main s390x libnss-nis s390x 3.1-4 [23.8 kB] Get:101 http://debian.oregonstate.edu/debian unstable/main s390x libnss-nisplus s390x 1.3-4 [20.1 kB] Get:102 http://debian.oregonstate.edu/debian unstable/main s390x libc6 s390x 2.31-4 [2440 kB] Get:103 http://debian.oregonstate.edu/debian unstable/main s390x libasan5 s390x 9.3.0-19 [344 kB] Get:104 http://debian.oregonstate.edu/debian unstable/main s390x libatomic1 s390x 10.2.0-19 [8100 B] Get:105 http://debian.oregonstate.edu/debian unstable/main s390x linux-libc-dev s390x 5.9.11-1 [1229 kB] Get:106 http://debian.oregonstate.edu/debian unstable/main s390x libcrypt-dev s390x 1:4.4.17-1 [105 kB] Get:107 http://debian.oregonstate.edu/debian unstable/main s390x libtirpc-dev s390x 1.2.6-3 [185 kB] Get:108 http://debian.oregonstate.edu/debian unstable/main s390x libnsl-dev s390x 1.3.0-2 [64.6 kB] Get:109 http://debian.oregonstate.edu/debian unstable/main s390x libc6-dev s390x 2.31-4 [1967 kB] Get:110 http://debian.oregonstate.edu/debian unstable/main s390x libgomp1 s390x 10.2.0-19 [92.4 kB] Get:111 http://debian.oregonstate.edu/debian unstable/main s390x libitm1 s390x 10.2.0-19 [25.3 kB] Get:112 http://debian.oregonstate.edu/debian unstable/main s390x libstdc++6 s390x 10.2.0-19 [485 kB] Get:113 http://debian.oregonstate.edu/debian unstable/main s390x libubsan1 s390x 10.2.0-19 [125 kB] Get:114 http://debian.oregonstate.edu/debian unstable/main s390x libgcc-9-dev s390x 9.3.0-19 [682 kB] Get:115 http://debian.oregonstate.edu/debian unstable/main s390x libhmmer2-dev s390x 2.3.2+dfsg-7 [95.3 kB] Get:116 http://debian.oregonstate.edu/debian unstable/main s390x libsquid1 s390x 1.9g+cvs20050121-12 [72.3 kB] Get:117 http://debian.oregonstate.edu/debian unstable/main s390x libsquid-dev s390x 1.9g+cvs20050121-12 [141 kB] Get:118 http://debian.oregonstate.edu/debian unstable/main s390x libstdc++-9-dev s390x 9.3.0-19 [1668 kB] Get:119 http://debian.oregonstate.edu/debian unstable/main s390x libsvm3 s390x 3.24+ds-6 [41.8 kB] Get:120 http://debian.oregonstate.edu/debian unstable/main s390x libsvm-dev s390x 3.24+ds-6 [62.7 kB] Get:121 http://debian.oregonstate.edu/debian unstable/main amd64 pkg-config amd64 0.29.2-1 [65.1 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 235 MB in 2s (107 MB/s) Selecting previously unselected package bsdextrautils. (Reading database ... 10514 files and directories currently installed.) Preparing to unpack .../000-bsdextrautils_2.36.1-2_amd64.deb ... Unpacking bsdextrautils (2.36.1-2) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../001-libuchardet0_0.0.7-1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../002-groff-base_1.22.4-5_amd64.deb ... Unpacking groff-base (1.22.4-5) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../003-libpipeline1_1.5.3-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.3-1) ... Selecting previously unselected package man-db. Preparing to unpack .../004-man-db_2.9.3-2_amd64.deb ... Unpacking man-db (2.9.3-2) ... Selecting previously unselected package perl-modules-5.32. Preparing to unpack .../005-perl-modules-5.32_5.32.0-5_all.deb ... Unpacking perl-modules-5.32 (5.32.0-5) ... 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Unpacking libk5crypto3:s390x (1.18.3-4) ... Selecting previously unselected package libkeyutils1:s390x. Preparing to unpack .../092-libkeyutils1_1.6.1-2_s390x.deb ... Unpacking libkeyutils1:s390x (1.6.1-2) ... Selecting previously unselected package libssl1.1:s390x. Preparing to unpack .../093-libssl1.1_1.1.1h-1_s390x.deb ... Unpacking libssl1.1:s390x (1.1.1h-1) ... Selecting previously unselected package libkrb5-3:s390x. Preparing to unpack .../094-libkrb5-3_1.18.3-4_s390x.deb ... Unpacking libkrb5-3:s390x (1.18.3-4) ... Selecting previously unselected package libgssapi-krb5-2:s390x. Preparing to unpack .../095-libgssapi-krb5-2_1.18.3-4_s390x.deb ... Unpacking libgssapi-krb5-2:s390x (1.18.3-4) ... Selecting previously unselected package libtirpc3:s390x. Preparing to unpack .../096-libtirpc3_1.2.6-3_s390x.deb ... Unpacking libtirpc3:s390x (1.2.6-3) ... Selecting previously unselected package libnsl2:s390x. Preparing to unpack .../097-libnsl2_1.3.0-2_s390x.deb ... Unpacking libnsl2:s390x (1.3.0-2) ... Selecting previously unselected package libnss-nis:s390x. Preparing to unpack .../098-libnss-nis_3.1-4_s390x.deb ... Unpacking libnss-nis:s390x (3.1-4) ... Selecting previously unselected package libnss-nisplus:s390x. Preparing to unpack .../099-libnss-nisplus_1.3-4_s390x.deb ... Unpacking libnss-nisplus:s390x (1.3-4) ... Selecting previously unselected package libc6:s390x. Preparing to unpack .../100-libc6_2.31-4_s390x.deb ... Unpacking libc6:s390x (2.31-4) ... Selecting previously unselected package libasan5:s390x. Preparing to unpack .../101-libasan5_9.3.0-19_s390x.deb ... Unpacking libasan5:s390x (9.3.0-19) ... Selecting previously unselected package libatomic1:s390x. Preparing to unpack .../102-libatomic1_10.2.0-19_s390x.deb ... Unpacking libatomic1:s390x (10.2.0-19) ... Selecting previously unselected package linux-libc-dev:s390x. Preparing to unpack .../103-linux-libc-dev_5.9.11-1_s390x.deb ... Unpacking linux-libc-dev:s390x (5.9.11-1) ... Selecting previously unselected package libcrypt-dev:s390x. Preparing to unpack .../104-libcrypt-dev_1%3a4.4.17-1_s390x.deb ... Unpacking libcrypt-dev:s390x (1:4.4.17-1) ... Selecting previously unselected package libtirpc-dev:s390x. Preparing to unpack .../105-libtirpc-dev_1.2.6-3_s390x.deb ... Unpacking libtirpc-dev:s390x (1.2.6-3) ... Selecting previously unselected package libnsl-dev:s390x. Preparing to unpack .../106-libnsl-dev_1.3.0-2_s390x.deb ... Unpacking libnsl-dev:s390x (1.3.0-2) ... Selecting previously unselected package libc6-dev:s390x. Preparing to unpack .../107-libc6-dev_2.31-4_s390x.deb ... Unpacking libc6-dev:s390x (2.31-4) ... Selecting previously unselected package libgomp1:s390x. Preparing to unpack .../108-libgomp1_10.2.0-19_s390x.deb ... Unpacking libgomp1:s390x (10.2.0-19) ... Selecting previously unselected package libitm1:s390x. Preparing to unpack .../109-libitm1_10.2.0-19_s390x.deb ... Unpacking libitm1:s390x (10.2.0-19) ... Selecting previously unselected package libstdc++6:s390x. Preparing to unpack .../110-libstdc++6_10.2.0-19_s390x.deb ... Unpacking libstdc++6:s390x (10.2.0-19) ... Selecting previously unselected package libubsan1:s390x. Preparing to unpack .../111-libubsan1_10.2.0-19_s390x.deb ... Unpacking libubsan1:s390x (10.2.0-19) ... Selecting previously unselected package libgcc-9-dev:s390x. Preparing to unpack .../112-libgcc-9-dev_9.3.0-19_s390x.deb ... Unpacking libgcc-9-dev:s390x (9.3.0-19) ... Selecting previously unselected package libhmmer2-dev:s390x. Preparing to unpack .../113-libhmmer2-dev_2.3.2+dfsg-7_s390x.deb ... Unpacking libhmmer2-dev:s390x (2.3.2+dfsg-7) ... Selecting previously unselected package libsquid1:s390x. Preparing to unpack .../114-libsquid1_1.9g+cvs20050121-12_s390x.deb ... Unpacking libsquid1:s390x (1.9g+cvs20050121-12) ... Selecting previously unselected package libsquid-dev:s390x. Preparing to unpack .../115-libsquid-dev_1.9g+cvs20050121-12_s390x.deb ... Unpacking libsquid-dev:s390x (1.9g+cvs20050121-12) ... Selecting previously unselected package libstdc++-9-dev:s390x. Preparing to unpack .../116-libstdc++-9-dev_9.3.0-19_s390x.deb ... Unpacking libstdc++-9-dev:s390x (9.3.0-19) ... Selecting previously unselected package libsvm3:s390x. Preparing to unpack .../117-libsvm3_3.24+ds-6_s390x.deb ... Unpacking libsvm3:s390x (3.24+ds-6) ... Selecting previously unselected package libsvm-dev:s390x. Preparing to unpack .../118-libsvm-dev_3.24+ds-6_s390x.deb ... Unpacking libsvm-dev:s390x (3.24+ds-6) ... Selecting previously unselected package pkg-config. Preparing to unpack .../119-pkg-config_0.29.2-1_amd64.deb ... Unpacking pkg-config (0.29.2-1) ... Selecting previously unselected package sbuild-build-depends-main-dummy:s390x. Preparing to unpack .../120-sbuild-build-depends-main-dummy_0.invalid.0_s390x.deb ... Unpacking sbuild-build-depends-main-dummy:s390x (0.invalid.0) ... Setting up libconfig-inifiles-perl (3.000003-1) ... Setting up libpipeline1:amd64 (1.5.3-1) ... Setting up binutils-s390x-linux-gnu (2.35.1-3) ... Setting up bsdextrautils (2.36.1-2) ... update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode Setting up libicu67:amd64 (67.1-4) ... Setting up libmagic-mgc (1:5.39-3) ... Setting up libglib2.0-0:amd64 (2.66.3-1) ... No schema files found: doing nothing. Setting up perl-modules-5.32 (5.32.0-5) ... Setting up libc6-s390x-cross (2.31-1cross2) ... Setting up libmagic1:amd64 (1:5.39-3) ... Setting up linux-libc-dev:s390x (5.9.11-1) ... Setting up gettext-base (0.19.8.1-10) ... Setting up file (1:5.39-3) ... Setting up gcc-10-base:s390x (10.2.0-19) ... Setting up autotools-dev (20180224.1) ... Setting up linux-libc-dev-s390x-cross (5.7.6-1cross2) ... Setting up cross-config (2.6.15-3.1) ... Setting up libtirpc-dev:amd64 (1.2.6-3) ... Setting up libsigsegv2:amd64 (2.12-2) ... Setting up autopoint (0.19.8.1-10) ... Setting up d-shlibs (0.95) ... Setting up libperl5.32:amd64 (5.32.0-5) ... Setting up gcc-10-cross-base (10.2.0-19cross1) ... Setting up libitm1-s390x-cross (10.2.0-19cross1) ... Setting up libnsl-dev:amd64 (1.3.0-2) ... Setting up sensible-utils (0.0.12+nmu1) ... Setting up libc6-dev-s390x-cross (2.31-1cross2) ... Setting up libcrypt-dev:amd64 (1:4.4.17-1) ... Setting up libuchardet0:amd64 (0.0.7-1) ... Setting up libc6-dev:amd64 (2.31-4) ... Setting up libhmmer2-dev:s390x (2.3.2+dfsg-7) ... Setting up libelf1:amd64 (0.182-1) ... Setting up libgomp1-s390x-cross (10.2.0-19cross1) ... Setting up libxml2:amd64 (2.9.10+dfsg-6.2) ... Setting up gcc-10-s390x-linux-gnu-base:amd64 (10.2.0-19cross1) ... Setting up liblocale-gettext-perl (1.07-4+b1) ... Setting up gcc-9-base:s390x (9.3.0-19) ... Setting up libstdc++-10-dev:amd64 (10.2.0-19) ... Setting up g++-10 (10.2.0-19) ... Setting up libtool (2.4.6-14) ... Setting up libatomic1-s390x-cross (10.2.0-19cross1) ... Setting up m4 (1.4.18-4) ... Setting up perl (5.32.0-5) ... Setting up libcroco3:amd64 (0.6.13-1) ... Setting up libgcc-s1-s390x-cross (10.2.0-19cross1) ... Setting up ucf (3.0043) ... Setting up libdpkg-perl (1.20.5) ... Setting up autoconf (2.69-11.1) ... Setting up g++ (4:10.2.0-1) ... update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode Setting up dwz (0.13-5) ... Setting up groff-base (1.22.4-5) ... Setting up cpp-10-s390x-linux-gnu (10.2.0-19cross1) ... Setting up libsub-override-perl (0.09-2) ... Setting up automake (1:1.16.2-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-which-perl (1.23-1) ... Setting up gettext (0.19.8.1-10) ... Setting up cpp-s390x-linux-gnu (4:10.2.0-1) ... Setting up libstdc++6-s390x-cross (10.2.0-19cross1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.2.1) ... Setting up libxml-namespacesupport-perl (1.12-1) ... Setting up man-db (2.9.3-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libyaml-perl (1.30-1) ... Setting up libasan6-s390x-cross (10.2.0-19cross1) ... Setting up dpkg-dev (1.20.5) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libxml-sax-base-perl (1.09-1) ... Setting up libio-string-perl (1.08-3) ... Setting up pkg-config (0.29.2-1) ... Setting up build-essential (12.8) ... Setting up libfile-homedir-perl (1.006-1) ... Setting up libfile-stripnondeterminism-perl (1.9.0-1) ... Setting up libubsan1-s390x-cross (10.2.0-19cross1) ... Setting up po-debconf (1.0.21) ... Setting up libxml-sax-perl (1.02+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libgcc-10-dev-s390x-cross (10.2.0-19cross1) ... Setting up libxml-libxml-perl (2.0134+dfsg-2+b1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up dh-strip-nondeterminism (1.9.0-1) ... Setting up libstdc++-10-dev-s390x-cross (10.2.0-19cross1) ... Setting up gcc-10-s390x-linux-gnu (10.2.0-19cross1) ... Setting up gcc-s390x-linux-gnu (4:10.2.0-1) ... Setting up libxml-simple-perl (2.25-1) ... Setting up g++-10-s390x-linux-gnu (10.2.0-19cross1) ... Setting up g++-s390x-linux-gnu (4:10.2.0-1) ... Setting up libconfig-auto-perl (0.44-1) ... Setting up libdebian-dpkgcross-perl (2.6.15-3.1) ... Setting up dpkg-cross (2.6.15-3.1) ... Setting up crossbuild-essential-s390x (12.8) ... Setting up libcrypt1:s390x (1:4.4.17-1) ... Setting up libgcc-s1:s390x (10.2.0-19) ... Setting up libcrypt-dev:s390x (1:4.4.17-1) ... Setting up libtirpc3:s390x (1.2.6-3) ... Setting up dh-autoreconf (19) ... Setting up libtirpc-dev:s390x (1.2.6-3) ... Setting up libnsl2:s390x (1.3.0-2) ... Setting up debhelper (13.2.1) ... Setting up libnss-nisplus:s390x (1.3-4) ... Setting up libnss-nis:s390x (3.1-4) ... Setting up libc6:s390x (2.31-4) ... Setting up libsquid1:s390x (1.9g+cvs20050121-12) ... Setting up libnsl-dev:s390x (1.3.0-2) ... Setting up libc6-dev:s390x (2.31-4) ... Setting up libstdc++6:s390x (10.2.0-19) ... Setting up libitm1:s390x (10.2.0-19) ... Setting up libsvm3:s390x (3.24+ds-6) ... Setting up libkeyutils1:s390x (1.6.1-2) ... Setting up libssl1.1:s390x (1.1.1h-1) ... Setting up libcom-err2:s390x (1.45.6-1) ... Setting up libgomp1:s390x (10.2.0-19) ... Setting up libsquid-dev:s390x (1.9g+cvs20050121-12) ... Setting up libkrb5support0:s390x (1.18.3-4) ... Setting up libasan5:s390x (9.3.0-19) ... Setting up libsvm-dev:s390x (3.24+ds-6) ... Setting up libatomic1:s390x (10.2.0-19) ... Setting up libk5crypto3:s390x (1.18.3-4) ... Setting up libubsan1:s390x (10.2.0-19) ... Setting up libkrb5-3:s390x (1.18.3-4) ... Setting up libgcc-9-dev:s390x (9.3.0-19) ... Setting up libgssapi-krb5-2:s390x (1.18.3-4) ... Setting up libstdc++-9-dev:s390x (9.3.0-19) ... Setting up sbuild-build-depends-main-dummy:s390x (0.invalid.0) ... Processing triggers for libc-bin (2.31-4) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (s390x included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.19.0-12-amd64 #1 SMP Debian 4.19.152-1 (2020-10-18) amd64 (x86_64) Toolchain package versions: binutils_2.35.1-3 dpkg-dev_1.20.5 g++-10_10.2.0-19 gcc-10_10.2.0-19 libc6-dev_2.31-4 libstdc++-10-dev_10.2.0-19 libstdc++-10-dev-s390x-cross_10.2.0-19cross1 libstdc++-9-dev_9.3.0-19 libstdc++6_10.2.0-19 libstdc++6-s390x-cross_10.2.0-19cross1 linux-libc-dev_5.9.11-1 Package versions: adduser_3.118 apt_2.1.12 autoconf_2.69-11.1 automake_1:1.16.2-4 autopoint_0.19.8.1-10 autotools-dev_20180224.1 base-files_11 base-passwd_3.5.48 bash_5.1~rc3-1 binutils_2.35.1-3 binutils-common_2.35.1-3 binutils-s390x-linux-gnu_2.35.1-3 binutils-x86-64-linux-gnu_2.35.1-3 bsdextrautils_2.36.1-2 bsdutils_1:2.36.1-2 build-essential_12.8 bzip2_1.0.8-4 coreutils_8.32-4+b1 cpp_4:10.2.0-1 cpp-10_10.2.0-19 cpp-10-s390x-linux-gnu_10.2.0-19cross1 cpp-8_8.4.0-5 cpp-s390x-linux-gnu_4:10.2.0-1 cross-config_2.6.15-3.1 crossbuild-essential-s390x_12.8 d-shlibs_0.95 dash_0.5.11+git20200708+dd9ef66-2 debconf_1.5.74 debhelper_13.2.1 debian-archive-keyring_2019.1 debianutils_4.11.2 dh-autoreconf_19 dh-strip-nondeterminism_1.9.0-1 diffutils_1:3.7-3 dpkg_1.20.5 dpkg-cross_2.6.15-3.1 dpkg-dev_1.20.5 dwz_0.13-5 e2fsprogs_1.45.6-1 fakeroot_1.25.3-1.1 fdisk_2.36.1-2 file_1:5.39-3 findutils_4.7.0+git20201010-2 g++_4:10.2.0-1 g++-10_10.2.0-19 g++-10-s390x-linux-gnu_10.2.0-19cross1 g++-s390x-linux-gnu_4:10.2.0-1 gcc_4:10.2.0-1 gcc-10_10.2.0-19 gcc-10-base_10.2.0-19 gcc-10-cross-base_10.2.0-19cross1 gcc-10-s390x-linux-gnu_10.2.0-19cross1 gcc-10-s390x-linux-gnu-base_10.2.0-19cross1 gcc-8-base_8.4.0-5 gcc-9-base_9.3.0-19 gcc-s390x-linux-gnu_4:10.2.0-1 gettext_0.19.8.1-10 gettext-base_0.19.8.1-10 gpgv_2.2.20-1 grep_3.6-1 groff-base_1.22.4-5 gzip_1.10-2 hostname_3.23 init-system-helpers_1.59 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-8 libapt-pkg5.0_1.8.4 libapt-pkg6.0_2.1.12 libarchive-zip-perl_1.68-1 libasan5_9.3.0-19 libasan6_10.2.0-19 libasan6-s390x-cross_10.2.0-19cross1 libatomic1_10.2.0-19 libatomic1-s390x-cross_10.2.0-19cross1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-3.1 libaudit1_1:2.8.5-3.1 libbinutils_2.35.1-3 libblkid1_2.36.1-2 libbz2-1.0_1.0.8-4 libc-bin_2.31-4 libc-dev-bin_2.31-4 libc6_2.31-4 libc6-dev_2.31-4 libc6-dev-s390x-cross_2.31-1cross2 libc6-s390x-cross_2.31-1cross2 libcap-ng0_0.7.9-2.2+b1 libcc1-0_10.2.0-19 libcom-err2_1.45.6-1 libconfig-auto-perl_0.44-1 libconfig-inifiles-perl_3.000003-1 libcroco3_0.6.13-1 libcrypt-dev_1:4.4.17-1 libcrypt1_1:4.4.17-1 libctf-nobfd0_2.35.1-3 libctf0_2.35.1-3 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.255 libdebhelper-perl_13.2.1 libdebian-dpkgcross-perl_2.6.15-3.1 libdpkg-perl_1.20.5 libelf1_0.182-1 libext2fs2_1.45.6-1 libfakeroot_1.25.3-1.1 libfdisk1_2.36.1-2 libffi6_3.2.1-9 libffi7_3.3-5 libfile-homedir-perl_1.006-1 libfile-stripnondeterminism-perl_1.9.0-1 libfile-which-perl_1.23-1 libgcc-10-dev_10.2.0-19 libgcc-10-dev-s390x-cross_10.2.0-19cross1 libgcc-9-dev_9.3.0-19 libgcc-s1_10.2.0-19 libgcc-s1-s390x-cross_10.2.0-19cross1 libgcrypt20_1.8.7-2 libgdbm-compat4_1.18.1-5.1 libgdbm6_1.18.1-5.1 libglib2.0-0_2.66.3-1 libgmp10_2:6.2.1+dfsg-1 libgnutls30_3.6.15-4 libgomp1_10.2.0-19 libgomp1-s390x-cross_10.2.0-19cross1 libgpg-error0_1.38-2 libgssapi-krb5-2_1.18.3-4 libhmmer2-dev_2.3.2+dfsg-7 libhogweed4_3.5.1+really3.4.1-1 libhogweed6_3.6-2 libicu67_67.1-4 libidn2-0_2.3.0-4 libio-string-perl_1.08-3 libisl19_0.20-2 libisl23_0.23-1 libitm1_10.2.0-19 libitm1-s390x-cross_10.2.0-19cross1 libk5crypto3_1.18.3-4 libkeyutils1_1.6.1-2 libkrb5-3_1.18.3-4 libkrb5support0_1.18.3-4 liblocale-gettext-perl_1.07-4+b1 liblsan0_10.2.0-19 liblz4-1_1.9.2-2 liblzma5_5.2.4-1+b1 libmagic-mgc_1:5.39-3 libmagic1_1:5.39-3 libmount1_2.36.1-2 libmpc3_1.2.0-1 libmpfr6_4.1.0-3 libmpx2_8.4.0-5 libncursesw6_6.2+20201114-1 libnettle6_3.5.1+really3.4.1-1 libnettle8_3.6-2 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libnss-nis_3.1-4 libnss-nisplus_1.3-4 libp11-kit0_0.23.21-2 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpcre2-8-0_10.34-7 libpcre3_2:8.39-13 libperl5.28_5.28.1-6 libperl5.32_5.32.0-5 libpipeline1_1.5.3-1 libquadmath0_10.2.0-19 libseccomp2_2.5.0-3 libselinux1_3.1-2+b1 libsemanage-common_3.1-1 libsemanage1_3.1-1+b1 libsepol1_3.1-1 libsigsegv2_2.12-2 libsmartcols1_2.36.1-2 libsquid-dev_1.9g+cvs20050121-12 libsquid1_1.9g+cvs20050121-12 libss2_1.45.6-1 libssl1.1_1.1.1h-1 libstdc++-10-dev_10.2.0-19 libstdc++-10-dev-s390x-cross_10.2.0-19cross1 libstdc++-9-dev_9.3.0-19 libstdc++6_10.2.0-19 libstdc++6-s390x-cross_10.2.0-19cross1 libsub-override-perl_0.09-2 libsvm-dev_3.24+ds-6 libsvm3_3.24+ds-6 libsystemd0_246.6-5 libtasn1-6_4.16.0-2 libtinfo6_6.2+20201114-1 libtirpc-common_1.2.6-3 libtirpc-dev_1.2.6-3 libtirpc3_1.2.6-3 libtool_2.4.6-14 libtsan0_10.2.0-19 libubsan1_10.2.0-19 libubsan1-s390x-cross_10.2.0-19cross1 libuchardet0_0.0.7-1 libudev1_246.6-5 libunistring2_0.9.10-4 libuuid1_2.36.1-2 libxml-libxml-perl_2.0134+dfsg-2+b1 libxml-namespacesupport-perl_1.12-1 libxml-sax-base-perl_1.09-1 libxml-sax-perl_1.02+dfsg-1 libxml-simple-perl_2.25-1 libxml2_2.9.10+dfsg-6.2 libyaml-perl_1.30-1 libzstd1_1.4.5+dfsg-4 linux-libc-dev_5.9.11-1 linux-libc-dev-s390x-cross_5.7.6-1cross2 login_1:4.8.1-1 logsave_1.45.6-1 lsb-base_11.1.0 m4_1.4.18-4 make_4.3-4 man-db_2.9.3-2 mawk_1.3.4.20200120-2 mount_2.36.1-2 ncurses-base_6.2+20201114-1 ncurses-bin_6.2+20201114-1 passwd_1:4.8.1-1 patch_2.7.6-6 perl_5.32.0-5 perl-base_5.32.0-5 perl-modules-5.28_5.28.1-6 perl-modules-5.32_5.32.0-5 pkg-config_0.29.2-1 po-debconf_1.0.21 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 sysvinit-utils_2.96-5 tar_1.32+dfsg-1 tzdata_2020d-1 ucf_3.0043 util-linux_2.36.1-2 xz-utils_5.2.4-1+b1 zlib1g_1:1.2.11.dfsg-2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: libpsortb Binary: libmodhmm0, libmodhmm-dev, libsvmloc0, libsvmloc-dev Architecture: any Version: 1.0+dfsg-3 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: http://www.psort.org/ Standards-Version: 4.3.0 Vcs-Browser: https://salsa.debian.org/med-team/libpsortb Vcs-Git: https://salsa.debian.org/med-team/libpsortb.git Build-Depends: debhelper (>= 11~), d-shlibs, libsvm-dev, libsquid-dev, libhmmer2-dev, pkg-config Package-List: libmodhmm-dev deb libdevel optional arch=any libmodhmm0 deb libs optional arch=any libsvmloc-dev deb libdevel optional arch=any libsvmloc0 deb libs optional arch=any Checksums-Sha1: 44d3705f46372837f5ecdf8fa2ad0273a6c38433 95644 libpsortb_1.0+dfsg.orig.tar.xz 9581ed83240d7e44651767b9035807e8e1eda53e 4956 libpsortb_1.0+dfsg-3.debian.tar.xz Checksums-Sha256: 5021b7ac656b33b8f0aa8c2e0403056a5459e1b92c17008b3ff442e262b3e2e5 95644 libpsortb_1.0+dfsg.orig.tar.xz c9dc56178e2cc354432463ca370716d879031412a0d01bd4636349e696053c19 4956 libpsortb_1.0+dfsg-3.debian.tar.xz Files: f9c6cf32032da4c9e88b609fba9bb02d 95644 libpsortb_1.0+dfsg.orig.tar.xz 16ac9a3c62655d61a2a274551465224e 4956 libpsortb_1.0+dfsg-3.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEck1gkzcRPHEFUNdHPCZ2P2xn5uIFAlwwp9EACgkQPCZ2P2xn 5uJzaBAAoqn9fmd3ekBpzVbP0/8Wg6Zqn3GepMhvecTmbzPGHlT/GBpL22miX86z 6nTJG0tATGr9haxfXcYhZrErGb0CJwpooG8juHytoJCO34lKB+KHAMSY1ZzPIiJL FxWePp4JXkTHSrBvwdEYdhlbQBpEQp9r1klnAGxfYU5L4P7eNFR/WIsiEGzBtaq1 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libpsortb_1.0+dfsg.orig.tar.xz dpkg-source: info: unpacking libpsortb_1.0+dfsg-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying use_debian_packaged_libs.patch dpkg-source: info: applying use_debian_packaged_libsvm.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.s390x DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LOGNAME=helmut PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1003 SCHROOT_GROUP=helmut SCHROOT_SESSION_ID=unstable-amd64-sbuild-899ccd75-81df-4c83-b744-36017a922faa SCHROOT_UID=1003 SCHROOT_USER=helmut SHELL=/bin/sh USER=helmut dpkg-buildpackage ----------------- Command: dpkg-buildpackage -as390x -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package libpsortb dpkg-buildpackage: info: source version 1.0+dfsg-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Michael R. Crusoe dpkg-architecture: warning: specified GNU system type s390x-linux-gnu does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture s390x fakeroot debian/rules clean dh clean dh_clean debian/rules build-arch dh build-arch dh_update_autotools_config -a dh_autoreconf -a libtoolize: putting auxiliary files in '.'. libtoolize: copying file './ltmain.sh' libtoolize: Consider adding 'AC_CONFIG_MACRO_DIRS([m4])' to configure.ac, libtoolize: and rerunning libtoolize and aclocal. libtoolize: Consider adding '-I m4' to ACLOCAL_AMFLAGS in Makefile.am. configure.ac:12: installing './compile' configure.ac:17: installing './config.guess' configure.ac:17: installing './config.sub' configure.ac:8: installing './install-sh' configure.ac:8: installing './missing' modhmm0.92b/Makefile.am: installing './depcomp' dh_auto_configure -a ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/s390x-linux-gnu --libexecdir=\${prefix}/lib/s390x-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --host=s390x-linux-gnu configure: loading site script /etc/dpkg-cross/cross-config.s390x checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for s390x-linux-gnu-strip... s390x-linux-gnu-strip checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for s390x-linux-gnu-g++... s390x-linux-gnu-g++ checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... yes checking for suffix of object files... o checking whether we are using the GNU C++ compiler... yes checking whether s390x-linux-gnu-g++ accepts -g... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of s390x-linux-gnu-g++... none checking for s390x-linux-gnu-gcc... s390x-linux-gnu-gcc checking whether we are using the GNU C compiler... yes checking whether s390x-linux-gnu-gcc accepts -g... yes checking for s390x-linux-gnu-gcc option to accept ISO C89... none needed checking whether s390x-linux-gnu-gcc understands -c and -o together... yes checking dependency style of s390x-linux-gnu-gcc... none checking how to run the C preprocessor... s390x-linux-gnu-gcc -E checking whether ln -s works... yes checking whether make sets $(MAKE)... (cached) yes checking build system type... x86_64-pc-linux-gnu checking host system type... s390x-ibm-linux-gnu checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by s390x-linux-gnu-gcc... /usr/s390x-linux-gnu/bin/ld checking if the linker (/usr/s390x-linux-gnu/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/s390x-linux-gnu-nm -B checking the name lister (/usr/bin/s390x-linux-gnu-nm -B) interface... BSD nm checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-pc-linux-gnu file names to s390x-ibm-linux-gnu format... func_convert_file_noop checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/s390x-linux-gnu/bin/ld option to reload object files... -r checking for s390x-linux-gnu-objdump... s390x-linux-gnu-objdump checking how to recognize dependent libraries... pass_all checking for s390x-linux-gnu-dlltool... no checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for s390x-linux-gnu-ar... s390x-linux-gnu-ar checking for archiver @FILE support... @ checking for s390x-linux-gnu-strip... (cached) s390x-linux-gnu-strip checking for s390x-linux-gnu-ranlib... s390x-linux-gnu-ranlib checking command to parse /usr/bin/s390x-linux-gnu-nm -B output from s390x-linux-gnu-gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for s390x-linux-gnu-mt... no checking for mt... no checking if : is a manifest tool... no checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if s390x-linux-gnu-gcc supports -fno-rtti -fno-exceptions... no checking for s390x-linux-gnu-gcc option to produce PIC... -fPIC -DPIC checking if s390x-linux-gnu-gcc PIC flag -fPIC -DPIC works... yes checking if s390x-linux-gnu-gcc static flag -static works... yes checking if s390x-linux-gnu-gcc supports -c -o file.o... yes checking if s390x-linux-gnu-gcc supports -c -o file.o... (cached) yes checking whether the s390x-linux-gnu-gcc linker (/usr/s390x-linux-gnu/bin/ld -m elf64_s390) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking how to run the C++ preprocessor... s390x-linux-gnu-g++ -E checking for ld used by s390x-linux-gnu-g++... /usr/s390x-linux-gnu/bin/ld -m elf64_s390 checking if the linker (/usr/s390x-linux-gnu/bin/ld -m elf64_s390) is GNU ld... yes checking whether the s390x-linux-gnu-g++ linker (/usr/s390x-linux-gnu/bin/ld -m elf64_s390) supports shared libraries... yes checking for s390x-linux-gnu-g++ option to produce PIC... -fPIC -DPIC checking if s390x-linux-gnu-g++ PIC flag -fPIC -DPIC works... yes checking if s390x-linux-gnu-g++ static flag -static works... yes checking if s390x-linux-gnu-g++ supports -c -o file.o... yes checking if s390x-linux-gnu-g++ supports -c -o file.o... (cached) yes checking whether the s390x-linux-gnu-g++ linker (/usr/s390x-linux-gnu/bin/ld -m elf64_s390) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for main in -lm... yes checking for ANSI C header files... (cached) yes checking float.h usability... yes checking float.h presence... yes checking for float.h... yes checking limits.h usability... yes checking limits.h presence... yes checking for limits.h... yes checking for memory.h... (cached) yes checking netinet/in.h usability... yes checking netinet/in.h presence... yes checking for netinet/in.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for unistd.h... (cached) yes checking for stdbool.h that conforms to C99... yes checking for _Bool... yes checking for an ANSI C-conforming const... yes checking for inline... inline checking for size_t... yes checking whether time.h and sys/time.h may both be included... yes checking whether struct tm is in sys/time.h or time.h... time.h checking for _LARGEFILE_SOURCE value needed for large files... no checking for stdlib.h... (cached) yes checking for GNU libc compatible malloc... (cached) yes checking for stdlib.h... (cached) yes checking for GNU libc compatible realloc... (cached) yes checking whether lstat correctly handles trailing slash... no checking whether stat accepts an empty string... yes checking for strftime... yes checking for vprintf... yes checking for _doprnt... no checking for working strtod... no checking for pow... yes checking for atexit... yes checking for floor... yes checking for memmove... yes checking for memset... yes checking for pow... (cached) yes checking for sqrt... yes checking for strchr... yes checking for strcspn... yes checking for strerror... yes checking for strpbrk... yes checking for strrchr... yes checking for strspn... yes checking for strstr... yes checking for strtol... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating svmloc/Makefile config.status: creating modhmm0.92b/Makefile config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands dh_auto_build -a make -j1 make[1]: Entering directory '/<>' make all-recursive make[2]: Entering directory '/<>' Making all in svmloc make[3]: Entering directory '/<>/svmloc' /bin/bash ../libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o binding.lo binding.cpp libtool: compile: s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c binding.cpp -fPIC -DPIC -o .libs/binding.o libtool: compile: s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c binding.cpp -o binding.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o svmloc.lo svmloc.cpp libtool: compile: s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c svmloc.cpp -fPIC -DPIC -o .libs/svmloc.o libtool: compile: s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c svmloc.cpp -o svmloc.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=link s390x-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -version-info 0:0:0 -lsvm -Wl,-z,relro -Wl,-z,now -o libsvmloc.la -rpath /usr/lib/s390x-linux-gnu binding.lo svmloc.lo -lm libtool: link: s390x-linux-gnu-g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc-cross/s390x-linux-gnu/10/../../../../s390x-linux-gnu/lib/../lib/crti.o /usr/lib/gcc-cross/s390x-linux-gnu/10/crtbeginS.o .libs/binding.o .libs/svmloc.o -lsvm -L/usr/lib/gcc-cross/s390x-linux-gnu/10 -L/usr/lib/gcc-cross/s390x-linux-gnu/10/../../../../s390x-linux-gnu/lib/../lib -L/lib/s390x-linux-gnu -L/lib/../lib -L/usr/lib/s390x-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc-cross/s390x-linux-gnu/10/../../../../s390x-linux-gnu/lib -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc-cross/s390x-linux-gnu/10/crtendS.o /usr/lib/gcc-cross/s390x-linux-gnu/10/../../../../s390x-linux-gnu/lib/../lib/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,libsvmloc.so.0 -o .libs/libsvmloc.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libsvmloc.so.0" && ln -s "libsvmloc.so.0.0.0" "libsvmloc.so.0") libtool: link: (cd ".libs" && rm -f "libsvmloc.so" && ln -s "libsvmloc.so.0.0.0" "libsvmloc.so") libtool: link: s390x-linux-gnu-ar cr .libs/libsvmloc.a binding.o svmloc.o libtool: link: s390x-linux-gnu-ranlib .libs/libsvmloc.a libtool: link: ( cd ".libs" && rm -f "libsvmloc.la" && ln -s "../libsvmloc.la" "libsvmloc.la" ) make[3]: Leaving directory '/<>/svmloc' Making all in modhmm0.92b make[3]: Entering directory '/<>/modhmm0.92b' /bin/bash ../libtool --tag=CC --mode=compile s390x-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o core_algorithms_multialpha.lo core_algorithms_multialpha.c libtool: compile: s390x-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c core_algorithms_multialpha.c -fPIC -DPIC -o .libs/core_algorithms_multialpha.o core_algorithms_multialpha.c: In function ‘msa_forward_multi’: core_algorithms_multialpha.c:1192:87: warning: passing argument 1 of ‘get_alphabet_index’ from incompatible pointer type [-Wincompatible-pointer-types] 1192 | a_index = get_alphabet_index((msa_seq_infop->msa_seq_1 + (c * (hmmp->a_size+1)))->query_letter, hmmp->alphabet, hmmp->a_size); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ | | | char * In file included from core_algorithms_multialpha.c:7: funcs.h:136:24: note: expected ‘struct letter_s *’ but argument is of type ‘char *’ 136 | int get_alphabet_index(struct letter_s*, char*, int); | ^~~~~~~~~~~~~~~~ core_algorithms_multialpha.c:1199:86: warning: passing argument 1 of ‘get_alphabet_index’ from incompatible pointer type [-Wincompatible-pointer-types] 1199 | a_index_2 = get_alphabet_index((msa_seq_infop->msa_seq_2 + (c * (hmmp->a_size_2+1)))->query_letter, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ | | | char * In file included from core_algorithms_multialpha.c:7: funcs.h:136:24: note: expected ‘struct letter_s *’ but argument is of type ‘char *’ 136 | int get_alphabet_index(struct letter_s*, char*, int); | ^~~~~~~~~~~~~~~~ core_algorithms_multialpha.c:1208:86: warning: passing argument 1 of ‘get_alphabet_index’ from incompatible pointer type [-Wincompatible-pointer-types] 1208 | a_index_3 = get_alphabet_index((msa_seq_infop->msa_seq_3 + (c * (hmmp->a_size_3+1)))->query_letter, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ | | | char * In file included from core_algorithms_multialpha.c:7: funcs.h:136:24: note: expected ‘struct letter_s *’ but argument is of type ‘char *’ 136 | int get_alphabet_index(struct letter_s*, char*, int); | ^~~~~~~~~~~~~~~~ core_algorithms_multialpha.c:1217:86: warning: passing argument 1 of ‘get_alphabet_index’ from incompatible pointer type [-Wincompatible-pointer-types] 1217 | a_index_4 = get_alphabet_index((msa_seq_infop->msa_seq_4 + (c * (hmmp->a_size_4+1)))->query_letter, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ | | | char * In file included from core_algorithms_multialpha.c:7: funcs.h:136:24: note: expected ‘struct letter_s *’ but argument is of type ‘char *’ 136 | int get_alphabet_index(struct letter_s*, char*, int); | ^~~~~~~~~~~~~~~~ core_algorithms_multialpha.c: In function ‘msa_backward_multi’: core_algorithms_multialpha.c:1419:87: warning: passing argument 1 of ‘get_alphabet_index’ from incompatible pointer type [-Wincompatible-pointer-types] 1419 | a_index = get_alphabet_index((msa_seq_infop->msa_seq_1 + (c * (hmmp->a_size+1)))->query_letter, hmmp->alphabet, hmmp->a_size); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ | | | char * In file included from core_algorithms_multialpha.c:7: funcs.h:136:24: note: expected ‘struct letter_s *’ but argument is of type ‘char *’ 136 | int get_alphabet_index(struct letter_s*, char*, int); | ^~~~~~~~~~~~~~~~ core_algorithms_multialpha.c:1426:86: warning: passing argument 1 of ‘get_alphabet_index’ from incompatible pointer type [-Wincompatible-pointer-types] 1426 | a_index_2 = get_alphabet_index((msa_seq_infop->msa_seq_2 + (c * (hmmp->a_size_2+1)))->query_letter, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ | | | char * In file included from core_algorithms_multialpha.c:7: funcs.h:136:24: note: expected ‘struct letter_s *’ but argument is of type ‘char *’ 136 | int get_alphabet_index(struct letter_s*, char*, int); | ^~~~~~~~~~~~~~~~ core_algorithms_multialpha.c:1435:86: warning: passing argument 1 of ‘get_alphabet_index’ from incompatible pointer type [-Wincompatible-pointer-types] 1435 | a_index_3 = get_alphabet_index((msa_seq_infop->msa_seq_3 + (c * (hmmp->a_size_3+1)))->query_letter, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ | | | char * In file included from core_algorithms_multialpha.c:7: funcs.h:136:24: note: expected ‘struct letter_s *’ but argument is of type ‘char *’ 136 | int get_alphabet_index(struct letter_s*, char*, int); | ^~~~~~~~~~~~~~~~ core_algorithms_multialpha.c:1444:86: warning: passing argument 1 of ‘get_alphabet_index’ from incompatible pointer type [-Wincompatible-pointer-types] 1444 | a_index_4 = get_alphabet_index((msa_seq_infop->msa_seq_4 + (c * (hmmp->a_size_4+1)))->query_letter, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ | | | char * In file included from core_algorithms_multialpha.c:7: funcs.h:136:24: note: expected ‘struct letter_s *’ but argument is of type ‘char *’ 136 | int get_alphabet_index(struct letter_s*, char*, int); | ^~~~~~~~~~~~~~~~ core_algorithms_multialpha.c: In function ‘msa_viterbi_multi’: core_algorithms_multialpha.c:1608:87: warning: passing argument 1 of ‘get_alphabet_index’ from incompatible pointer type [-Wincompatible-pointer-types] 1608 | a_index = get_alphabet_index((msa_seq_infop->msa_seq_1 + (c * (hmmp->a_size+1)))->query_letter, hmmp->alphabet, hmmp->a_size); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ | | | char * In file included from core_algorithms_multialpha.c:7: funcs.h:136:24: note: expected ‘struct letter_s *’ but argument is of type ‘char *’ 136 | int get_alphabet_index(struct letter_s*, char*, int); | ^~~~~~~~~~~~~~~~ core_algorithms_multialpha.c:1615:86: warning: passing argument 1 of ‘get_alphabet_index’ from incompatible pointer type [-Wincompatible-pointer-types] 1615 | a_index_2 = get_alphabet_index((msa_seq_infop->msa_seq_2 + (c * (hmmp->a_size_2+1)))->query_letter, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ | | | char * In file included from core_algorithms_multialpha.c:7: funcs.h:136:24: note: expected ‘struct letter_s *’ but argument is of type ‘char *’ 136 | int get_alphabet_index(struct letter_s*, char*, int); | ^~~~~~~~~~~~~~~~ core_algorithms_multialpha.c:1624:86: warning: passing argument 1 of ‘get_alphabet_index’ from incompatible pointer type [-Wincompatible-pointer-types] 1624 | a_index_3 = get_alphabet_index((msa_seq_infop->msa_seq_3 + (c * (hmmp->a_size_3+1)))->query_letter, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ | | | char * In file included from core_algorithms_multialpha.c:7: funcs.h:136:24: note: expected ‘struct letter_s *’ but argument is of type ‘char *’ 136 | int get_alphabet_index(struct letter_s*, char*, int); | ^~~~~~~~~~~~~~~~ core_algorithms_multialpha.c:1633:86: warning: passing argument 1 of ‘get_alphabet_index’ from incompatible pointer type [-Wincompatible-pointer-types] 1633 | a_index_4 = get_alphabet_index((msa_seq_infop->msa_seq_4 + (c * (hmmp->a_size_4+1)))->query_letter, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ | | | char * In file included from core_algorithms_multialpha.c:7: funcs.h:136:24: note: expected ‘struct letter_s *’ but argument is of type ‘char *’ 136 | int get_alphabet_index(struct letter_s*, char*, int); | ^~~~~~~~~~~~~~~~ core_algorithms_multialpha.c: In function ‘msa_one_best_multi’: core_algorithms_multialpha.c:1892:87: warning: passing argument 1 of ‘get_alphabet_index’ from incompatible pointer type [-Wincompatible-pointer-types] 1892 | a_index = get_alphabet_index((msa_seq_infop->msa_seq_1 + (c * (hmmp->a_size+1)))->query_letter, hmmp->alphabet, hmmp->a_size); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ | | | char * In file included from core_algorithms_multialpha.c:7: funcs.h:136:24: note: expected ‘struct letter_s *’ but argument is of type ‘char *’ 136 | int get_alphabet_index(struct letter_s*, char*, int); | ^~~~~~~~~~~~~~~~ core_algorithms_multialpha.c:1899:86: warning: passing argument 1 of ‘get_alphabet_index’ from incompatible pointer type [-Wincompatible-pointer-types] 1899 | a_index_2 = get_alphabet_index((msa_seq_infop->msa_seq_2 + (c * (hmmp->a_size_2+1)))->query_letter, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ | | | char * In file included from core_algorithms_multialpha.c:7: funcs.h:136:24: note: expected ‘struct letter_s *’ but argument is of type ‘char *’ 136 | int get_alphabet_index(struct letter_s*, char*, int); | ^~~~~~~~~~~~~~~~ core_algorithms_multialpha.c:1908:86: warning: passing argument 1 of ‘get_alphabet_index’ from incompatible pointer type [-Wincompatible-pointer-types] 1908 | a_index_3 = get_alphabet_index((msa_seq_infop->msa_seq_3 + (c * (hmmp->a_size_3+1)))->query_letter, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ | | | char * In file included from core_algorithms_multialpha.c:7: funcs.h:136:24: note: expected ‘struct letter_s *’ but argument is of type ‘char *’ 136 | int get_alphabet_index(struct letter_s*, char*, int); | ^~~~~~~~~~~~~~~~ core_algorithms_multialpha.c:1917:86: warning: passing argument 1 of ‘get_alphabet_index’ from incompatible pointer type [-Wincompatible-pointer-types] 1917 | a_index_4 = get_alphabet_index((msa_seq_infop->msa_seq_4 + (c * (hmmp->a_size_4+1)))->query_letter, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ | | | char * In file included from core_algorithms_multialpha.c:7: funcs.h:136:24: note: expected ‘struct letter_s *’ but argument is of type ‘char *’ 136 | int get_alphabet_index(struct letter_s*, char*, int); | ^~~~~~~~~~~~~~~~ libtool: compile: s390x-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c core_algorithms_multialpha.c -o core_algorithms_multialpha.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=compile s390x-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o debug_funcs.lo debug_funcs.c libtool: compile: s390x-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c debug_funcs.c -fPIC -DPIC -o .libs/debug_funcs.o debug_funcs.c: In function ‘dump_viterbi_path’: debug_funcs.c:320:38: warning: implicit declaration of function ‘get_mtx_index’ [-Wimplicit-function-declaration] 320 | dump_viterbi_path(viterbi_mtxp + get_mtx_index(row-1, cur->prev, row_size), hmmp, | ^~~~~~~~~~~~~ debug_funcs.c: In function ‘dump_replacement_letters’: debug_funcs.c:861:14: warning: format ‘%c’ expects argument of type ‘int’, but argument 2 has type ‘struct letter_s’ [-Wformat=] 861 | printf("%c ", (*(replacement_letters->letters + i))); | ~^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | int struct letter_s debug_funcs.c: In function ‘dump_replacement_letters_multi’: debug_funcs.c:915:16: warning: format ‘%c’ expects argument of type ‘int’, but argument 2 has type ‘struct letter_s’ [-Wformat=] 915 | printf("%c ", (*(replacement_letters->letters_1 + i))); | ~^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | int struct letter_s debug_funcs.c:918:16: warning: format ‘%c’ expects argument of type ‘int’, but argument 2 has type ‘struct letter_s’ [-Wformat=] 918 | printf("%c ", (*(replacement_letters->letters_2 + i))); | ~^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | int struct letter_s debug_funcs.c:921:16: warning: format ‘%c’ expects argument of type ‘int’, but argument 2 has type ‘struct letter_s’ [-Wformat=] 921 | printf("%c ", (*(replacement_letters->letters_3 + i))); | ~^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | int struct letter_s debug_funcs.c:924:16: warning: format ‘%c’ expects argument of type ‘int’, but argument 2 has type ‘struct letter_s’ [-Wformat=] 924 | printf("%c ", (*(replacement_letters->letters_4 + i))); | ~^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | int struct letter_s libtool: compile: s390x-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c debug_funcs.c -o debug_funcs.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=compile s390x-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o hmmsearch.lo hmmsearch.c libtool: compile: s390x-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c hmmsearch.c -fPIC -DPIC -o .libs/hmmsearch.o hmmsearch.c: In function ‘get_scores’: hmmsearch.c:535:19: warning: assignment to ‘struct helix_site *’ from incompatible pointer type ‘helix_sites *’ [-Wincompatible-pointer-types] 535 | hSites->helix = (helix_sites *) malloc(sizeof (helix_sites) * helices); | ^ hmmsearch.c: In function ‘get_nullmodel_score_multi’: hmmsearch.c:656:35: warning: format ‘%s’ expects argument of type ‘char *’, but argument 2 has type ‘struct letter_s *’ [-Wformat=] 656 | printf("Could not find letter %s when scoring null model\n", &seq[l]); | ~^ ~~~~~~~ | | | | char * struct letter_s * hmmsearch.c:674:37: warning: format ‘%s’ expects argument of type ‘char *’, but argument 2 has type ‘struct letter_s *’ [-Wformat=] 674 | printf("Could not find letter %s when scoring null model\n", &seq_2[l]); | ~^ ~~~~~~~~~ | | | | char * struct letter_s * hmmsearch.c:693:37: warning: format ‘%s’ expects argument of type ‘char *’, but argument 2 has type ‘struct letter_s *’ [-Wformat=] 693 | printf("Could not find letter %s when scoring null model\n", &seq_3[l]); | ~^ ~~~~~~~~~ | | | | char * struct letter_s * hmmsearch.c:712:37: warning: format ‘%s’ expects argument of type ‘char *’, but argument 2 has type ‘struct letter_s *’ [-Wformat=] 712 | printf("Could not find letter %s when scoring null model\n", &seq[l]); | ~^ ~~~~~~~ | | | | char * struct letter_s * libtool: compile: s390x-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c hmmsearch.c -o hmmsearch.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=compile s390x-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o readhmm.lo readhmm.c libtool: compile: s390x-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c readhmm.c -fPIC -DPIC -o .libs/readhmm.o readhmm.c: In function ‘readhmm’: readhmm.c:121:28: warning: assignment to ‘struct transition_s *’ from incompatible pointer type ‘int *’ [-Wincompatible-pointer-types] 121 | hmmp->trans_tie_groups = (int*)(malloc_or_die((hmmp->nr_t + hmmp->nr_ttg) * sizeof(struct transition_s))); | ^ readhmm.c: In function ‘readanhmm’: readhmm.c:397:28: warning: assignment to ‘struct transition_s *’ from incompatible pointer type ‘int *’ [-Wincompatible-pointer-types] 397 | hmmp->trans_tie_groups = (int*)(malloc_or_die((hmmp->nr_t + hmmp->nr_ttg) * sizeof(struct transition_s))); | ^ readhmm.c: In function ‘readhmm’: readhmm.c:69:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 69 | fgets(s, MAX_LINE, file); | ^~~~~~~~~~~~~~~~~~~~~~~~ readhmm.c: In function ‘readanhmm’: readhmm.c:345:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 345 | fgets(s, MAX_LINE, file); | ^~~~~~~~~~~~~~~~~~~~~~~~ readhmm.c: In function ‘read_module’: readhmm.c:751:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 751 | fgets(s, MAX_LINE, file); | ^~~~~~~~~~~~~~~~~~~~~~~~ readhmm.c:786:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 786 | fgets(s, MAX_LINE, file); | ^~~~~~~~~~~~~~~~~~~~~~~~ readhmm.c:821:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 821 | fgets(s, MAX_LINE, file); | ^~~~~~~~~~~~~~~~~~~~~~~~ readhmm.c:850:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 850 | fgets(s, MAX_LINE, file); | ^~~~~~~~~~~~~~~~~~~~~~~~ readhmm.c:854:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 854 | fgets(s, MAX_LINE, file); | ^~~~~~~~~~~~~~~~~~~~~~~~ readhmm.c: In function ‘read_prior_files’: readhmm.c:1231:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1231 | fgets(ps, 2048, priorfile); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ libtool: compile: s390x-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c readhmm.c -o readhmm.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=compile s390x-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o readhmm_multialpha.lo readhmm_multialpha.c libtool: compile: s390x-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c readhmm_multialpha.c -fPIC -DPIC -o .libs/readhmm_multialpha.o readhmm_multialpha.c: In function ‘copy_hmm_struct’: readhmm_multialpha.c:273:34: warning: assignment to ‘struct transition_s *’ from incompatible pointer type ‘int *’ [-Wincompatible-pointer-types] 273 | retrain_hmmp->trans_tie_groups = (int*)(malloc_or_die((hmmp->nr_t + hmmp->nr_ttg) * sizeof(struct transition_s))); | ^ readhmm_multialpha.c: In function ‘readhmm_multialpha’: readhmm_multialpha.c:469:28: warning: assignment to ‘struct transition_s *’ from incompatible pointer type ‘int *’ [-Wincompatible-pointer-types] 469 | hmmp->trans_tie_groups = (int*)(malloc_or_die((hmmp->nr_t + hmmp->nr_ttg) * sizeof(struct transition_s))); | ^ readhmm_multialpha.c:326:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 326 | fgets(s, MAX_LINE, file); | ^~~~~~~~~~~~~~~~~~~~~~~~ readhmm_multialpha.c: In function ‘read_module_multi’: readhmm_multialpha.c:1042:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1042 | fgets(s, MAX_LINE, file); | ^~~~~~~~~~~~~~~~~~~~~~~~ readhmm_multialpha.c:1077:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1077 | fgets(s, MAX_LINE, file); | ^~~~~~~~~~~~~~~~~~~~~~~~ readhmm_multialpha.c:1111:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1111 | fgets(s, MAX_LINE, file); | ^~~~~~~~~~~~~~~~~~~~~~~~ readhmm_multialpha.c:1140:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1140 | fgets(s, MAX_LINE, file); | ^~~~~~~~~~~~~~~~~~~~~~~~ readhmm_multialpha.c:1143:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1143 | fgets(s, MAX_LINE, file); | ^~~~~~~~~~~~~~~~~~~~~~~~ readhmm_multialpha.c:1169:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1169 | fgets(s, MAX_LINE, file); | ^~~~~~~~~~~~~~~~~~~~~~~~ readhmm_multialpha.c:1172:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1172 | fgets(s, MAX_LINE, file); | ^~~~~~~~~~~~~~~~~~~~~~~~ readhmm_multialpha.c:1198:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1198 | fgets(s, MAX_LINE, file); | ^~~~~~~~~~~~~~~~~~~~~~~~ readhmm_multialpha.c:1202:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1202 | fgets(s, MAX_LINE, file); | ^~~~~~~~~~~~~~~~~~~~~~~~ readhmm_multialpha.c:1229:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1229 | fgets(s, MAX_LINE, file); | ^~~~~~~~~~~~~~~~~~~~~~~~ readhmm_multialpha.c:1236:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1236 | fgets(s, MAX_LINE, file); | ^~~~~~~~~~~~~~~~~~~~~~~~ libtool: compile: s390x-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c readhmm_multialpha.c -o readhmm_multialpha.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=compile s390x-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o readseqs_multialpha.lo readseqs_multialpha.c libtool: compile: s390x-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c readseqs_multialpha.c -fPIC -DPIC -o .libs/readseqs_multialpha.o readseqs_multialpha.c: In function ‘get_sequence_fasta_multi’: readseqs_multialpha.c:83:39: warning: assignment to ‘char’ from ‘char *’ makes integer from pointer without a cast [-Wint-conversion] 83 | (seq_infop->seqs + seq_nr)->name[0] = "s"; | ^ readseqs_multialpha.c: In function ‘get_sequence_std_multi’: readseqs_multialpha.c:121:55: warning: unknown escape sequence: '\s' 121 | if(line[0] == '<' || line[0] == '#' || line[0] == '\s' || line[0] == '\n' || line[0] == '/') { | ^~~~ readseqs_multialpha.c: In function ‘get_sequences_msa_std_multi’: readseqs_multialpha.c:372:18: warning: unknown escape sequence: '\s' 372 | else if(i == '\s' && i == '\n') { | ^~~~ readseqs_multialpha.c:389:22: warning: implicit declaration of function ‘read_multi_prior_file_multi’; did you mean ‘read_prior_file_multi’? [-Wimplicit-function-declaration] 389 | read_priorfile = read_multi_prior_file_multi(&em_di_1, hmmp, priorfile_a1, 1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ | read_prior_file_multi readseqs_multialpha.c: In function ‘get_sequence_std_multi’: readseqs_multialpha.c:286:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 286 | fgets(line, MAX_LINE, seqfile); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ readseqs_multialpha.c: In function ‘get_sequences_msa_std_multi’: readseqs_multialpha.c:625:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 625 | fgets(line, MAX_LINE, seqfile); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ readseqs_multialpha.c:754:2: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 754 | fgets(line, MAX_LINE, seqfile); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ readseqs_multialpha.c:874:2: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 874 | fgets(line, MAX_LINE, seqfile); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ readseqs_multialpha.c:995:2: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 995 | fgets(line, MAX_LINE, seqfile); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libtool: compile: s390x-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c readseqs_multialpha.c -o readseqs_multialpha.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=compile s390x-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o std_calculation_funcs.lo std_calculation_funcs.c libtool: compile: s390x-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c std_calculation_funcs.c -fPIC -DPIC -o .libs/std_calculation_funcs.o std_calculation_funcs.c: In function ‘update_labelings’: std_calculation_funcs.c:1295:21: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] 1295 | cur_address = (int)((cur_rowp+v)->labeling); | ^ std_calculation_funcs.c:1309:5: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] 1309 | if((int)((cur_rowp+w)->labeling) == cur_address && (cur_rowp + w)->is_updated == NO) { | ^ std_calculation_funcs.c: In function ‘deallocate_row_labelings’: std_calculation_funcs.c:1425:21: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] 1425 | cur_address = (int)((prev_rowp+v)->labeling); | ^ std_calculation_funcs.c:1430:5: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] 1430 | if((int)((prev_rowp+w)->labeling) == cur_address) { | ^ libtool: compile: s390x-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c std_calculation_funcs.c -o std_calculation_funcs.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=compile s390x-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o std_funcs.lo std_funcs.c libtool: compile: s390x-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c std_funcs.c -fPIC -DPIC -o .libs/std_funcs.o std_funcs.c: In function ‘get_replacement_letter_index_single’: std_funcs.c:683:62: warning: comparison between pointer and integer 683 | if(((replacement_letters->letters + a_index)->letter)[0] == c) { | ^~ std_funcs.c: In function ‘get_reverse_msa_seq’: std_funcs.c:2076:74: warning: assignment to ‘int *’ from ‘int’ makes pointer from integer without a cast [-Wint-conversion] 2076 | *(reverse_msa_seq_infop->gaps + (msa_seq_infop->msa_seq_length + i)) = END; | ^ std_funcs.c: In function ‘get_reverse_msa_seq_multi’: std_funcs.c:2184:74: warning: assignment to ‘int *’ from ‘int’ makes pointer from integer without a cast [-Wint-conversion] 2184 | *(reverse_msa_seq_infop->gaps + (msa_seq_infop->msa_seq_length + i)) = END; | ^ std_funcs.c: In function ‘update_shares_prior_multi’: std_funcs.c:2471:5: warning: ‘return’ with no value, in function returning non-void 2471 | return; | ^~~~~~ std_funcs.c:2457:5: note: declared here 2457 | int update_shares_prior_multi(struct emission_dirichlet_s *em_di, struct hmm_multi_s *hmmp, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/s390x-linux-gnu/include/stdio.h:867, from std_funcs.c:1: In function ‘fgets’, inlined from ‘get_nr_alphabets’ at std_funcs.c:2731:10: /usr/s390x-linux-gnu/include/bits/stdio2.h:263:9: warning: call to ‘__fgets_chk_warn’ declared with attribute warning: fgets called with bigger size than length of destination buffer [-Wattribute-warning] 263 | return __fgets_chk_warn (__s, __bos (__s), __n, __stream); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘fgets’, inlined from ‘get_nr_alphabets’ at std_funcs.c:2738:8: /usr/s390x-linux-gnu/include/bits/stdio2.h:263:9: warning: call to ‘__fgets_chk_warn’ declared with attribute warning: fgets called with bigger size than length of destination buffer [-Wattribute-warning] 263 | return __fgets_chk_warn (__s, __bos (__s), __n, __stream); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libtool: compile: s390x-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c std_funcs.c -o std_funcs.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=compile s390x-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o training_algorithms_multialpha.lo training_algorithms_multialpha.c libtool: compile: s390x-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c training_algorithms_multialpha.c -fPIC -DPIC -o .libs/training_algorithms_multialpha.o training_algorithms_multialpha.c: In function ‘msa_baum_welch_dirichlet_multi’: training_algorithms_multialpha.c:701:12: warning: assignment to ‘int’ from ‘char *’ makes integer from pointer without a cast [-Wint-conversion] 701 | alphabet = hmmp->alphabet; | ^ training_algorithms_multialpha.c:710:12: warning: assignment to ‘int’ from ‘char *’ makes integer from pointer without a cast [-Wint-conversion] 710 | alphabet = hmmp->alphabet_2; | ^ training_algorithms_multialpha.c:719:12: warning: assignment to ‘int’ from ‘char *’ makes integer from pointer without a cast [-Wint-conversion] 719 | alphabet = hmmp->alphabet_3; | ^ training_algorithms_multialpha.c:728:12: warning: assignment to ‘int’ from ‘char *’ makes integer from pointer without a cast [-Wint-conversion] 728 | alphabet = hmmp->alphabet_4; | ^ training_algorithms_multialpha.c: In function ‘extended_msa_baum_welch_dirichlet_multi’: training_algorithms_multialpha.c:1639:12: warning: assignment to ‘int’ from ‘char *’ makes integer from pointer without a cast [-Wint-conversion] 1639 | alphabet = hmmp->alphabet; | ^ training_algorithms_multialpha.c:1646:12: warning: assignment to ‘int’ from ‘char *’ makes integer from pointer without a cast [-Wint-conversion] 1646 | alphabet = hmmp->alphabet_2; | ^ training_algorithms_multialpha.c:1653:12: warning: assignment to ‘int’ from ‘char *’ makes integer from pointer without a cast [-Wint-conversion] 1653 | alphabet = hmmp->alphabet_3; | ^ training_algorithms_multialpha.c:1660:12: warning: assignment to ‘int’ from ‘char *’ makes integer from pointer without a cast [-Wint-conversion] 1660 | alphabet = hmmp->alphabet_4; | ^ training_algorithms_multialpha.c:1784:12: warning: assignment to ‘int’ from ‘char *’ makes integer from pointer without a cast [-Wint-conversion] 1784 | alphabet = hmmp->alphabet; | ^ training_algorithms_multialpha.c:1791:12: warning: assignment to ‘int’ from ‘char *’ makes integer from pointer without a cast [-Wint-conversion] 1791 | alphabet = hmmp->alphabet_2; | ^ training_algorithms_multialpha.c:1798:12: warning: assignment to ‘int’ from ‘char *’ makes integer from pointer without a cast [-Wint-conversion] 1798 | alphabet = hmmp->alphabet_3; | ^ training_algorithms_multialpha.c:1805:12: warning: assignment to ‘int’ from ‘char *’ makes integer from pointer without a cast [-Wint-conversion] 1805 | alphabet = hmmp->alphabet_4; | ^ training_algorithms_multialpha.c: In function ‘add_to_E_multi’: training_algorithms_multialpha.c:3564:5: warning: implicit declaration of function ‘add_to_E_continuous’ [-Wimplicit-function-declaration] 3564 | add_to_E_continuous(E, Eka_base, msa_seq, p, k, a_size, emissions); | ^~~~~~~~~~~~~~~~~~~ training_algorithms_multialpha.c:3589:8: warning: passing argument 9 of ‘add_to_E_subst_mtx_dot_product_nr_occ’ makes pointer from integer without a cast [-Wint-conversion] 3589 | alphabet); | ^~~~~~~~ | | | int In file included from training_algorithms_multialpha.c:10: funcs.h:257:68: note: expected ‘char *’ but argument is of type ‘int’ 257 | int k, int a_size, int normalize, double *subst_mtx, char *alphabet); | ~~~~~~^~~~~~~~ training_algorithms_multialpha.c:3593:7: warning: passing argument 9 of ‘add_to_E_subst_mtx_dot_product_prior_nr_occ’ makes pointer from integer without a cast [-Wint-conversion] 3593 | alphabet); | ^~~~~~~~ | | | int In file included from training_algorithms_multialpha.c:10: funcs.h:259:67: note: expected ‘char *’ but argument is of type ‘int’ 259 | int k, int a_size, int normalize, double *subst_mtx, char *alphabet); | ~~~~~~^~~~~~~~ training_algorithms_multialpha.c:3618:8: warning: passing argument 9 of ‘add_to_E_subst_mtx_dot_product’ makes pointer from integer without a cast [-Wint-conversion] 3618 | alphabet); | ^~~~~~~~ | | | int In file included from training_algorithms_multialpha.c:10: funcs.h:238:68: note: expected ‘char *’ but argument is of type ‘int’ 238 | int k, int a_size, int normalize, double *subst_mtx, char *alphabet); | ~~~~~~^~~~~~~~ training_algorithms_multialpha.c:3622:7: warning: passing argument 9 of ‘add_to_E_subst_mtx_dot_product_prior’ makes pointer from integer without a cast [-Wint-conversion] 3622 | alphabet); | ^~~~~~~~ | | | int In file included from training_algorithms_multialpha.c:10: funcs.h:240:67: note: expected ‘char *’ but argument is of type ‘int’ 240 | int k, int a_size, int normalize, double *subst_mtx, char *alphabet); | ~~~~~~^~~~~~~~ libtool: compile: s390x-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c training_algorithms_multialpha.c -o training_algorithms_multialpha.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=link s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -version-info 0:0:0 -Wl,-z,relro -Wl,-z,now -o libmodhmm.la -rpath /usr/lib/s390x-linux-gnu core_algorithms_multialpha.lo debug_funcs.lo hmmsearch.lo readhmm.lo readhmm_multialpha.lo readseqs_multialpha.lo std_calculation_funcs.lo std_funcs.lo training_algorithms_multialpha.lo -lm libtool: link: s390x-linux-gnu-gcc -shared -fPIC -DPIC .libs/core_algorithms_multialpha.o .libs/debug_funcs.o .libs/hmmsearch.o .libs/readhmm.o .libs/readhmm_multialpha.o .libs/readseqs_multialpha.o .libs/std_calculation_funcs.o .libs/std_funcs.o .libs/training_algorithms_multialpha.o -lm -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,libmodhmm.so.0 -o .libs/libmodhmm.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libmodhmm.so.0" && ln -s "libmodhmm.so.0.0.0" "libmodhmm.so.0") libtool: link: (cd ".libs" && rm -f "libmodhmm.so" && ln -s "libmodhmm.so.0.0.0" "libmodhmm.so") libtool: link: s390x-linux-gnu-ar cr .libs/libmodhmm.a core_algorithms_multialpha.o debug_funcs.o hmmsearch.o readhmm.o readhmm_multialpha.o readseqs_multialpha.o std_calculation_funcs.o std_funcs.o training_algorithms_multialpha.o libtool: link: s390x-linux-gnu-ranlib .libs/libmodhmm.a libtool: link: ( cd ".libs" && rm -f "libmodhmm.la" && ln -s "../libmodhmm.la" "libmodhmm.la" ) make[3]: Leaving directory '/<>/modhmm0.92b' make[3]: Entering directory '/<>' make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' dh_auto_test -a create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh binary-arch dh_testroot -a dh_prep -a debian/rules override_dh_auto_install make[1]: Entering directory '/<>' dh_auto_install make -j1 install DESTDIR=/<>/libpsortb-1.0\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no make[2]: Entering directory '/<>' Making install in svmloc make[3]: Entering directory '/<>/svmloc' make[4]: Entering directory '/<>/svmloc' /bin/mkdir -p '/<>/debian/tmp/usr/lib/s390x-linux-gnu' /bin/bash ../libtool --mode=install /usr/bin/install -c libsvmloc.la '/<>/debian/tmp/usr/lib/s390x-linux-gnu' libtool: install: /usr/bin/install -c .libs/libsvmloc.so.0.0.0 /<>/debian/tmp/usr/lib/s390x-linux-gnu/libsvmloc.so.0.0.0 libtool: install: (cd /<>/debian/tmp/usr/lib/s390x-linux-gnu && { ln -s -f libsvmloc.so.0.0.0 libsvmloc.so.0 || { rm -f libsvmloc.so.0 && ln -s libsvmloc.so.0.0.0 libsvmloc.so.0; }; }) libtool: install: (cd /<>/debian/tmp/usr/lib/s390x-linux-gnu && { ln -s -f libsvmloc.so.0.0.0 libsvmloc.so || { rm -f libsvmloc.so && ln -s libsvmloc.so.0.0.0 libsvmloc.so; }; }) libtool: install: /usr/bin/install -c .libs/libsvmloc.lai /<>/debian/tmp/usr/lib/s390x-linux-gnu/libsvmloc.la libtool: install: /usr/bin/install -c .libs/libsvmloc.a /<>/debian/tmp/usr/lib/s390x-linux-gnu/libsvmloc.a libtool: install: chmod 644 /<>/debian/tmp/usr/lib/s390x-linux-gnu/libsvmloc.a libtool: install: s390x-linux-gnu-ranlib /<>/debian/tmp/usr/lib/s390x-linux-gnu/libsvmloc.a libtool: warning: remember to run 'libtool --finish /usr/lib/s390x-linux-gnu' make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/svmloc' make[3]: Leaving directory '/<>/svmloc' Making install in modhmm0.92b make[3]: Entering directory '/<>/modhmm0.92b' make[4]: Entering directory '/<>/modhmm0.92b' /bin/mkdir -p '/<>/debian/tmp/usr/lib/s390x-linux-gnu' /bin/bash ../libtool --mode=install /usr/bin/install -c libmodhmm.la '/<>/debian/tmp/usr/lib/s390x-linux-gnu' libtool: install: /usr/bin/install -c .libs/libmodhmm.so.0.0.0 /<>/debian/tmp/usr/lib/s390x-linux-gnu/libmodhmm.so.0.0.0 libtool: install: (cd /<>/debian/tmp/usr/lib/s390x-linux-gnu && { ln -s -f libmodhmm.so.0.0.0 libmodhmm.so.0 || { rm -f libmodhmm.so.0 && ln -s libmodhmm.so.0.0.0 libmodhmm.so.0; }; }) libtool: install: (cd /<>/debian/tmp/usr/lib/s390x-linux-gnu && { ln -s -f libmodhmm.so.0.0.0 libmodhmm.so || { rm -f libmodhmm.so && ln -s libmodhmm.so.0.0.0 libmodhmm.so; }; }) libtool: install: /usr/bin/install -c .libs/libmodhmm.lai /<>/debian/tmp/usr/lib/s390x-linux-gnu/libmodhmm.la libtool: install: /usr/bin/install -c .libs/libmodhmm.a /<>/debian/tmp/usr/lib/s390x-linux-gnu/libmodhmm.a libtool: install: chmod 644 /<>/debian/tmp/usr/lib/s390x-linux-gnu/libmodhmm.a libtool: install: s390x-linux-gnu-ranlib /<>/debian/tmp/usr/lib/s390x-linux-gnu/libmodhmm.a libtool: warning: remember to run 'libtool --finish /usr/lib/s390x-linux-gnu' make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/modhmm0.92b' make[3]: Leaving directory '/<>/modhmm0.92b' make[3]: Entering directory '/<>' make[4]: Entering directory '/<>' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>' make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' d-shlibmove --commit \ --multiarch \ --devunversioned \ --exclude-la \ debian/tmp/usr/lib/*/libmodhmm.so Library package automatic movement utility set -e install -d -m 755 debian/libmodhmm-dev/usr/lib/s390x-linux-gnu install -d -m 755 debian/libmodhmm0/usr/lib/s390x-linux-gnu mv debian/tmp/usr/lib/s390x-linux-gnu/libmodhmm.a debian/libmodhmm-dev/usr/lib/s390x-linux-gnu mv debian/tmp/usr/lib/s390x-linux-gnu/libmodhmm.so debian/libmodhmm-dev/usr/lib/s390x-linux-gnu mv /<>/debian/tmp/usr/lib/s390x-linux-gnu/libmodhmm.so.0 debian/libmodhmm0/usr/lib/s390x-linux-gnu mv /<>/debian/tmp/usr/lib/s390x-linux-gnu/libmodhmm.so.0.0.0 debian/libmodhmm0/usr/lib/s390x-linux-gnu PKGDEV=libmodhmm-dev PKGSHL=libmodhmm0 d-shlibmove --commit \ --multiarch \ --devunversioned \ --exclude-la \ --override s/libsvm3-dev/libsvm-dev/ \ debian/tmp/usr/lib/*/libsvmloc.so Library package automatic movement utility --> libsvm-dev package exists. set -e install -d -m 755 debian/libsvmloc-dev/usr/lib/s390x-linux-gnu install -d -m 755 debian/libsvmloc0/usr/lib/s390x-linux-gnu mv debian/tmp/usr/lib/s390x-linux-gnu/libsvmloc.a debian/libsvmloc-dev/usr/lib/s390x-linux-gnu mv debian/tmp/usr/lib/s390x-linux-gnu/libsvmloc.so debian/libsvmloc-dev/usr/lib/s390x-linux-gnu mv /<>/debian/tmp/usr/lib/s390x-linux-gnu/libsvmloc.so.0 debian/libsvmloc0/usr/lib/s390x-linux-gnu mv /<>/debian/tmp/usr/lib/s390x-linux-gnu/libsvmloc.so.0.0.0 debian/libsvmloc0/usr/lib/s390x-linux-gnu PKGDEV=libsvmloc-dev PKGSHL=libsvmloc0 make[1]: Leaving directory '/<>' dh_installdocs -a dh_installchangelogs -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'libmodhmm0' in '../libmodhmm0_1.0+dfsg-3_s390x.deb'. dpkg-deb: building package 'libmodhmm0-dbgsym' in '../libmodhmm0-dbgsym_1.0+dfsg-3_s390x.deb'. dpkg-deb: building package 'libmodhmm-dev' in '../libmodhmm-dev_1.0+dfsg-3_s390x.deb'. dpkg-deb: building package 'libsvmloc0' in '../libsvmloc0_1.0+dfsg-3_s390x.deb'. dpkg-deb: building package 'libsvmloc0-dbgsym' in '../libsvmloc0-dbgsym_1.0+dfsg-3_s390x.deb'. dpkg-deb: building package 'libsvmloc-dev' in '../libsvmloc-dev_1.0+dfsg-3_s390x.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any >../libpsortb_1.0+dfsg-3_s390x.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2020-11-28T20:51:23Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ libpsortb_1.0+dfsg-3_s390x.changes: ----------------------------------- Format: 1.8 Date: Sat, 05 Jan 2019 04:48:35 -0800 Source: libpsortb Binary: libmodhmm-dev libmodhmm0 libmodhmm0-dbgsym libsvmloc-dev libsvmloc0 libsvmloc0-dbgsym Built-For-Profiles: cross nocheck Architecture: s390x Version: 1.0+dfsg-3 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Michael R. Crusoe Description: libmodhmm-dev - library for constructing, training and scoring hidden Markov mode libmodhmm0 - library for constructing, training and scoring hidden Markov mode libsvmloc-dev - PSORTb adapted library for svm machine-learning library (dev) libsvmloc0 - PSORTb adapted library for svm machine-learning library Changes: libpsortb (1.0+dfsg-3) unstable; urgency=medium . * Team upload. * libsvmloc*: Correctly link against libsvm * Add Multi-Arch: same to all binary packages, as suggested by the Multiarch hinter. * debian/watch: http→https Checksums-Sha1: dd799b13e2d463cc45cd641d2df89a918d3b624a 71476 libmodhmm-dev_1.0+dfsg-3_s390x.deb e22ace815cd209e588af863abb3468bbe44eae1a 236284 libmodhmm0-dbgsym_1.0+dfsg-3_s390x.deb 770695cc2ca9d6b55317d5d2109e19f8b16a2c05 70144 libmodhmm0_1.0+dfsg-3_s390x.deb f9bb712a44686b10b886cd14dabf996a9de689e4 6719 libpsortb_1.0+dfsg-3_s390x.buildinfo a50939e0c1d6b7b620751962ad2e9efc1394415e 11848 libsvmloc-dev_1.0+dfsg-3_s390x.deb 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9b13756d138995920ffc3d795b2df236d516e2feb8099aa08f878edeb3a4c1bc 71476 libmodhmm-dev_1.0+dfsg-3_s390x.deb 10772557aeeb5ca60a25c1c50e0fbb5843bc8a9323ceab30400bc2c487d0c548 236284 libmodhmm0-dbgsym_1.0+dfsg-3_s390x.deb cbf04baa9328d8a571674a4de1b6191ad33ea4836d5c2820c29f20ad2d1c04d0 70144 libmodhmm0_1.0+dfsg-3_s390x.deb aef3861248c36ed25291c567a15a7d45682cf58941bd887bb395a18e609a0fcc 11848 libsvmloc-dev_1.0+dfsg-3_s390x.deb bc4997f8447ef384b03e57db29c50c0cbeadb1609c50332509a6b4c51fec4192 103876 libsvmloc0-dbgsym_1.0+dfsg-3_s390x.deb 12b06d03e1793854fd454364bc45db7e3a653232953b5954a528c771f62be770 12772 libsvmloc0_1.0+dfsg-3_s390x.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Sat, 28 Nov 2020 20:51:23 +0000 Build-Path: /<> Installed-Build-Depends: adduser (= 3.118), apt (= 2.1.12), autoconf (= 2.69-11.1), automake (= 1:1.16.2-4), autopoint (= 0.19.8.1-10), autotools-dev (= 20180224.1), base-files (= 11), base-passwd (= 3.5.48), bash (= 5.1~rc3-1), binutils (= 2.35.1-3), binutils-common (= 2.35.1-3), binutils-x86-64-linux-gnu (= 2.35.1-3), bsdextrautils (= 2.36.1-2), bsdutils (= 1:2.36.1-2), build-essential (= 12.8), bzip2 (= 1.0.8-4), coreutils (= 8.32-4+b1), cpp (= 4:10.2.0-1), cpp-10 (= 10.2.0-19), d-shlibs (= 0.95), dash (= 0.5.11+git20200708+dd9ef66-2), debconf (= 1.5.74), debhelper (= 13.2.1), debian-archive-keyring (= 2019.1), debianutils (= 4.11.2), dh-autoreconf (= 19), dh-strip-nondeterminism (= 1.9.0-1), diffutils (= 1:3.7-3), dpkg (= 1.20.5), dpkg-dev (= 1.20.5), dwz (= 0.13-5), file (= 1:5.39-3), findutils (= 4.7.0+git20201010-2), g++ (= 4:10.2.0-1), g++-10 (= 10.2.0-19), gcc (= 4:10.2.0-1), gcc-10 (= 10.2.0-19), gcc-10-base (= 10.2.0-19), gettext (= 0.19.8.1-10), gettext-base (= 0.19.8.1-10), gpgv (= 2.2.20-1), grep (= 3.6-1), groff-base (= 1.22.4-5), gzip (= 1.10-2), hostname (= 3.23), init-system-helpers (= 1.59), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.2.53-8), libapt-pkg6.0 (= 2.1.12), libarchive-zip-perl (= 1.68-1), libasan6 (= 10.2.0-19), libatomic1 (= 10.2.0-19), libattr1 (= 1:2.4.48-5), libaudit-common (= 1:2.8.5-3.1), libaudit1 (= 1:2.8.5-3.1), libbinutils (= 2.35.1-3), libblkid1 (= 2.36.1-2), libbz2-1.0 (= 1.0.8-4), libc-bin (= 2.31-4), libc-dev-bin (= 2.31-4), libc6 (= 2.31-4), libc6-dev (= 2.31-4), libcap-ng0 (= 0.7.9-2.2+b1), libcc1-0 (= 10.2.0-19), libcom-err2 (= 1.45.6-1), libcroco3 (= 0.6.13-1), libcrypt-dev (= 1:4.4.17-1), libcrypt1 (= 1:4.4.17-1), libctf-nobfd0 (= 2.35.1-3), libctf0 (= 2.35.1-3), libdb5.3 (= 5.3.28+dfsg1-0.6), libdebconfclient0 (= 0.255), libdebhelper-perl (= 13.2.1), libdpkg-perl (= 1.20.5), libelf1 (= 0.182-1), libffi7 (= 3.3-5), libfile-stripnondeterminism-perl (= 1.9.0-1), libgcc-10-dev (= 10.2.0-19), libgcc-s1 (= 10.2.0-19), libgcrypt20 (= 1.8.7-2), libgdbm-compat4 (= 1.18.1-5.1), libgdbm6 (= 1.18.1-5.1), libglib2.0-0 (= 2.66.3-1), libgmp10 (= 2:6.2.1+dfsg-1), libgnutls30 (= 3.6.15-4), libgomp1 (= 10.2.0-19), libgpg-error0 (= 1.38-2), libgssapi-krb5-2 (= 1.18.3-4), libhmmer2-dev (= 2.3.2+dfsg-7), libhogweed6 (= 3.6-2), libicu67 (= 67.1-4), libidn2-0 (= 2.3.0-4), libisl23 (= 0.23-1), libitm1 (= 10.2.0-19), libk5crypto3 (= 1.18.3-4), libkeyutils1 (= 1.6.1-2), libkrb5-3 (= 1.18.3-4), libkrb5support0 (= 1.18.3-4), liblsan0 (= 10.2.0-19), liblz4-1 (= 1.9.2-2), liblzma5 (= 5.2.4-1+b1), libmagic-mgc (= 1:5.39-3), libmagic1 (= 1:5.39-3), libmount1 (= 2.36.1-2), libmpc3 (= 1.2.0-1), libmpfr6 (= 4.1.0-3), libnettle8 (= 3.6-2), libnsl-dev (= 1.3.0-2), libnsl2 (= 1.3.0-2), libnss-nis (= 3.1-4), libnss-nisplus (= 1.3-4), libp11-kit0 (= 0.23.21-2), libpam-modules (= 1.3.1-5), libpam-modules-bin (= 1.3.1-5), libpam-runtime (= 1.3.1-5), libpam0g (= 1.3.1-5), libpcre2-8-0 (= 10.34-7), libpcre3 (= 2:8.39-13), libperl5.32 (= 5.32.0-5), libpipeline1 (= 1.5.3-1), libquadmath0 (= 10.2.0-19), libseccomp2 (= 2.5.0-3), libselinux1 (= 3.1-2+b1), libsemanage-common (= 3.1-1), libsemanage1 (= 3.1-1+b1), libsepol1 (= 3.1-1), libsigsegv2 (= 2.12-2), libsmartcols1 (= 2.36.1-2), libsquid-dev (= 1.9g+cvs20050121-12), libsquid1 (= 1.9g+cvs20050121-12), libssl1.1 (= 1.1.1h-1), libstdc++-10-dev (= 10.2.0-19), libstdc++6 (= 10.2.0-19), libsub-override-perl (= 0.09-2), libsvm-dev (= 3.24+ds-6), libsvm3 (= 3.24+ds-6), libsystemd0 (= 246.6-5), libtasn1-6 (= 4.16.0-2), libtinfo6 (= 6.2+20201114-1), libtirpc-common (= 1.2.6-3), libtirpc-dev (= 1.2.6-3), libtirpc3 (= 1.2.6-3), libtool (= 2.4.6-14), libtsan0 (= 10.2.0-19), libubsan1 (= 10.2.0-19), libuchardet0 (= 0.0.7-1), libudev1 (= 246.6-5), libunistring2 (= 0.9.10-4), libuuid1 (= 2.36.1-2), libxml2 (= 2.9.10+dfsg-6.2), libzstd1 (= 1.4.5+dfsg-4), linux-libc-dev (= 5.9.11-1), login (= 1:4.8.1-1), lsb-base (= 11.1.0), m4 (= 1.4.18-4), make (= 4.3-4), man-db (= 2.9.3-2), mawk (= 1.3.4.20200120-2), ncurses-base (= 6.2+20201114-1), ncurses-bin (= 6.2+20201114-1), passwd (= 1:4.8.1-1), patch (= 2.7.6-6), perl (= 5.32.0-5), perl-base (= 5.32.0-5), perl-modules-5.32 (= 5.32.0-5), pkg-config (= 0.29.2-1), po-debconf (= 1.0.21), sed (= 4.7-1), sensible-utils (= 0.0.12+nmu1), sysvinit-utils (= 2.96-5), tar (= 1.32+dfsg-1), util-linux (= 2.36.1-2), xz-utils (= 5.2.4-1+b1), zlib1g (= 1:1.2.11.dfsg-2) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="en_US.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1546692515" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ libmodhmm-dev_1.0+dfsg-3_s390x.deb ---------------------------------- new Debian package, version 2.0. size 71476 bytes: control archive=992 bytes. 1027 bytes, 24 lines control 299 bytes, 4 lines md5sums Package: libmodhmm-dev Source: libpsortb Version: 1.0+dfsg-3 Architecture: s390x Maintainer: Debian Med Packaging Team Installed-Size: 347 Depends: libmodhmm0 (= 1.0+dfsg-3) Section: libdevel Priority: optional Multi-Arch: same Homepage: http://www.psort.org/ Description: library for constructing, training and scoring hidden Markov models (dev) Library for constructing, training and scoring hidden Markov models. It is provided with PSORTb but might be used separately. . PSORTb enables prediction of bacterial protein subcellular localization (SCL) and provides a quick and inexpensive means for gaining insight into protein function, verifying experimental results, annotating newly sequenced bacterial genomes, detecting potential cell surface/secreted drug targets, as well as identifying biomarkers for microbes. . This library needed by PSORTb is distributed separately by upstream. . This package contains the static library which is needed to link PSORTb. drwxr-xr-x root/root 0 2019-01-05 12:48 ./ drwxr-xr-x root/root 0 2019-01-05 12:48 ./usr/ drwxr-xr-x root/root 0 2019-01-05 12:48 ./usr/lib/ drwxr-xr-x root/root 0 2019-01-05 12:48 ./usr/lib/s390x-linux-gnu/ -rw-r--r-- root/root 341846 2019-01-05 12:48 ./usr/lib/s390x-linux-gnu/libmodhmm.a lrwxrwxrwx root/root 0 2019-01-05 12:48 ./usr/lib/s390x-linux-gnu/libmodhmm.so -> libmodhmm.so.0.0.0 drwxr-xr-x root/root 0 2019-01-05 12:48 ./usr/share/ drwxr-xr-x root/root 0 2019-01-05 12:48 ./usr/share/doc/ drwxr-xr-x root/root 0 2019-01-05 12:48 ./usr/share/doc/libmodhmm-dev/ -rw-r--r-- root/root 415 2019-01-05 12:48 ./usr/share/doc/libmodhmm-dev/changelog.Debian.gz -rw-r--r-- root/root 59 2008-08-14 16:47 ./usr/share/doc/libmodhmm-dev/changelog.gz -rw-r--r-- root/root 1416 2019-01-04 18:43 ./usr/share/doc/libmodhmm-dev/copyright libmodhmm0-dbgsym_1.0+dfsg-3_s390x.deb -------------------------------------- new Debian package, version 2.0. size 236284 bytes: control archive=560 bytes. 404 bytes, 13 lines control 106 bytes, 1 lines md5sums Package: libmodhmm0-dbgsym Source: libpsortb Version: 1.0+dfsg-3 Auto-Built-Package: debug-symbols Architecture: s390x Maintainer: Debian Med Packaging Team Installed-Size: 254 Depends: libmodhmm0 (= 1.0+dfsg-3) Section: debug Priority: optional Multi-Arch: same Description: debug symbols for libmodhmm0 Build-Ids: 88a756d310c5441a33fa753792bda2804a300cea drwxr-xr-x root/root 0 2019-01-05 12:48 ./ drwxr-xr-x root/root 0 2019-01-05 12:48 ./usr/ drwxr-xr-x root/root 0 2019-01-05 12:48 ./usr/lib/ drwxr-xr-x root/root 0 2019-01-05 12:48 ./usr/lib/debug/ drwxr-xr-x root/root 0 2019-01-05 12:48 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2019-01-05 12:48 ./usr/lib/debug/.build-id/88/ -rw-r--r-- root/root 249168 2019-01-05 12:48 ./usr/lib/debug/.build-id/88/a756d310c5441a33fa753792bda2804a300cea.debug drwxr-xr-x root/root 0 2019-01-05 12:48 ./usr/share/ drwxr-xr-x root/root 0 2019-01-05 12:48 ./usr/share/doc/ lrwxrwxrwx root/root 0 2019-01-05 12:48 ./usr/share/doc/libmodhmm0-dbgsym -> libmodhmm0 libmodhmm0_1.0+dfsg-3_s390x.deb ------------------------------- new Debian package, version 2.0. size 70144 bytes: control archive=1076 bytes. 1003 bytes, 24 lines control 297 bytes, 4 lines md5sums 23 bytes, 1 lines shlibs 67 bytes, 2 lines triggers Package: libmodhmm0 Source: libpsortb Version: 1.0+dfsg-3 Architecture: s390x Maintainer: Debian Med Packaging Team Installed-Size: 241 Depends: libc6 (>= 2.29) Section: libs Priority: optional Multi-Arch: same Homepage: http://www.psort.org/ Description: library for constructing, training and scoring hidden Markov models Library for constructing, training and scoring hidden Markov models. It is provided with PSORTb but might be used separately. . PSORTb enables prediction of bacterial protein subcellular localization (SCL) and provides a quick and inexpensive means for gaining insight into protein function, verifying experimental results, annotating newly sequenced bacterial genomes, detecting potential cell surface/secreted drug targets, as well as identifying biomarkers for microbes. . This library needed by PSORTb is distributed separately by upstream. . This package contains the shared library which is needed to run PSORTb. drwxr-xr-x root/root 0 2019-01-05 12:48 ./ drwxr-xr-x root/root 0 2019-01-05 12:48 ./usr/ drwxr-xr-x root/root 0 2019-01-05 12:48 ./usr/lib/ drwxr-xr-x root/root 0 2019-01-05 12:48 ./usr/lib/s390x-linux-gnu/ lrwxrwxrwx root/root 0 2019-01-05 12:48 ./usr/lib/s390x-linux-gnu/libmodhmm.so.0 -> libmodhmm.so.0.0.0 -rw-r--r-- root/root 231184 2019-01-05 12:48 ./usr/lib/s390x-linux-gnu/libmodhmm.so.0.0.0 drwxr-xr-x root/root 0 2019-01-05 12:48 ./usr/share/ drwxr-xr-x root/root 0 2019-01-05 12:48 ./usr/share/doc/ drwxr-xr-x root/root 0 2019-01-05 12:48 ./usr/share/doc/libmodhmm0/ -rw-r--r-- root/root 415 2019-01-05 12:48 ./usr/share/doc/libmodhmm0/changelog.Debian.gz -rw-r--r-- root/root 59 2008-08-14 16:47 ./usr/share/doc/libmodhmm0/changelog.gz -rw-r--r-- root/root 1416 2019-01-04 18:43 ./usr/share/doc/libmodhmm0/copyright libsvmloc-dev_1.0+dfsg-3_s390x.deb ---------------------------------- new Debian package, version 2.0. size 11848 bytes: control archive=1120 bytes. 1287 bytes, 30 lines control 299 bytes, 4 lines md5sums Package: libsvmloc-dev Source: libpsortb Version: 1.0+dfsg-3 Architecture: s390x Maintainer: Debian Med Packaging Team Installed-Size: 46 Depends: libsvmloc0 (= 1.0+dfsg-3), libsvm-dev Section: libdevel Priority: optional Multi-Arch: same Homepage: http://www.psort.org/ Description: PSORTb adapted library for svm machine-learning library (dev) Libsvm is a machine-learning library which is an easy-to-use package for support vector classification, regression and one-class SVM. It supports multi-class classification, probability outputs, and parameter selection. . PSORTb was featuring a code copy plus some local additions. This library is linked against the Debian packaged libsvn and just contains the PSORTb extensions. . PSORTb enables prediction of bacterial protein subcellular localization (SCL) and provides a quick and inexpensive means for gaining insight into protein function, verifying experimental results, annotating newly sequenced bacterial genomes, detecting potential cell surface/secreted drug targets, as well as identifying biomarkers for microbes. . This library needed by PSORTb is distributed separately by upstream. . This package contains the static library which is needed to link PSORTb. drwxr-xr-x root/root 0 2019-01-05 12:48 ./ drwxr-xr-x root/root 0 2019-01-05 12:48 ./usr/ drwxr-xr-x root/root 0 2019-01-05 12:48 ./usr/lib/ drwxr-xr-x root/root 0 2019-01-05 12:48 ./usr/lib/s390x-linux-gnu/ -rw-r--r-- root/root 33160 2019-01-05 12:48 ./usr/lib/s390x-linux-gnu/libsvmloc.a lrwxrwxrwx root/root 0 2019-01-05 12:48 ./usr/lib/s390x-linux-gnu/libsvmloc.so -> libsvmloc.so.0.0.0 drwxr-xr-x root/root 0 2019-01-05 12:48 ./usr/share/ drwxr-xr-x root/root 0 2019-01-05 12:48 ./usr/share/doc/ drwxr-xr-x root/root 0 2019-01-05 12:48 ./usr/share/doc/libsvmloc-dev/ -rw-r--r-- root/root 415 2019-01-05 12:48 ./usr/share/doc/libsvmloc-dev/changelog.Debian.gz -rw-r--r-- root/root 59 2008-08-14 16:47 ./usr/share/doc/libsvmloc-dev/changelog.gz -rw-r--r-- root/root 1416 2019-01-04 18:43 ./usr/share/doc/libsvmloc-dev/copyright libsvmloc0-dbgsym_1.0+dfsg-3_s390x.deb -------------------------------------- new Debian package, version 2.0. size 103876 bytes: control archive=560 bytes. 404 bytes, 13 lines control 106 bytes, 1 lines md5sums Package: libsvmloc0-dbgsym Source: libpsortb Version: 1.0+dfsg-3 Auto-Built-Package: debug-symbols Architecture: s390x Maintainer: Debian Med Packaging Team Installed-Size: 119 Depends: libsvmloc0 (= 1.0+dfsg-3) Section: debug Priority: optional Multi-Arch: same Description: debug symbols for libsvmloc0 Build-Ids: b66935a731177f675b8ef4c28c73fd9f4f9b7b22 drwxr-xr-x root/root 0 2019-01-05 12:48 ./ drwxr-xr-x root/root 0 2019-01-05 12:48 ./usr/ drwxr-xr-x root/root 0 2019-01-05 12:48 ./usr/lib/ drwxr-xr-x root/root 0 2019-01-05 12:48 ./usr/lib/debug/ drwxr-xr-x root/root 0 2019-01-05 12:48 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2019-01-05 12:48 ./usr/lib/debug/.build-id/b6/ -rw-r--r-- root/root 110856 2019-01-05 12:48 ./usr/lib/debug/.build-id/b6/6935a731177f675b8ef4c28c73fd9f4f9b7b22.debug drwxr-xr-x root/root 0 2019-01-05 12:48 ./usr/share/ drwxr-xr-x root/root 0 2019-01-05 12:48 ./usr/share/doc/ lrwxrwxrwx root/root 0 2019-01-05 12:48 ./usr/share/doc/libsvmloc0-dbgsym -> libsvmloc0 libsvmloc0_1.0+dfsg-3_s390x.deb ------------------------------- new Debian package, version 2.0. size 12772 bytes: control archive=1244 bytes. 1312 bytes, 30 lines control 297 bytes, 4 lines md5sums 23 bytes, 1 lines shlibs 67 bytes, 2 lines triggers Package: libsvmloc0 Source: libpsortb Version: 1.0+dfsg-3 Architecture: s390x Maintainer: Debian Med Packaging Team Installed-Size: 45 Depends: libsvm3 (>= 3.21+ds), libc6 (>= 2.4), libgcc-s1 (>= 3.0), libstdc++6 (>= 5.2) Section: libs Priority: optional Multi-Arch: same Homepage: http://www.psort.org/ Description: PSORTb adapted library for svm machine-learning library Libsvm is a machine-learning library which is an easy-to-use package for support vector classification, regression and one-class SVM. It supports multi-class classification, probability outputs, and parameter selection. . PSORTb was featuring a code copy plus some local additions. This library is linked against the Debian packaged libsvn and just contains the PSORTb extensions. . PSORTb enables prediction of bacterial protein subcellular localization (SCL) and provides a quick and inexpensive means for gaining insight into protein function, verifying experimental results, annotating newly sequenced bacterial genomes, detecting potential cell surface/secreted drug targets, as well as identifying biomarkers for microbes. . This library needed by PSORTb is distributed separately by upstream. . This package contains the shared library which is needed to run PSORb. drwxr-xr-x root/root 0 2019-01-05 12:48 ./ drwxr-xr-x root/root 0 2019-01-05 12:48 ./usr/ drwxr-xr-x root/root 0 2019-01-05 12:48 ./usr/lib/ drwxr-xr-x root/root 0 2019-01-05 12:48 ./usr/lib/s390x-linux-gnu/ lrwxrwxrwx root/root 0 2019-01-05 12:48 ./usr/lib/s390x-linux-gnu/libsvmloc.so.0 -> libsvmloc.so.0.0.0 -rw-r--r-- root/root 30648 2019-01-05 12:48 ./usr/lib/s390x-linux-gnu/libsvmloc.so.0.0.0 drwxr-xr-x root/root 0 2019-01-05 12:48 ./usr/share/ drwxr-xr-x root/root 0 2019-01-05 12:48 ./usr/share/doc/ drwxr-xr-x root/root 0 2019-01-05 12:48 ./usr/share/doc/libsvmloc0/ -rw-r--r-- root/root 415 2019-01-05 12:48 ./usr/share/doc/libsvmloc0/changelog.Debian.gz -rw-r--r-- root/root 59 2008-08-14 16:47 ./usr/share/doc/libsvmloc0/changelog.gz -rw-r--r-- root/root 1416 2019-01-04 18:43 ./usr/share/doc/libsvmloc0/copyright lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:amd64 Filtered Build-Depends: lintian:amd64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/apt_archive/sbuild-build-depends-lintian-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [963 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [563 B] Get:5 copy:/<>/apt_archive ./ Packages [650 B] Fetched 2176 B in 0s (86.6 kB/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: diffstat gpg gpgconf libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libcapture-tiny-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libexception-class-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfont-ttf-perl libhtml-html5-entities-perl libimport-into-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-moreutils-perl liblist-utilsby-perl liblzo2-2 libmarkdown2 libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libproc-processtable-perl libreadline8 librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsqlite3-0 libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libtype-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libyaml-0-2 libyaml-libyaml-perl lintian lzip lzop patchutils readline-common t1utils unzip Suggested packages: libxml-parser-perl libscalar-number-perl libbareword-filehandles-perl libindirect-perl libmultidimensional-perl libdevel-lexalias-perl libwww-perl binutils-multiarch libtext-template-perl readline-doc zip Recommended packages: gnupg libpackage-stash-xs-perl libref-util-perl libtype-tiny-xs-perl The following NEW packages will be installed: diffstat gpg gpgconf libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libcapture-tiny-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libexception-class-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfont-ttf-perl libhtml-html5-entities-perl libimport-into-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-moreutils-perl liblist-utilsby-perl liblzo2-2 libmarkdown2 libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libproc-processtable-perl libreadline8 librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsqlite3-0 libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libtype-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libyaml-0-2 libyaml-libyaml-perl lintian lzip lzop patchutils readline-common sbuild-build-depends-lintian-dummy:s390x t1utils unzip 0 upgraded, 89 newly installed, 0 to remove and 0 not upgraded. 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Setting up libtimedate-perl (2.3300-1) ... Setting up libsub-name-perl (0.26-1+b1) ... Setting up libdata-validate-domain-perl (0.10-1) ... Setting up libproc-processtable-perl (0.59-2+b1) ... Setting up libpath-tiny-perl (0.114-1) ... Setting up lzop (1.04-2) ... Setting up librole-tiny-perl (2.001004-1) ... Setting up libipc-run3-perl (0.048-2) ... Setting up libaliased-perl (0.34-1) ... Setting up libstrictures-perl (2.000006-1) ... Setting up libsub-quote-perl (2.006006-1) ... Setting up libdevel-stacktrace-perl (2.0400-1) ... Setting up libclass-xsaccessor-perl (1.19-3+b6) ... Setting up libexporter-tiny-perl (1.002002-1) ... Setting up libfont-ttf-perl (1.06-1) ... Setting up libtext-levenshteinxs-perl (0.03-4+b8) ... Setting up libperlio-gzip-perl (0.19-1+b7) ... Setting up readline-common (8.1~rc3-1) ... Setting up libhtml-html5-entities-perl (0.004-1) ... Setting up libsereal-decoder-perl (4.018+ds-1+b1) ... Setting up libmarkdown2:amd64 (2.2.6-1) ... Setting up liburi-perl (5.05-1) ... Setting up libemail-address-xs-perl (1.04-1+b3) ... Setting up libfile-basedir-perl (0.08-1) ... Setting up liblist-moreutils-perl (0.416-1+b6) ... Setting up libreadline8:amd64 (8.1~rc3-1) ... Setting up libtype-tiny-perl (1.012000-1) ... Setting up libtext-markdown-discount-perl:amd64 (0.12-1+b1) ... Setting up libexception-class-perl (1.44-1) ... Setting up libdevel-callchecker-perl (0.008-1+b2) ... Setting up libdata-optlist-perl (0.110-1) ... Setting up gpgconf (2.2.20-1) ... Setting up gpg (2.2.20-1) ... Setting up libsub-exporter-perl (0.987-1) ... Setting up libiterator-perl (0.03+ds1-1) ... Setting up libiterator-util-perl (0.02+ds1-1) ... Setting up libparams-classify-perl (0.015-1+b3) ... Setting up libmodule-runtime-perl (0.016-1) ... Setting up libdata-dpath-perl (0.58-1) ... Setting up libmodule-implementation-perl (0.09-1) ... Setting up libpackage-stash-perl (0.39-1) ... Setting up libimport-into-perl (1.002005-1) ... Setting up libmoo-perl (2.004004-1) ... Setting up libmoox-aliases-perl (0.001006-1) ... Setting up libb-hooks-endofscope-perl (0.24-1) ... Setting up libnamespace-clean-perl (0.27-1) ... Setting up lintian (2.104.0) ... Setting up sbuild-build-depends-lintian-dummy:s390x (0.invalid.0) ... Processing triggers for man-db (2.9.3-2) ... Not building database; man-db/auto-update is not 'true'. Processing triggers for libc-bin (2.31-4) ... I: Lintian run was successful. +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 14016 Build-Time: 42 Distribution: unstable Foreign Architectures: s390x Host Architecture: s390x Install-Time: 38 Job: libpsortb_1.0+dfsg-3 Lintian: pass Machine Architecture: amd64 Package: libpsortb Package-Time: 92 Source-Version: 1.0+dfsg-3 Space: 14016 Status: successful Version: 1.0+dfsg-3 -------------------------------------------------------------------------------- Finished at 2020-11-28T20:51:23Z Build needed 00:01:32, 14016k disk space