sbuild (Debian sbuild) 0.85.0 (04 January 2023) on mjolnir.einval.org +==============================================================================+ | libpsortb 1.0+dfsg-6 (i386) Fri, 24 May 2024 05:07:30 +0000 | +==============================================================================+ Package: libpsortb Version: 1.0+dfsg-6 Source Version: 1.0+dfsg-6 Distribution: unstable Machine Architecture: arm64 Host Architecture: i386 Build Architecture: arm64 Build Profiles: cross nocheck Build Type: any Unpacking /home/helmut/.cache/sbuild/unstable-arm64-sbuild.tar.zst to /tmp/tmp.sbuild.raN61ZB1Et... I: NOTICE: Log filtering will replace 'sbuild-unshare-dummy-location' with '<>' I: NOTICE: Log filtering will replace 'build/libpsortb-Wv7rg7/resolver-XUxex3' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://mirror.einval.org/debian unstable InRelease [198 kB] Get:2 http://mirror.einval.org/debian unstable/main Sources [10.6 MB] Get:3 http://mirror.einval.org/debian unstable/main i386 Packages [9686 kB] Get:4 http://mirror.einval.org/debian unstable/main arm64 Packages [9756 kB] Fetched 30.2 MB in 8s (3925 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: dash libsystemd0 libudev1 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 566 kB of archives. After this operation, 0 B of additional disk space will be used. Get:1 http://mirror.einval.org/debian unstable/main arm64 dash arm64 0.5.12-8 [90.5 kB] Get:2 http://mirror.einval.org/debian unstable/main arm64 libsystemd0 arm64 256~rc3-2 [345 kB] Get:3 http://mirror.einval.org/debian unstable/main arm64 libudev1 arm64 256~rc3-2 [131 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 566 kB in 0s (17.0 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11951 files and directories currently installed.) Preparing to unpack .../dash_0.5.12-8_arm64.deb ... Unpacking dash (0.5.12-8) over (0.5.12-7) ... Setting up dash (0.5.12-8) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11951 files and directories currently installed.) Preparing to unpack .../libsystemd0_256~rc3-2_arm64.deb ... Unpacking libsystemd0:arm64 (256~rc3-2) over (256~rc2-3) ... Setting up libsystemd0:arm64 (256~rc3-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11951 files and directories currently installed.) Preparing to unpack .../libudev1_256~rc3-2_arm64.deb ... Unpacking libudev1:arm64 (256~rc3-2) over (256~rc2-3) ... Setting up libudev1:arm64 (256~rc3-2) ... Processing triggers for debianutils (5.17) ... Processing triggers for libc-bin (2.38-11) ... +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'libpsortb' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/libpsortb.git Please use: git clone https://salsa.debian.org/med-team/libpsortb.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 106 kB of source archives. Get:1 http://mirror.einval.org/debian unstable/main libpsortb 1.0+dfsg-6 (dsc) [2185 B] Get:2 http://mirror.einval.org/debian unstable/main libpsortb 1.0+dfsg-6 (tar) [95.6 kB] Get:3 http://mirror.einval.org/debian unstable/main libpsortb 1.0+dfsg-6 (diff) [8500 B] Fetched 106 kB in 0s (393 kB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/libpsortb-Wv7rg7/libpsortb-1.0+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/libpsortb-Wv7rg7' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), d-shlibs, libsvm-dev, libsquid-dev, libhmmer2-dev, pkgconf, libc-dev, libstdc++-dev, build-essential:arm64, fakeroot:arm64, crossbuild-essential-i386:arm64, libc-dev:i386, libstdc++-dev:i386 Filtered Build-Depends: debhelper-compat (= 13), d-shlibs, libsvm-dev, libsquid-dev, libhmmer2-dev, pkgconf, libc-dev, libstdc++-dev, build-essential:arm64, fakeroot:arm64, crossbuild-essential-i386:arm64, libc-dev:i386, libstdc++-dev:i386 dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [609 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [771 B] Get:5 copy:/<>/apt_archive ./ Packages [813 B] Fetched 2193 B in 0s (124 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Execute external solver... The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-i686-linux-gnu bsdextrautils cpp-13-i686-linux-gnu cpp-i686-linux-gnu cross-config crossbuild-essential-i386 d-shlibs debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz fakeroot file g++-13-i686-linux-gnu g++-i686-linux-gnu gcc-13-base:i386 gcc-13-cross-base gcc-13-i686-linux-gnu gcc-13-i686-linux-gnu-base gcc-14-base:i386 gcc-14-cross-base gcc-i686-linux-gnu gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan8:i386 libasan8-i386-cross libatomic1:i386 libatomic1-i386-cross libc6:i386 libc6-dev:i386 libc6-dev-i386-cross libc6-i386-cross libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev:i386 libcrypt1:i386 libdata-optlist-perl libdebhelper-perl libdebian-dpkgcross-perl libelf1t64 libfakeroot libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-13-dev:i386 libgcc-13-dev-i386-cross libgcc-s1:i386 libgcc-s1-i386-cross libgomp1:i386 libgomp1-i386-cross libhmmer2-dev:i386 libicu72 libio-string-perl libitm1:i386 libitm1-i386-cross liblocale-gettext-perl libmagic-mgc libmagic1t64 libparams-util-perl libpipeline1 libpkgconf3 libquadmath0:i386 libquadmath0-i386-cross libsquid-dev:i386 libsquid1t64:i386 libstdc++-13-dev:i386 libstdc++-13-dev-i386-cross libstdc++6:i386 libstdc++6-i386-cross libsub-exporter-perl libsub-install-perl libsub-override-perl libsub-prototype-perl libsvm-dev:i386 libsvm3:i386 libtool libubsan1:i386 libubsan1-i386-cross libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl m4 man-db pkgconf:i386 pkgconf-bin po-debconf sensible-utils ucf Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc gcc-13-locales cpp-13-doc cpp-doc dh-make binutils-multiarch gcc-13-doc manpages-dev flex bison gdb-i686-linux-gnu gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff glibc-doc:i386 libc-l10n:i386 locales:i386 libnss-nis:i386 libnss-nisplus:i386 manpages-dev:i386 biosquid:i386 libstdc++-13-doc:i386 libtool-doc gfortran | fortran95-compiler gcj-jdk libyaml-shell-perl m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libidn2-0:i386 libarchive-cpio-perl libltdl-dev libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-i686-linux-gnu bsdextrautils cpp-13-i686-linux-gnu cpp-i686-linux-gnu cross-config crossbuild-essential-i386 d-shlibs debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz fakeroot file g++-13-i686-linux-gnu g++-i686-linux-gnu gcc-13-base:i386 gcc-13-cross-base gcc-13-i686-linux-gnu gcc-13-i686-linux-gnu-base gcc-14-base:i386 gcc-14-cross-base gcc-i686-linux-gnu gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan8:i386 libasan8-i386-cross libatomic1:i386 libatomic1-i386-cross libc6:i386 libc6-dev:i386 libc6-dev-i386-cross libc6-i386-cross libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev:i386 libcrypt1:i386 libdata-optlist-perl libdebhelper-perl libdebian-dpkgcross-perl libelf1t64 libfakeroot libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-13-dev:i386 libgcc-13-dev-i386-cross libgcc-s1:i386 libgcc-s1-i386-cross libgomp1:i386 libgomp1-i386-cross libhmmer2-dev:i386 libicu72 libio-string-perl libitm1:i386 libitm1-i386-cross liblocale-gettext-perl libmagic-mgc libmagic1t64 libparams-util-perl libpipeline1 libpkgconf3 libquadmath0:i386 libquadmath0-i386-cross libsquid-dev:i386 libsquid1t64:i386 libstdc++-13-dev:i386 libstdc++-13-dev-i386-cross libstdc++6:i386 libstdc++6-i386-cross libsub-exporter-perl libsub-install-perl libsub-override-perl libsub-prototype-perl libsvm-dev:i386 libsvm3:i386 libtool libubsan1:i386 libubsan1-i386-cross libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl m4 man-db pkgconf:i386 pkgconf-bin po-debconf sbuild-build-depends-main-dummy:i386 sensible-utils ucf 0 upgraded, 102 newly installed, 0 to remove and 0 not upgraded. Need to get 87.1 MB of archives. After this operation, 354 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [944 B] Get:2 http://mirror.einval.org/debian unstable/main arm64 liblocale-gettext-perl arm64 1.07-7 [14.8 kB] Get:3 http://mirror.einval.org/debian unstable/main arm64 sensible-utils all 0.0.22 [22.4 kB] Get:4 http://mirror.einval.org/debian unstable/main arm64 libmagic-mgc arm64 1:5.45-3 [314 kB] Get:5 http://mirror.einval.org/debian unstable/main arm64 libmagic1t64 arm64 1:5.45-3 [100 kB] Get:6 http://mirror.einval.org/debian unstable/main arm64 file arm64 1:5.45-3 [43.0 kB] Get:7 http://mirror.einval.org/debian unstable/main arm64 gettext-base arm64 0.21-14+b1 [160 kB] Get:8 http://mirror.einval.org/debian unstable/main arm64 libuchardet0 arm64 0.0.8-1+b1 [69.0 kB] Get:9 http://mirror.einval.org/debian unstable/main arm64 groff-base arm64 1.23.0-4 [1130 kB] Get:10 http://mirror.einval.org/debian unstable/main arm64 bsdextrautils arm64 2.40.1-1 [93.2 kB] Get:11 http://mirror.einval.org/debian unstable/main arm64 libpipeline1 arm64 1.5.7-2 [36.5 kB] Get:12 http://mirror.einval.org/debian unstable/main arm64 man-db arm64 2.12.1-1 [1394 kB] Get:13 http://mirror.einval.org/debian unstable/main arm64 ucf all 3.0043+nmu1 [55.2 kB] Get:14 http://mirror.einval.org/debian unstable/main arm64 m4 arm64 1.4.19-4 [277 kB] Get:15 http://mirror.einval.org/debian unstable/main arm64 autoconf all 2.71-3 [332 kB] Get:16 http://mirror.einval.org/debian unstable/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get:17 http://mirror.einval.org/debian unstable/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get:18 http://mirror.einval.org/debian unstable/main arm64 autopoint all 0.21-14 [496 kB] Get:19 http://mirror.einval.org/debian unstable/main arm64 gcc-13-i686-linux-gnu-base arm64 13.2.0-12cross1 [42.6 kB] Get:20 http://mirror.einval.org/debian unstable/main arm64 cpp-13-i686-linux-gnu arm64 13.2.0-12cross1 [9276 kB] Get:21 http://mirror.einval.org/debian unstable/main arm64 cpp-i686-linux-gnu arm64 4:13.2.0-7 [4720 B] Get:22 http://mirror.einval.org/debian unstable/main arm64 cross-config all 2.6.20 [16.3 kB] Get:23 http://mirror.einval.org/debian unstable/main arm64 binutils-i686-linux-gnu arm64 2.42-4 [2377 kB] Get:24 http://mirror.einval.org/debian unstable/main arm64 gcc-13-cross-base all 13.2.0-12cross1 [38.1 kB] Get:25 http://mirror.einval.org/debian unstable/main arm64 gcc-14-cross-base all 14-20240127-1cross1 [37.9 kB] Get:26 http://mirror.einval.org/debian unstable/main arm64 libc6-i386-cross all 2.38-11cross1 [1354 kB] Get:27 http://mirror.einval.org/debian unstable/main arm64 libgcc-s1-i386-cross all 14-20240127-1cross1 [69.3 kB] Get:28 http://mirror.einval.org/debian unstable/main arm64 libgomp1-i386-cross all 14-20240127-1cross1 [135 kB] Get:29 http://mirror.einval.org/debian unstable/main arm64 libitm1-i386-cross all 14-20240127-1cross1 [26.7 kB] Get:30 http://mirror.einval.org/debian unstable/main arm64 libatomic1-i386-cross all 14-20240127-1cross1 [7280 B] Get:31 http://mirror.einval.org/debian unstable/main arm64 libasan8-i386-cross all 14-20240127-1cross1 [2602 kB] Get:32 http://mirror.einval.org/debian unstable/main arm64 libstdc++6-i386-cross all 14-20240127-1cross1 [719 kB] Get:33 http://mirror.einval.org/debian unstable/main arm64 libubsan1-i386-cross all 14-20240127-1cross1 [1050 kB] Get:34 http://mirror.einval.org/debian unstable/main arm64 libquadmath0-i386-cross all 14-20240127-1cross1 [233 kB] Get:35 http://mirror.einval.org/debian unstable/main arm64 libgcc-13-dev-i386-cross all 13.2.0-12cross1 [2497 kB] Get:36 http://mirror.einval.org/debian unstable/main arm64 gcc-13-i686-linux-gnu arm64 13.2.0-12cross1 [17.8 MB] Get:37 http://mirror.einval.org/debian unstable/main arm64 gcc-i686-linux-gnu arm64 4:13.2.0-7 [1444 B] Get:38 http://mirror.einval.org/debian unstable/main arm64 libc6-dev-i386-cross all 2.38-11cross1 [1728 kB] Get:39 http://mirror.einval.org/debian unstable/main arm64 libstdc++-13-dev-i386-cross all 13.2.0-12cross1 [2276 kB] Get:40 http://mirror.einval.org/debian unstable/main arm64 g++-13-i686-linux-gnu arm64 13.2.0-12cross1 [10.1 MB] Get:41 http://mirror.einval.org/debian unstable/main arm64 g++-i686-linux-gnu arm64 4:13.2.0-7 [1196 B] Get:42 http://mirror.einval.org/debian unstable/main arm64 libconfig-inifiles-perl all 3.000003-2 [45.9 kB] Get:43 http://mirror.einval.org/debian unstable/main arm64 libio-string-perl all 1.08-4 [12.1 kB] Get:44 http://mirror.einval.org/debian unstable/main arm64 libicu72 arm64 72.1-4+b1 [9224 kB] Get:45 http://mirror.einval.org/debian unstable/main arm64 libxml2 arm64 2.9.14+dfsg-1.3+b3 [624 kB] Get:46 http://mirror.einval.org/debian unstable/main arm64 libxml-namespacesupport-perl all 1.12-2 [15.1 kB] Get:47 http://mirror.einval.org/debian unstable/main arm64 libxml-sax-base-perl all 1.09-3 [20.6 kB] Get:48 http://mirror.einval.org/debian unstable/main arm64 libxml-sax-perl all 1.02+dfsg-3 [59.4 kB] Get:49 http://mirror.einval.org/debian unstable/main arm64 libxml-libxml-perl arm64 2.0207+dfsg+really+2.0134-1+b3 [299 kB] Get:50 http://mirror.einval.org/debian unstable/main arm64 libxml-simple-perl all 2.25-2 [69.8 kB] Get:51 http://mirror.einval.org/debian unstable/main arm64 libyaml-perl all 1.31-1 [64.8 kB] Get:52 http://mirror.einval.org/debian unstable/main arm64 libconfig-auto-perl all 0.44-2 [19.2 kB] Get:53 http://mirror.einval.org/debian unstable/main arm64 libfile-which-perl all 1.27-2 [15.1 kB] Get:54 http://mirror.einval.org/debian unstable/main arm64 libfile-homedir-perl all 1.006-2 [42.4 kB] Get:55 http://mirror.einval.org/debian unstable/main arm64 libdebian-dpkgcross-perl all 2.6.20 [15.3 kB] Get:56 http://mirror.einval.org/debian unstable/main arm64 dpkg-cross all 2.6.20 [25.8 kB] Get:57 http://mirror.einval.org/debian unstable/main arm64 crossbuild-essential-i386 all 12.10 [3480 B] Get:58 http://mirror.einval.org/debian unstable/main arm64 d-shlibs all 0.106 [10.9 kB] Get:59 http://mirror.einval.org/debian unstable/main arm64 libdebhelper-perl all 13.15.3 [88.0 kB] Get:60 http://mirror.einval.org/debian unstable/main arm64 libtool all 2.4.7-7 [517 kB] Get:61 http://mirror.einval.org/debian unstable/main arm64 dh-autoreconf all 20 [17.1 kB] Get:62 http://mirror.einval.org/debian unstable/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get:63 http://mirror.einval.org/debian unstable/main arm64 libparams-util-perl arm64 1.102-3 [23.4 kB] Get:64 http://mirror.einval.org/debian unstable/main arm64 libsub-install-perl all 0.929-1 [10.5 kB] Get:65 http://mirror.einval.org/debian unstable/main arm64 libdata-optlist-perl all 0.114-1 [10.6 kB] Get:66 http://mirror.einval.org/debian unstable/main arm64 libsub-exporter-perl all 0.990-1 [50.6 kB] Get:67 http://mirror.einval.org/debian unstable/main arm64 libsub-prototype-perl arm64 0.03-2+b2 [9776 B] Get:68 http://mirror.einval.org/debian unstable/main arm64 libsub-override-perl all 0.11-1 [10.4 kB] Get:69 http://mirror.einval.org/debian unstable/main arm64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get:70 http://mirror.einval.org/debian unstable/main arm64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get:71 http://mirror.einval.org/debian unstable/main arm64 libelf1t64 arm64 0.191-1+b1 [187 kB] Get:72 http://mirror.einval.org/debian unstable/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get:73 http://mirror.einval.org/debian unstable/main arm64 gettext arm64 0.21-14+b1 [1249 kB] Get:74 http://mirror.einval.org/debian unstable/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get:75 http://mirror.einval.org/debian unstable/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get:76 http://mirror.einval.org/debian unstable/main arm64 debhelper all 13.15.3 [901 kB] Get:77 http://mirror.einval.org/debian unstable/main arm64 libfakeroot arm64 1.34-1 [28.4 kB] Get:78 http://mirror.einval.org/debian unstable/main arm64 fakeroot arm64 1.34-1 [73.5 kB] Get:79 http://mirror.einval.org/debian unstable/main i386 gcc-13-base i386 13.2.0-25 [45.8 kB] Get:80 http://mirror.einval.org/debian unstable/main i386 gcc-14-base i386 14.1.0-1 [44.2 kB] Get:81 http://mirror.einval.org/debian unstable/main i386 libgcc-s1 i386 14.1.0-1 [87.9 kB] Get:82 http://mirror.einval.org/debian unstable/main i386 libc6 i386 2.38-11 [2641 kB] Get:83 http://mirror.einval.org/debian unstable/main i386 libasan8 i386 14.1.0-1 [2603 kB] Get:84 http://mirror.einval.org/debian unstable/main i386 libatomic1 i386 14.1.0-1 [7540 B] Get:85 http://mirror.einval.org/debian unstable/main i386 libcrypt1 i386 1:4.4.36-4 [95.7 kB] Get:86 http://mirror.einval.org/debian unstable/main i386 libcrypt-dev i386 1:4.4.36-4 [125 kB] Get:87 http://mirror.einval.org/debian unstable/main i386 libc6-dev i386 2.38-11 [1733 kB] Get:88 http://mirror.einval.org/debian unstable/main i386 libgomp1 i386 14.1.0-1 [137 kB] Get:89 http://mirror.einval.org/debian unstable/main i386 libitm1 i386 14.1.0-1 [27.3 kB] Get:90 http://mirror.einval.org/debian unstable/main i386 libstdc++6 i386 14.1.0-1 [764 kB] Get:91 http://mirror.einval.org/debian unstable/main i386 libubsan1 i386 14.1.0-1 [1053 kB] Get:92 http://mirror.einval.org/debian unstable/main i386 libquadmath0 i386 14.1.0-1 [231 kB] Get:93 http://mirror.einval.org/debian unstable/main i386 libgcc-13-dev i386 13.2.0-25 [2496 kB] Get:94 http://mirror.einval.org/debian unstable/main i386 libhmmer2-dev i386 2.3.2+dfsg-12 [107 kB] Get:95 http://mirror.einval.org/debian unstable/main arm64 libpkgconf3 arm64 1.8.1-1+b2 [35.3 kB] Get:96 http://mirror.einval.org/debian unstable/main i386 libsquid1t64 i386 1.9g+cvs20050121-15.1 [81.6 kB] Get:97 http://mirror.einval.org/debian unstable/main i386 libsquid-dev i386 1.9g+cvs20050121-15.1 [152 kB] Get:98 http://mirror.einval.org/debian unstable/main i386 libstdc++-13-dev i386 13.2.0-25 [2357 kB] Get:99 http://mirror.einval.org/debian unstable/main i386 libsvm3 i386 3.24+ds-6+b1 [42.7 kB] Get:100 http://mirror.einval.org/debian unstable/main i386 libsvm-dev i386 3.24+ds-6+b1 [63.2 kB] Get:101 http://mirror.einval.org/debian unstable/main arm64 pkgconf-bin arm64 1.8.1-1+b2 [29.3 kB] Get:102 http://mirror.einval.org/debian unstable/main i386 pkgconf i386 1.8.1-1+b2 [26.2 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 87.1 MB in 1s (77.3 MB/s) Selecting previously unselected package liblocale-gettext-perl. (Reading database ... 11951 files and directories currently installed.) Preparing to unpack .../000-liblocale-gettext-perl_1.07-7_arm64.deb ... Unpacking liblocale-gettext-perl (1.07-7) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../001-sensible-utils_0.0.22_all.deb ... Unpacking sensible-utils (0.0.22) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../002-libmagic-mgc_1%3a5.45-3_arm64.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../003-libmagic1t64_1%3a5.45-3_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.45-3) ... Selecting previously unselected package file. Preparing to unpack .../004-file_1%3a5.45-3_arm64.deb ... Unpacking file (1:5.45-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../005-gettext-base_0.21-14+b1_arm64.deb ... Unpacking gettext-base (0.21-14+b1) ... 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Setting up libelf1t64:arm64 (0.191-1+b1) ... Setting up fakeroot (1.34-1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Setting up libxml-sax-base-perl (1.09-3) ... Setting up libio-string-perl (1.08-4) ... Setting up autotools-dev (20220109.1) ... Setting up cross-config (2.6.20) ... Setting up libpkgconf3:arm64 (1.8.1-1+b2) ... Setting up gcc-13-base:i386 (13.2.0-25) ... Setting up gcc-13-cross-base (13.2.0-12cross1) ... Setting up autopoint (0.21-14) ... Setting up d-shlibs (0.106) ... Setting up pkgconf-bin (1.8.1-1+b2) ... Setting up libparams-util-perl (1.102-3) ... Setting up autoconf (2.71-3) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.22) ... Setting up libuchardet0:arm64 (0.0.8-1+b1) ... Setting up libc6-i386-cross (2.38-11cross1) ... Setting up libhmmer2-dev:i386 (2.3.2+dfsg-12) ... Setting up libfile-homedir-perl (1.006-2) ... Setting up gcc-13-i686-linux-gnu-base:arm64 (13.2.0-12cross1) ... Setting up cpp-13-i686-linux-gnu (13.2.0-12cross1) ... Setting up libquadmath0-i386-cross (14-20240127-1cross1) ... Setting up libxml2:arm64 (2.9.14+dfsg-1.3+b3) ... Setting up liblocale-gettext-perl (1.07-7) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up gettext (0.21-14+b1) ... Setting up libtool (2.4.7-7) ... Setting up libatomic1-i386-cross (14-20240127-1cross1) ... Setting up libgomp1-i386-cross (14-20240127-1cross1) ... Setting up libc6-dev-i386-cross (2.38-11cross1) ... Setting up pkgconf:i386 (1.8.1-1+b2) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up libgcc-s1-i386-cross (14-20240127-1cross1) ... Setting up dh-autoreconf (20) ... Setting up libitm1-i386-cross (14-20240127-1cross1) ... Setting up libdata-optlist-perl (0.114-1) ... Setting up ucf (3.0043+nmu1) ... Setting up groff-base (1.23.0-4) ... Setting up cpp-i686-linux-gnu (4:13.2.0-7) ... Setting up libsub-exporter-perl (0.990-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libsub-prototype-perl (0.03-2+b2) ... Setting up man-db (2.12.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libxml-sax-perl (1.02+dfsg-3) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libasan8-i386-cross (14-20240127-1cross1) ... Setting up libstdc++6-i386-cross (14-20240127-1cross1) ... Setting up libxml-libxml-perl (2.0207+dfsg+really+2.0134-1+b3) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libsub-override-perl (0.11-1) ... Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up libubsan1-i386-cross (14-20240127-1cross1) ... Setting up libxml-simple-perl (2.25-2) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up libgcc-13-dev-i386-cross (13.2.0-12cross1) ... Setting up gcc-13-i686-linux-gnu (13.2.0-12cross1) ... Setting up libstdc++-13-dev-i386-cross (13.2.0-12cross1) ... Setting up debhelper (13.15.3) ... Setting up libconfig-auto-perl (0.44-2) ... Setting up gcc-i686-linux-gnu (4:13.2.0-7) ... Setting up g++-13-i686-linux-gnu (13.2.0-12cross1) ... Setting up libdebian-dpkgcross-perl (2.6.20) ... Setting up g++-i686-linux-gnu (4:13.2.0-7) ... Setting up dpkg-cross (2.6.20) ... Setting up crossbuild-essential-i386 (12.10) ... Setting up libgcc-s1:i386 (14.1.0-1) ... Setting up libc6:i386 (2.38-11) ... Setting up libasan8:i386 (14.1.0-1) ... Setting up libsquid1t64:i386 (1.9g+cvs20050121-15.1) ... Setting up libstdc++6:i386 (14.1.0-1) ... Setting up libitm1:i386 (14.1.0-1) ... Setting up libsvm3:i386 (3.24+ds-6+b1) ... Setting up libcrypt1:i386 (1:4.4.36-4) ... Setting up libgomp1:i386 (14.1.0-1) ... Setting up libsquid-dev:i386 (1.9g+cvs20050121-15.1) ... Setting up libquadmath0:i386 (14.1.0-1) ... Setting up libsvm-dev:i386 (3.24+ds-6+b1) ... Setting up libatomic1:i386 (14.1.0-1) ... Setting up libubsan1:i386 (14.1.0-1) ... Setting up libgcc-13-dev:i386 (13.2.0-25) ... Setting up libcrypt-dev:i386 (1:4.4.36-4) ... Setting up libc6-dev:i386 (2.38-11) ... Setting up libstdc++-13-dev:i386 (13.2.0-25) ... Setting up sbuild-build-depends-main-dummy:i386 (0.invalid.0) ... Processing triggers for libc-bin (2.38-11) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (i386 included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 6.1.0-7-arm64 #1 SMP Debian 6.1.20-1 (2023-03-19) arm64 (aarch64) Toolchain package versions: binutils_2.42-4 dpkg-dev_1.22.6 g++-13_13.2.0-25 gcc-13_13.2.0-25 libc6-dev_2.38-11 libstdc++-13-dev_13.2.0-25 libstdc++-13-dev-i386-cross_13.2.0-12cross1 libstdc++6_14.1.0-1 libstdc++6-i386-cross_14-20240127-1cross1 linux-libc-dev_6.8.9-1 Package versions: apt_2.9.3 autoconf_2.71-3 automake_1:1.16.5-1.3 autopoint_0.21-14 autotools-dev_20220109.1 base-files_13.2 base-passwd_3.6.3 bash_5.2.21-2+b1 binutils_2.42-4 binutils-aarch64-linux-gnu_2.42-4 binutils-common_2.42-4 binutils-i686-linux-gnu_2.42-4 bsdextrautils_2.40.1-1 bsdutils_1:2.40.1-1 build-essential_12.10 bzip2_1.0.8-5.1 coreutils_9.4-3.1 cpp_4:13.2.0-7 cpp-13_13.2.0-25 cpp-13-aarch64-linux-gnu_13.2.0-25 cpp-13-i686-linux-gnu_13.2.0-12cross1 cpp-aarch64-linux-gnu_4:13.2.0-7 cpp-i686-linux-gnu_4:13.2.0-7 cross-config_2.6.20 crossbuild-essential-i386_12.10 d-shlibs_0.106 dash_0.5.12-8 debconf_1.5.86 debhelper_13.15.3 debian-archive-keyring_2023.4 debianutils_5.17 dh-autoreconf_20 dh-strip-nondeterminism_1.13.1-1 diffutils_1:3.10-1 dpkg_1.22.6 dpkg-cross_2.6.20 dpkg-dev_1.22.6 dwz_0.15-1+b1 fakeroot_1.34-1 file_1:5.45-3 findutils_4.9.0-5 g++_4:13.2.0-7 g++-13_13.2.0-25 g++-13-aarch64-linux-gnu_13.2.0-25 g++-13-i686-linux-gnu_13.2.0-12cross1 g++-aarch64-linux-gnu_4:13.2.0-7 g++-i686-linux-gnu_4:13.2.0-7 gcc_4:13.2.0-7 gcc-13_13.2.0-25 gcc-13-aarch64-linux-gnu_13.2.0-25 gcc-13-base_13.2.0-25 gcc-13-cross-base_13.2.0-12cross1 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libctf-nobfd0_2.42-4 libctf0_2.42-4 libdata-optlist-perl_0.114-1 libdb5.3t64_5.3.28+dfsg2-7 libdebconfclient0_0.271+b3 libdebhelper-perl_13.15.3 libdebian-dpkgcross-perl_2.6.20 libdpkg-perl_1.22.6 libelf1t64_0.191-1+b1 libfakeroot_1.34-1 libffi8_3.4.6-1 libfile-find-rule-perl_0.34-3 libfile-homedir-perl_1.006-2 libfile-stripnondeterminism-perl_1.13.1-1 libfile-which-perl_1.27-2 libgcc-13-dev_13.2.0-25 libgcc-13-dev-i386-cross_13.2.0-12cross1 libgcc-s1_14.1.0-1 libgcc-s1-i386-cross_14-20240127-1cross1 libgcrypt20_1.10.3-3 libgdbm-compat4t64_1.23-5.1+b1 libgdbm6t64_1.23-5.1+b1 libgmp10_2:6.3.0+dfsg-2+b1 libgnutls30t64_3.8.5-2 libgomp1_14.1.0-1 libgomp1-i386-cross_14-20240127-1cross1 libgpg-error0_1.49-2 libgprofng0_2.42-4 libhmmer2-dev_2.3.2+dfsg-12 libhogweed6t64_3.9.1-2.2 libhwasan0_14.1.0-1 libicu72_72.1-4+b1 libidn2-0_2.3.7-2 libio-string-perl_1.08-4 libisl23_0.26-3+b2 libitm1_14.1.0-1 libitm1-i386-cross_14-20240127-1cross1 libjansson4_2.14-2+b2 liblocale-gettext-perl_1.07-7 liblsan0_14.1.0-1 liblz4-1_1.9.4-2 liblzma5_5.6.1+really5.4.5-1 libmagic-mgc_1:5.45-3 libmagic1t64_1:5.45-3 libmd0_1.1.0-2 libmount1_2.40.1-1 libmpc3_1.3.1-1+b2 libmpfr6_4.2.1-1+b1 libnettle8t64_3.9.1-2.2 libnumber-compare-perl_0.03-3 libp11-kit0_0.25.3-5 libpam-modules_1.5.3-7 libpam-modules-bin_1.5.3-7 libpam-runtime_1.5.3-7 libpam0g_1.5.3-7 libparams-util-perl_1.102-3 libpcre2-8-0_10.42-4+b1 libperl5.38t64_5.38.2-4 libpipeline1_1.5.7-2 libpkgconf3_1.8.1-1+b2 libquadmath0_14.1.0-1 libquadmath0-i386-cross_14-20240127-1cross1 libseccomp2_2.5.5-1 libselinux1_3.5-2+b2 libsframe1_2.42-4 libsmartcols1_2.40.1-1 libsquid-dev_1.9g+cvs20050121-15.1 libsquid1t64_1.9g+cvs20050121-15.1 libssl3t64_3.2.1-3 libstdc++-13-dev_13.2.0-25 libstdc++-13-dev-i386-cross_13.2.0-12cross1 libstdc++6_14.1.0-1 libstdc++6-i386-cross_14-20240127-1cross1 libsub-exporter-perl_0.990-1 libsub-install-perl_0.929-1 libsub-override-perl_0.11-1 libsub-prototype-perl_0.03-2+b2 libsvm-dev_3.24+ds-6+b1 libsvm3_3.24+ds-6+b1 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xz-utils_5.6.1+really5.4.5-1 zlib1g_1:1.3.dfsg+really1.3.1-1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: libpsortb Binary: libmodhmm0, libmodhmm-dev, libsvmloc0, libsvmloc-dev Architecture: any Version: 1.0+dfsg-6 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://www.psort.org/ Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/med-team/libpsortb Vcs-Git: https://salsa.debian.org/med-team/libpsortb.git Build-Depends: debhelper-compat (= 13), d-shlibs, libsvm-dev, libsquid-dev, libhmmer2-dev, pkgconf Package-List: libmodhmm-dev deb libdevel optional arch=any libmodhmm0 deb libs optional arch=any libsvmloc-dev deb libdevel optional arch=any libsvmloc0 deb libs optional arch=any Checksums-Sha1: 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use_debian_packaged_libs.patch dpkg-source: info: applying use_debian_packaged_libsvm.patch dpkg-source: info: applying remove_unused_debug_functions.patch dpkg-source: info: applying fix-implicit-declaration.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.i386 DEB_BUILD_OPTIONS=nocheck HOME=/var/lib/sbuild LANG=en_GB.UTF-8 LC_ALL=C.UTF-8 LOGNAME=helmut OLDPWD=/ PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games PWD=/<> SHELL=/bin/sh USER=helmut dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -ai386 -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package libpsortb dpkg-buildpackage: info: source version 1.0+dfsg-6 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-architecture: warning: specified GNU system type i686-linux-gnu does not match CC system type aarch64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 debian/rules clean dh clean dh_clean debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a libtoolize: putting auxiliary files in '.'. libtoolize: copying file './ltmain.sh' libtoolize: Consider adding 'AC_CONFIG_MACRO_DIRS([m4])' to configure.ac, libtoolize: and rerunning libtoolize and aclocal. libtoolize: Consider adding '-I m4' to ACLOCAL_AMFLAGS in Makefile.am. configure.ac:7: warning: The macro `AC_CONFIG_HEADER' is obsolete. configure.ac:7: You should run autoupdate. ./lib/autoconf/status.m4:719: AC_CONFIG_HEADER is expanded from... configure.ac:7: the top level configure.ac:17: warning: The macro `AC_PROG_LIBTOOL' is obsolete. configure.ac:17: You should run autoupdate. aclocal.m4:122: AC_PROG_LIBTOOL is expanded from... configure.ac:17: the top level configure.ac:47: warning: The macro `AC_HEADER_STDC' is obsolete. configure.ac:47: You should run autoupdate. ./lib/autoconf/headers.m4:704: AC_HEADER_STDC is expanded from... configure.ac:47: the top level configure.ac:55: warning: The macro `AC_HEADER_TIME' is obsolete. configure.ac:55: You should run autoupdate. ./lib/autoconf/headers.m4:743: AC_HEADER_TIME is expanded from... configure.ac:55: the top level configure.ac:12: installing './compile' configure.ac:17: installing './config.guess' configure.ac:17: installing './config.sub' configure.ac:8: installing './install-sh' configure.ac:8: installing './missing' modhmm0.92b/Makefile.am: installing './depcomp' dh_auto_configure -a ./configure --build=aarch64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/i386-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --host=i686-linux-gnu configure: loading site script /etc/dpkg-cross/cross-config.i386 checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for i686-linux-gnu-strip... i686-linux-gnu-strip checking for a race-free mkdir -p... /usr/bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for i686-linux-gnu-g++... i686-linux-gnu-g++ checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... yes checking for suffix of object files... o checking whether the compiler supports GNU C++... yes checking whether i686-linux-gnu-g++ accepts -g... yes checking for i686-linux-gnu-g++ option to enable C++11 features... none needed checking whether make supports the include directive... yes (GNU style) checking dependency style of i686-linux-gnu-g++... none checking for i686-linux-gnu-gcc... i686-linux-gnu-gcc checking whether the compiler supports GNU C... yes checking whether i686-linux-gnu-gcc accepts -g... yes checking for i686-linux-gnu-gcc option to enable C11 features... none needed checking whether i686-linux-gnu-gcc understands -c and -o together... yes checking dependency style of i686-linux-gnu-gcc... none checking how to run the C preprocessor... i686-linux-gnu-gcc -E checking whether ln -s works... yes checking whether make sets $(MAKE)... (cached) yes checking build system type... aarch64-unknown-linux-gnu checking host system type... i686-pc-linux-gnu checking how to print strings... printf checking for a sed that does not truncate output... /usr/bin/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking for ld used by i686-linux-gnu-gcc... /usr/i686-linux-gnu/bin/ld checking if the linker (/usr/i686-linux-gnu/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/i686-linux-gnu-nm -B checking the name lister (/usr/bin/i686-linux-gnu-nm -B) interface... BSD nm checking the maximum length of command line arguments... 1572864 checking how to convert aarch64-unknown-linux-gnu file names to i686-pc-linux-gnu format... func_convert_file_noop checking how to convert aarch64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/i686-linux-gnu/bin/ld option to reload object files... -r checking for i686-linux-gnu-file... no checking for file... file configure: WARNING: using cross tools not prefixed with host triplet checking for i686-linux-gnu-objdump... i686-linux-gnu-objdump checking how to recognize dependent libraries... pass_all checking for i686-linux-gnu-dlltool... no checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for i686-linux-gnu-ar... i686-linux-gnu-ar checking for archiver @FILE support... @ checking for i686-linux-gnu-strip... (cached) i686-linux-gnu-strip checking for i686-linux-gnu-ranlib... i686-linux-gnu-ranlib checking command to parse /usr/bin/i686-linux-gnu-nm -B output from i686-linux-gnu-gcc object... ok checking for sysroot... no checking for a working dd... /usr/bin/dd checking how to truncate binary pipes... /usr/bin/dd bs=4096 count=1 checking for i686-linux-gnu-mt... no checking for mt... no checking if : is a manifest tool... no checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for sys/time.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if i686-linux-gnu-gcc supports -fno-rtti -fno-exceptions... no checking for i686-linux-gnu-gcc option to produce PIC... -fPIC -DPIC checking if i686-linux-gnu-gcc PIC flag -fPIC -DPIC works... yes checking if i686-linux-gnu-gcc static flag -static works... yes checking if i686-linux-gnu-gcc supports -c -o file.o... yes checking if i686-linux-gnu-gcc supports -c -o file.o... (cached) yes checking whether the i686-linux-gnu-gcc linker (/usr/i686-linux-gnu/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking how to run the C++ preprocessor... i686-linux-gnu-g++ -E checking for ld used by i686-linux-gnu-g++... /usr/i686-linux-gnu/bin/ld checking if the linker (/usr/i686-linux-gnu/bin/ld) is GNU ld... yes checking whether the i686-linux-gnu-g++ linker (/usr/i686-linux-gnu/bin/ld) supports shared libraries... yes checking for i686-linux-gnu-g++ option to produce PIC... -fPIC -DPIC checking if i686-linux-gnu-g++ PIC flag -fPIC -DPIC works... yes checking if i686-linux-gnu-g++ static flag -static works... yes checking if i686-linux-gnu-g++ supports -c -o file.o... yes checking if i686-linux-gnu-g++ supports -c -o file.o... (cached) yes checking whether the i686-linux-gnu-g++ linker (/usr/i686-linux-gnu/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for main in -lm... yes checking for egrep... (cached) /usr/bin/grep -E checking for float.h... yes checking for limits.h... yes checking for memory.h... yes checking for netinet/in.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for unistd.h... (cached) yes checking for _Bool... yes checking for stdbool.h that conforms to C99... yes checking for an ANSI C-conforming const... yes checking for inline... inline checking for size_t... yes checking whether struct tm is in sys/time.h or time.h... time.h checking for _LARGEFILE_SOURCE value needed for large files... no checking for GNU libc compatible malloc... (cached) yes checking for GNU libc compatible realloc... (cached) yes checking whether lstat correctly handles trailing slash... yes checking whether stat accepts an empty string... yes checking for strftime... yes checking for vprintf... yes checking for working strtod... no checking for pow... yes checking for atexit... yes checking for floor... yes checking for memmove... yes checking for memset... yes checking for pow... (cached) yes checking for sqrt... yes checking for strchr... yes checking for strcspn... yes checking for strerror... yes checking for strpbrk... yes checking for strrchr... yes checking for strspn... yes checking for strstr... yes checking for strtol... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating svmloc/Makefile config.status: creating modhmm0.92b/Makefile config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands dh_auto_build -a make -j1 make[1]: Entering directory '/<>' make all-recursive make[2]: Entering directory '/<>' Making all in svmloc make[3]: Entering directory '/<>/svmloc' /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o binding.lo binding.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c binding.cpp -fPIC -DPIC -o .libs/binding.o libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c binding.cpp -o binding.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o svmloc.lo svmloc.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c svmloc.cpp -fPIC -DPIC -o .libs/svmloc.o libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c svmloc.cpp -o svmloc.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=link i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -version-info 0:0:0 -lsvm -Wl,-z,relro -Wl,-z,now -o libsvmloc.la -rpath /usr/lib/i386-linux-gnu binding.lo svmloc.lo -lm libtool: link: i686-linux-gnu-g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc-cross/i686-linux-gnu/13/../../../../i686-linux-gnu/lib/../lib/crti.o /usr/lib/gcc-cross/i686-linux-gnu/13/crtbeginS.o .libs/binding.o .libs/svmloc.o -lsvm -L/usr/lib/gcc-cross/i686-linux-gnu/13 -L/usr/lib/gcc-cross/i686-linux-gnu/13/../../../../i686-linux-gnu/lib/../lib -L/lib/i386-linux-gnu -L/lib/../lib -L/usr/lib/i386-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc-cross/i686-linux-gnu/13/../../../../i686-linux-gnu/lib -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc-cross/i686-linux-gnu/13/crtendS.o /usr/lib/gcc-cross/i686-linux-gnu/13/../../../../i686-linux-gnu/lib/../lib/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,libsvmloc.so.0 -o .libs/libsvmloc.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libsvmloc.so.0" && ln -s "libsvmloc.so.0.0.0" "libsvmloc.so.0") libtool: link: (cd ".libs" && rm -f "libsvmloc.so" && ln -s "libsvmloc.so.0.0.0" "libsvmloc.so") libtool: link: i686-linux-gnu-ar cr .libs/libsvmloc.a binding.o svmloc.o libtool: link: i686-linux-gnu-ranlib .libs/libsvmloc.a libtool: link: ( cd ".libs" && rm -f "libsvmloc.la" && ln -s "../libsvmloc.la" "libsvmloc.la" ) make[3]: Leaving directory '/<>/svmloc' Making all in modhmm0.92b make[3]: Entering directory '/<>/modhmm0.92b' /bin/bash ../libtool --tag=CC --mode=compile i686-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o core_algorithms_multialpha.lo core_algorithms_multialpha.c libtool: compile: i686-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c core_algorithms_multialpha.c -fPIC -DPIC -o .libs/core_algorithms_multialpha.o core_algorithms_multialpha.c: In function ‘msa_forward_multi’: core_algorithms_multialpha.c:1190:87: warning: passing argument 1 of ‘get_alphabet_index’ from incompatible pointer type [-Wincompatible-pointer-types] 1190 | a_index = get_alphabet_index((msa_seq_infop->msa_seq_1 + (c * (hmmp->a_size+1)))->query_letter, hmmp->alphabet, hmmp->a_size); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ | | | char * In file included from core_algorithms_multialpha.c:7: funcs.h:136:24: note: expected ‘struct letter_s *’ but argument is of type ‘char *’ 136 | int get_alphabet_index(struct letter_s*, char*, int); | ^~~~~~~~~~~~~~~~ core_algorithms_multialpha.c:1197:93: warning: passing argument 1 of ‘get_alphabet_index’ from incompatible pointer type [-Wincompatible-pointer-types] 1197 | a_index_2 = get_alphabet_index((msa_seq_infop->msa_seq_2 + (c * (hmmp->a_size_2+1)))->query_letter, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ | | | char * funcs.h:136:24: note: expected ‘struct letter_s *’ but argument is of type ‘char *’ 136 | int get_alphabet_index(struct letter_s*, char*, int); | ^~~~~~~~~~~~~~~~ core_algorithms_multialpha.c:1206:93: warning: passing argument 1 of ‘get_alphabet_index’ from incompatible pointer type [-Wincompatible-pointer-types] 1206 | a_index_3 = get_alphabet_index((msa_seq_infop->msa_seq_3 + (c * (hmmp->a_size_3+1)))->query_letter, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ | | | char * funcs.h:136:24: note: expected ‘struct letter_s *’ but argument is of type ‘char *’ 136 | int get_alphabet_index(struct letter_s*, char*, int); | ^~~~~~~~~~~~~~~~ core_algorithms_multialpha.c:1215:93: warning: passing argument 1 of ‘get_alphabet_index’ from incompatible pointer type [-Wincompatible-pointer-types] 1215 | a_index_4 = get_alphabet_index((msa_seq_infop->msa_seq_4 + (c * (hmmp->a_size_4+1)))->query_letter, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ | | | char * funcs.h:136:24: note: expected ‘struct letter_s *’ but argument is of type ‘char *’ 136 | int get_alphabet_index(struct letter_s*, char*, int); | ^~~~~~~~~~~~~~~~ core_algorithms_multialpha.c: In function ‘msa_backward_multi’: core_algorithms_multialpha.c:1417:87: warning: passing argument 1 of ‘get_alphabet_index’ from incompatible pointer type [-Wincompatible-pointer-types] 1417 | a_index = get_alphabet_index((msa_seq_infop->msa_seq_1 + (c * (hmmp->a_size+1)))->query_letter, hmmp->alphabet, hmmp->a_size); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ | | | char * funcs.h:136:24: note: expected ‘struct letter_s *’ but argument is of type ‘char *’ 136 | int get_alphabet_index(struct letter_s*, char*, int); | ^~~~~~~~~~~~~~~~ core_algorithms_multialpha.c:1424:93: warning: passing argument 1 of ‘get_alphabet_index’ from incompatible pointer type [-Wincompatible-pointer-types] 1424 | a_index_2 = get_alphabet_index((msa_seq_infop->msa_seq_2 + (c * (hmmp->a_size_2+1)))->query_letter, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ | | | char * funcs.h:136:24: note: expected ‘struct letter_s *’ but argument is of type ‘char *’ 136 | int get_alphabet_index(struct letter_s*, char*, int); | ^~~~~~~~~~~~~~~~ core_algorithms_multialpha.c:1433:93: warning: passing argument 1 of ‘get_alphabet_index’ from incompatible pointer type [-Wincompatible-pointer-types] 1433 | a_index_3 = get_alphabet_index((msa_seq_infop->msa_seq_3 + (c * (hmmp->a_size_3+1)))->query_letter, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ | | | char * funcs.h:136:24: note: expected ‘struct letter_s *’ but argument is of type ‘char *’ 136 | int get_alphabet_index(struct letter_s*, char*, int); | ^~~~~~~~~~~~~~~~ core_algorithms_multialpha.c:1442:93: warning: passing argument 1 of ‘get_alphabet_index’ from incompatible pointer type [-Wincompatible-pointer-types] 1442 | a_index_4 = get_alphabet_index((msa_seq_infop->msa_seq_4 + (c * (hmmp->a_size_4+1)))->query_letter, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ | | | char * funcs.h:136:24: note: expected ‘struct letter_s *’ but argument is of type ‘char *’ 136 | int get_alphabet_index(struct letter_s*, char*, int); | ^~~~~~~~~~~~~~~~ core_algorithms_multialpha.c: In function ‘msa_viterbi_multi’: core_algorithms_multialpha.c:1606:87: warning: passing argument 1 of ‘get_alphabet_index’ from incompatible pointer type [-Wincompatible-pointer-types] 1606 | a_index = get_alphabet_index((msa_seq_infop->msa_seq_1 + (c * (hmmp->a_size+1)))->query_letter, hmmp->alphabet, hmmp->a_size); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ | | | char * funcs.h:136:24: note: expected ‘struct letter_s *’ but argument is of type ‘char *’ 136 | int get_alphabet_index(struct letter_s*, char*, int); | ^~~~~~~~~~~~~~~~ core_algorithms_multialpha.c:1613:93: warning: passing argument 1 of ‘get_alphabet_index’ from incompatible pointer type [-Wincompatible-pointer-types] 1613 | a_index_2 = get_alphabet_index((msa_seq_infop->msa_seq_2 + (c * (hmmp->a_size_2+1)))->query_letter, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ | | | char * funcs.h:136:24: note: expected ‘struct letter_s *’ but argument is of type ‘char *’ 136 | int get_alphabet_index(struct letter_s*, char*, int); | ^~~~~~~~~~~~~~~~ core_algorithms_multialpha.c:1622:93: warning: passing argument 1 of ‘get_alphabet_index’ from incompatible pointer type [-Wincompatible-pointer-types] 1622 | a_index_3 = get_alphabet_index((msa_seq_infop->msa_seq_3 + (c * (hmmp->a_size_3+1)))->query_letter, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ | | | char * funcs.h:136:24: note: expected ‘struct letter_s *’ but argument is of type ‘char *’ 136 | int get_alphabet_index(struct letter_s*, char*, int); | ^~~~~~~~~~~~~~~~ core_algorithms_multialpha.c:1631:93: warning: passing argument 1 of ‘get_alphabet_index’ from incompatible pointer type [-Wincompatible-pointer-types] 1631 | a_index_4 = get_alphabet_index((msa_seq_infop->msa_seq_4 + (c * (hmmp->a_size_4+1)))->query_letter, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ | | | char * funcs.h:136:24: note: expected ‘struct letter_s *’ but argument is of type ‘char *’ 136 | int get_alphabet_index(struct letter_s*, char*, int); | ^~~~~~~~~~~~~~~~ core_algorithms_multialpha.c: In function ‘msa_one_best_multi’: core_algorithms_multialpha.c:1890:87: warning: passing argument 1 of ‘get_alphabet_index’ from incompatible pointer type [-Wincompatible-pointer-types] 1890 | a_index = get_alphabet_index((msa_seq_infop->msa_seq_1 + (c * (hmmp->a_size+1)))->query_letter, hmmp->alphabet, hmmp->a_size); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ | | | char * funcs.h:136:24: note: expected ‘struct letter_s *’ but argument is of type ‘char *’ 136 | int get_alphabet_index(struct letter_s*, char*, int); | ^~~~~~~~~~~~~~~~ core_algorithms_multialpha.c:1897:93: warning: passing argument 1 of ‘get_alphabet_index’ from incompatible pointer type [-Wincompatible-pointer-types] 1897 | a_index_2 = get_alphabet_index((msa_seq_infop->msa_seq_2 + (c * (hmmp->a_size_2+1)))->query_letter, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ | | | char * funcs.h:136:24: note: expected ‘struct letter_s *’ but argument is of type ‘char *’ 136 | int get_alphabet_index(struct letter_s*, char*, int); | ^~~~~~~~~~~~~~~~ core_algorithms_multialpha.c:1906:93: warning: passing argument 1 of ‘get_alphabet_index’ from incompatible pointer type [-Wincompatible-pointer-types] 1906 | a_index_3 = get_alphabet_index((msa_seq_infop->msa_seq_3 + (c * (hmmp->a_size_3+1)))->query_letter, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ | | | char * funcs.h:136:24: note: expected ‘struct letter_s *’ but argument is of type ‘char *’ 136 | int get_alphabet_index(struct letter_s*, char*, int); | ^~~~~~~~~~~~~~~~ core_algorithms_multialpha.c:1915:93: warning: passing argument 1 of ‘get_alphabet_index’ from incompatible pointer type [-Wincompatible-pointer-types] 1915 | a_index_4 = get_alphabet_index((msa_seq_infop->msa_seq_4 + (c * (hmmp->a_size_4+1)))->query_letter, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ | | | char * funcs.h:136:24: note: expected ‘struct letter_s *’ but argument is of type ‘char *’ 136 | int get_alphabet_index(struct letter_s*, char*, int); | ^~~~~~~~~~~~~~~~ libtool: compile: i686-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c core_algorithms_multialpha.c -o core_algorithms_multialpha.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=compile i686-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o debug_funcs.lo debug_funcs.c libtool: compile: i686-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c debug_funcs.c -fPIC -DPIC -o .libs/debug_funcs.o debug_funcs.c:7:76: warning: ‘struct hmm_multi_s’ declared inside parameter list will not be visible outside of this definition or declaration 7 | int read_multi_prior_file_multi(struct emission_dirichlet_s *em_di, struct hmm_multi_s *hmmp, FILE *priorfile, int alphabet); | ^~~~~~~~~~~ debug_funcs.c:7:40: warning: ‘struct emission_dirichlet_s’ declared inside parameter list will not be visible outside of this definition or declaration 7 | int read_multi_prior_file_multi(struct emission_dirichlet_s *em_di, struct hmm_multi_s *hmmp, FILE *priorfile, int alphabet); | ^~~~~~~~~~~~~~~~~~~~ libtool: compile: i686-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c debug_funcs.c -o debug_funcs.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=compile i686-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o hmmsearch.lo hmmsearch.c libtool: compile: i686-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c hmmsearch.c -fPIC -DPIC -o .libs/hmmsearch.o hmmsearch.c: In function ‘get_scores’: hmmsearch.c:535:19: warning: assignment to ‘struct helix_site *’ from incompatible pointer type ‘helix_sites *’ [-Wincompatible-pointer-types] 535 | hSites->helix = (helix_sites *) malloc(sizeof (helix_sites) * helices); | ^ hmmsearch.c: In function ‘get_nullmodel_score_multi’: hmmsearch.c:656:42: warning: format ‘%s’ expects argument of type ‘char *’, but argument 2 has type ‘struct letter_s *’ [-Wformat=] 656 | printf("Could not find letter %s when scoring null model\n", &seq[l]); | ~^ ~~~~~~~ | | | | char * struct letter_s * hmmsearch.c:674:44: warning: format ‘%s’ expects argument of type ‘char *’, but argument 2 has type ‘struct letter_s *’ [-Wformat=] 674 | printf("Could not find letter %s when scoring null model\n", &seq_2[l]); | ~^ ~~~~~~~~~ | | | | char * struct letter_s * hmmsearch.c:693:44: warning: format ‘%s’ expects argument of type ‘char *’, but argument 2 has type ‘struct letter_s *’ [-Wformat=] 693 | printf("Could not find letter %s when scoring null model\n", &seq_3[l]); | ~^ ~~~~~~~~~ | | | | char * struct letter_s * hmmsearch.c:712:44: warning: format ‘%s’ expects argument of type ‘char *’, but argument 2 has type ‘struct letter_s *’ [-Wformat=] 712 | printf("Could not find letter %s when scoring null model\n", &seq[l]); | ~^ ~~~~~~~ | | | | char * struct letter_s * libtool: compile: i686-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c hmmsearch.c -o hmmsearch.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=compile i686-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o readhmm.lo readhmm.c libtool: compile: i686-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c readhmm.c -fPIC -DPIC -o .libs/readhmm.o readhmm.c: In function ‘readhmm’: readhmm.c:121:28: warning: assignment to ‘struct transition_s *’ from incompatible pointer type ‘int *’ [-Wincompatible-pointer-types] 121 | hmmp->trans_tie_groups = (int*)(malloc_or_die((hmmp->nr_t + hmmp->nr_ttg) * sizeof(struct transition_s))); | ^ readhmm.c: In function ‘readanhmm’: readhmm.c:394:28: warning: assignment to ‘struct transition_s *’ from incompatible pointer type ‘int *’ [-Wincompatible-pointer-types] 394 | hmmp->trans_tie_groups = (int*)(malloc_or_die((hmmp->nr_t + hmmp->nr_ttg) * sizeof(struct transition_s))); | ^ readhmm.c: In function ‘readhmm’: readhmm.c:69:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 69 | fgets(s, MAX_LINE, file); | ^~~~~~~~~~~~~~~~~~~~~~~~ readhmm.c: In function ‘readanhmm’: readhmm.c:342:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 342 | fgets(s, MAX_LINE, file); | ^~~~~~~~~~~~~~~~~~~~~~~~ readhmm.c: In function ‘read_module’: readhmm.c:745:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 745 | fgets(s, MAX_LINE, file); | ^~~~~~~~~~~~~~~~~~~~~~~~ readhmm.c:780:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 780 | fgets(s, MAX_LINE, file); | ^~~~~~~~~~~~~~~~~~~~~~~~ readhmm.c:815:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 815 | fgets(s, MAX_LINE, file); | ^~~~~~~~~~~~~~~~~~~~~~~~ readhmm.c:844:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 844 | fgets(s, MAX_LINE, file); | ^~~~~~~~~~~~~~~~~~~~~~~~ readhmm.c:848:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 848 | fgets(s, MAX_LINE, file); | ^~~~~~~~~~~~~~~~~~~~~~~~ readhmm.c: In function ‘read_prior_files’: readhmm.c:1225:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1225 | fgets(ps, 2048, priorfile); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ libtool: compile: i686-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c readhmm.c -o readhmm.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=compile i686-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o readhmm_multialpha.lo readhmm_multialpha.c libtool: compile: i686-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c readhmm_multialpha.c -fPIC -DPIC -o .libs/readhmm_multialpha.o readhmm_multialpha.c: In function ‘copy_hmm_struct’: readhmm_multialpha.c:273:34: warning: assignment to ‘struct transition_s *’ from incompatible pointer type ‘int *’ [-Wincompatible-pointer-types] 273 | retrain_hmmp->trans_tie_groups = (int*)(malloc_or_die((hmmp->nr_t + hmmp->nr_ttg) * sizeof(struct transition_s))); | ^ readhmm_multialpha.c: In function ‘readhmm_multialpha’: readhmm_multialpha.c:469:28: warning: assignment to ‘struct transition_s *’ from incompatible pointer type ‘int *’ [-Wincompatible-pointer-types] 469 | hmmp->trans_tie_groups = (int*)(malloc_or_die((hmmp->nr_t + hmmp->nr_ttg) * sizeof(struct transition_s))); | ^ readhmm_multialpha.c:326:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 326 | fgets(s, MAX_LINE, file); | ^~~~~~~~~~~~~~~~~~~~~~~~ readhmm_multialpha.c: In function ‘read_module_multi’: readhmm_multialpha.c:1039:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1039 | fgets(s, MAX_LINE, file); | ^~~~~~~~~~~~~~~~~~~~~~~~ readhmm_multialpha.c:1074:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1074 | fgets(s, MAX_LINE, file); | ^~~~~~~~~~~~~~~~~~~~~~~~ readhmm_multialpha.c:1108:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1108 | fgets(s, MAX_LINE, file); | ^~~~~~~~~~~~~~~~~~~~~~~~ readhmm_multialpha.c:1137:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1137 | fgets(s, MAX_LINE, file); | ^~~~~~~~~~~~~~~~~~~~~~~~ readhmm_multialpha.c:1140:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1140 | fgets(s, MAX_LINE, file); | ^~~~~~~~~~~~~~~~~~~~~~~~ readhmm_multialpha.c:1166:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1166 | fgets(s, MAX_LINE, file); | ^~~~~~~~~~~~~~~~~~~~~~~~ readhmm_multialpha.c:1169:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1169 | fgets(s, MAX_LINE, file); | ^~~~~~~~~~~~~~~~~~~~~~~~ readhmm_multialpha.c:1195:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1195 | fgets(s, MAX_LINE, file); | ^~~~~~~~~~~~~~~~~~~~~~~~ readhmm_multialpha.c:1199:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1199 | fgets(s, MAX_LINE, file); | ^~~~~~~~~~~~~~~~~~~~~~~~ readhmm_multialpha.c:1226:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1226 | fgets(s, MAX_LINE, file); | ^~~~~~~~~~~~~~~~~~~~~~~~ readhmm_multialpha.c:1233:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1233 | fgets(s, MAX_LINE, file); | ^~~~~~~~~~~~~~~~~~~~~~~~ libtool: compile: i686-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c readhmm_multialpha.c -o readhmm_multialpha.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=compile i686-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o readseqs_multialpha.lo readseqs_multialpha.c libtool: compile: i686-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c readseqs_multialpha.c -fPIC -DPIC -o .libs/readseqs_multialpha.o readseqs_multialpha.c: In function ‘get_sequence_fasta_multi’: readseqs_multialpha.c:83:39: warning: assignment to ‘char’ from ‘char *’ makes integer from pointer without a cast [-Wint-conversion] 83 | (seq_infop->seqs + seq_nr)->name[0] = "s"; | ^ readseqs_multialpha.c: In function ‘get_sequence_std_multi’: readseqs_multialpha.c:121:55: warning: unknown escape sequence: '\s' 121 | if(line[0] == '<' || line[0] == '#' || line[0] == '\s' || line[0] == '\n' || line[0] == '/') { | ^~~~ readseqs_multialpha.c: In function ‘get_sequences_msa_std_multi’: readseqs_multialpha.c:372:18: warning: unknown escape sequence: '\s' 372 | else if(i == '\s' && i == '\n') { | ^~~~ readseqs_multialpha.c: In function ‘get_sequence_std_multi’: readseqs_multialpha.c:286:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 286 | fgets(line, MAX_LINE, seqfile); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ readseqs_multialpha.c: In function ‘get_sequences_msa_std_multi’: readseqs_multialpha.c:625:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 625 | fgets(line, MAX_LINE, seqfile); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ readseqs_multialpha.c:754:9: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 754 | fgets(line, MAX_LINE, seqfile); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ readseqs_multialpha.c:874:9: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 874 | fgets(line, MAX_LINE, seqfile); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ readseqs_multialpha.c:995:9: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 995 | fgets(line, MAX_LINE, seqfile); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libtool: compile: i686-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c readseqs_multialpha.c -o readseqs_multialpha.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=compile i686-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o std_calculation_funcs.lo std_calculation_funcs.c libtool: compile: i686-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c std_calculation_funcs.c -fPIC -DPIC -o .libs/std_calculation_funcs.o libtool: compile: i686-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c std_calculation_funcs.c -o std_calculation_funcs.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=compile i686-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o std_funcs.lo std_funcs.c libtool: compile: i686-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c std_funcs.c -fPIC -DPIC -o .libs/std_funcs.o std_funcs.c: In function ‘get_replacement_letter_index_single’: std_funcs.c:680:62: warning: comparison between pointer and integer 680 | if(((replacement_letters->letters + a_index)->letter)[0] == c) { | ^~ std_funcs.c: In function ‘get_reverse_msa_seq’: std_funcs.c:2071:74: warning: assignment to ‘int *’ from ‘int’ makes pointer from integer without a cast [-Wint-conversion] 2071 | *(reverse_msa_seq_infop->gaps + (msa_seq_infop->msa_seq_length + i)) = END; | ^ std_funcs.c: In function ‘get_reverse_msa_seq_multi’: std_funcs.c:2179:74: warning: assignment to ‘int *’ from ‘int’ makes pointer from integer without a cast [-Wint-conversion] 2179 | *(reverse_msa_seq_infop->gaps + (msa_seq_infop->msa_seq_length + i)) = END; | ^ std_funcs.c: In function ‘update_shares_prior_multi’: std_funcs.c:2466:5: warning: ‘return’ with no value, in function returning non-void 2466 | return; | ^~~~~~ std_funcs.c:2452:5: note: declared here 2452 | int update_shares_prior_multi(struct emission_dirichlet_s *em_di, struct hmm_multi_s *hmmp, | ^~~~~~~~~~~~~~~~~~~~~~~~~ std_funcs.c: In function ‘get_nr_alphabets’: std_funcs.c:2726:10: warning: ‘fgets’ writing 4000 bytes into a region of size 1000 overflows the destination [-Wstringop-overflow=] 2726 | if(fgets(s, MAX_LINE, hmmfile) != NULL) { | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ std_funcs.c:2719:8: note: destination object ‘s’ of size 1000 2719 | char s[1000]; | ^ In file included from /usr/i686-linux-gnu/include/stdio.h:964, from std_funcs.c:1: /usr/i686-linux-gnu/include/bits/stdio2.h:195:1: note: in a call to function ‘fgets’ declared with attribute ‘access (write_only, 1, 2)’ 195 | fgets (char *__restrict __s, int __n, FILE *__restrict __stream) | ^~~~~ std_funcs.c:2733:8: warning: ‘fgets’ writing 4000 bytes into a region of size 1000 overflows the destination [-Wstringop-overflow=] 2733 | if(fgets(s, MAX_LINE, hmmfile) != NULL) { | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ std_funcs.c:2719:8: note: destination object ‘s’ of size 1000 2719 | char s[1000]; | ^ /usr/i686-linux-gnu/include/bits/stdio2.h:195:1: note: in a call to function ‘fgets’ declared with attribute ‘access (write_only, 1, 2)’ 195 | fgets (char *__restrict __s, int __n, FILE *__restrict __stream) | ^~~~~ In function ‘fgets’, inlined from ‘get_nr_alphabets’ at std_funcs.c:2726:10: /usr/i686-linux-gnu/include/bits/stdio2.h:201:12: warning: call to ‘__fgets_chk_warn’ declared with attribute warning: fgets called with bigger size than length of destination buffer [-Wattribute-warning] 201 | return __fgets_chk_warn (__s, sz, __n, __stream); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘fgets’, inlined from ‘get_nr_alphabets’ at std_funcs.c:2733:8: /usr/i686-linux-gnu/include/bits/stdio2.h:201:12: warning: call to ‘__fgets_chk_warn’ declared with attribute warning: fgets called with bigger size than length of destination buffer [-Wattribute-warning] 201 | return __fgets_chk_warn (__s, sz, __n, __stream); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libtool: compile: i686-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c std_funcs.c -o std_funcs.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=compile i686-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o training_algorithms_multialpha.lo training_algorithms_multialpha.c libtool: compile: i686-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c training_algorithms_multialpha.c -fPIC -DPIC -o .libs/training_algorithms_multialpha.o training_algorithms_multialpha.c: In function ‘msa_baum_welch_dirichlet_multi’: training_algorithms_multialpha.c:701:26: warning: assignment to ‘int’ from ‘char *’ makes integer from pointer without a cast [-Wint-conversion] 701 | alphabet = hmmp->alphabet; | ^ training_algorithms_multialpha.c:710:26: warning: assignment to ‘int’ from ‘char *’ makes integer from pointer without a cast [-Wint-conversion] 710 | alphabet = hmmp->alphabet_2; | ^ training_algorithms_multialpha.c:719:26: warning: assignment to ‘int’ from ‘char *’ makes integer from pointer without a cast [-Wint-conversion] 719 | alphabet = hmmp->alphabet_3; | ^ training_algorithms_multialpha.c:728:26: warning: assignment to ‘int’ from ‘char *’ makes integer from pointer without a cast [-Wint-conversion] 728 | alphabet = hmmp->alphabet_4; | ^ training_algorithms_multialpha.c: In function ‘extended_msa_baum_welch_dirichlet_multi’: training_algorithms_multialpha.c:1639:26: warning: assignment to ‘int’ from ‘char *’ makes integer from pointer without a cast [-Wint-conversion] 1639 | alphabet = hmmp->alphabet; | ^ training_algorithms_multialpha.c:1646:26: warning: assignment to ‘int’ from ‘char *’ makes integer from pointer without a cast [-Wint-conversion] 1646 | alphabet = hmmp->alphabet_2; | ^ training_algorithms_multialpha.c:1653:26: warning: assignment to ‘int’ from ‘char *’ makes integer from pointer without a cast [-Wint-conversion] 1653 | alphabet = hmmp->alphabet_3; | ^ training_algorithms_multialpha.c:1660:26: warning: assignment to ‘int’ from ‘char *’ makes integer from pointer without a cast [-Wint-conversion] 1660 | alphabet = hmmp->alphabet_4; | ^ training_algorithms_multialpha.c:1784:26: warning: assignment to ‘int’ from ‘char *’ makes integer from pointer without a cast [-Wint-conversion] 1784 | alphabet = hmmp->alphabet; | ^ training_algorithms_multialpha.c:1791:26: warning: assignment to ‘int’ from ‘char *’ makes integer from pointer without a cast [-Wint-conversion] 1791 | alphabet = hmmp->alphabet_2; | ^ training_algorithms_multialpha.c:1798:26: warning: assignment to ‘int’ from ‘char *’ makes integer from pointer without a cast [-Wint-conversion] 1798 | alphabet = hmmp->alphabet_3; | ^ training_algorithms_multialpha.c:1805:26: warning: assignment to ‘int’ from ‘char *’ makes integer from pointer without a cast [-Wint-conversion] 1805 | alphabet = hmmp->alphabet_4; | ^ training_algorithms_multialpha.c: In function ‘add_to_E_multi’: training_algorithms_multialpha.c:3589:43: warning: passing argument 9 of ‘add_to_E_subst_mtx_dot_product_nr_occ’ makes pointer from integer without a cast [-Wint-conversion] 3589 | alphabet); | ^~~~~~~~ | | | int In file included from training_algorithms_multialpha.c:10: funcs.h:260:103: note: expected ‘char *’ but argument is of type ‘int’ 260 | int k, int a_size, int normalize, double *subst_mtx, char *alphabet); | ~~~~~~^~~~~~~~ training_algorithms_multialpha.c:3593:49: warning: passing argument 9 of ‘add_to_E_subst_mtx_dot_product_prior_nr_occ’ makes pointer from integer without a cast [-Wint-conversion] 3593 | alphabet); | ^~~~~~~~ | | | int funcs.h:262:102: note: expected ‘char *’ but argument is of type ‘int’ 262 | int k, int a_size, int normalize, double *subst_mtx, char *alphabet); | ~~~~~~^~~~~~~~ training_algorithms_multialpha.c:3618:36: warning: passing argument 9 of ‘add_to_E_subst_mtx_dot_product’ makes pointer from integer without a cast [-Wint-conversion] 3618 | alphabet); | ^~~~~~~~ | | | int funcs.h:241:96: note: expected ‘char *’ but argument is of type ‘int’ 241 | int k, int a_size, int normalize, double *subst_mtx, char *alphabet); | ~~~~~~^~~~~~~~ training_algorithms_multialpha.c:3622:42: warning: passing argument 9 of ‘add_to_E_subst_mtx_dot_product_prior’ makes pointer from integer without a cast [-Wint-conversion] 3622 | alphabet); | ^~~~~~~~ | | | int funcs.h:243:102: note: expected ‘char *’ but argument is of type ‘int’ 243 | int k, int a_size, int normalize, double *subst_mtx, char *alphabet); | ~~~~~~^~~~~~~~ libtool: compile: i686-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c training_algorithms_multialpha.c -o training_algorithms_multialpha.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=link i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -version-info 0:0:0 -Wl,-z,relro -Wl,-z,now -o libmodhmm.la -rpath /usr/lib/i386-linux-gnu core_algorithms_multialpha.lo debug_funcs.lo hmmsearch.lo readhmm.lo readhmm_multialpha.lo readseqs_multialpha.lo std_calculation_funcs.lo std_funcs.lo training_algorithms_multialpha.lo -lm libtool: link: i686-linux-gnu-gcc -shared -fPIC -DPIC .libs/core_algorithms_multialpha.o .libs/debug_funcs.o .libs/hmmsearch.o .libs/readhmm.o .libs/readhmm_multialpha.o .libs/readseqs_multialpha.o .libs/std_calculation_funcs.o .libs/std_funcs.o .libs/training_algorithms_multialpha.o -lm -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,libmodhmm.so.0 -o .libs/libmodhmm.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libmodhmm.so.0" && ln -s "libmodhmm.so.0.0.0" "libmodhmm.so.0") libtool: link: (cd ".libs" && rm -f "libmodhmm.so" && ln -s "libmodhmm.so.0.0.0" "libmodhmm.so") libtool: link: i686-linux-gnu-ar cr .libs/libmodhmm.a core_algorithms_multialpha.o debug_funcs.o hmmsearch.o readhmm.o readhmm_multialpha.o readseqs_multialpha.o std_calculation_funcs.o std_funcs.o training_algorithms_multialpha.o libtool: link: i686-linux-gnu-ranlib .libs/libmodhmm.a libtool: link: ( cd ".libs" && rm -f "libmodhmm.la" && ln -s "../libmodhmm.la" "libmodhmm.la" ) make[3]: Leaving directory '/<>/modhmm0.92b' make[3]: Entering directory '/<>' make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' dh: command-omitted: The call to "dh_auto_test -a" was omitted due to "DEB_BUILD_OPTIONS=nocheck" create-stamp debian/debhelper-build-stamp dh_prep -a debian/rules override_dh_auto_install make[1]: Entering directory '/<>' dh_auto_install make -j1 install DESTDIR=/<>/libpsortb-1.0\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no make[2]: Entering directory '/<>' Making install in svmloc make[3]: Entering directory '/<>/svmloc' make[4]: Entering directory '/<>/svmloc' /usr/bin/mkdir -p '/<>/debian/tmp/usr/lib/i386-linux-gnu' /bin/bash ../libtool --mode=install /usr/bin/install -c libsvmloc.la '/<>/debian/tmp/usr/lib/i386-linux-gnu' libtool: install: /usr/bin/install -c .libs/libsvmloc.so.0.0.0 /<>/debian/tmp/usr/lib/i386-linux-gnu/libsvmloc.so.0.0.0 libtool: install: (cd /<>/debian/tmp/usr/lib/i386-linux-gnu && { ln -s -f libsvmloc.so.0.0.0 libsvmloc.so.0 || { rm -f libsvmloc.so.0 && ln -s libsvmloc.so.0.0.0 libsvmloc.so.0; }; }) libtool: install: (cd /<>/debian/tmp/usr/lib/i386-linux-gnu && { ln -s -f libsvmloc.so.0.0.0 libsvmloc.so || { rm -f libsvmloc.so && ln -s libsvmloc.so.0.0.0 libsvmloc.so; }; }) libtool: install: /usr/bin/install -c .libs/libsvmloc.lai /<>/debian/tmp/usr/lib/i386-linux-gnu/libsvmloc.la libtool: install: /usr/bin/install -c .libs/libsvmloc.a /<>/debian/tmp/usr/lib/i386-linux-gnu/libsvmloc.a libtool: install: chmod 644 /<>/debian/tmp/usr/lib/i386-linux-gnu/libsvmloc.a libtool: install: i686-linux-gnu-ranlib /<>/debian/tmp/usr/lib/i386-linux-gnu/libsvmloc.a libtool: warning: remember to run 'libtool --finish /usr/lib/i386-linux-gnu' make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/svmloc' make[3]: Leaving directory '/<>/svmloc' Making install in modhmm0.92b make[3]: Entering directory '/<>/modhmm0.92b' make[4]: Entering directory '/<>/modhmm0.92b' /usr/bin/mkdir -p '/<>/debian/tmp/usr/lib/i386-linux-gnu' /bin/bash ../libtool --mode=install /usr/bin/install -c libmodhmm.la '/<>/debian/tmp/usr/lib/i386-linux-gnu' libtool: install: /usr/bin/install -c .libs/libmodhmm.so.0.0.0 /<>/debian/tmp/usr/lib/i386-linux-gnu/libmodhmm.so.0.0.0 libtool: install: (cd /<>/debian/tmp/usr/lib/i386-linux-gnu && { ln -s -f libmodhmm.so.0.0.0 libmodhmm.so.0 || { rm -f libmodhmm.so.0 && ln -s libmodhmm.so.0.0.0 libmodhmm.so.0; }; }) libtool: install: (cd /<>/debian/tmp/usr/lib/i386-linux-gnu && { ln -s -f libmodhmm.so.0.0.0 libmodhmm.so || { rm -f libmodhmm.so && ln -s libmodhmm.so.0.0.0 libmodhmm.so; }; }) libtool: install: /usr/bin/install -c .libs/libmodhmm.lai /<>/debian/tmp/usr/lib/i386-linux-gnu/libmodhmm.la libtool: install: /usr/bin/install -c .libs/libmodhmm.a /<>/debian/tmp/usr/lib/i386-linux-gnu/libmodhmm.a libtool: install: chmod 644 /<>/debian/tmp/usr/lib/i386-linux-gnu/libmodhmm.a libtool: install: i686-linux-gnu-ranlib /<>/debian/tmp/usr/lib/i386-linux-gnu/libmodhmm.a libtool: warning: remember to run 'libtool --finish /usr/lib/i386-linux-gnu' make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/modhmm0.92b' make[3]: Leaving directory '/<>/modhmm0.92b' make[3]: Entering directory '/<>' make[4]: Entering directory '/<>' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>' make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' d-shlibmove --commit \ --multiarch \ --devunversioned \ --exclude-la \ debian/tmp/usr/lib/*/libmodhmm.so Library package automatic movement utility set -e install -d -m 755 debian/libmodhmm-dev/usr/lib/i386-linux-gnu install -d -m 755 debian/libmodhmm0/usr/lib/i386-linux-gnu mv debian/tmp/usr/lib/i386-linux-gnu/libmodhmm.a debian/libmodhmm-dev/usr/lib/i386-linux-gnu mv debian/tmp/usr/lib/i386-linux-gnu/libmodhmm.so debian/libmodhmm-dev/usr/lib/i386-linux-gnu mv /<>/debian/tmp/usr/lib/i386-linux-gnu/libmodhmm.so.0 debian/libmodhmm0/usr/lib/i386-linux-gnu mv /<>/debian/tmp/usr/lib/i386-linux-gnu/libmodhmm.so.0.0.0 debian/libmodhmm0/usr/lib/i386-linux-gnu PKGDEV=libmodhmm-dev PKGSHL=libmodhmm0 d-shlibmove --commit \ --multiarch \ --devunversioned \ --exclude-la \ debian/tmp/usr/lib/*/libsvmloc.so Library package automatic movement utility --> libsvm-dev package exists. set -e install -d -m 755 debian/libsvmloc-dev/usr/lib/i386-linux-gnu install -d -m 755 debian/libsvmloc0/usr/lib/i386-linux-gnu mv debian/tmp/usr/lib/i386-linux-gnu/libsvmloc.a debian/libsvmloc-dev/usr/lib/i386-linux-gnu mv debian/tmp/usr/lib/i386-linux-gnu/libsvmloc.so debian/libsvmloc-dev/usr/lib/i386-linux-gnu mv /<>/debian/tmp/usr/lib/i386-linux-gnu/libsvmloc.so.0 debian/libsvmloc0/usr/lib/i386-linux-gnu mv /<>/debian/tmp/usr/lib/i386-linux-gnu/libsvmloc.so.0.0.0 debian/libsvmloc0/usr/lib/i386-linux-gnu PKGDEV=libsvmloc-dev PKGSHL=libsvmloc0 find debian -name "lib*.la" -delete make[1]: Leaving directory '/<>' dh_installdocs -a dh_installchangelogs -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'libmodhmm0' in '../libmodhmm0_1.0+dfsg-6_i386.deb'. dpkg-deb: building package 'libmodhmm0-dbgsym' in '../libmodhmm0-dbgsym_1.0+dfsg-6_i386.deb'. dpkg-deb: building package 'libmodhmm-dev' in '../libmodhmm-dev_1.0+dfsg-6_i386.deb'. dpkg-deb: building package 'libsvmloc0' in '../libsvmloc0_1.0+dfsg-6_i386.deb'. dpkg-deb: building package 'libsvmloc0-dbgsym' in '../libsvmloc0-dbgsym_1.0+dfsg-6_i386.deb'. dpkg-deb: building package 'libsvmloc-dev' in '../libsvmloc-dev_1.0+dfsg-6_i386.deb'. dpkg-genbuildinfo --build=any -O../libpsortb_1.0+dfsg-6_i386.buildinfo dpkg-genchanges --build=any -O../libpsortb_1.0+dfsg-6_i386.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2024-05-24T05:10:53Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ libpsortb_1.0+dfsg-6_i386.changes: ---------------------------------- Format: 1.8 Date: Thu, 11 Apr 2024 15:55:51 +0200 Source: libpsortb Binary: libmodhmm-dev libmodhmm0 libmodhmm0-dbgsym libsvmloc-dev libsvmloc0 libsvmloc0-dbgsym Built-For-Profiles: cross nocheck Architecture: i386 Version: 1.0+dfsg-6 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: libmodhmm-dev - library for constructing, training and scoring hidden Markov mode libmodhmm0 - library for constructing, training and scoring hidden Markov mode libsvmloc-dev - PSORTb adapted library for svm machine-learning library (dev) libsvmloc0 - PSORTb adapted library for svm machine-learning library Closes: 1066475 Changes: libpsortb (1.0+dfsg-6) unstable; urgency=medium . * Drop unused debug functions * Fix implicit declaration Closes: #1066475 * Add DEP3 Forwarded field * Build-Depends: s/pkg-config/pkgconf/ * Standards-Version: 4.7.0 (routine-update) Checksums-Sha1: 5b379b64c6c8a440aa31b5c5ca8146d4c1fa1800 81308 libmodhmm-dev_1.0+dfsg-6_i386.deb afcfd2cf256b2c15a0d9523357f93e045530537e 180636 libmodhmm0-dbgsym_1.0+dfsg-6_i386.deb f0d911fbe6b0fad68624de23f9b644f3a3b91db4 80052 libmodhmm0_1.0+dfsg-6_i386.deb 6b12316ce75623b4f9bc8e16dee605ce6116ca0c 7013 libpsortb_1.0+dfsg-6_i386.buildinfo 49b47560b3bfa3ecde96ea39931447c8cc1cbfae 13320 libsvmloc-dev_1.0+dfsg-6_i386.deb ece4930dee1c617dbffafbb92d262b77ad6d61f6 97852 libsvmloc0-dbgsym_1.0+dfsg-6_i386.deb 5c4b8659a572ef2c9cb4819ef42607da6cf4e30f 14384 libsvmloc0_1.0+dfsg-6_i386.deb Checksums-Sha256: 05f808ace8098abe94f33518a43c226a2b1db604ba8cf93a4941729ed975dcf1 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4a79d364e3e7023ba2f9070c12e5edb3d251c8285d2c9bb98f0c0070107e7f60 13320 libsvmloc-dev_1.0+dfsg-6_i386.deb 1206512cebcfcb559440631649fddc271dd799dff5d423fd0399bd18026ec086 97852 libsvmloc0-dbgsym_1.0+dfsg-6_i386.deb 19e8375ad84b3c6c4c2799c14f2d831a27fc349f9ef7a414df91ace02c8699a8 14384 libsvmloc0_1.0+dfsg-6_i386.deb Build-Origin: Debian Build-Architecture: arm64 Build-Date: Fri, 24 May 2024 05:10:51 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs Installed-Build-Depends: apt (= 2.9.3), autoconf (= 2.71-3), automake (= 1:1.16.5-1.3), autopoint (= 0.21-14), autotools-dev (= 20220109.1), base-files (= 13.2), base-passwd (= 3.6.3), bash (= 5.2.21-2+b1), binutils (= 2.42-4), binutils-aarch64-linux-gnu (= 2.42-4), binutils-common (= 2.42-4), bsdextrautils (= 2.40.1-1), bsdutils (= 1:2.40.1-1), build-essential (= 12.10), bzip2 (= 1.0.8-5.1), coreutils (= 9.4-3.1), cpp (= 4:13.2.0-7), cpp-13 (= 13.2.0-25), cpp-13-aarch64-linux-gnu (= 13.2.0-25), cpp-aarch64-linux-gnu (= 4:13.2.0-7), d-shlibs (= 0.106), dash (= 0.5.12-8), debconf (= 1.5.86), debhelper (= 13.15.3), debian-archive-keyring (= 2023.4), debianutils (= 5.17), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.13.1-1), diffutils (= 1:3.10-1), dpkg (= 1.22.6), dpkg-dev (= 1.22.6), dwz (= 0.15-1+b1), file (= 1:5.45-3), findutils (= 4.9.0-5), g++ (= 4:13.2.0-7), g++-13 (= 13.2.0-25), g++-13-aarch64-linux-gnu (= 13.2.0-25), g++-aarch64-linux-gnu (= 4:13.2.0-7), gcc (= 4:13.2.0-7), gcc-13 (= 13.2.0-25), gcc-13-aarch64-linux-gnu (= 13.2.0-25), gcc-13-base (= 13.2.0-25), gcc-14-base (= 14.1.0-1), gcc-aarch64-linux-gnu (= 4:13.2.0-7), gettext (= 0.21-14+b1), gettext-base (= 0.21-14+b1), gpgv (= 2.2.43-6), grep (= 3.11-4), groff-base (= 1.23.0-4), gzip (= 1.12-1.1), hostname (= 3.23+nmu2), init-system-helpers (= 1.66), intltool-debian (= 0.35.0+20060710.6), libacl1 (= 2.3.2-2), libapt-pkg6.0t64 (= 2.9.3), libarchive-zip-perl (= 1.68-1), libasan8 (= 14.1.0-1), libatomic1 (= 14.1.0-1), libattr1 (= 1:2.5.2-1), libaudit-common (= 1:3.1.2-2.1), libaudit1 (= 1:3.1.2-2.1), libbinutils (= 2.42-4), libblkid1 (= 2.40.1-1), libbz2-1.0 (= 1.0.8-5.1), libc-bin (= 2.38-11), libc-dev-bin (= 2.38-11), libc6 (= 2.38-11), libc6-dev (= 2.38-11), libcap-ng0 (= 0.8.5-1), libcap2 (= 1:2.66-5), libcc1-0 (= 14.1.0-1), libcrypt-dev (= 1:4.4.36-4), libcrypt1 (= 1:4.4.36-4), libctf-nobfd0 (= 2.42-4), libctf0 (= 2.42-4), libdata-optlist-perl (= 0.114-1), libdb5.3t64 (= 5.3.28+dfsg2-7), libdebconfclient0 (= 0.271+b3), libdebhelper-perl (= 13.15.3), libdpkg-perl (= 1.22.6), libelf1t64 (= 0.191-1+b1), libffi8 (= 3.4.6-1), libfile-find-rule-perl (= 0.34-3), libfile-stripnondeterminism-perl (= 1.13.1-1), libgcc-13-dev (= 13.2.0-25), libgcc-s1 (= 14.1.0-1), libgcrypt20 (= 1.10.3-3), libgdbm-compat4t64 (= 1.23-5.1+b1), libgdbm6t64 (= 1.23-5.1+b1), libgmp10 (= 2:6.3.0+dfsg-2+b1), libgnutls30t64 (= 3.8.5-2), libgomp1 (= 14.1.0-1), libgpg-error0 (= 1.49-2), libgprofng0 (= 2.42-4), libhmmer2-dev (= 2.3.2+dfsg-12), libhogweed6t64 (= 3.9.1-2.2), libhwasan0 (= 14.1.0-1), libicu72 (= 72.1-4+b1), libidn2-0 (= 2.3.7-2), libisl23 (= 0.26-3+b2), libitm1 (= 14.1.0-1), libjansson4 (= 2.14-2+b2), liblsan0 (= 14.1.0-1), liblz4-1 (= 1.9.4-2), liblzma5 (= 5.6.1+really5.4.5-1), libmagic-mgc (= 1:5.45-3), libmagic1t64 (= 1:5.45-3), libmd0 (= 1.1.0-2), libmount1 (= 2.40.1-1), libmpc3 (= 1.3.1-1+b2), libmpfr6 (= 4.2.1-1+b1), libnettle8t64 (= 3.9.1-2.2), libnumber-compare-perl (= 0.03-3), libp11-kit0 (= 0.25.3-5), libpam-modules (= 1.5.3-7), libpam-modules-bin (= 1.5.3-7), libpam-runtime (= 1.5.3-7), libpam0g (= 1.5.3-7), libparams-util-perl (= 1.102-3), libpcre2-8-0 (= 10.42-4+b1), libperl5.38t64 (= 5.38.2-4), libpipeline1 (= 1.5.7-2), libpkgconf3 (= 1.8.1-1+b2), libseccomp2 (= 2.5.5-1), libselinux1 (= 3.5-2+b2), libsframe1 (= 2.42-4), libsmartcols1 (= 2.40.1-1), libsquid-dev (= 1.9g+cvs20050121-15.1), libsquid1t64 (= 1.9g+cvs20050121-15.1), libssl3t64 (= 3.2.1-3), libstdc++-13-dev (= 13.2.0-25), libstdc++6 (= 14.1.0-1), libsub-exporter-perl (= 0.990-1), libsub-install-perl (= 0.929-1), libsub-override-perl (= 0.11-1), libsub-prototype-perl (= 0.03-2+b2), libsvm-dev (= 3.24+ds-6+b1), libsvm3 (= 3.24+ds-6+b1), libsystemd0 (= 256~rc3-2), libtasn1-6 (= 4.19.0-3+b2), libtext-glob-perl (= 0.11-3), libtinfo6 (= 6.5-2), libtool (= 2.4.7-7), libtsan2 (= 14.1.0-1), libubsan1 (= 14.1.0-1), libuchardet0 (= 0.0.8-1+b1), libudev1 (= 256~rc3-2), libunistring5 (= 1.2-1), libuuid1 (= 2.40.1-1), libxml2 (= 2.9.14+dfsg-1.3+b3), libxxhash0 (= 0.8.2-2+b1), libzstd1 (= 1.5.5+dfsg2-2), linux-libc-dev (= 6.8.9-1), login (= 1:4.13+dfsg1-4), m4 (= 1.4.19-4), make (= 4.3-4.1), man-db (= 2.12.1-1), mawk (= 1.3.4.20240123-1), ncurses-base (= 6.5-2), ncurses-bin (= 6.5-2), patch (= 2.7.6-7), perl (= 5.38.2-4), perl-base (= 5.38.2-4), perl-modules-5.38 (= 5.38.2-4), pkgconf (= 1.8.1-1+b2), pkgconf-bin (= 1.8.1-1+b2), po-debconf (= 1.0.21+nmu1), rpcsvc-proto (= 1.4.3-1), sed (= 4.9-2), sensible-utils (= 0.0.22), sysvinit-utils (= 3.09-1), tar (= 1.35+dfsg-3), usrmerge (= 39), util-linux (= 2.40.1-1), xz-utils (= 5.6.1+really5.4.5-1), zlib1g (= 1:1.3.dfsg+really1.3.1-1) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="en_GB.UTF-8" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1712843751" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ libmodhmm-dev_1.0+dfsg-6_i386.deb --------------------------------- new Debian package, version 2.0. size 81308 bytes: control archive=992 bytes. 1027 bytes, 24 lines control 298 bytes, 4 lines md5sums Package: libmodhmm-dev Source: libpsortb Version: 1.0+dfsg-6 Architecture: i386 Maintainer: Debian Med Packaging Team Installed-Size: 308 Depends: libmodhmm0 (= 1.0+dfsg-6) Section: libdevel Priority: optional Multi-Arch: same Homepage: https://www.psort.org/ Description: library for constructing, training and scoring hidden Markov models (dev) Library for constructing, training and scoring hidden Markov models. It is provided with PSORTb but might be used separately. . PSORTb enables prediction of bacterial protein subcellular localization (SCL) and provides a quick and inexpensive means for gaining insight into protein function, verifying experimental results, annotating newly sequenced bacterial genomes, detecting potential cell surface/secreted drug targets, as well as identifying biomarkers for microbes. . This library needed by PSORTb is distributed separately by upstream. . This package contains the static library which is needed to link PSORTb. drwxr-xr-x root/root 0 2024-04-11 13:55 ./ drwxr-xr-x root/root 0 2024-04-11 13:55 ./usr/ drwxr-xr-x root/root 0 2024-04-11 13:55 ./usr/lib/ drwxr-xr-x root/root 0 2024-04-11 13:55 ./usr/lib/i386-linux-gnu/ -rw-r--r-- root/root 301970 2024-04-11 13:55 ./usr/lib/i386-linux-gnu/libmodhmm.a lrwxrwxrwx root/root 0 2024-04-11 13:55 ./usr/lib/i386-linux-gnu/libmodhmm.so -> libmodhmm.so.0.0.0 drwxr-xr-x root/root 0 2024-04-11 13:55 ./usr/share/ drwxr-xr-x root/root 0 2024-04-11 13:55 ./usr/share/doc/ drwxr-xr-x root/root 0 2024-04-11 13:55 ./usr/share/doc/libmodhmm-dev/ -rw-r--r-- root/root 718 2024-04-11 13:55 ./usr/share/doc/libmodhmm-dev/changelog.Debian.gz -rw-r--r-- root/root 59 2008-08-14 16:47 ./usr/share/doc/libmodhmm-dev/changelog.gz -rw-r--r-- root/root 1416 2024-04-11 13:55 ./usr/share/doc/libmodhmm-dev/copyright libmodhmm0-dbgsym_1.0+dfsg-6_i386.deb ------------------------------------- new Debian package, version 2.0. size 180636 bytes: control archive=556 bytes. 403 bytes, 13 lines control 106 bytes, 1 lines md5sums Package: libmodhmm0-dbgsym Source: libpsortb Version: 1.0+dfsg-6 Auto-Built-Package: debug-symbols Architecture: i386 Maintainer: Debian Med Packaging Team Installed-Size: 195 Depends: libmodhmm0 (= 1.0+dfsg-6) Section: debug Priority: optional Multi-Arch: same Description: debug symbols for libmodhmm0 Build-Ids: ed41311fa028eda4b2ead1ec184671d685a9ccfa drwxr-xr-x root/root 0 2024-04-11 13:55 ./ drwxr-xr-x root/root 0 2024-04-11 13:55 ./usr/ drwxr-xr-x root/root 0 2024-04-11 13:55 ./usr/lib/ drwxr-xr-x root/root 0 2024-04-11 13:55 ./usr/lib/debug/ drwxr-xr-x root/root 0 2024-04-11 13:55 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2024-04-11 13:55 ./usr/lib/debug/.build-id/ed/ -rw-r--r-- root/root 188436 2024-04-11 13:55 ./usr/lib/debug/.build-id/ed/41311fa028eda4b2ead1ec184671d685a9ccfa.debug drwxr-xr-x root/root 0 2024-04-11 13:55 ./usr/share/ drwxr-xr-x root/root 0 2024-04-11 13:55 ./usr/share/doc/ lrwxrwxrwx root/root 0 2024-04-11 13:55 ./usr/share/doc/libmodhmm0-dbgsym -> libmodhmm0 libmodhmm0_1.0+dfsg-6_i386.deb ------------------------------ new Debian package, version 2.0. size 80052 bytes: control archive=1084 bytes. 1003 bytes, 24 lines control 296 bytes, 4 lines md5sums 37 bytes, 1 lines shlibs 68 bytes, 2 lines triggers Package: libmodhmm0 Source: libpsortb Version: 1.0+dfsg-6 Architecture: i386 Maintainer: Debian Med Packaging Team Installed-Size: 269 Depends: libc6 (>= 2.29) Section: libs Priority: optional Multi-Arch: same Homepage: https://www.psort.org/ Description: library for constructing, training and scoring hidden Markov models Library for constructing, training and scoring hidden Markov models. It is provided with PSORTb but might be used separately. . PSORTb enables prediction of bacterial protein subcellular localization (SCL) and provides a quick and inexpensive means for gaining insight into protein function, verifying experimental results, annotating newly sequenced bacterial genomes, detecting potential cell surface/secreted drug targets, as well as identifying biomarkers for microbes. . This library needed by PSORTb is distributed separately by upstream. . This package contains the shared library which is needed to run PSORTb. drwxr-xr-x root/root 0 2024-04-11 13:55 ./ drwxr-xr-x root/root 0 2024-04-11 13:55 ./usr/ drwxr-xr-x root/root 0 2024-04-11 13:55 ./usr/lib/ drwxr-xr-x root/root 0 2024-04-11 13:55 ./usr/lib/i386-linux-gnu/ lrwxrwxrwx root/root 0 2024-04-11 13:55 ./usr/lib/i386-linux-gnu/libmodhmm.so.0 -> libmodhmm.so.0.0.0 -rw-r--r-- root/root 259328 2024-04-11 13:55 ./usr/lib/i386-linux-gnu/libmodhmm.so.0.0.0 drwxr-xr-x root/root 0 2024-04-11 13:55 ./usr/share/ drwxr-xr-x root/root 0 2024-04-11 13:55 ./usr/share/doc/ drwxr-xr-x root/root 0 2024-04-11 13:55 ./usr/share/doc/libmodhmm0/ -rw-r--r-- root/root 716 2024-04-11 13:55 ./usr/share/doc/libmodhmm0/changelog.Debian.gz -rw-r--r-- root/root 59 2008-08-14 16:47 ./usr/share/doc/libmodhmm0/changelog.gz -rw-r--r-- root/root 1416 2024-04-11 13:55 ./usr/share/doc/libmodhmm0/copyright libsvmloc-dev_1.0+dfsg-6_i386.deb --------------------------------- new Debian package, version 2.0. size 13320 bytes: control archive=1120 bytes. 1287 bytes, 30 lines control 298 bytes, 4 lines md5sums Package: libsvmloc-dev Source: libpsortb Version: 1.0+dfsg-6 Architecture: i386 Maintainer: Debian Med Packaging Team Installed-Size: 40 Depends: libsvmloc0 (= 1.0+dfsg-6), libsvm-dev Section: libdevel Priority: optional Multi-Arch: same Homepage: https://www.psort.org/ Description: PSORTb adapted library for svm machine-learning library (dev) Libsvm is a machine-learning library which is an easy-to-use package for support vector classification, regression and one-class SVM. It supports multi-class classification, probability outputs, and parameter selection. . PSORTb was featuring a code copy plus some local additions. This library is linked against the Debian packaged libsvn and just contains the PSORTb extensions. . PSORTb enables prediction of bacterial protein subcellular localization (SCL) and provides a quick and inexpensive means for gaining insight into protein function, verifying experimental results, annotating newly sequenced bacterial genomes, detecting potential cell surface/secreted drug targets, as well as identifying biomarkers for microbes. . This library needed by PSORTb is distributed separately by upstream. . This package contains the static library which is needed to link PSORTb. drwxr-xr-x root/root 0 2024-04-11 13:55 ./ drwxr-xr-x root/root 0 2024-04-11 13:55 ./usr/ drwxr-xr-x root/root 0 2024-04-11 13:55 ./usr/lib/ drwxr-xr-x root/root 0 2024-04-11 13:55 ./usr/lib/i386-linux-gnu/ -rw-r--r-- root/root 27172 2024-04-11 13:55 ./usr/lib/i386-linux-gnu/libsvmloc.a lrwxrwxrwx root/root 0 2024-04-11 13:55 ./usr/lib/i386-linux-gnu/libsvmloc.so -> libsvmloc.so.0.0.0 drwxr-xr-x root/root 0 2024-04-11 13:55 ./usr/share/ drwxr-xr-x root/root 0 2024-04-11 13:55 ./usr/share/doc/ drwxr-xr-x root/root 0 2024-04-11 13:55 ./usr/share/doc/libsvmloc-dev/ -rw-r--r-- root/root 715 2024-04-11 13:55 ./usr/share/doc/libsvmloc-dev/changelog.Debian.gz -rw-r--r-- root/root 59 2008-08-14 16:47 ./usr/share/doc/libsvmloc-dev/changelog.gz -rw-r--r-- root/root 1416 2024-04-11 13:55 ./usr/share/doc/libsvmloc-dev/copyright libsvmloc0-dbgsym_1.0+dfsg-6_i386.deb ------------------------------------- new Debian package, version 2.0. size 97852 bytes: control archive=560 bytes. 403 bytes, 13 lines control 106 bytes, 1 lines md5sums Package: libsvmloc0-dbgsym Source: libpsortb Version: 1.0+dfsg-6 Auto-Built-Package: debug-symbols Architecture: i386 Maintainer: Debian Med Packaging Team Installed-Size: 110 Depends: libsvmloc0 (= 1.0+dfsg-6) Section: debug Priority: optional Multi-Arch: same Description: debug symbols for libsvmloc0 Build-Ids: 423a2618ae0cab89fd4f31de8be809c1d12598a1 drwxr-xr-x root/root 0 2024-04-11 13:55 ./ drwxr-xr-x root/root 0 2024-04-11 13:55 ./usr/ drwxr-xr-x root/root 0 2024-04-11 13:55 ./usr/lib/ drwxr-xr-x root/root 0 2024-04-11 13:55 ./usr/lib/debug/ drwxr-xr-x root/root 0 2024-04-11 13:55 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2024-04-11 13:55 ./usr/lib/debug/.build-id/42/ -rw-r--r-- root/root 101728 2024-04-11 13:55 ./usr/lib/debug/.build-id/42/3a2618ae0cab89fd4f31de8be809c1d12598a1.debug drwxr-xr-x root/root 0 2024-04-11 13:55 ./usr/share/ drwxr-xr-x root/root 0 2024-04-11 13:55 ./usr/share/doc/ lrwxrwxrwx root/root 0 2024-04-11 13:55 ./usr/share/doc/libsvmloc0-dbgsym -> libsvmloc0 libsvmloc0_1.0+dfsg-6_i386.deb ------------------------------ new Debian package, version 2.0. size 14384 bytes: control archive=1252 bytes. 1313 bytes, 30 lines control 296 bytes, 4 lines md5sums 37 bytes, 1 lines shlibs 68 bytes, 2 lines triggers Package: libsvmloc0 Source: libpsortb Version: 1.0+dfsg-6 Architecture: i386 Maintainer: Debian Med Packaging Team Installed-Size: 45 Depends: libsvm3 (>= 3.21+ds), libc6 (>= 2.4), libgcc-s1 (>= 3.0), libstdc++6 (>= 13.1) Section: libs Priority: optional Multi-Arch: same Homepage: https://www.psort.org/ Description: PSORTb adapted library for svm machine-learning library Libsvm is a machine-learning library which is an easy-to-use package for support vector classification, regression and one-class SVM. It supports multi-class classification, probability outputs, and parameter selection. . PSORTb was featuring a code copy plus some local additions. This library is linked against the Debian packaged libsvn and just contains the PSORTb extensions. . PSORTb enables prediction of bacterial protein subcellular localization (SCL) and provides a quick and inexpensive means for gaining insight into protein function, verifying experimental results, annotating newly sequenced bacterial genomes, detecting potential cell surface/secreted drug targets, as well as identifying biomarkers for microbes. . This library needed by PSORTb is distributed separately by upstream. . This package contains the shared library which is needed to run PSORb. drwxr-xr-x root/root 0 2024-04-11 13:55 ./ drwxr-xr-x root/root 0 2024-04-11 13:55 ./usr/ drwxr-xr-x root/root 0 2024-04-11 13:55 ./usr/lib/ drwxr-xr-x root/root 0 2024-04-11 13:55 ./usr/lib/i386-linux-gnu/ lrwxrwxrwx root/root 0 2024-04-11 13:55 ./usr/lib/i386-linux-gnu/libsvmloc.so.0 -> libsvmloc.so.0.0.0 -rw-r--r-- root/root 30012 2024-04-11 13:55 ./usr/lib/i386-linux-gnu/libsvmloc.so.0.0.0 drwxr-xr-x root/root 0 2024-04-11 13:55 ./usr/share/ drwxr-xr-x root/root 0 2024-04-11 13:55 ./usr/share/doc/ drwxr-xr-x root/root 0 2024-04-11 13:55 ./usr/share/doc/libsvmloc0/ -rw-r--r-- root/root 713 2024-04-11 13:55 ./usr/share/doc/libsvmloc0/changelog.Debian.gz -rw-r--r-- root/root 59 2008-08-14 16:47 ./usr/share/doc/libsvmloc0/changelog.gz -rw-r--r-- root/root 1416 2024-04-11 13:55 ./usr/share/doc/libsvmloc0/copyright lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:arm64 Filtered Build-Depends: lintian:arm64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/apt_archive/sbuild-build-depends-lintian-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [615 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [1353 B] Get:5 copy:/<>/apt_archive ./ Packages [1430 B] Fetched 3398 B in 0s (189 kB/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Execute external solver... The following additional packages will be installed: ca-certificates diffstat gpg gpgconf iso-codes libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libberkeleydb-perl libcapture-tiny-perl libcgi-pm-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-validate-domain-perl libdata-validate-ip-perl libdata-validate-uri-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libencode-locale-perl libexception-class-perl libfile-basedir-perl libfile-listing-perl libfont-ttf-perl libhtml-form-perl libhtml-html5-entities-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tokeparser-simple-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libimport-into-perl libio-html-perl libio-interactive-perl libio-socket-ssl-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-someutils-perl liblist-utilsby-perl liblwp-mediatypes-perl liblwp-protocol-https-perl liblz1 liblzo2-2 libmarkdown2 libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnet-http-perl libnet-ipv6addr-perl libnet-netmask-perl libnet-ssleay-perl libnetaddr-ip-perl libpackage-stash-perl libparams-classify-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl libreadline8t64 libregexp-wildcards-perl librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libsqlite3-0 libstrictures-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-name-perl libsub-quote-perl libsyntax-keyword-try-perl libterm-readkey-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libwww-mechanize-perl libwww-perl libwww-robotrules-perl libxs-parse-keyword-perl libyaml-0-2 libyaml-libyaml-perl lintian lzop netbase openssl patchutils perl-openssl-defaults plzip readline-common t1utils unzip Suggested packages: isoquery libxml-parser-perl libdata-dump-perl libcrypt-ssleay-perl libscalar-number-perl libbareword-filehandles-perl libindirect-perl libmultidimensional-perl libbusiness-isbn-perl libregexp-ipv6-perl libauthen-ntlm-perl binutils-multiarch libtext-template-perl readline-doc zip Recommended packages: gnupg libcgi-fast-perl libhtml-format-perl libio-compress-brotli-perl liblist-someutils-xs-perl libfreezethaw-perl libmath-base85-perl libsocket6-perl libpackage-stash-xs-perl libxstring-perl libdata-dump-perl libhttp-daemon-perl libmailtools-perl The following NEW packages will be installed: ca-certificates diffstat gpg gpgconf iso-codes libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libberkeleydb-perl libcapture-tiny-perl libcgi-pm-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-validate-domain-perl libdata-validate-ip-perl libdata-validate-uri-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libencode-locale-perl libexception-class-perl libfile-basedir-perl libfile-listing-perl libfont-ttf-perl libhtml-form-perl libhtml-html5-entities-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tokeparser-simple-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libimport-into-perl libio-html-perl libio-interactive-perl libio-socket-ssl-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-someutils-perl liblist-utilsby-perl liblwp-mediatypes-perl liblwp-protocol-https-perl liblz1 liblzo2-2 libmarkdown2 libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnet-http-perl libnet-ipv6addr-perl libnet-netmask-perl libnet-ssleay-perl libnetaddr-ip-perl libpackage-stash-perl libparams-classify-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl libreadline8t64 libregexp-wildcards-perl librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libsqlite3-0 libstrictures-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-name-perl libsub-quote-perl libsyntax-keyword-try-perl libterm-readkey-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libwww-mechanize-perl libwww-perl libwww-robotrules-perl libxs-parse-keyword-perl libyaml-0-2 libyaml-libyaml-perl lintian lzop netbase openssl patchutils perl-openssl-defaults plzip readline-common sbuild-build-depends-lintian-dummy:i386 t1utils unzip 0 upgraded, 122 newly installed, 0 to remove and 0 not upgraded. Need to get 12.4 MB of archives. After this operation, 52.3 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-lintian-dummy 0.invalid.0 [848 B] Get:2 http://mirror.einval.org/debian unstable/main arm64 netbase all 6.4 [12.8 kB] Get:3 http://mirror.einval.org/debian unstable/main arm64 readline-common all 8.2-4 [69.3 kB] Get:4 http://mirror.einval.org/debian unstable/main arm64 openssl arm64 3.2.1-3 [1324 kB] Get:5 http://mirror.einval.org/debian unstable/main arm64 ca-certificates all 20240203 [158 kB] Get:6 http://mirror.einval.org/debian unstable/main arm64 diffstat arm64 1.66-1 [31.6 kB] Get:7 http://mirror.einval.org/debian unstable/main arm64 libassuan0 arm64 2.5.6-1+b1 [48.0 kB] Get:8 http://mirror.einval.org/debian unstable/main arm64 libreadline8t64 arm64 8.2-4 [157 kB] Get:9 http://mirror.einval.org/debian unstable/main arm64 gpgconf arm64 2.2.43-6 [112 kB] Get:10 http://mirror.einval.org/debian unstable/main arm64 libsqlite3-0 arm64 3.45.3-1 [837 kB] Get:11 http://mirror.einval.org/debian unstable/main arm64 gpg arm64 2.2.43-6 [477 kB] Get:12 http://mirror.einval.org/debian unstable/main arm64 iso-codes all 4.16.0-1 [2936 kB] Get:13 http://mirror.einval.org/debian unstable/main arm64 libaliased-perl all 0.34-3 [13.5 kB] Get:14 http://mirror.einval.org/debian unstable/main arm64 libapt-pkg-perl arm64 0.1.40+b5 [63.8 kB] Get:15 http://mirror.einval.org/debian unstable/main arm64 libb-hooks-op-check-perl arm64 0.22-3+b1 [10.6 kB] Get:16 http://mirror.einval.org/debian unstable/main arm64 libdynaloader-functions-perl all 0.003-3 [12.7 kB] Get:17 http://mirror.einval.org/debian unstable/main arm64 libdevel-callchecker-perl arm64 0.009-1 [16.0 kB] Get:18 http://mirror.einval.org/debian unstable/main arm64 libparams-classify-perl arm64 0.015-2+b3 [22.3 kB] Get:19 http://mirror.einval.org/debian unstable/main arm64 libmodule-runtime-perl all 0.016-2 [19.6 kB] Get:20 http://mirror.einval.org/debian unstable/main arm64 libtry-tiny-perl all 0.31-2 [22.6 kB] Get:21 http://mirror.einval.org/debian unstable/main arm64 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libiterator-perl all 0.03+ds1-2 [18.8 kB] Get:41 http://mirror.einval.org/debian unstable/main arm64 libiterator-util-perl all 0.02+ds1-2 [14.0 kB] Get:42 http://mirror.einval.org/debian unstable/main arm64 libdata-dpath-perl all 0.59-1 [43.6 kB] Get:43 http://mirror.einval.org/debian unstable/main arm64 libdata-messagepack-perl arm64 1.02-1+b3 [31.2 kB] Get:44 http://mirror.einval.org/debian unstable/main arm64 libnet-domain-tld-perl all 1.75-3 [31.9 kB] Get:45 http://mirror.einval.org/debian unstable/main arm64 libdata-validate-domain-perl all 0.10-1.1 [11.1 kB] Get:46 http://mirror.einval.org/debian unstable/main arm64 libnet-ipv6addr-perl all 1.02-1 [21.7 kB] Get:47 http://mirror.einval.org/debian unstable/main arm64 libnet-netmask-perl all 2.0002-2 [28.6 kB] Get:48 http://mirror.einval.org/debian unstable/main arm64 libnetaddr-ip-perl arm64 4.079+dfsg-2+b3 [97.6 kB] Get:49 http://mirror.einval.org/debian unstable/main arm64 libdata-validate-ip-perl all 0.31-1 [20.6 kB] Get:50 http://mirror.einval.org/debian unstable/main arm64 libdata-validate-uri-perl all 0.07-3 [11.0 kB] Get:51 http://mirror.einval.org/debian unstable/main arm64 libdevel-size-perl arm64 0.84-1 [23.7 kB] Get:52 http://mirror.einval.org/debian unstable/main arm64 libemail-address-xs-perl arm64 1.05-1+b3 [28.3 kB] Get:53 http://mirror.einval.org/debian unstable/main arm64 libencode-locale-perl all 1.05-3 [12.9 kB] Get:54 http://mirror.einval.org/debian unstable/main arm64 libipc-system-simple-perl all 1.30-2 [26.8 kB] Get:55 http://mirror.einval.org/debian unstable/main arm64 libfile-basedir-perl all 0.09-2 [15.1 kB] Get:56 http://mirror.einval.org/debian unstable/main arm64 libtimedate-perl all 2.3300-2 [39.3 kB] Get:57 http://mirror.einval.org/debian unstable/main arm64 libhttp-date-perl all 6.06-1 [10.7 kB] Get:58 http://mirror.einval.org/debian unstable/main arm64 libfile-listing-perl all 6.16-1 [12.4 kB] Get:59 http://mirror.einval.org/debian unstable/main arm64 libfont-ttf-perl all 1.06-2 [318 kB] Get:60 http://mirror.einval.org/debian unstable/main arm64 libio-html-perl all 1.004-3 [16.2 kB] Get:61 http://mirror.einval.org/debian unstable/main arm64 liblwp-mediatypes-perl all 6.04-2 [20.2 kB] Get:62 http://mirror.einval.org/debian unstable/main arm64 libhttp-message-perl all 6.45-1 [82.0 kB] Get:63 http://mirror.einval.org/debian unstable/main arm64 libhtml-form-perl all 6.11-1 [33.1 kB] Get:64 http://mirror.einval.org/debian unstable/main arm64 libhtml-html5-entities-perl all 0.004-3 [21.0 kB] Get:65 http://mirror.einval.org/debian unstable/main arm64 libhtml-tree-perl all 5.07-3 [211 kB] Get:66 http://mirror.einval.org/debian unstable/main arm64 libhttp-cookies-perl all 6.11-1 [19.1 kB] Get:67 http://mirror.einval.org/debian unstable/main arm64 libhttp-negotiate-perl all 6.01-2 [13.1 kB] Get:68 http://mirror.einval.org/debian unstable/main arm64 perl-openssl-defaults arm64 7+b2 [6712 B] Get:69 http://mirror.einval.org/debian unstable/main arm64 libnet-ssleay-perl arm64 1.94-1+b1 [328 kB] Get:70 http://mirror.einval.org/debian unstable/main arm64 libio-socket-ssl-perl all 2.085-1 [218 kB] Get:71 http://mirror.einval.org/debian unstable/main arm64 libnet-http-perl all 6.23-1 [23.9 kB] Get:72 http://mirror.einval.org/debian unstable/main arm64 liblwp-protocol-https-perl all 6.14-1 [10.8 kB] Get:73 http://mirror.einval.org/debian unstable/main arm64 libwww-robotrules-perl all 6.02-1 [12.9 kB] Get:74 http://mirror.einval.org/debian unstable/main arm64 libwww-perl all 6.77-1 [183 kB] Get:75 http://mirror.einval.org/debian unstable/main arm64 libhtml-tokeparser-simple-perl all 3.16-4 [39.1 kB] Get:76 http://mirror.einval.org/debian unstable/main arm64 libimport-into-perl all 1.002005-2 [11.3 kB] Get:77 http://mirror.einval.org/debian unstable/main arm64 libio-interactive-perl all 1.025-1 [11.4 kB] Get:78 http://mirror.einval.org/debian unstable/main arm64 libipc-run3-perl all 0.049-1 [31.5 kB] Get:79 http://mirror.einval.org/debian unstable/main arm64 libjson-maybexs-perl all 1.004005-1 [12.9 kB] Get:80 http://mirror.einval.org/debian unstable/main arm64 liblist-compare-perl all 0.55-2 [65.7 kB] Get:81 http://mirror.einval.org/debian unstable/main arm64 liblist-someutils-perl all 0.59-1 [37.1 kB] Get:82 http://mirror.einval.org/debian unstable/main arm64 liblist-utilsby-perl all 0.12-2 [15.5 kB] Get:83 http://mirror.einval.org/debian unstable/main arm64 liblz1 arm64 1.15~pre1-1 [37.7 kB] Get:84 http://mirror.einval.org/debian unstable/main arm64 liblzo2-2 arm64 2.10-2+b1 [49.2 kB] Get:85 http://mirror.einval.org/debian unstable/main arm64 libmarkdown2 arm64 2.2.7-2+b1 [33.2 kB] Get:86 http://mirror.einval.org/debian unstable/main arm64 libmldbm-perl all 2.05-4 [16.8 kB] Get:87 http://mirror.einval.org/debian unstable/main arm64 librole-tiny-perl all 2.002004-1 [21.4 kB] Get:88 http://mirror.einval.org/debian unstable/main arm64 libsub-quote-perl all 2.006008-1 [21.8 kB] Get:89 http://mirror.einval.org/debian unstable/main arm64 libmoo-perl all 2.005005-1 [58.0 kB] Get:90 http://mirror.einval.org/debian unstable/main arm64 libstrictures-perl all 2.000006-1 [18.6 kB] Get:91 http://mirror.einval.org/debian unstable/main arm64 libmoox-aliases-perl all 0.001006-2 [7156 B] Get:92 http://mirror.einval.org/debian unstable/main arm64 libmouse-perl arm64 2.5.10-1+b5 [141 kB] Get:93 http://mirror.einval.org/debian unstable/main arm64 libpackage-stash-perl all 0.40-1 [22.0 kB] Get:94 http://mirror.einval.org/debian unstable/main arm64 libsub-identify-perl arm64 0.14-3+b2 [11.2 kB] Get:95 http://mirror.einval.org/debian unstable/main arm64 libsub-name-perl arm64 0.27-1+b2 [12.3 kB] Get:96 http://mirror.einval.org/debian unstable/main arm64 libnamespace-clean-perl all 0.27-2 [17.8 kB] Get:97 http://mirror.einval.org/debian unstable/main arm64 libpath-tiny-perl all 0.144-1 [56.4 kB] Get:98 http://mirror.einval.org/debian unstable/main arm64 libperlio-gzip-perl arm64 0.20-1+b3 [17.4 kB] Get:99 http://mirror.einval.org/debian unstable/main arm64 libperlio-utf8-strict-perl arm64 0.010-1+b2 [11.4 kB] Get:100 http://mirror.einval.org/debian unstable/main arm64 libproc-processtable-perl arm64 0.636-1+b2 [41.6 kB] Get:101 http://mirror.einval.org/debian unstable/main arm64 libregexp-wildcards-perl all 1.05-3 [14.1 kB] Get:102 http://mirror.einval.org/debian unstable/main arm64 libsereal-decoder-perl arm64 5.004+ds-1+b2 [95.4 kB] Get:103 http://mirror.einval.org/debian unstable/main arm64 libsereal-encoder-perl arm64 5.004+ds-1+b2 [97.6 kB] Get:104 http://mirror.einval.org/debian unstable/main arm64 libsort-versions-perl all 1.62-3 [8928 B] Get:105 http://mirror.einval.org/debian unstable/main arm64 libxs-parse-keyword-perl arm64 0.42-1 [58.3 kB] Get:106 http://mirror.einval.org/debian unstable/main arm64 libsyntax-keyword-try-perl arm64 0.29-2 [26.6 kB] Get:107 http://mirror.einval.org/debian unstable/main arm64 libterm-readkey-perl arm64 2.38-2+b3 [24.4 kB] Get:108 http://mirror.einval.org/debian unstable/main arm64 libtext-levenshteinxs-perl arm64 0.03-5+b3 [8680 B] Get:109 http://mirror.einval.org/debian unstable/main arm64 libtext-markdown-discount-perl arm64 0.16-1+b2 [13.1 kB] Get:110 http://mirror.einval.org/debian unstable/main arm64 libtext-xslate-perl arm64 3.5.9-2 [171 kB] Get:111 http://mirror.einval.org/debian unstable/main arm64 libtime-duration-perl all 1.21-2 [13.1 kB] Get:112 http://mirror.einval.org/debian unstable/main arm64 libtime-moment-perl arm64 0.44-2+b3 [72.2 kB] Get:113 http://mirror.einval.org/debian unstable/main arm64 libunicode-utf8-perl arm64 0.62-2+b2 [19.9 kB] Get:114 http://mirror.einval.org/debian unstable/main arm64 libwww-mechanize-perl all 2.18-1 [114 kB] Get:115 http://mirror.einval.org/debian unstable/main arm64 libyaml-0-2 arm64 0.2.5-1+b1 [49.0 kB] Get:116 http://mirror.einval.org/debian unstable/main arm64 libyaml-libyaml-perl arm64 0.89+ds-1+b1 [33.2 kB] Get:117 http://mirror.einval.org/debian unstable/main arm64 plzip arm64 1.11-1 [58.8 kB] Get:118 http://mirror.einval.org/debian unstable/main arm64 lzop arm64 1.04-2 [82.8 kB] Get:119 http://mirror.einval.org/debian unstable/main arm64 patchutils arm64 0.4.2-1 [73.5 kB] Get:120 http://mirror.einval.org/debian unstable/main arm64 t1utils arm64 1.41-4 [59.8 kB] Get:121 http://mirror.einval.org/debian unstable/main arm64 unzip arm64 6.0-28 [157 kB] Get:122 http://mirror.einval.org/debian unstable/main arm64 lintian all 2.117.0 [1052 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 12.4 MB in 0s (50.9 MB/s) Selecting previously unselected package netbase. (Reading database ... 17359 files and directories currently installed.) Preparing to unpack .../000-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package readline-common. Preparing to unpack .../001-readline-common_8.2-4_all.deb ... Unpacking readline-common (8.2-4) ... Selecting previously unselected package openssl. Preparing to unpack .../002-openssl_3.2.1-3_arm64.deb ... Unpacking openssl (3.2.1-3) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../003-ca-certificates_20240203_all.deb ... Unpacking ca-certificates (20240203) ... Selecting previously unselected package diffstat. Preparing to unpack .../004-diffstat_1.66-1_arm64.deb ... Unpacking diffstat (1.66-1) ... Selecting previously unselected package libassuan0:arm64. Preparing to unpack .../005-libassuan0_2.5.6-1+b1_arm64.deb ... Unpacking libassuan0:arm64 (2.5.6-1+b1) ... Selecting previously unselected package libreadline8t64:arm64. Preparing to unpack .../006-libreadline8t64_8.2-4_arm64.deb ... Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:arm64 (8.2-4) ... Selecting previously unselected package gpgconf. Preparing to unpack .../007-gpgconf_2.2.43-6_arm64.deb ... Unpacking gpgconf (2.2.43-6) ... Selecting previously unselected package libsqlite3-0:arm64. Preparing to unpack .../008-libsqlite3-0_3.45.3-1_arm64.deb ... Unpacking libsqlite3-0:arm64 (3.45.3-1) ... 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Unpacking libdynaloader-functions-perl (0.003-3) ... Selecting previously unselected package libdevel-callchecker-perl:arm64. Preparing to unpack .../015-libdevel-callchecker-perl_0.009-1_arm64.deb ... Unpacking libdevel-callchecker-perl:arm64 (0.009-1) ... Selecting previously unselected package libparams-classify-perl:arm64. Preparing to unpack .../016-libparams-classify-perl_0.015-2+b3_arm64.deb ... Unpacking libparams-classify-perl:arm64 (0.015-2+b3) ... Selecting previously unselected package libmodule-runtime-perl. Preparing to unpack .../017-libmodule-runtime-perl_0.016-2_all.deb ... Unpacking libmodule-runtime-perl (0.016-2) ... Selecting previously unselected package libtry-tiny-perl. Preparing to unpack .../018-libtry-tiny-perl_0.31-2_all.deb ... Unpacking libtry-tiny-perl (0.31-2) ... Selecting previously unselected package libmodule-implementation-perl. Preparing to unpack .../019-libmodule-implementation-perl_0.09-2_all.deb ... 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Unpacking libcpanel-json-xs-perl:arm64 (4.37-1+b2) ... Selecting previously unselected package libdevel-stacktrace-perl. Preparing to unpack .../036-libdevel-stacktrace-perl_2.0500-1_all.deb ... Unpacking libdevel-stacktrace-perl (2.0500-1) ... Selecting previously unselected package libexception-class-perl. Preparing to unpack .../037-libexception-class-perl_1.45-1_all.deb ... Unpacking libexception-class-perl (1.45-1) ... Selecting previously unselected package libiterator-perl. Preparing to unpack .../038-libiterator-perl_0.03+ds1-2_all.deb ... Unpacking libiterator-perl (0.03+ds1-2) ... Selecting previously unselected package libiterator-util-perl. Preparing to unpack .../039-libiterator-util-perl_0.02+ds1-2_all.deb ... Unpacking libiterator-util-perl (0.02+ds1-2) ... Selecting previously unselected package libdata-dpath-perl. Preparing to unpack .../040-libdata-dpath-perl_0.59-1_all.deb ... Unpacking libdata-dpath-perl (0.59-1) ... 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Setting up plzip (1.11-1) ... update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip (lzip) in auto mode update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip-compressor (lzip-compressor) in auto mode update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip-decompressor (lzip-decompressor) in auto mode Setting up libunicode-utf8-perl (0.62-2+b2) ... Setting up libmouse-perl (2.5.10-1+b5) ... Setting up libdata-messagepack-perl (1.02-1+b3) ... Setting up libdynaloader-functions-perl (0.003-3) ... Setting up libclass-method-modifiers-perl (2.15-1) ... Setting up liblist-compare-perl (0.55-2) ... Setting up libclone-perl:arm64 (0.46-1+b2) ... Setting up libyaml-0-2:arm64 (0.2.5-1+b1) ... Setting up libsub-identify-perl (0.14-3+b2) ... Setting up libcpanel-json-xs-perl:arm64 (4.37-1+b2) ... Setting up libhtml-tagset-perl (3.24-1) ... Setting up libdevel-size-perl (0.84-1) ... Setting up unzip (6.0-28) ... Setting up libsqlite3-0:arm64 (3.45.3-1) ... Setting up liblwp-mediatypes-perl (6.04-2) ... Setting up libyaml-libyaml-perl (0.89+ds-1+b1) ... Setting up libio-interactive-perl (1.025-1) ... Setting up libtry-tiny-perl (0.31-2) ... Setting up perl-openssl-defaults:arm64 (7+b2) ... Setting up libmldbm-perl (2.05-4) ... Setting up liblzo2-2:arm64 (2.10-2+b1) ... Setting up libtime-moment-perl (0.44-2+b3) ... Setting up libencode-locale-perl (1.05-3) ... Setting up libassuan0:arm64 (2.5.6-1+b1) ... Setting up libconfig-tiny-perl (2.30-1) ... Setting up libsereal-encoder-perl (5.004+ds-1+b2) ... Setting up liblist-utilsby-perl (0.12-2) ... Setting up libnet-netmask-perl (2.0002-2) ... Setting up patchutils (0.4.2-1) ... Setting up libjson-maybexs-perl (1.004005-1) ... Setting up libnetaddr-ip-perl (4.079+dfsg-2+b3) ... Setting up libclass-data-inheritable-perl (0.08-3) ... Setting up libxs-parse-keyword-perl (0.42-1) ... Setting up libipc-system-simple-perl (1.30-2) ... 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Setting up libregexp-wildcards-perl (1.05-3) ... Setting up libaliased-perl (0.34-3) ... Setting up netbase (6.4) ... Setting up libstrictures-perl (2.000006-1) ... Setting up libsub-quote-perl (2.006008-1) ... Setting up libdevel-stacktrace-perl (2.0500-1) ... Setting up libclass-xsaccessor-perl (1.19-4+b3) ... Setting up libsort-versions-perl (1.62-3) ... Setting up libterm-readkey-perl (2.38-2+b3) ... Setting up libfont-ttf-perl (1.06-2) ... Setting up openssl (3.2.1-3) ... Setting up libtext-levenshteinxs-perl (0.03-5+b3) ... Setting up libperlio-gzip-perl (0.20-1+b3) ... Setting up readline-common (8.2-4) ... Setting up libhtml-html5-entities-perl (0.004-3) ... Setting up libsereal-decoder-perl (5.004+ds-1+b2) ... Setting up libmarkdown2:arm64 (2.2.7-2+b1) ... Setting up liburi-perl (5.28-1) ... Setting up iso-codes (4.16.0-1) ... Setting up libnet-ipv6addr-perl (1.02-1) ... Setting up libdata-validate-ip-perl (0.31-1) ... Setting up libemail-address-xs-perl (1.05-1+b3) ... Setting up libnet-ssleay-perl:arm64 (1.94-1+b1) ... Setting up libhttp-date-perl (6.06-1) ... Setting up libfile-basedir-perl (0.09-2) ... Setting up libfile-listing-perl (6.16-1) ... Setting up libnet-http-perl (6.23-1) ... Setting up libtext-markdown-discount-perl (0.16-1+b2) ... Setting up libexception-class-perl (1.45-1) ... Setting up libdevel-callchecker-perl:arm64 (0.009-1) ... Setting up ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 146 added, 0 removed; done. Setting up libdata-validate-uri-perl (0.07-3) ... Setting up libreadline8t64:arm64 (8.2-4) ... Setting up libwww-robotrules-perl (6.02-1) ... Setting up libhtml-parser-perl:arm64 (3.82-1) ... Setting up gpgconf (2.2.43-6) ... Setting up libio-socket-ssl-perl (2.085-1) ... Setting up gpg (2.2.43-6) ... Setting up libhttp-message-perl (6.45-1) ... Setting up libhtml-form-perl (6.11-1) ... Setting up libiterator-perl (0.03+ds1-2) ... Setting up libhttp-negotiate-perl (6.01-2) ... Setting up libiterator-util-perl (0.02+ds1-2) ... Setting up libhttp-cookies-perl (6.11-1) ... Setting up libhtml-tree-perl (5.07-3) ... Setting up libparams-classify-perl:arm64 (0.015-2+b3) ... Setting up libcgi-pm-perl (4.64-1) ... Setting up libmodule-runtime-perl (0.016-2) ... Setting up libdata-dpath-perl (0.59-1) ... Setting up libmodule-implementation-perl (0.09-2) ... Setting up libpackage-stash-perl (0.40-1) ... Setting up libimport-into-perl (1.002005-2) ... Setting up libmoo-perl (2.005005-1) ... Setting up liblist-someutils-perl (0.59-1) ... Setting up libmoox-aliases-perl (0.001006-2) ... Setting up libb-hooks-endofscope-perl (0.28-1) ... Setting up libnamespace-clean-perl (0.27-2) ... Setting up libwww-perl (6.77-1) ... Setting up libhtml-tokeparser-simple-perl (3.16-4) ... Setting up libwww-mechanize-perl (2.18-1) ... Setting up liblwp-protocol-https-perl (6.14-1) ... Setting up lintian (2.117.0) ... Setting up sbuild-build-depends-lintian-dummy:i386 (0.invalid.0) ... Processing triggers for libc-bin (2.38-11) ... Processing triggers for man-db (2.12.1-1) ... Not building database; man-db/auto-update is not 'true'. Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Running lintian... I: Lintian run was successful. +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: arm64 Build Profiles: cross nocheck Build Type: any Build-Space: 12196 Build-Time: 118 Distribution: unstable Foreign Architectures: i386 Host Architecture: i386 Install-Time: 47 Job: libpsortb_1.0+dfsg-6 Lintian: pass Machine Architecture: arm64 Package: libpsortb Package-Time: 203 Source-Version: 1.0+dfsg-6 Space: 12196 Status: successful Version: 1.0+dfsg-6 -------------------------------------------------------------------------------- Finished at 2024-05-24T05:10:53Z Build needed 00:03:23, 12196k disk space