sbuild (Debian sbuild) 0.78.1 (09 February 2019) on mjolnir +==============================================================================+ | libpwiz 3.0.18342-4 (i386) Thu, 01 Jul 2021 10:49:47 +0000 | +==============================================================================+ Package: libpwiz Version: 3.0.18342-4 Source Version: 3.0.18342-4 Distribution: unstable Machine Architecture: arm64 Host Architecture: i386 Build Architecture: arm64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/crossqa-sid-63331f1e-22bd-4a4a-ae83-39ef41fc8f77' with '<>' I: NOTICE: Log filtering will replace 'build/libpwiz-w0fcm0/resolver-NegEyB' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://mirror.einval.org/debian sid InRelease [161 kB] Ign:2 http://mirror.einval.org/debian sid/main Sources.diff/Index Ign:3 http://mirror.einval.org/debian sid/main arm64 Packages.diff/Index Get:2 http://mirror.einval.org/debian sid/main Sources.diff/Index [63.6 kB] Ign:2 http://mirror.einval.org/debian sid/main Sources.diff/Index Ign:3 http://mirror.einval.org/debian sid/main arm64 Packages.diff/Index Get:4 http://mirror.einval.org/debian sid/main i386 Packages [8567 kB] Get:5 http://mirror.einval.org/debian sid/main Sources [9150 kB] Get:6 http://mirror.einval.org/debian sid/main arm64 Packages [8513 kB] Fetched 26.4 MB in 7s (3810 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'libpwiz' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/debichem-team/libpwiz.git Please use: git clone https://salsa.debian.org/debichem-team/libpwiz.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 3220 kB of source archives. Get:1 http://mirror.einval.org/debian sid/main libpwiz 3.0.18342-4 (dsc) [2597 B] Get:2 http://mirror.einval.org/debian sid/main libpwiz 3.0.18342-4 (tar) [3197 kB] Get:3 http://mirror.einval.org/debian sid/main libpwiz 3.0.18342-4 (diff) [20.0 kB] Fetched 3220 kB in 0s (28.1 MB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/libpwiz-w0fcm0/libpwiz-3.0.18342' with '<>' I: NOTICE: Log filtering will replace 'build/libpwiz-w0fcm0' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 12), dpkg-dev (>= 1.16.1~), chrpath (>= 0.13), libboost-tools-dev, doxygen (>= 1.8.1.2), docbook-to-man, libboost-program-options-dev (>= 1.62.0), libboost-date-time-dev (>= 1.62.0), libboost-iostreams-dev (>= 1.62.0), libboost-regex-dev (>= 1.62.0), libboost-filesystem-dev (>= 1.62.0), libboost-thread-dev (>= 1.62.0), libboost-system-dev (>= 1.62.0), libboost-chrono-dev (>= 1.62.0), libboost-dev (>= 1.62.0), libfftw3-dev (>= 3.3.2), libgd-dev, libjs-jquery, libeigen3-dev, libc-dev, libstdc++-dev, build-essential:arm64, fakeroot:arm64, crossbuild-essential-i386:arm64, libc-dev:i386, libstdc++-dev:i386 Filtered Build-Depends: debhelper-compat (= 12), dpkg-dev (>= 1.16.1~), chrpath (>= 0.13), libboost-tools-dev, doxygen (>= 1.8.1.2), docbook-to-man, libboost-program-options-dev (>= 1.62.0), libboost-date-time-dev (>= 1.62.0), libboost-iostreams-dev (>= 1.62.0), libboost-regex-dev (>= 1.62.0), libboost-filesystem-dev (>= 1.62.0), libboost-thread-dev (>= 1.62.0), libboost-system-dev (>= 1.62.0), libboost-chrono-dev (>= 1.62.0), libboost-dev (>= 1.62.0), libfftw3-dev (>= 3.3.2), libgd-dev, libjs-jquery, libeigen3-dev, libc-dev, libstdc++-dev, build-essential:arm64, fakeroot:arm64, crossbuild-essential-i386:arm64, libc-dev:i386, libstdc++-dev:i386 dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [963 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [554 B] Get:5 copy:/<>/apt_archive ./ Packages [644 B] Fetched 2161 B in 0s (51.4 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-i686-linux-gnu bsdextrautils chrpath cpp-10-i686-linux-gnu cpp-i686-linux-gnu cross-config crossbuild-essential-i386 debhelper dh-autoreconf dh-strip-nondeterminism docbook docbook-to-man doxygen dpkg-cross dwz file fontconfig-config fonts-dejavu-core g++-10-i686-linux-gnu g++-i686-linux-gnu gcc-10-base:i386 gcc-10-cross-base gcc-10-i686-linux-gnu gcc-10-i686-linux-gnu-base gcc-i686-linux-gnu gettext gettext-base groff-base icu-devtools intltool-debian libarchive-zip-perl libasan6:i386 libasan6-i386-cross libatomic1:i386 libatomic1-i386-cross libboost-atomic1.74-dev:i386 libboost-atomic1.74.0:i386 libboost-chrono-dev:i386 libboost-chrono1.74-dev:i386 libboost-chrono1.74.0:i386 libboost-date-time-dev:i386 libboost-date-time1.74-dev:i386 libboost-date-time1.74.0:i386 libboost-dev:i386 libboost-filesystem-dev:i386 libboost-filesystem1.74-dev:i386 libboost-filesystem1.74.0:i386 libboost-iostreams-dev:i386 libboost-iostreams1.74-dev:i386 libboost-iostreams1.74.0:i386 libboost-program-options-dev:i386 libboost-program-options1.74-dev:i386 libboost-program-options1.74.0:i386 libboost-regex-dev:i386 libboost-regex1.74-dev:i386 libboost-regex1.74.0:i386 libboost-serialization1.74-dev:i386 libboost-serialization1.74.0:i386 libboost-system-dev:i386 libboost-system1.74-dev:i386 libboost-system1.74.0:i386 libboost-thread-dev:i386 libboost-thread1.74-dev:i386 libboost-thread1.74.0:i386 libboost-tools-dev libboost1.74-dev:i386 libboost1.74-tools-dev libbrotli-dev:i386 libbrotli1:i386 libbsd0 libbsd0:i386 libbz2-1.0:i386 libc6:i386 libc6-dev:i386 libc6-dev-i386-cross libc6-i386-cross libclang-cpp11 libclang1-11 libcom-err2:i386 libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev:i386 libcrypt1:i386 libdebhelper-perl libdebian-dpkgcross-perl libdeflate-dev:i386 libdeflate0:i386 libedit2 libeigen3-dev libelf1 libexpat1:i386 libexpat1-dev:i386 libfftw3-bin libfftw3-dev:i386 libfftw3-double3 libfftw3-double3:i386 libfftw3-long3 libfftw3-long3:i386 libfftw3-quad3:i386 libfftw3-single3 libfftw3-single3:i386 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libfontconfig-dev:i386 libfontconfig1:i386 libfreetype-dev:i386 libfreetype6:i386 libfreetype6-dev:i386 libgcc-10-dev:i386 libgcc-10-dev-i386-cross libgcc-s1:i386 libgcc-s1-i386-cross libgd-dev:i386 libgd3:i386 libglib2.0-0 libgomp1:i386 libgomp1-i386-cross libgssapi-krb5-2:i386 libice-dev:i386 libice6:i386 libicu-dev:i386 libicu67 libicu67:i386 libio-string-perl libitm1:i386 libitm1-i386-cross libjbig-dev:i386 libjbig0:i386 libjpeg-dev:i386 libjpeg62-turbo:i386 libjpeg62-turbo-dev:i386 libjs-jquery libk5crypto3:i386 libkeyutils1:i386 libkrb5-3:i386 libkrb5support0:i386 libllvm11 liblocale-gettext-perl liblzma-dev:i386 liblzma5:i386 libmagic-mgc libmagic1 libmd0 libmd0:i386 libnsl-dev:i386 libnsl2:i386 libosp5 libpipeline1 libpng-dev:i386 libpng16-16:i386 libpthread-stubs0-dev:i386 libquadmath0:i386 libquadmath0-i386-cross libsigsegv2 libsm-dev:i386 libsm6:i386 libssl1.1:i386 libstdc++-10-dev:i386 libstdc++-10-dev-i386-cross libstdc++6:i386 libstdc++6-i386-cross libsub-override-perl libtiff-dev:i386 libtiff5:i386 libtiffxx5:i386 libtirpc-dev:i386 libtirpc3:i386 libtool libubsan1:i386 libubsan1-i386-cross libuchardet0 libuuid1:i386 libvpx-dev:i386 libvpx6:i386 libwebp6:i386 libx11-6:i386 libx11-data libx11-dev:i386 libxapian30 libxau-dev:i386 libxau6:i386 libxcb1:i386 libxcb1-dev:i386 libxdmcp-dev:i386 libxdmcp6:i386 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libxpm-dev:i386 libxpm4:i386 libxt-dev:i386 libxt6:i386 libyaml-perl libz3-4 libzstd1:i386 linux-libc-dev:i386 linux-libc-dev-i386-cross m4 man-db opensp pkg-config po-debconf sensible-utils sgml-base sgml-data ucf uuid-dev:i386 x11-common x11proto-dev xml-core xorg-sgml-doctools xtrans-dev zlib1g:i386 zlib1g-dev:i386 Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc gcc-10-locales cpp-doc dh-make docbook-defguide docbook-dsssl docbook-xml psgml doxygen-latex doxygen-doc doxygen-gui graphviz binutils-multiarch g++-10-multilib-i686-linux-gnu gcc-10-doc gcc-10-multilib-i686-linux-gnu manpages-dev flex bison gdb-i686-linux-gnu gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff libboost-doc:i386 libboost1.74-doc:i386 libboost-container1.74-dev:i386 libboost-context1.74-dev:i386 libboost-contract1.74-dev:i386 libboost-coroutine1.74-dev:i386 libboost-exception1.74-dev:i386 libboost-fiber1.74-dev:i386 libboost-graph1.74-dev:i386 libboost-graph-parallel1.74-dev:i386 libboost-locale1.74-dev:i386 libboost-log1.74-dev:i386 libboost-math1.74-dev:i386 libboost-mpi1.74-dev:i386 libboost-mpi-python1.74-dev:i386 libboost-numpy1.74-dev:i386 libboost-python1.74-dev:i386 libboost-random1.74-dev:i386 libboost-stacktrace1.74-dev:i386 libboost-test1.74-dev:i386 libboost-timer1.74-dev:i386 libboost-type-erasure1.74-dev:i386 libboost-wave1.74-dev:i386 libmpfrc++-dev:i386 libntl-dev:i386 libboost-nowide1.74-dev:i386 xsltproc docbook-xsl default-jdk fop glibc-doc:i386 libc-l10n:i386 locales:i386 manpages-dev:i386 libeigen3-doc libmpfrc++-dev libfftw3-doc:i386 libfftw3-dev freetype2-doc:i386 libgd-tools:i386 krb5-doc:i386 krb5-user:i386 libice-doc:i386 icu-doc:i386 liblzma-doc:i386 libsm-doc:i386 libstdc++-10-doc:i386 libtool-doc gfortran | fortran95-compiler gcj-jdk libx11-doc:i386 xapian-tools libxcb-doc:i386 libxt-doc:i386 libyaml-shell-perl m4-doc apparmor less www-browser doc-base libmail-box-perl sgml-base-doc perlsgml w3-recs libxml2-utils Recommended packages: curl | wget | lynx libidn2-0:i386 libnss-nis:i386 libnss-nisplus:i386 libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs javascript-common krb5-locales:i386 libpng-tools:i386 libltdl-dev uuid-runtime:i386 libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-i686-linux-gnu bsdextrautils chrpath cpp-10-i686-linux-gnu cpp-i686-linux-gnu cross-config crossbuild-essential-i386 debhelper dh-autoreconf dh-strip-nondeterminism docbook docbook-to-man doxygen dpkg-cross dwz file fontconfig-config fonts-dejavu-core g++-10-i686-linux-gnu g++-i686-linux-gnu gcc-10-base:i386 gcc-10-cross-base gcc-10-i686-linux-gnu gcc-10-i686-linux-gnu-base gcc-i686-linux-gnu gettext gettext-base groff-base icu-devtools intltool-debian libarchive-zip-perl libasan6:i386 libasan6-i386-cross libatomic1:i386 libatomic1-i386-cross libboost-atomic1.74-dev:i386 libboost-atomic1.74.0:i386 libboost-chrono-dev:i386 libboost-chrono1.74-dev:i386 libboost-chrono1.74.0:i386 libboost-date-time-dev:i386 libboost-date-time1.74-dev:i386 libboost-date-time1.74.0:i386 libboost-dev:i386 libboost-filesystem-dev:i386 libboost-filesystem1.74-dev:i386 libboost-filesystem1.74.0:i386 libboost-iostreams-dev:i386 libboost-iostreams1.74-dev:i386 libboost-iostreams1.74.0:i386 libboost-program-options-dev:i386 libboost-program-options1.74-dev:i386 libboost-program-options1.74.0:i386 libboost-regex-dev:i386 libboost-regex1.74-dev:i386 libboost-regex1.74.0:i386 libboost-serialization1.74-dev:i386 libboost-serialization1.74.0:i386 libboost-system-dev:i386 libboost-system1.74-dev:i386 libboost-system1.74.0:i386 libboost-thread-dev:i386 libboost-thread1.74-dev:i386 libboost-thread1.74.0:i386 libboost-tools-dev libboost1.74-dev:i386 libboost1.74-tools-dev libbrotli-dev:i386 libbrotli1:i386 libbsd0 libbsd0:i386 libbz2-1.0:i386 libc6:i386 libc6-dev:i386 libc6-dev-i386-cross libc6-i386-cross libclang-cpp11 libclang1-11 libcom-err2:i386 libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev:i386 libcrypt1:i386 libdebhelper-perl libdebian-dpkgcross-perl libdeflate-dev:i386 libdeflate0:i386 libedit2 libeigen3-dev libelf1 libexpat1:i386 libexpat1-dev:i386 libfftw3-bin libfftw3-dev:i386 libfftw3-double3 libfftw3-double3:i386 libfftw3-long3 libfftw3-long3:i386 libfftw3-quad3:i386 libfftw3-single3 libfftw3-single3:i386 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libfontconfig-dev:i386 libfontconfig1:i386 libfreetype-dev:i386 libfreetype6:i386 libfreetype6-dev:i386 libgcc-10-dev:i386 libgcc-10-dev-i386-cross libgcc-s1:i386 libgcc-s1-i386-cross libgd-dev:i386 libgd3:i386 libglib2.0-0 libgomp1:i386 libgomp1-i386-cross libgssapi-krb5-2:i386 libice-dev:i386 libice6:i386 libicu-dev:i386 libicu67 libicu67:i386 libio-string-perl libitm1:i386 libitm1-i386-cross libjbig-dev:i386 libjbig0:i386 libjpeg-dev:i386 libjpeg62-turbo:i386 libjpeg62-turbo-dev:i386 libjs-jquery libk5crypto3:i386 libkeyutils1:i386 libkrb5-3:i386 libkrb5support0:i386 libllvm11 liblocale-gettext-perl liblzma-dev:i386 liblzma5:i386 libmagic-mgc libmagic1 libmd0 libmd0:i386 libnsl-dev:i386 libnsl2:i386 libosp5 libpipeline1 libpng-dev:i386 libpng16-16:i386 libpthread-stubs0-dev:i386 libquadmath0:i386 libquadmath0-i386-cross libsigsegv2 libsm-dev:i386 libsm6:i386 libssl1.1:i386 libstdc++-10-dev:i386 libstdc++-10-dev-i386-cross libstdc++6:i386 libstdc++6-i386-cross libsub-override-perl libtiff-dev:i386 libtiff5:i386 libtiffxx5:i386 libtirpc-dev:i386 libtirpc3:i386 libtool libubsan1:i386 libubsan1-i386-cross libuchardet0 libuuid1:i386 libvpx-dev:i386 libvpx6:i386 libwebp6:i386 libx11-6:i386 libx11-data libx11-dev:i386 libxapian30 libxau-dev:i386 libxau6:i386 libxcb1:i386 libxcb1-dev:i386 libxdmcp-dev:i386 libxdmcp6:i386 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libxpm-dev:i386 libxpm4:i386 libxt-dev:i386 libxt6:i386 libyaml-perl libz3-4 libzstd1:i386 linux-libc-dev:i386 linux-libc-dev-i386-cross m4 man-db opensp pkg-config po-debconf sbuild-build-depends-main-dummy:i386 sensible-utils sgml-base sgml-data ucf uuid-dev:i386 x11-common x11proto-dev xml-core xorg-sgml-doctools xtrans-dev zlib1g:i386 zlib1g-dev:i386 0 upgraded, 223 newly installed, 0 to remove and 0 not upgraded. Need to get 302 MB of archives. After this operation, 1457 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [1072 B] Get:2 http://mirror.einval.org/debian sid/main arm64 bsdextrautils arm64 2.36.1-7 [141 kB] Get:3 http://mirror.einval.org/debian sid/main arm64 libuchardet0 arm64 0.0.7-1 [67.9 kB] Get:4 http://mirror.einval.org/debian sid/main arm64 groff-base arm64 1.22.4-6 [883 kB] Get:5 http://mirror.einval.org/debian sid/main arm64 libpipeline1 arm64 1.5.3-1 [33.0 kB] Get:6 http://mirror.einval.org/debian sid/main arm64 man-db arm64 2.9.4-2 [1336 kB] Get:7 http://mirror.einval.org/debian sid/main arm64 liblocale-gettext-perl arm64 1.07-4+b1 [18.9 kB] Get:8 http://mirror.einval.org/debian sid/main arm64 sgml-base all 1.30 [15.1 kB] Get:9 http://mirror.einval.org/debian sid/main i386 gcc-10-base i386 10.2.1-6 [201 kB] Get:10 http://mirror.einval.org/debian sid/main arm64 sensible-utils all 0.0.14 [14.8 kB] Get:11 http://mirror.einval.org/debian sid/main arm64 libmagic-mgc arm64 1:5.39-3 [273 kB] Get:12 http://mirror.einval.org/debian sid/main arm64 libmagic1 arm64 1:5.39-3 [121 kB] Get:13 http://mirror.einval.org/debian sid/main arm64 file arm64 1:5.39-3 [69.1 kB] Get:14 http://mirror.einval.org/debian sid/main arm64 gettext-base arm64 0.21-4 [173 kB] Get:15 http://mirror.einval.org/debian sid/main arm64 ucf all 3.0043 [74.0 kB] Get:16 http://mirror.einval.org/debian sid/main arm64 libsigsegv2 arm64 2.13-1 [34.7 kB] Get:17 http://mirror.einval.org/debian sid/main arm64 m4 arm64 1.4.18-5 [199 kB] Get:18 http://mirror.einval.org/debian sid/main arm64 autoconf all 2.69-14 [313 kB] Get:19 http://mirror.einval.org/debian sid/main arm64 autotools-dev all 20180224.1+nmu1 [77.1 kB] Get:20 http://mirror.einval.org/debian sid/main arm64 automake all 1:1.16.3-2 [814 kB] Get:21 http://mirror.einval.org/debian sid/main arm64 autopoint all 0.21-4 [510 kB] Get:22 http://mirror.einval.org/debian sid/main arm64 chrpath arm64 0.16-2+b1 [16.0 kB] Get:23 http://mirror.einval.org/debian sid/main arm64 gcc-10-i686-linux-gnu-base arm64 10.2.1-6cross1 [202 kB] Get:24 http://mirror.einval.org/debian sid/main arm64 cpp-10-i686-linux-gnu arm64 10.2.1-6cross1 [46.1 MB] Get:25 http://mirror.einval.org/debian sid/main arm64 cpp-i686-linux-gnu arm64 4:10.2.1-1 [16.8 kB] Get:26 http://mirror.einval.org/debian sid/main arm64 cross-config all 2.6.18+nmu1 [31.5 kB] Get:27 http://mirror.einval.org/debian sid/main arm64 binutils-i686-linux-gnu arm64 2.35.2-2 [1967 kB] Get:28 http://mirror.einval.org/debian sid/main arm64 gcc-10-cross-base all 10.2.1-6cross1 [197 kB] Get:29 http://mirror.einval.org/debian sid/main arm64 libc6-i386-cross all 2.31-9cross4 [1502 kB] Get:30 http://mirror.einval.org/debian sid/main arm64 libgcc-s1-i386-cross all 10.2.1-6cross1 [49.7 kB] Get:31 http://mirror.einval.org/debian sid/main arm64 libgomp1-i386-cross all 10.2.1-6cross1 [104 kB] Get:32 http://mirror.einval.org/debian sid/main arm64 libitm1-i386-cross all 10.2.1-6cross1 [28.3 kB] Get:33 http://mirror.einval.org/debian sid/main arm64 libatomic1-i386-cross all 10.2.1-6cross1 [9376 B] Get:34 http://mirror.einval.org/debian sid/main arm64 libasan6-i386-cross all 10.2.1-6cross1 [1923 kB] Get:35 http://mirror.einval.org/debian sid/main arm64 libstdc++6-i386-cross all 10.2.1-6cross1 [487 kB] Get:36 http://mirror.einval.org/debian sid/main arm64 libubsan1-i386-cross all 10.2.1-6cross1 [751 kB] Get:37 http://mirror.einval.org/debian sid/main arm64 libquadmath0-i386-cross all 10.2.1-6cross1 [228 kB] Get:38 http://mirror.einval.org/debian sid/main arm64 libgcc-10-dev-i386-cross all 10.2.1-6cross1 [2323 kB] Get:39 http://mirror.einval.org/debian sid/main arm64 gcc-10-i686-linux-gnu arm64 10.2.1-6cross1 [52.2 MB] Get:40 http://mirror.einval.org/debian sid/main arm64 gcc-i686-linux-gnu arm64 4:10.2.1-1 [1452 B] Get:41 http://mirror.einval.org/debian sid/main arm64 linux-libc-dev-i386-cross all 5.10.13-1cross4 [1396 kB] Get:42 http://mirror.einval.org/debian sid/main arm64 libc6-dev-i386-cross all 2.31-9cross4 [2224 kB] Get:43 http://mirror.einval.org/debian sid/main arm64 libstdc++-10-dev-i386-cross all 10.2.1-6cross1 [1775 kB] Get:44 http://mirror.einval.org/debian sid/main arm64 g++-10-i686-linux-gnu arm64 10.2.1-6cross1 [49.2 MB] Get:45 http://mirror.einval.org/debian sid/main arm64 g++-i686-linux-gnu arm64 4:10.2.1-1 [1176 B] Get:46 http://mirror.einval.org/debian sid/main arm64 libconfig-inifiles-perl all 3.000003-1 [52.1 kB] Get:47 http://mirror.einval.org/debian sid/main arm64 libio-string-perl all 1.08-3.1 [11.8 kB] Get:48 http://mirror.einval.org/debian sid/main arm64 libicu67 arm64 67.1-7 [8467 kB] Get:49 http://mirror.einval.org/debian sid/main arm64 libxml2 arm64 2.9.10+dfsg-6.7 [629 kB] Get:50 http://mirror.einval.org/debian sid/main arm64 libxml-namespacesupport-perl all 1.12-1.1 [14.9 kB] Get:51 http://mirror.einval.org/debian sid/main arm64 libxml-sax-base-perl all 1.09-1.1 [20.7 kB] Get:52 http://mirror.einval.org/debian sid/main arm64 libxml-sax-perl all 1.02+dfsg-1 [59.0 kB] Get:53 http://mirror.einval.org/debian sid/main arm64 libxml-libxml-perl arm64 2.0134+dfsg-2+b1 [326 kB] Get:54 http://mirror.einval.org/debian sid/main arm64 libxml-simple-perl all 2.25-1 [72.0 kB] Get:55 http://mirror.einval.org/debian sid/main arm64 libyaml-perl all 1.30-1 [67.7 kB] Get:56 http://mirror.einval.org/debian sid/main arm64 libconfig-auto-perl all 0.44-1.1 [19.0 kB] Get:57 http://mirror.einval.org/debian sid/main arm64 libfile-which-perl all 1.23-1 [16.6 kB] Get:58 http://mirror.einval.org/debian sid/main arm64 libfile-homedir-perl all 1.006-1 [43.8 kB] Get:59 http://mirror.einval.org/debian sid/main arm64 libdebian-dpkgcross-perl all 2.6.18+nmu1 [30.5 kB] Get:60 http://mirror.einval.org/debian sid/main arm64 dpkg-cross all 2.6.18+nmu1 [41.6 kB] Get:61 http://mirror.einval.org/debian sid/main arm64 crossbuild-essential-i386 all 12.9 [6704 B] Get:62 http://mirror.einval.org/debian sid/main arm64 libdebhelper-perl all 13.3.4 [189 kB] Get:63 http://mirror.einval.org/debian sid/main arm64 libtool all 2.4.6-15 [513 kB] Get:64 http://mirror.einval.org/debian sid/main arm64 dh-autoreconf all 20 [17.1 kB] Get:65 http://mirror.einval.org/debian sid/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get:66 http://mirror.einval.org/debian sid/main arm64 libsub-override-perl all 0.09-2 [10.2 kB] Get:67 http://mirror.einval.org/debian sid/main arm64 libfile-stripnondeterminism-perl all 1.12.0-1 [26.3 kB] Get:68 http://mirror.einval.org/debian sid/main arm64 dh-strip-nondeterminism all 1.12.0-1 [15.4 kB] Get:69 http://mirror.einval.org/debian sid/main arm64 libelf1 arm64 0.183-3 [164 kB] Get:70 http://mirror.einval.org/debian sid/main arm64 dwz arm64 0.14-1 [90.0 kB] Get:71 http://mirror.einval.org/debian sid/main arm64 gettext arm64 0.21-4 [1261 kB] Get:72 http://mirror.einval.org/debian sid/main arm64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get:73 http://mirror.einval.org/debian sid/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get:74 http://mirror.einval.org/debian sid/main arm64 debhelper all 13.3.4 [1049 kB] Get:75 http://mirror.einval.org/debian sid/main arm64 xml-core all 0.18+nmu1 [23.8 kB] Get:76 http://mirror.einval.org/debian sid/main arm64 sgml-data all 2.0.11+nmu1 [179 kB] Get:77 http://mirror.einval.org/debian sid/main arm64 docbook all 4.5-6 [129 kB] Get:78 http://mirror.einval.org/debian sid/main arm64 libosp5 arm64 1.5.2-13+b2 [884 kB] Get:79 http://mirror.einval.org/debian sid/main arm64 opensp arm64 1.5.2-13+b2 [414 kB] Get:80 http://mirror.einval.org/debian sid/main arm64 docbook-to-man arm64 1:2.0.0-45 [75.6 kB] Get:81 http://mirror.einval.org/debian sid/main arm64 libmd0 arm64 1.0.3-3 [27.9 kB] Get:82 http://mirror.einval.org/debian sid/main arm64 libbsd0 arm64 0.11.3-1 [106 kB] Get:83 http://mirror.einval.org/debian sid/main arm64 libedit2 arm64 3.1-20191231-2+b1 [92.1 kB] Get:84 http://mirror.einval.org/debian sid/main arm64 libz3-4 arm64 4.8.10-1 [6117 kB] Get:85 http://mirror.einval.org/debian sid/main arm64 libllvm11 arm64 1:11.0.1-2 [14.7 MB] Get:86 http://mirror.einval.org/debian sid/main arm64 libclang-cpp11 arm64 1:11.0.1-2 [7957 kB] Get:87 http://mirror.einval.org/debian sid/main arm64 libclang1-11 arm64 1:11.0.1-2 [4553 kB] Get:88 http://mirror.einval.org/debian sid/main arm64 libxapian30 arm64 1.4.18-3 [1013 kB] Get:89 http://mirror.einval.org/debian sid/main arm64 doxygen arm64 1.9.1-2 [3892 kB] Get:90 http://mirror.einval.org/debian sid/main arm64 fonts-dejavu-core all 2.37-2 [1069 kB] Get:91 http://mirror.einval.org/debian sid/main arm64 fontconfig-config all 2.13.1-4.2 [281 kB] Get:92 http://mirror.einval.org/debian sid/main arm64 icu-devtools arm64 67.1-7 [189 kB] Get:93 http://mirror.einval.org/debian sid/main i386 libgcc-s1 i386 10.2.1-6 [49.6 kB] Get:94 http://mirror.einval.org/debian sid/main i386 libcrypt1 i386 1:4.4.18-4 [97.2 kB] Get:95 http://mirror.einval.org/debian sid/main i386 libc6 i386 2.31-12 [2756 kB] Get:96 http://mirror.einval.org/debian sid/main i386 libasan6 i386 10.2.1-6 [1930 kB] Get:97 http://mirror.einval.org/debian sid/main i386 libatomic1 i386 10.2.1-6 [9508 B] Get:98 http://mirror.einval.org/debian sid/main i386 libgomp1 i386 10.2.1-6 [106 kB] Get:99 http://mirror.einval.org/debian sid/main i386 libitm1 i386 10.2.1-6 [28.6 kB] Get:100 http://mirror.einval.org/debian sid/main i386 libstdc++6 i386 10.2.1-6 [527 kB] Get:101 http://mirror.einval.org/debian sid/main i386 libubsan1 i386 10.2.1-6 [752 kB] Get:102 http://mirror.einval.org/debian sid/main i386 libquadmath0 i386 10.2.1-6 [228 kB] Get:103 http://mirror.einval.org/debian sid/main i386 libgcc-10-dev i386 10.2.1-6 [2324 kB] Get:104 http://mirror.einval.org/debian sid/main i386 linux-libc-dev i386 5.10.46-1 [1361 kB] Get:105 http://mirror.einval.org/debian sid/main i386 libcrypt-dev i386 1:4.4.18-4 [116 kB] Get:106 http://mirror.einval.org/debian sid/main i386 libcom-err2 i386 1.46.2-2 [74.6 kB] Get:107 http://mirror.einval.org/debian sid/main i386 libkrb5support0 i386 1.18.3-5 [68.4 kB] Get:108 http://mirror.einval.org/debian sid/main i386 libk5crypto3 i386 1.18.3-5 [117 kB] Get:109 http://mirror.einval.org/debian sid/main i386 libkeyutils1 i386 1.6.1-2 [15.9 kB] Get:110 http://mirror.einval.org/debian sid/main i386 libssl1.1 i386 1.1.1k-1 [1550 kB] Get:111 http://mirror.einval.org/debian sid/main i386 libkrb5-3 i386 1.18.3-5 [390 kB] Get:112 http://mirror.einval.org/debian sid/main i386 libgssapi-krb5-2 i386 1.18.3-5 [176 kB] Get:113 http://mirror.einval.org/debian sid/main i386 libtirpc3 i386 1.3.1-1 [90.8 kB] Get:114 http://mirror.einval.org/debian sid/main i386 libnsl2 i386 1.3.0-2 [42.2 kB] Get:115 http://mirror.einval.org/debian sid/main i386 libtirpc-dev i386 1.3.1-1 [201 kB] Get:116 http://mirror.einval.org/debian sid/main i386 libnsl-dev i386 1.3.0-2 [70.6 kB] Get:117 http://mirror.einval.org/debian sid/main i386 libc6-dev i386 2.31-12 [3776 kB] Get:118 http://mirror.einval.org/debian sid/main i386 libstdc++-10-dev i386 10.2.1-6 [1786 kB] Get:119 http://mirror.einval.org/debian sid/main i386 libboost1.74-dev i386 1.74.0-9 [9534 kB] Get:120 http://mirror.einval.org/debian sid/main i386 libboost-atomic1.74.0 i386 1.74.0-9 [244 kB] Get:121 http://mirror.einval.org/debian sid/main i386 libboost-atomic1.74-dev i386 1.74.0-9 [245 kB] Get:122 http://mirror.einval.org/debian sid/main i386 libboost-chrono1.74.0 i386 1.74.0-9 [254 kB] Get:123 http://mirror.einval.org/debian sid/main i386 libboost-chrono1.74-dev i386 1.74.0-9 [262 kB] Get:124 http://mirror.einval.org/debian sid/main i386 libboost-chrono-dev i386 1.74.0.3 [4956 B] Get:125 http://mirror.einval.org/debian sid/main i386 libboost-date-time1.74.0 i386 1.74.0-9 [241 kB] Get:126 http://mirror.einval.org/debian sid/main i386 libboost-serialization1.74.0 i386 1.74.0-9 [346 kB] Get:127 http://mirror.einval.org/debian sid/main i386 libboost-serialization1.74-dev i386 1.74.0-9 [390 kB] Get:128 http://mirror.einval.org/debian sid/main i386 libboost-date-time1.74-dev i386 1.74.0-9 [250 kB] Get:129 http://mirror.einval.org/debian sid/main i386 libboost-date-time-dev i386 1.74.0.3 [4332 B] Get:130 http://mirror.einval.org/debian sid/main i386 libboost-dev i386 1.74.0.3 [4548 B] Get:131 http://mirror.einval.org/debian sid/main i386 libboost-filesystem1.74.0 i386 1.74.0-9 [288 kB] Get:132 http://mirror.einval.org/debian sid/main i386 libboost-system1.74.0 i386 1.74.0-9 [241 kB] Get:133 http://mirror.einval.org/debian sid/main i386 libboost-system1.74-dev i386 1.74.0-9 [243 kB] Get:134 http://mirror.einval.org/debian sid/main i386 libboost-filesystem1.74-dev i386 1.74.0-9 [311 kB] Get:135 http://mirror.einval.org/debian sid/main i386 libboost-filesystem-dev i386 1.74.0.3 [4368 B] Get:136 http://mirror.einval.org/debian sid/main i386 libicu67 i386 67.1-7 [8775 kB] Get:137 http://mirror.einval.org/debian sid/main i386 libboost-regex1.74.0 i386 1.74.0-9 [542 kB] Get:138 http://mirror.einval.org/debian sid/main i386 libicu-dev i386 67.1-7 [9801 kB] Get:139 http://mirror.einval.org/debian sid/main i386 libboost-regex1.74-dev i386 1.74.0-9 [618 kB] Get:140 http://mirror.einval.org/debian sid/main i386 libbz2-1.0 i386 1.0.8-4 [46.5 kB] Get:141 http://mirror.einval.org/debian sid/main i386 liblzma5 i386 5.2.5-2 [176 kB] Get:142 http://mirror.einval.org/debian sid/main i386 libzstd1 i386 1.4.8+dfsg-2.1 [308 kB] Get:143 http://mirror.einval.org/debian sid/main i386 zlib1g i386 1:1.2.11.dfsg-2 [93.1 kB] Get:144 http://mirror.einval.org/debian sid/main i386 libboost-iostreams1.74.0 i386 1.74.0-9 [266 kB] Get:145 http://mirror.einval.org/debian sid/main i386 libboost-iostreams1.74-dev i386 1.74.0-9 [275 kB] Get:146 http://mirror.einval.org/debian sid/main i386 libboost-iostreams-dev i386 1.74.0.3 [4320 B] Get:147 http://mirror.einval.org/debian sid/main i386 libboost-program-options1.74.0 i386 1.74.0-9 [365 kB] Get:148 http://mirror.einval.org/debian sid/main i386 libboost-program-options1.74-dev i386 1.74.0-9 [397 kB] Get:149 http://mirror.einval.org/debian sid/main i386 libboost-program-options-dev i386 1.74.0.3 [4344 B] Get:150 http://mirror.einval.org/debian sid/main i386 libboost-regex-dev i386 1.74.0.3 [4596 B] Get:151 http://mirror.einval.org/debian sid/main i386 libboost-system-dev i386 1.74.0.3 [4472 B] Get:152 http://mirror.einval.org/debian sid/main i386 libboost-thread1.74.0 i386 1.74.0-9 [282 kB] Get:153 http://mirror.einval.org/debian sid/main i386 libboost-thread1.74-dev i386 1.74.0-9 [294 kB] Get:154 http://mirror.einval.org/debian sid/main i386 libboost-thread-dev i386 1.74.0.3 [4356 B] Get:155 http://mirror.einval.org/debian sid/main arm64 libboost1.74-tools-dev arm64 1.74.0-9 [1362 kB] Get:156 http://mirror.einval.org/debian sid/main arm64 libboost-tools-dev arm64 1.74.0.3 [4508 B] Get:157 http://mirror.einval.org/debian sid/main i386 libbrotli1 i386 1.0.9-2+b2 [286 kB] Get:158 http://mirror.einval.org/debian sid/main i386 libbrotli-dev i386 1.0.9-2+b2 [287 kB] Get:159 http://mirror.einval.org/debian sid/main i386 libmd0 i386 1.0.3-3 [28.9 kB] Get:160 http://mirror.einval.org/debian sid/main i386 libbsd0 i386 0.11.3-1 [111 kB] Get:161 http://mirror.einval.org/debian sid/main i386 libdeflate0 i386 1.7-1 [48.4 kB] Get:162 http://mirror.einval.org/debian sid/main i386 libdeflate-dev i386 1.7-1 [44.4 kB] Get:163 http://mirror.einval.org/debian sid/main arm64 libglib2.0-0 arm64 2.66.8-1 [1286 kB] Get:164 http://mirror.einval.org/debian sid/main arm64 pkg-config arm64 0.29.2-1 [63.6 kB] Get:165 http://mirror.einval.org/debian sid/main arm64 libeigen3-dev all 3.3.9-2 [858 kB] Get:166 http://mirror.einval.org/debian sid/main i386 libexpat1 i386 2.2.10-2 [98.8 kB] Get:167 http://mirror.einval.org/debian sid/main i386 libexpat1-dev i386 2.2.10-2 [147 kB] Get:168 http://mirror.einval.org/debian sid/main arm64 libfftw3-double3 arm64 3.3.8-2 [385 kB] Get:169 http://mirror.einval.org/debian sid/main arm64 libfftw3-long3 arm64 3.3.8-2 [526 kB] Get:170 http://mirror.einval.org/debian sid/main arm64 libfftw3-single3 arm64 3.3.8-2 [630 kB] Get:171 http://mirror.einval.org/debian sid/main arm64 libfftw3-bin arm64 3.3.8-2 [47.4 kB] Get:172 http://mirror.einval.org/debian sid/main i386 libfftw3-double3 i386 3.3.8-2 [640 kB] Get:173 http://mirror.einval.org/debian sid/main i386 libfftw3-long3 i386 3.3.8-2 [326 kB] Get:174 http://mirror.einval.org/debian sid/main i386 libfftw3-quad3 i386 3.3.8-2 [1762 kB] Get:175 http://mirror.einval.org/debian sid/main i386 libfftw3-single3 i386 3.3.8-2 [652 kB] Get:176 http://mirror.einval.org/debian sid/main i386 libfftw3-dev i386 3.3.8-2 [3170 kB] Get:177 http://mirror.einval.org/debian sid/main i386 libpng16-16 i386 1.6.37-3 [303 kB] Get:178 http://mirror.einval.org/debian sid/main i386 libfreetype6 i386 2.10.4+dfsg-1 [429 kB] Get:179 http://mirror.einval.org/debian sid/main i386 libuuid1 i386 2.36.1-7 [84.4 kB] Get:180 http://mirror.einval.org/debian sid/main i386 libfontconfig1 i386 2.13.1-4.2 [358 kB] Get:181 http://mirror.einval.org/debian sid/main i386 zlib1g-dev i386 1:1.2.11.dfsg-2 [194 kB] Get:182 http://mirror.einval.org/debian sid/main i386 libpng-dev i386 1.6.37-3 [307 kB] Get:183 http://mirror.einval.org/debian sid/main i386 libfreetype-dev i386 2.10.4+dfsg-1 [588 kB] Get:184 http://mirror.einval.org/debian sid/main i386 libfreetype6-dev i386 2.10.4+dfsg-1 [82.4 kB] Get:185 http://mirror.einval.org/debian sid/main i386 uuid-dev i386 2.36.1-7 [99.2 kB] Get:186 http://mirror.einval.org/debian sid/main i386 libfontconfig-dev i386 2.13.1-4.2 [383 kB] Get:187 http://mirror.einval.org/debian sid/main i386 libjpeg62-turbo i386 1:2.0.6-4 [160 kB] Get:188 http://mirror.einval.org/debian sid/main i386 libjbig0 i386 2.1-3.1+b2 [31.5 kB] Get:189 http://mirror.einval.org/debian sid/main i386 libwebp6 i386 0.6.1-2.1 [269 kB] Get:190 http://mirror.einval.org/debian sid/main i386 libtiff5 i386 4.2.0-1 [305 kB] Get:191 http://mirror.einval.org/debian sid/main i386 libxau6 i386 1:1.0.9-1 [20.0 kB] Get:192 http://mirror.einval.org/debian sid/main i386 libxdmcp6 i386 1:1.1.2-3 [26.7 kB] Get:193 http://mirror.einval.org/debian sid/main i386 libxcb1 i386 1.14-3 [144 kB] Get:194 http://mirror.einval.org/debian sid/main arm64 libx11-data all 2:1.7.1-1 [310 kB] Get:195 http://mirror.einval.org/debian sid/main i386 libx11-6 i386 2:1.7.1-1 [796 kB] Get:196 http://mirror.einval.org/debian sid/main i386 libxpm4 i386 1:3.5.12-1 [50.9 kB] Get:197 http://mirror.einval.org/debian sid/main i386 libgd3 i386 2.3.0-2 [142 kB] Get:198 http://mirror.einval.org/debian sid/main i386 libjpeg62-turbo-dev i386 1:2.0.6-4 [299 kB] Get:199 http://mirror.einval.org/debian sid/main i386 libjpeg-dev i386 1:2.0.6-4 [67.8 kB] Get:200 http://mirror.einval.org/debian sid/main arm64 xorg-sgml-doctools all 1:1.11-1.1 [22.1 kB] Get:201 http://mirror.einval.org/debian sid/main arm64 x11proto-dev all 2020.1-1 [594 kB] Get:202 http://mirror.einval.org/debian sid/main i386 libxau-dev i386 1:1.0.9-1 [23.3 kB] Get:203 http://mirror.einval.org/debian sid/main i386 libxdmcp-dev i386 1:1.1.2-3 [42.7 kB] Get:204 http://mirror.einval.org/debian sid/main arm64 xtrans-dev all 1.4.0-1 [98.7 kB] Get:205 http://mirror.einval.org/debian sid/main i386 libpthread-stubs0-dev i386 0.4-1 [5340 B] Get:206 http://mirror.einval.org/debian sid/main i386 libxcb1-dev i386 1.14-3 [181 kB] Get:207 http://mirror.einval.org/debian sid/main i386 libx11-dev i386 2:1.7.1-1 [875 kB] Get:208 http://mirror.einval.org/debian sid/main i386 libxpm-dev i386 1:3.5.12-1 [107 kB] Get:209 http://mirror.einval.org/debian sid/main arm64 x11-common all 1:7.7+22 [252 kB] Get:210 http://mirror.einval.org/debian sid/main i386 libice6 i386 2:1.0.10-1 [60.8 kB] Get:211 http://mirror.einval.org/debian sid/main i386 libsm6 i386 2:1.2.3-1 [35.7 kB] Get:212 http://mirror.einval.org/debian sid/main i386 libxt6 i386 1:1.2.0-1 [195 kB] Get:213 http://mirror.einval.org/debian sid/main i386 libice-dev i386 2:1.0.10-1 [70.5 kB] Get:214 http://mirror.einval.org/debian sid/main i386 libsm-dev i386 2:1.2.3-1 [38.8 kB] Get:215 http://mirror.einval.org/debian sid/main i386 libxt-dev i386 1:1.2.0-1 [421 kB] Get:216 http://mirror.einval.org/debian sid/main i386 libvpx6 i386 1.9.0-1 [808 kB] Get:217 http://mirror.einval.org/debian sid/main i386 libvpx-dev i386 1.9.0-1 [959 kB] Get:218 http://mirror.einval.org/debian sid/main i386 libjbig-dev i386 2.1-3.1+b2 [30.8 kB] Get:219 http://mirror.einval.org/debian sid/main i386 liblzma-dev i386 5.2.5-2 [240 kB] Get:220 http://mirror.einval.org/debian sid/main i386 libtiffxx5 i386 4.2.0-1 [129 kB] Get:221 http://mirror.einval.org/debian sid/main i386 libtiff-dev i386 4.2.0-1 [438 kB] Get:222 http://mirror.einval.org/debian sid/main i386 libgd-dev i386 2.3.0-2 [283 kB] Get:223 http://mirror.einval.org/debian sid/main arm64 libjs-jquery all 3.5.1+dfsg+~3.5.5-7 [315 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 302 MB in 4s (78.8 MB/s) Selecting previously unselected package bsdextrautils. 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Setting up libconfig-inifiles-perl (3.000003-1) ... Setting up libpipeline1:arm64 (1.5.3-1) ... Setting up libboost-system1.74.0:i386 (1.74.0-9) ... Setting up libxapian30:arm64 (1.4.18-3) ... Setting up libfile-which-perl (1.23-1) ... Setting up libfftw3-single3:arm64 (3.3.8-2) ... Setting up bsdextrautils (2.36.1-7) ... update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode Setting up libicu67:arm64 (67.1-7) ... Setting up libmagic-mgc (1:5.39-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libglib2.0-0:arm64 (2.66.8-1) ... No schema files found: doing nothing. Setting up binutils-i686-linux-gnu (2.35.2-2) ... Setting up libdebhelper-perl (13.3.4) ... Setting up x11-common (1:7.7+22) ... invoke-rc.d: could not determine current runlevel All runlevel operations denied by policy invoke-rc.d: policy-rc.d denied execution of start. Setting up libmagic1:arm64 (1:5.39-3) ... Setting up linux-libc-dev:i386 (5.10.46-1) ... 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Setting up libxml-libxml-perl (2.0134+dfsg-2+b1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up debhelper (13.3.4) ... Setting up libubsan1-i386-cross (10.2.1-6cross1) ... Setting up libgcc-10-dev-i386-cross (10.2.1-6cross1) ... Setting up libxml-simple-perl (2.25-1) ... Setting up libstdc++-10-dev-i386-cross (10.2.1-6cross1) ... Setting up gcc-10-i686-linux-gnu (10.2.1-6cross1) ... Setting up libconfig-auto-perl (0.44-1.1) ... Setting up gcc-i686-linux-gnu (4:10.2.1-1) ... Setting up g++-10-i686-linux-gnu (10.2.1-6cross1) ... Setting up libdebian-dpkgcross-perl (2.6.18+nmu1) ... Setting up g++-i686-linux-gnu (4:10.2.1-1) ... Setting up dpkg-cross (2.6.18+nmu1) ... 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Setting up sbuild-build-depends-main-dummy:i386 (0.invalid.0) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (i386 included in any all) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 5.9.0-0.bpo.2-arm64 #1 SMP Debian 5.9.6-1~bpo10+1 (2020-11-19) arm64 (aarch64) Toolchain package versions: binutils_2.35.2-2 dpkg-dev_1.20.9 g++-10_10.2.1-6 gcc-10_10.2.1-6 libc6-dev_2.31-12 libstdc++-10-dev_10.2.1-6 libstdc++-10-dev-i386-cross_10.2.1-6cross1 libstdc++6_10.2.1-6 libstdc++6-i386-cross_10.2.1-6cross1 linux-libc-dev_5.10.46-1 Package versions: adduser_3.118 apt_2.2.4 autoconf_2.69-14 automake_1:1.16.3-2 autopoint_0.21-4 autotools-dev_20180224.1+nmu1 base-files_11.1 base-passwd_3.5.50 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libconfig-inifiles-perl_3.000003-1 libcrypt-dev_1:4.4.18-4 libcrypt1_1:4.4.18-4 libctf-nobfd0_2.35.2-2 libctf0_2.35.2-2 libdb5.3_5.3.28+dfsg1-0.8 libdebconfclient0_0.259 libdebhelper-perl_13.3.4 libdebian-dpkgcross-perl_2.6.18+nmu1 libdeflate-dev_1.7-1 libdeflate0_1.7-1 libdpkg-perl_1.20.9 libedit2_3.1-20191231-2+b1 libeigen3-dev_3.3.9-2 libelf1_0.183-3 libexpat1_2.2.10-2 libexpat1-dev_2.2.10-2 libfakeroot_1.25.3-1.1 libffi7_3.3-6 libfftw3-bin_3.3.8-2 libfftw3-dev_3.3.8-2 libfftw3-double3_3.3.8-2 libfftw3-long3_3.3.8-2 libfftw3-quad3_3.3.8-2 libfftw3-single3_3.3.8-2 libfile-homedir-perl_1.006-1 libfile-stripnondeterminism-perl_1.12.0-1 libfile-which-perl_1.23-1 libfontconfig-dev_2.13.1-4.2 libfontconfig1_2.13.1-4.2 libfreetype-dev_2.10.4+dfsg-1 libfreetype6_2.10.4+dfsg-1 libfreetype6-dev_2.10.4+dfsg-1 libgcc-10-dev_10.2.1-6 libgcc-10-dev-i386-cross_10.2.1-6cross1 libgcc-s1_10.2.1-6 libgcc-s1-i386-cross_10.2.1-6cross1 libgcrypt20_1.8.7-6 libgd-dev_2.3.0-2 libgd3_2.3.0-2 libgdbm-compat4_1.19-2 libgdbm6_1.19-2 libglib2.0-0_2.66.8-1 libgmp10_2:6.2.1+dfsg-1 libgnutls30_3.7.1-5 libgomp1_10.2.1-6 libgomp1-i386-cross_10.2.1-6cross1 libgpg-error0_1.38-2 libgssapi-krb5-2_1.18.3-5 libhogweed6_3.7.3-1 libice-dev_2:1.0.10-1 libice6_2:1.0.10-1 libicu-dev_67.1-7 libicu67_67.1-7 libidn2-0_2.3.0-5 libio-string-perl_1.08-3.1 libisl23_0.23-1 libitm1_10.2.1-6 libitm1-i386-cross_10.2.1-6cross1 libjbig-dev_2.1-3.1+b2 libjbig0_2.1-3.1+b2 libjpeg-dev_1:2.0.6-4 libjpeg62-turbo_1:2.0.6-4 libjpeg62-turbo-dev_1:2.0.6-4 libjs-jquery_3.5.1+dfsg+~3.5.5-7 libk5crypto3_1.18.3-5 libkeyutils1_1.6.1-2 libkrb5-3_1.18.3-5 libkrb5support0_1.18.3-5 libllvm11_1:11.0.1-2 liblocale-gettext-perl_1.07-4+b1 liblsan0_10.2.1-6 liblz4-1_1.9.3-2 liblzma-dev_5.2.5-2 liblzma5_5.2.5-2 libmagic-mgc_1:5.39-3 libmagic1_1:5.39-3 libmd0_1.0.3-3 libmount1_2.36.1-7 libmpc3_1.2.0-1 libmpfr6_4.1.0-3 libnettle8_3.7.3-1 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libosp5_1.5.2-13+b2 libp11-kit0_0.23.22-1 libpam-modules_1.4.0-7 libpam-modules-bin_1.4.0-7 libpam-runtime_1.4.0-7 libpam0g_1.4.0-7 libpcre2-8-0_10.36-2 libpcre3_2:8.39-13 libperl5.32_5.32.1-4 libpipeline1_1.5.3-1 libpng-dev_1.6.37-3 libpng16-16_1.6.37-3 libpthread-stubs0-dev_0.4-1 libquadmath0_10.2.1-6 libquadmath0-i386-cross_10.2.1-6cross1 libseccomp2_2.5.1-1 libselinux1_3.1-3 libsemanage-common_3.1-1 libsemanage1_3.1-1+b2 libsepol1_3.1-1 libsigsegv2_2.13-1 libsm-dev_2:1.2.3-1 libsm6_2:1.2.3-1 libsmartcols1_2.36.1-7 libssl1.1_1.1.1k-1 libstdc++-10-dev_10.2.1-6 libstdc++-10-dev-i386-cross_10.2.1-6cross1 libstdc++6_10.2.1-6 libstdc++6-i386-cross_10.2.1-6cross1 libsub-override-perl_0.09-2 libsystemd0_247.3-5 libtasn1-6_4.16.0-2 libtiff-dev_4.2.0-1 libtiff5_4.2.0-1 libtiffxx5_4.2.0-1 libtinfo6_6.2+20201114-2 libtirpc-common_1.3.1-1 libtirpc-dev_1.3.1-1 libtirpc3_1.3.1-1 libtool_2.4.6-15 libtsan0_10.2.1-6 libubsan1_10.2.1-6 libubsan1-i386-cross_10.2.1-6cross1 libuchardet0_0.0.7-1 libudev1_247.3-5 libunistring2_0.9.10-4 libuuid1_2.36.1-7 libvpx-dev_1.9.0-1 libvpx6_1.9.0-1 libwebp6_0.6.1-2.1 libx11-6_2:1.7.1-1 libx11-data_2:1.7.1-1 libx11-dev_2:1.7.1-1 libxapian30_1.4.18-3 libxau-dev_1:1.0.9-1 libxau6_1:1.0.9-1 libxcb1_1.14-3 libxcb1-dev_1.14-3 libxdmcp-dev_1:1.1.2-3 libxdmcp6_1:1.1.2-3 libxml-libxml-perl_2.0134+dfsg-2+b1 libxml-namespacesupport-perl_1.12-1.1 libxml-sax-base-perl_1.09-1.1 libxml-sax-perl_1.02+dfsg-1 libxml-simple-perl_2.25-1 libxml2_2.9.10+dfsg-6.7 libxpm-dev_1:3.5.12-1 libxpm4_1:3.5.12-1 libxt-dev_1:1.2.0-1 libxt6_1:1.2.0-1 libxxhash0_0.8.0-2 libyaml-perl_1.30-1 libz3-4_4.8.10-1 libzstd1_1.4.8+dfsg-2.1 linux-libc-dev_5.10.46-1 linux-libc-dev-i386-cross_5.10.13-1cross4 login_1:4.8.1-1 lsb-base_11.1.0 m4_1.4.18-5 make_4.3-4.1 man-db_2.9.4-2 mawk_1.3.4.20200120-2 mount_2.36.1-7 ncurses-base_6.2+20201114-2 ncurses-bin_6.2+20201114-2 opensp_1.5.2-13+b2 passwd_1:4.8.1-1 patch_2.7.6-7 perl_5.32.1-4 perl-base_5.32.1-4 perl-modules-5.32_5.32.1-4 pkg-config_0.29.2-1 po-debconf_1.0.21+nmu1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.14 sgml-base_1.30 sgml-data_2.0.11+nmu1 sysvinit-utils_2.96-7 tar_1.34+dfsg-1 tzdata_2021a-1 ucf_3.0043 util-linux_2.36.1-7 uuid-dev_2.36.1-7 x11-common_1:7.7+22 x11proto-dev_2020.1-1 xml-core_0.18+nmu1 xorg-sgml-doctools_1:1.11-1.1 xtrans-dev_1.4.0-1 xz-utils_5.2.5-2 zlib1g_1:1.2.11.dfsg-2 zlib1g-dev_1:1.2.11.dfsg-2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: libpwiz Binary: libpwiz-dev, libpwiz3, libpwiz-tools, libpwiz-doc Architecture: any all Version: 3.0.18342-4 Maintainer: The Debichem Group Uploaders: Filippo Rusconi Homepage: http://proteowizard.sourceforge.net/downloads.shtml Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/debichem-team/libpwiz Vcs-Git: https://salsa.debian.org/debichem-team/libpwiz.git Build-Depends: debhelper-compat (= 12), dpkg-dev (>= 1.16.1~), chrpath (>= 0.13), libboost-tools-dev, doxygen (>= 1.8.1.2), docbook-to-man, libboost-program-options-dev (>= 1.62.0), libboost-date-time-dev (>= 1.62.0), libboost-iostreams-dev (>= 1.62.0), libboost-regex-dev (>= 1.62.0), libboost-filesystem-dev (>= 1.62.0), libboost-thread-dev (>= 1.62.0), libboost-system-dev (>= 1.62.0), libboost-chrono-dev (>= 1.62.0), libboost-dev (>= 1.62.0), libfftw3-dev (>= 3.3.2), libgd-dev, libjs-jquery, libeigen3-dev Package-List: libpwiz-dev deb libdevel optional arch=any libpwiz-doc deb doc optional arch=all libpwiz-tools deb science optional arch=any libpwiz3 deb libs optional arch=any Checksums-Sha1: d653a9eefc8b97ba6c2a0a57ef2235dab10d7e7d 3196944 libpwiz_3.0.18342.orig.tar.gz 5fc4abb664c66d936c4b3040a458968db4046da4 20004 libpwiz_3.0.18342-4.debian.tar.xz Checksums-Sha256: c43f94529fd4de8e6928befbd522308a6a965fef8970e6bc84613aa0a1338c98 3196944 libpwiz_3.0.18342.orig.tar.gz b1a7919fcc47ff7e5ef4a55fd73406d2bb9d74247e109ddd7be1ec74d159de9c 20004 libpwiz_3.0.18342-4.debian.tar.xz Files: 7b23d6a4f20bc577f23fa74880729e2d 3196944 libpwiz_3.0.18342.orig.tar.gz 6ddd0441eed17f734b277a667d670e6a 20004 libpwiz_3.0.18342-4.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIyBAEBCAAdFiEEsFMwThfW1Bndm0ZRQatITXaUz0IFAl9x8egACgkQQatITXaU z0LtJA/4+Gnjmw7VUX+sBaJ0zwdXP4VvjsocTatVDp5qXNNXV7VFbxc9SZ8FM70k lL68u3LLosD2ADWzJjDvZZompiWWhiVN/qID8umkwbOte8GheHG3fBDBkwT6EdfS +koPrJP7mx6D5FbneIn81oP5uiKGVMo/KEEVM1pXOXaWe/X9+MQZxOe68qR3JocG EyIvKvcwbfETQkHoCfkaIwiZ8U/PZYvPqt0lXxOo0oYVKFS3/frA+YCvJk0/Kn8o 13jp1cEWBKhwPMX3ZppVvUV63pAS6FHJovFs3egt4U0JMjX9uLWbFVlBJ3Y0UUXx Vi1iC/AvCweGBMevWdClitWK5kKR1wkgVup6QpjrrUV4htzH48Xp2rEHN24a6CLc lW2NxdpPc+hPBGKjqWPDU5yg8/sOftUk6VGGCxankcYW6D+/W6N23IXyjQmsLuJ3 OnekvsrGaHBKR1f429RjBxZdeBF8V1B6W5zFZhWgby4mIgiv7ydbdq9qRsp8QMJa fR71uhR+9fqvHSkPL+QEiM0Qnv1kKPKZSJgXCQEytG/JyI/H+/nLDgV6Xjq6fJuO +q44lRpStbbTMiscph9mPwSoSYogt1K/FZkFfLdiYvv7TxepFPwvl5wGLE8cAgte 7425h/xUtTbNvbLMLrVTFUjEkpIGYS0S9XA+GUN9FfyBUG3w9g== =Ltwo -----END PGP SIGNATURE----- gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.F7xMpTQ0/trustedkeys.kbx': General error gpgv: Signature made Mon Sep 28 14:23:36 2020 UTC gpgv: using RSA key B053304E17D6D419DD9B465141AB484D7694CF42 gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./libpwiz_3.0.18342-4.dsc dpkg-source: info: extracting libpwiz in /<> dpkg-source: info: unpacking libpwiz_3.0.18342.orig.tar.gz dpkg-source: info: unpacking libpwiz_3.0.18342-4.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying gcc-boost-fail-cast-tribool-to-bool-force-it.patch Check disk space ---------------- Sufficient free space for build +------------------------------------------------------------------------------+ | Starting Timed Build Commands | +------------------------------------------------------------------------------+ ulimit -c --------- 0 I: Finished running 'ulimit -c'. Finished processing commands. -------------------------------------------------------------------------------- User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.i386 DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_GB.UTF-8 LC_ALL=C.UTF-8 LOGNAME=helmutg PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=crossqa-sid SCHROOT_CHROOT_NAME=crossqa-sid SCHROOT_COMMAND=env SCHROOT_GID=1002 SCHROOT_GROUP=helmutg SCHROOT_SESSION_ID=crossqa-sid-63331f1e-22bd-4a4a-ae83-39ef41fc8f77 SCHROOT_UID=1002 SCHROOT_USER=helmutg SHELL=/bin/sh USER=helmutg dpkg-buildpackage ----------------- Command: dpkg-buildpackage -ai386 -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package libpwiz dpkg-buildpackage: info: source version 3.0.18342-4 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Filippo Rusconi dpkg-architecture: warning: specified GNU system type i686-linux-gnu does not match CC system type aarch64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 fakeroot debian/rules clean "---------------------------------------" DEB_HOST_GNU_TYPE: i686-linux-gnu DEB_BUILD_GNU_TYPE aarch64-linux-gnu DEB_BUILD_OPTIONS: nocheck parallel=1 DEB_HOST_MULTIARCH: i386-linux-gnu "---------------------------------------" entering the clean target dh_testdir dh_testroot rm -f debian/msconvert.1 rm -f debian/idconvert.1 rm -f debian/mscat.1 rm -f debian/txt2mzml.1 rm -f autools/conf.log autools/config.status rm -rf /<>/debian/build rm -rf debian/includes rm -rf doc/dox/html rm -f configure-stamp rm -f build-arch-stamp rm -f build-indep-stamp dh_clean rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/libpwiz-dev.substvars debian/libpwiz3.substvars debian/libpwiz-tools.substvars debian/libpwiz-doc.substvars debian/files rm -fr -- debian/libpwiz-dev/ debian/tmp/ debian/libpwiz3/ debian/libpwiz-tools/ debian/libpwiz-doc/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \) debian/rules build-arch "---------------------------------------" DEB_HOST_GNU_TYPE: i686-linux-gnu DEB_BUILD_GNU_TYPE aarch64-linux-gnu DEB_BUILD_OPTIONS: nocheck parallel=1 DEB_HOST_MULTIARCH: i386-linux-gnu "---------------------------------------" entering the configure target dh_testdir dh_prep -a rm -f -- debian/libpwiz-dev.substvars debian/libpwiz3.substvars debian/libpwiz-tools.substvars rm -fr -- debian/.debhelper/generated/libpwiz-dev/ debian/libpwiz-dev/ debian/tmp/ debian/.debhelper/generated/libpwiz3/ debian/libpwiz3/ debian/.debhelper/generated/libpwiz-tools/ debian/libpwiz-tools/ mkdir -p /<>/debian/build cp -rpf autotools libraries pwiz pwiz_tools /<>/debian/build echo "BOOST_LDPATH = /usr/lib/i386-linux-gnu" > /<>/debian/build/autotools/Makefile.am-tmp cat /<>/debian/build/autotools/Makefile.am >> /<>/debian/build/autotools/Makefile.am-tmp sed -i '/^AM_CPPFLAGS/ s|$| -I "/usr/include/eigen3/Eigen"|' /<>/debian/build/autotools/Makefile.am-tmp sed -i '/^AM_CPPFLAGS/ s|$| -I "/<>/debian/build/libraries/Eigen"|' /<>/debian/build/autotools/Makefile.am-tmp sed -i '/^AM_CPPFLAGS/ s|$| -I "/<>/debian/build/libraries/libsvm-3.0"|' /<>/debian/build/autotools/Makefile.am-tmp mv /<>/debian/build/autotools/Makefile.am-tmp /<>/debian/build/autotools/Makefile.am rm -f /<>/debian/build/libraries/boost_aux/boost/interprocess/detail/* cd /<>/debian/build/autotools && autoreconf --force -i && cd .. && \ autotools/configure --prefix=/usr --build=aarch64-linux-gnu --host=i686-linux-gnu libtoolize: putting auxiliary files in '.'. libtoolize: copying file './ltmain.sh' libtoolize: putting macros in '.'. libtoolize: copying file './libtool.m4' libtoolize: copying file './ltoptions.m4' libtoolize: copying file './ltsugar.m4' libtoolize: copying file './ltversion.m4' libtoolize: copying file './lt~obsolete.m4' libtoolize: Consider adding 'AC_CONFIG_MACRO_DIRS([m4])' to configure.ac and libtoolize: rerunning libtoolize, to keep the correct libtool macros in-tree. configure.ac:11: installing './compile' configure.ac:6: installing './missing' Makefile.am: installing './depcomp' configure: loading site script /etc/dpkg-cross/cross-config.i386 checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for i686-linux-gnu-strip... i686-linux-gnu-strip checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking build system type... aarch64-unknown-linux-gnu checking host system type... i686-pc-linux-gnu checking how to print strings... printf checking whether make supports the include directive... yes (GNU style) checking for i686-linux-gnu-gcc... i686-linux-gnu-gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... yes checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether i686-linux-gnu-gcc accepts -g... yes checking for i686-linux-gnu-gcc option to accept ISO C89... none needed checking whether i686-linux-gnu-gcc understands -c and -o together... yes checking dependency style of i686-linux-gnu-gcc... gcc3 checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by i686-linux-gnu-gcc... /usr/i686-linux-gnu/bin/ld checking if the linker (/usr/i686-linux-gnu/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/i686-linux-gnu-nm -B checking the name lister (/usr/bin/i686-linux-gnu-nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert aarch64-unknown-linux-gnu file names to i686-pc-linux-gnu format... func_convert_file_noop checking how to convert aarch64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/i686-linux-gnu/bin/ld option to reload object files... -r checking for i686-linux-gnu-objdump... i686-linux-gnu-objdump checking how to recognize dependent libraries... pass_all checking for i686-linux-gnu-dlltool... no checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for i686-linux-gnu-ar... i686-linux-gnu-ar checking for archiver @FILE support... @ checking for i686-linux-gnu-strip... (cached) i686-linux-gnu-strip checking for i686-linux-gnu-ranlib... i686-linux-gnu-ranlib checking command to parse /usr/bin/i686-linux-gnu-nm -B output from i686-linux-gnu-gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for i686-linux-gnu-mt... no checking for mt... no checking if : is a manifest tool... no checking how to run the C preprocessor... i686-linux-gnu-gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if i686-linux-gnu-gcc supports -fno-rtti -fno-exceptions... no checking for i686-linux-gnu-gcc option to produce PIC... -fPIC -DPIC checking if i686-linux-gnu-gcc PIC flag -fPIC -DPIC works... yes checking if i686-linux-gnu-gcc static flag -static works... yes checking if i686-linux-gnu-gcc supports -c -o file.o... yes checking if i686-linux-gnu-gcc supports -c -o file.o... (cached) yes checking whether the i686-linux-gnu-gcc linker (/usr/i686-linux-gnu/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for gawk... (cached) mawk checking for i686-linux-gnu-g++... i686-linux-gnu-g++ checking whether we are using the GNU C++ compiler... yes checking whether i686-linux-gnu-g++ accepts -g... yes checking dependency style of i686-linux-gnu-g++... gcc3 checking how to run the C++ preprocessor... i686-linux-gnu-g++ -E checking for ld used by i686-linux-gnu-g++... /usr/i686-linux-gnu/bin/ld checking if the linker (/usr/i686-linux-gnu/bin/ld) is GNU ld... yes checking whether the i686-linux-gnu-g++ linker (/usr/i686-linux-gnu/bin/ld) supports shared libraries... yes checking for i686-linux-gnu-g++ option to produce PIC... -fPIC -DPIC checking if i686-linux-gnu-g++ PIC flag -fPIC -DPIC works... yes checking if i686-linux-gnu-g++ static flag -static works... yes checking if i686-linux-gnu-g++ supports -c -o file.o... yes checking if i686-linux-gnu-g++ supports -c -o file.o... (cached) yes checking whether the i686-linux-gnu-g++ linker (/usr/i686-linux-gnu/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for i686-linux-gnu-gcc... (cached) i686-linux-gnu-gcc checking whether we are using the GNU C compiler... (cached) yes checking whether i686-linux-gnu-gcc accepts -g... (cached) yes checking for i686-linux-gnu-gcc option to accept ISO C89... (cached) none needed checking whether i686-linux-gnu-gcc understands -c and -o together... (cached) yes checking dependency style of i686-linux-gnu-gcc... (cached) gcc3 checking fcntl.h usability... yes checking fcntl.h presence... yes checking for fcntl.h... yes checking float.h usability... yes checking float.h presence... yes checking for float.h... yes checking for inttypes.h... 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(cached) yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: executing depfiles commands config.status: executing libtool commands entering the configure-stamp target touch configure-stamp entering the build-arch-stamp target cd /<>/debian/build && \ VERBOSE=1 BOOST_LDPATH=/usr/lib/i386-linux-gnu /usr/bin/make && \ VERBOSE=1 DESTDIR=/<>/debian/build /usr/bin/make install make[1]: Entering directory '/<>/debian/build' depbase=`echo pwiz_tools/examples/txt2mzml.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ i686-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 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pwiz_tools/examples/txt2mzml.o -MD -MP -MF $depbase.Tpo -c -o pwiz_tools/examples/txt2mzml.o pwiz_tools/examples/txt2mzml.cpp &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo libraries/boost_aux/libs/nowide/src/iostream.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 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-DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 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-DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT libraries/boost_aux/libs/nowide/src/iostream.lo -MD -MP -MF libraries/boost_aux/libs/nowide/src/.deps/iostream.Tpo -c libraries/boost_aux/libs/nowide/src/iostream.cpp -fPIC -DPIC -o libraries/boost_aux/libs/nowide/src/.libs/iostream.o libtool: compile: i686-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 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libraries/boost_aux/libs/nowide/src/iostream.lo -MD -MP -MF libraries/boost_aux/libs/nowide/src/.deps/iostream.Tpo -c libraries/boost_aux/libs/nowide/src/iostream.cpp -o libraries/boost_aux/libs/nowide/src/iostream.o >/dev/null 2>&1 depbase=`echo pwiz/utility/math/erf.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 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/<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/utility/minimxml/XMLWriter.lo -MD -MP -MF pwiz/utility/minimxml/.deps/XMLWriter.Tpo -c pwiz/utility/minimxml/XMLWriter.cpp -o pwiz/utility/minimxml/XMLWriter.o >/dev/null 2>&1 depbase=`echo pwiz/data/tradata/DefaultReaderList.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 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-DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/peptideid/PeptideIDMap.lo -MD -MP -MF pwiz/analysis/peptideid/.deps/PeptideIDMap.Tpo -c pwiz/analysis/peptideid/PeptideIDMap.cpp -fPIC -DPIC -o pwiz/analysis/peptideid/.libs/PeptideIDMap.o libtool: compile: i686-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 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-DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/peptideid/PeptideIDMap.lo -MD -MP -MF pwiz/analysis/peptideid/.deps/PeptideIDMap.Tpo -c pwiz/analysis/peptideid/PeptideIDMap.cpp -o pwiz/analysis/peptideid/PeptideIDMap.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/frequency/TruncatedLorentzianEstimator.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/frequency/TruncatedLorentzianEstimator.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/frequency/TruncatedLorentzianEstimator.lo pwiz/analysis/frequency/TruncatedLorentzianEstimator.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: i686-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/frequency/TruncatedLorentzianEstimator.lo -MD -MP -MF pwiz/analysis/frequency/.deps/TruncatedLorentzianEstimator.Tpo -c pwiz/analysis/frequency/TruncatedLorentzianEstimator.cpp -fPIC -DPIC -o pwiz/analysis/frequency/.libs/TruncatedLorentzianEstimator.o In file included from pwiz/analysis/frequency/TruncatedLorentzianEstimator.hpp:30, from pwiz/analysis/frequency/TruncatedLorentzianEstimator.cpp:26: ./pwiz/data/misc/FrequencyData.hpp:157:10: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 157 | std::auto_ptr impl_; | ^~~~~~~~ In file included from /usr/i686-linux-gnu/include/c++/10/bits/locale_conv.h:41, from /usr/i686-linux-gnu/include/c++/10/locale:43, from /usr/i686-linux-gnu/include/c++/10/iomanip:43, from ./pwiz/data/misc/SampleDatum.hpp:30, from pwiz/analysis/frequency/ParametrizedFunction.hpp:29, from pwiz/analysis/frequency/TruncatedLorentzian.hpp:29, from pwiz/analysis/frequency/TruncatedLorentzianParameters.hpp:29, from pwiz/analysis/frequency/TruncatedLorentzianEstimator.hpp:29, from pwiz/analysis/frequency/TruncatedLorentzianEstimator.cpp:26: /usr/i686-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from pwiz/analysis/frequency/TruncatedLorentzianEstimator.cpp:26: pwiz/analysis/frequency/TruncatedLorentzianEstimator.hpp:43:17: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 43 | static std::auto_ptr create(); | ^~~~~~~~ In file included from /usr/i686-linux-gnu/include/c++/10/bits/locale_conv.h:41, from /usr/i686-linux-gnu/include/c++/10/locale:43, from /usr/i686-linux-gnu/include/c++/10/iomanip:43, from ./pwiz/data/misc/SampleDatum.hpp:30, from pwiz/analysis/frequency/ParametrizedFunction.hpp:29, from pwiz/analysis/frequency/TruncatedLorentzian.hpp:29, from pwiz/analysis/frequency/TruncatedLorentzianParameters.hpp:29, from pwiz/analysis/frequency/TruncatedLorentzianEstimator.hpp:29, from pwiz/analysis/frequency/TruncatedLorentzianEstimator.cpp:26: /usr/i686-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from pwiz/analysis/frequency/TruncatedLorentzianEstimator.cpp:27: pwiz/analysis/frequency/ParameterEstimator.hpp:49:17: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 49 | static std::auto_ptr create(const Function& function, | ^~~~~~~~ In file included from /usr/i686-linux-gnu/include/c++/10/bits/locale_conv.h:41, from /usr/i686-linux-gnu/include/c++/10/locale:43, from /usr/i686-linux-gnu/include/c++/10/iomanip:43, from ./pwiz/data/misc/SampleDatum.hpp:30, from pwiz/analysis/frequency/ParametrizedFunction.hpp:29, from pwiz/analysis/frequency/TruncatedLorentzian.hpp:29, from pwiz/analysis/frequency/TruncatedLorentzianParameters.hpp:29, from pwiz/analysis/frequency/TruncatedLorentzianEstimator.hpp:29, from pwiz/analysis/frequency/TruncatedLorentzianEstimator.cpp:26: /usr/i686-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ pwiz/analysis/frequency/TruncatedLorentzianEstimator.cpp:62:15: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 62 | PWIZ_API_DECL auto_ptr TruncatedLorentzianEstimator::create() | ^~~~~~~~ In file included from /usr/i686-linux-gnu/include/c++/10/bits/locale_conv.h:41, from /usr/i686-linux-gnu/include/c++/10/locale:43, from /usr/i686-linux-gnu/include/c++/10/iomanip:43, from ./pwiz/data/misc/SampleDatum.hpp:30, from pwiz/analysis/frequency/ParametrizedFunction.hpp:29, from pwiz/analysis/frequency/TruncatedLorentzian.hpp:29, from pwiz/analysis/frequency/TruncatedLorentzianParameters.hpp:29, from pwiz/analysis/frequency/TruncatedLorentzianEstimator.hpp:29, from pwiz/analysis/frequency/TruncatedLorentzianEstimator.cpp:26: /usr/i686-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ pwiz/analysis/frequency/TruncatedLorentzianEstimator.cpp: In static member function ‘static std::auto_ptr pwiz::frequency::TruncatedLorentzianEstimator::create()’: pwiz/analysis/frequency/TruncatedLorentzianEstimator.cpp:64:12: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 64 | return auto_ptr(new TruncatedLorentzianEstimatorImpl); | ^~~~~~~~ In file included from /usr/i686-linux-gnu/include/c++/10/bits/locale_conv.h:41, from /usr/i686-linux-gnu/include/c++/10/locale:43, from /usr/i686-linux-gnu/include/c++/10/iomanip:43, from ./pwiz/data/misc/SampleDatum.hpp:30, from pwiz/analysis/frequency/ParametrizedFunction.hpp:29, from pwiz/analysis/frequency/TruncatedLorentzian.hpp:29, from pwiz/analysis/frequency/TruncatedLorentzianParameters.hpp:29, from pwiz/analysis/frequency/TruncatedLorentzianEstimator.hpp:29, from pwiz/analysis/frequency/TruncatedLorentzianEstimator.cpp:26: /usr/i686-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ pwiz/analysis/frequency/TruncatedLorentzianEstimator.cpp: In member function ‘virtual pwiz::frequency::TruncatedLorentzianParameters pwiz::frequency::TruncatedLorentzianEstimatorImpl::iteratedEstimate(const pwiz::data::FrequencyData&, const pwiz::frequency::TruncatedLorentzianParameters&, int) const’: pwiz/analysis/frequency/TruncatedLorentzianEstimator.cpp:146:5: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 146 | auto_ptr pe = | ^~~~~~~~ In file included from /usr/i686-linux-gnu/include/c++/10/bits/locale_conv.h:41, from /usr/i686-linux-gnu/include/c++/10/locale:43, from /usr/i686-linux-gnu/include/c++/10/iomanip:43, from ./pwiz/data/misc/SampleDatum.hpp:30, from pwiz/analysis/frequency/ParametrizedFunction.hpp:29, from pwiz/analysis/frequency/TruncatedLorentzian.hpp:29, from pwiz/analysis/frequency/TruncatedLorentzianParameters.hpp:29, from pwiz/analysis/frequency/TruncatedLorentzianEstimator.hpp:29, from pwiz/analysis/frequency/TruncatedLorentzianEstimator.cpp:26: /usr/i686-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ libtool: compile: i686-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 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-Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/frequency/TruncatedLorentzianEstimator.lo -MD -MP -MF pwiz/analysis/frequency/.deps/TruncatedLorentzianEstimator.Tpo -c pwiz/analysis/frequency/TruncatedLorentzianEstimator.cpp -o pwiz/analysis/frequency/TruncatedLorentzianEstimator.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/spectrum_processing/PrecursorRecalculatorDefault.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 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-DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/spectrum_processing/PrecursorRecalculatorDefault.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/spectrum_processing/PrecursorRecalculatorDefault.lo pwiz/analysis/spectrum_processing/PrecursorRecalculatorDefault.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: i686-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/spectrum_processing/PrecursorRecalculatorDefault.lo -MD -MP -MF pwiz/analysis/spectrum_processing/.deps/PrecursorRecalculatorDefault.Tpo -c pwiz/analysis/spectrum_processing/PrecursorRecalculatorDefault.cpp -fPIC -DPIC -o pwiz/analysis/spectrum_processing/.libs/PrecursorRecalculatorDefault.o libtool: compile: i686-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/spectrum_processing/PrecursorRecalculatorDefault.lo -MD -MP -MF pwiz/analysis/spectrum_processing/.deps/PrecursorRecalculatorDefault.Tpo -c pwiz/analysis/spectrum_processing/PrecursorRecalculatorDefault.cpp -o pwiz/analysis/spectrum_processing/PrecursorRecalculatorDefault.o >/dev/null 2>&1 depbase=`echo pwiz/utility/proteome/IPIFASTADatabase.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/utility/proteome/IPIFASTADatabase.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/utility/proteome/IPIFASTADatabase.lo pwiz/utility/proteome/IPIFASTADatabase.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: i686-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/utility/proteome/IPIFASTADatabase.lo -MD -MP -MF pwiz/utility/proteome/.deps/IPIFASTADatabase.Tpo -c pwiz/utility/proteome/IPIFASTADatabase.cpp -fPIC -DPIC -o pwiz/utility/proteome/.libs/IPIFASTADatabase.o In file included from pwiz/utility/proteome/IPIFASTADatabase.cpp:26: pwiz/utility/proteome/IPIFASTADatabase.hpp:72:10: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 72 | std::auto_ptr impl_; | ^~~~~~~~ In file included from /usr/i686-linux-gnu/include/c++/10/memory:83, from pwiz/utility/proteome/IPIFASTADatabase.hpp:29, from pwiz/utility/proteome/IPIFASTADatabase.cpp:26: /usr/i686-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ libtool: compile: i686-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" 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pwiz/utility/proteome/IPIFASTADatabase.cpp -o pwiz/utility/proteome/IPIFASTADatabase.o >/dev/null 2>&1 depbase=`echo pwiz/Version.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 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-DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 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-DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/msdata/Version.lo -MD -MP -MF pwiz/data/msdata/.deps/Version.Tpo -c pwiz/data/msdata/Version.cpp -o pwiz/data/msdata/Version.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/peakdetect/PeakelPicker.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 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/<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/peakdetect/PeakelPicker.lo -MD -MP -MF pwiz/analysis/peakdetect/.deps/PeakelPicker.Tpo -c pwiz/analysis/peakdetect/PeakelPicker.cpp -o pwiz/analysis/peakdetect/PeakelPicker.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 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-DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 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-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/utility/misc/TabReader.lo -MD -MP -MF pwiz/utility/misc/.deps/TabReader.Tpo -c pwiz/utility/misc/TabReader.cpp -fPIC -DPIC -o pwiz/utility/misc/.libs/TabReader.o libtool: compile: i686-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 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-DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/utility/misc/TabReader.lo -MD -MP -MF pwiz/utility/misc/.deps/TabReader.Tpo -c pwiz/utility/misc/TabReader.cpp -o pwiz/utility/misc/TabReader.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/peakdetect/FeatureModeler.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/peakdetect/FeatureModeler.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/peakdetect/FeatureModeler.lo pwiz/analysis/peakdetect/FeatureModeler.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: i686-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/peakdetect/FeatureModeler.lo -MD -MP -MF pwiz/analysis/peakdetect/.deps/FeatureModeler.Tpo -c pwiz/analysis/peakdetect/FeatureModeler.cpp -fPIC -DPIC -o pwiz/analysis/peakdetect/.libs/FeatureModeler.o In file included from ./pwiz/utility/chemistry/IsotopeEnvelopeEstimator.hpp:30, from pwiz/analysis/peakdetect/FeatureModeler.cpp:28: ./pwiz/utility/chemistry/IsotopeCalculator.hpp:55:10: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 55 | std::auto_ptr impl_; | ^~~~~~~~ In file included from /usr/i686-linux-gnu/include/c++/10/memory:83, from /usr/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35, from /usr/include/boost/smart_ptr/detail/shared_count.hpp:27, from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, from /usr/include/boost/shared_ptr.hpp:17, from ./pwiz/utility/misc/TabReader.hpp:29, from ./pwiz/utility/misc/MSIHandler.hpp:28, from ./pwiz/data/misc/PeakData.hpp:29, from pwiz/analysis/peakdetect/MZRTField.hpp:29, from pwiz/analysis/peakdetect/FeatureModeler.hpp:28, from pwiz/analysis/peakdetect/FeatureModeler.cpp:25: /usr/i686-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from pwiz/analysis/peakdetect/FeatureModeler.cpp:28: ./pwiz/utility/chemistry/IsotopeEnvelopeEstimator.hpp:74:10: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 74 | std::auto_ptr impl_; | ^~~~~~~~ In file included from /usr/i686-linux-gnu/include/c++/10/memory:83, from /usr/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35, from /usr/include/boost/smart_ptr/detail/shared_count.hpp:27, from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, from /usr/include/boost/shared_ptr.hpp:17, from ./pwiz/utility/misc/TabReader.hpp:29, from ./pwiz/utility/misc/MSIHandler.hpp:28, from ./pwiz/data/misc/PeakData.hpp:29, from pwiz/analysis/peakdetect/MZRTField.hpp:29, from pwiz/analysis/peakdetect/FeatureModeler.hpp:28, from pwiz/analysis/peakdetect/FeatureModeler.cpp:25: /usr/i686-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ libtool: compile: i686-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 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pwiz/data/proteome/DefaultReaderList.lo pwiz/data/proteome/DefaultReaderList.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: i686-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/proteome/DefaultReaderList.lo -MD -MP -MF pwiz/data/proteome/.deps/DefaultReaderList.Tpo -c pwiz/data/proteome/DefaultReaderList.cpp -fPIC -DPIC -o pwiz/data/proteome/.libs/DefaultReaderList.o libtool: compile: i686-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" 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-O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/proteome/DefaultReaderList.lo -MD -MP -MF pwiz/data/proteome/.deps/DefaultReaderList.Tpo -c pwiz/data/proteome/DefaultReaderList.cpp -o pwiz/data/proteome/DefaultReaderList.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/peptideid/PeptideID_pepXML.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 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pwiz/analysis/peptideid/PeptideID_pepXML.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: i686-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/peptideid/PeptideID_pepXML.lo -MD -MP -MF pwiz/analysis/peptideid/.deps/PeptideID_pepXML.Tpo -c pwiz/analysis/peptideid/PeptideID_pepXML.cpp -fPIC -DPIC -o pwiz/analysis/peptideid/.libs/PeptideID_pepXML.o libtool: compile: i686-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" 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-ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/peptideid/PeptideID_pepXML.lo -MD -MP -MF pwiz/analysis/peptideid/.deps/PeptideID_pepXML.Tpo -c pwiz/analysis/peptideid/PeptideID_pepXML.cpp -o pwiz/analysis/peptideid/PeptideID_pepXML.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/frequency/PeakDetectorMatchedFilterTestData.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" 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pwiz/analysis/frequency/PeakDetectorMatchedFilterTestData.lo pwiz/analysis/frequency/PeakDetectorMatchedFilterTestData.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: i686-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 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3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 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-DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 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-DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/common/CwtPeakDetector.lo -MD -MP -MF pwiz/analysis/common/.deps/CwtPeakDetector.Tpo -c pwiz/analysis/common/CwtPeakDetector.cpp -o pwiz/analysis/common/CwtPeakDetector.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/peakdetect/FeatureDetectorSimple.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/peakdetect/FeatureDetectorSimple.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/peakdetect/FeatureDetectorSimple.lo pwiz/analysis/peakdetect/FeatureDetectorSimple.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: i686-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/peakdetect/FeatureDetectorSimple.lo -MD -MP -MF pwiz/analysis/peakdetect/.deps/FeatureDetectorSimple.Tpo -c pwiz/analysis/peakdetect/FeatureDetectorSimple.cpp -fPIC -DPIC -o pwiz/analysis/peakdetect/.libs/FeatureDetectorSimple.o In file included from pwiz/analysis/peakdetect/FeatureDetector.hpp:27, from pwiz/analysis/peakdetect/FeatureDetectorSimple.hpp:26, from pwiz/analysis/peakdetect/FeatureDetectorSimple.cpp:25: pwiz/analysis/peakdetect/MZRTField.hpp: In instantiation of ‘struct pwiz::analysis::MZRTField’: ./pwiz/analysis/passive/MSDataAnalyzer.hpp:211:26: required from here pwiz/analysis/peakdetect/MZRTField.hpp:94:8: warning: ‘pwiz::analysis::MZRTField’ has a base ‘std::set, pwiz::analysis::{anonymous}::LessThan_MZRT, std::allocator > >’ whose type uses the anonymous namespace [-Wsubobject-linkage] 94 | struct MZRTField : public std::set< boost::shared_ptr, LessThan_MZRT > | ^~~~~~~~~ pwiz/analysis/peakdetect/MZRTField.hpp: In instantiation of ‘struct pwiz::analysis::MZRTField’: ./pwiz/analysis/passive/MSDataAnalyzer.hpp:211:26: required from here pwiz/analysis/peakdetect/MZRTField.hpp:94:8: warning: ‘pwiz::analysis::MZRTField’ has a base ‘std::set, pwiz::analysis::{anonymous}::LessThan_MZRT, std::allocator > >’ whose type uses the anonymous namespace [-Wsubobject-linkage] libtool: compile: i686-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/peakdetect/FeatureDetectorSimple.lo -MD -MP -MF pwiz/analysis/peakdetect/.deps/FeatureDetectorSimple.Tpo -c pwiz/analysis/peakdetect/FeatureDetectorSimple.cpp -o pwiz/analysis/peakdetect/FeatureDetectorSimple.o >/dev/null 2>&1 depbase=`echo pwiz/utility/misc/SHA1.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/utility/misc/SHA1.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/utility/misc/SHA1.lo pwiz/utility/misc/SHA1.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: i686-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 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-DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/utility/misc/SHA1.lo -MD -MP -MF pwiz/utility/misc/.deps/SHA1.Tpo -c pwiz/utility/misc/SHA1.cpp -o pwiz/utility/misc/SHA1.o >/dev/null 2>&1 depbase=`echo pwiz/utility/misc/VendorReaderTestHarness.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 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pwiz/data/vendor_readers/Bruker/Reader_Bruker.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: i686-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 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pwiz/data/msdata/ChromatogramList_mzML.lo pwiz/data/msdata/ChromatogramList_mzML.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: i686-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 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-D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/msdata/ChromatogramList_mzML.lo -MD -MP -MF pwiz/data/msdata/.deps/ChromatogramList_mzML.Tpo -c pwiz/data/msdata/ChromatogramList_mzML.cpp -o pwiz/data/msdata/ChromatogramList_mzML.o >/dev/null 2>&1 depbase=`echo pwiz/data/misc/MinimumPepXML.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" 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-DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/misc/MinimumPepXML.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/data/misc/MinimumPepXML.lo pwiz/data/misc/MinimumPepXML.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: i686-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/misc/MinimumPepXML.lo -MD -MP -MF pwiz/data/misc/.deps/MinimumPepXML.Tpo -c pwiz/data/misc/MinimumPepXML.cpp -fPIC -DPIC -o pwiz/data/misc/.libs/MinimumPepXML.o libtool: compile: i686-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/misc/MinimumPepXML.lo -MD -MP -MF pwiz/data/misc/.deps/MinimumPepXML.Tpo -c pwiz/data/misc/MinimumPepXML.cpp -o pwiz/data/misc/MinimumPepXML.o >/dev/null 2>&1 depbase=`echo pwiz/utility/chemistry/IsotopeEnvelopeEstimator.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/utility/chemistry/IsotopeEnvelopeEstimator.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/utility/chemistry/IsotopeEnvelopeEstimator.lo pwiz/utility/chemistry/IsotopeEnvelopeEstimator.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: i686-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/utility/chemistry/IsotopeEnvelopeEstimator.lo -MD -MP -MF pwiz/utility/chemistry/.deps/IsotopeEnvelopeEstimator.Tpo -c pwiz/utility/chemistry/IsotopeEnvelopeEstimator.cpp -fPIC -DPIC -o pwiz/utility/chemistry/.libs/IsotopeEnvelopeEstimator.o In file included from pwiz/utility/chemistry/IsotopeEnvelopeEstimator.hpp:30, from pwiz/utility/chemistry/IsotopeEnvelopeEstimator.cpp:26: pwiz/utility/chemistry/IsotopeCalculator.hpp:55:10: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 55 | std::auto_ptr impl_; | ^~~~~~~~ In file included from /usr/i686-linux-gnu/include/c++/10/memory:83, from /usr/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35, from /usr/include/boost/smart_ptr/detail/shared_count.hpp:27, from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, from /usr/include/boost/shared_ptr.hpp:17, from pwiz/utility/chemistry/Chemistry.hpp:33, from pwiz/utility/chemistry/IsotopeEnvelopeEstimator.hpp:29, from pwiz/utility/chemistry/IsotopeEnvelopeEstimator.cpp:26: /usr/i686-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from pwiz/utility/chemistry/IsotopeEnvelopeEstimator.cpp:26: pwiz/utility/chemistry/IsotopeEnvelopeEstimator.hpp:74:10: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 74 | std::auto_ptr impl_; | ^~~~~~~~ In file included from /usr/i686-linux-gnu/include/c++/10/memory:83, from /usr/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35, from /usr/include/boost/smart_ptr/detail/shared_count.hpp:27, from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, from /usr/include/boost/shared_ptr.hpp:17, from pwiz/utility/chemistry/Chemistry.hpp:33, from pwiz/utility/chemistry/IsotopeEnvelopeEstimator.hpp:29, from pwiz/utility/chemistry/IsotopeEnvelopeEstimator.cpp:26: /usr/i686-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ libtool: compile: i686-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 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-DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRecalculator.lo -MD -MP -MF pwiz/analysis/spectrum_processing/.deps/SpectrumList_PrecursorRecalculator.Tpo -c pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRecalculator.cpp -fPIC -DPIC -o pwiz/analysis/spectrum_processing/.libs/SpectrumList_PrecursorRecalculator.o libtool: compile: i686-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 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-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRecalculator.lo -MD -MP -MF pwiz/analysis/spectrum_processing/.deps/SpectrumList_PrecursorRecalculator.Tpo -c pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRecalculator.cpp -o pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRecalculator.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/proteome_processing/ProteinListFactory.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 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pwiz/analysis/proteome_processing/ProteinListFactory.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/proteome_processing/ProteinListFactory.lo pwiz/analysis/proteome_processing/ProteinListFactory.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: i686-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/proteome_processing/ProteinListFactory.lo -MD -MP -MF pwiz/analysis/proteome_processing/.deps/ProteinListFactory.Tpo -c pwiz/analysis/proteome_processing/ProteinListFactory.cpp -fPIC -DPIC -o pwiz/analysis/proteome_processing/.libs/ProteinListFactory.o libtool: compile: i686-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/proteome_processing/ProteinListFactory.lo -MD -MP -MF pwiz/analysis/proteome_processing/.deps/ProteinListFactory.Tpo -c pwiz/analysis/proteome_processing/ProteinListFactory.cpp -o pwiz/analysis/proteome_processing/ProteinListFactory.o >/dev/null 2>&1 depbase=`echo pwiz/utility/math/Stats.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/utility/math/Stats.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/utility/math/Stats.lo pwiz/utility/math/Stats.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: i686-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/utility/math/Stats.lo -MD -MP -MF pwiz/utility/math/.deps/Stats.Tpo -c pwiz/utility/math/Stats.cpp -fPIC -DPIC -o pwiz/utility/math/.libs/Stats.o In file included from pwiz/utility/math/Stats.cpp:26: pwiz/utility/math/Stats.hpp:57:10: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 57 | std::auto_ptr impl_; | ^~~~~~~~ In file included from /usr/i686-linux-gnu/include/c++/10/memory:83, from /usr/include/boost/numeric/ublas/fwd.hpp:18, from /usr/include/boost/numeric/ublas/detail/config.hpp:299, from /usr/include/boost/numeric/ublas/exception.hpp:19, from /usr/include/boost/numeric/ublas/storage.hpp:25, from /usr/include/boost/numeric/ublas/vector.hpp:21, from pwiz/utility/math/Stats.hpp:29, from pwiz/utility/math/Stats.cpp:26: /usr/i686-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ libtool: compile: i686-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 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pwiz/utility/math/.deps/Stats.Tpo -c pwiz/utility/math/Stats.cpp -o pwiz/utility/math/Stats.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/passive/RegionAnalyzer.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict 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pwiz/analysis/passive/RegionAnalyzer.o >/dev/null 2>&1 depbase=`echo pwiz/data/identdata/Serializer_Text.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 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pwiz/data/proteome/.deps/Serializer_FASTA.Tpo -c pwiz/data/proteome/Serializer_FASTA.cpp -fPIC -DPIC -o pwiz/data/proteome/.libs/Serializer_FASTA.o libtool: compile: i686-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 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-DPIC -o pwiz/data/proteome/.libs/Modification.o pwiz/data/proteome/Modification.cpp:89:5: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 89 | auto_ptr formula_; | ^~~~~~~~ In file included from /usr/i686-linux-gnu/include/c++/10/memory:83, from /usr/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35, from /usr/include/boost/smart_ptr/detail/shared_count.hpp:27, from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, from /usr/include/boost/shared_ptr.hpp:17, from ./pwiz/utility/chemistry/Chemistry.hpp:33, from pwiz/data/proteome/Peptide.hpp:29, from pwiz/data/proteome/Modification.hpp:30, from pwiz/data/proteome/Modification.cpp:27: /usr/i686-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ libtool: compile: i686-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" 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pwiz/analysis/spectrum_processing/.libs/SpectrumList_ChargeStateCalculator.o libtool: compile: i686-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 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-DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/proteome/Diff.lo -MD -MP -MF pwiz/data/proteome/.deps/Diff.Tpo -c pwiz/data/proteome/Diff.cpp -o pwiz/data/proteome/Diff.o >/dev/null 2>&1 depbase=`echo pwiz/utility/chemistry/Chemistry.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" 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-D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/identdata/Diff.lo -MD -MP -MF pwiz/data/identdata/.deps/Diff.Tpo -c pwiz/data/identdata/Diff.cpp -o pwiz/data/identdata/Diff.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/spectrum_processing/SpectrumList_Filter.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 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pwiz/analysis/spectrum_processing/SpectrumList_Filter.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: i686-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 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-DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/frequency/ParameterEstimator.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/frequency/ParameterEstimator.lo pwiz/analysis/frequency/ParameterEstimator.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: i686-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/frequency/ParameterEstimator.lo -MD -MP -MF pwiz/analysis/frequency/.deps/ParameterEstimator.Tpo -c pwiz/analysis/frequency/ParameterEstimator.cpp -fPIC -DPIC -o pwiz/analysis/frequency/.libs/ParameterEstimator.o In file included from pwiz/analysis/frequency/ParameterEstimator.cpp:24: pwiz/analysis/frequency/ParameterEstimator.hpp:49:17: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 49 | static std::auto_ptr create(const Function& function, | ^~~~~~~~ In file included from /usr/i686-linux-gnu/include/c++/10/bits/locale_conv.h:41, from /usr/i686-linux-gnu/include/c++/10/locale:43, from /usr/i686-linux-gnu/include/c++/10/iomanip:43, from ./pwiz/data/misc/SampleDatum.hpp:30, from pwiz/analysis/frequency/ParametrizedFunction.hpp:29, from pwiz/analysis/frequency/ParameterEstimator.hpp:29, from pwiz/analysis/frequency/ParameterEstimator.cpp:24: /usr/i686-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ pwiz/analysis/frequency/ParameterEstimator.cpp:65:1: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 65 | auto_ptr ParameterEstimator::create(const Function& function, | ^~~~~~~~ In file included from /usr/i686-linux-gnu/include/c++/10/bits/locale_conv.h:41, from /usr/i686-linux-gnu/include/c++/10/locale:43, from /usr/i686-linux-gnu/include/c++/10/iomanip:43, from ./pwiz/data/misc/SampleDatum.hpp:30, from pwiz/analysis/frequency/ParametrizedFunction.hpp:29, from pwiz/analysis/frequency/ParameterEstimator.hpp:29, from pwiz/analysis/frequency/ParameterEstimator.cpp:24: /usr/i686-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ pwiz/analysis/frequency/ParameterEstimator.cpp: In static member function ‘static std::auto_ptr pwiz::frequency::ParameterEstimator::create(const Function&, const Data&, const Parameters&)’: pwiz/analysis/frequency/ParameterEstimator.cpp:69:12: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 69 | return auto_ptr(new ParameterEstimatorImpl(function, data, initialEstimate)); | ^~~~~~~~ In file included from /usr/i686-linux-gnu/include/c++/10/bits/locale_conv.h:41, from /usr/i686-linux-gnu/include/c++/10/locale:43, from /usr/i686-linux-gnu/include/c++/10/iomanip:43, from ./pwiz/data/misc/SampleDatum.hpp:30, from pwiz/analysis/frequency/ParametrizedFunction.hpp:29, from pwiz/analysis/frequency/ParameterEstimator.hpp:29, from pwiz/analysis/frequency/ParameterEstimator.cpp:24: /usr/i686-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ libtool: compile: i686-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/frequency/ParameterEstimator.lo -MD -MP -MF pwiz/analysis/frequency/.deps/ParameterEstimator.Tpo -c pwiz/analysis/frequency/ParameterEstimator.cpp -o pwiz/analysis/frequency/ParameterEstimator.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/frequency/FrequencyEstimatorSimple.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/frequency/FrequencyEstimatorSimple.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/frequency/FrequencyEstimatorSimple.lo pwiz/analysis/frequency/FrequencyEstimatorSimple.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: i686-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/frequency/FrequencyEstimatorSimple.lo -MD -MP -MF pwiz/analysis/frequency/.deps/FrequencyEstimatorSimple.Tpo -c pwiz/analysis/frequency/FrequencyEstimatorSimple.cpp -fPIC -DPIC -o pwiz/analysis/frequency/.libs/FrequencyEstimatorSimple.o In file included from pwiz/analysis/frequency/FrequencyEstimator.hpp:29, from pwiz/analysis/frequency/FrequencyEstimatorSimple.hpp:29, from pwiz/analysis/frequency/FrequencyEstimatorSimple.cpp:26: ./pwiz/data/misc/FrequencyData.hpp:157:10: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 157 | std::auto_ptr impl_; | ^~~~~~~~ In file included from /usr/i686-linux-gnu/include/c++/10/bits/locale_conv.h:41, from /usr/i686-linux-gnu/include/c++/10/locale:43, from /usr/i686-linux-gnu/include/c++/10/iomanip:43, from ./pwiz/data/misc/SampleDatum.hpp:30, from ./pwiz/data/misc/FrequencyData.hpp:29, from pwiz/analysis/frequency/FrequencyEstimator.hpp:29, from pwiz/analysis/frequency/FrequencyEstimatorSimple.hpp:29, from pwiz/analysis/frequency/FrequencyEstimatorSimple.cpp:26: /usr/i686-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from pwiz/analysis/frequency/FrequencyEstimatorSimple.cpp:26: pwiz/analysis/frequency/FrequencyEstimatorSimple.hpp:45:17: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 45 | static std::auto_ptr create(Type type = Parabola, | ^~~~~~~~ In file included from /usr/i686-linux-gnu/include/c++/10/bits/locale_conv.h:41, from /usr/i686-linux-gnu/include/c++/10/locale:43, from /usr/i686-linux-gnu/include/c++/10/iomanip:43, from ./pwiz/data/misc/SampleDatum.hpp:30, from ./pwiz/data/misc/FrequencyData.hpp:29, from pwiz/analysis/frequency/FrequencyEstimator.hpp:29, from pwiz/analysis/frequency/FrequencyEstimatorSimple.hpp:29, from pwiz/analysis/frequency/FrequencyEstimatorSimple.cpp:26: /usr/i686-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ pwiz/analysis/frequency/FrequencyEstimatorSimple.cpp:63:15: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 63 | PWIZ_API_DECL auto_ptr FrequencyEstimatorSimple::create(Type type, | ^~~~~~~~ In file included from /usr/i686-linux-gnu/include/c++/10/bits/locale_conv.h:41, from /usr/i686-linux-gnu/include/c++/10/locale:43, from /usr/i686-linux-gnu/include/c++/10/iomanip:43, from ./pwiz/data/misc/SampleDatum.hpp:30, from ./pwiz/data/misc/FrequencyData.hpp:29, from pwiz/analysis/frequency/FrequencyEstimator.hpp:29, from pwiz/analysis/frequency/FrequencyEstimatorSimple.hpp:29, from pwiz/analysis/frequency/FrequencyEstimatorSimple.cpp:26: /usr/i686-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ pwiz/analysis/frequency/FrequencyEstimatorSimple.cpp: In static member function ‘static std::auto_ptr pwiz::frequency::FrequencyEstimatorSimple::create(pwiz::frequency::FrequencyEstimatorSimple::Type, unsigned int)’: pwiz/analysis/frequency/FrequencyEstimatorSimple.cpp:66:12: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 66 | return auto_ptr( | ^~~~~~~~ In file included from /usr/i686-linux-gnu/include/c++/10/bits/locale_conv.h:41, from /usr/i686-linux-gnu/include/c++/10/locale:43, from /usr/i686-linux-gnu/include/c++/10/iomanip:43, from ./pwiz/data/misc/SampleDatum.hpp:30, from ./pwiz/data/misc/FrequencyData.hpp:29, from pwiz/analysis/frequency/FrequencyEstimator.hpp:29, from pwiz/analysis/frequency/FrequencyEstimatorSimple.hpp:29, from pwiz/analysis/frequency/FrequencyEstimatorSimple.cpp:26: /usr/i686-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ libtool: compile: i686-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/frequency/FrequencyEstimatorSimple.lo -MD -MP -MF pwiz/analysis/frequency/.deps/FrequencyEstimatorSimple.Tpo -c pwiz/analysis/frequency/FrequencyEstimatorSimple.cpp -o pwiz/analysis/frequency/FrequencyEstimatorSimple.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/chromatogram_processing/ChromatogramList_Filter.lo | sed 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/<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/passive/PepXMLCat.lo -MD -MP -MF pwiz/analysis/passive/.deps/PepXMLCat.Tpo -c pwiz/analysis/passive/PepXMLCat.cpp -fPIC -DPIC -o pwiz/analysis/passive/.libs/PepXMLCat.o libtool: compile: i686-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 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-DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/passive/PepXMLCat.lo -MD -MP -MF pwiz/analysis/passive/.deps/PepXMLCat.Tpo -c pwiz/analysis/passive/PepXMLCat.cpp -o pwiz/analysis/passive/PepXMLCat.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/peakdetect/FeatureDetectorPeakel.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 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-DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/peakdetect/FeatureDetectorPeakel.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/peakdetect/FeatureDetectorPeakel.lo pwiz/analysis/peakdetect/FeatureDetectorPeakel.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: i686-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/peakdetect/FeatureDetectorPeakel.lo -MD -MP -MF pwiz/analysis/peakdetect/.deps/FeatureDetectorPeakel.Tpo -c pwiz/analysis/peakdetect/FeatureDetectorPeakel.cpp -fPIC -DPIC -o pwiz/analysis/peakdetect/.libs/FeatureDetectorPeakel.o In file included from pwiz/analysis/peakdetect/FeatureDetector.hpp:27, from pwiz/analysis/peakdetect/FeatureDetectorPeakel.hpp:28, from pwiz/analysis/peakdetect/FeatureDetectorPeakel.cpp:25: pwiz/analysis/peakdetect/MZRTField.hpp: In instantiation of ‘struct pwiz::analysis::MZRTField’: ./pwiz/analysis/passive/MSDataAnalyzer.hpp:211:26: required from here pwiz/analysis/peakdetect/MZRTField.hpp:94:8: warning: ‘pwiz::analysis::MZRTField’ has a base ‘std::set, pwiz::analysis::{anonymous}::LessThan_MZRT, std::allocator > >’ whose type uses the anonymous namespace [-Wsubobject-linkage] 94 | struct MZRTField : public std::set< boost::shared_ptr, LessThan_MZRT > | ^~~~~~~~~ pwiz/analysis/peakdetect/MZRTField.hpp: In instantiation of ‘struct pwiz::analysis::MZRTField’: ./pwiz/analysis/passive/MSDataAnalyzer.hpp:211:26: required from here pwiz/analysis/peakdetect/MZRTField.hpp:94:8: warning: ‘pwiz::analysis::MZRTField’ has a base ‘std::set, pwiz::analysis::{anonymous}::LessThan_MZRT, std::allocator > >’ whose type uses the anonymous namespace [-Wsubobject-linkage] libtool: compile: i686-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" 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-DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/peakdetect/FeatureDetectorPeakel.lo -MD -MP -MF pwiz/analysis/peakdetect/.deps/FeatureDetectorPeakel.Tpo -c pwiz/analysis/peakdetect/FeatureDetectorPeakel.cpp -o pwiz/analysis/peakdetect/FeatureDetectorPeakel.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/spectrum_processing/MS2Deisotoper.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 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-DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 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pwiz/analysis/spectrum_processing/MS2Deisotoper.lo -MD -MP -MF pwiz/analysis/spectrum_processing/.deps/MS2Deisotoper.Tpo -c pwiz/analysis/spectrum_processing/MS2Deisotoper.cpp -o pwiz/analysis/spectrum_processing/MS2Deisotoper.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/spectrum_processing/SpectrumList_MetadataFixer.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 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-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/identdata/examples.lo -MD -MP -MF pwiz/data/identdata/.deps/examples.Tpo -c pwiz/data/identdata/examples.cpp -o pwiz/data/identdata/examples.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 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-DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.lo pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: i686-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.lo -MD -MP -MF pwiz/analysis/frequency/.deps/FrequencyEstimatorPhysicalModel.Tpo -c pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.cpp -fPIC -DPIC -o pwiz/analysis/frequency/.libs/FrequencyEstimatorPhysicalModel.o In file included from pwiz/analysis/frequency/FrequencyEstimator.hpp:29, from pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.hpp:29, from pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.cpp:26: ./pwiz/data/misc/FrequencyData.hpp:157:10: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 157 | std::auto_ptr impl_; | ^~~~~~~~ In file included from /usr/i686-linux-gnu/include/c++/10/bits/locale_conv.h:41, from /usr/i686-linux-gnu/include/c++/10/locale:43, from /usr/i686-linux-gnu/include/c++/10/iomanip:43, from ./pwiz/data/misc/SampleDatum.hpp:30, from ./pwiz/data/misc/FrequencyData.hpp:29, from pwiz/analysis/frequency/FrequencyEstimator.hpp:29, from pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.hpp:29, from pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.cpp:26: /usr/i686-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.cpp:26: pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.hpp:53:17: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 53 | static std::auto_ptr create(const Config& config); | ^~~~~~~~ In file included from /usr/i686-linux-gnu/include/c++/10/bits/locale_conv.h:41, from /usr/i686-linux-gnu/include/c++/10/locale:43, from /usr/i686-linux-gnu/include/c++/10/iomanip:43, from ./pwiz/data/misc/SampleDatum.hpp:30, from ./pwiz/data/misc/FrequencyData.hpp:29, from pwiz/analysis/frequency/FrequencyEstimator.hpp:29, from pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.hpp:29, from pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.cpp:26: /usr/i686-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.cpp:27: pwiz/analysis/frequency/TruncatedLorentzianEstimator.hpp:43:17: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 43 | static std::auto_ptr create(); | ^~~~~~~~ In file included from /usr/i686-linux-gnu/include/c++/10/bits/locale_conv.h:41, from /usr/i686-linux-gnu/include/c++/10/locale:43, from /usr/i686-linux-gnu/include/c++/10/iomanip:43, from ./pwiz/data/misc/SampleDatum.hpp:30, from ./pwiz/data/misc/FrequencyData.hpp:29, from pwiz/analysis/frequency/FrequencyEstimator.hpp:29, from pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.hpp:29, from pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.cpp:26: /usr/i686-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.cpp:60:1: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 60 | auto_ptr | ^~~~~~~~ In file included from /usr/i686-linux-gnu/include/c++/10/bits/locale_conv.h:41, from /usr/i686-linux-gnu/include/c++/10/locale:43, from /usr/i686-linux-gnu/include/c++/10/iomanip:43, from ./pwiz/data/misc/SampleDatum.hpp:30, from ./pwiz/data/misc/FrequencyData.hpp:29, from pwiz/analysis/frequency/FrequencyEstimator.hpp:29, from pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.hpp:29, from pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.cpp:26: /usr/i686-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.cpp: In static member function ‘static std::auto_ptr pwiz::frequency::FrequencyEstimatorPhysicalModel::create(const pwiz::frequency::FrequencyEstimatorPhysicalModel::Config&)’: pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.cpp:63:12: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 63 | return auto_ptr( | ^~~~~~~~ In file included from /usr/i686-linux-gnu/include/c++/10/bits/locale_conv.h:41, from /usr/i686-linux-gnu/include/c++/10/locale:43, from /usr/i686-linux-gnu/include/c++/10/iomanip:43, from ./pwiz/data/misc/SampleDatum.hpp:30, from ./pwiz/data/misc/FrequencyData.hpp:29, from pwiz/analysis/frequency/FrequencyEstimator.hpp:29, from pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.hpp:29, from pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.cpp:26: /usr/i686-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.cpp: In member function ‘virtual pwiz::data::peakdata::Peak FrequencyEstimatorPhysicalModelImpl::estimate(const FrequencyData&, const Peak&) const’: pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.cpp:100:5: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 100 | auto_ptr estimator = TruncatedLorentzianEstimator::create(); | ^~~~~~~~ In file included from /usr/i686-linux-gnu/include/c++/10/bits/locale_conv.h:41, from /usr/i686-linux-gnu/include/c++/10/locale:43, from /usr/i686-linux-gnu/include/c++/10/iomanip:43, from ./pwiz/data/misc/SampleDatum.hpp:30, from ./pwiz/data/misc/FrequencyData.hpp:29, from pwiz/analysis/frequency/FrequencyEstimator.hpp:29, from pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.hpp:29, from pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.cpp:26: /usr/i686-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ libtool: compile: i686-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.lo -MD -MP -MF pwiz/analysis/frequency/.deps/FrequencyEstimatorPhysicalModel.Tpo -c pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.cpp -o pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.o >/dev/null 2>&1 depbase=`echo pwiz/utility/misc/IntegerSet.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/utility/misc/IntegerSet.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/utility/misc/IntegerSet.lo pwiz/utility/misc/IntegerSet.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: i686-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -D