sbuild (Debian sbuild) 0.78.1 (09 February 2019) on mjolnir.einval.org +==============================================================================+ | libpwizlite 3.0.4-1 (amd64) Fri, 29 Jul 2022 04:49:02 +0000 | +==============================================================================+ Package: libpwizlite Version: 3.0.4-1 Source Version: 3.0.4-1 Distribution: unstable Machine Architecture: arm64 Host Architecture: amd64 Build Architecture: arm64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/crossqa-sid-430a043b-0267-4302-8408-98bd69374f46' with '<>' I: NOTICE: Log filtering will replace 'build/libpwizlite-qddqPR/resolver-UyX8Cp' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://mirror.einval.org/debian sid InRelease [192 kB] Ign:2 http://mirror.einval.org/debian sid/main Sources.diff/Index Ign:3 http://mirror.einval.org/debian sid/main arm64 Packages.diff/Index Get:2 http://mirror.einval.org/debian sid/main Sources.diff/Index [63.6 kB] Ign:2 http://mirror.einval.org/debian sid/main Sources.diff/Index Ign:3 http://mirror.einval.org/debian sid/main arm64 Packages.diff/Index Get:4 http://mirror.einval.org/debian sid/main amd64 Packages [9270 kB] Get:5 http://mirror.einval.org/debian sid/main Sources [9833 kB] Get:6 http://mirror.einval.org/debian sid/main arm64 Packages [9119 kB] Fetched 28.4 MB in 7s (3816 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: bsdutils libblkid1 libmount1 libsmartcols1 libuuid1 mount util-linux util-linux-extra 8 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 2373 kB of archives. After this operation, 0 B of additional disk space will be used. Get:1 http://mirror.einval.org/debian sid/main arm64 bsdutils arm64 1:2.38-6 [152 kB] Get:2 http://mirror.einval.org/debian sid/main arm64 libsmartcols1 arm64 2.38-6 [161 kB] Get:3 http://mirror.einval.org/debian sid/main arm64 util-linux-extra arm64 2.38-6 [169 kB] Get:4 http://mirror.einval.org/debian sid/main arm64 util-linux arm64 2.38-6 [1197 kB] Get:5 http://mirror.einval.org/debian sid/main arm64 mount arm64 2.38-6 [192 kB] Get:6 http://mirror.einval.org/debian sid/main arm64 libblkid1 arm64 2.38-6 [200 kB] Get:7 http://mirror.einval.org/debian sid/main arm64 libmount1 arm64 2.38-6 [216 kB] Get:8 http://mirror.einval.org/debian sid/main arm64 libuuid1 arm64 2.38-6 [85.6 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 2373 kB in 0s (38.5 MB/s) (Reading database ... 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Processing triggers for libc-bin (2.33-8) ... +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'libpwizlite' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/debichem-team/libpwizlite.git Please use: git clone https://salsa.debian.org/debichem-team/libpwizlite.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 757 kB of source archives. Get:1 http://mirror.einval.org/debian sid/main libpwizlite 3.0.4-1 (dsc) [2218 B] Get:2 http://mirror.einval.org/debian sid/main libpwizlite 3.0.4-1 (tar) [746 kB] Get:3 http://mirror.einval.org/debian sid/main libpwizlite 3.0.4-1 (diff) [7904 B] Fetched 757 kB in 0s (9120 kB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/libpwizlite-qddqPR/libpwizlite-3.0.4' with '<>' I: NOTICE: Log filtering will replace 'build/libpwizlite-qddqPR' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), cmake (>= 3.12), dh-exec (>= 0.3), dpkg-dev (>= 1.18.25), libboost-dev, libboost-thread-dev, libboost-filesystem-dev, libboost-iostreams-dev, libboost-chrono-dev, zlib1g-dev, python3-docutils, libc-dev, libstdc++-dev, build-essential:arm64, fakeroot:arm64, crossbuild-essential-amd64:arm64, libc-dev:amd64, libstdc++-dev:amd64 Filtered Build-Depends: debhelper-compat (= 13), cmake (>= 3.12), dh-exec (>= 0.3), dpkg-dev (>= 1.18.25), libboost-dev, libboost-thread-dev, libboost-filesystem-dev, libboost-iostreams-dev, libboost-chrono-dev, zlib1g-dev, python3-docutils, libc-dev, libstdc++-dev, build-essential:arm64, fakeroot:arm64, crossbuild-essential-amd64:arm64, libc-dev:amd64, libstdc++-dev:amd64 dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [489 B] Get:5 copy:/<>/apt_archive ./ Packages [580 B] Fetched 2026 B in 0s (48.5 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-x86-64-linux-gnu bsdextrautils cmake cmake-data cpp-12-x86-64-linux-gnu cpp-x86-64-linux-gnu cross-config crossbuild-essential-amd64 debhelper dh-autoreconf dh-elpa-helper dh-exec dh-strip-nondeterminism docutils-common dpkg-cross dwz emacsen-common file g++-12-x86-64-linux-gnu g++-x86-64-linux-gnu gcc-11-base:amd64 gcc-12-base:amd64 gcc-12-cross-base gcc-12-x86-64-linux-gnu gcc-12-x86-64-linux-gnu-base gcc-x86-64-linux-gnu gettext gettext-base groff-base icu-devtools intltool-debian libarchive-zip-perl libarchive13 libasan6:amd64 libasan8-amd64-cross libatomic1:amd64 libatomic1-amd64-cross libboost-atomic1.74-dev:amd64 libboost-atomic1.74.0:amd64 libboost-chrono-dev:amd64 libboost-chrono1.74-dev:amd64 libboost-chrono1.74.0:amd64 libboost-date-time1.74-dev:amd64 libboost-date-time1.74.0:amd64 libboost-dev:amd64 libboost-filesystem-dev:amd64 libboost-filesystem1.74-dev:amd64 libboost-filesystem1.74.0:amd64 libboost-iostreams-dev:amd64 libboost-iostreams1.74-dev:amd64 libboost-iostreams1.74.0:amd64 libboost-regex1.74-dev:amd64 libboost-regex1.74.0:amd64 libboost-serialization1.74-dev:amd64 libboost-serialization1.74.0:amd64 libboost-system1.74-dev:amd64 libboost-system1.74.0:amd64 libboost-thread-dev:amd64 libboost-thread1.74-dev:amd64 libboost-thread1.74.0:amd64 libboost1.74-dev:amd64 libbrotli1 libbz2-1.0:amd64 libc6:amd64 libc6-amd64-cross libc6-dev:amd64 libc6-dev-amd64-cross libcom-err2:amd64 libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev:amd64 libcrypt1:amd64 libcurl4 libdebhelper-perl libdebian-dpkgcross-perl libelf1 libexpat1 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-11-dev:amd64 libgcc-12-dev-amd64-cross libgcc-s1:amd64 libgcc-s1-amd64-cross libgomp1:amd64 libgomp1-amd64-cross libgssapi-krb5-2:amd64 libicu-dev:amd64 libicu71 libicu71:amd64 libio-string-perl libitm1:amd64 libitm1-amd64-cross libjsoncpp25 libk5crypto3:amd64 libkeyutils1:amd64 libkrb5-3:amd64 libkrb5support0:amd64 libldap-2.5-0 liblocale-gettext-perl liblsan0:amd64 liblsan0-amd64-cross liblzma5:amd64 libmagic-mgc libmagic1 libmpdec3 libncurses6 libncursesw6 libnghttp2-14 libnsl-dev:amd64 libnsl2:amd64 libpipeline1 libprocps8 libpsl5 libpython3-stdlib libpython3.10-minimal libpython3.10-stdlib libquadmath0:amd64 libquadmath0-amd64-cross libreadline8 librhash0 librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libsqlite3-0 libssh2-1 libssl3:amd64 libstdc++-11-dev:amd64 libstdc++-12-dev-amd64-cross libstdc++6:amd64 libstdc++6-amd64-cross libsub-override-perl libtirpc-dev:amd64 libtirpc3:amd64 libtool libtsan0:amd64 libtsan2-amd64-cross libubsan1:amd64 libubsan1-amd64-cross libuchardet0 libuv1 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl libzstd1:amd64 linux-libc-dev:amd64 linux-libc-dev-amd64-cross m4 man-db media-types po-debconf procps python3 python3-docutils python3-minimal python3-roman python3.10 python3.10-minimal readline-common sensible-utils ucf xml-core zlib1g:amd64 zlib1g-dev:amd64 Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc cmake-doc ninja-build cmake-format gcc-12-locales cpp-doc dh-make binutils-multiarch g++-12-multilib-x86-64-linux-gnu gcc-12-doc gcc-12-multilib-x86-64-linux-gnu manpages-dev flex bison gdb-x86-64-linux-gnu gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff lrzip libboost-doc:amd64 libboost1.74-doc:amd64 libboost-container1.74-dev:amd64 libboost-context1.74-dev:amd64 libboost-contract1.74-dev:amd64 libboost-coroutine1.74-dev:amd64 libboost-exception1.74-dev:amd64 libboost-fiber1.74-dev:amd64 libboost-graph1.74-dev:amd64 libboost-graph-parallel1.74-dev:amd64 libboost-locale1.74-dev:amd64 libboost-log1.74-dev:amd64 libboost-math1.74-dev:amd64 libboost-mpi1.74-dev:amd64 libboost-mpi-python1.74-dev:amd64 libboost-numpy1.74-dev:amd64 libboost-program-options1.74-dev:amd64 libboost-python1.74-dev:amd64 libboost-random1.74-dev:amd64 libboost-stacktrace1.74-dev:amd64 libboost-test1.74-dev:amd64 libboost-timer1.74-dev:amd64 libboost-type-erasure1.74-dev:amd64 libboost-wave1.74-dev:amd64 libboost1.74-tools-dev:amd64 libmpfrc++-dev:amd64 libntl-dev:amd64 libboost-nowide1.74-dev:amd64 glibc-doc:amd64 libc-l10n:amd64 locales:amd64 libnss-nis:amd64 libnss-nisplus:amd64 manpages-dev:amd64 krb5-doc:amd64 krb5-user:amd64 icu-doc:amd64 libstdc++-11-doc:amd64 libtool-doc gfortran | fortran95-compiler gcj-jdk libyaml-shell-perl m4-doc apparmor less www-browser libmail-box-perl python3-doc python3-tk python3-venv docutils-doc fonts-linuxlibertine | ttf-linux-libertine texlive-lang-french texlive-latex-base texlive-latex-recommended python3.10-venv python3.10-doc binfmt-support readline-doc Recommended packages: curl | wget | lynx libidn2-0:amd64 ca-certificates libarchive-cpio-perl krb5-locales:amd64 libldap-common libgpm2 publicsuffix libsasl2-modules libltdl-dev libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl libmail-sendmail-perl psmisc libpaper-utils python3-pil python3-pygments The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-x86-64-linux-gnu bsdextrautils cmake cmake-data cpp-12-x86-64-linux-gnu cpp-x86-64-linux-gnu cross-config crossbuild-essential-amd64 debhelper dh-autoreconf dh-elpa-helper dh-exec dh-strip-nondeterminism docutils-common dpkg-cross dwz emacsen-common file g++-12-x86-64-linux-gnu g++-x86-64-linux-gnu gcc-11-base:amd64 gcc-12-base:amd64 gcc-12-cross-base gcc-12-x86-64-linux-gnu gcc-12-x86-64-linux-gnu-base gcc-x86-64-linux-gnu gettext gettext-base groff-base icu-devtools intltool-debian libarchive-zip-perl libarchive13 libasan6:amd64 libasan8-amd64-cross libatomic1:amd64 libatomic1-amd64-cross libboost-atomic1.74-dev:amd64 libboost-atomic1.74.0:amd64 libboost-chrono-dev:amd64 libboost-chrono1.74-dev:amd64 libboost-chrono1.74.0:amd64 libboost-date-time1.74-dev:amd64 libboost-date-time1.74.0:amd64 libboost-dev:amd64 libboost-filesystem-dev:amd64 libboost-filesystem1.74-dev:amd64 libboost-filesystem1.74.0:amd64 libboost-iostreams-dev:amd64 libboost-iostreams1.74-dev:amd64 libboost-iostreams1.74.0:amd64 libboost-regex1.74-dev:amd64 libboost-regex1.74.0:amd64 libboost-serialization1.74-dev:amd64 libboost-serialization1.74.0:amd64 libboost-system1.74-dev:amd64 libboost-system1.74.0:amd64 libboost-thread-dev:amd64 libboost-thread1.74-dev:amd64 libboost-thread1.74.0:amd64 libboost1.74-dev:amd64 libbrotli1 libbz2-1.0:amd64 libc6:amd64 libc6-amd64-cross libc6-dev:amd64 libc6-dev-amd64-cross libcom-err2:amd64 libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev:amd64 libcrypt1:amd64 libcurl4 libdebhelper-perl libdebian-dpkgcross-perl libelf1 libexpat1 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-11-dev:amd64 libgcc-12-dev-amd64-cross libgcc-s1:amd64 libgcc-s1-amd64-cross libgomp1:amd64 libgomp1-amd64-cross libgssapi-krb5-2:amd64 libicu-dev:amd64 libicu71 libicu71:amd64 libio-string-perl libitm1:amd64 libitm1-amd64-cross libjsoncpp25 libk5crypto3:amd64 libkeyutils1:amd64 libkrb5-3:amd64 libkrb5support0:amd64 libldap-2.5-0 liblocale-gettext-perl liblsan0:amd64 liblsan0-amd64-cross liblzma5:amd64 libmagic-mgc libmagic1 libmpdec3 libncurses6 libncursesw6 libnghttp2-14 libnsl-dev:amd64 libnsl2:amd64 libpipeline1 libprocps8 libpsl5 libpython3-stdlib libpython3.10-minimal libpython3.10-stdlib libquadmath0:amd64 libquadmath0-amd64-cross libreadline8 librhash0 librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libsqlite3-0 libssh2-1 libssl3:amd64 libstdc++-11-dev:amd64 libstdc++-12-dev-amd64-cross libstdc++6:amd64 libstdc++6-amd64-cross libsub-override-perl libtirpc-dev:amd64 libtirpc3:amd64 libtool libtsan0:amd64 libtsan2-amd64-cross libubsan1:amd64 libubsan1-amd64-cross libuchardet0 libuv1 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl libzstd1:amd64 linux-libc-dev:amd64 linux-libc-dev-amd64-cross m4 man-db media-types po-debconf procps python3 python3-docutils python3-minimal python3-roman python3.10 python3.10-minimal readline-common sbuild-build-depends-main-dummy:amd64 sensible-utils ucf xml-core zlib1g:amd64 zlib1g-dev:amd64 0 upgraded, 174 newly installed, 0 to remove and 0 not upgraded. Need to get 292 MB of archives. After this operation, 1241 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [1008 B] Get:2 http://mirror.einval.org/debian sid/main arm64 liblocale-gettext-perl arm64 1.07-4+b2 [18.9 kB] Get:3 http://mirror.einval.org/debian sid/main arm64 libpython3.10-minimal arm64 3.10.5-1 [823 kB] Get:4 http://mirror.einval.org/debian sid/main arm64 libexpat1 arm64 2.4.8-1 [94.6 kB] Get:5 http://mirror.einval.org/debian sid/main arm64 python3.10-minimal arm64 3.10.5-1 [1951 kB] Get:6 http://mirror.einval.org/debian sid/main arm64 python3-minimal arm64 3.10.5-3 [38.6 kB] Get:7 http://mirror.einval.org/debian sid/main arm64 media-types all 8.0.0 [33.4 kB] Get:8 http://mirror.einval.org/debian sid/main arm64 libmpdec3 arm64 2.5.1-2 [84.4 kB] Get:9 http://mirror.einval.org/debian sid/main arm64 libncursesw6 arm64 6.3+20220423-2 [121 kB] Get:10 http://mirror.einval.org/debian sid/main arm64 readline-common all 8.1.2-1.2 [73.9 kB] Get:11 http://mirror.einval.org/debian sid/main arm64 libreadline8 arm64 8.1.2-1.2 [160 kB] Get:12 http://mirror.einval.org/debian sid/main arm64 libsqlite3-0 arm64 3.39.2-1 [786 kB] Get:13 http://mirror.einval.org/debian sid/main arm64 libpython3.10-stdlib arm64 3.10.5-1 [1679 kB] Get:14 http://mirror.einval.org/debian sid/main arm64 python3.10 arm64 3.10.5-1 [541 kB] Get:15 http://mirror.einval.org/debian sid/main arm64 libpython3-stdlib arm64 3.10.5-3 [21.7 kB] Get:16 http://mirror.einval.org/debian sid/main arm64 python3 arm64 3.10.5-3 [38.2 kB] Get:17 http://mirror.einval.org/debian sid/main arm64 libncurses6 arm64 6.3+20220423-2 [92.9 kB] Get:18 http://mirror.einval.org/debian sid/main arm64 libprocps8 arm64 2:3.3.17-7+b1 [62.5 kB] Get:19 http://mirror.einval.org/debian sid/main arm64 procps arm64 2:3.3.17-7+b1 [497 kB] Get:20 http://mirror.einval.org/debian sid/main arm64 sensible-utils all 0.0.17 [21.5 kB] Get:21 http://mirror.einval.org/debian sid/main arm64 libmagic-mgc arm64 1:5.41-4 [295 kB] Get:22 http://mirror.einval.org/debian sid/main arm64 libmagic1 arm64 1:5.41-4 [124 kB] Get:23 http://mirror.einval.org/debian sid/main arm64 file arm64 1:5.41-4 [66.9 kB] Get:24 http://mirror.einval.org/debian sid/main arm64 gettext-base arm64 0.21-6 [173 kB] Get:25 http://mirror.einval.org/debian sid/main arm64 libuchardet0 arm64 0.0.7-1 [67.9 kB] Get:26 http://mirror.einval.org/debian sid/main arm64 groff-base arm64 1.22.4-8 [882 kB] Get:27 http://mirror.einval.org/debian sid/main arm64 bsdextrautils arm64 2.38-6 [145 kB] Get:28 http://mirror.einval.org/debian sid/main arm64 libpipeline1 arm64 1.5.6-1 [36.8 kB] Get:29 http://mirror.einval.org/debian sid/main arm64 man-db arm64 2.10.2-1 [1392 kB] Get:30 http://mirror.einval.org/debian sid/main arm64 ucf all 3.0043 [74.0 kB] Get:31 http://mirror.einval.org/debian sid/main arm64 libsigsegv2 arm64 2.14-1 [37.0 kB] Get:32 http://mirror.einval.org/debian sid/main arm64 m4 arm64 1.4.18-5 [199 kB] Get:33 http://mirror.einval.org/debian sid/main arm64 autoconf all 2.71-2 [343 kB] Get:34 http://mirror.einval.org/debian sid/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get:35 http://mirror.einval.org/debian sid/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get:36 http://mirror.einval.org/debian sid/main arm64 autopoint all 0.21-6 [510 kB] Get:37 http://mirror.einval.org/debian sid/main arm64 libicu71 arm64 71.1-3 [9046 kB] Get:38 http://mirror.einval.org/debian sid/main arm64 libxml2 arm64 2.9.14+dfsg-1+b1 [640 kB] Get:39 http://mirror.einval.org/debian sid/main arm64 libarchive13 arm64 3.6.0-1 [327 kB] Get:40 http://mirror.einval.org/debian sid/main arm64 libbrotli1 arm64 1.0.9-2+b4 [270 kB] Get:41 http://mirror.einval.org/debian sid/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg-6 [38.7 kB] Get:42 http://mirror.einval.org/debian sid/main arm64 libsasl2-2 arm64 2.1.28+dfsg-6 [76.5 kB] Get:43 http://mirror.einval.org/debian sid/main arm64 libldap-2.5-0 arm64 2.5.12+dfsg-2 [215 kB] Get:44 http://mirror.einval.org/debian sid/main arm64 libnghttp2-14 arm64 1.48.0-1 [79.5 kB] Get:45 http://mirror.einval.org/debian sid/main arm64 libpsl5 arm64 0.21.0-1.2 [57.1 kB] Get:46 http://mirror.einval.org/debian sid/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b2 [59.4 kB] Get:47 http://mirror.einval.org/debian sid/main arm64 libssh2-1 arm64 1.10.0-3+b1 [172 kB] Get:48 http://mirror.einval.org/debian sid/main arm64 libcurl4 arm64 7.84.0-2 [338 kB] Get:49 http://mirror.einval.org/debian sid/main arm64 libjsoncpp25 arm64 1.9.5-4 [72.3 kB] Get:50 http://mirror.einval.org/debian sid/main arm64 librhash0 arm64 1.4.3-3 [131 kB] Get:51 http://mirror.einval.org/debian sid/main arm64 libuv1 arm64 1.44.2-1 [133 kB] Get:52 http://mirror.einval.org/debian sid/main arm64 dh-elpa-helper all 2.0.10 [11.3 kB] Get:53 http://mirror.einval.org/debian sid/main arm64 emacsen-common all 3.0.4 [19.3 kB] Get:54 http://mirror.einval.org/debian sid/main arm64 cmake-data all 3.23.2-1 [1939 kB] Get:55 http://mirror.einval.org/debian sid/main arm64 cmake arm64 3.23.2-1 [5572 kB] Get:56 http://mirror.einval.org/debian sid/main arm64 gcc-12-x86-64-linux-gnu-base arm64 12.1.0-7cross1 [208 kB] Get:57 http://mirror.einval.org/debian sid/main arm64 cpp-12-x86-64-linux-gnu arm64 12.1.0-7cross1 [54.4 MB] Get:58 http://mirror.einval.org/debian sid/main arm64 cpp-x86-64-linux-gnu arm64 4:12.1.0-3 [17.1 kB] Get:59 http://mirror.einval.org/debian sid/main arm64 cross-config all 2.6.18+nmu2 [31.7 kB] Get:60 http://mirror.einval.org/debian sid/main arm64 binutils-x86-64-linux-gnu arm64 2.38.90.20220713-2 [5493 kB] Get:61 http://mirror.einval.org/debian sid/main arm64 gcc-12-cross-base all 12.1.0-7cross1 [203 kB] Get:62 http://mirror.einval.org/debian sid/main arm64 libgcc-s1-amd64-cross all 12.1.0-7cross1 [50.3 kB] Get:63 http://mirror.einval.org/debian sid/main arm64 libgomp1-amd64-cross all 12.1.0-7cross1 [113 kB] Get:64 http://mirror.einval.org/debian sid/main arm64 libitm1-amd64-cross all 12.1.0-7cross1 [25.5 kB] Get:65 http://mirror.einval.org/debian sid/main arm64 libatomic1-amd64-cross all 12.1.0-7cross1 [9112 B] Get:66 http://mirror.einval.org/debian sid/main arm64 libasan8-amd64-cross all 12.1.0-7cross1 [2194 kB] Get:67 http://mirror.einval.org/debian sid/main arm64 liblsan0-amd64-cross all 12.1.0-7cross1 [968 kB] Get:68 http://mirror.einval.org/debian sid/main arm64 libtsan2-amd64-cross all 12.1.0-7cross1 [2197 kB] Get:69 http://mirror.einval.org/debian sid/main arm64 libc6-amd64-cross all 2.33-1cross1 [1579 kB] Get:70 http://mirror.einval.org/debian sid/main arm64 libstdc++6-amd64-cross all 12.1.0-7cross1 [571 kB] Get:71 http://mirror.einval.org/debian sid/main arm64 libubsan1-amd64-cross all 12.1.0-7cross1 [882 kB] Get:72 http://mirror.einval.org/debian sid/main arm64 libquadmath0-amd64-cross all 12.1.0-7cross1 [144 kB] Get:73 http://mirror.einval.org/debian sid/main arm64 libgcc-12-dev-amd64-cross all 12.1.0-7cross1 [2437 kB] Get:74 http://mirror.einval.org/debian sid/main arm64 gcc-12-x86-64-linux-gnu arm64 12.1.0-7cross1 [61.8 MB] Get:75 http://mirror.einval.org/debian sid/main arm64 gcc-x86-64-linux-gnu arm64 4:12.1.0-3 [1456 B] Get:76 http://mirror.einval.org/debian sid/main arm64 linux-libc-dev-amd64-cross all 5.15.5-1cross1 [1576 kB] Get:77 http://mirror.einval.org/debian sid/main arm64 libc6-dev-amd64-cross all 2.33-1cross1 [2272 kB] Get:78 http://mirror.einval.org/debian sid/main arm64 libstdc++-12-dev-amd64-cross all 12.1.0-7cross1 [2026 kB] Get:79 http://mirror.einval.org/debian sid/main arm64 g++-12-x86-64-linux-gnu arm64 12.1.0-7cross1 [58.6 MB] Get:80 http://mirror.einval.org/debian sid/main arm64 g++-x86-64-linux-gnu arm64 4:12.1.0-3 [1176 B] Get:81 http://mirror.einval.org/debian sid/main arm64 libconfig-inifiles-perl all 3.000003-1 [52.1 kB] Get:82 http://mirror.einval.org/debian sid/main arm64 libio-string-perl all 1.08-3.1 [11.8 kB] Get:83 http://mirror.einval.org/debian sid/main arm64 libxml-namespacesupport-perl all 1.12-2 [15.1 kB] Get:84 http://mirror.einval.org/debian sid/main arm64 libxml-sax-base-perl all 1.09-2 [21.0 kB] Get:85 http://mirror.einval.org/debian sid/main arm64 libxml-sax-perl all 1.02+dfsg-3 [59.4 kB] Get:86 http://mirror.einval.org/debian sid/main arm64 libxml-libxml-perl arm64 2.0207+dfsg+really+2.0134-1 [326 kB] Get:87 http://mirror.einval.org/debian sid/main arm64 libxml-simple-perl all 2.25-1 [72.0 kB] Get:88 http://mirror.einval.org/debian sid/main arm64 libyaml-perl all 1.30-1 [67.7 kB] Get:89 http://mirror.einval.org/debian sid/main arm64 libconfig-auto-perl all 0.44-2 [19.2 kB] Get:90 http://mirror.einval.org/debian sid/main arm64 libfile-which-perl all 1.27-1 [17.3 kB] Get:91 http://mirror.einval.org/debian sid/main arm64 libfile-homedir-perl all 1.006-1 [43.8 kB] Get:92 http://mirror.einval.org/debian sid/main arm64 libdebian-dpkgcross-perl all 2.6.18+nmu2 [30.6 kB] Get:93 http://mirror.einval.org/debian sid/main arm64 dpkg-cross all 2.6.18+nmu2 [40.9 kB] Get:94 http://mirror.einval.org/debian sid/main arm64 crossbuild-essential-amd64 all 12.9 [6708 B] Get:95 http://mirror.einval.org/debian sid/main arm64 libdebhelper-perl all 13.8 [195 kB] Get:96 http://mirror.einval.org/debian sid/main arm64 libtool all 2.4.7-4 [526 kB] Get:97 http://mirror.einval.org/debian sid/main arm64 dh-autoreconf all 20 [17.1 kB] Get:98 http://mirror.einval.org/debian sid/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get:99 http://mirror.einval.org/debian sid/main arm64 libsub-override-perl all 0.09-3 [10.4 kB] Get:100 http://mirror.einval.org/debian sid/main arm64 libfile-stripnondeterminism-perl all 1.13.0-1 [26.6 kB] Get:101 http://mirror.einval.org/debian sid/main arm64 dh-strip-nondeterminism all 1.13.0-1 [15.8 kB] Get:102 http://mirror.einval.org/debian sid/main arm64 libelf1 arm64 0.187-1 [178 kB] Get:103 http://mirror.einval.org/debian sid/main arm64 dwz arm64 0.14-1 [90.0 kB] Get:104 http://mirror.einval.org/debian sid/main arm64 gettext arm64 0.21-6 [1260 kB] Get:105 http://mirror.einval.org/debian sid/main arm64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get:106 http://mirror.einval.org/debian sid/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get:107 http://mirror.einval.org/debian sid/main arm64 debhelper all 13.8 [1070 kB] Get:108 http://mirror.einval.org/debian sid/main arm64 dh-exec arm64 0.26 [27.8 kB] Get:109 http://mirror.einval.org/debian sid/main arm64 xml-core all 0.18+nmu1 [23.8 kB] Get:110 http://mirror.einval.org/debian sid/main arm64 docutils-common all 0.17.1+dfsg-2 [127 kB] Get:111 http://mirror.einval.org/debian sid/main amd64 gcc-11-base amd64 11.3.0-5 [209 kB] Get:112 http://mirror.einval.org/debian sid/main amd64 gcc-12-base amd64 12.1.0-7 [207 kB] Get:113 http://mirror.einval.org/debian sid/main arm64 icu-devtools arm64 71.1-3 [195 kB] Get:114 http://mirror.einval.org/debian sid/main amd64 libgcc-s1 amd64 12.1.0-7 [50.3 kB] Get:115 http://mirror.einval.org/debian sid/main amd64 libc6 amd64 2.33-8 [2845 kB] Get:116 http://mirror.einval.org/debian sid/main amd64 libasan6 amd64 11.3.0-5 [2050 kB] Get:117 http://mirror.einval.org/debian sid/main amd64 libatomic1 amd64 12.1.0-7 [9348 B] Get:118 http://mirror.einval.org/debian sid/main amd64 libgomp1 amd64 12.1.0-7 [116 kB] Get:119 http://mirror.einval.org/debian sid/main amd64 libitm1 amd64 12.1.0-7 [26.1 kB] Get:120 http://mirror.einval.org/debian sid/main amd64 liblsan0 amd64 12.1.0-7 [969 kB] Get:121 http://mirror.einval.org/debian sid/main amd64 libtsan0 amd64 11.3.0-5 [2017 kB] Get:122 http://mirror.einval.org/debian sid/main amd64 libstdc++6 amd64 12.1.0-7 [614 kB] Get:123 http://mirror.einval.org/debian sid/main amd64 libubsan1 amd64 12.1.0-7 [883 kB] Get:124 http://mirror.einval.org/debian sid/main amd64 libquadmath0 amd64 12.1.0-7 [145 kB] Get:125 http://mirror.einval.org/debian sid/main amd64 libgcc-11-dev amd64 11.3.0-5 [2361 kB] Get:126 http://mirror.einval.org/debian sid/main amd64 linux-libc-dev amd64 5.18.14-1 [1613 kB] Get:127 http://mirror.einval.org/debian sid/main amd64 libcrypt1 amd64 1:4.4.28-2 [89.3 kB] Get:128 http://mirror.einval.org/debian sid/main amd64 libcrypt-dev amd64 1:4.4.28-2 [118 kB] Get:129 http://mirror.einval.org/debian sid/main amd64 libcom-err2 amd64 1.46.5-2 [75.7 kB] Get:130 http://mirror.einval.org/debian sid/main amd64 libkrb5support0 amd64 1.20-1 [65.7 kB] Get:131 http://mirror.einval.org/debian sid/main amd64 libk5crypto3 amd64 1.20-1 [111 kB] Get:132 http://mirror.einval.org/debian sid/main amd64 libkeyutils1 amd64 1.6.3-1 [15.7 kB] Get:133 http://mirror.einval.org/debian sid/main amd64 libssl3 amd64 3.0.5-1 [2035 kB] Get:134 http://mirror.einval.org/debian sid/main amd64 libkrb5-3 amd64 1.20-1 [363 kB] Get:135 http://mirror.einval.org/debian sid/main amd64 libgssapi-krb5-2 amd64 1.20-1 [166 kB] Get:136 http://mirror.einval.org/debian sid/main amd64 libtirpc3 amd64 1.3.2-2 [83.9 kB] Get:137 http://mirror.einval.org/debian sid/main amd64 libnsl2 amd64 1.3.0-2 [39.5 kB] Get:138 http://mirror.einval.org/debian sid/main amd64 libtirpc-dev amd64 1.3.2-2 [190 kB] Get:139 http://mirror.einval.org/debian sid/main amd64 libnsl-dev amd64 1.3.0-2 [66.4 kB] Get:140 http://mirror.einval.org/debian sid/main amd64 libc6-dev amd64 2.33-8 [2294 kB] Get:141 http://mirror.einval.org/debian sid/main amd64 libstdc++-11-dev amd64 11.3.0-5 [1970 kB] Get:142 http://mirror.einval.org/debian sid/main amd64 libboost1.74-dev amd64 1.74.0-16.1+b1 [9541 kB] Get:143 http://mirror.einval.org/debian sid/main amd64 libboost-atomic1.74.0 amd64 1.74.0-16.1+b1 [245 kB] Get:144 http://mirror.einval.org/debian sid/main amd64 libboost-atomic1.74-dev amd64 1.74.0-16.1+b1 [246 kB] Get:145 http://mirror.einval.org/debian sid/main amd64 libboost-chrono1.74.0 amd64 1.74.0-16.1+b1 [253 kB] Get:146 http://mirror.einval.org/debian sid/main amd64 libboost-chrono1.74-dev amd64 1.74.0-16.1+b1 [260 kB] Get:147 http://mirror.einval.org/debian sid/main amd64 libboost-chrono-dev amd64 1.74.0.3 [4960 B] Get:148 http://mirror.einval.org/debian sid/main amd64 libboost-date-time1.74.0 amd64 1.74.0-16.1+b1 [242 kB] Get:149 http://mirror.einval.org/debian sid/main amd64 libboost-serialization1.74.0 amd64 1.74.0-16.1+b1 [342 kB] Get:150 http://mirror.einval.org/debian sid/main amd64 libboost-serialization1.74-dev amd64 1.74.0-16.1+b1 [383 kB] Get:151 http://mirror.einval.org/debian sid/main amd64 libboost-date-time1.74-dev amd64 1.74.0-16.1+b1 [251 kB] Get:152 http://mirror.einval.org/debian sid/main amd64 libboost-dev amd64 1.74.0.3 [4548 B] Get:153 http://mirror.einval.org/debian sid/main amd64 libboost-filesystem1.74.0 amd64 1.74.0-16.1+b1 [284 kB] Get:154 http://mirror.einval.org/debian sid/main amd64 libboost-system1.74.0 amd64 1.74.0-16.1+b1 [243 kB] Get:155 http://mirror.einval.org/debian sid/main amd64 libboost-system1.74-dev amd64 1.74.0-16.1+b1 [244 kB] Get:156 http://mirror.einval.org/debian sid/main amd64 libboost-filesystem1.74-dev amd64 1.74.0-16.1+b1 [305 kB] Get:157 http://mirror.einval.org/debian sid/main amd64 libboost-filesystem-dev amd64 1.74.0.3 [4368 B] Get:158 http://mirror.einval.org/debian sid/main amd64 libicu71 amd64 71.1-3 [9218 kB] Get:159 http://mirror.einval.org/debian sid/main amd64 libboost-regex1.74.0 amd64 1.74.0-16.1+b1 [511 kB] Get:160 http://mirror.einval.org/debian sid/main amd64 libicu-dev amd64 71.1-3 [10.2 MB] Get:161 http://mirror.einval.org/debian sid/main amd64 libboost-regex1.74-dev amd64 1.74.0-16.1+b1 [579 kB] Get:162 http://mirror.einval.org/debian sid/main amd64 libbz2-1.0 amd64 1.0.8-5 [46.2 kB] Get:163 http://mirror.einval.org/debian sid/main amd64 liblzma5 amd64 5.2.5-2.1 [168 kB] Get:164 http://mirror.einval.org/debian sid/main amd64 libzstd1 amd64 1.5.2+dfsg-1 [275 kB] Get:165 http://mirror.einval.org/debian sid/main amd64 zlib1g amd64 1:1.2.11.dfsg-4 [91.6 kB] Get:166 http://mirror.einval.org/debian sid/main amd64 libboost-iostreams1.74.0 amd64 1.74.0-16.1+b1 [265 kB] Get:167 http://mirror.einval.org/debian sid/main amd64 libboost-iostreams1.74-dev amd64 1.74.0-16.1+b1 [273 kB] Get:168 http://mirror.einval.org/debian sid/main amd64 libboost-iostreams-dev amd64 1.74.0.3 [4316 B] Get:169 http://mirror.einval.org/debian sid/main amd64 libboost-thread1.74.0 amd64 1.74.0-16.1+b1 [281 kB] Get:170 http://mirror.einval.org/debian sid/main amd64 libboost-thread1.74-dev amd64 1.74.0-16.1+b1 [291 kB] Get:171 http://mirror.einval.org/debian sid/main amd64 libboost-thread-dev amd64 1.74.0.3 [4356 B] Get:172 http://mirror.einval.org/debian sid/main arm64 python3-roman all 3.3-1 [10.7 kB] Get:173 http://mirror.einval.org/debian sid/main arm64 python3-docutils all 0.17.1+dfsg-2 [393 kB] Get:174 http://mirror.einval.org/debian sid/main amd64 zlib1g-dev amd64 1:1.2.11.dfsg-4 [191 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 292 MB in 4s (80.4 MB/s) Selecting previously unselected package liblocale-gettext-perl. (Reading database ... 12463 files and directories currently installed.) Preparing to unpack .../liblocale-gettext-perl_1.07-4+b2_arm64.deb ... Unpacking liblocale-gettext-perl (1.07-4+b2) ... Selecting previously unselected package libpython3.10-minimal:arm64. Preparing to unpack .../libpython3.10-minimal_3.10.5-1_arm64.deb ... Unpacking libpython3.10-minimal:arm64 (3.10.5-1) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../libexpat1_2.4.8-1_arm64.deb ... Unpacking libexpat1:arm64 (2.4.8-1) ... Selecting previously unselected package python3.10-minimal. Preparing to unpack .../python3.10-minimal_3.10.5-1_arm64.deb ... Unpacking python3.10-minimal (3.10.5-1) ... Setting up libpython3.10-minimal:arm64 (3.10.5-1) ... Setting up libexpat1:arm64 (2.4.8-1) ... Setting up python3.10-minimal (3.10.5-1) ... Selecting previously unselected package python3-minimal. (Reading database ... 12781 files and directories currently installed.) 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Setting up libboost-date-time1.74-dev:amd64 (1.74.0-16.1+b1) ... Setting up libboost-thread1.74-dev:amd64 (1.74.0-16.1+b1) ... Setting up libboost-thread-dev:amd64 (1.74.0.3) ... Setting up libboost-iostreams-dev:amd64 (1.74.0.3) ... Processing triggers for sgml-base (1.30) ... Processing triggers for libc-bin (2.33-8) ... Setting up docutils-common (0.17.1+dfsg-2) ... Processing triggers for sgml-base (1.30) ... Setting up python3-docutils (0.17.1+dfsg-2) ... Setting up sbuild-build-depends-main-dummy:amd64 (0.invalid.0) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 5.9.0-0.bpo.2-arm64 #1 SMP Debian 5.9.6-1~bpo10+1 (2020-11-19) arm64 (aarch64) Toolchain package versions: binutils_2.38.90.20220713-2 dpkg-dev_1.21.9 g++-12_12.1.0-7 gcc-12_12.1.0-7 libc6-dev_2.33-8 libstdc++-11-dev_11.3.0-5 libstdc++-12-dev_12.1.0-7 libstdc++-12-dev-amd64-cross_12.1.0-7cross1 libstdc++6_12.1.0-7 libstdc++6-amd64-cross_12.1.0-7cross1 linux-libc-dev_5.18.14-1 Package versions: adduser_3.123 apt_2.5.2 autoconf_2.71-2 automake_1:1.16.5-1.3 autopoint_0.21-6 autotools-dev_20220109.1 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+------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: libpwizlite Binary: libpwizlite-dev, libpwizlite3 Architecture: any Version: 3.0.4-1 Maintainer: The Debichem Group Uploaders: Filippo Rusconi Homepage: https://salsa.debian.org/debichem-team/libpwizlite Standards-Version: 4.6.0 Vcs-Browser: https://salsa.debian.org/debichem-team/libpwizlite Vcs-Git: https://salsa.debian.org/debichem-team/libpwizlite.git Build-Depends: debhelper-compat (= 13), cmake (>= 3.12), dh-exec (>= 0.3), dpkg-dev (>= 1.18.25), libboost-dev, libboost-thread-dev, libboost-filesystem-dev, libboost-iostreams-dev, libboost-chrono-dev, zlib1g-dev, python3-docutils Package-List: libpwizlite-dev deb libdevel optional arch=any libpwizlite3 deb libs optional arch=any Checksums-Sha1: a617b66348cc2af828ea9d81348ced1769f5fedf 746489 libpwizlite_3.0.4.orig.tar.gz bca6870726b870b05bad1fdfc6cf583c2ddf3073 7904 libpwizlite_3.0.4-1.debian.tar.xz Checksums-Sha256: e9ca7e1fa64d27479ecb9d06109bd4b59b0d88e71a3eb65f8f2aa81eb4aa00b0 746489 libpwizlite_3.0.4.orig.tar.gz 292aa639b9bf3310214bdd0c6bfe2bb5f661a00a807e26fee2befda63e27b750 7904 libpwizlite_3.0.4-1.debian.tar.xz Files: 809c0df7a435f493a396854e951c4313 746489 libpwizlite_3.0.4.orig.tar.gz 67e0cccfefd107643e7e19c1ba028c0f 7904 libpwizlite_3.0.4-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIyBAEBCAAdFiEEsFMwThfW1Bndm0ZRQatITXaUz0IFAmIwoEUACgkQQatITXaU z0Ig7A/41ef4TYkypa78XmwTrBNN8KWN9gftWm/p//Q3eINcRRRAsoMZ0YKdFr1o XHeIJRn4MkmTDMqnQGusTjGlhX1JYRQyQLUDWEvt7dfI8WQ1EPA4r0VV2pF72D/G 3bOA3I7CPJVO2fomx0//ou68kPHPb0cwbtiyGnjNkwWqcASdIe59VEpuvVLvsK0E nRvaF2AItxs3jnY79RoCVt+uGnRHkQVCnvxpPUBRhSOBRcXVSDpFCbBBPekxA5xy BNmHduewPj/lw+u4d4sXxKUL9TpCZeCThOarkvbw9W0U3/PT64wx5DA07/9QwxaQ NI3walzHHzgKF0b0ErhIluWBqnfO0mw2NFdCzwTWjc6rQIHPtPVEVAZQ5wU4M+wG weFyDXSRlnm2N8dC7fIMgObQukWVlKRihyKWlxJpUK2ISxtxbvGliJkmXSjFHzvA KJwCtVY4iXrGSN+ig+ctKZ6+U0v0E3kibrhUVI4FAplcnCss0sdkoT9W93Rrpa2b EnIilC7aCiice0TXhDz9ZpBpgxslqFMNZWwvXjvwdIUWh6lf8kMjPNZ0ucTgtlSN 1e0mnq2++jlLNm+TvbzsaN1mjniialrxct5Aqnc0jHXH9glPsiER4zoz+InnjOtu DFYasZdeFSM+eQvvPAk8o3oBw9AB/gMlLL9cNPmbojHbzZEfmQ== =TP5m -----END PGP SIGNATURE----- gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.VFKPqelW/trustedkeys.kbx': General error gpgv: Signature made Tue Mar 15 14:18:45 2022 UTC gpgv: using RSA key B053304E17D6D419DD9B465141AB484D7694CF42 gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify signature ./libpwizlite_3.0.4-1.dsc dpkg-source: info: extracting libpwizlite in /<> dpkg-source: info: unpacking libpwizlite_3.0.4.orig.tar.gz dpkg-source: info: unpacking libpwizlite_3.0.4-1.debian.tar.xz Check disk space ---------------- Sufficient free space for build +------------------------------------------------------------------------------+ | Starting Timed Build Commands | +------------------------------------------------------------------------------+ ulimit -c --------- 0 I: Finished running 'ulimit -c'. Finished processing commands. -------------------------------------------------------------------------------- User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.amd64 DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_GB.UTF-8 LC_ALL=C.UTF-8 LOGNAME=helmutg PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=crossqa-sid SCHROOT_CHROOT_NAME=crossqa-sid SCHROOT_COMMAND=env SCHROOT_GID=1002 SCHROOT_GROUP=helmutg SCHROOT_SESSION_ID=crossqa-sid-430a043b-0267-4302-8408-98bd69374f46 SCHROOT_UID=1002 SCHROOT_USER=helmutg SHELL=/bin/sh USER=helmutg dpkg-buildpackage ----------------- Command: dpkg-buildpackage -aamd64 -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package libpwizlite dpkg-buildpackage: info: source version 3.0.4-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Filippo Rusconi dpkg-architecture: warning: specified GNU system type x86_64-linux-gnu does not match CC system type aarch64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean dh clean --build-system=cmake debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' rm -f debian/libpwizlite.3 rm -rf debian/includes dh_clean make[1]: Leaving directory '/<>' dh_autoreconf_clean -O--build-system=cmake dh_clean -O--build-system=cmake debian/rules build-arch dh build-arch --build-system=cmake dh_update_autotools_config -a -O--build-system=cmake dh_autoreconf -a -O--build-system=cmake debian/rules override_dh_auto_configure make[1]: Entering directory '/<>' dh_auto_configure -- \ -DCMAKE_INSTALL_PREFIX="/usr" \ -DCMAKE_BUILD_TYPE=release cd obj-x86_64-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_SYSTEM_NAME=Linux -DCMAKE_SYSTEM_PROCESSOR=x86_64 -DCMAKE_C_COMPILER=x86_64-linux-gnu-gcc -DCMAKE_CXX_COMPILER=x86_64-linux-gnu-g\+\+ -DPKG_CONFIG_EXECUTABLE=/usr/bin/x86_64-linux-gnu-pkg-config -DPKGCONFIG_EXECUTABLE=/usr/bin/x86_64-linux-gnu-pkg-config -DQMAKE_EXECUTABLE=/usr/bin/x86_64-linux-gnu-qmake -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=release .. -- The CXX compiler identification is GNU 12.1.0 -- The C compiler identification is GNU 12.1.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/x86_64-linux-gnu-g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/x86_64-linux-gnu-gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- CMAKE_LIBRARY_ARCHITECTURE: x86_64-linux-gnu -- Set CMAKE_INSTALL_PREFIX to /usr -- Install directory prefix: /usr -- CMAKE_INSTALL_FULL_LIBDIR: /usr/lib/x86_64-linux-gnu -- CMAKE_INSTALL_FULL_INCLUDEDIR: /usr/include Configuring build for project pwizlite -- Set CMAKE_CXX_STANDARD to 17 (required) -- CMAKE_CXX_COMPILER: /usr/bin/x86_64-linux-gnu-g++ -- Setting definition -Wno-unknown-pragmas. -- Setting definition -Wall. -- Setting definition -Wextra. -- CMAKE_SOURCE_DIR: /<> UNIX non APPLE environment Please run the configuration like this: cmake -G "Unix Makefiles" -DCMAKE_BUILD_TYPE=Debug ../development -- Found ZLIB: /usr/lib/x86_64-linux-gnu/libz.so (found version "1.2.11") -- Found Boost: /usr/lib/x86_64-linux-gnu/cmake/Boost-1.74.0/BoostConfig.cmake (found version "1.74.0") found components: iostreams thread filesystem chrono -- Starting configuration of pwizlite -- The build toolchain is: Linux  -- CMAKE_CURRENT_BINARY_DIR: /<>/obj-x86_64-linux-gnu -- CMAKE_BUILD_TYPE: release. -- Adding subdirectory src for PROJECT: pwizlite -- Setting -Wall. -- Boost_LIBRARIES found 1_74 -- Boost_INCLUDES: /usr/include -- Boost_LIB_DIRS: /usr/lib/x86_64-linux-gnu -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY FETCHCONTENT_FULLY_DISCONNECTED PKGCONFIG_EXECUTABLE PKG_CONFIG_EXECUTABLE QMAKE_EXECUTABLE -- Build files have been written to: /<>/obj-x86_64-linux-gnu rst2man debian/libpwizlite.3.rst > debian/libpwizlite.3 sh debian/make-included-headers-hierarchy.sh baseName: base.hpp dirName: boost/enum 'boost/enum/base.hpp' -> '/<>/debian/includes/pwizlite/boost/enum/base.hpp' baseName: bitfield.hpp dirName: boost/enum 'boost/enum/bitfield.hpp' -> '/<>/debian/includes/pwizlite/boost/enum/bitfield.hpp' baseName: iterator.hpp dirName: boost/enum 'boost/enum/iterator.hpp' -> '/<>/debian/includes/pwizlite/boost/enum/iterator.hpp' baseName: macros.hpp dirName: boost/enum 'boost/enum/macros.hpp' -> '/<>/debian/includes/pwizlite/boost/enum/macros.hpp' baseName: args.hpp dirName: boost/nowide 'boost/nowide/args.hpp' -> '/<>/debian/includes/pwizlite/boost/nowide/args.hpp' baseName: convert.hpp dirName: boost/nowide 'boost/nowide/convert.hpp' -> '/<>/debian/includes/pwizlite/boost/nowide/convert.hpp' baseName: cenv.hpp dirName: boost/nowide 'boost/nowide/cenv.hpp' -> '/<>/debian/includes/pwizlite/boost/nowide/cenv.hpp' baseName: cstdlib.hpp dirName: boost/nowide 'boost/nowide/cstdlib.hpp' -> '/<>/debian/includes/pwizlite/boost/nowide/cstdlib.hpp' baseName: stackstring.hpp dirName: boost/nowide 'boost/nowide/stackstring.hpp' -> '/<>/debian/includes/pwizlite/boost/nowide/stackstring.hpp' baseName: filebuf.hpp dirName: boost/nowide 'boost/nowide/filebuf.hpp' -> '/<>/debian/includes/pwizlite/boost/nowide/filebuf.hpp' baseName: fstream.hpp dirName: boost/nowide 'boost/nowide/fstream.hpp' -> '/<>/debian/includes/pwizlite/boost/nowide/fstream.hpp' baseName: cstdio.hpp dirName: boost/nowide 'boost/nowide/cstdio.hpp' -> '/<>/debian/includes/pwizlite/boost/nowide/cstdio.hpp' baseName: system.hpp dirName: boost/nowide 'boost/nowide/system.hpp' -> '/<>/debian/includes/pwizlite/boost/nowide/system.hpp' baseName: windows.hpp dirName: boost/nowide 'boost/nowide/windows.hpp' -> '/<>/debian/includes/pwizlite/boost/nowide/windows.hpp' baseName: iostream.hpp dirName: boost/nowide 'boost/nowide/iostream.hpp' -> '/<>/debian/includes/pwizlite/boost/nowide/iostream.hpp' baseName: config.hpp dirName: boost/nowide 'boost/nowide/config.hpp' -> '/<>/debian/includes/pwizlite/boost/nowide/config.hpp' baseName: arbitrary_positional_facade.hpp dirName: boost/iostreams 'boost/iostreams/arbitrary_positional_facade.hpp' -> '/<>/debian/includes/pwizlite/boost/iostreams/arbitrary_positional_facade.hpp' baseName: base64.hpp dirName: boost/iostreams/filter 'boost/iostreams/filter/base64.hpp' -> '/<>/debian/includes/pwizlite/boost/iostreams/filter/base64.hpp' baseName: singleton.hpp dirName: boost/utility 'boost/utility/singleton.hpp' -> '/<>/debian/includes/pwizlite/boost/utility/singleton.hpp' baseName: thread_specific_singleton.hpp dirName: boost/utility 'boost/utility/thread_specific_singleton.hpp' -> '/<>/debian/includes/pwizlite/boost/utility/thread_specific_singleton.hpp' baseName: mutexed_singleton.hpp dirName: boost/utility 'boost/utility/mutexed_singleton.hpp' -> '/<>/debian/includes/pwizlite/boost/utility/mutexed_singleton.hpp' baseName: member_dereference.hpp dirName: boost/utility/detail 'boost/utility/detail/member_dereference.hpp' -> '/<>/debian/includes/pwizlite/boost/utility/detail/member_dereference.hpp' baseName: restricted.hpp dirName: boost/utility/detail 'boost/utility/detail/restricted.hpp' -> '/<>/debian/includes/pwizlite/boost/utility/detail/restricted.hpp' baseName: singleton_manager.hpp dirName: boost/utility/detail 'boost/utility/detail/singleton_manager.hpp' -> '/<>/debian/includes/pwizlite/boost/utility/detail/singleton_manager.hpp' baseName: foreach_field.hpp dirName: boost 'boost/foreach_field.hpp' -> '/<>/debian/includes/pwizlite/boost/foreach_field.hpp' baseName: enum.hpp dirName: boost 'boost/enum.hpp' -> '/<>/debian/includes/pwizlite/boost/enum.hpp' baseName: DemuxDataProcessingStrings.hpp dirName: pwiz/analysis/demux 'pwiz/analysis/demux/DemuxDataProcessingStrings.hpp' -> '/<>/debian/includes/pwizlite/pwiz/analysis/demux/DemuxDataProcessingStrings.hpp' baseName: SpectrumList_Demux.hpp dirName: pwiz/analysis/spectrum_processing 'pwiz/analysis/spectrum_processing/SpectrumList_Demux.hpp' -> '/<>/debian/includes/pwizlite/pwiz/analysis/spectrum_processing/SpectrumList_Demux.hpp' baseName: Version.hpp dirName: pwiz 'pwiz/Version.hpp' -> '/<>/debian/includes/pwizlite/pwiz/Version.hpp' baseName: ParamTypes.hpp dirName: pwiz/data/common 'pwiz/data/common/ParamTypes.hpp' -> '/<>/debian/includes/pwizlite/pwiz/data/common/ParamTypes.hpp' baseName: diff_std.hpp dirName: pwiz/data/common 'pwiz/data/common/diff_std.hpp' -> '/<>/debian/includes/pwizlite/pwiz/data/common/diff_std.hpp' baseName: MemoryIndex.hpp dirName: pwiz/data/common 'pwiz/data/common/MemoryIndex.hpp' -> '/<>/debian/includes/pwizlite/pwiz/data/common/MemoryIndex.hpp' baseName: Index.hpp dirName: pwiz/data/common 'pwiz/data/common/Index.hpp' -> '/<>/debian/includes/pwizlite/pwiz/data/common/Index.hpp' baseName: CVTranslator.hpp dirName: pwiz/data/common 'pwiz/data/common/CVTranslator.hpp' -> '/<>/debian/includes/pwizlite/pwiz/data/common/CVTranslator.hpp' baseName: Unimod.hpp dirName: pwiz/data/common 'pwiz/data/common/Unimod.hpp' -> '/<>/debian/includes/pwizlite/pwiz/data/common/Unimod.hpp' baseName: obo.hpp dirName: pwiz/data/common 'pwiz/data/common/obo.hpp' -> '/<>/debian/includes/pwizlite/pwiz/data/common/obo.hpp' baseName: cv.hpp dirName: pwiz/data/common 'pwiz/data/common/cv.hpp' -> '/<>/debian/includes/pwizlite/pwiz/data/common/cv.hpp' baseName: BinaryIndexStream.hpp dirName: pwiz/data/common 'pwiz/data/common/BinaryIndexStream.hpp' -> '/<>/debian/includes/pwizlite/pwiz/data/common/BinaryIndexStream.hpp' baseName: SampleDatum.hpp dirName: pwiz/data/misc 'pwiz/data/misc/SampleDatum.hpp' -> '/<>/debian/includes/pwizlite/pwiz/data/misc/SampleDatum.hpp' baseName: FrequencyData.hpp dirName: pwiz/data/misc 'pwiz/data/misc/FrequencyData.hpp' -> '/<>/debian/includes/pwizlite/pwiz/data/misc/FrequencyData.hpp' baseName: FrequencyDataTestData.hpp dirName: pwiz/data/misc 'pwiz/data/misc/FrequencyDataTestData.hpp' -> '/<>/debian/includes/pwizlite/pwiz/data/misc/FrequencyDataTestData.hpp' baseName: CalibrationParameters.hpp dirName: pwiz/data/misc 'pwiz/data/misc/CalibrationParameters.hpp' -> '/<>/debian/includes/pwizlite/pwiz/data/misc/CalibrationParameters.hpp' baseName: MinimumPepXML.hpp dirName: pwiz/data/misc 'pwiz/data/misc/MinimumPepXML.hpp' -> '/<>/debian/includes/pwizlite/pwiz/data/misc/MinimumPepXML.hpp' baseName: PeakData.hpp dirName: pwiz/data/misc 'pwiz/data/misc/PeakData.hpp' -> '/<>/debian/includes/pwizlite/pwiz/data/misc/PeakData.hpp' baseName: SpectrumIterator.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/SpectrumIterator.hpp' -> '/<>/debian/includes/pwizlite/pwiz/data/msdata/SpectrumIterator.hpp' baseName: Serializer_mzXML.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/Serializer_mzXML.hpp' -> '/<>/debian/includes/pwizlite/pwiz/data/msdata/Serializer_mzXML.hpp' baseName: Version.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/Version.hpp' -> '/<>/debian/includes/pwizlite/pwiz/data/msdata/Version.hpp' baseName: SpectrumInfo.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/SpectrumInfo.hpp' -> '/<>/debian/includes/pwizlite/pwiz/data/msdata/SpectrumInfo.hpp' baseName: RAMPAdapter.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/RAMPAdapter.hpp' -> '/<>/debian/includes/pwizlite/pwiz/data/msdata/RAMPAdapter.hpp' baseName: MSDataFile.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/MSDataFile.hpp' -> '/<>/debian/includes/pwizlite/pwiz/data/msdata/MSDataFile.hpp' baseName: DefaultReaderList.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/DefaultReaderList.hpp' -> '/<>/debian/includes/pwizlite/pwiz/data/msdata/DefaultReaderList.hpp' baseName: SpectrumList_mz5.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/SpectrumList_mz5.hpp' -> '/<>/debian/includes/pwizlite/pwiz/data/msdata/SpectrumList_mz5.hpp' baseName: ChromatogramList_mzML.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/ChromatogramList_mzML.hpp' -> '/<>/debian/includes/pwizlite/pwiz/data/msdata/ChromatogramList_mzML.hpp' baseName: Reader.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/Reader.hpp' -> '/<>/debian/includes/pwizlite/pwiz/data/msdata/Reader.hpp' baseName: TextWriter.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/TextWriter.hpp' -> '/<>/debian/includes/pwizlite/pwiz/data/msdata/TextWriter.hpp' baseName: SpectrumWorkerThreads.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/SpectrumWorkerThreads.hpp' -> '/<>/debian/includes/pwizlite/pwiz/data/msdata/SpectrumWorkerThreads.hpp' baseName: SpectrumList_mzXML.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/SpectrumList_mzXML.hpp' -> '/<>/debian/includes/pwizlite/pwiz/data/msdata/SpectrumList_mzXML.hpp' baseName: Diff.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/Diff.hpp' -> '/<>/debian/includes/pwizlite/pwiz/data/msdata/Diff.hpp' baseName: SpectrumList_BTDX.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/SpectrumList_BTDX.hpp' -> '/<>/debian/includes/pwizlite/pwiz/data/msdata/SpectrumList_BTDX.hpp' baseName: MSDataMerger.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/MSDataMerger.hpp' -> '/<>/debian/includes/pwizlite/pwiz/data/msdata/MSDataMerger.hpp' baseName: SpectrumListCache.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/SpectrumListCache.hpp' -> '/<>/debian/includes/pwizlite/pwiz/data/msdata/SpectrumListCache.hpp' baseName: References.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/References.hpp' -> '/<>/debian/includes/pwizlite/pwiz/data/msdata/References.hpp' baseName: Serializer_MGF.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/Serializer_MGF.hpp' -> '/<>/debian/includes/pwizlite/pwiz/data/msdata/Serializer_MGF.hpp' baseName: ChromatogramListBase.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/ChromatogramListBase.hpp' -> '/<>/debian/includes/pwizlite/pwiz/data/msdata/ChromatogramListBase.hpp' baseName: MSNumpress.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/MSNumpress.hpp' -> '/<>/debian/includes/pwizlite/pwiz/data/msdata/MSNumpress.hpp' baseName: BinaryDataEncoder.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/BinaryDataEncoder.hpp' -> '/<>/debian/includes/pwizlite/pwiz/data/msdata/BinaryDataEncoder.hpp' baseName: examples.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/examples.hpp' -> '/<>/debian/includes/pwizlite/pwiz/data/msdata/examples.hpp' baseName: Index_mzML.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/Index_mzML.hpp' -> '/<>/debian/includes/pwizlite/pwiz/data/msdata/Index_mzML.hpp' baseName: MemoryMRUCache.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/MemoryMRUCache.hpp' -> '/<>/debian/includes/pwizlite/pwiz/data/msdata/MemoryMRUCache.hpp' baseName: SpectrumList_MGF.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/SpectrumList_MGF.hpp' -> '/<>/debian/includes/pwizlite/pwiz/data/msdata/SpectrumList_MGF.hpp' baseName: Serializer_mzML.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/Serializer_mzML.hpp' -> '/<>/debian/includes/pwizlite/pwiz/data/msdata/Serializer_mzML.hpp' baseName: SpectrumList_mzML.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/SpectrumList_mzML.hpp' -> '/<>/debian/includes/pwizlite/pwiz/data/msdata/SpectrumList_mzML.hpp' baseName: SpectrumListWrapper.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/SpectrumListWrapper.hpp' -> '/<>/debian/includes/pwizlite/pwiz/data/msdata/SpectrumListWrapper.hpp' baseName: SHA1OutputObserver.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/SHA1OutputObserver.hpp' -> '/<>/debian/includes/pwizlite/pwiz/data/msdata/SHA1OutputObserver.hpp' baseName: SpectrumList_MSn.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/SpectrumList_MSn.hpp' -> '/<>/debian/includes/pwizlite/pwiz/data/msdata/SpectrumList_MSn.hpp' baseName: IO.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/IO.hpp' -> '/<>/debian/includes/pwizlite/pwiz/data/msdata/IO.hpp' baseName: LegacyAdapter.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/LegacyAdapter.hpp' -> '/<>/debian/includes/pwizlite/pwiz/data/msdata/LegacyAdapter.hpp' baseName: Serializer_MSn.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/Serializer_MSn.hpp' -> '/<>/debian/includes/pwizlite/pwiz/data/msdata/Serializer_MSn.hpp' baseName: MSData.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/MSData.hpp' -> '/<>/debian/includes/pwizlite/pwiz/data/msdata/MSData.hpp' baseName: SpectrumListBase.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/SpectrumListBase.hpp' -> '/<>/debian/includes/pwizlite/pwiz/data/msdata/SpectrumListBase.hpp' baseName: Serializer_mz5.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/Serializer_mz5.hpp' -> '/<>/debian/includes/pwizlite/pwiz/data/msdata/Serializer_mz5.hpp' baseName: ChromatogramList_mz5.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/ChromatogramList_mz5.hpp' -> '/<>/debian/includes/pwizlite/pwiz/data/msdata/ChromatogramList_mz5.hpp' baseName: IsotopeTable.hpp dirName: pwiz/utility/chemistry 'pwiz/utility/chemistry/IsotopeTable.hpp' -> '/<>/debian/includes/pwizlite/pwiz/utility/chemistry/IsotopeTable.hpp' baseName: Ion.hpp dirName: pwiz/utility/chemistry 'pwiz/utility/chemistry/Ion.hpp' -> '/<>/debian/includes/pwizlite/pwiz/utility/chemistry/Ion.hpp' baseName: IsotopeEnvelopeEstimator.hpp dirName: pwiz/utility/chemistry 'pwiz/utility/chemistry/IsotopeEnvelopeEstimator.hpp' -> '/<>/debian/includes/pwizlite/pwiz/utility/chemistry/IsotopeEnvelopeEstimator.hpp' baseName: MZTolerance.hpp dirName: pwiz/utility/chemistry 'pwiz/utility/chemistry/MZTolerance.hpp' -> '/<>/debian/includes/pwizlite/pwiz/utility/chemistry/MZTolerance.hpp' baseName: MzMobilityWindow.hpp dirName: pwiz/utility/chemistry 'pwiz/utility/chemistry/MzMobilityWindow.hpp' -> '/<>/debian/includes/pwizlite/pwiz/utility/chemistry/MzMobilityWindow.hpp' baseName: Chemistry.hpp dirName: pwiz/utility/chemistry 'pwiz/utility/chemistry/Chemistry.hpp' -> '/<>/debian/includes/pwizlite/pwiz/utility/chemistry/Chemistry.hpp' baseName: IsotopeCalculator.hpp dirName: pwiz/utility/chemistry 'pwiz/utility/chemistry/IsotopeCalculator.hpp' -> '/<>/debian/includes/pwizlite/pwiz/utility/chemistry/IsotopeCalculator.hpp' baseName: ChemistryData.hpp dirName: pwiz/utility/chemistry 'pwiz/utility/chemistry/ChemistryData.hpp' -> '/<>/debian/includes/pwizlite/pwiz/utility/chemistry/ChemistryData.hpp' baseName: gaussfilter.hpp dirName: pwiz/utility/findmf/base/filter 'pwiz/utility/findmf/base/filter/gaussfilter.hpp' -> '/<>/debian/includes/pwizlite/pwiz/utility/findmf/base/filter/gaussfilter.hpp' baseName: gauss.hpp dirName: pwiz/utility/findmf/base/filter/utilities 'pwiz/utility/findmf/base/filter/utilities/gauss.hpp' -> '/<>/debian/includes/pwizlite/pwiz/utility/findmf/base/filter/utilities/gauss.hpp' baseName: preparedata.hpp dirName: pwiz/utility/findmf/base/filter/utilities 'pwiz/utility/findmf/base/filter/utilities/preparedata.hpp' -> '/<>/debian/includes/pwizlite/pwiz/utility/findmf/base/filter/utilities/preparedata.hpp' baseName: filter.hpp dirName: pwiz/utility/findmf/base/filter 'pwiz/utility/findmf/base/filter/filter.hpp' -> '/<>/debian/includes/pwizlite/pwiz/utility/findmf/base/filter/filter.hpp' baseName: determinebinwidth.hpp dirName: pwiz/utility/findmf/base/resample/utilities 'pwiz/utility/findmf/base/resample/utilities/determinebinwidth.hpp' -> '/<>/debian/includes/pwizlite/pwiz/utility/findmf/base/resample/utilities/determinebinwidth.hpp' baseName: determinebinwidth.hpp dirName: pwiz/utility/findmf/base/resample 'pwiz/utility/findmf/base/resample/determinebinwidth.hpp' -> '/<>/debian/includes/pwizlite/pwiz/utility/findmf/base/resample/determinebinwidth.hpp' baseName: breakspec.hpp dirName: pwiz/utility/findmf/base/resample 'pwiz/utility/findmf/base/resample/breakspec.hpp' -> '/<>/debian/includes/pwizlite/pwiz/utility/findmf/base/resample/breakspec.hpp' baseName: masscomparefunctors.hpp dirName: pwiz/utility/findmf/base/resample 'pwiz/utility/findmf/base/resample/masscomparefunctors.hpp' -> '/<>/debian/includes/pwizlite/pwiz/utility/findmf/base/resample/masscomparefunctors.hpp' baseName: bin1d.hpp dirName: pwiz/utility/findmf/base/resample 'pwiz/utility/findmf/base/resample/bin1d.hpp' -> '/<>/debian/includes/pwizlite/pwiz/utility/findmf/base/resample/bin1d.hpp' baseName: diff.hpp dirName: pwiz/utility/findmf/base/base 'pwiz/utility/findmf/base/base/diff.hpp' -> '/<>/debian/includes/pwizlite/pwiz/utility/findmf/base/base/diff.hpp' baseName: scale.hpp dirName: pwiz/utility/findmf/base/base 'pwiz/utility/findmf/base/base/scale.hpp' -> '/<>/debian/includes/pwizlite/pwiz/utility/findmf/base/base/scale.hpp' baseName: constants.hpp dirName: pwiz/utility/findmf/base/base 'pwiz/utility/findmf/base/base/constants.hpp' -> '/<>/debian/includes/pwizlite/pwiz/utility/findmf/base/base/constants.hpp' baseName: interpolation.hpp dirName: pwiz/utility/findmf/base/base/utilities 'pwiz/utility/findmf/base/base/utilities/interpolation.hpp' -> '/<>/debian/includes/pwizlite/pwiz/utility/findmf/base/base/utilities/interpolation.hpp' baseName: base.hpp dirName: pwiz/utility/findmf/base/base/utilities 'pwiz/utility/findmf/base/base/utilities/base.hpp' -> '/<>/debian/includes/pwizlite/pwiz/utility/findmf/base/base/utilities/base.hpp' baseName: base.hpp dirName: pwiz/utility/findmf/base/base 'pwiz/utility/findmf/base/base/base.hpp' -> '/<>/debian/includes/pwizlite/pwiz/utility/findmf/base/base/base.hpp' baseName: copyif.hpp dirName: pwiz/utility/findmf/base/base 'pwiz/utility/findmf/base/base/copyif.hpp' -> '/<>/debian/includes/pwizlite/pwiz/utility/findmf/base/base/copyif.hpp' baseName: interpolate.hpp dirName: pwiz/utility/findmf/base/base 'pwiz/utility/findmf/base/base/interpolate.hpp' -> '/<>/debian/includes/pwizlite/pwiz/utility/findmf/base/base/interpolate.hpp' baseName: Parabola.hpp dirName: pwiz/utility/math 'pwiz/utility/math/Parabola.hpp' -> '/<>/debian/includes/pwizlite/pwiz/utility/math/Parabola.hpp' baseName: MatrixInverse.hpp dirName: pwiz/utility/math 'pwiz/utility/math/MatrixInverse.hpp' -> '/<>/debian/includes/pwizlite/pwiz/utility/math/MatrixInverse.hpp' baseName: MatchedFilter.hpp dirName: pwiz/utility/math 'pwiz/utility/math/MatchedFilter.hpp' -> '/<>/debian/includes/pwizlite/pwiz/utility/math/MatchedFilter.hpp' baseName: OrderedPair.hpp dirName: pwiz/utility/math 'pwiz/utility/math/OrderedPair.hpp' -> '/<>/debian/includes/pwizlite/pwiz/utility/math/OrderedPair.hpp' baseName: qr.hpp dirName: pwiz/utility/math 'pwiz/utility/math/qr.hpp' -> '/<>/debian/includes/pwizlite/pwiz/utility/math/qr.hpp' baseName: HouseholderQR.hpp dirName: pwiz/utility/math 'pwiz/utility/math/HouseholderQR.hpp' -> '/<>/debian/includes/pwizlite/pwiz/utility/math/HouseholderQR.hpp' baseName: LinearSolver.hpp dirName: pwiz/utility/math 'pwiz/utility/math/LinearSolver.hpp' -> '/<>/debian/includes/pwizlite/pwiz/utility/math/LinearSolver.hpp' baseName: round.hpp dirName: pwiz/utility/math 'pwiz/utility/math/round.hpp' -> '/<>/debian/includes/pwizlite/pwiz/utility/math/round.hpp' baseName: erf.hpp dirName: pwiz/utility/math 'pwiz/utility/math/erf.hpp' -> '/<>/debian/includes/pwizlite/pwiz/utility/math/erf.hpp' baseName: LinearLeastSquares.hpp dirName: pwiz/utility/math 'pwiz/utility/math/LinearLeastSquares.hpp' -> '/<>/debian/includes/pwizlite/pwiz/utility/math/LinearLeastSquares.hpp' baseName: Types.hpp dirName: pwiz/utility/math 'pwiz/utility/math/Types.hpp' -> '/<>/debian/includes/pwizlite/pwiz/utility/math/Types.hpp' baseName: Stats.hpp dirName: pwiz/utility/math 'pwiz/utility/math/Stats.hpp' -> '/<>/debian/includes/pwizlite/pwiz/utility/math/Stats.hpp' baseName: SAXParser.hpp dirName: pwiz/utility/minimxml 'pwiz/utility/minimxml/SAXParser.hpp' -> '/<>/debian/includes/pwizlite/pwiz/utility/minimxml/SAXParser.hpp' baseName: XMLWriter.hpp dirName: pwiz/utility/minimxml 'pwiz/utility/minimxml/XMLWriter.hpp' -> '/<>/debian/includes/pwizlite/pwiz/utility/minimxml/XMLWriter.hpp' baseName: Stream.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/Stream.hpp' -> '/<>/debian/includes/pwizlite/pwiz/utility/misc/Stream.hpp' baseName: SHA1.h dirName: pwiz/utility/misc 'pwiz/utility/misc/SHA1.h' -> '/<>/debian/includes/pwizlite/pwiz/utility/misc/SHA1.h' baseName: IntegerSet.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/IntegerSet.hpp' -> '/<>/debian/includes/pwizlite/pwiz/utility/misc/IntegerSet.hpp' baseName: VendorReaderTestHarness.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/VendorReaderTestHarness.hpp' -> '/<>/debian/includes/pwizlite/pwiz/utility/misc/VendorReaderTestHarness.hpp' baseName: Singleton.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/Singleton.hpp' -> '/<>/debian/includes/pwizlite/pwiz/utility/misc/Singleton.hpp' baseName: IterationListener.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/IterationListener.hpp' -> '/<>/debian/includes/pwizlite/pwiz/utility/misc/IterationListener.hpp' baseName: Container.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/Container.hpp' -> '/<>/debian/includes/pwizlite/pwiz/utility/misc/Container.hpp' baseName: Timer.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/Timer.hpp' -> '/<>/debian/includes/pwizlite/pwiz/utility/misc/Timer.hpp' baseName: CharIndexedVector.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/CharIndexedVector.hpp' -> '/<>/debian/includes/pwizlite/pwiz/utility/misc/CharIndexedVector.hpp' baseName: String.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/String.hpp' -> '/<>/debian/includes/pwizlite/pwiz/utility/misc/String.hpp' baseName: SHA1_ostream.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/SHA1_ostream.hpp' -> '/<>/debian/includes/pwizlite/pwiz/utility/misc/SHA1_ostream.hpp' baseName: almost_equal.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/almost_equal.hpp' -> '/<>/debian/includes/pwizlite/pwiz/utility/misc/almost_equal.hpp' baseName: COMInitializer.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/COMInitializer.hpp' -> '/<>/debian/includes/pwizlite/pwiz/utility/misc/COMInitializer.hpp' baseName: Base64.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/Base64.hpp' -> '/<>/debian/includes/pwizlite/pwiz/utility/misc/Base64.hpp' baseName: Image.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/Image.hpp' -> '/<>/debian/includes/pwizlite/pwiz/utility/misc/Image.hpp' baseName: optimized_lexical_cast.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/optimized_lexical_cast.hpp' -> '/<>/debian/includes/pwizlite/pwiz/utility/misc/optimized_lexical_cast.hpp' baseName: mru_list.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/mru_list.hpp' -> '/<>/debian/includes/pwizlite/pwiz/utility/misc/mru_list.hpp' baseName: TabReader.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/TabReader.hpp' -> '/<>/debian/includes/pwizlite/pwiz/utility/misc/TabReader.hpp' baseName: endian.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/endian.hpp' -> '/<>/debian/includes/pwizlite/pwiz/utility/misc/endian.hpp' baseName: Exception.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/Exception.hpp' -> '/<>/debian/includes/pwizlite/pwiz/utility/misc/Exception.hpp' baseName: Std.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/Std.hpp' -> '/<>/debian/includes/pwizlite/pwiz/utility/misc/Std.hpp' baseName: virtual_map.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/virtual_map.hpp' -> '/<>/debian/includes/pwizlite/pwiz/utility/misc/virtual_map.hpp' baseName: BinaryData.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/BinaryData.hpp' -> '/<>/debian/includes/pwizlite/pwiz/utility/misc/BinaryData.hpp' baseName: DateTime.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/DateTime.hpp' -> '/<>/debian/includes/pwizlite/pwiz/utility/misc/DateTime.hpp' baseName: ClickwrapPrompter.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/ClickwrapPrompter.hpp' -> '/<>/debian/includes/pwizlite/pwiz/utility/misc/ClickwrapPrompter.hpp' baseName: random_access_compressed_ifstream.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/random_access_compressed_ifstream.hpp' -> '/<>/debian/includes/pwizlite/pwiz/utility/misc/random_access_compressed_ifstream.hpp' baseName: automation_vector.h dirName: pwiz/utility/misc 'pwiz/utility/misc/automation_vector.h' -> '/<>/debian/includes/pwizlite/pwiz/utility/misc/automation_vector.h' baseName: MSIHandler.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/MSIHandler.hpp' -> '/<>/debian/includes/pwizlite/pwiz/utility/misc/MSIHandler.hpp' baseName: Once.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/Once.hpp' -> '/<>/debian/includes/pwizlite/pwiz/utility/misc/Once.hpp' baseName: Export.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/Export.hpp' -> '/<>/debian/includes/pwizlite/pwiz/utility/misc/Export.hpp' baseName: unit.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/unit.hpp' -> '/<>/debian/includes/pwizlite/pwiz/utility/misc/unit.hpp' baseName: cpp_cli_utilities.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/cpp_cli_utilities.hpp' -> '/<>/debian/includes/pwizlite/pwiz/utility/misc/cpp_cli_utilities.hpp' baseName: Environment.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/Environment.hpp' -> '/<>/debian/includes/pwizlite/pwiz/utility/misc/Environment.hpp' baseName: Filesystem.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/Filesystem.hpp' -> '/<>/debian/includes/pwizlite/pwiz/utility/misc/Filesystem.hpp' baseName: shared_map.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/shared_map.hpp' -> '/<>/debian/includes/pwizlite/pwiz/utility/misc/shared_map.hpp' baseName: SHA1Calculator.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/SHA1Calculator.hpp' -> '/<>/debian/includes/pwizlite/pwiz/utility/misc/SHA1Calculator.hpp' make[1]: Leaving directory '/<>' dh_auto_build -a -O--build-system=cmake cd obj-x86_64-linux-gnu && make -j1 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/<>/obj-x86_64-linux-gnu' /usr/bin/cmake -S/<> -B/<>/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/obj-x86_64-linux-gnu/CMakeFiles /<>/obj-x86_64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/<>/obj-x86_64-linux-gnu' make -f src/CMakeFiles/pwizlite-static.dir/build.make src/CMakeFiles/pwizlite-static.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/src /<>/obj-x86_64-linux-gnu/src/CMakeFiles/pwizlite-static.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f src/CMakeFiles/pwizlite-static.dir/build.make src/CMakeFiles/pwizlite-static.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 1%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/minimxml/XMLWriter.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/<>/obj-x86_64-linux-gnu/src -I/<>/src -I/<>/src/boost -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/utility/minimxml/XMLWriter.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/utility/minimxml/XMLWriter.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/utility/minimxml/XMLWriter.cpp.o -c /<>/src/pwiz/utility/minimxml/XMLWriter.cpp [ 2%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/minimxml/SAXParser.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/<>/obj-x86_64-linux-gnu/src -I/<>/src -I/<>/src/boost -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/utility/minimxml/SAXParser.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/utility/minimxml/SAXParser.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/utility/minimxml/SAXParser.cpp.o -c /<>/src/pwiz/utility/minimxml/SAXParser.cpp In file included from /<>/src/pwiz/utility/minimxml/SAXParser.cpp:28: /<>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)’: /<>/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter ‘name’ [-Wunused-parameter] 585 | virtual Status processingInstruction(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter ‘data’ [-Wunused-parameter] 586 | const std::string& data, | ~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter ‘position’ [-Wunused-parameter] 587 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)’: /<>/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter ‘name’ [-Wunused-parameter] 589 | virtual Status startElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter ‘attributes’ [-Wunused-parameter] 590 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter ‘position’ [-Wunused-parameter] 591 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)’: /<>/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter ‘name’ [-Wunused-parameter] 593 | virtual Status endElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter ‘position’ [-Wunused-parameter] 594 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)’: /<>/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter ‘text’ [-Wunused-parameter] 596 | virtual Status characters(const SAXParser::saxstring& text, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter ‘position’ [-Wunused-parameter] 597 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/utility/minimxml/SAXParser.cpp: In function ‘void pwiz::minimxml::SAXParser::parse(std::istream&, Handler&)’: /<>/src/pwiz/utility/minimxml/SAXParser.cpp:543:61: warning: offset ‘1’ outside bounds of constant string [-Warray-bounds] 543 | Handler::Status status = wrangler.endElement(buffer.c_str()+1, position); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/pwiz/utility/minimxml/SAXParser.cpp:549:17: warning: ‘inCDATA’ may be used uninitialized [-Wmaybe-uninitialized] 549 | if (inCDATA) | ^~ /<>/src/pwiz/utility/minimxml/SAXParser.cpp:501:14: note: ‘inCDATA’ was declared here 501 | bool inCDATA; | ^~~~~~~ [ 3%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/IterationListener.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/<>/obj-x86_64-linux-gnu/src -I/<>/src -I/<>/src/boost -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/IterationListener.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/IterationListener.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/IterationListener.cpp.o -c /<>/src/pwiz/utility/misc/IterationListener.cpp In file included from /<>/src/pwiz/utility/misc/IterationListener.cpp:27: /<>/src/pwiz/utility/misc/IterationListener.hpp: In member function ‘virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)’: /<>/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter ‘updateMessage’ [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ [ 5%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/BinaryData.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/<>/obj-x86_64-linux-gnu/src -I/<>/src -I/<>/src/boost -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/BinaryData.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/BinaryData.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/BinaryData.cpp.o -c /<>/src/pwiz/utility/misc/BinaryData.cpp In file included from /<>/src/pwiz/utility/misc/BinaryData.cpp:24: /<>/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/x86_64-linux-gnu/include/c++/12/bits/stl_algobase.h:65, from /usr/x86_64-linux-gnu/include/c++/12/algorithm:60, from /<>/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/x86_64-linux-gnu/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/x86_64-linux-gnu/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.hpp: In instantiation of ‘const T& pwiz::util::BinaryData::at(size_type) const [with T = double; const_reference = const double&; size_type = long unsigned int]’: /<>/src/pwiz/utility/misc/BinaryData.cpp:470:30: required from here /<>/src/pwiz/utility/misc/BinaryData.hpp:256:19: warning: comparison of unsigned expression in ‘< 0’ is always false [-Wtype-limits] 256 | if (index < 0 || index >= size()) | ~~~~~~^~~ /<>/src/pwiz/utility/misc/BinaryData.hpp: In instantiation of ‘T& pwiz::util::BinaryData::at(size_type) [with T = double; reference = double&; size_type = long unsigned int]’: /<>/src/pwiz/utility/misc/BinaryData.cpp:470:30: required from here /<>/src/pwiz/utility/misc/BinaryData.hpp:263:19: warning: comparison of unsigned expression in ‘< 0’ is always false [-Wtype-limits] 263 | if (index < 0 || index >= size()) | ~~~~~~^~~ /<>/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of ‘pwiz::util::BinaryData::Impl::Impl(void*) [with T = double]’: /<>/src/pwiz/utility/misc/BinaryData.cpp:470:30: required from here /<>/src/pwiz/utility/misc/BinaryData.cpp:57:16: warning: unused parameter ‘cliNumericArray’ [-Wunused-parameter] 57 | Impl(void* cliNumericArray) | ~~~~~~^~~~~~~~~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of ‘pwiz::util::BinaryData::Impl& pwiz::util::BinaryData::Impl::operator=(void*) [with T = double]’: /<>/src/pwiz/utility/misc/BinaryData.cpp:470:30: required from here /<>/src/pwiz/utility/misc/BinaryData.cpp:71:27: warning: unused parameter ‘cliNumericArray’ [-Wunused-parameter] 71 | Impl& operator=(void* cliNumericArray) | ~~~~~~^~~~~~~~~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of ‘void pwiz::util::BinaryData::Impl::cacheIterators(pwiz::util::BinaryData&) [with T = double]’: /<>/src/pwiz/utility/misc/BinaryData.cpp:470:30: required from here /<>/src/pwiz/utility/misc/BinaryData.cpp:285:16: warning: implicitly-declared ‘constexpr pwiz::util::BinaryData::iterator& pwiz::util::BinaryData::iterator::operator=(const pwiz::util::BinaryData::iterator&)’ is deprecated [-Wdeprecated-copy] 285 | begin_ = iterator(binaryData, true); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.hpp:113:9: note: because ‘pwiz::util::BinaryData::iterator’ has user-provided ‘pwiz::util::BinaryData::iterator::iterator(const pwiz::util::BinaryData::iterator&) [with T = double]’ 113 | iterator(const iterator& rhs) : current_(rhs.current_) {} | ^~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.cpp:286:14: warning: implicitly-declared ‘constexpr pwiz::util::BinaryData::iterator& pwiz::util::BinaryData::iterator::operator=(const pwiz::util::BinaryData::iterator&)’ is deprecated [-Wdeprecated-copy] 286 | end_ = iterator(binaryData, false); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.hpp:113:9: note: because ‘pwiz::util::BinaryData::iterator’ has user-provided ‘pwiz::util::BinaryData::iterator::iterator(const pwiz::util::BinaryData::iterator&) [with T = double]’ 113 | iterator(const iterator& rhs) : current_(rhs.current_) {} | ^~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.cpp:287:17: warning: implicitly-declared ‘constexpr pwiz::util::BinaryData::const_iterator& pwiz::util::BinaryData::const_iterator::operator=(const pwiz::util::BinaryData::const_iterator&)’ is deprecated [-Wdeprecated-copy] 287 | cbegin_ = const_iterator(binaryData, true); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.hpp:79:9: note: because ‘pwiz::util::BinaryData::const_iterator’ has user-provided ‘pwiz::util::BinaryData::const_iterator::const_iterator(const pwiz::util::BinaryData::const_iterator&) [with T = double]’ 79 | const_iterator(const const_iterator& rhs) : current_(rhs.current_) {} | ^~~~~~~~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.cpp:288:15: warning: implicitly-declared ‘constexpr pwiz::util::BinaryData::const_iterator& pwiz::util::BinaryData::const_iterator::operator=(const pwiz::util::BinaryData::const_iterator&)’ is deprecated [-Wdeprecated-copy] 288 | cend_ = const_iterator(binaryData, false); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.hpp:79:9: note: because ‘pwiz::util::BinaryData::const_iterator’ has user-provided ‘pwiz::util::BinaryData::const_iterator::const_iterator(const pwiz::util::BinaryData::const_iterator&) [with T = double]’ 79 | const_iterator(const const_iterator& rhs) : current_(rhs.current_) {} | ^~~~~~~~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.hpp: In instantiation of ‘const T& pwiz::util::BinaryData::at(size_type) const [with T = float; const_reference = const float&; size_type = long unsigned int]’: /<>/src/pwiz/utility/misc/BinaryData.cpp:471:30: required from here /<>/src/pwiz/utility/misc/BinaryData.hpp:256:19: warning: comparison of unsigned expression in ‘< 0’ is always false [-Wtype-limits] 256 | if (index < 0 || index >= size()) | ~~~~~~^~~ /<>/src/pwiz/utility/misc/BinaryData.hpp: In instantiation of ‘T& pwiz::util::BinaryData::at(size_type) [with T = float; reference = float&; size_type = long unsigned int]’: /<>/src/pwiz/utility/misc/BinaryData.cpp:471:30: required from here /<>/src/pwiz/utility/misc/BinaryData.hpp:263:19: warning: comparison of unsigned expression in ‘< 0’ is always false [-Wtype-limits] 263 | if (index < 0 || index >= size()) | ~~~~~~^~~ /<>/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of ‘pwiz::util::BinaryData::Impl::Impl(void*) [with T = float]’: /<>/src/pwiz/utility/misc/BinaryData.cpp:471:30: required from here /<>/src/pwiz/utility/misc/BinaryData.cpp:57:16: warning: unused parameter ‘cliNumericArray’ [-Wunused-parameter] 57 | Impl(void* cliNumericArray) | ~~~~~~^~~~~~~~~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of ‘pwiz::util::BinaryData::Impl& pwiz::util::BinaryData::Impl::operator=(void*) [with T = float]’: /<>/src/pwiz/utility/misc/BinaryData.cpp:471:30: required from here /<>/src/pwiz/utility/misc/BinaryData.cpp:71:27: warning: unused parameter ‘cliNumericArray’ [-Wunused-parameter] 71 | Impl& operator=(void* cliNumericArray) | ~~~~~~^~~~~~~~~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of ‘void pwiz::util::BinaryData::Impl::cacheIterators(pwiz::util::BinaryData&) [with T = float]’: /<>/src/pwiz/utility/misc/BinaryData.cpp:471:30: required from here /<>/src/pwiz/utility/misc/BinaryData.cpp:285:16: warning: implicitly-declared ‘constexpr pwiz::util::BinaryData::iterator& pwiz::util::BinaryData::iterator::operator=(const pwiz::util::BinaryData::iterator&)’ is deprecated [-Wdeprecated-copy] 285 | begin_ = iterator(binaryData, true); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.hpp:113:9: note: because ‘pwiz::util::BinaryData::iterator’ has user-provided ‘pwiz::util::BinaryData::iterator::iterator(const pwiz::util::BinaryData::iterator&) [with T = float]’ 113 | iterator(const iterator& rhs) : current_(rhs.current_) {} | ^~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.cpp:286:14: warning: implicitly-declared ‘constexpr pwiz::util::BinaryData::iterator& pwiz::util::BinaryData::iterator::operator=(const pwiz::util::BinaryData::iterator&)’ is deprecated [-Wdeprecated-copy] 286 | end_ = iterator(binaryData, false); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.hpp:113:9: note: because ‘pwiz::util::BinaryData::iterator’ has user-provided ‘pwiz::util::BinaryData::iterator::iterator(const pwiz::util::BinaryData::iterator&) [with T = float]’ 113 | iterator(const iterator& rhs) : current_(rhs.current_) {} | ^~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.cpp:287:17: warning: implicitly-declared ‘constexpr pwiz::util::BinaryData::const_iterator& pwiz::util::BinaryData::const_iterator::operator=(const pwiz::util::BinaryData::const_iterator&)’ is deprecated [-Wdeprecated-copy] 287 | cbegin_ = const_iterator(binaryData, true); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.hpp:79:9: note: because ‘pwiz::util::BinaryData::const_iterator’ has user-provided ‘pwiz::util::BinaryData::const_iterator::const_iterator(const pwiz::util::BinaryData::const_iterator&) [with T = float]’ 79 | const_iterator(const const_iterator& rhs) : current_(rhs.current_) {} | ^~~~~~~~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.cpp:288:15: warning: implicitly-declared ‘constexpr pwiz::util::BinaryData::const_iterator& pwiz::util::BinaryData::const_iterator::operator=(const pwiz::util::BinaryData::const_iterator&)’ is deprecated [-Wdeprecated-copy] 288 | cend_ = const_iterator(binaryData, false); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.hpp:79:9: note: because ‘pwiz::util::BinaryData::const_iterator’ has user-provided ‘pwiz::util::BinaryData::const_iterator::const_iterator(const pwiz::util::BinaryData::const_iterator&) [with T = float]’ 79 | const_iterator(const const_iterator& rhs) : current_(rhs.current_) {} | ^~~~~~~~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.hpp: In instantiation of ‘const T& pwiz::util::BinaryData::at(size_type) const [with T = long int; const_reference = const long int&; size_type = long unsigned int]’: /<>/src/pwiz/utility/misc/BinaryData.cpp:472:30: required from here /<>/src/pwiz/utility/misc/BinaryData.hpp:256:19: warning: comparison of unsigned expression in ‘< 0’ is always false [-Wtype-limits] 256 | if (index < 0 || index >= size()) | ~~~~~~^~~ /<>/src/pwiz/utility/misc/BinaryData.hpp: In instantiation of ‘T& pwiz::util::BinaryData::at(size_type) [with T = long int; reference = long int&; size_type = long unsigned int]’: /<>/src/pwiz/utility/misc/BinaryData.cpp:472:30: required from here /<>/src/pwiz/utility/misc/BinaryData.hpp:263:19: warning: comparison of unsigned expression in ‘< 0’ is always false [-Wtype-limits] 263 | if (index < 0 || index >= size()) | ~~~~~~^~~ /<>/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of ‘pwiz::util::BinaryData::Impl::Impl(void*) [with T = long int]’: /<>/src/pwiz/utility/misc/BinaryData.cpp:472:30: required from here /<>/src/pwiz/utility/misc/BinaryData.cpp:57:16: warning: unused parameter ‘cliNumericArray’ [-Wunused-parameter] 57 | Impl(void* cliNumericArray) | ~~~~~~^~~~~~~~~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of ‘pwiz::util::BinaryData::Impl& pwiz::util::BinaryData::Impl::operator=(void*) [with T = long int]’: /<>/src/pwiz/utility/misc/BinaryData.cpp:472:30: required from here /<>/src/pwiz/utility/misc/BinaryData.cpp:71:27: warning: unused parameter ‘cliNumericArray’ [-Wunused-parameter] 71 | Impl& operator=(void* cliNumericArray) | ~~~~~~^~~~~~~~~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of ‘void pwiz::util::BinaryData::Impl::cacheIterators(pwiz::util::BinaryData&) [with T = long int]’: /<>/src/pwiz/utility/misc/BinaryData.cpp:472:30: required from here /<>/src/pwiz/utility/misc/BinaryData.cpp:285:16: warning: implicitly-declared ‘constexpr pwiz::util::BinaryData::iterator& pwiz::util::BinaryData::iterator::operator=(const pwiz::util::BinaryData::iterator&)’ is deprecated [-Wdeprecated-copy] 285 | begin_ = iterator(binaryData, true); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.hpp:113:9: note: because ‘pwiz::util::BinaryData::iterator’ has user-provided ‘pwiz::util::BinaryData::iterator::iterator(const pwiz::util::BinaryData::iterator&) [with T = long int]’ 113 | iterator(const iterator& rhs) : current_(rhs.current_) {} | ^~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.cpp:286:14: warning: implicitly-declared ‘constexpr pwiz::util::BinaryData::iterator& pwiz::util::BinaryData::iterator::operator=(const pwiz::util::BinaryData::iterator&)’ is deprecated [-Wdeprecated-copy] 286 | end_ = iterator(binaryData, false); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.hpp:113:9: note: because ‘pwiz::util::BinaryData::iterator’ has user-provided ‘pwiz::util::BinaryData::iterator::iterator(const pwiz::util::BinaryData::iterator&) [with T = long int]’ 113 | iterator(const iterator& rhs) : current_(rhs.current_) {} | ^~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.cpp:287:17: warning: implicitly-declared ‘constexpr pwiz::util::BinaryData::const_iterator& pwiz::util::BinaryData::const_iterator::operator=(const pwiz::util::BinaryData::const_iterator&)’ is deprecated [-Wdeprecated-copy] 287 | cbegin_ = const_iterator(binaryData, true); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.hpp:79:9: note: because ‘pwiz::util::BinaryData::const_iterator’ has user-provided ‘pwiz::util::BinaryData::const_iterator::const_iterator(const pwiz::util::BinaryData::const_iterator&) [with T = long int]’ 79 | const_iterator(const const_iterator& rhs) : current_(rhs.current_) {} | ^~~~~~~~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.cpp:288:15: warning: implicitly-declared ‘constexpr pwiz::util::BinaryData::const_iterator& pwiz::util::BinaryData::const_iterator::operator=(const pwiz::util::BinaryData::const_iterator&)’ is deprecated [-Wdeprecated-copy] 288 | cend_ = const_iterator(binaryData, false); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.hpp:79:9: note: because ‘pwiz::util::BinaryData::const_iterator’ has user-provided ‘pwiz::util::BinaryData::const_iterator::const_iterator(const pwiz::util::BinaryData::const_iterator&) [with T = long int]’ 79 | const_iterator(const const_iterator& rhs) : current_(rhs.current_) {} | ^~~~~~~~~~~~~~ [ 6%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/Base64.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/<>/obj-x86_64-linux-gnu/src -I/<>/src -I/<>/src/boost -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/Base64.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/Base64.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/Base64.cpp.o -c /<>/src/pwiz/utility/misc/Base64.cpp [ 7%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/random_access_compressed_ifstream.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/<>/obj-x86_64-linux-gnu/src -I/<>/src -I/<>/src/boost -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/random_access_compressed_ifstream.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/random_access_compressed_ifstream.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/random_access_compressed_ifstream.cpp.o -c /<>/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp /<>/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp: In member function ‘std::streampos pwiz::util::random_access_compressed_streambuf::my_seekg(std::streampos, std::ios_base::seekdir, std::ios_base::openmode)’: /<>/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp:824:138: warning: unused parameter ‘Mode’ [-Wunused-parameter] 824 | std::streampos random_access_compressed_streambuf::my_seekg(std::streampos offset, std::ios_base::seekdir whence,std::ios_base::openmode Mode) { | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp: In member function ‘std::streampos pwiz::util::chunky_streambuf::my_seekg(boost::iostreams::stream_offset, std::ios_base::seekdir, std::ios_base::openmode)’: /<>/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp:1199:137: warning: unused parameter ‘Mode’ [-Wunused-parameter] 1199 | std::streampos chunky_streambuf::my_seekg(boost::iostreams::stream_offset offset, std::ios_base::seekdir whence,std::ios_base::openmode Mode) { | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~ [ 8%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/Filesystem.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/<>/obj-x86_64-linux-gnu/src -I/<>/src -I/<>/src/boost -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/Filesystem.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/Filesystem.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/Filesystem.cpp.o -c /<>/src/pwiz/utility/misc/Filesystem.cpp /<>/src/pwiz/utility/misc/Filesystem.cpp: In function ‘void pwiz::util::force_close_handles_to_filepath(const std::string&, bool)’: /<>/src/pwiz/utility/misc/Filesystem.cpp:256:71: warning: unused parameter ‘filepath’ [-Wunused-parameter] 256 | PWIZ_API_DECL void force_close_handles_to_filepath(const std::string& filepath, bool closeMemoryMappedSections) noexcept(true) | ~~~~~~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/utility/misc/Filesystem.cpp:256:86: warning: unused parameter ‘closeMemoryMappedSections’ [-Wunused-parameter] 256 | PWIZ_API_DECL void force_close_handles_to_filepath(const std::string& filepath, bool closeMemoryMappedSections) noexcept(true) | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/pwiz/utility/misc/Filesystem.cpp: In function ‘void pwiz::util::check_path_length(const std::string&)’: /<>/src/pwiz/utility/misc/Filesystem.cpp:719:52: warning: unused parameter ‘path’ [-Wunused-parameter] 719 | PWIZ_API_DECL void check_path_length(const string& path) | ~~~~~~~~~~~~~~^~~~ [ 10%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/IntegerSet.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/<>/obj-x86_64-linux-gnu/src -I/<>/src -I/<>/src/boost -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/IntegerSet.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/IntegerSet.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/IntegerSet.cpp.o -c /<>/src/pwiz/utility/misc/IntegerSet.cpp /<>/src/pwiz/utility/misc/IntegerSet.cpp: In member function ‘bool pwiz::util::IntegerSet::Iterator::operator==(const pwiz::util::IntegerSet::Iterator&) const’: /<>/src/pwiz/utility/misc/IntegerSet.cpp:307:63: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] 307 | return (it_!=end_ && that.it_!=that.end_ && it_==that.it_ && value_==that.value_ || | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ [ 11%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/SHA1.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/<>/obj-x86_64-linux-gnu/src -I/<>/src -I/<>/src/boost -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/SHA1.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/SHA1.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/SHA1.cpp.o -c /<>/src/pwiz/utility/misc/SHA1.cpp [ 12%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/SHA1Calculator.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/<>/obj-x86_64-linux-gnu/src -I/<>/src -I/<>/src/boost -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/SHA1Calculator.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/SHA1Calculator.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/SHA1Calculator.cpp.o -c /<>/src/pwiz/utility/misc/SHA1Calculator.cpp [ 13%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/String.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/<>/obj-x86_64-linux-gnu/src -I/<>/src -I/<>/src/boost -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/String.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/String.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/String.cpp.o -c /<>/src/pwiz/utility/misc/String.cpp [ 15%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_MGF.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/<>/obj-x86_64-linux-gnu/src -I/<>/src -I/<>/src/boost -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_MGF.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_MGF.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_MGF.cpp.o -c /<>/src/pwiz/data/msdata/Serializer_MGF.cpp In file included from /<>/src/pwiz/data/msdata/MSData.hpp:29, from /<>/src/pwiz/data/msdata/Serializer_MGF.hpp:27, from /<>/src/pwiz/data/msdata/Serializer_MGF.cpp:25: /<>/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/x86_64-linux-gnu/include/c++/12/bits/stl_algobase.h:65, from /usr/x86_64-linux-gnu/include/c++/12/algorithm:60, from /<>/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/x86_64-linux-gnu/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/x86_64-linux-gnu/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /<>/src/pwiz/data/msdata/Serializer_MGF.hpp:29: /<>/src/pwiz/utility/misc/IterationListener.hpp: In member function ‘virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)’: /<>/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter ‘updateMessage’ [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ [ 16%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/MSNumpress.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/<>/obj-x86_64-linux-gnu/src -I/<>/src -I/<>/src/boost -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/MSNumpress.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/MSNumpress.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/MSNumpress.cpp.o -c /<>/src/pwiz/data/msdata/MSNumpress.cpp /<>/src/pwiz/data/msdata/MSNumpress.cpp: In function ‘void pwiz::msdata::MSNumpress::encodeInt(int, unsigned char*, size_t*)’: /<>/src/pwiz/data/msdata/MSNumpress.cpp:114:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 114 | } else if (init == mask) { | ~~~~~^~~~~~~ In file included from /usr/x86_64-linux-gnu/include/c++/12/iostream:39, from /<>/src/pwiz/data/msdata/MSNumpress.cpp:27: In member function ‘std::basic_ostream<_CharT, _Traits>::__ostream_type& std::basic_ostream<_CharT, _Traits>::operator<<(long long int) [with _CharT = char; _Traits = std::char_traits]’, inlined from ‘size_t pwiz::msdata::MSNumpress::decodeLinear(const unsigned char*, size_t, double*)’ at /<>/src/pwiz/data/msdata/MSNumpress.cpp:404:26: /usr/x86_64-linux-gnu/include/c++/12/ostream:202:25: warning: ‘y’ may be used uninitialized [-Wmaybe-uninitialized] 202 | { return _M_insert(__n); } | ~~~~~~~~~^~~~~ /<>/src/pwiz/data/msdata/MSNumpress.cpp: In function ‘size_t pwiz::msdata::MSNumpress::decodeLinear(const unsigned char*, size_t, double*)’: /<>/src/pwiz/data/msdata/MSNumpress.cpp:347:15: note: ‘y’ was declared here 347 | long long y; | ^ In member function ‘std::basic_ostream<_CharT, _Traits>::__ostream_type& std::basic_ostream<_CharT, _Traits>::operator<<(long long int) [with _CharT = char; _Traits = std::char_traits]’, inlined from ‘size_t pwiz::msdata::MSNumpress::decodeLinear(const unsigned char*, size_t, double*)’ at /<>/src/pwiz/data/msdata/MSNumpress.cpp:403:33: /usr/x86_64-linux-gnu/include/c++/12/ostream:202:25: warning: ‘extrapol’ may be used uninitialized [-Wmaybe-uninitialized] 202 | { return _M_insert(__n); } | ~~~~~~~~~^~~~~ /<>/src/pwiz/data/msdata/MSNumpress.cpp: In function ‘size_t pwiz::msdata::MSNumpress::decodeLinear(const unsigned char*, size_t, double*)’: /<>/src/pwiz/data/msdata/MSNumpress.cpp:346:15: note: ‘extrapol’ was declared here 346 | long long extrapol; | ^~~~~~~~ [ 17%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_MSn.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/<>/obj-x86_64-linux-gnu/src -I/<>/src -I/<>/src/boost -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_MSn.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_MSn.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_MSn.cpp.o -c /<>/src/pwiz/data/msdata/Serializer_MSn.cpp In file included from /<>/src/pwiz/data/msdata/MSData.hpp:29, from /<>/src/pwiz/data/msdata/Serializer_MSn.hpp:26, from /<>/src/pwiz/data/msdata/Serializer_MSn.cpp:25: /<>/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/x86_64-linux-gnu/include/c++/12/bits/stl_algobase.h:65, from /usr/x86_64-linux-gnu/include/c++/12/algorithm:60, from /<>/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/x86_64-linux-gnu/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/x86_64-linux-gnu/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /<>/src/pwiz/data/msdata/Serializer_MSn.hpp:28: /<>/src/pwiz/utility/misc/IterationListener.hpp: In member function ‘virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)’: /<>/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter ‘updateMessage’ [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /<>/src/pwiz/data/msdata/Serializer_MSn.cpp: In member function ‘void pwiz::msdata::Serializer_MSn::write(std::ostream&, const pwiz::msdata::MSData&, const pwiz::util::IterationListenerRegistry*, bool) const’: /<>/src/pwiz/data/msdata/Serializer_MSn.cpp:524:10: warning: unused parameter ‘useWorkerThreads’ [-Wunused-parameter] 524 | bool useWorkerThreads) const | ~~~~~^~~~~~~~~~~~~~~~ [ 18%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumInfo.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/<>/obj-x86_64-linux-gnu/src -I/<>/src -I/<>/src/boost -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumInfo.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumInfo.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumInfo.cpp.o -c /<>/src/pwiz/data/msdata/SpectrumInfo.cpp In file included from /<>/src/pwiz/data/msdata/MSData.hpp:29, from /<>/src/pwiz/data/msdata/SpectrumInfo.hpp:29, from /<>/src/pwiz/data/msdata/SpectrumInfo.cpp:27: /<>/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/x86_64-linux-gnu/include/c++/12/bits/stl_algobase.h:65, from /usr/x86_64-linux-gnu/include/c++/12/algorithm:60, from /<>/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/x86_64-linux-gnu/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/x86_64-linux-gnu/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ [ 20%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/IO.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/<>/obj-x86_64-linux-gnu/src -I/<>/src -I/<>/src/boost -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/IO.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/IO.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/IO.cpp.o -c /<>/src/pwiz/data/msdata/IO.cpp In file included from /<>/src/pwiz/data/msdata/MSData.hpp:29, from /<>/src/pwiz/data/msdata/IO.hpp:29, from /<>/src/pwiz/data/msdata/IO.cpp:26: /<>/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/x86_64-linux-gnu/include/c++/12/bits/stl_algobase.h:65, from /usr/x86_64-linux-gnu/include/c++/12/algorithm:60, from /<>/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/x86_64-linux-gnu/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/x86_64-linux-gnu/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /<>/src/pwiz/data/msdata/IO.hpp:32: /<>/src/pwiz/utility/misc/IterationListener.hpp: In member function ‘virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)’: /<>/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter ‘updateMessage’ [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ In file included from /<>/src/pwiz/data/msdata/IO.cpp:28: /<>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)’: /<>/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter ‘name’ [-Wunused-parameter] 585 | virtual Status processingInstruction(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter ‘data’ [-Wunused-parameter] 586 | const std::string& data, | ~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter ‘position’ [-Wunused-parameter] 587 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)’: /<>/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter ‘name’ [-Wunused-parameter] 589 | virtual Status startElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter ‘attributes’ [-Wunused-parameter] 590 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter ‘position’ [-Wunused-parameter] 591 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)’: /<>/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter ‘name’ [-Wunused-parameter] 593 | virtual Status endElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter ‘position’ [-Wunused-parameter] 594 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)’: /<>/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter ‘text’ [-Wunused-parameter] 596 | virtual Status characters(const SAXParser::saxstring& text, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter ‘position’ [-Wunused-parameter] 597 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/data/msdata/IO.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerCV::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)’: /<>/src/pwiz/data/msdata/IO.cpp:81:47: warning: unused parameter ‘position’ [-Wunused-parameter] 81 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/data/msdata/IO.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerUserParam::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)’: /<>/src/pwiz/data/msdata/IO.cpp:132:47: warning: unused parameter ‘position’ [-Wunused-parameter] 132 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/data/msdata/IO.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerCVParam::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)’: /<>/src/pwiz/data/msdata/IO.cpp:191:47: warning: unused parameter ‘position’ [-Wunused-parameter] 191 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/data/msdata/IO.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerParamContainer::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)’: /<>/src/pwiz/data/msdata/IO.cpp:263:47: warning: unused parameter ‘position’ [-Wunused-parameter] 263 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/data/msdata/IO.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerFileDescription::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)’: /<>/src/pwiz/data/msdata/IO.cpp:500:51: warning: unused parameter ‘attributes’ [-Wunused-parameter] 500 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /<>/src/pwiz/data/msdata/IO.cpp:501:47: warning: unused parameter ‘position’ [-Wunused-parameter] 501 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/data/msdata/IO.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerComponentList::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)’: /<>/src/pwiz/data/msdata/IO.cpp:693:51: warning: unused parameter ‘attributes’ [-Wunused-parameter] 693 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /<>/src/pwiz/data/msdata/IO.cpp:694:47: warning: unused parameter ‘position’ [-Wunused-parameter] 694 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/data/msdata/IO.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerDataProcessing::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)’: /<>/src/pwiz/data/msdata/IO.cpp:966:47: warning: unused parameter ‘position’ [-Wunused-parameter] 966 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/data/msdata/IO.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerScanSettings::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)’: /<>/src/pwiz/data/msdata/IO.cpp:1079:47: warning: unused parameter ‘position’ [-Wunused-parameter] 1079 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/data/msdata/IO.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerProduct::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)’: /<>/src/pwiz/data/msdata/IO.cpp:1355:51: warning: unused parameter ‘attributes’ [-Wunused-parameter] 1355 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /<>/src/pwiz/data/msdata/IO.cpp:1356:47: warning: unused parameter ‘position’ [-Wunused-parameter] 1356 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/data/msdata/IO.cpp: In function ‘void pwiz::msdata::IO::writeBinaryDataArray(pwiz::minimxml::XMLWriter&, const BinaryDataArrayType&, const pwiz::msdata::BinaryDataEncoder::Config&)’: /<>/src/pwiz/data/msdata/IO.cpp:1657:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1657 | if (usedConfig.byteOrder == BinaryDataEncoder::ByteOrder_BigEndian) | ^~ /<>/src/pwiz/data/msdata/IO.cpp:1660:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1660 | bool zlib = false; // Handle numpress+zlib | ^~~~ /<>/src/pwiz/data/msdata/IO.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerSpectrum::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)’: /<>/src/pwiz/data/msdata/IO.cpp:2169:35: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] 2169 | else if (version == 1 && name == "acquisitionList" /* mzML 1.0 */ || name == "scanList") | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/pwiz/data/msdata/IO.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerSpectrumListSimple::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)’: /<>/src/pwiz/data/msdata/IO.cpp:2438:47: warning: unused parameter ‘position’ [-Wunused-parameter] 2438 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/data/msdata/IO.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerChromatogramListSimple::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)’: /<>/src/pwiz/data/msdata/IO.cpp:2539:47: warning: unused parameter ‘position’ [-Wunused-parameter] 2539 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/data/msdata/IO.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerMSData::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)’: /<>/src/pwiz/data/msdata/IO.cpp:2869:31: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] 2869 | else if (version == 1 && name == "acquisitionSettings" /* mzML 1.0 */ || | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/pwiz/data/msdata/IO.cpp:2787:47: warning: unused parameter ‘position’ [-Wunused-parameter] 2787 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ [ 21%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_BTDX.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/<>/obj-x86_64-linux-gnu/src -I/<>/src -I/<>/src/boost -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_BTDX.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_BTDX.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_BTDX.cpp.o -c /<>/src/pwiz/data/msdata/SpectrumList_BTDX.cpp In file included from /<>/src/pwiz/data/msdata/MSData.hpp:29, from /<>/src/pwiz/data/msdata/SpectrumListBase.hpp:28, from /<>/src/pwiz/data/msdata/SpectrumList_BTDX.hpp:30, from /<>/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:26: /<>/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/x86_64-linux-gnu/include/c++/12/bits/stl_algobase.h:65, from /usr/x86_64-linux-gnu/include/c++/12/algorithm:60, from /<>/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/x86_64-linux-gnu/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/x86_64-linux-gnu/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /<>/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:28: /<>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)’: /<>/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter ‘name’ [-Wunused-parameter] 585 | virtual Status processingInstruction(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter ‘data’ [-Wunused-parameter] 586 | const std::string& data, | ~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter ‘position’ [-Wunused-parameter] 587 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)’: /<>/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter ‘name’ [-Wunused-parameter] 589 | virtual Status startElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter ‘attributes’ [-Wunused-parameter] 590 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter ‘position’ [-Wunused-parameter] 591 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)’: /<>/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter ‘name’ [-Wunused-parameter] 593 | virtual Status endElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter ‘position’ [-Wunused-parameter] 594 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)’: /<>/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter ‘text’ [-Wunused-parameter] 596 | virtual Status characters(const SAXParser::saxstring& text, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter ‘position’ [-Wunused-parameter] 597 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/data/msdata/SpectrumList_BTDX.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerPeaks::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)’: /<>/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:121:47: warning: unused parameter ‘position’ [-Wunused-parameter] 121 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/data/msdata/SpectrumList_BTDX.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerPeaks::endElement(const std::string&, pwiz::minimxml::SAXParser::Handler::stream_offset)’: /<>/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:162:45: warning: unused parameter ‘position’ [-Wunused-parameter] 162 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/data/msdata/SpectrumList_BTDX.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexCreator::endElement(const std::string&, pwiz::minimxml::SAXParser::Handler::stream_offset)’: /<>/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:356:45: warning: unused parameter ‘position’ [-Wunused-parameter] 356 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ [ 22%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/ChromatogramList_mzML.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/<>/obj-x86_64-linux-gnu/src -I/<>/src -I/<>/src/boost -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/ChromatogramList_mzML.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/ChromatogramList_mzML.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/ChromatogramList_mzML.cpp.o -c /<>/src/pwiz/data/msdata/ChromatogramList_mzML.cpp In file included from /<>/src/pwiz/data/msdata/MSData.hpp:29, from /<>/src/pwiz/data/msdata/ChromatogramListBase.hpp:28, from /<>/src/pwiz/data/msdata/ChromatogramList_mzML.hpp:29, from /<>/src/pwiz/data/msdata/ChromatogramList_mzML.cpp:26: /<>/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/x86_64-linux-gnu/include/c++/12/bits/stl_algobase.h:65, from /usr/x86_64-linux-gnu/include/c++/12/algorithm:60, from /<>/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/x86_64-linux-gnu/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/x86_64-linux-gnu/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /<>/src/pwiz/data/msdata/IO.hpp:32, from /<>/src/pwiz/data/msdata/ChromatogramList_mzML.cpp:27: /<>/src/pwiz/utility/misc/IterationListener.hpp: In member function ‘virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)’: /<>/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter ‘updateMessage’ [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ In file included from /<>/src/pwiz/data/msdata/ChromatogramList_mzML.cpp:29: /<>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)’: /<>/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter ‘name’ [-Wunused-parameter] 585 | virtual Status processingInstruction(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter ‘data’ [-Wunused-parameter] 586 | const std::string& data, | ~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter ‘position’ [-Wunused-parameter] 587 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)’: /<>/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter ‘name’ [-Wunused-parameter] 589 | virtual Status startElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter ‘attributes’ [-Wunused-parameter] 590 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter ‘position’ [-Wunused-parameter] 591 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)’: /<>/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter ‘name’ [-Wunused-parameter] 593 | virtual Status endElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter ‘position’ [-Wunused-parameter] 594 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)’: /<>/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter ‘text’ [-Wunused-parameter] 596 | virtual Status characters(const SAXParser::saxstring& text, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter ‘position’ [-Wunused-parameter] 597 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ [ 23%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_mzML.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/<>/obj-x86_64-linux-gnu/src -I/<>/src -I/<>/src/boost -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_mzML.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_mzML.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_mzML.cpp.o -c /<>/src/pwiz/data/msdata/SpectrumList_mzML.cpp In file included from /<>/src/pwiz/data/msdata/MSData.hpp:29, from /<>/src/pwiz/data/msdata/SpectrumListBase.hpp:28, from /<>/src/pwiz/data/msdata/SpectrumList_mzML.hpp:29, from /<>/src/pwiz/data/msdata/SpectrumList_mzML.cpp:26: /<>/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/x86_64-linux-gnu/include/c++/12/bits/stl_algobase.h:65, from /usr/x86_64-linux-gnu/include/c++/12/algorithm:60, from /<>/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/x86_64-linux-gnu/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/x86_64-linux-gnu/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /<>/src/pwiz/data/msdata/IO.hpp:32, from /<>/src/pwiz/data/msdata/SpectrumList_mzML.cpp:27: /<>/src/pwiz/utility/misc/IterationListener.hpp: In member function ‘virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)’: /<>/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter ‘updateMessage’ [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ In file included from /<>/src/pwiz/data/msdata/SpectrumList_mzML.cpp:29: /<>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)’: /<>/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter ‘name’ [-Wunused-parameter] 585 | virtual Status processingInstruction(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter ‘data’ [-Wunused-parameter] 586 | const std::string& data, | ~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter ‘position’ [-Wunused-parameter] 587 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)’: /<>/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter ‘name’ [-Wunused-parameter] 589 | virtual Status startElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter ‘attributes’ [-Wunused-parameter] 590 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter ‘position’ [-Wunused-parameter] 591 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)’: /<>/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter ‘name’ [-Wunused-parameter] 593 | virtual Status endElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter ‘position’ [-Wunused-parameter] 594 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)’: /<>/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter ‘text’ [-Wunused-parameter] 596 | virtual Status characters(const SAXParser::saxstring& text, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter ‘position’ [-Wunused-parameter] 597 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /<>/src/pwiz/data/common/ParamTypes.hpp:33, from /<>/src/pwiz/data/msdata/MSData.hpp:30: /usr/include/boost/bind.hpp: At global scope: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ [ 25%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Version.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/<>/obj-x86_64-linux-gnu/src -I/<>/src -I/<>/src/boost -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Version.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Version.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Version.cpp.o -c /<>/src/pwiz/data/msdata/Version.cpp [ 26%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/MSDataFile.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/<>/obj-x86_64-linux-gnu/src -I/<>/src -I/<>/src/boost -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/MSDataFile.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/MSDataFile.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/MSDataFile.cpp.o -c /<>/src/pwiz/data/msdata/MSDataFile.cpp In file included from /<>/src/pwiz/data/msdata/MSData.hpp:29, from /<>/src/pwiz/data/msdata/MSDataFile.hpp:29, from /<>/src/pwiz/data/msdata/MSDataFile.cpp:26: /<>/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/x86_64-linux-gnu/include/c++/12/bits/stl_algobase.h:65, from /usr/x86_64-linux-gnu/include/c++/12/algorithm:60, from /<>/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/x86_64-linux-gnu/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/x86_64-linux-gnu/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /<>/src/pwiz/data/msdata/Reader.hpp:28, from /<>/src/pwiz/data/msdata/MSDataFile.hpp:30: /<>/src/pwiz/utility/misc/IterationListener.hpp: In member function ‘virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)’: /<>/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter ‘updateMessage’ [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ In file included from /<>/src/pwiz/data/msdata/Reader.hpp:29: /<>/src/pwiz/utility/chemistry/MzMobilityWindow.hpp: In member function ‘bool pwiz::chemistry::MzMobilityWindow::mobilityValueInBounds(double) const’: /<>/src/pwiz/utility/chemistry/MzMobilityWindow.hpp:40:59: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] 40 | mobilityBounds.get().first < mobilityValue && mobilityValue < mobilityBounds.get().second; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/src/pwiz/data/msdata/MSDataFile.cpp:35: /<>/src/pwiz/data/msdata/DefaultReaderList.hpp: In member function ‘virtual std::string pwiz::msdata::Reader_MS2::identify(const std::string&, const std::string&) const’: /<>/src/pwiz/data/msdata/DefaultReaderList.hpp:98:53: warning: unused parameter ‘filename’ [-Wunused-parameter] 98 | virtual std::string identify(const std::string& filename, const std::string& head) const { return ""; } | ~~~~~~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/data/msdata/DefaultReaderList.hpp:98:82: warning: unused parameter ‘head’ [-Wunused-parameter] 98 | virtual std::string identify(const std::string& filename, const std::string& head) const { return ""; } | ~~~~~~~~~~~~~~~~~~~^~~~ [ 27%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumListBase.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/<>/obj-x86_64-linux-gnu/src -I/<>/src -I/<>/src/boost -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumListBase.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumListBase.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumListBase.cpp.o -c /<>/src/pwiz/data/msdata/SpectrumListBase.cpp In file included from /<>/src/pwiz/data/msdata/MSData.hpp:29, from /<>/src/pwiz/data/msdata/SpectrumListBase.hpp:28, from /<>/src/pwiz/data/msdata/SpectrumListBase.cpp:25: /<>/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/x86_64-linux-gnu/include/c++/12/bits/stl_algobase.h:65, from /usr/x86_64-linux-gnu/include/c++/12/algorithm:60, from /<>/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/x86_64-linux-gnu/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/x86_64-linux-gnu/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ [ 28%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/BinaryDataEncoder.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/<>/obj-x86_64-linux-gnu/src -I/<>/src -I/<>/src/boost -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/BinaryDataEncoder.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/BinaryDataEncoder.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/BinaryDataEncoder.cpp.o -c /<>/src/pwiz/data/msdata/BinaryDataEncoder.cpp In file included from /<>/src/pwiz/data/msdata/BinaryDataEncoder.hpp:29, from /<>/src/pwiz/data/msdata/BinaryDataEncoder.cpp:26: /<>/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/x86_64-linux-gnu/include/c++/12/bits/stl_algobase.h:65, from /usr/x86_64-linux-gnu/include/c++/12/algorithm:60, from /<>/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/x86_64-linux-gnu/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/x86_64-linux-gnu/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /<>/src/pwiz/data/msdata/BinaryDataEncoder.cpp: In member function ‘void pwiz::msdata::BinaryDataEncoder::Impl::encode(const double*, size_t, std::string&, size_t*)’: /<>/src/pwiz/data/msdata/BinaryDataEncoder.cpp:302:37: warning: ‘byteCount’ may be used uninitialized [-Wmaybe-uninitialized] 302 | filterArray(byteBuffer, byteCount,compressed); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/pwiz/data/msdata/BinaryDataEncoder.cpp:131:12: note: ‘byteCount’ was declared here 131 | size_t byteCount; | ^~~~~~~~~ /<>/src/pwiz/data/msdata/BinaryDataEncoder.cpp:302:37: warning: ‘byteBuffer’ may be used uninitialized [-Wmaybe-uninitialized] 302 | filterArray(byteBuffer, byteCount,compressed); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/pwiz/data/msdata/BinaryDataEncoder.cpp:132:17: note: ‘byteBuffer’ was declared here 132 | const void* byteBuffer; | ^~~~~~~~~~ [ 30%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_mzXML.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/<>/obj-x86_64-linux-gnu/src -I/<>/src -I/<>/src/boost -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_mzXML.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_mzXML.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_mzXML.cpp.o -c /<>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp In file included from /<>/src/pwiz/data/msdata/MSData.hpp:29, from /<>/src/pwiz/data/msdata/SpectrumListBase.hpp:28, from /<>/src/pwiz/data/msdata/SpectrumList_mzXML.hpp:29, from /<>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:25: /<>/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/x86_64-linux-gnu/include/c++/12/bits/stl_algobase.h:65, from /usr/x86_64-linux-gnu/include/c++/12/algorithm:60, from /<>/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/x86_64-linux-gnu/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/x86_64-linux-gnu/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /<>/src/pwiz/data/msdata/IO.hpp:32, from /<>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:26: /<>/src/pwiz/utility/misc/IterationListener.hpp: In member function ‘virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)’: /<>/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter ‘updateMessage’ [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ In file included from /<>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:28: /<>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)’: /<>/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter ‘name’ [-Wunused-parameter] 585 | virtual Status processingInstruction(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter ‘data’ [-Wunused-parameter] 586 | const std::string& data, | ~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter ‘position’ [-Wunused-parameter] 587 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)’: /<>/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter ‘name’ [-Wunused-parameter] 589 | virtual Status startElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter ‘attributes’ [-Wunused-parameter] 590 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter ‘position’ [-Wunused-parameter] 591 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)’: /<>/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter ‘name’ [-Wunused-parameter] 593 | virtual Status endElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter ‘position’ [-Wunused-parameter] 594 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)’: /<>/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter ‘text’ [-Wunused-parameter] 596 | virtual Status characters(const SAXParser::saxstring& text, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter ‘position’ [-Wunused-parameter] 597 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In constructor ‘pwiz::msdata::{anonymous}::SpectrumList_mzXMLImpl::SpectrumList_mzXMLImpl(boost::shared_ptr >, const pwiz::msdata::MSData&, bool)’: /<>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:84:30: warning: catching polymorphic type ‘struct pwiz::msdata::SpectrumList_mzXML::index_not_found’ by value [-Wcatch-value=] 84 | } catch (index_not_found e){ | ^ /<>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerPrecursor::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)’: /<>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:128:47: warning: unused parameter ‘position’ [-Wunused-parameter] 128 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerPrecursor::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)’: /<>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:212:45: warning: unused parameter ‘position’ [-Wunused-parameter] 212 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerPeaks::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)’: /<>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:239:47: warning: unused parameter ‘position’ [-Wunused-parameter] 239 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerPeaks::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)’: /<>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:282:45: warning: unused parameter ‘position’ [-Wunused-parameter] 282 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerPeaks::endElement(const std::string&, pwiz::minimxml::SAXParser::Handler::stream_offset)’: /<>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:302:70: warning: unused parameter ‘position’ [-Wunused-parameter] 302 | virtual Status endElement(const std::string& name, stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexOffset::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)’: /<>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:701:51: warning: unused parameter ‘attributes’ [-Wunused-parameter] 701 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /<>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:702:47: warning: unused parameter ‘position’ [-Wunused-parameter] 702 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexOffset::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)’: /<>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:710:45: warning: unused parameter ‘position’ [-Wunused-parameter] 710 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerOffset::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)’: /<>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:736:47: warning: unused parameter ‘position’ [-Wunused-parameter] 736 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerOffset::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)’: /<>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:754:45: warning: unused parameter ‘position’ [-Wunused-parameter] 754 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndex::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)’: /<>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:778:51: warning: unused parameter ‘attributes’ [-Wunused-parameter] 778 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /<>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:779:47: warning: unused parameter ‘position’ [-Wunused-parameter] 779 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndex::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)’: /<>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:796:59: warning: unused parameter ‘text’ [-Wunused-parameter] 796 | virtual Status characters(const SAXParser::saxstring& text, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:797:45: warning: unused parameter ‘position’ [-Wunused-parameter] 797 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexCreator::endElement(const std::string&, pwiz::minimxml::SAXParser::Handler::stream_offset)’: /<>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:885:45: warning: unused parameter ‘position’ [-Wunused-parameter] 885 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ [ 31%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/MSData.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/<>/obj-x86_64-linux-gnu/src -I/<>/src -I/<>/src/boost -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/MSData.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/MSData.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/MSData.cpp.o -c /<>/src/pwiz/data/msdata/MSData.cpp In file included from /<>/src/pwiz/data/msdata/MSData.hpp:29, from /<>/src/pwiz/data/msdata/MSData.cpp:25: /<>/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/x86_64-linux-gnu/include/c++/12/bits/stl_algobase.h:65, from /usr/x86_64-linux-gnu/include/c++/12/algorithm:60, from /<>/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/x86_64-linux-gnu/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/x86_64-linux-gnu/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /<>/src/pwiz/data/msdata/MSData.cpp: In member function ‘virtual size_t pwiz::msdata::SpectrumList::findAbbreviated(const std::string&, char) const’: /<>/src/pwiz/data/msdata/MSData.cpp:1112:21: warning: comparison of unsigned expression in ‘>= 0’ is always true [-Wtype-limits] 1112 | if ((result >= 0 && result < size()) || s == 0) | ~~~~~~~^~~~ /<>/src/pwiz/data/msdata/MSData.cpp: In member function ‘virtual void pwiz::msdata::SpectrumList::warn_once(const char*) const’: /<>/src/pwiz/data/msdata/MSData.cpp:1160:56: warning: unused parameter ‘msg’ [-Wunused-parameter] 1160 | PWIZ_API_DECL void SpectrumList::warn_once(const char *msg) const | ~~~~~~~~~~~~^~~ /<>/src/pwiz/data/msdata/MSData.cpp: In member function ‘virtual pwiz::msdata::SpectrumPtr pwiz::msdata::SpectrumListSimple::spectrum(size_t, bool) const’: /<>/src/pwiz/data/msdata/MSData.cpp:1204:75: warning: unused parameter ‘getBinaryData’ [-Wunused-parameter] 1204 | PWIZ_API_DECL SpectrumPtr SpectrumListSimple::spectrum(size_t index, bool getBinaryData) const | ~~~~~^~~~~~~~~~~~~ /<>/src/pwiz/data/msdata/MSData.cpp: In member function ‘virtual pwiz::msdata::ChromatogramPtr pwiz::msdata::ChromatogramListSimple::chromatogram(size_t, bool) const’: /<>/src/pwiz/data/msdata/MSData.cpp:1271:87: warning: unused parameter ‘getBinaryData’ [-Wunused-parameter] 1271 | PWIZ_API_DECL ChromatogramPtr ChromatogramListSimple::chromatogram(size_t index, bool getBinaryData) const | ~~~~~^~~~~~~~~~~~~ /<>/src/pwiz/data/msdata/MSData.cpp: In function ‘std::string pwiz::msdata::id::translateNativeIDToScanNumber(pwiz::cv::CVID, const std::string&)’: /<>/src/pwiz/data/msdata/MSData.cpp:578:13: warning: this statement may fall through [-Wimplicit-fallthrough=] 578 | if (id.find("controllerType=0 controllerNumber=1") != 0) | ^~ /<>/src/pwiz/data/msdata/MSData.cpp:583:9: note: here 583 | case MS_Bruker_Agilent_YEP_nativeID_format: | ^~~~ /<>/src/pwiz/data/msdata/MSData.cpp: In member function ‘virtual size_t pwiz::msdata::SpectrumList::findAbbreviated(const std::string&, char) const’: /<>/src/pwiz/data/msdata/MSData.cpp:1115:1: warning: control reaches end of non-void function [-Wreturn-type] 1115 | } | ^ [ 32%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/LegacyAdapter.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/<>/obj-x86_64-linux-gnu/src -I/<>/src -I/<>/src/boost -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/LegacyAdapter.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/LegacyAdapter.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/LegacyAdapter.cpp.o -c /<>/src/pwiz/data/msdata/LegacyAdapter.cpp In file included from /<>/src/pwiz/data/msdata/MSData.hpp:29, from /<>/src/pwiz/data/msdata/LegacyAdapter.hpp:30, from /<>/src/pwiz/data/msdata/LegacyAdapter.cpp:27: /<>/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/x86_64-linux-gnu/include/c++/12/bits/stl_algobase.h:65, from /usr/x86_64-linux-gnu/include/c++/12/algorithm:60, from /<>/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/x86_64-linux-gnu/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/x86_64-linux-gnu/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ [ 33%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Reader.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/<>/obj-x86_64-linux-gnu/src -I/<>/src -I/<>/src/boost -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Reader.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Reader.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Reader.cpp.o -c /<>/src/pwiz/data/msdata/Reader.cpp In file included from /<>/src/pwiz/data/msdata/Reader.hpp:28, from /<>/src/pwiz/data/msdata/Reader.cpp:26: /<>/src/pwiz/utility/misc/IterationListener.hpp: In member function ‘virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)’: /<>/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter ‘updateMessage’ [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ In file included from /<>/src/pwiz/data/msdata/Reader.hpp:29: /<>/src/pwiz/utility/chemistry/MzMobilityWindow.hpp: In member function ‘bool pwiz::chemistry::MzMobilityWindow::mobilityValueInBounds(double) const’: /<>/src/pwiz/utility/chemistry/MzMobilityWindow.hpp:40:59: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] 40 | mobilityBounds.get().first < mobilityValue && mobilityValue < mobilityBounds.get().second; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/src/pwiz/data/msdata/MSData.hpp:29, from /<>/src/pwiz/data/msdata/Reader.hpp:30: /<>/src/pwiz/utility/misc/BinaryData.hpp: At global scope: /<>/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/x86_64-linux-gnu/include/c++/12/bits/stl_algobase.h:65, from /usr/x86_64-linux-gnu/include/c++/12/memory:63, from /usr/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35, from /usr/include/boost/smart_ptr/detail/shared_count.hpp:27, from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, from /usr/include/boost/shared_ptr.hpp:17, from /<>/src/pwiz/utility/misc/IterationListener.hpp:29: /usr/x86_64-linux-gnu/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/x86_64-linux-gnu/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /<>/src/pwiz/data/msdata/Reader.cpp: In member function ‘virtual void pwiz::msdata::Reader::readIds(const std::string&, const std::string&, std::vector >&, const Config&) const’: /<>/src/pwiz/data/msdata/Reader.cpp:76:119: warning: unused parameter ‘config’ [-Wunused-parameter] 76 | PWIZ_API_DECL void Reader::readIds(const string& filename, const string& head, vector& results, const Config& config) const | ~~~~~~~~~~~~~~^~~~~~ [ 35%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_MSn.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/<>/obj-x86_64-linux-gnu/src -I/<>/src -I/<>/src/boost -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_MSn.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_MSn.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_MSn.cpp.o -c /<>/src/pwiz/data/msdata/SpectrumList_MSn.cpp In file included from /<>/src/pwiz/data/msdata/MSData.hpp:29, from /<>/src/pwiz/data/msdata/SpectrumListBase.hpp:28, from /<>/src/pwiz/data/msdata/SpectrumList_MSn.hpp:29, from /<>/src/pwiz/data/msdata/SpectrumList_MSn.cpp:26: /<>/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/x86_64-linux-gnu/include/c++/12/bits/stl_algobase.h:65, from /usr/x86_64-linux-gnu/include/c++/12/algorithm:60, from /<>/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/x86_64-linux-gnu/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/x86_64-linux-gnu/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ [ 36%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_mzML.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/<>/obj-x86_64-linux-gnu/src -I/<>/src -I/<>/src/boost -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_mzML.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_mzML.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_mzML.cpp.o -c /<>/src/pwiz/data/msdata/Serializer_mzML.cpp In file included from /<>/src/pwiz/data/msdata/MSData.hpp:29, from /<>/src/pwiz/data/msdata/Serializer_mzML.hpp:29, from /<>/src/pwiz/data/msdata/Serializer_mzML.cpp:26: /<>/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/x86_64-linux-gnu/include/c++/12/bits/stl_algobase.h:65, from /usr/x86_64-linux-gnu/include/c++/12/algorithm:60, from /<>/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/x86_64-linux-gnu/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/x86_64-linux-gnu/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /<>/src/pwiz/data/msdata/Serializer_mzML.hpp:31: /<>/src/pwiz/utility/misc/IterationListener.hpp: In member function ‘virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)’: /<>/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter ‘updateMessage’ [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ In file included from /<>/src/pwiz/data/msdata/Serializer_mzML.cpp:32: /<>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)’: /<>/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter ‘name’ [-Wunused-parameter] 585 | virtual Status processingInstruction(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter ‘data’ [-Wunused-parameter] 586 | const std::string& data, | ~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter ‘position’ [-Wunused-parameter] 587 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)’: /<>/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter ‘name’ [-Wunused-parameter] 589 | virtual Status startElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter ‘attributes’ [-Wunused-parameter] 590 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter ‘position’ [-Wunused-parameter] 591 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)’: /<>/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter ‘name’ [-Wunused-parameter] 593 | virtual Status endElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter ‘position’ [-Wunused-parameter] 594 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)’: /<>/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter ‘text’ [-Wunused-parameter] 596 | virtual Status characters(const SAXParser::saxstring& text, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter ‘position’ [-Wunused-parameter] 597 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/data/msdata/Serializer_mzML.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::HandlerIndexedMZML::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)’: /<>/src/pwiz/data/msdata/Serializer_mzML.cpp:205:51: warning: unused parameter ‘attributes’ [-Wunused-parameter] 205 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /<>/src/pwiz/data/msdata/Serializer_mzML.cpp:206:47: warning: unused parameter ‘position’ [-Wunused-parameter] 206 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ [ 37%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Index_mzML.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/<>/obj-x86_64-linux-gnu/src -I/<>/src -I/<>/src/boost -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Index_mzML.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Index_mzML.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Index_mzML.cpp.o -c /<>/src/pwiz/data/msdata/Index_mzML.cpp In file included from /<>/src/pwiz/data/msdata/MSData.hpp:29, from /<>/src/pwiz/data/msdata/Index_mzML.hpp:28, from /<>/src/pwiz/data/msdata/Index_mzML.cpp:24: /<>/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/x86_64-linux-gnu/include/c++/12/bits/stl_algobase.h:65, from /usr/x86_64-linux-gnu/include/c++/12/algorithm:60, from /<>/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/x86_64-linux-gnu/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/x86_64-linux-gnu/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /<>/src/pwiz/data/msdata/Index_mzML.cpp:26: /<>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)’: /<>/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter ‘name’ [-Wunused-parameter] 585 | virtual Status processingInstruction(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter ‘data’ [-Wunused-parameter] 586 | const std::string& data, | ~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter ‘position’ [-Wunused-parameter] 587 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)’: /<>/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter ‘name’ [-Wunused-parameter] 589 | virtual Status startElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter ‘attributes’ [-Wunused-parameter] 590 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter ‘position’ [-Wunused-parameter] 591 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)’: /<>/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter ‘name’ [-Wunused-parameter] 593 | virtual Status endElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter ‘position’ [-Wunused-parameter] 594 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)’: /<>/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter ‘text’ [-Wunused-parameter] 596 | virtual Status characters(const SAXParser::saxstring& text, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter ‘position’ [-Wunused-parameter] 597 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ In file included from /<>/src/pwiz/data/msdata/IO.hpp:32, from /<>/src/pwiz/data/msdata/Index_mzML.cpp:28: /<>/src/pwiz/utility/misc/IterationListener.hpp: In member function ‘virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)’: /<>/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter ‘updateMessage’ [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /<>/src/pwiz/data/msdata/Index_mzML.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexListOffset::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)’: /<>/src/pwiz/data/msdata/Index_mzML.cpp:82:51: warning: unused parameter ‘attributes’ [-Wunused-parameter] 82 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /<>/src/pwiz/data/msdata/Index_mzML.cpp:83:47: warning: unused parameter ‘position’ [-Wunused-parameter] 83 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/data/msdata/Index_mzML.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexListOffset::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)’: /<>/src/pwiz/data/msdata/Index_mzML.cpp:91:45: warning: unused parameter ‘position’ [-Wunused-parameter] 91 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/data/msdata/Index_mzML.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerOffset::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)’: /<>/src/pwiz/data/msdata/Index_mzML.cpp:116:47: warning: unused parameter ‘position’ [-Wunused-parameter] 116 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/data/msdata/Index_mzML.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerOffset::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)’: /<>/src/pwiz/data/msdata/Index_mzML.cpp:161:45: warning: unused parameter ‘position’ [-Wunused-parameter] 161 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/data/msdata/Index_mzML.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexList::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)’: /<>/src/pwiz/data/msdata/Index_mzML.cpp:197:47: warning: unused parameter ‘position’ [-Wunused-parameter] 197 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ [ 38%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumWorkerThreads.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/<>/obj-x86_64-linux-gnu/src -I/<>/src -I/<>/src/boost -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumWorkerThreads.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumWorkerThreads.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumWorkerThreads.cpp.o -c /<>/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp In file included from /<>/src/pwiz/data/msdata/MSData.hpp:29, from /<>/src/pwiz/data/msdata/SpectrumWorkerThreads.hpp:26, from /<>/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp:26: /<>/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/x86_64-linux-gnu/include/c++/12/string:45, from /usr/x86_64-linux-gnu/include/c++/12/stdexcept:39, from /<>/src/pwiz/utility/misc/Exception.hpp:28, from /<>/src/pwiz/utility/misc/Std.hpp:28, from /<>/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp:24: /usr/x86_64-linux-gnu/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/x86_64-linux-gnu/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /usr/x86_64-linux-gnu/include/c++/12/vector:64, from /usr/x86_64-linux-gnu/include/c++/12/functional:62, from /usr/include/boost/numeric/conversion/converter_policies.hpp:19, from /usr/include/boost/numeric/conversion/converter.hpp:14, from /usr/include/boost/numeric/conversion/cast.hpp:33, from /usr/include/boost/lexical_cast/detail/converter_numeric.hpp:36, from /usr/include/boost/lexical_cast/try_lexical_convert.hpp:43, from /usr/include/boost/lexical_cast.hpp:32, from /<>/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /<>/src/pwiz/utility/misc/Environment.hpp:24, from /<>/src/pwiz/utility/misc/Std.hpp:29: In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::operator[](size_type) [with _Tp = pwiz::msdata::SpectrumWorkerThreads::Impl::Task; _Alloc = std::allocator]’, inlined from ‘static void pwiz::msdata::SpectrumWorkerThreads::Impl::work(pwiz::msdata::SpectrumWorkerThreads::Impl*, TaskWorker*)’ at /<>/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp:251:43: /usr/x86_64-linux-gnu/include/c++/12/bits/stl_vector.h:1124:41: warning: ‘lruToReset.boost::optional::.boost::optional_detail::tc_optional_base::m_storage’ may be used uninitialized [-Wmaybe-uninitialized] 1124 | return *(this->_M_impl._M_start + __n); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /<>/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp: In static member function ‘static void pwiz::msdata::SpectrumWorkerThreads::Impl::work(pwiz::msdata::SpectrumWorkerThreads::Impl*, TaskWorker*)’: /<>/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp:240:41: note: ‘lruToReset.boost::optional::.boost::optional_detail::tc_optional_base::m_storage’ was declared here 240 | boost::optional lruToReset; | ^~~~~~~~~~ [ 40%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/References.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/<>/obj-x86_64-linux-gnu/src -I/<>/src -I/<>/src/boost -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/References.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/References.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/References.cpp.o -c /<>/src/pwiz/data/msdata/References.cpp In file included from /<>/src/pwiz/data/msdata/MSData.hpp:29, from /<>/src/pwiz/data/msdata/References.hpp:29, from /<>/src/pwiz/data/msdata/References.cpp:25: /<>/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/x86_64-linux-gnu/include/c++/12/bits/stl_algobase.h:65, from /usr/x86_64-linux-gnu/include/c++/12/algorithm:60, from /<>/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/x86_64-linux-gnu/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/x86_64-linux-gnu/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ [ 41%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_MGF.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/<>/obj-x86_64-linux-gnu/src -I/<>/src -I/<>/src/boost -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_MGF.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_MGF.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_MGF.cpp.o -c /<>/src/pwiz/data/msdata/SpectrumList_MGF.cpp In file included from /<>/src/pwiz/data/msdata/MSData.hpp:29, from /<>/src/pwiz/data/msdata/SpectrumListBase.hpp:28, from /<>/src/pwiz/data/msdata/SpectrumList_MGF.hpp:30, from /<>/src/pwiz/data/msdata/SpectrumList_MGF.cpp:26: /<>/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/x86_64-linux-gnu/include/c++/12/bits/stl_algobase.h:65, from /usr/x86_64-linux-gnu/include/c++/12/algorithm:60, from /<>/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/x86_64-linux-gnu/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/x86_64-linux-gnu/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ [ 42%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/DefaultReaderList.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/<>/obj-x86_64-linux-gnu/src -I/<>/src -I/<>/src/boost -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/DefaultReaderList.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/DefaultReaderList.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/DefaultReaderList.cpp.o -c /<>/src/pwiz/data/msdata/DefaultReaderList.cpp In file included from /<>/src/pwiz/data/msdata/DefaultReaderList.cpp:28: /<>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)’: /<>/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter ‘name’ [-Wunused-parameter] 585 | virtual Status processingInstruction(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter ‘data’ [-Wunused-parameter] 586 | const std::string& data, | ~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter ‘position’ [-Wunused-parameter] 587 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)’: /<>/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter ‘name’ [-Wunused-parameter] 589 | virtual Status startElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter ‘attributes’ [-Wunused-parameter] 590 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter ‘position’ [-Wunused-parameter] 591 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)’: /<>/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter ‘name’ [-Wunused-parameter] 593 | virtual Status endElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter ‘position’ [-Wunused-parameter] 594 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)’: /<>/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter ‘text’ [-Wunused-parameter] 596 | virtual Status characters(const SAXParser::saxstring& text, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter ‘position’ [-Wunused-parameter] 597 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ In file included from /<>/src/pwiz/data/msdata/Reader.hpp:28, from /<>/src/pwiz/data/msdata/DefaultReaderList.hpp:29, from /<>/src/pwiz/data/msdata/DefaultReaderList.cpp:29: /<>/src/pwiz/utility/misc/IterationListener.hpp: In member function ‘virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)’: /<>/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter ‘updateMessage’ [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ In file included from /<>/src/pwiz/data/msdata/Reader.hpp:29: /<>/src/pwiz/utility/chemistry/MzMobilityWindow.hpp: In member function ‘bool pwiz::chemistry::MzMobilityWindow::mobilityValueInBounds(double) const’: /<>/src/pwiz/utility/chemistry/MzMobilityWindow.hpp:40:59: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] 40 | mobilityBounds.get().first < mobilityValue && mobilityValue < mobilityBounds.get().second; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/src/pwiz/data/msdata/MSData.hpp:29, from /<>/src/pwiz/data/msdata/Reader.hpp:30: /<>/src/pwiz/utility/misc/BinaryData.hpp: At global scope: /<>/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/x86_64-linux-gnu/include/c++/12/string:45, from /usr/x86_64-linux-gnu/include/c++/12/stdexcept:39, from /<>/src/pwiz/utility/misc/Exception.hpp:28, from /<>/src/pwiz/utility/misc/Std.hpp:28, from /<>/src/pwiz/data/msdata/DefaultReaderList.cpp:26: /usr/x86_64-linux-gnu/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/x86_64-linux-gnu/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /<>/src/pwiz/data/msdata/DefaultReaderList.hpp: In member function ‘virtual std::string pwiz::msdata::Reader_MS2::identify(const std::string&, const std::string&) const’: /<>/src/pwiz/data/msdata/DefaultReaderList.hpp:98:53: warning: unused parameter ‘filename’ [-Wunused-parameter] 98 | virtual std::string identify(const std::string& filename, const std::string& head) const { return ""; } | ~~~~~~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/data/msdata/DefaultReaderList.hpp:98:82: warning: unused parameter ‘head’ [-Wunused-parameter] 98 | virtual std::string identify(const std::string& filename, const std::string& head) const { return ""; } | ~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function ‘virtual std::string pwiz::msdata::Reader_mzML::identify(const std::string&, const std::string&) const’: /<>/src/pwiz/data/msdata/DefaultReaderList.cpp:122:68: warning: unused parameter ‘filename’ [-Wunused-parameter] 122 | PWIZ_API_DECL std::string Reader_mzML::identify(const std::string& filename, const std::string& head) const | ~~~~~~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function ‘virtual void pwiz::msdata::Reader_mzML::read(const std::string&, const std::string&, pwiz::msdata::MSData&, int, const pwiz::msdata::Reader::Config&) const’: /<>/src/pwiz/data/msdata/DefaultReaderList.cpp:129:57: warning: unused parameter ‘head’ [-Wunused-parameter] 129 | const std::string& head, | ~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/data/msdata/DefaultReaderList.cpp:132:52: warning: unused parameter ‘config’ [-Wunused-parameter] 132 | const Config& config) const | ~~~~~~~~~~~~~~^~~~~~ /<>/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function ‘virtual std::string pwiz::msdata::Reader_mzXML::identify(const std::string&, const std::string&) const’: /<>/src/pwiz/data/msdata/DefaultReaderList.cpp:197:69: warning: unused parameter ‘filename’ [-Wunused-parameter] 197 | PWIZ_API_DECL std::string Reader_mzXML::identify(const std::string& filename, const std::string& head) const | ~~~~~~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function ‘virtual void pwiz::msdata::Reader_mzXML::read(const std::string&, const std::string&, pwiz::msdata::MSData&, int, const pwiz::msdata::Reader::Config&) const’: /<>/src/pwiz/data/msdata/DefaultReaderList.cpp:212:58: warning: unused parameter ‘head’ [-Wunused-parameter] 212 | const std::string& head, | ~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/data/msdata/DefaultReaderList.cpp:215:53: warning: unused parameter ‘config’ [-Wunused-parameter] 215 | const Config& config) const | ~~~~~~~~~~~~~~^~~~~~ /<>/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function ‘virtual std::string pwiz::msdata::Reader_MGF::identify(const std::string&, const std::string&) const’: /<>/src/pwiz/data/msdata/DefaultReaderList.cpp:263:86: warning: unused parameter ‘head’ [-Wunused-parameter] 263 | PWIZ_API_DECL std::string Reader_MGF::identify(const string& filename, const string& head) const | ~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function ‘virtual void pwiz::msdata::Reader_MGF::read(const std::string&, const std::string&, pwiz::msdata::MSData&, int, const pwiz::msdata::Reader::Config&) const’: /<>/src/pwiz/data/msdata/DefaultReaderList.cpp:269:51: warning: unused parameter ‘head’ [-Wunused-parameter] 269 | const string& head, | ~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/data/msdata/DefaultReaderList.cpp:272:51: warning: unused parameter ‘config’ [-Wunused-parameter] 272 | const Config& config) const | ~~~~~~~~~~~~~~^~~~~~ /<>/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function ‘virtual void pwiz::msdata::Reader_MGF::read(const std::string&, const std::string&, std::vector >&, const pwiz::msdata::Reader::Config&) const’: /<>/src/pwiz/data/msdata/DefaultReaderList.cpp:292:51: warning: unused parameter ‘config’ [-Wunused-parameter] 292 | const Config& config) const | ~~~~~~~~~~~~~~^~~~~~ /<>/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function ‘virtual std::string pwiz::msdata::Reader_MSn::identify(const std::string&, const std::string&) const’: /<>/src/pwiz/data/msdata/DefaultReaderList.cpp:303:86: warning: unused parameter ‘head’ [-Wunused-parameter] 303 | PWIZ_API_DECL std::string Reader_MSn::identify(const string& filename, const string& head) const | ~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function ‘virtual void pwiz::msdata::Reader_MSn::read(const std::string&, const std::string&, pwiz::msdata::MSData&, int, const pwiz::msdata::Reader::Config&) const’: /<>/src/pwiz/data/msdata/DefaultReaderList.cpp:313:51: warning: unused parameter ‘head’ [-Wunused-parameter] 313 | const string& head, | ~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/data/msdata/DefaultReaderList.cpp:316:51: warning: unused parameter ‘config’ [-Wunused-parameter] 316 | const Config& config) const | ~~~~~~~~~~~~~~^~~~~~ /<>/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function ‘virtual void pwiz::msdata::Reader_MSn::read(const std::string&, const std::string&, std::vector >&, const pwiz::msdata::Reader::Config&) const’: /<>/src/pwiz/data/msdata/DefaultReaderList.cpp:349:51: warning: unused parameter ‘config’ [-Wunused-parameter] 349 | const Config& config) const | ~~~~~~~~~~~~~~^~~~~~ /<>/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function ‘virtual std::string pwiz::msdata::Reader_BTDX::identify(const std::string&, const std::string&) const’: /<>/src/pwiz/data/msdata/DefaultReaderList.cpp:360:63: warning: unused parameter ‘filename’ [-Wunused-parameter] 360 | PWIZ_API_DECL std::string Reader_BTDX::identify(const string& filename, const string& head) const | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function ‘virtual void pwiz::msdata::Reader_BTDX::read(const std::string&, const std::string&, pwiz::msdata::MSData&, int, const pwiz::msdata::Reader::Config&) const’: /<>/src/pwiz/data/msdata/DefaultReaderList.cpp:376:52: warning: unused parameter ‘head’ [-Wunused-parameter] 376 | const string& head, | ~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/data/msdata/DefaultReaderList.cpp:379:52: warning: unused parameter ‘config’ [-Wunused-parameter] 379 | const Config& config) const | ~~~~~~~~~~~~~~^~~~~~ /<>/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function ‘virtual void pwiz::msdata::Reader_BTDX::read(const std::string&, const std::string&, std::vector >&, const pwiz::msdata::Reader::Config&) const’: /<>/src/pwiz/data/msdata/DefaultReaderList.cpp:406:52: warning: unused parameter ‘config’ [-Wunused-parameter] 406 | const Config& config) const | ~~~~~~~~~~~~~~^~~~~~ /<>/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function ‘virtual std::string pwiz::msdata::Reader_mz5::identify(const std::string&, const std::string&) const’: /<>/src/pwiz/data/msdata/DefaultReaderList.cpp:425:62: warning: unused parameter ‘filename’ [-Wunused-parameter] 425 | PWIZ_API_DECL std::string Reader_mz5::identify(const string& filename, const string& head) const | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function ‘virtual void pwiz::msdata::Reader_mz5::read(const std::string&, const std::string&, pwiz::msdata::MSData&, int, const pwiz::msdata::Reader::Config&) const’: /<>/src/pwiz/data/msdata/DefaultReaderList.cpp:458:51: warning: unused parameter ‘filename’ [-Wunused-parameter] 458 | PWIZ_API_DECL void Reader_mz5::read(const string& filename, | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/data/msdata/DefaultReaderList.cpp:459:51: warning: unused parameter ‘head’ [-Wunused-parameter] 459 | const string& head, | ~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/data/msdata/DefaultReaderList.cpp:460:45: warning: unused parameter ‘result’ [-Wunused-parameter] 460 | MSData& result, | ~~~~~~~~^~~~~~ /<>/src/pwiz/data/msdata/DefaultReaderList.cpp:461:41: warning: unused parameter ‘runIndex’ [-Wunused-parameter] 461 | int runIndex, | ~~~~^~~~~~~~ /<>/src/pwiz/data/msdata/DefaultReaderList.cpp:462:51: warning: unused parameter ‘config’ [-Wunused-parameter] 462 | const Config& config) const | ~~~~~~~~~~~~~~^~~~~~ /<>/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function ‘virtual void pwiz::msdata::Reader_mz5::read(const std::string&, const std::string&, std::vector >&, const pwiz::msdata::Reader::Config&) const’: /<>/src/pwiz/data/msdata/DefaultReaderList.cpp:484:51: warning: unused parameter ‘config’ [-Wunused-parameter] 484 | const Config& config) const | ~~~~~~~~~~~~~~^~~~~~ [ 43%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_mzXML.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/<>/obj-x86_64-linux-gnu/src -I/<>/src -I/<>/src/boost -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_mzXML.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_mzXML.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_mzXML.cpp.o -c /<>/src/pwiz/data/msdata/Serializer_mzXML.cpp In file included from /<>/src/pwiz/data/msdata/MSData.hpp:29, from /<>/src/pwiz/data/msdata/Serializer_mzXML.hpp:29, from /<>/src/pwiz/data/msdata/Serializer_mzXML.cpp:25: /<>/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/x86_64-linux-gnu/include/c++/12/bits/stl_algobase.h:65, from /usr/x86_64-linux-gnu/include/c++/12/algorithm:60, from /<>/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/x86_64-linux-gnu/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/x86_64-linux-gnu/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /<>/src/pwiz/data/msdata/Serializer_mzXML.hpp:31: /<>/src/pwiz/utility/misc/IterationListener.hpp: In member function ‘virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)’: /<>/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter ‘updateMessage’ [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ In file included from /<>/src/pwiz/data/msdata/Serializer_mzXML.cpp:32: /<>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)’: /<>/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter ‘name’ [-Wunused-parameter] 585 | virtual Status processingInstruction(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter ‘data’ [-Wunused-parameter] 586 | const std::string& data, | ~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter ‘position’ [-Wunused-parameter] 587 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)’: /<>/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter ‘name’ [-Wunused-parameter] 589 | virtual Status startElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter ‘attributes’ [-Wunused-parameter] 590 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter ‘position’ [-Wunused-parameter] 591 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)’: /<>/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter ‘name’ [-Wunused-parameter] 593 | virtual Status endElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter ‘position’ [-Wunused-parameter] 594 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)’: /<>/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter ‘text’ [-Wunused-parameter] 596 | virtual Status characters(const SAXParser::saxstring& text, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter ‘position’ [-Wunused-parameter] 597 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/data/msdata/Serializer_mzXML.cpp: In function ‘std::vector pwiz::msdata::{anonymous}::getPrecursorInfo(const pwiz::msdata::Spectrum&, pwiz::msdata::SpectrumListPtr, pwiz::cv::CVID)’: /<>/src/pwiz/data/msdata/Serializer_mzXML.cpp:421:62: warning: unused parameter ‘spectrumListPtr’ [-Wunused-parameter] 421 | const SpectrumListPtr spectrumListPtr, | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/src/pwiz/data/msdata/Serializer_mzXML.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerScanFileContent::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)’: /<>/src/pwiz/data/msdata/Serializer_mzXML.cpp:976:47: warning: unused parameter ‘position’ [-Wunused-parameter] 976 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/data/msdata/Serializer_mzXML.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::Handler_msInstrument::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)’: /<>/src/pwiz/data/msdata/Serializer_mzXML.cpp:1105:47: warning: unused parameter ‘position’ [-Wunused-parameter] 1105 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/data/msdata/Serializer_mzXML.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::Handler_msInstrument::endElement(const std::string&, pwiz::minimxml::SAXParser::Handler::stream_offset)’: /<>/src/pwiz/data/msdata/Serializer_mzXML.cpp:1186:45: warning: unused parameter ‘position’ [-Wunused-parameter] 1186 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/data/msdata/Serializer_mzXML.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::Handler_dataProcessing::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)’: /<>/src/pwiz/data/msdata/Serializer_mzXML.cpp:1234:47: warning: unused parameter ‘position’ [-Wunused-parameter] 1234 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/data/msdata/Serializer_mzXML.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::Handler_mzXML::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)’: /<>/src/pwiz/data/msdata/Serializer_mzXML.cpp:1302:47: warning: unused parameter ‘position’ [-Wunused-parameter] 1302 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ [ 45%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/common/ParamTypes.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/<>/obj-x86_64-linux-gnu/src -I/<>/src -I/<>/src/boost -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/common/ParamTypes.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/common/ParamTypes.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/common/ParamTypes.cpp.o -c /<>/src/pwiz/data/common/ParamTypes.cpp [ 46%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/common/cv.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/<>/obj-x86_64-linux-gnu/src -I/<>/src -I/<>/src/boost -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/common/cv.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/common/cv.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/common/cv.cpp.o -c /<>/src/pwiz/data/common/cv.cpp In file included from /<>/src/pwiz/data/common/cv.cpp:25067: /<>/src/pwiz/data/common/cv.inl: In function ‘const pwiz::cv::CVTermInfo& pwiz::cv::cvTermInfo(const char*)’: /<>/src/pwiz/data/common/cv.inl:102:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const size_t’ {aka ‘const long unsigned int’} [-Wsign-compare] 102 | for (int o=0;o>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/<>/obj-x86_64-linux-gnu/src -I/<>/src -I/<>/src/boost -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/common/CVTranslator.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/common/CVTranslator.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/common/CVTranslator.cpp.o -c /<>/src/pwiz/data/common/CVTranslator.cpp /<>/src/pwiz/data/common/CVTranslator.cpp: In function ‘bool pwiz::data::shouldIgnore(const std::string&, pwiz::cv::CVID, pwiz::cv::CVID)’: /<>/src/pwiz/data/common/CVTranslator.cpp:145:53: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] 145 | return (key=="unit_" && value==MS_unit_OBSOLETE && cvid==UO_unit || | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /<>/src/pwiz/data/common/CVTranslator.cpp:147:40: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] 147 | key=="pi_" && value==MS_PI && cvid==MS_pI || // MS_pI==isoelectric point | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /<>/src/pwiz/data/common/CVTranslator.cpp:148:40: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] 148 | key=="de_" && value==MS_DE && cvid==1001274 || // conflict between 1000246 and 1001274 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /<>/src/pwiz/data/common/CVTranslator.cpp: In function ‘bool pwiz::data::shouldReplace(const std::string&, pwiz::cv::CVID, pwiz::cv::CVID)’: /<>/src/pwiz/data/common/CVTranslator.cpp:153:34: warning: unused parameter ‘key’ [-Wunused-parameter] 153 | bool shouldReplace(const string& key, CVID value, CVID cvid) | ~~~~~~~~~~~~~~^~~ /<>/src/pwiz/data/common/CVTranslator.cpp:153:44: warning: unused parameter ‘value’ [-Wunused-parameter] 153 | bool shouldReplace(const string& key, CVID value, CVID cvid) | ~~~~~^~~~~ /<>/src/pwiz/data/common/CVTranslator.cpp:153:56: warning: unused parameter ‘cvid’ [-Wunused-parameter] 153 | bool shouldReplace(const string& key, CVID value, CVID cvid) | ~~~~~^~~~ [ 48%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/common/diff_std.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/<>/obj-x86_64-linux-gnu/src -I/<>/src -I/<>/src/boost -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/common/diff_std.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/common/diff_std.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/common/diff_std.cpp.o -c /<>/src/pwiz/data/common/diff_std.cpp /<>/src/pwiz/data/common/diff_std.cpp: In function ‘void pwiz::data::diff_impl::diff(const std::string&, const std::string&, std::string&, std::string&, const pwiz::data::BaseDiffConfig&)’: /<>/src/pwiz/data/common/diff_std.cpp:40:33: warning: unused parameter ‘config’ [-Wunused-parameter] 40 | const BaseDiffConfig& config) | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /<>/src/pwiz/data/common/diff_std.cpp: In function ‘void pwiz::data::diff_impl::diff(const boost::logic::tribool&, const boost::logic::tribool&, boost::logic::tribool&, boost::logic::tribool&, const pwiz::data::BaseDiffConfig&)’: /<>/src/pwiz/data/common/diff_std.cpp:88:33: warning: unused parameter ‘config’ [-Wunused-parameter] 88 | const BaseDiffConfig& config) | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /<>/src/pwiz/data/common/diff_std.cpp: In function ‘void pwiz::data::diff_impl::diff(pwiz::cv::CVID, pwiz::cv::CVID, pwiz::cv::CVID&, pwiz::cv::CVID&, const pwiz::data::BaseDiffConfig&)’: /<>/src/pwiz/data/common/diff_std.cpp:124:33: warning: unused parameter ‘config’ [-Wunused-parameter] 124 | const BaseDiffConfig& config) | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~ [ 50%] Linking CXX static library libpwizlite.a cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/cmake -P CMakeFiles/pwizlite-static.dir/cmake_clean_target.cmake cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/pwizlite-static.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-ar qc libpwizlite.a "CMakeFiles/pwizlite-static.dir/pwiz/utility/minimxml/XMLWriter.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/utility/minimxml/SAXParser.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/IterationListener.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/BinaryData.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/Base64.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/random_access_compressed_ifstream.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/Filesystem.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/IntegerSet.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/SHA1.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/SHA1Calculator.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/String.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_MGF.cpp.o" 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"CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Reader.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_MSn.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_mzML.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Index_mzML.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumWorkerThreads.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/References.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_MGF.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/DefaultReaderList.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_mzXML.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/common/ParamTypes.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/common/cv.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/common/CVTranslator.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/common/diff_std.cpp.o" /usr/bin/x86_64-linux-gnu-ranlib libpwizlite.a make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 50%] Built target pwizlite-static make -f src/CMakeFiles/pwizlite-shared.dir/build.make src/CMakeFiles/pwizlite-shared.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/src /<>/obj-x86_64-linux-gnu/src/CMakeFiles/pwizlite-shared.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f src/CMakeFiles/pwizlite-shared.dir/build.make src/CMakeFiles/pwizlite-shared.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 51%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/minimxml/XMLWriter.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/<>/obj-x86_64-linux-gnu/src -I/<>/src -I/<>/src/boost -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/minimxml/XMLWriter.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/utility/minimxml/XMLWriter.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/utility/minimxml/XMLWriter.cpp.o -c /<>/src/pwiz/utility/minimxml/XMLWriter.cpp [ 52%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/minimxml/SAXParser.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/<>/obj-x86_64-linux-gnu/src -I/<>/src -I/<>/src/boost -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/minimxml/SAXParser.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/utility/minimxml/SAXParser.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/utility/minimxml/SAXParser.cpp.o -c /<>/src/pwiz/utility/minimxml/SAXParser.cpp In file included from /<>/src/pwiz/utility/minimxml/SAXParser.cpp:28: /<>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)’: /<>/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter ‘name’ [-Wunused-parameter] 585 | virtual Status processingInstruction(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter ‘data’ [-Wunused-parameter] 586 | const std::string& data, | ~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter ‘position’ [-Wunused-parameter] 587 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)’: /<>/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter ‘name’ [-Wunused-parameter] 589 | virtual Status startElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter ‘attributes’ [-Wunused-parameter] 590 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter ‘position’ [-Wunused-parameter] 591 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)’: /<>/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter ‘name’ [-Wunused-parameter] 593 | virtual Status endElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter ‘position’ [-Wunused-parameter] 594 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)’: /<>/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter ‘text’ [-Wunused-parameter] 596 | virtual Status characters(const SAXParser::saxstring& text, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter ‘position’ [-Wunused-parameter] 597 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/utility/minimxml/SAXParser.cpp: In function ‘void pwiz::minimxml::SAXParser::parse(std::istream&, Handler&)’: /<>/src/pwiz/utility/minimxml/SAXParser.cpp:543:61: warning: offset ‘1’ outside bounds of constant string [-Warray-bounds] 543 | Handler::Status status = wrangler.endElement(buffer.c_str()+1, position); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/pwiz/utility/minimxml/SAXParser.cpp:549:17: warning: ‘inCDATA’ may be used uninitialized [-Wmaybe-uninitialized] 549 | if (inCDATA) | ^~ /<>/src/pwiz/utility/minimxml/SAXParser.cpp:501:14: note: ‘inCDATA’ was declared here 501 | bool inCDATA; | ^~~~~~~ [ 53%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/IterationListener.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/<>/obj-x86_64-linux-gnu/src -I/<>/src -I/<>/src/boost -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/IterationListener.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/IterationListener.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/IterationListener.cpp.o -c /<>/src/pwiz/utility/misc/IterationListener.cpp In file included from /<>/src/pwiz/utility/misc/IterationListener.cpp:27: /<>/src/pwiz/utility/misc/IterationListener.hpp: In member function ‘virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)’: /<>/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter ‘updateMessage’ [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ [ 55%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/BinaryData.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/<>/obj-x86_64-linux-gnu/src -I/<>/src -I/<>/src/boost -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/BinaryData.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/BinaryData.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/BinaryData.cpp.o -c /<>/src/pwiz/utility/misc/BinaryData.cpp In file included from /<>/src/pwiz/utility/misc/BinaryData.cpp:24: /<>/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/x86_64-linux-gnu/include/c++/12/bits/stl_algobase.h:65, from /usr/x86_64-linux-gnu/include/c++/12/algorithm:60, from /<>/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/x86_64-linux-gnu/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/x86_64-linux-gnu/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.hpp: In instantiation of ‘const T& pwiz::util::BinaryData::at(size_type) const [with T = double; const_reference = const double&; size_type = long unsigned int]’: /<>/src/pwiz/utility/misc/BinaryData.cpp:470:30: required from here /<>/src/pwiz/utility/misc/BinaryData.hpp:256:19: warning: comparison of unsigned expression in ‘< 0’ is always false [-Wtype-limits] 256 | if (index < 0 || index >= size()) | ~~~~~~^~~ /<>/src/pwiz/utility/misc/BinaryData.hpp: In instantiation of ‘T& pwiz::util::BinaryData::at(size_type) [with T = double; reference = double&; size_type = long unsigned int]’: /<>/src/pwiz/utility/misc/BinaryData.cpp:470:30: required from here /<>/src/pwiz/utility/misc/BinaryData.hpp:263:19: warning: comparison of unsigned expression in ‘< 0’ is always false [-Wtype-limits] 263 | if (index < 0 || index >= size()) | ~~~~~~^~~ /<>/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of ‘pwiz::util::BinaryData::Impl::Impl(void*) [with T = double]’: /<>/src/pwiz/utility/misc/BinaryData.cpp:470:30: required from here /<>/src/pwiz/utility/misc/BinaryData.cpp:57:16: warning: unused parameter ‘cliNumericArray’ [-Wunused-parameter] 57 | Impl(void* cliNumericArray) | ~~~~~~^~~~~~~~~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of ‘pwiz::util::BinaryData::Impl& pwiz::util::BinaryData::Impl::operator=(void*) [with T = double]’: /<>/src/pwiz/utility/misc/BinaryData.cpp:470:30: required from here /<>/src/pwiz/utility/misc/BinaryData.cpp:71:27: warning: unused parameter ‘cliNumericArray’ [-Wunused-parameter] 71 | Impl& operator=(void* cliNumericArray) | ~~~~~~^~~~~~~~~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of ‘void pwiz::util::BinaryData::Impl::cacheIterators(pwiz::util::BinaryData&) [with T = double]’: /<>/src/pwiz/utility/misc/BinaryData.cpp:470:30: required from here /<>/src/pwiz/utility/misc/BinaryData.cpp:285:16: warning: implicitly-declared ‘constexpr pwiz::util::BinaryData::iterator& pwiz::util::BinaryData::iterator::operator=(const pwiz::util::BinaryData::iterator&)’ is deprecated [-Wdeprecated-copy] 285 | begin_ = iterator(binaryData, true); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.hpp:113:9: note: because ‘pwiz::util::BinaryData::iterator’ has user-provided ‘pwiz::util::BinaryData::iterator::iterator(const pwiz::util::BinaryData::iterator&) [with T = double]’ 113 | iterator(const iterator& rhs) : current_(rhs.current_) {} | ^~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.cpp:286:14: warning: implicitly-declared ‘constexpr pwiz::util::BinaryData::iterator& pwiz::util::BinaryData::iterator::operator=(const pwiz::util::BinaryData::iterator&)’ is deprecated [-Wdeprecated-copy] 286 | end_ = iterator(binaryData, false); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.hpp:113:9: note: because ‘pwiz::util::BinaryData::iterator’ has user-provided ‘pwiz::util::BinaryData::iterator::iterator(const pwiz::util::BinaryData::iterator&) [with T = double]’ 113 | iterator(const iterator& rhs) : current_(rhs.current_) {} | ^~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.cpp:287:17: warning: implicitly-declared ‘constexpr pwiz::util::BinaryData::const_iterator& pwiz::util::BinaryData::const_iterator::operator=(const pwiz::util::BinaryData::const_iterator&)’ is deprecated [-Wdeprecated-copy] 287 | cbegin_ = const_iterator(binaryData, true); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.hpp:79:9: note: because ‘pwiz::util::BinaryData::const_iterator’ has user-provided ‘pwiz::util::BinaryData::const_iterator::const_iterator(const pwiz::util::BinaryData::const_iterator&) [with T = double]’ 79 | const_iterator(const const_iterator& rhs) : current_(rhs.current_) {} | ^~~~~~~~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.cpp:288:15: warning: implicitly-declared ‘constexpr pwiz::util::BinaryData::const_iterator& pwiz::util::BinaryData::const_iterator::operator=(const pwiz::util::BinaryData::const_iterator&)’ is deprecated [-Wdeprecated-copy] 288 | cend_ = const_iterator(binaryData, false); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.hpp:79:9: note: because ‘pwiz::util::BinaryData::const_iterator’ has user-provided ‘pwiz::util::BinaryData::const_iterator::const_iterator(const pwiz::util::BinaryData::const_iterator&) [with T = double]’ 79 | const_iterator(const const_iterator& rhs) : current_(rhs.current_) {} | ^~~~~~~~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.hpp: In instantiation of ‘const T& pwiz::util::BinaryData::at(size_type) const [with T = float; const_reference = const float&; size_type = long unsigned int]’: /<>/src/pwiz/utility/misc/BinaryData.cpp:471:30: required from here /<>/src/pwiz/utility/misc/BinaryData.hpp:256:19: warning: comparison of unsigned expression in ‘< 0’ is always false [-Wtype-limits] 256 | if (index < 0 || index >= size()) | ~~~~~~^~~ /<>/src/pwiz/utility/misc/BinaryData.hpp: In instantiation of ‘T& pwiz::util::BinaryData::at(size_type) [with T = float; reference = float&; size_type = long unsigned int]’: /<>/src/pwiz/utility/misc/BinaryData.cpp:471:30: required from here /<>/src/pwiz/utility/misc/BinaryData.hpp:263:19: warning: comparison of unsigned expression in ‘< 0’ is always false [-Wtype-limits] 263 | if (index < 0 || index >= size()) | ~~~~~~^~~ /<>/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of ‘pwiz::util::BinaryData::Impl::Impl(void*) [with T = float]’: /<>/src/pwiz/utility/misc/BinaryData.cpp:471:30: required from here /<>/src/pwiz/utility/misc/BinaryData.cpp:57:16: warning: unused parameter ‘cliNumericArray’ [-Wunused-parameter] 57 | Impl(void* cliNumericArray) | ~~~~~~^~~~~~~~~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of ‘pwiz::util::BinaryData::Impl& pwiz::util::BinaryData::Impl::operator=(void*) [with T = float]’: /<>/src/pwiz/utility/misc/BinaryData.cpp:471:30: required from here /<>/src/pwiz/utility/misc/BinaryData.cpp:71:27: warning: unused parameter ‘cliNumericArray’ [-Wunused-parameter] 71 | Impl& operator=(void* cliNumericArray) | ~~~~~~^~~~~~~~~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of ‘void pwiz::util::BinaryData::Impl::cacheIterators(pwiz::util::BinaryData&) [with T = float]’: /<>/src/pwiz/utility/misc/BinaryData.cpp:471:30: required from here /<>/src/pwiz/utility/misc/BinaryData.cpp:285:16: warning: implicitly-declared ‘constexpr pwiz::util::BinaryData::iterator& pwiz::util::BinaryData::iterator::operator=(const pwiz::util::BinaryData::iterator&)’ is deprecated [-Wdeprecated-copy] 285 | begin_ = iterator(binaryData, true); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.hpp:113:9: note: because ‘pwiz::util::BinaryData::iterator’ has user-provided ‘pwiz::util::BinaryData::iterator::iterator(const pwiz::util::BinaryData::iterator&) [with T = float]’ 113 | iterator(const iterator& rhs) : current_(rhs.current_) {} | ^~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.cpp:286:14: warning: implicitly-declared ‘constexpr pwiz::util::BinaryData::iterator& pwiz::util::BinaryData::iterator::operator=(const pwiz::util::BinaryData::iterator&)’ is deprecated [-Wdeprecated-copy] 286 | end_ = iterator(binaryData, false); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.hpp:113:9: note: because ‘pwiz::util::BinaryData::iterator’ has user-provided ‘pwiz::util::BinaryData::iterator::iterator(const pwiz::util::BinaryData::iterator&) [with T = float]’ 113 | iterator(const iterator& rhs) : current_(rhs.current_) {} | ^~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.cpp:287:17: warning: implicitly-declared ‘constexpr pwiz::util::BinaryData::const_iterator& pwiz::util::BinaryData::const_iterator::operator=(const pwiz::util::BinaryData::const_iterator&)’ is deprecated [-Wdeprecated-copy] 287 | cbegin_ = const_iterator(binaryData, true); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.hpp:79:9: note: because ‘pwiz::util::BinaryData::const_iterator’ has user-provided ‘pwiz::util::BinaryData::const_iterator::const_iterator(const pwiz::util::BinaryData::const_iterator&) [with T = float]’ 79 | const_iterator(const const_iterator& rhs) : current_(rhs.current_) {} | ^~~~~~~~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.cpp:288:15: warning: implicitly-declared ‘constexpr pwiz::util::BinaryData::const_iterator& pwiz::util::BinaryData::const_iterator::operator=(const pwiz::util::BinaryData::const_iterator&)’ is deprecated [-Wdeprecated-copy] 288 | cend_ = const_iterator(binaryData, false); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.hpp:79:9: note: because ‘pwiz::util::BinaryData::const_iterator’ has user-provided ‘pwiz::util::BinaryData::const_iterator::const_iterator(const pwiz::util::BinaryData::const_iterator&) [with T = float]’ 79 | const_iterator(const const_iterator& rhs) : current_(rhs.current_) {} | ^~~~~~~~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.hpp: In instantiation of ‘const T& pwiz::util::BinaryData::at(size_type) const [with T = long int; const_reference = const long int&; size_type = long unsigned int]’: /<>/src/pwiz/utility/misc/BinaryData.cpp:472:30: required from here /<>/src/pwiz/utility/misc/BinaryData.hpp:256:19: warning: comparison of unsigned expression in ‘< 0’ is always false [-Wtype-limits] 256 | if (index < 0 || index >= size()) | ~~~~~~^~~ /<>/src/pwiz/utility/misc/BinaryData.hpp: In instantiation of ‘T& pwiz::util::BinaryData::at(size_type) [with T = long int; reference = long int&; size_type = long unsigned int]’: /<>/src/pwiz/utility/misc/BinaryData.cpp:472:30: required from here /<>/src/pwiz/utility/misc/BinaryData.hpp:263:19: warning: comparison of unsigned expression in ‘< 0’ is always false [-Wtype-limits] 263 | if (index < 0 || index >= size()) | ~~~~~~^~~ /<>/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of ‘pwiz::util::BinaryData::Impl::Impl(void*) [with T = long int]’: /<>/src/pwiz/utility/misc/BinaryData.cpp:472:30: required from here /<>/src/pwiz/utility/misc/BinaryData.cpp:57:16: warning: unused parameter ‘cliNumericArray’ [-Wunused-parameter] 57 | Impl(void* cliNumericArray) | ~~~~~~^~~~~~~~~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of ‘pwiz::util::BinaryData::Impl& pwiz::util::BinaryData::Impl::operator=(void*) [with T = long int]’: /<>/src/pwiz/utility/misc/BinaryData.cpp:472:30: required from here /<>/src/pwiz/utility/misc/BinaryData.cpp:71:27: warning: unused parameter ‘cliNumericArray’ [-Wunused-parameter] 71 | Impl& operator=(void* cliNumericArray) | ~~~~~~^~~~~~~~~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of ‘void pwiz::util::BinaryData::Impl::cacheIterators(pwiz::util::BinaryData&) [with T = long int]’: /<>/src/pwiz/utility/misc/BinaryData.cpp:472:30: required from here /<>/src/pwiz/utility/misc/BinaryData.cpp:285:16: warning: implicitly-declared ‘constexpr pwiz::util::BinaryData::iterator& pwiz::util::BinaryData::iterator::operator=(const pwiz::util::BinaryData::iterator&)’ is deprecated [-Wdeprecated-copy] 285 | begin_ = iterator(binaryData, true); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.hpp:113:9: note: because ‘pwiz::util::BinaryData::iterator’ has user-provided ‘pwiz::util::BinaryData::iterator::iterator(const pwiz::util::BinaryData::iterator&) [with T = long int]’ 113 | iterator(const iterator& rhs) : current_(rhs.current_) {} | ^~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.cpp:286:14: warning: implicitly-declared ‘constexpr pwiz::util::BinaryData::iterator& pwiz::util::BinaryData::iterator::operator=(const pwiz::util::BinaryData::iterator&)’ is deprecated [-Wdeprecated-copy] 286 | end_ = iterator(binaryData, false); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.hpp:113:9: note: because ‘pwiz::util::BinaryData::iterator’ has user-provided ‘pwiz::util::BinaryData::iterator::iterator(const pwiz::util::BinaryData::iterator&) [with T = long int]’ 113 | iterator(const iterator& rhs) : current_(rhs.current_) {} | ^~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.cpp:287:17: warning: implicitly-declared ‘constexpr pwiz::util::BinaryData::const_iterator& pwiz::util::BinaryData::const_iterator::operator=(const pwiz::util::BinaryData::const_iterator&)’ is deprecated [-Wdeprecated-copy] 287 | cbegin_ = const_iterator(binaryData, true); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.hpp:79:9: note: because ‘pwiz::util::BinaryData::const_iterator’ has user-provided ‘pwiz::util::BinaryData::const_iterator::const_iterator(const pwiz::util::BinaryData::const_iterator&) [with T = long int]’ 79 | const_iterator(const const_iterator& rhs) : current_(rhs.current_) {} | ^~~~~~~~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.cpp:288:15: warning: implicitly-declared ‘constexpr pwiz::util::BinaryData::const_iterator& pwiz::util::BinaryData::const_iterator::operator=(const pwiz::util::BinaryData::const_iterator&)’ is deprecated [-Wdeprecated-copy] 288 | cend_ = const_iterator(binaryData, false); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.hpp:79:9: note: because ‘pwiz::util::BinaryData::const_iterator’ has user-provided ‘pwiz::util::BinaryData::const_iterator::const_iterator(const pwiz::util::BinaryData::const_iterator&) [with T = long int]’ 79 | const_iterator(const const_iterator& rhs) : current_(rhs.current_) {} | ^~~~~~~~~~~~~~ [ 56%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/Base64.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/<>/obj-x86_64-linux-gnu/src -I/<>/src -I/<>/src/boost -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/Base64.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/Base64.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/Base64.cpp.o -c /<>/src/pwiz/utility/misc/Base64.cpp [ 57%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/random_access_compressed_ifstream.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/<>/obj-x86_64-linux-gnu/src -I/<>/src -I/<>/src/boost -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/random_access_compressed_ifstream.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/random_access_compressed_ifstream.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/random_access_compressed_ifstream.cpp.o -c /<>/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp /<>/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp: In member function ‘std::streampos pwiz::util::random_access_compressed_streambuf::my_seekg(std::streampos, std::ios_base::seekdir, std::ios_base::openmode)’: /<>/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp:824:138: warning: unused parameter ‘Mode’ [-Wunused-parameter] 824 | std::streampos random_access_compressed_streambuf::my_seekg(std::streampos offset, std::ios_base::seekdir whence,std::ios_base::openmode Mode) { | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp: In member function ‘std::streampos pwiz::util::chunky_streambuf::my_seekg(boost::iostreams::stream_offset, std::ios_base::seekdir, std::ios_base::openmode)’: /<>/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp:1199:137: warning: unused parameter ‘Mode’ [-Wunused-parameter] 1199 | std::streampos chunky_streambuf::my_seekg(boost::iostreams::stream_offset offset, std::ios_base::seekdir whence,std::ios_base::openmode Mode) { | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~ [ 58%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/Filesystem.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/<>/obj-x86_64-linux-gnu/src -I/<>/src -I/<>/src/boost -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/Filesystem.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/Filesystem.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/Filesystem.cpp.o -c /<>/src/pwiz/utility/misc/Filesystem.cpp /<>/src/pwiz/utility/misc/Filesystem.cpp: In function ‘void pwiz::util::force_close_handles_to_filepath(const std::string&, bool)’: /<>/src/pwiz/utility/misc/Filesystem.cpp:256:71: warning: unused parameter ‘filepath’ [-Wunused-parameter] 256 | PWIZ_API_DECL void force_close_handles_to_filepath(const std::string& filepath, bool closeMemoryMappedSections) noexcept(true) | ~~~~~~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/utility/misc/Filesystem.cpp:256:86: warning: unused parameter ‘closeMemoryMappedSections’ [-Wunused-parameter] 256 | PWIZ_API_DECL void force_close_handles_to_filepath(const std::string& filepath, bool closeMemoryMappedSections) noexcept(true) | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/pwiz/utility/misc/Filesystem.cpp: In function ‘void pwiz::util::check_path_length(const std::string&)’: /<>/src/pwiz/utility/misc/Filesystem.cpp:719:52: warning: unused parameter ‘path’ [-Wunused-parameter] 719 | PWIZ_API_DECL void check_path_length(const string& path) | ~~~~~~~~~~~~~~^~~~ [ 60%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/IntegerSet.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/<>/obj-x86_64-linux-gnu/src -I/<>/src -I/<>/src/boost -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/IntegerSet.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/IntegerSet.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/IntegerSet.cpp.o -c /<>/src/pwiz/utility/misc/IntegerSet.cpp /<>/src/pwiz/utility/misc/IntegerSet.cpp: In member function ‘bool pwiz::util::IntegerSet::Iterator::operator==(const pwiz::util::IntegerSet::Iterator&) const’: /<>/src/pwiz/utility/misc/IntegerSet.cpp:307:63: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] 307 | return (it_!=end_ && that.it_!=that.end_ && it_==that.it_ && value_==that.value_ || | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ [ 61%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/SHA1.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/<>/obj-x86_64-linux-gnu/src -I/<>/src -I/<>/src/boost -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/SHA1.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/SHA1.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/SHA1.cpp.o -c /<>/src/pwiz/utility/misc/SHA1.cpp [ 62%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/SHA1Calculator.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/<>/obj-x86_64-linux-gnu/src -I/<>/src -I/<>/src/boost -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/SHA1Calculator.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/SHA1Calculator.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/SHA1Calculator.cpp.o -c /<>/src/pwiz/utility/misc/SHA1Calculator.cpp [ 63%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/String.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/<>/obj-x86_64-linux-gnu/src -I/<>/src -I/<>/src/boost -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/String.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/String.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/String.cpp.o -c /<>/src/pwiz/utility/misc/String.cpp [ 65%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_MGF.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/<>/obj-x86_64-linux-gnu/src -I/<>/src -I/<>/src/boost -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_MGF.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_MGF.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_MGF.cpp.o -c /<>/src/pwiz/data/msdata/Serializer_MGF.cpp In file included from /<>/src/pwiz/data/msdata/MSData.hpp:29, from /<>/src/pwiz/data/msdata/Serializer_MGF.hpp:27, from /<>/src/pwiz/data/msdata/Serializer_MGF.cpp:25: /<>/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/x86_64-linux-gnu/include/c++/12/bits/stl_algobase.h:65, from /usr/x86_64-linux-gnu/include/c++/12/algorithm:60, from /<>/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/x86_64-linux-gnu/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/x86_64-linux-gnu/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /<>/src/pwiz/data/msdata/Serializer_MGF.hpp:29: /<>/src/pwiz/utility/misc/IterationListener.hpp: In member function ‘virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)’: /<>/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter ‘updateMessage’ [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ [ 66%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSNumpress.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/<>/obj-x86_64-linux-gnu/src -I/<>/src -I/<>/src/boost -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSNumpress.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSNumpress.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSNumpress.cpp.o -c /<>/src/pwiz/data/msdata/MSNumpress.cpp /<>/src/pwiz/data/msdata/MSNumpress.cpp: In function ‘void pwiz::msdata::MSNumpress::encodeInt(int, unsigned char*, size_t*)’: /<>/src/pwiz/data/msdata/MSNumpress.cpp:114:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 114 | } else if (init == mask) { | ~~~~~^~~~~~~ In file included from /usr/x86_64-linux-gnu/include/c++/12/iostream:39, from /<>/src/pwiz/data/msdata/MSNumpress.cpp:27: In member function ‘std::basic_ostream<_CharT, _Traits>::__ostream_type& std::basic_ostream<_CharT, _Traits>::operator<<(long long int) [with _CharT = char; _Traits = std::char_traits]’, inlined from ‘size_t pwiz::msdata::MSNumpress::decodeLinear(const unsigned char*, size_t, double*)’ at /<>/src/pwiz/data/msdata/MSNumpress.cpp:404:26: /usr/x86_64-linux-gnu/include/c++/12/ostream:202:25: warning: ‘y’ may be used uninitialized [-Wmaybe-uninitialized] 202 | { return _M_insert(__n); } | ~~~~~~~~~^~~~~ /<>/src/pwiz/data/msdata/MSNumpress.cpp: In function ‘size_t pwiz::msdata::MSNumpress::decodeLinear(const unsigned char*, size_t, double*)’: /<>/src/pwiz/data/msdata/MSNumpress.cpp:347:15: note: ‘y’ was declared here 347 | long long y; | ^ In member function ‘std::basic_ostream<_CharT, _Traits>::__ostream_type& std::basic_ostream<_CharT, _Traits>::operator<<(long long int) [with _CharT = char; _Traits = std::char_traits]’, inlined from ‘size_t pwiz::msdata::MSNumpress::decodeLinear(const unsigned char*, size_t, double*)’ at /<>/src/pwiz/data/msdata/MSNumpress.cpp:403:33: /usr/x86_64-linux-gnu/include/c++/12/ostream:202:25: warning: ‘extrapol’ may be used uninitialized [-Wmaybe-uninitialized] 202 | { return _M_insert(__n); } | ~~~~~~~~~^~~~~ /<>/src/pwiz/data/msdata/MSNumpress.cpp: In function ‘size_t pwiz::msdata::MSNumpress::decodeLinear(const unsigned char*, size_t, double*)’: /<>/src/pwiz/data/msdata/MSNumpress.cpp:346:15: note: ‘extrapol’ was declared here 346 | long long extrapol; | ^~~~~~~~ [ 67%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_MSn.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/<>/obj-x86_64-linux-gnu/src -I/<>/src -I/<>/src/boost -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_MSn.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_MSn.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_MSn.cpp.o -c /<>/src/pwiz/data/msdata/Serializer_MSn.cpp In file included from /<>/src/pwiz/data/msdata/MSData.hpp:29, from /<>/src/pwiz/data/msdata/Serializer_MSn.hpp:26, from /<>/src/pwiz/data/msdata/Serializer_MSn.cpp:25: /<>/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/x86_64-linux-gnu/include/c++/12/bits/stl_algobase.h:65, from /usr/x86_64-linux-gnu/include/c++/12/algorithm:60, from /<>/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/x86_64-linux-gnu/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/x86_64-linux-gnu/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /<>/src/pwiz/data/msdata/Serializer_MSn.hpp:28: /<>/src/pwiz/utility/misc/IterationListener.hpp: In member function ‘virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)’: /<>/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter ‘updateMessage’ [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /<>/src/pwiz/data/msdata/Serializer_MSn.cpp: In member function ‘void pwiz::msdata::Serializer_MSn::write(std::ostream&, const pwiz::msdata::MSData&, const pwiz::util::IterationListenerRegistry*, bool) const’: /<>/src/pwiz/data/msdata/Serializer_MSn.cpp:524:10: warning: unused parameter ‘useWorkerThreads’ [-Wunused-parameter] 524 | bool useWorkerThreads) const | ~~~~~^~~~~~~~~~~~~~~~ [ 68%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumInfo.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/<>/obj-x86_64-linux-gnu/src -I/<>/src -I/<>/src/boost -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumInfo.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumInfo.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumInfo.cpp.o -c /<>/src/pwiz/data/msdata/SpectrumInfo.cpp In file included from /<>/src/pwiz/data/msdata/MSData.hpp:29, from /<>/src/pwiz/data/msdata/SpectrumInfo.hpp:29, from /<>/src/pwiz/data/msdata/SpectrumInfo.cpp:27: /<>/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/x86_64-linux-gnu/include/c++/12/bits/stl_algobase.h:65, from /usr/x86_64-linux-gnu/include/c++/12/algorithm:60, from /<>/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/x86_64-linux-gnu/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/x86_64-linux-gnu/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ [ 70%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/IO.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/<>/obj-x86_64-linux-gnu/src -I/<>/src -I/<>/src/boost -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/IO.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/IO.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/IO.cpp.o -c /<>/src/pwiz/data/msdata/IO.cpp In file included from /<>/src/pwiz/data/msdata/MSData.hpp:29, from /<>/src/pwiz/data/msdata/IO.hpp:29, from /<>/src/pwiz/data/msdata/IO.cpp:26: /<>/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/x86_64-linux-gnu/include/c++/12/bits/stl_algobase.h:65, from /usr/x86_64-linux-gnu/include/c++/12/algorithm:60, from /<>/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/x86_64-linux-gnu/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/x86_64-linux-gnu/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /<>/src/pwiz/data/msdata/IO.hpp:32: /<>/src/pwiz/utility/misc/IterationListener.hpp: In member function ‘virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)’: /<>/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter ‘updateMessage’ [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ In file included from /<>/src/pwiz/data/msdata/IO.cpp:28: /<>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)’: /<>/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter ‘name’ [-Wunused-parameter] 585 | virtual Status processingInstruction(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter ‘data’ [-Wunused-parameter] 586 | const std::string& data, | ~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter ‘position’ [-Wunused-parameter] 587 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)’: /<>/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter ‘name’ [-Wunused-parameter] 589 | virtual Status startElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter ‘attributes’ [-Wunused-parameter] 590 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter ‘position’ [-Wunused-parameter] 591 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)’: /<>/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter ‘name’ [-Wunused-parameter] 593 | virtual Status endElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter ‘position’ [-Wunused-parameter] 594 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)’: /<>/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter ‘text’ [-Wunused-parameter] 596 | virtual Status characters(const SAXParser::saxstring& text, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter ‘position’ [-Wunused-parameter] 597 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/data/msdata/IO.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerCV::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)’: /<>/src/pwiz/data/msdata/IO.cpp:81:47: warning: unused parameter ‘position’ [-Wunused-parameter] 81 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/data/msdata/IO.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerUserParam::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)’: /<>/src/pwiz/data/msdata/IO.cpp:132:47: warning: unused parameter ‘position’ [-Wunused-parameter] 132 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/data/msdata/IO.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerCVParam::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)’: /<>/src/pwiz/data/msdata/IO.cpp:191:47: warning: unused parameter ‘position’ [-Wunused-parameter] 191 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/data/msdata/IO.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerParamContainer::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)’: /<>/src/pwiz/data/msdata/IO.cpp:263:47: warning: unused parameter ‘position’ [-Wunused-parameter] 263 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/data/msdata/IO.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerFileDescription::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)’: /<>/src/pwiz/data/msdata/IO.cpp:500:51: warning: unused parameter ‘attributes’ [-Wunused-parameter] 500 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /<>/src/pwiz/data/msdata/IO.cpp:501:47: warning: unused parameter ‘position’ [-Wunused-parameter] 501 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/data/msdata/IO.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerComponentList::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)’: /<>/src/pwiz/data/msdata/IO.cpp:693:51: warning: unused parameter ‘attributes’ [-Wunused-parameter] 693 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /<>/src/pwiz/data/msdata/IO.cpp:694:47: warning: unused parameter ‘position’ [-Wunused-parameter] 694 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/data/msdata/IO.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerDataProcessing::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)’: /<>/src/pwiz/data/msdata/IO.cpp:966:47: warning: unused parameter ‘position’ [-Wunused-parameter] 966 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/data/msdata/IO.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerScanSettings::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)’: /<>/src/pwiz/data/msdata/IO.cpp:1079:47: warning: unused parameter ‘position’ [-Wunused-parameter] 1079 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/data/msdata/IO.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerProduct::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)’: /<>/src/pwiz/data/msdata/IO.cpp:1355:51: warning: unused parameter ‘attributes’ [-Wunused-parameter] 1355 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /<>/src/pwiz/data/msdata/IO.cpp:1356:47: warning: unused parameter ‘position’ [-Wunused-parameter] 1356 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/data/msdata/IO.cpp: In function ‘void pwiz::msdata::IO::writeBinaryDataArray(pwiz::minimxml::XMLWriter&, const BinaryDataArrayType&, const pwiz::msdata::BinaryDataEncoder::Config&)’: /<>/src/pwiz/data/msdata/IO.cpp:1657:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1657 | if (usedConfig.byteOrder == BinaryDataEncoder::ByteOrder_BigEndian) | ^~ /<>/src/pwiz/data/msdata/IO.cpp:1660:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1660 | bool zlib = false; // Handle numpress+zlib | ^~~~ /<>/src/pwiz/data/msdata/IO.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerSpectrum::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)’: /<>/src/pwiz/data/msdata/IO.cpp:2169:35: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] 2169 | else if (version == 1 && name == "acquisitionList" /* mzML 1.0 */ || name == "scanList") | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/pwiz/data/msdata/IO.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerSpectrumListSimple::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)’: /<>/src/pwiz/data/msdata/IO.cpp:2438:47: warning: unused parameter ‘position’ [-Wunused-parameter] 2438 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/data/msdata/IO.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerChromatogramListSimple::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)’: /<>/src/pwiz/data/msdata/IO.cpp:2539:47: warning: unused parameter ‘position’ [-Wunused-parameter] 2539 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/data/msdata/IO.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerMSData::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)’: /<>/src/pwiz/data/msdata/IO.cpp:2869:31: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] 2869 | else if (version == 1 && name == "acquisitionSettings" /* mzML 1.0 */ || | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/pwiz/data/msdata/IO.cpp:2787:47: warning: unused parameter ‘position’ [-Wunused-parameter] 2787 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ [ 71%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_BTDX.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/<>/obj-x86_64-linux-gnu/src -I/<>/src -I/<>/src/boost -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_BTDX.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_BTDX.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_BTDX.cpp.o -c /<>/src/pwiz/data/msdata/SpectrumList_BTDX.cpp In file included from /<>/src/pwiz/data/msdata/MSData.hpp:29, from /<>/src/pwiz/data/msdata/SpectrumListBase.hpp:28, from /<>/src/pwiz/data/msdata/SpectrumList_BTDX.hpp:30, from /<>/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:26: /<>/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/x86_64-linux-gnu/include/c++/12/bits/stl_algobase.h:65, from /usr/x86_64-linux-gnu/include/c++/12/algorithm:60, from /<>/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/x86_64-linux-gnu/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/x86_64-linux-gnu/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /<>/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:28: /<>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)’: /<>/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter ‘name’ [-Wunused-parameter] 585 | virtual Status processingInstruction(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter ‘data’ [-Wunused-parameter] 586 | const std::string& data, | ~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter ‘position’ [-Wunused-parameter] 587 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)’: /<>/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter ‘name’ [-Wunused-parameter] 589 | virtual Status startElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter ‘attributes’ [-Wunused-parameter] 590 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter ‘position’ [-Wunused-parameter] 591 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)’: /<>/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter ‘name’ [-Wunused-parameter] 593 | virtual Status endElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter ‘position’ [-Wunused-parameter] 594 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)’: /<>/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter ‘text’ [-Wunused-parameter] 596 | virtual Status characters(const SAXParser::saxstring& text, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter ‘position’ [-Wunused-parameter] 597 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/data/msdata/SpectrumList_BTDX.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerPeaks::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)’: /<>/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:121:47: warning: unused parameter ‘position’ [-Wunused-parameter] 121 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/data/msdata/SpectrumList_BTDX.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerPeaks::endElement(const std::string&, pwiz::minimxml::SAXParser::Handler::stream_offset)’: /<>/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:162:45: warning: unused parameter ‘position’ [-Wunused-parameter] 162 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/data/msdata/SpectrumList_BTDX.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexCreator::endElement(const std::string&, pwiz::minimxml::SAXParser::Handler::stream_offset)’: /<>/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:356:45: warning: unused parameter ‘position’ [-Wunused-parameter] 356 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ [ 72%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/ChromatogramList_mzML.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/<>/obj-x86_64-linux-gnu/src -I/<>/src -I/<>/src/boost -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/ChromatogramList_mzML.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/ChromatogramList_mzML.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/ChromatogramList_mzML.cpp.o -c /<>/src/pwiz/data/msdata/ChromatogramList_mzML.cpp In file included from /<>/src/pwiz/data/msdata/MSData.hpp:29, from /<>/src/pwiz/data/msdata/ChromatogramListBase.hpp:28, from /<>/src/pwiz/data/msdata/ChromatogramList_mzML.hpp:29, from /<>/src/pwiz/data/msdata/ChromatogramList_mzML.cpp:26: /<>/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/x86_64-linux-gnu/include/c++/12/bits/stl_algobase.h:65, from /usr/x86_64-linux-gnu/include/c++/12/algorithm:60, from /<>/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/x86_64-linux-gnu/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/x86_64-linux-gnu/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /<>/src/pwiz/data/msdata/IO.hpp:32, from /<>/src/pwiz/data/msdata/ChromatogramList_mzML.cpp:27: /<>/src/pwiz/utility/misc/IterationListener.hpp: In member function ‘virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)’: /<>/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter ‘updateMessage’ [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ In file included from /<>/src/pwiz/data/msdata/ChromatogramList_mzML.cpp:29: /<>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)’: /<>/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter ‘name’ [-Wunused-parameter] 585 | virtual Status processingInstruction(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter ‘data’ [-Wunused-parameter] 586 | const std::string& data, | ~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter ‘position’ [-Wunused-parameter] 587 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)’: /<>/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter ‘name’ [-Wunused-parameter] 589 | virtual Status startElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter ‘attributes’ [-Wunused-parameter] 590 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter ‘position’ [-Wunused-parameter] 591 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)’: /<>/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter ‘name’ [-Wunused-parameter] 593 | virtual Status endElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter ‘position’ [-Wunused-parameter] 594 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)’: /<>/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter ‘text’ [-Wunused-parameter] 596 | virtual Status characters(const SAXParser::saxstring& text, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter ‘position’ [-Wunused-parameter] 597 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ [ 73%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_mzML.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/<>/obj-x86_64-linux-gnu/src -I/<>/src -I/<>/src/boost -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_mzML.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_mzML.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_mzML.cpp.o -c /<>/src/pwiz/data/msdata/SpectrumList_mzML.cpp In file included from /<>/src/pwiz/data/msdata/MSData.hpp:29, from /<>/src/pwiz/data/msdata/SpectrumListBase.hpp:28, from /<>/src/pwiz/data/msdata/SpectrumList_mzML.hpp:29, from /<>/src/pwiz/data/msdata/SpectrumList_mzML.cpp:26: /<>/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/x86_64-linux-gnu/include/c++/12/bits/stl_algobase.h:65, from /usr/x86_64-linux-gnu/include/c++/12/algorithm:60, from /<>/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/x86_64-linux-gnu/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/x86_64-linux-gnu/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /<>/src/pwiz/data/msdata/IO.hpp:32, from /<>/src/pwiz/data/msdata/SpectrumList_mzML.cpp:27: /<>/src/pwiz/utility/misc/IterationListener.hpp: In member function ‘virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)’: /<>/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter ‘updateMessage’ [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ In file included from /<>/src/pwiz/data/msdata/SpectrumList_mzML.cpp:29: /<>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)’: /<>/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter ‘name’ [-Wunused-parameter] 585 | virtual Status processingInstruction(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter ‘data’ [-Wunused-parameter] 586 | const std::string& data, | ~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter ‘position’ [-Wunused-parameter] 587 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)’: /<>/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter ‘name’ [-Wunused-parameter] 589 | virtual Status startElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter ‘attributes’ [-Wunused-parameter] 590 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter ‘position’ [-Wunused-parameter] 591 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)’: /<>/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter ‘name’ [-Wunused-parameter] 593 | virtual Status endElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter ‘position’ [-Wunused-parameter] 594 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)’: /<>/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter ‘text’ [-Wunused-parameter] 596 | virtual Status characters(const SAXParser::saxstring& text, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter ‘position’ [-Wunused-parameter] 597 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /<>/src/pwiz/data/common/ParamTypes.hpp:33, from /<>/src/pwiz/data/msdata/MSData.hpp:30: /usr/include/boost/bind.hpp: At global scope: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ [ 75%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Version.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/<>/obj-x86_64-linux-gnu/src -I/<>/src -I/<>/src/boost -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Version.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Version.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Version.cpp.o -c /<>/src/pwiz/data/msdata/Version.cpp [ 76%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSDataFile.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/<>/obj-x86_64-linux-gnu/src -I/<>/src -I/<>/src/boost -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSDataFile.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSDataFile.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSDataFile.cpp.o -c /<>/src/pwiz/data/msdata/MSDataFile.cpp In file included from /<>/src/pwiz/data/msdata/MSData.hpp:29, from /<>/src/pwiz/data/msdata/MSDataFile.hpp:29, from /<>/src/pwiz/data/msdata/MSDataFile.cpp:26: /<>/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/x86_64-linux-gnu/include/c++/12/bits/stl_algobase.h:65, from /usr/x86_64-linux-gnu/include/c++/12/algorithm:60, from /<>/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/x86_64-linux-gnu/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/x86_64-linux-gnu/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /<>/src/pwiz/data/msdata/Reader.hpp:28, from /<>/src/pwiz/data/msdata/MSDataFile.hpp:30: /<>/src/pwiz/utility/misc/IterationListener.hpp: In member function ‘virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)’: /<>/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter ‘updateMessage’ [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ In file included from /<>/src/pwiz/data/msdata/Reader.hpp:29: /<>/src/pwiz/utility/chemistry/MzMobilityWindow.hpp: In member function ‘bool pwiz::chemistry::MzMobilityWindow::mobilityValueInBounds(double) const’: /<>/src/pwiz/utility/chemistry/MzMobilityWindow.hpp:40:59: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] 40 | mobilityBounds.get().first < mobilityValue && mobilityValue < mobilityBounds.get().second; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/src/pwiz/data/msdata/MSDataFile.cpp:35: /<>/src/pwiz/data/msdata/DefaultReaderList.hpp: In member function ‘virtual std::string pwiz::msdata::Reader_MS2::identify(const std::string&, const std::string&) const’: /<>/src/pwiz/data/msdata/DefaultReaderList.hpp:98:53: warning: unused parameter ‘filename’ [-Wunused-parameter] 98 | virtual std::string identify(const std::string& filename, const std::string& head) const { return ""; } | ~~~~~~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/data/msdata/DefaultReaderList.hpp:98:82: warning: unused parameter ‘head’ [-Wunused-parameter] 98 | virtual std::string identify(const std::string& filename, const std::string& head) const { return ""; } | ~~~~~~~~~~~~~~~~~~~^~~~ [ 77%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumListBase.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/<>/obj-x86_64-linux-gnu/src -I/<>/src -I/<>/src/boost -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumListBase.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumListBase.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumListBase.cpp.o -c /<>/src/pwiz/data/msdata/SpectrumListBase.cpp In file included from /<>/src/pwiz/data/msdata/MSData.hpp:29, from /<>/src/pwiz/data/msdata/SpectrumListBase.hpp:28, from /<>/src/pwiz/data/msdata/SpectrumListBase.cpp:25: /<>/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/x86_64-linux-gnu/include/c++/12/bits/stl_algobase.h:65, from /usr/x86_64-linux-gnu/include/c++/12/algorithm:60, from /<>/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/x86_64-linux-gnu/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/x86_64-linux-gnu/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ [ 78%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/BinaryDataEncoder.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/<>/obj-x86_64-linux-gnu/src -I/<>/src -I/<>/src/boost -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/BinaryDataEncoder.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/BinaryDataEncoder.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/BinaryDataEncoder.cpp.o -c /<>/src/pwiz/data/msdata/BinaryDataEncoder.cpp In file included from /<>/src/pwiz/data/msdata/BinaryDataEncoder.hpp:29, from /<>/src/pwiz/data/msdata/BinaryDataEncoder.cpp:26: /<>/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/x86_64-linux-gnu/include/c++/12/bits/stl_algobase.h:65, from /usr/x86_64-linux-gnu/include/c++/12/algorithm:60, from /<>/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/x86_64-linux-gnu/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/x86_64-linux-gnu/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /<>/src/pwiz/data/msdata/BinaryDataEncoder.cpp: In member function ‘void pwiz::msdata::BinaryDataEncoder::Impl::encode(const double*, size_t, std::string&, size_t*)’: /<>/src/pwiz/data/msdata/BinaryDataEncoder.cpp:302:37: warning: ‘byteCount’ may be used uninitialized [-Wmaybe-uninitialized] 302 | filterArray(byteBuffer, byteCount,compressed); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/pwiz/data/msdata/BinaryDataEncoder.cpp:131:12: note: ‘byteCount’ was declared here 131 | size_t byteCount; | ^~~~~~~~~ /<>/src/pwiz/data/msdata/BinaryDataEncoder.cpp:302:37: warning: ‘byteBuffer’ may be used uninitialized [-Wmaybe-uninitialized] 302 | filterArray(byteBuffer, byteCount,compressed); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/pwiz/data/msdata/BinaryDataEncoder.cpp:132:17: note: ‘byteBuffer’ was declared here 132 | const void* byteBuffer; | ^~~~~~~~~~ [ 80%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_mzXML.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/<>/obj-x86_64-linux-gnu/src -I/<>/src -I/<>/src/boost -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_mzXML.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_mzXML.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_mzXML.cpp.o -c /<>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp In file included from /<>/src/pwiz/data/msdata/MSData.hpp:29, from /<>/src/pwiz/data/msdata/SpectrumListBase.hpp:28, from /<>/src/pwiz/data/msdata/SpectrumList_mzXML.hpp:29, from /<>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:25: /<>/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/x86_64-linux-gnu/include/c++/12/bits/stl_algobase.h:65, from /usr/x86_64-linux-gnu/include/c++/12/algorithm:60, from /<>/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/x86_64-linux-gnu/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/x86_64-linux-gnu/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /<>/src/pwiz/data/msdata/IO.hpp:32, from /<>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:26: /<>/src/pwiz/utility/misc/IterationListener.hpp: In member function ‘virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)’: /<>/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter ‘updateMessage’ [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ In file included from /<>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:28: /<>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)’: /<>/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter ‘name’ [-Wunused-parameter] 585 | virtual Status processingInstruction(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter ‘data’ [-Wunused-parameter] 586 | const std::string& data, | ~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter ‘position’ [-Wunused-parameter] 587 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)’: /<>/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter ‘name’ [-Wunused-parameter] 589 | virtual Status startElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter ‘attributes’ [-Wunused-parameter] 590 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter ‘position’ [-Wunused-parameter] 591 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)’: /<>/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter ‘name’ [-Wunused-parameter] 593 | virtual Status endElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter ‘position’ [-Wunused-parameter] 594 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)’: /<>/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter ‘text’ [-Wunused-parameter] 596 | virtual Status characters(const SAXParser::saxstring& text, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter ‘position’ [-Wunused-parameter] 597 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In constructor ‘pwiz::msdata::{anonymous}::SpectrumList_mzXMLImpl::SpectrumList_mzXMLImpl(boost::shared_ptr >, const pwiz::msdata::MSData&, bool)’: /<>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:84:30: warning: catching polymorphic type ‘struct pwiz::msdata::SpectrumList_mzXML::index_not_found’ by value [-Wcatch-value=] 84 | } catch (index_not_found e){ | ^ /<>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerPrecursor::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)’: /<>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:128:47: warning: unused parameter ‘position’ [-Wunused-parameter] 128 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerPrecursor::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)’: /<>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:212:45: warning: unused parameter ‘position’ [-Wunused-parameter] 212 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerPeaks::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)’: /<>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:239:47: warning: unused parameter ‘position’ [-Wunused-parameter] 239 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerPeaks::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)’: /<>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:282:45: warning: unused parameter ‘position’ [-Wunused-parameter] 282 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerPeaks::endElement(const std::string&, pwiz::minimxml::SAXParser::Handler::stream_offset)’: /<>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:302:70: warning: unused parameter ‘position’ [-Wunused-parameter] 302 | virtual Status endElement(const std::string& name, stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexOffset::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)’: /<>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:701:51: warning: unused parameter ‘attributes’ [-Wunused-parameter] 701 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /<>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:702:47: warning: unused parameter ‘position’ [-Wunused-parameter] 702 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexOffset::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)’: /<>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:710:45: warning: unused parameter ‘position’ [-Wunused-parameter] 710 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerOffset::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)’: /<>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:736:47: warning: unused parameter ‘position’ [-Wunused-parameter] 736 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerOffset::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)’: /<>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:754:45: warning: unused parameter ‘position’ [-Wunused-parameter] 754 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndex::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)’: /<>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:778:51: warning: unused parameter ‘attributes’ [-Wunused-parameter] 778 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /<>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:779:47: warning: unused parameter ‘position’ [-Wunused-parameter] 779 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndex::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)’: /<>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:796:59: warning: unused parameter ‘text’ [-Wunused-parameter] 796 | virtual Status characters(const SAXParser::saxstring& text, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:797:45: warning: unused parameter ‘position’ [-Wunused-parameter] 797 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexCreator::endElement(const std::string&, pwiz::minimxml::SAXParser::Handler::stream_offset)’: /<>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:885:45: warning: unused parameter ‘position’ [-Wunused-parameter] 885 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ [ 81%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSData.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/<>/obj-x86_64-linux-gnu/src -I/<>/src -I/<>/src/boost -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSData.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSData.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSData.cpp.o -c /<>/src/pwiz/data/msdata/MSData.cpp In file included from /<>/src/pwiz/data/msdata/MSData.hpp:29, from /<>/src/pwiz/data/msdata/MSData.cpp:25: /<>/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/x86_64-linux-gnu/include/c++/12/bits/stl_algobase.h:65, from /usr/x86_64-linux-gnu/include/c++/12/algorithm:60, from /<>/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/x86_64-linux-gnu/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/x86_64-linux-gnu/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /<>/src/pwiz/data/msdata/MSData.cpp: In member function ‘virtual size_t pwiz::msdata::SpectrumList::findAbbreviated(const std::string&, char) const’: /<>/src/pwiz/data/msdata/MSData.cpp:1112:21: warning: comparison of unsigned expression in ‘>= 0’ is always true [-Wtype-limits] 1112 | if ((result >= 0 && result < size()) || s == 0) | ~~~~~~~^~~~ /<>/src/pwiz/data/msdata/MSData.cpp: In member function ‘virtual void pwiz::msdata::SpectrumList::warn_once(const char*) const’: /<>/src/pwiz/data/msdata/MSData.cpp:1160:56: warning: unused parameter ‘msg’ [-Wunused-parameter] 1160 | PWIZ_API_DECL void SpectrumList::warn_once(const char *msg) const | ~~~~~~~~~~~~^~~ /<>/src/pwiz/data/msdata/MSData.cpp: In member function ‘virtual pwiz::msdata::SpectrumPtr pwiz::msdata::SpectrumListSimple::spectrum(size_t, bool) const’: /<>/src/pwiz/data/msdata/MSData.cpp:1204:75: warning: unused parameter ‘getBinaryData’ [-Wunused-parameter] 1204 | PWIZ_API_DECL SpectrumPtr SpectrumListSimple::spectrum(size_t index, bool getBinaryData) const | ~~~~~^~~~~~~~~~~~~ /<>/src/pwiz/data/msdata/MSData.cpp: In member function ‘virtual pwiz::msdata::ChromatogramPtr pwiz::msdata::ChromatogramListSimple::chromatogram(size_t, bool) const’: /<>/src/pwiz/data/msdata/MSData.cpp:1271:87: warning: unused parameter ‘getBinaryData’ [-Wunused-parameter] 1271 | PWIZ_API_DECL ChromatogramPtr ChromatogramListSimple::chromatogram(size_t index, bool getBinaryData) const | ~~~~~^~~~~~~~~~~~~ /<>/src/pwiz/data/msdata/MSData.cpp: In function ‘std::string pwiz::msdata::id::translateNativeIDToScanNumber(pwiz::cv::CVID, const std::string&)’: /<>/src/pwiz/data/msdata/MSData.cpp:578:13: warning: this statement may fall through [-Wimplicit-fallthrough=] 578 | if (id.find("controllerType=0 controllerNumber=1") != 0) | ^~ /<>/src/pwiz/data/msdata/MSData.cpp:583:9: note: here 583 | case MS_Bruker_Agilent_YEP_nativeID_format: | ^~~~ /<>/src/pwiz/data/msdata/MSData.cpp: In member function ‘virtual size_t pwiz::msdata::SpectrumList::findAbbreviated(const std::string&, char) const’: /<>/src/pwiz/data/msdata/MSData.cpp:1115:1: warning: control reaches end of non-void function [-Wreturn-type] 1115 | } | ^ [ 82%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/LegacyAdapter.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/<>/obj-x86_64-linux-gnu/src -I/<>/src -I/<>/src/boost -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/LegacyAdapter.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/LegacyAdapter.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/LegacyAdapter.cpp.o -c /<>/src/pwiz/data/msdata/LegacyAdapter.cpp In file included from /<>/src/pwiz/data/msdata/MSData.hpp:29, from /<>/src/pwiz/data/msdata/LegacyAdapter.hpp:30, from /<>/src/pwiz/data/msdata/LegacyAdapter.cpp:27: /<>/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/x86_64-linux-gnu/include/c++/12/bits/stl_algobase.h:65, from /usr/x86_64-linux-gnu/include/c++/12/algorithm:60, from /<>/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/x86_64-linux-gnu/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/x86_64-linux-gnu/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ [ 83%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Reader.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/<>/obj-x86_64-linux-gnu/src -I/<>/src -I/<>/src/boost -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Reader.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Reader.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Reader.cpp.o -c /<>/src/pwiz/data/msdata/Reader.cpp In file included from /<>/src/pwiz/data/msdata/Reader.hpp:28, from /<>/src/pwiz/data/msdata/Reader.cpp:26: /<>/src/pwiz/utility/misc/IterationListener.hpp: In member function ‘virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)’: /<>/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter ‘updateMessage’ [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ In file included from /<>/src/pwiz/data/msdata/Reader.hpp:29: /<>/src/pwiz/utility/chemistry/MzMobilityWindow.hpp: In member function ‘bool pwiz::chemistry::MzMobilityWindow::mobilityValueInBounds(double) const’: /<>/src/pwiz/utility/chemistry/MzMobilityWindow.hpp:40:59: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] 40 | mobilityBounds.get().first < mobilityValue && mobilityValue < mobilityBounds.get().second; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/src/pwiz/data/msdata/MSData.hpp:29, from /<>/src/pwiz/data/msdata/Reader.hpp:30: /<>/src/pwiz/utility/misc/BinaryData.hpp: At global scope: /<>/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/x86_64-linux-gnu/include/c++/12/bits/stl_algobase.h:65, from /usr/x86_64-linux-gnu/include/c++/12/memory:63, from /usr/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35, from /usr/include/boost/smart_ptr/detail/shared_count.hpp:27, from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, from /usr/include/boost/shared_ptr.hpp:17, from /<>/src/pwiz/utility/misc/IterationListener.hpp:29: /usr/x86_64-linux-gnu/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/x86_64-linux-gnu/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /<>/src/pwiz/data/msdata/Reader.cpp: In member function ‘virtual void pwiz::msdata::Reader::readIds(const std::string&, const std::string&, std::vector >&, const Config&) const’: /<>/src/pwiz/data/msdata/Reader.cpp:76:119: warning: unused parameter ‘config’ [-Wunused-parameter] 76 | PWIZ_API_DECL void Reader::readIds(const string& filename, const string& head, vector& results, const Config& config) const | ~~~~~~~~~~~~~~^~~~~~ [ 85%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_MSn.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/<>/obj-x86_64-linux-gnu/src -I/<>/src -I/<>/src/boost -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_MSn.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_MSn.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_MSn.cpp.o -c /<>/src/pwiz/data/msdata/SpectrumList_MSn.cpp In file included from /<>/src/pwiz/data/msdata/MSData.hpp:29, from /<>/src/pwiz/data/msdata/SpectrumListBase.hpp:28, from /<>/src/pwiz/data/msdata/SpectrumList_MSn.hpp:29, from /<>/src/pwiz/data/msdata/SpectrumList_MSn.cpp:26: /<>/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/x86_64-linux-gnu/include/c++/12/bits/stl_algobase.h:65, from /usr/x86_64-linux-gnu/include/c++/12/algorithm:60, from /<>/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/x86_64-linux-gnu/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/x86_64-linux-gnu/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ [ 86%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_mzML.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/<>/obj-x86_64-linux-gnu/src -I/<>/src -I/<>/src/boost -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_mzML.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_mzML.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_mzML.cpp.o -c /<>/src/pwiz/data/msdata/Serializer_mzML.cpp In file included from /<>/src/pwiz/data/msdata/MSData.hpp:29, from /<>/src/pwiz/data/msdata/Serializer_mzML.hpp:29, from /<>/src/pwiz/data/msdata/Serializer_mzML.cpp:26: /<>/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/x86_64-linux-gnu/include/c++/12/bits/stl_algobase.h:65, from /usr/x86_64-linux-gnu/include/c++/12/algorithm:60, from /<>/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/x86_64-linux-gnu/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/x86_64-linux-gnu/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /<>/src/pwiz/data/msdata/Serializer_mzML.hpp:31: /<>/src/pwiz/utility/misc/IterationListener.hpp: In member function ‘virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)’: /<>/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter ‘updateMessage’ [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ In file included from /<>/src/pwiz/data/msdata/Serializer_mzML.cpp:32: /<>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)’: /<>/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter ‘name’ [-Wunused-parameter] 585 | virtual Status processingInstruction(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter ‘data’ [-Wunused-parameter] 586 | const std::string& data, | ~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter ‘position’ [-Wunused-parameter] 587 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)’: /<>/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter ‘name’ [-Wunused-parameter] 589 | virtual Status startElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter ‘attributes’ [-Wunused-parameter] 590 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter ‘position’ [-Wunused-parameter] 591 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)’: /<>/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter ‘name’ [-Wunused-parameter] 593 | virtual Status endElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter ‘position’ [-Wunused-parameter] 594 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)’: /<>/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter ‘text’ [-Wunused-parameter] 596 | virtual Status characters(const SAXParser::saxstring& text, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter ‘position’ [-Wunused-parameter] 597 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/data/msdata/Serializer_mzML.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::HandlerIndexedMZML::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)’: /<>/src/pwiz/data/msdata/Serializer_mzML.cpp:205:51: warning: unused parameter ‘attributes’ [-Wunused-parameter] 205 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /<>/src/pwiz/data/msdata/Serializer_mzML.cpp:206:47: warning: unused parameter ‘position’ [-Wunused-parameter] 206 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ [ 87%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Index_mzML.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/<>/obj-x86_64-linux-gnu/src -I/<>/src -I/<>/src/boost -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Index_mzML.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Index_mzML.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Index_mzML.cpp.o -c /<>/src/pwiz/data/msdata/Index_mzML.cpp In file included from /<>/src/pwiz/data/msdata/MSData.hpp:29, from /<>/src/pwiz/data/msdata/Index_mzML.hpp:28, from /<>/src/pwiz/data/msdata/Index_mzML.cpp:24: /<>/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/x86_64-linux-gnu/include/c++/12/bits/stl_algobase.h:65, from /usr/x86_64-linux-gnu/include/c++/12/algorithm:60, from /<>/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/x86_64-linux-gnu/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/x86_64-linux-gnu/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /<>/src/pwiz/data/msdata/Index_mzML.cpp:26: /<>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)’: /<>/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter ‘name’ [-Wunused-parameter] 585 | virtual Status processingInstruction(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter ‘data’ [-Wunused-parameter] 586 | const std::string& data, | ~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter ‘position’ [-Wunused-parameter] 587 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)’: /<>/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter ‘name’ [-Wunused-parameter] 589 | virtual Status startElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter ‘attributes’ [-Wunused-parameter] 590 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter ‘position’ [-Wunused-parameter] 591 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)’: /<>/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter ‘name’ [-Wunused-parameter] 593 | virtual Status endElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter ‘position’ [-Wunused-parameter] 594 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)’: /<>/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter ‘text’ [-Wunused-parameter] 596 | virtual Status characters(const SAXParser::saxstring& text, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter ‘position’ [-Wunused-parameter] 597 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ In file included from /<>/src/pwiz/data/msdata/IO.hpp:32, from /<>/src/pwiz/data/msdata/Index_mzML.cpp:28: /<>/src/pwiz/utility/misc/IterationListener.hpp: In member function ‘virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)’: /<>/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter ‘updateMessage’ [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /<>/src/pwiz/data/msdata/Index_mzML.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexListOffset::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)’: /<>/src/pwiz/data/msdata/Index_mzML.cpp:82:51: warning: unused parameter ‘attributes’ [-Wunused-parameter] 82 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /<>/src/pwiz/data/msdata/Index_mzML.cpp:83:47: warning: unused parameter ‘position’ [-Wunused-parameter] 83 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/data/msdata/Index_mzML.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexListOffset::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)’: /<>/src/pwiz/data/msdata/Index_mzML.cpp:91:45: warning: unused parameter ‘position’ [-Wunused-parameter] 91 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/data/msdata/Index_mzML.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerOffset::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)’: /<>/src/pwiz/data/msdata/Index_mzML.cpp:116:47: warning: unused parameter ‘position’ [-Wunused-parameter] 116 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/data/msdata/Index_mzML.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerOffset::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)’: /<>/src/pwiz/data/msdata/Index_mzML.cpp:161:45: warning: unused parameter ‘position’ [-Wunused-parameter] 161 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/data/msdata/Index_mzML.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexList::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)’: /<>/src/pwiz/data/msdata/Index_mzML.cpp:197:47: warning: unused parameter ‘position’ [-Wunused-parameter] 197 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ [ 88%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumWorkerThreads.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/<>/obj-x86_64-linux-gnu/src -I/<>/src -I/<>/src/boost -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumWorkerThreads.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumWorkerThreads.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumWorkerThreads.cpp.o -c /<>/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp In file included from /<>/src/pwiz/data/msdata/MSData.hpp:29, from /<>/src/pwiz/data/msdata/SpectrumWorkerThreads.hpp:26, from /<>/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp:26: /<>/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/x86_64-linux-gnu/include/c++/12/string:45, from /usr/x86_64-linux-gnu/include/c++/12/stdexcept:39, from /<>/src/pwiz/utility/misc/Exception.hpp:28, from /<>/src/pwiz/utility/misc/Std.hpp:28, from /<>/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp:24: /usr/x86_64-linux-gnu/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/x86_64-linux-gnu/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /usr/x86_64-linux-gnu/include/c++/12/vector:64, from /usr/x86_64-linux-gnu/include/c++/12/functional:62, from /usr/include/boost/numeric/conversion/converter_policies.hpp:19, from /usr/include/boost/numeric/conversion/converter.hpp:14, from /usr/include/boost/numeric/conversion/cast.hpp:33, from /usr/include/boost/lexical_cast/detail/converter_numeric.hpp:36, from /usr/include/boost/lexical_cast/try_lexical_convert.hpp:43, from /usr/include/boost/lexical_cast.hpp:32, from /<>/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /<>/src/pwiz/utility/misc/Environment.hpp:24, from /<>/src/pwiz/utility/misc/Std.hpp:29: In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::operator[](size_type) [with _Tp = pwiz::msdata::SpectrumWorkerThreads::Impl::Task; _Alloc = std::allocator]’, inlined from ‘static void pwiz::msdata::SpectrumWorkerThreads::Impl::work(pwiz::msdata::SpectrumWorkerThreads::Impl*, TaskWorker*)’ at /<>/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp:251:43: /usr/x86_64-linux-gnu/include/c++/12/bits/stl_vector.h:1124:41: warning: ‘lruToReset.boost::optional::.boost::optional_detail::tc_optional_base::m_storage’ may be used uninitialized [-Wmaybe-uninitialized] 1124 | return *(this->_M_impl._M_start + __n); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /<>/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp: In static member function ‘static void pwiz::msdata::SpectrumWorkerThreads::Impl::work(pwiz::msdata::SpectrumWorkerThreads::Impl*, TaskWorker*)’: /<>/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp:240:41: note: ‘lruToReset.boost::optional::.boost::optional_detail::tc_optional_base::m_storage’ was declared here 240 | boost::optional lruToReset; | ^~~~~~~~~~ [ 90%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/References.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/<>/obj-x86_64-linux-gnu/src -I/<>/src -I/<>/src/boost -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/References.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/References.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/References.cpp.o -c /<>/src/pwiz/data/msdata/References.cpp In file included from /<>/src/pwiz/data/msdata/MSData.hpp:29, from /<>/src/pwiz/data/msdata/References.hpp:29, from /<>/src/pwiz/data/msdata/References.cpp:25: /<>/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/x86_64-linux-gnu/include/c++/12/bits/stl_algobase.h:65, from /usr/x86_64-linux-gnu/include/c++/12/algorithm:60, from /<>/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/x86_64-linux-gnu/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/x86_64-linux-gnu/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ [ 91%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_MGF.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/<>/obj-x86_64-linux-gnu/src -I/<>/src -I/<>/src/boost -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_MGF.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_MGF.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_MGF.cpp.o -c /<>/src/pwiz/data/msdata/SpectrumList_MGF.cpp In file included from /<>/src/pwiz/data/msdata/MSData.hpp:29, from /<>/src/pwiz/data/msdata/SpectrumListBase.hpp:28, from /<>/src/pwiz/data/msdata/SpectrumList_MGF.hpp:30, from /<>/src/pwiz/data/msdata/SpectrumList_MGF.cpp:26: /<>/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/x86_64-linux-gnu/include/c++/12/bits/stl_algobase.h:65, from /usr/x86_64-linux-gnu/include/c++/12/algorithm:60, from /<>/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/x86_64-linux-gnu/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/x86_64-linux-gnu/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ [ 92%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/DefaultReaderList.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/<>/obj-x86_64-linux-gnu/src -I/<>/src -I/<>/src/boost -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/DefaultReaderList.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/DefaultReaderList.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/DefaultReaderList.cpp.o -c /<>/src/pwiz/data/msdata/DefaultReaderList.cpp In file included from /<>/src/pwiz/data/msdata/DefaultReaderList.cpp:28: /<>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)’: /<>/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter ‘name’ [-Wunused-parameter] 585 | virtual Status processingInstruction(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter ‘data’ [-Wunused-parameter] 586 | const std::string& data, | ~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter ‘position’ [-Wunused-parameter] 587 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)’: /<>/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter ‘name’ [-Wunused-parameter] 589 | virtual Status startElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter ‘attributes’ [-Wunused-parameter] 590 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter ‘position’ [-Wunused-parameter] 591 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)’: /<>/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter ‘name’ [-Wunused-parameter] 593 | virtual Status endElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter ‘position’ [-Wunused-parameter] 594 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)’: /<>/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter ‘text’ [-Wunused-parameter] 596 | virtual Status characters(const SAXParser::saxstring& text, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter ‘position’ [-Wunused-parameter] 597 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ In file included from /<>/src/pwiz/data/msdata/Reader.hpp:28, from /<>/src/pwiz/data/msdata/DefaultReaderList.hpp:29, from /<>/src/pwiz/data/msdata/DefaultReaderList.cpp:29: /<>/src/pwiz/utility/misc/IterationListener.hpp: In member function ‘virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)’: /<>/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter ‘updateMessage’ [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ In file included from /<>/src/pwiz/data/msdata/Reader.hpp:29: /<>/src/pwiz/utility/chemistry/MzMobilityWindow.hpp: In member function ‘bool pwiz::chemistry::MzMobilityWindow::mobilityValueInBounds(double) const’: /<>/src/pwiz/utility/chemistry/MzMobilityWindow.hpp:40:59: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] 40 | mobilityBounds.get().first < mobilityValue && mobilityValue < mobilityBounds.get().second; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/src/pwiz/data/msdata/MSData.hpp:29, from /<>/src/pwiz/data/msdata/Reader.hpp:30: /<>/src/pwiz/utility/misc/BinaryData.hpp: At global scope: /<>/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/x86_64-linux-gnu/include/c++/12/string:45, from /usr/x86_64-linux-gnu/include/c++/12/stdexcept:39, from /<>/src/pwiz/utility/misc/Exception.hpp:28, from /<>/src/pwiz/utility/misc/Std.hpp:28, from /<>/src/pwiz/data/msdata/DefaultReaderList.cpp:26: /usr/x86_64-linux-gnu/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/x86_64-linux-gnu/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /<>/src/pwiz/data/msdata/DefaultReaderList.hpp: In member function ‘virtual std::string pwiz::msdata::Reader_MS2::identify(const std::string&, const std::string&) const’: /<>/src/pwiz/data/msdata/DefaultReaderList.hpp:98:53: warning: unused parameter ‘filename’ [-Wunused-parameter] 98 | virtual std::string identify(const std::string& filename, const std::string& head) const { return ""; } | ~~~~~~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/data/msdata/DefaultReaderList.hpp:98:82: warning: unused parameter ‘head’ [-Wunused-parameter] 98 | virtual std::string identify(const std::string& filename, const std::string& head) const { return ""; } | ~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function ‘virtual std::string pwiz::msdata::Reader_mzML::identify(const std::string&, const std::string&) const’: /<>/src/pwiz/data/msdata/DefaultReaderList.cpp:122:68: warning: unused parameter ‘filename’ [-Wunused-parameter] 122 | PWIZ_API_DECL std::string Reader_mzML::identify(const std::string& filename, const std::string& head) const | ~~~~~~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function ‘virtual void pwiz::msdata::Reader_mzML::read(const std::string&, const std::string&, pwiz::msdata::MSData&, int, const pwiz::msdata::Reader::Config&) const’: /<>/src/pwiz/data/msdata/DefaultReaderList.cpp:129:57: warning: unused parameter ‘head’ [-Wunused-parameter] 129 | const std::string& head, | ~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/data/msdata/DefaultReaderList.cpp:132:52: warning: unused parameter ‘config’ [-Wunused-parameter] 132 | const Config& config) const | ~~~~~~~~~~~~~~^~~~~~ /<>/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function ‘virtual std::string pwiz::msdata::Reader_mzXML::identify(const std::string&, const std::string&) const’: /<>/src/pwiz/data/msdata/DefaultReaderList.cpp:197:69: warning: unused parameter ‘filename’ [-Wunused-parameter] 197 | PWIZ_API_DECL std::string Reader_mzXML::identify(const std::string& filename, const std::string& head) const | ~~~~~~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function ‘virtual void pwiz::msdata::Reader_mzXML::read(const std::string&, const std::string&, pwiz::msdata::MSData&, int, const pwiz::msdata::Reader::Config&) const’: /<>/src/pwiz/data/msdata/DefaultReaderList.cpp:212:58: warning: unused parameter ‘head’ [-Wunused-parameter] 212 | const std::string& head, | ~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/data/msdata/DefaultReaderList.cpp:215:53: warning: unused parameter ‘config’ [-Wunused-parameter] 215 | const Config& config) const | ~~~~~~~~~~~~~~^~~~~~ /<>/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function ‘virtual std::string pwiz::msdata::Reader_MGF::identify(const std::string&, const std::string&) const’: /<>/src/pwiz/data/msdata/DefaultReaderList.cpp:263:86: warning: unused parameter ‘head’ [-Wunused-parameter] 263 | PWIZ_API_DECL std::string Reader_MGF::identify(const string& filename, const string& head) const | ~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function ‘virtual void pwiz::msdata::Reader_MGF::read(const std::string&, const std::string&, pwiz::msdata::MSData&, int, const pwiz::msdata::Reader::Config&) const’: /<>/src/pwiz/data/msdata/DefaultReaderList.cpp:269:51: warning: unused parameter ‘head’ [-Wunused-parameter] 269 | const string& head, | ~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/data/msdata/DefaultReaderList.cpp:272:51: warning: unused parameter ‘config’ [-Wunused-parameter] 272 | const Config& config) const | ~~~~~~~~~~~~~~^~~~~~ /<>/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function ‘virtual void pwiz::msdata::Reader_MGF::read(const std::string&, const std::string&, std::vector >&, const pwiz::msdata::Reader::Config&) const’: /<>/src/pwiz/data/msdata/DefaultReaderList.cpp:292:51: warning: unused parameter ‘config’ [-Wunused-parameter] 292 | const Config& config) const | ~~~~~~~~~~~~~~^~~~~~ /<>/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function ‘virtual std::string pwiz::msdata::Reader_MSn::identify(const std::string&, const std::string&) const’: /<>/src/pwiz/data/msdata/DefaultReaderList.cpp:303:86: warning: unused parameter ‘head’ [-Wunused-parameter] 303 | PWIZ_API_DECL std::string Reader_MSn::identify(const string& filename, const string& head) const | ~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function ‘virtual void pwiz::msdata::Reader_MSn::read(const std::string&, const std::string&, pwiz::msdata::MSData&, int, const pwiz::msdata::Reader::Config&) const’: /<>/src/pwiz/data/msdata/DefaultReaderList.cpp:313:51: warning: unused parameter ‘head’ [-Wunused-parameter] 313 | const string& head, | ~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/data/msdata/DefaultReaderList.cpp:316:51: warning: unused parameter ‘config’ [-Wunused-parameter] 316 | const Config& config) const | ~~~~~~~~~~~~~~^~~~~~ /<>/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function ‘virtual void pwiz::msdata::Reader_MSn::read(const std::string&, const std::string&, std::vector >&, const pwiz::msdata::Reader::Config&) const’: /<>/src/pwiz/data/msdata/DefaultReaderList.cpp:349:51: warning: unused parameter ‘config’ [-Wunused-parameter] 349 | const Config& config) const | ~~~~~~~~~~~~~~^~~~~~ /<>/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function ‘virtual std::string pwiz::msdata::Reader_BTDX::identify(const std::string&, const std::string&) const’: /<>/src/pwiz/data/msdata/DefaultReaderList.cpp:360:63: warning: unused parameter ‘filename’ [-Wunused-parameter] 360 | PWIZ_API_DECL std::string Reader_BTDX::identify(const string& filename, const string& head) const | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function ‘virtual void pwiz::msdata::Reader_BTDX::read(const std::string&, const std::string&, pwiz::msdata::MSData&, int, const pwiz::msdata::Reader::Config&) const’: /<>/src/pwiz/data/msdata/DefaultReaderList.cpp:376:52: warning: unused parameter ‘head’ [-Wunused-parameter] 376 | const string& head, | ~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/data/msdata/DefaultReaderList.cpp:379:52: warning: unused parameter ‘config’ [-Wunused-parameter] 379 | const Config& config) const | ~~~~~~~~~~~~~~^~~~~~ /<>/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function ‘virtual void pwiz::msdata::Reader_BTDX::read(const std::string&, const std::string&, std::vector >&, const pwiz::msdata::Reader::Config&) const’: /<>/src/pwiz/data/msdata/DefaultReaderList.cpp:406:52: warning: unused parameter ‘config’ [-Wunused-parameter] 406 | const Config& config) const | ~~~~~~~~~~~~~~^~~~~~ /<>/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function ‘virtual std::string pwiz::msdata::Reader_mz5::identify(const std::string&, const std::string&) const’: /<>/src/pwiz/data/msdata/DefaultReaderList.cpp:425:62: warning: unused parameter ‘filename’ [-Wunused-parameter] 425 | PWIZ_API_DECL std::string Reader_mz5::identify(const string& filename, const string& head) const | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function ‘virtual void pwiz::msdata::Reader_mz5::read(const std::string&, const std::string&, pwiz::msdata::MSData&, int, const pwiz::msdata::Reader::Config&) const’: /<>/src/pwiz/data/msdata/DefaultReaderList.cpp:458:51: warning: unused parameter ‘filename’ [-Wunused-parameter] 458 | PWIZ_API_DECL void Reader_mz5::read(const string& filename, | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/data/msdata/DefaultReaderList.cpp:459:51: warning: unused parameter ‘head’ [-Wunused-parameter] 459 | const string& head, | ~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/data/msdata/DefaultReaderList.cpp:460:45: warning: unused parameter ‘result’ [-Wunused-parameter] 460 | MSData& result, | ~~~~~~~~^~~~~~ /<>/src/pwiz/data/msdata/DefaultReaderList.cpp:461:41: warning: unused parameter ‘runIndex’ [-Wunused-parameter] 461 | int runIndex, | ~~~~^~~~~~~~ /<>/src/pwiz/data/msdata/DefaultReaderList.cpp:462:51: warning: unused parameter ‘config’ [-Wunused-parameter] 462 | const Config& config) const | ~~~~~~~~~~~~~~^~~~~~ /<>/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function ‘virtual void pwiz::msdata::Reader_mz5::read(const std::string&, const std::string&, std::vector >&, const pwiz::msdata::Reader::Config&) const’: /<>/src/pwiz/data/msdata/DefaultReaderList.cpp:484:51: warning: unused parameter ‘config’ [-Wunused-parameter] 484 | const Config& config) const | ~~~~~~~~~~~~~~^~~~~~ [ 93%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_mzXML.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/<>/obj-x86_64-linux-gnu/src -I/<>/src -I/<>/src/boost -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_mzXML.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_mzXML.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_mzXML.cpp.o -c /<>/src/pwiz/data/msdata/Serializer_mzXML.cpp In file included from /<>/src/pwiz/data/msdata/MSData.hpp:29, from /<>/src/pwiz/data/msdata/Serializer_mzXML.hpp:29, from /<>/src/pwiz/data/msdata/Serializer_mzXML.cpp:25: /<>/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/x86_64-linux-gnu/include/c++/12/bits/stl_algobase.h:65, from /usr/x86_64-linux-gnu/include/c++/12/algorithm:60, from /<>/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/x86_64-linux-gnu/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/x86_64-linux-gnu/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /<>/src/pwiz/data/msdata/Serializer_mzXML.hpp:31: /<>/src/pwiz/utility/misc/IterationListener.hpp: In member function ‘virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)’: /<>/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter ‘updateMessage’ [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ In file included from /<>/src/pwiz/data/msdata/Serializer_mzXML.cpp:32: /<>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)’: /<>/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter ‘name’ [-Wunused-parameter] 585 | virtual Status processingInstruction(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter ‘data’ [-Wunused-parameter] 586 | const std::string& data, | ~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter ‘position’ [-Wunused-parameter] 587 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)’: /<>/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter ‘name’ [-Wunused-parameter] 589 | virtual Status startElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter ‘attributes’ [-Wunused-parameter] 590 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter ‘position’ [-Wunused-parameter] 591 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)’: /<>/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter ‘name’ [-Wunused-parameter] 593 | virtual Status endElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter ‘position’ [-Wunused-parameter] 594 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)’: /<>/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter ‘text’ [-Wunused-parameter] 596 | virtual Status characters(const SAXParser::saxstring& text, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter ‘position’ [-Wunused-parameter] 597 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/data/msdata/Serializer_mzXML.cpp: In function ‘std::vector pwiz::msdata::{anonymous}::getPrecursorInfo(const pwiz::msdata::Spectrum&, pwiz::msdata::SpectrumListPtr, pwiz::cv::CVID)’: /<>/src/pwiz/data/msdata/Serializer_mzXML.cpp:421:62: warning: unused parameter ‘spectrumListPtr’ [-Wunused-parameter] 421 | const SpectrumListPtr spectrumListPtr, | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/src/pwiz/data/msdata/Serializer_mzXML.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerScanFileContent::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)’: /<>/src/pwiz/data/msdata/Serializer_mzXML.cpp:976:47: warning: unused parameter ‘position’ [-Wunused-parameter] 976 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/data/msdata/Serializer_mzXML.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::Handler_msInstrument::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)’: /<>/src/pwiz/data/msdata/Serializer_mzXML.cpp:1105:47: warning: unused parameter ‘position’ [-Wunused-parameter] 1105 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/data/msdata/Serializer_mzXML.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::Handler_msInstrument::endElement(const std::string&, pwiz::minimxml::SAXParser::Handler::stream_offset)’: /<>/src/pwiz/data/msdata/Serializer_mzXML.cpp:1186:45: warning: unused parameter ‘position’ [-Wunused-parameter] 1186 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/data/msdata/Serializer_mzXML.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::Handler_dataProcessing::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)’: /<>/src/pwiz/data/msdata/Serializer_mzXML.cpp:1234:47: warning: unused parameter ‘position’ [-Wunused-parameter] 1234 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/data/msdata/Serializer_mzXML.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::Handler_mzXML::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)’: /<>/src/pwiz/data/msdata/Serializer_mzXML.cpp:1302:47: warning: unused parameter ‘position’ [-Wunused-parameter] 1302 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ [ 95%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/common/ParamTypes.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/<>/obj-x86_64-linux-gnu/src -I/<>/src -I/<>/src/boost -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/common/ParamTypes.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/common/ParamTypes.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/common/ParamTypes.cpp.o -c /<>/src/pwiz/data/common/ParamTypes.cpp [ 96%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/common/cv.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/<>/obj-x86_64-linux-gnu/src -I/<>/src -I/<>/src/boost -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/common/cv.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/common/cv.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/common/cv.cpp.o -c /<>/src/pwiz/data/common/cv.cpp In file included from /<>/src/pwiz/data/common/cv.cpp:25067: /<>/src/pwiz/data/common/cv.inl: In function ‘const pwiz::cv::CVTermInfo& pwiz::cv::cvTermInfo(const char*)’: /<>/src/pwiz/data/common/cv.inl:102:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const size_t’ {aka ‘const long unsigned int’} [-Wsign-compare] 102 | for (int o=0;o>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/<>/obj-x86_64-linux-gnu/src -I/<>/src -I/<>/src/boost -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/common/CVTranslator.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/common/CVTranslator.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/common/CVTranslator.cpp.o -c /<>/src/pwiz/data/common/CVTranslator.cpp /<>/src/pwiz/data/common/CVTranslator.cpp: In function ‘bool pwiz::data::shouldIgnore(const std::string&, pwiz::cv::CVID, pwiz::cv::CVID)’: /<>/src/pwiz/data/common/CVTranslator.cpp:145:53: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] 145 | return (key=="unit_" && value==MS_unit_OBSOLETE && cvid==UO_unit || | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /<>/src/pwiz/data/common/CVTranslator.cpp:147:40: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] 147 | key=="pi_" && value==MS_PI && cvid==MS_pI || // MS_pI==isoelectric point | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /<>/src/pwiz/data/common/CVTranslator.cpp:148:40: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] 148 | key=="de_" && value==MS_DE && cvid==1001274 || // conflict between 1000246 and 1001274 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /<>/src/pwiz/data/common/CVTranslator.cpp: In function ‘bool pwiz::data::shouldReplace(const std::string&, pwiz::cv::CVID, pwiz::cv::CVID)’: /<>/src/pwiz/data/common/CVTranslator.cpp:153:34: warning: unused parameter ‘key’ [-Wunused-parameter] 153 | bool shouldReplace(const string& key, CVID value, CVID cvid) | ~~~~~~~~~~~~~~^~~ /<>/src/pwiz/data/common/CVTranslator.cpp:153:44: warning: unused parameter ‘value’ [-Wunused-parameter] 153 | bool shouldReplace(const string& key, CVID value, CVID cvid) | ~~~~~^~~~~ /<>/src/pwiz/data/common/CVTranslator.cpp:153:56: warning: unused parameter ‘cvid’ [-Wunused-parameter] 153 | bool shouldReplace(const string& key, CVID value, CVID cvid) | ~~~~~^~~~ [ 98%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/common/diff_std.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/<>/obj-x86_64-linux-gnu/src -I/<>/src -I/<>/src/boost -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/common/diff_std.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/common/diff_std.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/common/diff_std.cpp.o -c /<>/src/pwiz/data/common/diff_std.cpp /<>/src/pwiz/data/common/diff_std.cpp: In function ‘void pwiz::data::diff_impl::diff(const std::string&, const std::string&, std::string&, std::string&, const pwiz::data::BaseDiffConfig&)’: /<>/src/pwiz/data/common/diff_std.cpp:40:33: warning: unused parameter ‘config’ [-Wunused-parameter] 40 | const BaseDiffConfig& config) | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /<>/src/pwiz/data/common/diff_std.cpp: In function ‘void pwiz::data::diff_impl::diff(const boost::logic::tribool&, const boost::logic::tribool&, boost::logic::tribool&, boost::logic::tribool&, const pwiz::data::BaseDiffConfig&)’: /<>/src/pwiz/data/common/diff_std.cpp:88:33: warning: unused parameter ‘config’ [-Wunused-parameter] 88 | const BaseDiffConfig& config) | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /<>/src/pwiz/data/common/diff_std.cpp: In function ‘void pwiz::data::diff_impl::diff(pwiz::cv::CVID, pwiz::cv::CVID, pwiz::cv::CVID&, pwiz::cv::CVID&, const pwiz::data::BaseDiffConfig&)’: /<>/src/pwiz/data/common/diff_std.cpp:124:33: warning: unused parameter ‘config’ [-Wunused-parameter] 124 | const BaseDiffConfig& config) | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~ [100%] Linking CXX shared library libpwizlite.so cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/pwizlite-shared.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -fPIC -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libpwizlite.so.3 -o libpwizlite.so.3.0.4 "CMakeFiles/pwizlite-shared.dir/pwiz/utility/minimxml/XMLWriter.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/utility/minimxml/SAXParser.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/IterationListener.cpp.o" 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"CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/ChromatogramList_mzML.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_mzML.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Version.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSDataFile.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumListBase.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/BinaryDataEncoder.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_mzXML.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSData.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/LegacyAdapter.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Reader.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_MSn.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_mzML.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Index_mzML.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumWorkerThreads.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/References.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_MGF.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/DefaultReaderList.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_mzXML.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/common/ParamTypes.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/common/cv.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/common/CVTranslator.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/common/diff_std.cpp.o" /usr/lib/x86_64-linux-gnu/libboost_iostreams.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_thread.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_chrono.so.1.74.0 /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libboost_atomic.so.1.74.0 -lpthread cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/cmake -E cmake_symlink_library libpwizlite.so.3.0.4 libpwizlite.so.3 libpwizlite.so make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [100%] Built target pwizlite-shared make[2]: Leaving directory '/<>/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /<>/obj-x86_64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/<>/obj-x86_64-linux-gnu' dh: command-omitted: The call to "dh_auto_test -a -O--build-system=cmake" was omitted due to "DEB_BUILD_OPTIONS=nocheck" create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh binary-arch --build-system=cmake dh_testroot -a -O--build-system=cmake dh_prep -a -O--build-system=cmake dh_auto_install -a -O--build-system=cmake cd obj-x86_64-linux-gnu && make -j1 install DESTDIR=/<>/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/<>/obj-x86_64-linux-gnu' /usr/bin/cmake -S/<> -B/<>/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/<>/obj-x86_64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/<>/obj-x86_64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "release" -- Installing: /<>/debian/tmp/usr/lib/x86_64-linux-gnu/cmake/pwizlite/FindPwizLite.cmake -- Installing: /<>/debian/tmp/usr/lib/x86_64-linux-gnu/cmake/pwizlite/PwizLiteConfig.cmake -- Installing: /<>/debian/tmp/usr/lib/x86_64-linux-gnu/pkgconfig/libpwizlite.pc -- Installing: /<>/debian/tmp/usr/lib/x86_64-linux-gnu/libpwizlite.so.3.0.4 -- Installing: /<>/debian/tmp/usr/lib/x86_64-linux-gnu/libpwizlite.so.3 -- Installing: /<>/debian/tmp/usr/lib/x86_64-linux-gnu/libpwizlite.a make[1]: Leaving directory '/<>/obj-x86_64-linux-gnu' dh_install -a -O--build-system=cmake dh_installdocs -a -O--build-system=cmake dh_installchangelogs -a -O--build-system=cmake dh_installman -a -O--build-system=cmake dh_installsystemduser -a -O--build-system=cmake dh_perl -a -O--build-system=cmake dh_link -a -O--build-system=cmake dh_strip_nondeterminism -a -O--build-system=cmake dh_compress -a -O--build-system=cmake dh_fixperms -a -O--build-system=cmake dh_missing -a -O--build-system=cmake dh_dwz -a -O--build-system=cmake dh_strip -a -O--build-system=cmake dh_makeshlibs -a -O--build-system=cmake dh_shlibdeps -a -O--build-system=cmake dh_installdeb -a -O--build-system=cmake dh_gencontrol -a -O--build-system=cmake dh_md5sums -a -O--build-system=cmake dh_builddeb -a -O--build-system=cmake dpkg-deb: building package 'libpwizlite-dev' in '../libpwizlite-dev_3.0.4-1_amd64.deb'. dpkg-deb: building package 'libpwizlite3' in '../libpwizlite3_3.0.4-1_amd64.deb'. dpkg-deb: building package 'libpwizlite3-dbgsym' in '../libpwizlite3-dbgsym_3.0.4-1_amd64.deb'. dpkg-genbuildinfo --build=any -O../libpwizlite_3.0.4-1_amd64.buildinfo dpkg-genchanges --build=any -O../libpwizlite_3.0.4-1_amd64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2022-07-29T05:23:14Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ libpwizlite_3.0.4-1_amd64.changes: ---------------------------------- Format: 1.8 Date: Wed, 09 Feb 2022 11:59:15 +0100 Source: libpwizlite Binary: libpwizlite-dev libpwizlite3 libpwizlite3-dbgsym Built-For-Profiles: cross nocheck Architecture: amd64 Version: 3.0.4-1 Distribution: unstable Urgency: low Maintainer: The Debichem Group Changed-By: Filippo Rusconi Description: libpwizlite-dev - Library to load mzML/mzXML files (dev files) libpwizlite3 - Library to load mzML/mzXML files (runtime files) Changes: libpwizlite (3.0.4-1) unstable; urgency=low . * New upstream release (downloaded 20220208), filename pwiz-src-without-v-3_0_22039_5908c98.tar.bz2. . * Add debian/not-installed to document uninstalled files. . * Standards-Version: 4.6.0 (no changes required). . * Build-Depends: debhelper-compat (= 13). 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e0ec2ec7702f126fa74cac8d977e7b6a831d8f05f3199a662e8cd38fe82c6be7 1243548 libpwizlite-dev_3.0.4-1_amd64.deb c9d290c013f8777ef589c644f1c761fba7dee9939c7c7cd3ebdbc35fca8cfaf1 13292220 libpwizlite3-dbgsym_3.0.4-1_amd64.deb 3b7c12bab2e6373e7adf79300f5da09dad12da9d0d7bc5af8b0b1327cdc7cae6 822496 libpwizlite3_3.0.4-1_amd64.deb Build-Origin: Debian Build-Architecture: arm64 Build-Date: Fri, 29 Jul 2022 05:23:13 +0000 Build-Path: /<> Installed-Build-Depends: autoconf (= 2.71-2), automake (= 1:1.16.5-1.3), autopoint (= 0.21-6), autotools-dev (= 20220109.1), base-files (= 12.2), base-passwd (= 3.5.52), bash (= 5.1-6.1), binutils (= 2.38.90.20220713-2), binutils-aarch64-linux-gnu (= 2.38.90.20220713-2), binutils-common (= 2.38.90.20220713-2), bsdextrautils (= 2.38-6), bsdutils (= 1:2.38-6), build-essential (= 12.9), bzip2 (= 1.0.8-5), cmake (= 3.23.2-1), cmake-data (= 3.23.2-1), coreutils (= 8.32-4.1), cpp (= 4:12.1.0-3), cpp-12 (= 12.1.0-7), dash (= 0.5.11+git20210903+057cd650a4ed-8), debconf (= 1.5.79), debhelper (= 13.8), debianutils (= 5.7-0.2), dh-autoreconf (= 20), dh-elpa-helper (= 2.0.10), dh-exec (= 0.26), dh-strip-nondeterminism (= 1.13.0-1), diffutils (= 1:3.7-5), docutils-common (= 0.17.1+dfsg-2), dpkg (= 1.21.9), dpkg-dev (= 1.21.9), dwz (= 0.14-1), emacsen-common (= 3.0.4), file (= 1:5.41-4), findutils (= 4.9.0-3), g++ (= 4:12.1.0-3), g++-12 (= 12.1.0-7), gcc (= 4:12.1.0-3), gcc-11-base (= 11.3.0-5), gcc-12 (= 12.1.0-7), gcc-12-base (= 12.1.0-7), gettext (= 0.21-6), gettext-base (= 0.21-6), grep (= 3.7-1), groff-base (= 1.22.4-8), gzip (= 1.12-1), hostname (= 3.23), icu-devtools (= 71.1-3), init-system-helpers (= 1.64), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.3.1-1), libarchive-zip-perl (= 1.68-1), libarchive13 (= 3.6.0-1), libasan6 (= 11.3.0-5), libasan8 (= 12.1.0-7), libatomic1 (= 12.1.0-7), libattr1 (= 1:2.5.1-1), libaudit-common (= 1:3.0.7-1), libaudit1 (= 1:3.0.7-1+b1), libbinutils (= 2.38.90.20220713-2), libblkid1 (= 2.38-6), libboost-atomic1.74-dev (= 1.74.0-16.1+b1), libboost-atomic1.74.0 (= 1.74.0-16.1+b1), libboost-chrono-dev (= 1.74.0.3), libboost-chrono1.74-dev (= 1.74.0-16.1+b1), libboost-chrono1.74.0 (= 1.74.0-16.1+b1), libboost-date-time1.74-dev (= 1.74.0-16.1+b1), libboost-date-time1.74.0 (= 1.74.0-16.1+b1), libboost-dev (= 1.74.0.3), libboost-filesystem-dev (= 1.74.0.3), libboost-filesystem1.74-dev (= 1.74.0-16.1+b1), libboost-filesystem1.74.0 (= 1.74.0-16.1+b1), libboost-iostreams-dev (= 1.74.0.3), libboost-iostreams1.74-dev (= 1.74.0-16.1+b1), libboost-iostreams1.74.0 (= 1.74.0-16.1+b1), libboost-regex1.74-dev (= 1.74.0-16.1+b1), libboost-regex1.74.0 (= 1.74.0-16.1+b1), libboost-serialization1.74-dev (= 1.74.0-16.1+b1), libboost-serialization1.74.0 (= 1.74.0-16.1+b1), libboost-system1.74-dev (= 1.74.0-16.1+b1), libboost-system1.74.0 (= 1.74.0-16.1+b1), libboost-thread-dev (= 1.74.0.3), libboost-thread1.74-dev (= 1.74.0-16.1+b1), libboost-thread1.74.0 (= 1.74.0-16.1+b1), libboost1.74-dev (= 1.74.0-16.1+b1), libbrotli1 (= 1.0.9-2+b4), libbz2-1.0 (= 1.0.8-5), libc-bin (= 2.33-8), libc-dev-bin (= 2.33-8), libc6 (= 2.33-8), libc6-dev (= 2.33-8), libcap-ng0 (= 0.8.3-1+b1), libcap2 (= 1:2.44-1), libcc1-0 (= 12.1.0-7), libcom-err2 (= 1.46.5-2), libcrypt-dev (= 1:4.4.28-2), libcrypt1 (= 1:4.4.28-2), libctf-nobfd0 (= 2.38.90.20220713-2), libctf0 (= 2.38.90.20220713-2), libcurl4 (= 7.84.0-2), libdb5.3 (= 5.3.28+dfsg1-0.10), libdebconfclient0 (= 0.263), libdebhelper-perl (= 13.8), libdpkg-perl (= 1.21.9), libelf1 (= 0.187-1), libexpat1 (= 2.4.8-1), libffi8 (= 3.4.2-4), libfile-stripnondeterminism-perl (= 1.13.0-1), libgcc-11-dev (= 11.3.0-5), libgcc-12-dev (= 12.1.0-7), libgcc-s1 (= 12.1.0-7), libgcrypt20 (= 1.10.1-2), libgdbm-compat4 (= 1.23-1), libgdbm6 (= 1.23-1), libgmp10 (= 2:6.2.1+dfsg1-1), libgnutls30 (= 3.7.6-2), libgomp1 (= 12.1.0-7), libgpg-error0 (= 1.45-2), libgprofng0 (= 2.38.90.20220713-2), libgssapi-krb5-2 (= 1.20-1), libhogweed6 (= 3.7.3-1), libhwasan0 (= 12.1.0-7), libicu-dev (= 71.1-3), libicu71 (= 71.1-3), libidn2-0 (= 2.3.3-1), libisl23 (= 0.25-1), libitm1 (= 12.1.0-7), libjsoncpp25 (= 1.9.5-4), libk5crypto3 (= 1.20-1), libkeyutils1 (= 1.6.3-1), libkrb5-3 (= 1.20-1), libkrb5support0 (= 1.20-1), libldap-2.5-0 (= 2.5.12+dfsg-2), liblsan0 (= 12.1.0-7), liblz4-1 (= 1.9.3-2), liblzma5 (= 5.2.5-2.1), libmagic-mgc (= 1:5.41-4), libmagic1 (= 1:5.41-4), libmount1 (= 2.38-6), libmpc3 (= 1.2.1-2), libmpdec3 (= 2.5.1-2), libmpfr6 (= 4.1.0-3), libncurses6 (= 6.3+20220423-2), libncursesw6 (= 6.3+20220423-2), libnettle8 (= 3.7.3-1), libnghttp2-14 (= 1.48.0-1), libnsl-dev (= 1.3.0-2), libnsl2 (= 1.3.0-2), libp11-kit0 (= 0.24.1-1), libpam-modules (= 1.4.0-13), libpam-modules-bin (= 1.4.0-13), libpam-runtime (= 1.4.0-13), libpam0g (= 1.4.0-13), libpcre2-8-0 (= 10.40-1), libpcre3 (= 2:8.39-14), libperl5.34 (= 5.34.0-5), libpipeline1 (= 1.5.6-1), libprocps8 (= 2:3.3.17-7+b1), libpsl5 (= 0.21.0-1.2), libpython3-stdlib (= 3.10.5-3), libpython3.10-minimal (= 3.10.5-1), libpython3.10-stdlib (= 3.10.5-1), libquadmath0 (= 12.1.0-7), libreadline8 (= 8.1.2-1.2), librhash0 (= 1.4.3-3), librtmp1 (= 2.4+20151223.gitfa8646d.1-2+b2), libsasl2-2 (= 2.1.28+dfsg-6), libsasl2-modules-db (= 2.1.28+dfsg-6), libseccomp2 (= 2.5.4-1+b1), libselinux1 (= 3.4-1+b1), libsigsegv2 (= 2.14-1), libsmartcols1 (= 2.38-6), libsqlite3-0 (= 3.39.2-1), libssh2-1 (= 1.10.0-3+b1), libssl3 (= 3.0.5-1), libstdc++-11-dev (= 11.3.0-5), libstdc++-12-dev (= 12.1.0-7), libstdc++6 (= 12.1.0-7), libsub-override-perl (= 0.09-3), libsystemd0 (= 251.3-1), libtasn1-6 (= 4.18.0-4), libtinfo6 (= 6.3+20220423-2), libtirpc-common (= 1.3.2-2), libtirpc-dev (= 1.3.2-2), libtirpc3 (= 1.3.2-2), libtool (= 2.4.7-4), libtsan0 (= 11.3.0-5), libtsan2 (= 12.1.0-7), libubsan1 (= 12.1.0-7), libuchardet0 (= 0.0.7-1), libudev1 (= 251.3-1), libunistring2 (= 1.0-1), libuuid1 (= 2.38-6), libuv1 (= 1.44.2-1), libxml2 (= 2.9.14+dfsg-1+b1), libzstd1 (= 1.5.2+dfsg-1), linux-libc-dev (= 5.18.14-1), login (= 1:4.11.1+dfsg1-2), lsb-base (= 11.2), m4 (= 1.4.18-5), make (= 4.3-4.1), man-db (= 2.10.2-1), mawk (= 1.3.4.20200120-3.1), media-types (= 8.0.0), ncurses-base (= 6.3+20220423-2), ncurses-bin (= 6.3+20220423-2), patch (= 2.7.6-7), perl (= 5.34.0-5), perl-base (= 5.34.0-5), perl-modules-5.34 (= 5.34.0-5), po-debconf (= 1.0.21+nmu1), procps (= 2:3.3.17-7+b1), python3 (= 3.10.5-3), python3-docutils (= 0.17.1+dfsg-2), python3-minimal (= 3.10.5-3), python3-roman (= 3.3-1), python3.10 (= 3.10.5-1), python3.10-minimal (= 3.10.5-1), readline-common (= 8.1.2-1.2), rpcsvc-proto (= 1.4.2-4), sed (= 4.8-1), sensible-utils (= 0.0.17), sgml-base (= 1.30), sysvinit-utils (= 3.03-1), tar (= 1.34+dfsg-1), util-linux (= 2.38-6), util-linux-extra (= 2.38-6), xml-core (= 0.18+nmu1), xz-utils (= 5.2.5-2.1), zlib1g (= 1:1.2.11.dfsg-4), zlib1g-dev (= 1:1.2.11.dfsg-4) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="en_GB.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1644404355" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ libpwizlite-dev_3.0.4-1_amd64.deb --------------------------------- new Debian package, version 2.0. size 1243548 bytes: control archive=5308 bytes. 716 bytes, 20 lines control 14747 bytes, 164 lines md5sums Package: libpwizlite-dev Source: libpwizlite Version: 3.0.4-1 Architecture: amd64 Maintainer: The Debichem Group Installed-Size: 11302 Depends: libpwizlite3 (= 3.0.4-1) Replaces: libpwizlite-dev (<< 3.0.4-1) Section: libdevel Priority: optional Multi-Arch: same Homepage: https://salsa.debian.org/debichem-team/libpwizlite Description: Library to load mzML/mzXML files (dev files) This library is a dumbed-down version of the Proteowizard library. This library only contains the required features to load standard mzML/mzXML mass spectrometry data files. . See http://proteowizard.sourceforge.net/ for the original project. . This package ships the development files. drwxr-xr-x root/root 0 2022-02-09 10:59 ./ drwxr-xr-x root/root 0 2022-02-09 10:59 ./usr/ drwxr-xr-x root/root 0 2022-02-09 10:59 ./usr/include/ drwxr-xr-x root/root 0 2022-02-09 10:59 ./usr/include/pwizlite/ drwxr-xr-x root/root 0 2022-02-09 10:59 ./usr/include/pwizlite/boost/ -rw-r--r-- root/root 643 2022-02-09 10:59 ./usr/include/pwizlite/boost/enum.hpp drwxr-xr-x root/root 0 2022-02-09 10:59 ./usr/include/pwizlite/boost/enum/ -rw-r--r-- root/root 3056 2022-02-09 10:59 ./usr/include/pwizlite/boost/enum/base.hpp -rw-r--r-- root/root 7534 2022-02-09 10:59 ./usr/include/pwizlite/boost/enum/bitfield.hpp -rw-r--r-- root/root 1987 2022-02-09 10:59 ./usr/include/pwizlite/boost/enum/iterator.hpp -rw-r--r-- root/root 7533 2022-02-09 10:59 ./usr/include/pwizlite/boost/enum/macros.hpp -rw-r--r-- root/root 1923 2022-02-09 10:59 ./usr/include/pwizlite/boost/foreach_field.hpp drwxr-xr-x root/root 0 2022-02-09 10:59 ./usr/include/pwizlite/boost/iostreams/ -rw-r--r-- root/root 11196 2022-02-09 10:59 ./usr/include/pwizlite/boost/iostreams/arbitrary_positional_facade.hpp drwxr-xr-x root/root 0 2022-02-09 10:59 ./usr/include/pwizlite/boost/iostreams/filter/ -rw-r--r-- root/root 8739 2022-02-09 10:59 ./usr/include/pwizlite/boost/iostreams/filter/base64.hpp drwxr-xr-x root/root 0 2022-02-09 10:59 ./usr/include/pwizlite/boost/nowide/ -rw-r--r-- root/root 4719 2022-02-09 10:59 ./usr/include/pwizlite/boost/nowide/args.hpp -rw-r--r-- root/root 3605 2022-02-09 10:59 ./usr/include/pwizlite/boost/nowide/cenv.hpp -rw-r--r-- root/root 1509 2022-02-09 10:59 ./usr/include/pwizlite/boost/nowide/config.hpp -rw-r--r-- root/root 5233 2022-02-09 10:59 ./usr/include/pwizlite/boost/nowide/convert.hpp -rw-r--r-- root/root 2482 2022-02-09 10:59 ./usr/include/pwizlite/boost/nowide/cstdio.hpp -rw-r--r-- root/root 435 2022-02-09 10:59 ./usr/include/pwizlite/boost/nowide/cstdlib.hpp -rw-r--r-- root/root 11864 2022-02-09 10:59 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./usr/include/pwizlite/pwiz/utility/misc/SHA1Calculator.hpp -rw-r--r-- root/root 2862 2022-02-09 10:59 ./usr/include/pwizlite/pwiz/utility/misc/SHA1_ostream.hpp -rw-r--r-- root/root 1014 2022-02-09 10:59 ./usr/include/pwizlite/pwiz/utility/misc/Singleton.hpp -rw-r--r-- root/root 1960 2022-02-09 10:59 ./usr/include/pwizlite/pwiz/utility/misc/Std.hpp -rw-r--r-- root/root 2361 2022-02-09 10:59 ./usr/include/pwizlite/pwiz/utility/misc/Stream.hpp -rw-r--r-- root/root 5786 2022-02-09 10:59 ./usr/include/pwizlite/pwiz/utility/misc/String.hpp -rw-r--r-- root/root 2973 2022-02-09 10:59 ./usr/include/pwizlite/pwiz/utility/misc/TabReader.hpp -rw-r--r-- root/root 1254 2022-02-09 10:59 ./usr/include/pwizlite/pwiz/utility/misc/Timer.hpp -rw-r--r-- root/root 3993 2022-02-09 10:59 ./usr/include/pwizlite/pwiz/utility/misc/VendorReaderTestHarness.hpp -rw-r--r-- root/root 1243 2022-02-09 10:59 ./usr/include/pwizlite/pwiz/utility/misc/almost_equal.hpp -rw-r--r-- root/root 27829 2022-02-09 10:59 ./usr/include/pwizlite/pwiz/utility/misc/automation_vector.h -rw-r--r-- root/root 9870 2022-02-09 10:59 ./usr/include/pwizlite/pwiz/utility/misc/cpp_cli_utilities.hpp -rw-r--r-- root/root 2599 2022-02-09 10:59 ./usr/include/pwizlite/pwiz/utility/misc/endian.hpp -rw-r--r-- root/root 3962 2022-02-09 10:59 ./usr/include/pwizlite/pwiz/utility/misc/mru_list.hpp -rw-r--r-- root/root 10955 2022-02-09 10:59 ./usr/include/pwizlite/pwiz/utility/misc/optimized_lexical_cast.hpp -rw-r--r-- root/root 4103 2022-02-09 10:59 ./usr/include/pwizlite/pwiz/utility/misc/random_access_compressed_ifstream.hpp -rw-r--r-- root/root 11162 2022-02-09 10:59 ./usr/include/pwizlite/pwiz/utility/misc/shared_map.hpp -rw-r--r-- root/root 9032 2022-02-09 10:59 ./usr/include/pwizlite/pwiz/utility/misc/unit.hpp -rw-r--r-- root/root 11627 2022-02-09 10:59 ./usr/include/pwizlite/pwiz/utility/misc/virtual_map.hpp drwxr-xr-x root/root 0 2022-02-09 10:59 ./usr/lib/ drwxr-xr-x root/root 0 2022-02-09 10:59 ./usr/lib/x86_64-linux-gnu/ drwxr-xr-x root/root 0 2022-02-09 10:59 ./usr/lib/x86_64-linux-gnu/cmake/ drwxr-xr-x root/root 0 2022-02-09 10:59 ./usr/lib/x86_64-linux-gnu/cmake/pwizlite/ -rw-r--r-- root/root 770 2022-02-09 10:59 ./usr/lib/x86_64-linux-gnu/cmake/pwizlite/FindPwizLite.cmake -rw-r--r-- root/root 499 2022-02-09 10:59 ./usr/lib/x86_64-linux-gnu/cmake/pwizlite/PwizLiteConfig.cmake -rw-r--r-- root/root 9946304 2022-02-09 10:59 ./usr/lib/x86_64-linux-gnu/libpwizlite.a lrwxrwxrwx root/root 0 2022-02-09 10:59 ./usr/lib/x86_64-linux-gnu/libpwizlite.so -> libpwizlite.so.3.0.4 drwxr-xr-x root/root 0 2022-02-09 10:59 ./usr/lib/x86_64-linux-gnu/pkgconfig/ -rw-r--r-- root/root 226 2022-02-09 10:59 ./usr/lib/x86_64-linux-gnu/pkgconfig/libpwizlite.pc drwxr-xr-x root/root 0 2022-02-09 10:59 ./usr/share/ drwxr-xr-x root/root 0 2022-02-09 10:59 ./usr/share/doc/ drwxr-xr-x root/root 0 2022-02-09 10:59 ./usr/share/doc/libpwizlite-dev/ -rw-r--r-- root/root 907 2022-02-09 10:59 ./usr/share/doc/libpwizlite-dev/changelog.Debian.gz -rw-r--r-- root/root 14833 2022-02-09 10:59 ./usr/share/doc/libpwizlite-dev/copyright libpwizlite3-dbgsym_3.0.4-1_amd64.deb ------------------------------------- new Debian package, version 2.0. size 13292220 bytes: control archive=552 bytes. 395 bytes, 13 lines control 106 bytes, 1 lines md5sums Package: libpwizlite3-dbgsym Source: libpwizlite Version: 3.0.4-1 Auto-Built-Package: debug-symbols Architecture: amd64 Maintainer: The Debichem Group Installed-Size: 13646 Depends: libpwizlite3 (= 3.0.4-1) Section: debug Priority: optional Multi-Arch: same Description: debug symbols for libpwizlite3 Build-Ids: aa3274d77f85509bcf20aa17a2ca8f2379d189e8 drwxr-xr-x root/root 0 2022-02-09 10:59 ./ drwxr-xr-x root/root 0 2022-02-09 10:59 ./usr/ drwxr-xr-x root/root 0 2022-02-09 10:59 ./usr/lib/ drwxr-xr-x root/root 0 2022-02-09 10:59 ./usr/lib/debug/ drwxr-xr-x root/root 0 2022-02-09 10:59 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2022-02-09 10:59 ./usr/lib/debug/.build-id/aa/ -rw-r--r-- root/root 13962424 2022-02-09 10:59 ./usr/lib/debug/.build-id/aa/3274d77f85509bcf20aa17a2ca8f2379d189e8.debug drwxr-xr-x root/root 0 2022-02-09 10:59 ./usr/share/ drwxr-xr-x root/root 0 2022-02-09 10:59 ./usr/share/doc/ lrwxrwxrwx root/root 0 2022-02-09 10:59 ./usr/share/doc/libpwizlite3-dbgsym -> libpwizlite3 libpwizlite3_3.0.4-1_amd64.deb ------------------------------ new Debian package, version 2.0. size 822496 bytes: control archive=1016 bytes. 912 bytes, 20 lines control 302 bytes, 4 lines md5sums 38 bytes, 1 lines shlibs 65 bytes, 2 lines triggers Package: libpwizlite3 Source: libpwizlite Version: 3.0.4-1 Architecture: amd64 Maintainer: The Debichem Group Installed-Size: 4523 Depends: libboost-chrono1.74.0 (>= 1.74.0), libboost-filesystem1.74.0 (>= 1.74.0), libboost-iostreams1.74.0 (>= 1.74.0), libboost-thread1.74.0 (>= 1.74.0), libc6 (>= 2.33), libgcc-s1 (>= 3.4), libstdc++6 (>= 11), zlib1g (>= 1:1.2.0) Replaces: libpwizlite3 (<< 3.0.4-1) Section: libs Priority: optional Multi-Arch: same Homepage: https://salsa.debian.org/debichem-team/libpwizlite Description: Library to load mzML/mzXML files (runtime files) This library is a dumbed-down version of the Proteowizard library. This library only contains the required features to load standard mzML/mzXML mass spectrometry data files. . See http://proteowizard.sourceforge.net/ for the original project. . This package ships the runtime library files. drwxr-xr-x root/root 0 2022-02-09 10:59 ./ drwxr-xr-x root/root 0 2022-02-09 10:59 ./usr/ drwxr-xr-x root/root 0 2022-02-09 10:59 ./usr/lib/ drwxr-xr-x root/root 0 2022-02-09 10:59 ./usr/lib/x86_64-linux-gnu/ lrwxrwxrwx root/root 0 2022-02-09 10:59 ./usr/lib/x86_64-linux-gnu/libpwizlite.so.3 -> libpwizlite.so.3.0.4 -rw-r--r-- root/root 4599384 2022-02-09 10:59 ./usr/lib/x86_64-linux-gnu/libpwizlite.so.3.0.4 drwxr-xr-x root/root 0 2022-02-09 10:59 ./usr/share/ drwxr-xr-x root/root 0 2022-02-09 10:59 ./usr/share/doc/ drwxr-xr-x root/root 0 2022-02-09 10:59 ./usr/share/doc/libpwizlite3/ -rw-r--r-- root/root 907 2022-02-09 10:59 ./usr/share/doc/libpwizlite3/changelog.Debian.gz -rw-r--r-- root/root 14833 2022-02-09 10:59 ./usr/share/doc/libpwizlite3/copyright drwxr-xr-x root/root 0 2022-02-09 10:59 ./usr/share/man/ drwxr-xr-x root/root 0 2022-02-09 10:59 ./usr/share/man/man3/ -rw-r--r-- root/root 1150 2022-02-09 10:59 ./usr/share/man/man3/libpwizlite.3.gz lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:arm64 Filtered Build-Depends: lintian:arm64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/apt_archive/sbuild-build-depends-lintian-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [963 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [623 B] Get:5 copy:/<>/apt_archive ./ Packages [711 B] Fetched 2297 B in 0s (54.4 kB/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: ca-certificates diffstat gpg gpgconf iso-codes libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libberkeleydb-perl libcapture-tiny-perl libcgi-pm-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdata-validate-ip-perl libdata-validate-uri-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libencode-locale-perl libexception-class-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfile-listing-perl libfont-ttf-perl libhtml-form-perl libhtml-html5-entities-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tokeparser-simple-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libhttp-server-simple-perl libimport-into-perl libio-html-perl libio-interactive-perl libio-socket-ssl-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-moreutils-perl liblist-moreutils-xs-perl liblist-someutils-perl liblist-utilsby-perl liblwp-mediatypes-perl liblwp-protocol-https-perl liblz1 liblzo2-2 libmarkdown2 libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnet-http-perl libnet-ipv6addr-perl libnet-netmask-perl libnet-ssleay-perl libnetaddr-ip-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl libregexp-ipv6-perl libregexp-wildcards-perl librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libsyntax-keyword-try-perl libterm-readkey-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libwww-mechanize-perl libwww-perl libwww-robotrules-perl libxs-parse-keyword-perl libyaml-0-2 libyaml-libyaml-perl lintian lzop netbase openssl patchutils perl-openssl-defaults plzip t1utils unzip Suggested packages: isoquery libxml-parser-perl libdata-dump-perl libcrypt-ssleay-perl libscalar-number-perl libbareword-filehandles-perl libindirect-perl libmultidimensional-perl libbusiness-isbn-perl libauthen-ntlm-perl binutils-multiarch libtext-template-perl zip Recommended packages: gnupg libcgi-fast-perl libhtml-format-perl liblist-someutils-xs-perl libfreezethaw-perl libmath-base85-perl libsocket6-perl libpackage-stash-xs-perl libdata-dump-perl libhttp-daemon-perl libmailtools-perl The following NEW packages will be installed: ca-certificates diffstat gpg gpgconf iso-codes libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libberkeleydb-perl libcapture-tiny-perl libcgi-pm-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdata-validate-ip-perl libdata-validate-uri-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libencode-locale-perl libexception-class-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfile-listing-perl libfont-ttf-perl libhtml-form-perl libhtml-html5-entities-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tokeparser-simple-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libhttp-server-simple-perl libimport-into-perl libio-html-perl libio-interactive-perl libio-socket-ssl-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-moreutils-perl liblist-moreutils-xs-perl liblist-someutils-perl liblist-utilsby-perl liblwp-mediatypes-perl liblwp-protocol-https-perl liblz1 liblzo2-2 libmarkdown2 libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnet-http-perl libnet-ipv6addr-perl libnet-netmask-perl libnet-ssleay-perl libnetaddr-ip-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl libregexp-ipv6-perl libregexp-wildcards-perl librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libsyntax-keyword-try-perl libterm-readkey-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libwww-mechanize-perl libwww-perl libwww-robotrules-perl libxs-parse-keyword-perl libyaml-0-2 libyaml-libyaml-perl lintian lzop netbase openssl patchutils perl-openssl-defaults plzip sbuild-build-depends-lintian-dummy:amd64 t1utils unzip 0 upgraded, 131 newly installed, 0 to remove and 0 not upgraded. Need to get 13.1 MB of archives. After this operation, 50.0 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-lintian-dummy 0.invalid.0 [852 B] Get:2 http://mirror.einval.org/debian sid/main arm64 netbase all 6.3 [19.9 kB] Get:3 http://mirror.einval.org/debian sid/main arm64 openssl arm64 3.0.5-1 [1392 kB] Get:4 http://mirror.einval.org/debian sid/main arm64 ca-certificates all 20211016 [156 kB] Get:5 http://mirror.einval.org/debian sid/main arm64 diffstat arm64 1.64-1 [34.6 kB] Get:6 http://mirror.einval.org/debian sid/main arm64 libassuan0 arm64 2.5.5-4 [48.9 kB] Get:7 http://mirror.einval.org/debian sid/main arm64 gpgconf arm64 2.2.35-3 [570 kB] Get:8 http://mirror.einval.org/debian sid/main arm64 gpg arm64 2.2.35-3 [916 kB] Get:9 http://mirror.einval.org/debian sid/main arm64 iso-codes all 4.11.0-1 [2834 kB] Get:10 http://mirror.einval.org/debian sid/main arm64 libaliased-perl all 0.34-2 [14.2 kB] Get:11 http://mirror.einval.org/debian sid/main arm64 libapt-pkg-perl arm64 0.1.40+b1 [69.2 kB] Get:12 http://mirror.einval.org/debian sid/main 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http://mirror.einval.org/debian sid/main arm64 libberkeleydb-perl arm64 0.64-1+b2 [120 kB] Get:23 http://mirror.einval.org/debian sid/main arm64 libcapture-tiny-perl all 0.48-1 [26.0 kB] Get:24 http://mirror.einval.org/debian sid/main arm64 libhtml-tagset-perl all 3.20-4 [13.0 kB] Get:25 http://mirror.einval.org/debian sid/main arm64 libregexp-ipv6-perl all 0.03-3 [5212 B] Get:26 http://mirror.einval.org/debian sid/main arm64 liburi-perl all 5.12-1 [93.7 kB] Get:27 http://mirror.einval.org/debian sid/main arm64 libhtml-parser-perl arm64 3.78-1 [103 kB] Get:28 http://mirror.einval.org/debian sid/main arm64 libcgi-pm-perl all 4.54-1 [224 kB] Get:29 http://mirror.einval.org/debian sid/main arm64 libclass-data-inheritable-perl all 0.08-3 [8588 B] Get:30 http://mirror.einval.org/debian sid/main arm64 libclass-method-modifiers-perl all 2.13-1 [19.2 kB] Get:31 http://mirror.einval.org/debian sid/main arm64 libclass-xsaccessor-perl arm64 1.19-3+b8 [36.4 kB] Get:32 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http://mirror.einval.org/debian sid/main arm64 libtext-glob-perl all 0.11-2 [8992 B] Get:63 http://mirror.einval.org/debian sid/main arm64 libfile-find-rule-perl all 0.34-2 [28.4 kB] Get:64 http://mirror.einval.org/debian sid/main arm64 libtimedate-perl all 2.3300-2 [39.3 kB] Get:65 http://mirror.einval.org/debian sid/main arm64 libhttp-date-perl all 6.05-1 [10.4 kB] Get:66 http://mirror.einval.org/debian sid/main arm64 libfile-listing-perl all 6.15-1 [12.6 kB] Get:67 http://mirror.einval.org/debian sid/main arm64 libfont-ttf-perl all 1.06-2 [318 kB] Get:68 http://mirror.einval.org/debian sid/main arm64 libio-html-perl all 1.004-3 [16.2 kB] Get:69 http://mirror.einval.org/debian sid/main arm64 liblwp-mediatypes-perl all 6.04-1 [19.9 kB] Get:70 http://mirror.einval.org/debian sid/main arm64 libhttp-message-perl all 6.37-1 [80.9 kB] Get:71 http://mirror.einval.org/debian sid/main arm64 libhtml-form-perl all 6.07-1 [22.9 kB] Get:72 http://mirror.einval.org/debian sid/main arm64 libhtml-html5-entities-perl all 0.004-2 [21.6 kB] Get:73 http://mirror.einval.org/debian sid/main arm64 libhtml-tree-perl all 5.07-2 [213 kB] Get:74 http://mirror.einval.org/debian sid/main arm64 libhttp-cookies-perl all 6.10-1 [19.6 kB] Get:75 http://mirror.einval.org/debian sid/main arm64 libhttp-negotiate-perl all 6.01-1 [12.8 kB] Get:76 http://mirror.einval.org/debian sid/main arm64 perl-openssl-defaults arm64 7+b1 [7924 B] Get:77 http://mirror.einval.org/debian sid/main arm64 libnet-ssleay-perl arm64 1.92-2 [338 kB] Get:78 http://mirror.einval.org/debian sid/main arm64 libio-socket-ssl-perl all 2.074-2 [220 kB] Get:79 http://mirror.einval.org/debian sid/main arm64 libnet-http-perl all 6.22-1 [25.3 kB] Get:80 http://mirror.einval.org/debian sid/main arm64 liblwp-protocol-https-perl all 6.10-1 [12.2 kB] Get:81 http://mirror.einval.org/debian sid/main arm64 libwww-robotrules-perl all 6.02-1 [12.9 kB] Get:82 http://mirror.einval.org/debian sid/main arm64 libwww-perl all 6.67-1 [194 kB] Get:83 http://mirror.einval.org/debian sid/main arm64 libhtml-tokeparser-simple-perl all 3.16-4 [39.1 kB] Get:84 http://mirror.einval.org/debian sid/main arm64 libhttp-server-simple-perl all 0.52-2 [29.4 kB] Get:85 http://mirror.einval.org/debian sid/main arm64 libimport-into-perl all 1.002005-2 [11.3 kB] Get:86 http://mirror.einval.org/debian sid/main arm64 libio-interactive-perl all 1.023-1 [11.5 kB] Get:87 http://mirror.einval.org/debian sid/main arm64 libipc-run3-perl all 0.048-2 [34.2 kB] Get:88 http://mirror.einval.org/debian sid/main arm64 libjson-maybexs-perl all 1.004003-1 [13.1 kB] Get:89 http://mirror.einval.org/debian sid/main arm64 liblist-compare-perl all 0.55-1 [66.9 kB] Get:90 http://mirror.einval.org/debian sid/main arm64 liblist-someutils-perl all 0.58-1 [36.5 kB] Get:91 http://mirror.einval.org/debian sid/main arm64 liblist-utilsby-perl all 0.12-1 [16.1 kB] Get:92 http://mirror.einval.org/debian sid/main arm64 liblz1 arm64 1.13-4 [40.8 kB] Get:93 http://mirror.einval.org/debian sid/main arm64 liblzo2-2 arm64 2.10-2 [51.8 kB] Get:94 http://mirror.einval.org/debian sid/main arm64 libmarkdown2 arm64 2.2.7-2 [34.1 kB] Get:95 http://mirror.einval.org/debian sid/main arm64 libmldbm-perl all 2.05-3 [18.8 kB] Get:96 http://mirror.einval.org/debian sid/main arm64 librole-tiny-perl all 2.002004-1 [21.4 kB] Get:97 http://mirror.einval.org/debian sid/main arm64 libsub-quote-perl all 2.006006-1 [21.0 kB] Get:98 http://mirror.einval.org/debian sid/main arm64 libmoo-perl all 2.005004-3 [60.5 kB] Get:99 http://mirror.einval.org/debian sid/main arm64 libstrictures-perl all 2.000006-1 [18.6 kB] Get:100 http://mirror.einval.org/debian sid/main arm64 libmoox-aliases-perl all 0.001006-2 [7156 B] Get:101 http://mirror.einval.org/debian sid/main arm64 libmouse-perl arm64 2.5.10-1+b2 [171 kB] Get:102 http://mirror.einval.org/debian sid/main arm64 libpackage-stash-perl all 0.40-1 [22.0 kB] Get:103 http://mirror.einval.org/debian sid/main arm64 libsub-identify-perl arm64 0.14-2 [11.9 kB] Get:104 http://mirror.einval.org/debian sid/main arm64 libsub-name-perl arm64 0.26-1+b2 [13.5 kB] Get:105 http://mirror.einval.org/debian sid/main arm64 libnamespace-clean-perl all 0.27-2 [17.8 kB] Get:106 http://mirror.einval.org/debian sid/main arm64 libpath-tiny-perl all 0.122-1 [56.0 kB] Get:107 http://mirror.einval.org/debian sid/main arm64 libperlio-gzip-perl arm64 0.20-1 [17.1 kB] Get:108 http://mirror.einval.org/debian sid/main arm64 libperlio-utf8-strict-perl arm64 0.009-1+b1 [11.9 kB] Get:109 http://mirror.einval.org/debian sid/main arm64 libproc-processtable-perl arm64 0.634-1+b1 [46.4 kB] Get:110 http://mirror.einval.org/debian sid/main arm64 libregexp-wildcards-perl all 1.05-2 [14.1 kB] Get:111 http://mirror.einval.org/debian sid/main arm64 libsereal-decoder-perl arm64 4.025+ds-1 [97.7 kB] Get:112 http://mirror.einval.org/debian sid/main arm64 libsereal-encoder-perl arm64 4.025+ds-1 [98.4 kB] Get:113 http://mirror.einval.org/debian sid/main arm64 libsort-versions-perl all 1.62-2 [10.7 kB] Get:114 http://mirror.einval.org/debian sid/main arm64 libxs-parse-keyword-perl arm64 0.25-1 [52.2 kB] Get:115 http://mirror.einval.org/debian sid/main arm64 libsyntax-keyword-try-perl arm64 0.27-1 [28.2 kB] Get:116 http://mirror.einval.org/debian sid/main arm64 libterm-readkey-perl arm64 2.38-1+b3 [27.2 kB] Get:117 http://mirror.einval.org/debian sid/main arm64 libtext-levenshteinxs-perl arm64 0.03-5 [8704 B] Get:118 http://mirror.einval.org/debian sid/main arm64 libtext-markdown-discount-perl arm64 0.13-1+b1 [13.4 kB] Get:119 http://mirror.einval.org/debian sid/main arm64 libtext-xslate-perl arm64 3.5.9-1+b1 [194 kB] Get:120 http://mirror.einval.org/debian sid/main arm64 libtime-duration-perl all 1.21-1 [13.7 kB] Get:121 http://mirror.einval.org/debian sid/main arm64 libtime-moment-perl arm64 0.44-1+b4 [74.7 kB] Get:122 http://mirror.einval.org/debian sid/main arm64 libunicode-utf8-perl arm64 0.62-1+b3 [19.8 kB] Get:123 http://mirror.einval.org/debian sid/main arm64 libwww-mechanize-perl all 2.12-1 [118 kB] Get:124 http://mirror.einval.org/debian sid/main arm64 libyaml-0-2 arm64 0.2.5-1 [50.4 kB] Get:125 http://mirror.einval.org/debian sid/main arm64 libyaml-libyaml-perl arm64 0.83+ds-1+b1 [34.4 kB] Get:126 http://mirror.einval.org/debian sid/main arm64 plzip arm64 1.10-4 [60.7 kB] Get:127 http://mirror.einval.org/debian sid/main arm64 lzop arm64 1.04-2 [82.8 kB] Get:128 http://mirror.einval.org/debian sid/main arm64 patchutils arm64 0.4.2-1 [73.5 kB] Get:129 http://mirror.einval.org/debian sid/main arm64 t1utils arm64 1.41-4 [59.8 kB] Get:130 http://mirror.einval.org/debian sid/main arm64 unzip arm64 6.0-26 [165 kB] Get:131 http://mirror.einval.org/debian sid/main arm64 lintian all 2.115.2 [1416 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 13.1 MB in 0s (46.9 MB/s) Selecting previously unselected package netbase. (Reading database ... 40068 files and directories currently installed.) Preparing to unpack .../000-netbase_6.3_all.deb ... Unpacking netbase (6.3) ... Selecting previously unselected package openssl. Preparing to unpack .../001-openssl_3.0.5-1_arm64.deb ... Unpacking openssl (3.0.5-1) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../002-ca-certificates_20211016_all.deb ... Unpacking ca-certificates (20211016) ... Selecting previously unselected package diffstat. Preparing to unpack .../003-diffstat_1.64-1_arm64.deb ... Unpacking diffstat (1.64-1) ... Selecting previously unselected package libassuan0:arm64. Preparing to unpack .../004-libassuan0_2.5.5-4_arm64.deb ... Unpacking libassuan0:arm64 (2.5.5-4) ... Selecting previously unselected package gpgconf. Preparing to unpack .../005-gpgconf_2.2.35-3_arm64.deb ... Unpacking gpgconf (2.2.35-3) ... Selecting previously unselected package gpg. Preparing to unpack .../006-gpg_2.2.35-3_arm64.deb ... 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Setting up plzip (1.10-4) ... update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip (lzip) in auto mode update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip-compressor (lzip-compressor) in auto mode update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip-decompressor (lzip-decompressor) in auto mode Setting up libunicode-utf8-perl (0.62-1+b3) ... Setting up libmouse-perl (2.5.10-1+b2) ... Setting up libdata-messagepack-perl (1.02-1) ... Setting up libdynaloader-functions-perl (0.003-2) ... Setting up libtext-glob-perl (0.11-2) ... Setting up libclass-method-modifiers-perl (2.13-1) ... Setting up liblist-compare-perl (0.55-1) ... Setting up libclone-perl (0.45-1+b2) ... Setting up libyaml-0-2:arm64 (0.2.5-1) ... Setting up libsub-identify-perl (0.14-2) ... Setting up libcpanel-json-xs-perl:arm64 (4.30-1) ... Setting up libhtml-tagset-perl (3.20-4) ... Setting up libdevel-size-perl (0.83-1+b3) ... Setting up unzip (6.0-26) ... Setting up liblwp-mediatypes-perl (6.04-1) ... Setting up libyaml-libyaml-perl (0.83+ds-1+b1) ... Setting up libio-interactive-perl (1.023-1) ... Setting up libtry-tiny-perl (0.31-1) ... Setting up perl-openssl-defaults:arm64 (7+b1) ... Setting up libmldbm-perl (2.05-3) ... Setting up liblzo2-2:arm64 (2.10-2) ... Setting up libtime-moment-perl (0.44-1+b4) ... Setting up libencode-locale-perl (1.05-2) ... Setting up libassuan0:arm64 (2.5.5-4) ... Setting up libconfig-tiny-perl (2.28-1) ... Setting up libsereal-encoder-perl:arm64 (4.025+ds-1) ... Setting up liblist-utilsby-perl (0.12-1) ... Setting up libnet-netmask-perl (2.0001-1) ... Setting up libsub-install-perl (0.928-2) ... Setting up libnumber-compare-perl (0.03-2) ... Setting up patchutils (0.4.2-1) ... Setting up libjson-maybexs-perl (1.004003-1) ... Setting up libnetaddr-ip-perl (4.079+dfsg-2) ... Setting up libclass-data-inheritable-perl (0.08-3) ... Setting up libxs-parse-keyword-perl (0.25-1) ... 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Setting up libproc-processtable-perl:arm64 (0.634-1+b1) ... Setting up libpath-tiny-perl (0.122-1) ... Setting up lzop (1.04-2) ... Setting up gpgconf (2.2.35-3) ... Setting up librole-tiny-perl (2.002004-1) ... Setting up libipc-run3-perl (0.048-2) ... Setting up libregexp-wildcards-perl (1.05-2) ... Setting up libaliased-perl (0.34-2) ... Setting up netbase (6.3) ... Setting up libstrictures-perl (2.000006-1) ... Setting up libsub-quote-perl (2.006006-1) ... Setting up libdevel-stacktrace-perl (2.0400-1) ... Setting up libclass-xsaccessor-perl (1.19-3+b8) ... Setting up libsort-versions-perl (1.62-2) ... Setting up libexporter-tiny-perl (1.002002-1) ... Setting up libterm-readkey-perl (2.38-1+b3) ... Setting up libfont-ttf-perl (1.06-2) ... Setting up openssl (3.0.5-1) ... Setting up libtext-levenshteinxs-perl (0.03-5) ... Setting up libperlio-gzip-perl (0.20-1) ... Setting up libhtml-html5-entities-perl (0.004-2) ... Setting up libsereal-decoder-perl (4.025+ds-1) ... Setting up libmarkdown2:arm64 (2.2.7-2) ... Setting up liburi-perl (5.12-1) ... Setting up iso-codes (4.11.0-1) ... Setting up libnet-ipv6addr-perl (1.02-1) ... Setting up gpg (2.2.35-3) ... Setting up libdata-validate-ip-perl (0.30-1) ... Setting up libemail-address-xs-perl (1.04-1+b4) ... Setting up libnet-ssleay-perl:arm64 (1.92-2) ... Setting up libhttp-date-perl (6.05-1) ... Setting up libfile-basedir-perl (0.09-1) ... Setting up libfile-listing-perl (6.15-1) ... Setting up liblist-moreutils-perl (0.430-2) ... Setting up libnet-http-perl (6.22-1) ... Setting up libtext-markdown-discount-perl:arm64 (0.13-1+b1) ... Setting up libexception-class-perl (1.45-1) ... Setting up libdevel-callchecker-perl (0.008-1+b3) ... Setting up ca-certificates (20211016) ... Updating certificates in /etc/ssl/certs... 127 added, 0 removed; done. Setting up libdata-validate-uri-perl (0.07-2) ... Setting up libdata-optlist-perl (0.112-1) ... Setting up libwww-robotrules-perl (6.02-1) ... Setting up libhtml-parser-perl:arm64 (3.78-1) ... Setting up libio-socket-ssl-perl (2.074-2) ... Setting up libsub-exporter-perl (0.988-1) ... Setting up libhttp-message-perl (6.37-1) ... Setting up libhtml-form-perl (6.07-1) ... Setting up libiterator-perl (0.03+ds1-2) ... Setting up libhttp-negotiate-perl (6.01-1) ... Setting up libiterator-util-perl (0.02+ds1-2) ... Setting up libhttp-cookies-perl (6.10-1) ... Setting up libhtml-tree-perl (5.07-2) ... Setting up libparams-classify-perl:arm64 (0.015-2) ... Setting up libcgi-pm-perl (4.54-1) ... Setting up libmodule-runtime-perl (0.016-2) ... Setting up libconst-fast-perl (0.014-2) ... Setting up libhttp-server-simple-perl (0.52-2) ... Setting up libdata-dpath-perl (0.58-1) ... Setting up libmodule-implementation-perl (0.09-2) ... Setting up libpackage-stash-perl (0.40-1) ... Setting up libimport-into-perl (1.002005-2) ... Setting up libmoo-perl (2.005004-3) ... Setting up liblist-someutils-perl (0.58-1) ... Setting up libmoox-aliases-perl (0.001006-2) ... Setting up libb-hooks-endofscope-perl (0.26-1) ... Setting up libnamespace-clean-perl (0.27-2) ... Setting up libwww-perl (6.67-1) ... Setting up libhtml-tokeparser-simple-perl (3.16-4) ... Setting up libwww-mechanize-perl (2.12-1) ... Setting up liblwp-protocol-https-perl (6.10-1) ... Processing triggers for libc-bin (2.33-8) ... Processing triggers for man-db (2.10.2-1) ... Not building database; man-db/auto-update is not 'true'. Processing triggers for sgml-base (1.30) ... Setting up lintian (2.115.2) ... Setting up sbuild-build-depends-lintian-dummy:amd64 (0.invalid.0) ... Processing triggers for ca-certificates (20211016) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. I: Lintian run was successful. +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: arm64 Build Profiles: cross nocheck Build Type: any Build-Space: 643768 Build-Time: 1913 Distribution: unstable Foreign Architectures: amd64 Host Architecture: amd64 Install-Time: 93 Job: libpwizlite_3.0.4-1 Lintian: pass Machine Architecture: arm64 Package: libpwizlite Package-Time: 2052 Source-Version: 3.0.4-1 Space: 643768 Status: successful Version: 3.0.4-1 -------------------------------------------------------------------------------- Finished at 2022-07-29T05:23:14Z Build needed 00:34:12, 643768k disk space