sbuild (Debian sbuild) 0.85.0 (04 January 2023) on debian-ci-siliconvalley +==============================================================================+ | libpwizlite 3.0.8-1 (arm64) Fri, 31 May 2024 10:28:11 +0000 | +==============================================================================+ Package: libpwizlite Version: 3.0.8-1 Source Version: 3.0.8-1 Distribution: unstable Machine Architecture: amd64 Host Architecture: arm64 Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/sid-amd64-sbuild-69bf0794-84ae-4a73-aaa5-82f3bf4a7261' with '<>' I: NOTICE: Log filtering will replace 'build/libpwizlite-NBHbSC/resolver-yDKSh0' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://localhost:3142/debian sid InRelease [198 kB] Get:2 http://localhost:3142/debian sid/main Sources.diff/Index [63.6 kB] Get:3 http://localhost:3142/debian sid/main amd64 Packages.diff/Index [63.6 kB] Get:4 http://localhost:3142/debian sid/main Sources T-2024-05-31-0805.11-F-2024-05-31-0205.30.pdiff [13.5 kB] Get:5 http://localhost:3142/debian sid/main amd64 Packages T-2024-05-31-0805.11-F-2024-05-31-0205.30.pdiff [17.3 kB] Get:4 http://localhost:3142/debian sid/main Sources T-2024-05-31-0805.11-F-2024-05-31-0205.30.pdiff [13.5 kB] Get:6 http://localhost:3142/debian sid/main arm64 Packages [9760 kB] Get:5 http://localhost:3142/debian sid/main amd64 Packages T-2024-05-31-0805.11-F-2024-05-31-0205.30.pdiff [17.3 kB] Fetched 10.1 MB in 3s (3801 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: libperl5.38t64 perl perl-base perl-modules-5.38 4 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 9059 kB of archives. After this operation, 6144 B of additional disk space will be used. Get:1 http://localhost:3142/debian sid/main amd64 libperl5.38t64 amd64 5.38.2-5 [4275 kB] Get:2 http://localhost:3142/debian sid/main amd64 perl amd64 5.38.2-5 [236 kB] Get:3 http://localhost:3142/debian sid/main amd64 perl-base amd64 5.38.2-5 [1643 kB] Get:4 http://localhost:3142/debian sid/main amd64 perl-modules-5.38 all 5.38.2-5 [2905 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 9059 kB in 0s (176 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12873 files and directories currently installed.) Preparing to unpack .../libperl5.38t64_5.38.2-5_amd64.deb ... Unpacking libperl5.38t64:amd64 (5.38.2-5) over (5.38.2-4) ... Preparing to unpack .../perl_5.38.2-5_amd64.deb ... Unpacking perl (5.38.2-5) over (5.38.2-4) ... Preparing to unpack .../perl-base_5.38.2-5_amd64.deb ... Unpacking perl-base (5.38.2-5) over (5.38.2-4) ... Setting up perl-base (5.38.2-5) ... (Reading database ... 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Processing triggers for libc-bin (2.38-11) ... +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'libpwizlite' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/debichem-team/libpwizlite.git Please use: git clone https://salsa.debian.org/debichem-team/libpwizlite.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 843 kB of source archives. Get:1 http://localhost:3142/debian sid/main libpwizlite 3.0.8-1 (dsc) [2218 B] Get:2 http://localhost:3142/debian sid/main libpwizlite 3.0.8-1 (tar) [832 kB] Get:3 http://localhost:3142/debian sid/main libpwizlite 3.0.8-1 (diff) [8624 B] Fetched 843 kB in 0s (15.9 MB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/libpwizlite-NBHbSC/libpwizlite-3.0.8' with '<>' I: NOTICE: Log filtering will replace 'build/libpwizlite-NBHbSC' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), cmake, dh-exec, dpkg-dev (>= 1.18.25), libboost-dev, libboost-thread-dev, libboost-filesystem-dev, libboost-iostreams-dev, libboost-chrono-dev, zlib1g-dev, python3-docutils, libhdf5-dev, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-arm64:amd64, libc-dev:arm64, libstdc++-dev:arm64 Filtered Build-Depends: debhelper-compat (= 13), cmake, dh-exec, dpkg-dev (>= 1.18.25), libboost-dev, libboost-thread-dev, libboost-filesystem-dev, libboost-iostreams-dev, libboost-chrono-dev, zlib1g-dev, python3-docutils, libhdf5-dev, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-arm64:amd64, libc-dev:arm64, libstdc++-dev:arm64 dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [609 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [901 B] Get:5 copy:/<>/apt_archive ./ Packages [945 B] Fetched 2455 B in 0s (0 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Execute external solver... The following package was automatically installed and is no longer required: mount Use 'apt autoremove' to remove it. The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-aarch64-linux-gnu bsdextrautils cmake cmake-data cpp-13-aarch64-linux-gnu cpp-aarch64-linux-gnu cross-config crossbuild-essential-arm64 debhelper dh-autoreconf dh-exec dh-strip-nondeterminism docutils-common dpkg-cross dwz fakeroot file g++-13-aarch64-linux-gnu g++-aarch64-linux-gnu gcc-13-aarch64-linux-gnu gcc-13-aarch64-linux-gnu-base gcc-13-base:arm64 gcc-13-cross-base gcc-14-base:arm64 gcc-14-cross-base gcc-aarch64-linux-gnu gettext gettext-base groff-base hdf5-helpers:arm64 icu-devtools intltool-debian libaec-dev:arm64 libaec0:arm64 libarchive-zip-perl libarchive13t64 libasan8:arm64 libasan8-arm64-cross libatomic1:arm64 libatomic1-arm64-cross libboost-atomic1.83-dev:arm64 libboost-atomic1.83.0:arm64 libboost-chrono-dev:arm64 libboost-chrono1.83-dev:arm64 libboost-chrono1.83.0t64:arm64 libboost-date-time1.83-dev:arm64 libboost-date-time1.83.0:arm64 libboost-dev:arm64 libboost-filesystem-dev:arm64 libboost-filesystem1.83-dev:arm64 libboost-filesystem1.83.0:arm64 libboost-iostreams-dev:arm64 libboost-iostreams1.83-dev:arm64 libboost-iostreams1.83.0:arm64 libboost-regex1.83-dev:arm64 libboost-regex1.83.0:arm64 libboost-serialization1.83-dev:arm64 libboost-serialization1.83.0:arm64 libboost-system1.83-dev:arm64 libboost-system1.83.0:arm64 libboost-thread-dev:arm64 libboost-thread1.83-dev:arm64 libboost-thread1.83.0:arm64 libboost1.83-dev:arm64 libbrotli1 libbrotli1:arm64 libbz2-1.0:arm64 libc6:arm64 libc6-arm64-cross libc6-dev:arm64 libc6-dev-arm64-cross libcom-err2 libcom-err2:arm64 libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev:arm64 libcrypt1:arm64 libcurl4-openssl-dev:arm64 libcurl4t64 libcurl4t64:arm64 libdb5.3t64:arm64 libdebhelper-perl libdebian-dpkgcross-perl libelf1t64 libexpat1 libfakeroot libffi8:arm64 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-13-dev:arm64 libgcc-13-dev-arm64-cross libgcc-s1:arm64 libgcc-s1-arm64-cross libgfortran5:arm64 libgmp10:arm64 libgnutls30t64:arm64 libgomp1:arm64 libgomp1-arm64-cross libgssapi-krb5-2 libgssapi-krb5-2:arm64 libhdf5-103-1t64:arm64 libhdf5-cpp-103-1t64:arm64 libhdf5-dev:arm64 libhdf5-fortran-102t64:arm64 libhdf5-hl-100t64:arm64 libhdf5-hl-cpp-100t64:arm64 libhdf5-hl-fortran-100t64:arm64 libhogweed6t64:arm64 libhwasan0:arm64 libhwasan0-arm64-cross libicu-dev:arm64 libicu72 libicu72:arm64 libidn2-0:arm64 libio-string-perl libitm1:arm64 libitm1-arm64-cross libjpeg-dev:arm64 libjpeg62-turbo:arm64 libjpeg62-turbo-dev:arm64 libjsoncpp25 libk5crypto3 libk5crypto3:arm64 libkeyutils1 libkeyutils1:arm64 libkrb5-3 libkrb5-3:arm64 libkrb5support0 libkrb5support0:arm64 libldap-2.5-0 libldap-2.5-0:arm64 liblocale-gettext-perl liblsan0:arm64 liblsan0-arm64-cross liblzma5:arm64 libmagic-mgc libmagic1t64 libncursesw6 libnettle8t64:arm64 libnghttp2-14 libnghttp2-14:arm64 libp11-kit0:arm64 libpipeline1 libproc2-0 libpsl5t64 libpsl5t64:arm64 libpython3-stdlib libpython3.11-minimal libpython3.11-stdlib libreadline8t64 librhash0 librtmp1 librtmp1:arm64 libsasl2-2 libsasl2-2:arm64 libsasl2-modules-db libsasl2-modules-db:arm64 libsqlite3-0 libssh2-1t64 libssh2-1t64:arm64 libssl-dev:arm64 libssl3t64:arm64 libstdc++-13-dev:arm64 libstdc++-13-dev-arm64-cross libstdc++6:arm64 libstdc++6-arm64-cross libsz2:arm64 libtasn1-6:arm64 libtool libtsan2:arm64 libtsan2-arm64-cross libubsan1:arm64 libubsan1-arm64-cross libuchardet0 libunistring5:arm64 libuv1t64 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl libzstd1:arm64 m4 man-db media-types netbase po-debconf procps python3 python3-docutils python3-minimal python3-roman python3.11 python3.11-minimal readline-common sensible-utils sgml-base ucf xml-core zlib1g:arm64 zlib1g-dev:arm64 Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc cmake-doc cmake-format elpa-cmake-mode ninja-build gcc-13-locales cpp-13-doc cpp-doc dh-make binutils-multiarch gcc-13-doc manpages-dev flex bison gdb-aarch64-linux-gnu gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff lrzip libboost-doc:arm64 libboost1.83-doc:arm64 libboost-container1.83-dev:arm64 libboost-context1.83-dev:arm64 libboost-contract1.83-dev:arm64 libboost-coroutine1.83-dev:arm64 libboost-exception1.83-dev:arm64 libboost-fiber1.83-dev:arm64 libboost-graph-parallel1.83-dev:arm64 libboost-graph1.83-dev:arm64 libboost-json1.83-dev:arm64 libboost-locale1.83-dev:arm64 libboost-log1.83-dev:arm64 libboost-math1.83-dev:arm64 libboost-mpi-python1.83-dev:arm64 libboost-mpi1.83-dev:arm64 libboost-nowide1.83-dev:arm64 libboost-numpy1.83-dev:arm64 libboost-program-options1.83-dev:arm64 libboost-python1.83-dev:arm64 libboost-random1.83-dev:arm64 libboost-stacktrace1.83-dev:arm64 libboost-test1.83-dev:arm64 libboost-timer1.83-dev:arm64 libboost-type-erasure1.83-dev:arm64 libboost-url1.83-dev:arm64 libboost-wave1.83-dev:arm64 libboost1.83-tools-dev:arm64 libmpfrc++-dev:arm64 libntl-dev:arm64 glibc-doc:arm64 libc-l10n:arm64 locales:arm64 libnss-nis:arm64 libnss-nisplus:arm64 manpages-dev:arm64 libcurl4-doc:arm64 libidn-dev:arm64 libkrb5-dev:arm64 libldap2-dev:arm64 librtmp-dev:arm64 libssh2-1-dev:arm64 pkgconf:arm64 gnutls-bin:arm64 krb5-doc krb5-user krb5-doc:arm64 krb5-user:arm64 libhdf5-doc:arm64 icu-doc:arm64 libssl-doc:arm64 libstdc++-13-doc:arm64 libtool-doc gfortran | fortran95-compiler gcj-jdk libyaml-shell-perl m4-doc apparmor less www-browser libmail-box-perl python3-doc python3-tk python3-venv docutils-doc fonts-linuxlibertine | ttf-linux-libertine texlive-lang-french texlive-latex-base texlive-latex-recommended python3.11-venv python3.11-doc binfmt-support readline-doc sgml-base-doc Recommended packages: curl | wget | lynx ca-certificates ca-certificates:arm64 libarchive-cpio-perl krb5-locales krb5-locales:arm64 libldap-common libldap-common:arm64 libgpm2 publicsuffix publicsuffix:arm64 libsasl2-modules libsasl2-modules:arm64 libltdl-dev libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl libmail-sendmail-perl psmisc libpaper-utils python3-pil python3-pygments The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-aarch64-linux-gnu bsdextrautils cmake cmake-data cpp-13-aarch64-linux-gnu cpp-aarch64-linux-gnu cross-config crossbuild-essential-arm64 debhelper dh-autoreconf dh-exec dh-strip-nondeterminism docutils-common dpkg-cross dwz fakeroot file g++-13-aarch64-linux-gnu g++-aarch64-linux-gnu gcc-13-aarch64-linux-gnu gcc-13-aarch64-linux-gnu-base gcc-13-base:arm64 gcc-13-cross-base gcc-14-base:arm64 gcc-14-cross-base gcc-aarch64-linux-gnu gettext gettext-base groff-base hdf5-helpers:arm64 icu-devtools intltool-debian libaec-dev:arm64 libaec0:arm64 libarchive-zip-perl libarchive13t64 libasan8:arm64 libasan8-arm64-cross libatomic1:arm64 libatomic1-arm64-cross libboost-atomic1.83-dev:arm64 libboost-atomic1.83.0:arm64 libboost-chrono-dev:arm64 libboost-chrono1.83-dev:arm64 libboost-chrono1.83.0t64:arm64 libboost-date-time1.83-dev:arm64 libboost-date-time1.83.0:arm64 libboost-dev:arm64 libboost-filesystem-dev:arm64 libboost-filesystem1.83-dev:arm64 libboost-filesystem1.83.0:arm64 libboost-iostreams-dev:arm64 libboost-iostreams1.83-dev:arm64 libboost-iostreams1.83.0:arm64 libboost-regex1.83-dev:arm64 libboost-regex1.83.0:arm64 libboost-serialization1.83-dev:arm64 libboost-serialization1.83.0:arm64 libboost-system1.83-dev:arm64 libboost-system1.83.0:arm64 libboost-thread-dev:arm64 libboost-thread1.83-dev:arm64 libboost-thread1.83.0:arm64 libboost1.83-dev:arm64 libbrotli1 libbrotli1:arm64 libbz2-1.0:arm64 libc6:arm64 libc6-arm64-cross libc6-dev:arm64 libc6-dev-arm64-cross libcom-err2 libcom-err2:arm64 libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev:arm64 libcrypt1:arm64 libcurl4-openssl-dev:arm64 libcurl4t64 libcurl4t64:arm64 libdb5.3t64:arm64 libdebhelper-perl libdebian-dpkgcross-perl libelf1t64 libexpat1 libfakeroot libffi8:arm64 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-13-dev:arm64 libgcc-13-dev-arm64-cross libgcc-s1:arm64 libgcc-s1-arm64-cross libgfortran5:arm64 libgmp10:arm64 libgnutls30t64:arm64 libgomp1:arm64 libgomp1-arm64-cross libgssapi-krb5-2 libgssapi-krb5-2:arm64 libhdf5-103-1t64:arm64 libhdf5-cpp-103-1t64:arm64 libhdf5-dev:arm64 libhdf5-fortran-102t64:arm64 libhdf5-hl-100t64:arm64 libhdf5-hl-cpp-100t64:arm64 libhdf5-hl-fortran-100t64:arm64 libhogweed6t64:arm64 libhwasan0:arm64 libhwasan0-arm64-cross libicu-dev:arm64 libicu72 libicu72:arm64 libidn2-0:arm64 libio-string-perl libitm1:arm64 libitm1-arm64-cross libjpeg-dev:arm64 libjpeg62-turbo:arm64 libjpeg62-turbo-dev:arm64 libjsoncpp25 libk5crypto3 libk5crypto3:arm64 libkeyutils1 libkeyutils1:arm64 libkrb5-3 libkrb5-3:arm64 libkrb5support0 libkrb5support0:arm64 libldap-2.5-0 libldap-2.5-0:arm64 liblocale-gettext-perl liblsan0:arm64 liblsan0-arm64-cross liblzma5:arm64 libmagic-mgc libmagic1t64 libncursesw6 libnettle8t64:arm64 libnghttp2-14 libnghttp2-14:arm64 libp11-kit0:arm64 libpipeline1 libproc2-0 libpsl5t64 libpsl5t64:arm64 libpython3-stdlib libpython3.11-minimal libpython3.11-stdlib libreadline8t64 librhash0 librtmp1 librtmp1:arm64 libsasl2-2 libsasl2-2:arm64 libsasl2-modules-db libsasl2-modules-db:arm64 libsqlite3-0 libssh2-1t64 libssh2-1t64:arm64 libssl-dev:arm64 libssl3t64:arm64 libstdc++-13-dev:arm64 libstdc++-13-dev-arm64-cross libstdc++6:arm64 libstdc++6-arm64-cross libsz2:arm64 libtasn1-6:arm64 libtool libtsan2:arm64 libtsan2-arm64-cross libubsan1:arm64 libubsan1-arm64-cross libuchardet0 libunistring5:arm64 libuv1t64 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl libzstd1:arm64 m4 man-db media-types netbase po-debconf procps python3 python3-docutils python3-minimal python3-roman python3.11 python3.11-minimal readline-common sbuild-build-depends-main-dummy:arm64 sensible-utils sgml-base ucf xml-core zlib1g:arm64 zlib1g-dev:arm64 0 upgraded, 209 newly installed, 0 to remove and 0 not upgraded. Need to get 174 MB of archives. After this operation, 860 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [1008 B] Get:2 http://localhost:3142/debian sid/main amd64 liblocale-gettext-perl amd64 1.07-7 [15.0 kB] Get:3 http://localhost:3142/debian sid/main amd64 libpython3.11-minimal amd64 3.11.9-1 [817 kB] Get:4 http://localhost:3142/debian sid/main amd64 libexpat1 amd64 2.6.2-1 [103 kB] Get:5 http://localhost:3142/debian sid/main amd64 python3.11-minimal amd64 3.11.9-1 [1879 kB] Get:6 http://localhost:3142/debian sid/main amd64 python3-minimal amd64 3.11.8-1 [26.3 kB] Get:7 http://localhost:3142/debian sid/main amd64 media-types all 10.1.0 [26.9 kB] Get:8 http://localhost:3142/debian sid/main amd64 netbase all 6.4 [12.8 kB] Get:9 http://localhost:3142/debian sid/main amd64 libncursesw6 amd64 6.5-2 [135 kB] Get:10 http://localhost:3142/debian sid/main amd64 readline-common all 8.2-4 [69.3 kB] Get:11 http://localhost:3142/debian sid/main amd64 libreadline8t64 amd64 8.2-4 [167 kB] Get:12 http://localhost:3142/debian sid/main amd64 libsqlite3-0 amd64 3.45.3-1 [896 kB] Get:13 http://localhost:3142/debian sid/main amd64 libpython3.11-stdlib amd64 3.11.9-1 [1792 kB] Get:14 http://localhost:3142/debian sid/main amd64 python3.11 amd64 3.11.9-1 [602 kB] Get:15 http://localhost:3142/debian sid/main amd64 libpython3-stdlib amd64 3.11.8-1 [9332 B] Get:16 http://localhost:3142/debian sid/main amd64 python3 amd64 3.11.8-1 [27.4 kB] Get:17 http://localhost:3142/debian sid/main amd64 sgml-base all 1.31 [15.4 kB] Get:18 http://localhost:3142/debian sid/main amd64 libproc2-0 amd64 2:4.0.4-4 [64.6 kB] Get:19 http://localhost:3142/debian sid/main amd64 procps amd64 2:4.0.4-4 [880 kB] Get:20 http://localhost:3142/debian sid/main amd64 sensible-utils all 0.0.22 [22.4 kB] Get:21 http://localhost:3142/debian sid/main amd64 libmagic-mgc amd64 1:5.45-3 [314 kB] Get:22 http://localhost:3142/debian sid/main amd64 libmagic1t64 amd64 1:5.45-3 [105 kB] Get:23 http://localhost:3142/debian sid/main amd64 file amd64 1:5.45-3 [42.9 kB] Get:24 http://localhost:3142/debian sid/main amd64 gettext-base amd64 0.21-14+b1 [161 kB] Get:25 http://localhost:3142/debian sid/main amd64 libuchardet0 amd64 0.0.8-1+b1 [68.8 kB] Get:26 http://localhost:3142/debian sid/main amd64 groff-base amd64 1.23.0-4 [1180 kB] Get:27 http://localhost:3142/debian sid/main amd64 bsdextrautils amd64 2.40.1-4 [95.7 kB] Get:28 http://localhost:3142/debian sid/main amd64 libpipeline1 amd64 1.5.7-2 [38.0 kB] Get:29 http://localhost:3142/debian sid/main amd64 man-db amd64 2.12.1-1 [1411 kB] Get:30 http://localhost:3142/debian sid/main amd64 ucf all 3.0043+nmu1 [55.2 kB] Get:31 http://localhost:3142/debian sid/main amd64 m4 amd64 1.4.19-4 [287 kB] Get:32 http://localhost:3142/debian sid/main amd64 autoconf all 2.71-3 [332 kB] Get:33 http://localhost:3142/debian sid/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get:34 http://localhost:3142/debian sid/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get:35 http://localhost:3142/debian sid/main amd64 autopoint all 0.21-14 [496 kB] Get:36 http://localhost:3142/debian sid/main amd64 binutils-aarch64-linux-gnu amd64 2.42-4 [3371 kB] Get:37 http://localhost:3142/debian sid/main amd64 libicu72 amd64 72.1-4+b1 [9395 kB] Get:38 http://localhost:3142/debian sid/main amd64 libxml2 amd64 2.12.7+dfsg-2 [670 kB] Get:39 http://localhost:3142/debian sid/main amd64 libarchive13t64 amd64 3.7.2-2 [346 kB] Get:40 http://localhost:3142/debian sid/main amd64 libbrotli1 amd64 1.1.0-2+b3 [305 kB] Get:41 http://localhost:3142/debian sid/main amd64 libkrb5support0 amd64 1.20.1-6+b1 [33.3 kB] Get:42 http://localhost:3142/debian sid/main amd64 libcom-err2 amd64 1.47.1-1 [22.9 kB] Get:43 http://localhost:3142/debian sid/main amd64 libk5crypto3 amd64 1.20.1-6+b1 [79.8 kB] Get:44 http://localhost:3142/debian sid/main amd64 libkeyutils1 amd64 1.6.3-3 [8952 B] Get:45 http://localhost:3142/debian sid/main amd64 libkrb5-3 amd64 1.20.1-6+b1 [333 kB] Get:46 http://localhost:3142/debian sid/main amd64 libgssapi-krb5-2 amd64 1.20.1-6+b1 [135 kB] Get:47 http://localhost:3142/debian sid/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-6 [19.5 kB] Get:48 http://localhost:3142/debian sid/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-6 [56.9 kB] Get:49 http://localhost:3142/debian sid/main amd64 libldap-2.5-0 amd64 2.5.17+dfsg-1 [186 kB] Get:50 http://localhost:3142/debian sid/main amd64 libnghttp2-14 amd64 1.61.0-1+b1 [75.6 kB] Get:51 http://localhost:3142/debian sid/main amd64 libpsl5t64 amd64 0.21.2-1.1 [56.8 kB] Get:52 http://localhost:3142/debian sid/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b4 [58.5 kB] Get:53 http://localhost:3142/debian sid/main amd64 libssh2-1t64 amd64 1.11.0-5 [215 kB] Get:54 http://localhost:3142/debian sid/main amd64 libcurl4t64 amd64 8.8.0-1 [441 kB] Get:55 http://localhost:3142/debian sid/main amd64 libjsoncpp25 amd64 1.9.5-6+b2 [81.9 kB] Get:56 http://localhost:3142/debian sid/main amd64 librhash0 amd64 1.4.3-3+b1 [132 kB] Get:57 http://localhost:3142/debian sid/main amd64 libuv1t64 amd64 1.48.0-4 [148 kB] Get:58 http://localhost:3142/debian sid/main amd64 cmake-data all 3.29.3-1 [2167 kB] Get:59 http://localhost:3142/debian sid/main amd64 cmake amd64 3.29.3-1+b1 [10.7 MB] Get:60 http://localhost:3142/debian sid/main amd64 gcc-13-aarch64-linux-gnu-base amd64 13.2.0-12cross1 [42.7 kB] Get:61 http://localhost:3142/debian sid/main amd64 cpp-13-aarch64-linux-gnu amd64 13.2.0-12cross1 [9774 kB] Get:62 http://localhost:3142/debian sid/main amd64 cpp-aarch64-linux-gnu amd64 4:13.2.0-7 [4724 B] Get:63 http://localhost:3142/debian sid/main amd64 cross-config all 2.6.20 [16.3 kB] Get:64 http://localhost:3142/debian sid/main amd64 gcc-13-cross-base all 13.2.0-12cross1 [38.1 kB] Get:65 http://localhost:3142/debian sid/main amd64 gcc-14-cross-base all 14-20240127-1cross1 [37.9 kB] Get:66 http://localhost:3142/debian sid/main amd64 libc6-arm64-cross all 2.38-11cross1 [1024 kB] Get:67 http://localhost:3142/debian sid/main amd64 libgcc-s1-arm64-cross all 14-20240127-1cross1 [43.7 kB] Get:68 http://localhost:3142/debian sid/main amd64 libgomp1-arm64-cross all 14-20240127-1cross1 [116 kB] Get:69 http://localhost:3142/debian sid/main amd64 libitm1-arm64-cross all 14-20240127-1cross1 [23.1 kB] Get:70 http://localhost:3142/debian sid/main amd64 libatomic1-arm64-cross all 14-20240127-1cross1 [9360 B] Get:71 http://localhost:3142/debian sid/main amd64 libasan8-arm64-cross all 14-20240127-1cross1 [2561 kB] Get:72 http://localhost:3142/debian sid/main amd64 liblsan0-arm64-cross all 14-20240127-1cross1 [1155 kB] Get:73 http://localhost:3142/debian sid/main amd64 libtsan2-arm64-cross all 14-20240127-1cross1 [2367 kB] Get:74 http://localhost:3142/debian sid/main amd64 libstdc++6-arm64-cross all 14-20240127-1cross1 [588 kB] Get:75 http://localhost:3142/debian sid/main amd64 libubsan1-arm64-cross all 14-20240127-1cross1 [1034 kB] Get:76 http://localhost:3142/debian sid/main amd64 libhwasan0-arm64-cross all 14-20240127-1cross1 [1386 kB] Get:77 http://localhost:3142/debian sid/main amd64 libgcc-13-dev-arm64-cross all 13.2.0-12cross1 [2231 kB] Get:78 http://localhost:3142/debian sid/main amd64 gcc-13-aarch64-linux-gnu amd64 13.2.0-12cross1 [18.8 MB] Get:79 http://localhost:3142/debian sid/main amd64 gcc-aarch64-linux-gnu amd64 4:13.2.0-7 [1444 B] Get:80 http://localhost:3142/debian sid/main amd64 libc6-dev-arm64-cross all 2.38-11cross1 [1447 kB] Get:81 http://localhost:3142/debian sid/main amd64 libstdc++-13-dev-arm64-cross all 13.2.0-12cross1 [2142 kB] Get:82 http://localhost:3142/debian sid/main amd64 g++-13-aarch64-linux-gnu amd64 13.2.0-12cross1 [10.7 MB] Get:83 http://localhost:3142/debian sid/main amd64 g++-aarch64-linux-gnu amd64 4:13.2.0-7 [1200 B] Get:84 http://localhost:3142/debian sid/main amd64 libconfig-inifiles-perl all 3.000003-2 [45.9 kB] Get:85 http://localhost:3142/debian sid/main amd64 libio-string-perl all 1.08-4 [12.1 kB] Get:86 http://localhost:3142/debian sid/main amd64 libxml-namespacesupport-perl all 1.12-2 [15.1 kB] Get:87 http://localhost:3142/debian sid/main amd64 libxml-sax-base-perl all 1.09-3 [20.6 kB] Get:88 http://localhost:3142/debian sid/main amd64 libxml-sax-perl all 1.02+dfsg-3 [59.4 kB] Get:89 http://localhost:3142/debian sid/main amd64 libxml-libxml-perl amd64 2.0207+dfsg+really+2.0134-2 [313 kB] Get:90 http://localhost:3142/debian sid/main amd64 libxml-simple-perl all 2.25-2 [69.8 kB] Get:91 http://localhost:3142/debian sid/main amd64 libyaml-perl all 1.31-1 [64.8 kB] Get:92 http://localhost:3142/debian sid/main amd64 libconfig-auto-perl all 0.44-2 [19.2 kB] Get:93 http://localhost:3142/debian sid/main amd64 libfile-which-perl all 1.27-2 [15.1 kB] Get:94 http://localhost:3142/debian sid/main amd64 libfile-homedir-perl all 1.006-2 [42.4 kB] Get:95 http://localhost:3142/debian sid/main amd64 libdebian-dpkgcross-perl all 2.6.20 [15.3 kB] Get:96 http://localhost:3142/debian sid/main amd64 dpkg-cross all 2.6.20 [25.8 kB] Get:97 http://localhost:3142/debian sid/main amd64 crossbuild-essential-arm64 all 12.10 [3484 B] Get:98 http://localhost:3142/debian sid/main amd64 libdebhelper-perl all 13.15.3 [88.0 kB] Get:99 http://localhost:3142/debian sid/main amd64 libtool all 2.4.7-7 [517 kB] Get:100 http://localhost:3142/debian sid/main amd64 dh-autoreconf all 20 [17.1 kB] Get:101 http://localhost:3142/debian sid/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:102 http://localhost:3142/debian sid/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get:103 http://localhost:3142/debian sid/main amd64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get:104 http://localhost:3142/debian sid/main amd64 libelf1t64 amd64 0.191-1+b1 [189 kB] Get:105 http://localhost:3142/debian sid/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get:106 http://localhost:3142/debian sid/main amd64 gettext amd64 0.21-14+b1 [1301 kB] Get:107 http://localhost:3142/debian sid/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get:108 http://localhost:3142/debian sid/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get:109 http://localhost:3142/debian sid/main amd64 debhelper all 13.15.3 [901 kB] Get:110 http://localhost:3142/debian sid/main amd64 dh-exec amd64 0.30 [25.6 kB] Get:111 http://localhost:3142/debian sid/main amd64 xml-core all 0.19 [20.1 kB] Get:112 http://localhost:3142/debian sid/main amd64 docutils-common all 0.20.1+dfsg-3 [128 kB] Get:113 http://localhost:3142/debian sid/main amd64 libfakeroot amd64 1.34-1 [28.9 kB] Get:114 http://localhost:3142/debian sid/main amd64 fakeroot amd64 1.34-1 [74.0 kB] Get:115 http://localhost:3142/debian sid/main arm64 gcc-13-base arm64 13.2.0-25 [45.8 kB] Get:116 http://localhost:3142/debian sid/main arm64 gcc-14-base arm64 14.1.0-1 [44.3 kB] Get:117 http://localhost:3142/debian sid/main arm64 hdf5-helpers arm64 1.10.10+repack-3.3 [23.4 kB] Get:118 http://localhost:3142/debian sid/main amd64 icu-devtools amd64 72.1-4+b1 [208 kB] Get:119 http://localhost:3142/debian sid/main arm64 libgcc-s1 arm64 14.1.0-1 [53.8 kB] Get:120 http://localhost:3142/debian sid/main arm64 libc6 arm64 2.38-11 [2334 kB] Get:121 http://localhost:3142/debian sid/main arm64 libaec0 arm64 1.1.3-1 [22.1 kB] Get:122 http://localhost:3142/debian sid/main arm64 libsz2 arm64 1.1.3-1 [7664 B] Get:123 http://localhost:3142/debian sid/main arm64 libaec-dev arm64 1.1.3-1 [19.7 kB] Get:124 http://localhost:3142/debian sid/main arm64 libasan8 arm64 14.1.0-1 [2573 kB] Get:125 http://localhost:3142/debian sid/main arm64 libatomic1 arm64 14.1.0-1 [9940 B] Get:126 http://localhost:3142/debian sid/main arm64 libgomp1 arm64 14.1.0-1 [123 kB] Get:127 http://localhost:3142/debian sid/main arm64 libitm1 arm64 14.1.0-1 [23.8 kB] Get:128 http://localhost:3142/debian sid/main arm64 liblsan0 arm64 14.1.0-1 [1160 kB] Get:129 http://localhost:3142/debian sid/main arm64 libtsan2 arm64 14.1.0-1 [2380 kB] Get:130 http://localhost:3142/debian sid/main arm64 libstdc++6 arm64 14.1.0-1 [635 kB] Get:131 http://localhost:3142/debian sid/main arm64 libubsan1 arm64 14.1.0-1 [1038 kB] Get:132 http://localhost:3142/debian sid/main arm64 libhwasan0 arm64 14.1.0-1 [1441 kB] Get:133 http://localhost:3142/debian sid/main arm64 libgcc-13-dev arm64 13.2.0-25 [2240 kB] Get:134 http://localhost:3142/debian sid/main arm64 libcrypt1 arm64 1:4.4.36-4 [90.5 kB] Get:135 http://localhost:3142/debian sid/main arm64 libcrypt-dev arm64 1:4.4.36-4 [121 kB] Get:136 http://localhost:3142/debian sid/main arm64 libc6-dev arm64 2.38-11 [1451 kB] Get:137 http://localhost:3142/debian sid/main arm64 libstdc++-13-dev arm64 13.2.0-25 [2227 kB] Get:138 http://localhost:3142/debian sid/main arm64 libboost1.83-dev arm64 1.83.0-3 [10.6 MB] Get:139 http://localhost:3142/debian sid/main arm64 libboost-atomic1.83.0 arm64 1.83.0-3 [233 kB] Get:140 http://localhost:3142/debian sid/main arm64 libboost-atomic1.83-dev arm64 1.83.0-3 [234 kB] Get:141 http://localhost:3142/debian sid/main arm64 libboost-chrono1.83.0t64 arm64 1.83.0-3 [239 kB] Get:142 http://localhost:3142/debian sid/main arm64 libboost-chrono1.83-dev arm64 1.83.0-3 [244 kB] Get:143 http://localhost:3142/debian sid/main arm64 libboost-chrono-dev arm64 1.83.0.2+b2 [4212 B] Get:144 http://localhost:3142/debian sid/main arm64 libboost-date-time1.83.0 arm64 1.83.0-3 [230 kB] Get:145 http://localhost:3142/debian sid/main arm64 libboost-serialization1.83.0 arm64 1.83.0-3 [324 kB] Get:146 http://localhost:3142/debian sid/main arm64 libboost-serialization1.83-dev arm64 1.83.0-3 [372 kB] Get:147 http://localhost:3142/debian sid/main arm64 libboost-date-time1.83-dev arm64 1.83.0-3 [239 kB] Get:148 http://localhost:3142/debian sid/main arm64 libboost-dev arm64 1.83.0.2+b2 [3828 B] Get:149 http://localhost:3142/debian sid/main arm64 libboost-filesystem1.83.0 arm64 1.83.0-3 [273 kB] Get:150 http://localhost:3142/debian sid/main arm64 libboost-system1.83.0 arm64 1.83.0-3 [230 kB] Get:151 http://localhost:3142/debian sid/main arm64 libboost-system1.83-dev arm64 1.83.0-3 [231 kB] Get:152 http://localhost:3142/debian sid/main arm64 libboost-filesystem1.83-dev arm64 1.83.0-3 [291 kB] Get:153 http://localhost:3142/debian sid/main arm64 libboost-filesystem-dev arm64 1.83.0.2+b2 [3616 B] Get:154 http://localhost:3142/debian sid/main arm64 libboost-regex1.83.0 arm64 1.83.0-3 [311 kB] Get:155 http://localhost:3142/debian sid/main arm64 libicu72 arm64 72.1-4+b1 [9224 kB] Get:156 http://localhost:3142/debian sid/main arm64 libicu-dev arm64 72.1-4+b1 [10.2 MB] Get:157 http://localhost:3142/debian sid/main arm64 libboost-regex1.83-dev arm64 1.83.0-3 [333 kB] Get:158 http://localhost:3142/debian sid/main arm64 libbz2-1.0 arm64 1.0.8-5.1 [37.9 kB] Get:159 http://localhost:3142/debian sid/main arm64 liblzma5 arm64 5.6.1+really5.4.5-1 [233 kB] Get:160 http://localhost:3142/debian sid/main arm64 libzstd1 arm64 1.5.5+dfsg2-2 [256 kB] Get:161 http://localhost:3142/debian sid/main arm64 zlib1g arm64 1:1.3.dfsg+really1.3.1-1 [84.0 kB] Get:162 http://localhost:3142/debian sid/main arm64 libboost-iostreams1.83.0 arm64 1.83.0-3 [251 kB] Get:163 http://localhost:3142/debian sid/main arm64 libboost-iostreams1.83-dev arm64 1.83.0-3 [260 kB] Get:164 http://localhost:3142/debian sid/main arm64 libboost-iostreams-dev arm64 1.83.0.2+b2 [3568 B] Get:165 http://localhost:3142/debian sid/main arm64 libboost-thread1.83.0 arm64 1.83.0-3 [265 kB] Get:166 http://localhost:3142/debian sid/main arm64 libboost-thread1.83-dev arm64 1.83.0-3 [276 kB] Get:167 http://localhost:3142/debian sid/main arm64 libboost-thread-dev arm64 1.83.0.2+b2 [3616 B] Get:168 http://localhost:3142/debian sid/main arm64 libbrotli1 arm64 1.1.0-2+b3 [295 kB] Get:169 http://localhost:3142/debian sid/main arm64 libcom-err2 arm64 1.47.1-1 [22.8 kB] Get:170 http://localhost:3142/debian sid/main arm64 libkrb5support0 arm64 1.20.1-6+b1 [33.0 kB] Get:171 http://localhost:3142/debian sid/main arm64 libk5crypto3 arm64 1.20.1-6+b1 [80.5 kB] Get:172 http://localhost:3142/debian sid/main arm64 libkeyutils1 arm64 1.6.3-3 [9112 B] Get:173 http://localhost:3142/debian sid/main arm64 libssl3t64 arm64 3.2.1-3 [2537 kB] Get:174 http://localhost:3142/debian sid/main arm64 libkrb5-3 arm64 1.20.1-6+b1 [315 kB] Get:175 http://localhost:3142/debian sid/main arm64 libgssapi-krb5-2 arm64 1.20.1-6+b1 [124 kB] Get:176 http://localhost:3142/debian sid/main arm64 libunistring5 arm64 1.2-1 [402 kB] Get:177 http://localhost:3142/debian sid/main arm64 libidn2-0 arm64 2.3.7-2 [127 kB] Get:178 http://localhost:3142/debian sid/main arm64 libgmp10 arm64 2:6.3.0+dfsg-2+b1 [533 kB] Get:179 http://localhost:3142/debian sid/main arm64 libnettle8t64 arm64 3.9.1-2.2 [301 kB] Get:180 http://localhost:3142/debian sid/main arm64 libhogweed6t64 arm64 3.9.1-2.2 [324 kB] Get:181 http://localhost:3142/debian sid/main arm64 libffi8 arm64 3.4.6-1 [20.9 kB] Get:182 http://localhost:3142/debian sid/main arm64 libp11-kit0 arm64 0.25.3-5 [400 kB] Get:183 http://localhost:3142/debian sid/main arm64 libtasn1-6 arm64 4.19.0-3+b2 [46.4 kB] Get:184 http://localhost:3142/debian sid/main arm64 libgnutls30t64 arm64 3.8.5-2 [1345 kB] Get:185 http://localhost:3142/debian sid/main arm64 libdb5.3t64 arm64 5.3.28+dfsg2-7 [625 kB] Get:186 http://localhost:3142/debian sid/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-6 [20.1 kB] Get:187 http://localhost:3142/debian sid/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-6 [55.3 kB] Get:188 http://localhost:3142/debian sid/main arm64 libldap-2.5-0 arm64 2.5.17+dfsg-1 [173 kB] Get:189 http://localhost:3142/debian sid/main arm64 libnghttp2-14 arm64 1.61.0-1+b1 [71.0 kB] Get:190 http://localhost:3142/debian sid/main arm64 libpsl5t64 arm64 0.21.2-1.1 [56.8 kB] Get:191 http://localhost:3142/debian sid/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b4 [56.7 kB] Get:192 http://localhost:3142/debian sid/main arm64 libssh2-1t64 arm64 1.11.0-5 [207 kB] Get:193 http://localhost:3142/debian sid/main arm64 libcurl4t64 arm64 8.8.0-1 [411 kB] Get:194 http://localhost:3142/debian sid/main arm64 libcurl4-openssl-dev arm64 8.8.0-1 [532 kB] Get:195 http://localhost:3142/debian sid/main arm64 libgfortran5 arm64 14.1.0-1 [361 kB] Get:196 http://localhost:3142/debian sid/main arm64 libhdf5-103-1t64 arm64 1.10.10+repack-3.3 [1035 kB] Get:197 http://localhost:3142/debian sid/main arm64 libhdf5-cpp-103-1t64 arm64 1.10.10+repack-3.3 [119 kB] Get:198 http://localhost:3142/debian sid/main arm64 libhdf5-fortran-102t64 arm64 1.10.10+repack-3.3 [88.0 kB] Get:199 http://localhost:3142/debian sid/main arm64 libhdf5-hl-100t64 arm64 1.10.10+repack-3.3 [60.1 kB] Get:200 http://localhost:3142/debian sid/main arm64 libhdf5-hl-fortran-100t64 arm64 1.10.10+repack-3.3 [38.5 kB] Get:201 http://localhost:3142/debian sid/main arm64 libhdf5-hl-cpp-100t64 arm64 1.10.10+repack-3.3 [21.2 kB] Get:202 http://localhost:3142/debian sid/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1 [916 kB] Get:203 http://localhost:3142/debian sid/main arm64 libjpeg62-turbo arm64 1:2.1.5-3 [172 kB] Get:204 http://localhost:3142/debian sid/main arm64 libjpeg62-turbo-dev arm64 1:2.1.5-3 [292 kB] Get:205 http://localhost:3142/debian sid/main arm64 libjpeg-dev arm64 1:2.1.5-3 [71.9 kB] Get:206 http://localhost:3142/debian sid/main arm64 libssl-dev arm64 3.2.1-3 [3089 kB] Get:207 http://localhost:3142/debian sid/main arm64 libhdf5-dev arm64 1.10.10+repack-3.3 [2689 kB] Get:208 http://localhost:3142/debian sid/main amd64 python3-roman all 3.3-3 [9880 B] Get:209 http://localhost:3142/debian sid/main amd64 python3-docutils all 0.20.1+dfsg-3 [389 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 174 MB in 1s (187 MB/s) Selecting previously unselected package liblocale-gettext-perl. (Reading database ... 12876 files and directories currently installed.) Preparing to unpack .../liblocale-gettext-perl_1.07-7_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-7) ... Selecting previously unselected package libpython3.11-minimal:amd64. Preparing to unpack .../libpython3.11-minimal_3.11.9-1_amd64.deb ... Unpacking libpython3.11-minimal:amd64 (3.11.9-1) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.6.2-1_amd64.deb ... Unpacking libexpat1:amd64 (2.6.2-1) ... Selecting previously unselected package python3.11-minimal. Preparing to unpack .../python3.11-minimal_3.11.9-1_amd64.deb ... Unpacking python3.11-minimal (3.11.9-1) ... Setting up libpython3.11-minimal:amd64 (3.11.9-1) ... Setting up libexpat1:amd64 (2.6.2-1) ... Setting up python3.11-minimal (3.11.9-1) ... Selecting previously unselected package python3-minimal. (Reading database ... 13206 files and directories currently installed.) 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Setting up icu-devtools (72.1-4+b1) ... Setting up libitm1-arm64-cross (14-20240127-1cross1) ... Setting up libncursesw6:amd64 (6.5-2) ... Setting up libk5crypto3:amd64 (1.20.1-6+b1) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg1-6) ... Setting up autoconf (2.71-3) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.22) ... Setting up librhash0:amd64 (1.4.3-3+b1) ... Setting up libuchardet0:amd64 (0.0.8-1+b1) ... Setting up procps (2:4.0.4-4) ... Setting up gcc-13-aarch64-linux-gnu-base:amd64 (13.2.0-12cross1) ... Setting up netbase (6.4) ... Setting up sgml-base (1.31) ... Setting up cmake-data (3.29.3-1) ... Setting up libkrb5-3:amd64 (1.20.1-6+b1) ... Setting up libssh2-1t64:amd64 (1.11.0-5) ... Setting up libfile-homedir-perl (1.006-2) ... Setting up readline-common (8.2-4) ... Setting up libxml2:amd64 (2.12.7+dfsg-2) ... Setting up liblocale-gettext-perl (1.07-7) ... Setting up libgcc-s1-arm64-cross (14-20240127-1cross1) ... Setting up libatomic1-arm64-cross (14-20240127-1cross1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up liblsan0-arm64-cross (14-20240127-1cross1) ... Setting up libgomp1-arm64-cross (14-20240127-1cross1) ... Setting up gettext (0.21-14+b1) ... Setting up cpp-13-aarch64-linux-gnu (13.2.0-12cross1) ... Setting up libtool (2.4.7-7) ... Setting up libhwasan0-arm64-cross (14-20240127-1cross1) ... Setting up libc6-dev-arm64-cross (2.38-11cross1) ... Setting up libldap-2.5-0:amd64 (2.5.17+dfsg-1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up libstdc++6-arm64-cross (14-20240127-1cross1) ... Setting up dh-autoreconf (20) ... Setting up cpp-aarch64-linux-gnu (4:13.2.0-7) ... Setting up libgssapi-krb5-2:amd64 (1.20.1-6+b1) ... Setting up ucf (3.0043+nmu1) ... Setting up libreadline8t64:amd64 (8.2-4) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-4) ... Setting up xml-core (0.19) ... Setting up libasan8-arm64-cross (14-20240127-1cross1) ... Setting up libarchive13t64:amd64 (3.7.2-2) ... Setting up libtsan2-arm64-cross (14-20240127-1cross1) ... Setting up libubsan1-arm64-cross (14-20240127-1cross1) ... Setting up libcurl4t64:amd64 (8.8.0-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpython3.11-stdlib:amd64 (3.11.9-1) ... Setting up man-db (2.12.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libxml-sax-perl (1.02+dfsg-3) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libgcc-13-dev-arm64-cross (13.2.0-12cross1) ... Setting up libxml-libxml-perl (2.0207+dfsg+really+2.0134-2) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up cmake (3.29.3-1+b1) ... Setting up libpython3-stdlib:amd64 (3.11.8-1) ... Setting up python3.11 (3.11.9-1) ... Setting up debhelper (13.15.3) ... Setting up python3 (3.11.8-1) ... Setting up dh-exec (0.30) ... Setting up gcc-13-aarch64-linux-gnu (13.2.0-12cross1) ... Setting up libstdc++-13-dev-arm64-cross (13.2.0-12cross1) ... Setting up python3-roman (3.3-3) ... Setting up libxml-simple-perl (2.25-2) ... Setting up g++-13-aarch64-linux-gnu (13.2.0-12cross1) ... Setting up gcc-aarch64-linux-gnu (4:13.2.0-7) ... Setting up libconfig-auto-perl (0.44-2) ... Setting up g++-aarch64-linux-gnu (4:13.2.0-7) ... Setting up libdebian-dpkgcross-perl (2.6.20) ... Setting up dpkg-cross (2.6.20) ... Setting up crossbuild-essential-arm64 (12.10) ... Setting up libgcc-s1:arm64 (14.1.0-1) ... Setting up libc6:arm64 (2.38-11) ... Setting up libdb5.3t64:arm64 (5.3.28+dfsg2-7) ... Setting up libffi8:arm64 (3.4.6-1) ... Setting up libhwasan0:arm64 (14.1.0-1) ... Setting up libasan8:arm64 (14.1.0-1) ... Setting up libtasn1-6:arm64 (4.19.0-3+b2) ... Setting up libtsan2:arm64 (14.1.0-1) ... Setting up libbz2-1.0:arm64 (1.0.8-5.1) ... Setting up libstdc++6:arm64 (14.1.0-1) ... Setting up liblsan0:arm64 (14.1.0-1) ... Setting up libitm1:arm64 (14.1.0-1) ... Setting up libzstd1:arm64 (1.5.5+dfsg2-2) ... Setting up libkeyutils1:arm64 (1.6.3-3) ... Setting up libicu72:arm64 (72.1-4+b1) ... Setting up liblzma5:arm64 (5.6.1+really5.4.5-1) ... Setting up libboost-regex1.83.0:arm64 (1.83.0-3) ... Setting up libbrotli1:arm64 (1.1.0-2+b3) ... Setting up libnghttp2-14:arm64 (1.61.0-1+b1) ... Setting up libboost-thread1.83.0:arm64 (1.83.0-3) ... Setting up zlib1g:arm64 (1:1.3.dfsg+really1.3.1-1) ... Setting up libcrypt1:arm64 (1:4.4.36-4) ... Setting up libcom-err2:arm64 (1.47.1-1) ... Setting up libboost-filesystem1.83.0:arm64 (1.83.0-3) ... Setting up libgomp1:arm64 (14.1.0-1) ... Setting up libaec0:arm64 (1.1.3-1) ... Setting up libkrb5support0:arm64 (1.20.1-6+b1) ... Setting up libsasl2-modules-db:arm64 (2.1.28+dfsg1-6) ... Setting up libboost-atomic1.83.0:arm64 (1.83.0-3) ... Setting up libboost-serialization1.83.0:arm64 (1.83.0-3) ... Setting up libnettle8t64:arm64 (3.9.1-2.2) ... Setting up libjpeg62-turbo:arm64 (1:2.1.5-3) ... Setting up libboost-chrono1.83.0t64:arm64 (1.83.0-3) ... Setting up libboost-iostreams1.83.0:arm64 (1.83.0-3) ... Setting up libgmp10:arm64 (2:6.3.0+dfsg-2+b1) ... Setting up libp11-kit0:arm64 (0.25.3-5) ... Setting up libunistring5:arm64 (1.2-1) ... Setting up libatomic1:arm64 (14.1.0-1) ... Setting up libk5crypto3:arm64 (1.20.1-6+b1) ... Setting up libgfortran5:arm64 (14.1.0-1) ... Setting up libubsan1:arm64 (14.1.0-1) ... Setting up libhogweed6t64:arm64 (3.9.1-2.2) ... Setting up libgcc-13-dev:arm64 (13.2.0-25) ... Setting up libcrypt-dev:arm64 (1:4.4.36-4) ... Setting up libc6-dev:arm64 (2.38-11) ... Setting up libicu-dev:arm64 (72.1-4+b1) ... Setting up libsz2:arm64 (1.1.3-1) ... Setting up libstdc++-13-dev:arm64 (13.2.0-25) ... Setting up libboost1.83-dev:arm64 (1.83.0-3) ... Setting up libboost-chrono1.83-dev:arm64 (1.83.0-3) ... Setting up libboost-chrono-dev:arm64 (1.83.0.2+b2) ... Setting up libssl3t64:arm64 (3.2.1-3) ... Setting up libaec-dev:arm64 (1.1.3-1) ... Setting up libboost-serialization1.83-dev:arm64 (1.83.0-3) ... Setting up libidn2-0:arm64 (2.3.7-2) ... Setting up libjpeg62-turbo-dev:arm64 (1:2.1.5-3) ... Setting up libboost-date-time1.83-dev:arm64 (1.83.0-3) ... Setting up libssl-dev:arm64 (3.2.1-3) ... Setting up libboost-regex1.83-dev:arm64 (1.83.0-3) ... Setting up libsasl2-2:arm64 (2.1.28+dfsg1-6) ... Setting up libboost-atomic1.83-dev:arm64 (1.83.0-3) ... Setting up zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1) ... Setting up libkrb5-3:arm64 (1.20.1-6+b1) ... Setting up libboost-dev:arm64 (1.83.0.2+b2) ... Setting up libboost-system1.83-dev:arm64 (1.83.0-3) ... Setting up libssh2-1t64:arm64 (1.11.0-5) ... Setting up libgnutls30t64:arm64 (3.8.5-2) ... Setting up libboost-thread1.83-dev:arm64 (1.83.0-3) ... Setting up libboost-iostreams1.83-dev:arm64 (1.83.0-3) ... Setting up libpsl5t64:arm64 (0.21.2-1.1) ... Setting up libjpeg-dev:arm64 (1:2.1.5-3) ... Setting up libboost-filesystem1.83-dev:arm64 (1.83.0-3) ... Setting up libboost-iostreams-dev:arm64 (1.83.0.2+b2) ... Setting up libldap-2.5-0:arm64 (2.5.17+dfsg-1) ... Setting up librtmp1:arm64 (2.4+20151223.gitfa8646d.1-2+b4) ... Setting up libgssapi-krb5-2:arm64 (1.20.1-6+b1) ... Setting up libboost-filesystem-dev:arm64 (1.83.0.2+b2) ... Setting up libboost-thread-dev:arm64 (1.83.0.2+b2) ... Setting up libcurl4t64:arm64 (8.8.0-1) ... Setting up libcurl4-openssl-dev:arm64 (8.8.0-1) ... Setting up libhdf5-103-1t64:arm64 (1.10.10+repack-3.3) ... Setting up libhdf5-hl-100t64:arm64 (1.10.10+repack-3.3) ... Setting up libhdf5-cpp-103-1t64:arm64 (1.10.10+repack-3.3) ... Setting up libhdf5-fortran-102t64:arm64 (1.10.10+repack-3.3) ... Setting up libhdf5-hl-cpp-100t64:arm64 (1.10.10+repack-3.3) ... Setting up libhdf5-hl-fortran-100t64:arm64 (1.10.10+repack-3.3) ... Setting up libhdf5-dev:arm64 (1.10.10+repack-3.3) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/pkgconfig/hdf5-serial.pc to provide /usr/lib/aarch64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode Processing triggers for libc-bin (2.38-11) ... Processing triggers for sgml-base (1.31) ... Setting up docutils-common (0.20.1+dfsg-3) ... Processing triggers for sgml-base (1.31) ... Setting up python3-docutils (0.20.1+dfsg-3) ... Setting up sbuild-build-depends-main-dummy:arm64 (0.invalid.0) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (arm64 included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 6.1.0-20-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.85-1 (2024-04-11) amd64 (x86_64) Toolchain package versions: binutils_2.42-4 dpkg-dev_1.22.6 g++-13_13.2.0-25 gcc-13_13.2.0-25 libc6-dev_2.38-11 libstdc++-13-dev_13.2.0-25 libstdc++-13-dev-arm64-cross_13.2.0-12cross1 libstdc++6_14.1.0-1 libstdc++6-arm64-cross_14-20240127-1cross1 linux-libc-dev_6.8.11-1 Package versions: adduser_3.137 apt_2.9.4 autoconf_2.71-3 automake_1:1.16.5-1.3 autopoint_0.21-14 autotools-dev_20220109.1 base-files_13.2 base-passwd_3.6.3 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gcc-13_13.2.0-25 gcc-13-aarch64-linux-gnu_13.2.0-12cross1 gcc-13-aarch64-linux-gnu-base_13.2.0-12cross1 gcc-13-base_13.2.0-25 gcc-13-cross-base_13.2.0-12cross1 gcc-13-x86-64-linux-gnu_13.2.0-25 gcc-14-base_14.1.0-1 gcc-14-cross-base_14-20240127-1cross1 gcc-aarch64-linux-gnu_4:13.2.0-7 gcc-x86-64-linux-gnu_4:13.2.0-7 gettext_0.21-14+b1 gettext-base_0.21-14+b1 gpgv_2.2.43-6 grep_3.11-4 groff-base_1.23.0-4 gzip_1.12-1.1 hdf5-helpers_1.10.10+repack-3.3 hostname_3.23+nmu2 icu-devtools_72.1-4+b1 init-system-helpers_1.66 intltool-debian_0.35.0+20060710.6 libacl1_2.3.2-2 libaec-dev_1.1.3-1 libaec0_1.1.3-1 libapt-pkg6.0t64_2.9.4 libarchive-zip-perl_1.68-1 libarchive13t64_3.7.2-2 libasan8_14.1.0-1 libasan8-arm64-cross_14-20240127-1cross1 libatomic1_14.1.0-1 libatomic1-arm64-cross_14-20240127-1cross1 libattr1_1:2.5.2-1 libaudit-common_1:3.1.2-2.1 libaudit1_1:3.1.2-2.1 libbinutils_2.42-4 libblkid1_2.40.1-4 libboost-atomic1.83-dev_1.83.0-3 libboost-atomic1.83.0_1.83.0-3 libboost-chrono-dev_1.83.0.2+b2 libboost-chrono1.83-dev_1.83.0-3 libboost-chrono1.83.0t64_1.83.0-3 libboost-date-time1.83-dev_1.83.0-3 libboost-date-time1.83.0_1.83.0-3 libboost-dev_1.83.0.2+b2 libboost-filesystem-dev_1.83.0.2+b2 libboost-filesystem1.83-dev_1.83.0-3 libboost-filesystem1.83.0_1.83.0-3 libboost-iostreams-dev_1.83.0.2+b2 libboost-iostreams1.83-dev_1.83.0-3 libboost-iostreams1.83.0_1.83.0-3 libboost-regex1.83-dev_1.83.0-3 libboost-regex1.83.0_1.83.0-3 libboost-serialization1.83-dev_1.83.0-3 libboost-serialization1.83.0_1.83.0-3 libboost-system1.83-dev_1.83.0-3 libboost-system1.83.0_1.83.0-3 libboost-thread-dev_1.83.0.2+b2 libboost-thread1.83-dev_1.83.0-3 libboost-thread1.83.0_1.83.0-3 libboost1.83-dev_1.83.0-3 libbrotli1_1.1.0-2+b3 libbz2-1.0_1.0.8-5.1 libc-bin_2.38-11 libc-dev-bin_2.38-11 libc6_2.38-11 libc6-arm64-cross_2.38-11cross1 libc6-dev_2.38-11 libc6-dev-arm64-cross_2.38-11cross1 libcap-ng0_0.8.5-1 libcap2_1:2.66-5 libcc1-0_14.1.0-1 libcom-err2_1.47.1-1 libconfig-auto-perl_0.44-2 libconfig-inifiles-perl_3.000003-2 libcrypt-dev_1:4.4.36-4 libcrypt1_1:4.4.36-4 libctf-nobfd0_2.42-4 libctf0_2.42-4 libcurl4-openssl-dev_8.8.0-1 libcurl4t64_8.8.0-1 libdb5.3t64_5.3.28+dfsg2-7 libdebconfclient0_0.272 libdebhelper-perl_13.15.3 libdebian-dpkgcross-perl_2.6.20 libdpkg-perl_1.22.6 libelf1t64_0.191-1+b1 libexpat1_2.6.2-1 libfakeroot_1.34-1 libffi8_3.4.6-1 libfile-homedir-perl_1.006-2 libfile-stripnondeterminism-perl_1.14.0-1 libfile-which-perl_1.27-2 libgcc-13-dev_13.2.0-25 libgcc-13-dev-arm64-cross_13.2.0-12cross1 libgcc-s1_14.1.0-1 libgcc-s1-arm64-cross_14-20240127-1cross1 libgcrypt20_1.10.3-3 libgdbm-compat4t64_1.23-5.1+b1 libgdbm6t64_1.23-5.1+b1 libgfortran5_14.1.0-1 libgmp10_2:6.3.0+dfsg-2+b1 libgnutls30t64_3.8.5-2 libgomp1_14.1.0-1 libgomp1-arm64-cross_14-20240127-1cross1 libgpg-error0_1.49-2 libgprofng0_2.42-4 libgssapi-krb5-2_1.20.1-6+b1 libhdf5-103-1t64_1.10.10+repack-3.3 libhdf5-cpp-103-1t64_1.10.10+repack-3.3 libhdf5-dev_1.10.10+repack-3.3 libhdf5-fortran-102t64_1.10.10+repack-3.3 libhdf5-hl-100t64_1.10.10+repack-3.3 libhdf5-hl-cpp-100t64_1.10.10+repack-3.3 libhdf5-hl-fortran-100t64_1.10.10+repack-3.3 libhogweed6t64_3.9.1-2.2 libhwasan0_14.1.0-1 libhwasan0-arm64-cross_14-20240127-1cross1 libicu-dev_72.1-4+b1 libicu72_72.1-4+b1 libidn2-0_2.3.7-2 libio-string-perl_1.08-4 libisl23_0.26-3+b2 libitm1_14.1.0-1 libitm1-arm64-cross_14-20240127-1cross1 libjansson4_2.14-2+b2 libjpeg-dev_1:2.1.5-3 libjpeg62-turbo_1:2.1.5-3 libjpeg62-turbo-dev_1:2.1.5-3 libjsoncpp25_1.9.5-6+b2 libk5crypto3_1.20.1-6+b1 libkeyutils1_1.6.3-3 libkrb5-3_1.20.1-6+b1 libkrb5support0_1.20.1-6+b1 libldap-2.5-0_2.5.17+dfsg-1 liblocale-gettext-perl_1.07-7 liblsan0_14.1.0-1 liblsan0-arm64-cross_14-20240127-1cross1 liblz4-1_1.9.4-2 liblzma5_5.6.1+really5.4.5-1 libmagic-mgc_1:5.45-3 libmagic1t64_1:5.45-3 libmd0_1.1.0-2 libmount1_2.40.1-4 libmpc3_1.3.1-1+b2 libmpfr6_4.2.1-1+b1 libncursesw6_6.5-2 libnettle8t64_3.9.1-2.2 libnghttp2-14_1.61.0-1+b1 libp11-kit0_0.25.3-5 libpam-modules_1.5.3-7 libpam-modules-bin_1.5.3-7 libpam-runtime_1.5.3-7 libpam0g_1.5.3-7 libpcre2-8-0_10.42-4+b1 libperl5.38t64_5.38.2-5 libpipeline1_1.5.7-2 libproc2-0_2:4.0.4-4 libpsl5t64_0.21.2-1.1 libpython3-stdlib_3.11.8-1 libpython3.11-minimal_3.11.9-1 libpython3.11-stdlib_3.11.9-1 libquadmath0_14.1.0-1 libreadline8t64_8.2-4 librhash0_1.4.3-3+b1 librtmp1_2.4+20151223.gitfa8646d.1-2+b4 libsasl2-2_2.1.28+dfsg1-6 libsasl2-modules-db_2.1.28+dfsg1-6 libseccomp2_2.5.5-1 libselinux1_3.5-2+b2 libsemanage-common_3.5-1 libsemanage2_3.5-1+b3 libsepol2_3.5-2+b1 libsframe1_2.42-4 libsmartcols1_2.40.1-4 libsqlite3-0_3.45.3-1 libssh2-1t64_1.11.0-5 libssl-dev_3.2.1-3 libssl3t64_3.2.1-3 libstdc++-13-dev_13.2.0-25 libstdc++-13-dev-arm64-cross_13.2.0-12cross1 libstdc++6_14.1.0-1 libstdc++6-arm64-cross_14-20240127-1cross1 libsystemd0_256~rc3-6 libsz2_1.1.3-1 libtasn1-6_4.19.0-3+b2 libtinfo6_6.5-2 libtool_2.4.7-7 libtsan2_14.1.0-1 libtsan2-arm64-cross_14-20240127-1cross1 libubsan1_14.1.0-1 libubsan1-arm64-cross_14-20240127-1cross1 libuchardet0_0.0.8-1+b1 libudev1_256~rc3-6 libunistring5_1.2-1 libuuid1_2.40.1-4 libuv1t64_1.48.0-4 libxml-libxml-perl_2.0207+dfsg+really+2.0134-2 libxml-namespacesupport-perl_1.12-2 libxml-sax-base-perl_1.09-3 libxml-sax-perl_1.02+dfsg-3 libxml-simple-perl_2.25-2 libxml2_2.12.7+dfsg-2 libxxhash0_0.8.2-2+b1 libyaml-perl_1.31-1 libzstd1_1.5.5+dfsg2-2 linux-libc-dev_6.8.11-1 login_1:4.13+dfsg1-4 m4_1.4.19-4 make_4.3-4.1 man-db_2.12.1-1 mawk_1.3.4.20240123-1 media-types_10.1.0 mount_2.40.1-4 ncurses-base_6.5-2 ncurses-bin_6.5-2 netbase_6.4 passwd_1:4.13+dfsg1-4 patch_2.7.6-7 perl_5.38.2-5 perl-base_5.38.2-5 perl-modules-5.38_5.38.2-5 po-debconf_1.0.21+nmu1 procps_2:4.0.4-4 python3_3.11.8-1 python3-docutils_0.20.1+dfsg-3 python3-minimal_3.11.8-1 python3-roman_3.3-3 python3.11_3.11.9-1 python3.11-minimal_3.11.9-1 readline-common_8.2-4 rpcsvc-proto_1.4.3-1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-2 sensible-utils_0.0.22 sgml-base_1.31 sysvinit-utils_3.09-1 tar_1.35+dfsg-3 tzdata_2024a-4 ucf_3.0043+nmu1 usr-is-merged_39 util-linux_2.40.1-4 xml-core_0.19 xz-utils_5.6.1+really5.4.5-1 zlib1g_1:1.3.dfsg+really1.3.1-1 zlib1g-dev_1:1.3.dfsg+really1.3.1-1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: libpwizlite Binary: libpwizlite-dev, libpwizlite3t64 Architecture: any Version: 3.0.8-1 Maintainer: The Debichem Group Uploaders: Filippo Rusconi Homepage: https://salsa.debian.org/debichem-team/libpwizlite Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/debichem-team/libpwizlite Vcs-Git: https://salsa.debian.org/debichem-team/libpwizlite.git Build-Depends: debhelper-compat (= 13), cmake, dh-exec, dpkg-dev (>= 1.18.25), libboost-dev, libboost-thread-dev, libboost-filesystem-dev, libboost-iostreams-dev, libboost-chrono-dev, zlib1g-dev, python3-docutils, libhdf5-dev Package-List: libpwizlite-dev deb libdevel optional arch=any libpwizlite3t64 deb libs optional arch=any Checksums-Sha1: e55fd47cc2236ffd2034b5ca424f25d3a42f6ef7 832233 libpwizlite_3.0.8.orig.tar.gz 7f5b228b88010083e51115029b412032482b4f2e 8624 libpwizlite_3.0.8-1.debian.tar.xz Checksums-Sha256: 8e316f7578deb71dbf5b54f5f5f6f549427b26a34ea6f80c80e364b5cc50d32d 832233 libpwizlite_3.0.8.orig.tar.gz 713d81eec247d82ba52860db9d8bc2e7ba87b8d5084a83bd979b414f438c2375 8624 libpwizlite_3.0.8-1.debian.tar.xz Files: d2be8d4e7e66308270fe507b34aacf60 832233 libpwizlite_3.0.8.orig.tar.gz 398a7eaa1e0c1af2e7cc4416601b9120 8624 libpwizlite_3.0.8-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCAAdFiEEsFMwThfW1Bndm0ZRQatITXaUz0IFAmZF/2sACgkQQatITXaU z0Lolw/8Dks3DI5cR/1Fg4zTP4OWK1LpLgMsiSp5JpferFt+2r95jRZMTwUtJ9Sf 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dpkg-source: info: unpacking libpwizlite_3.0.8.orig.tar.gz dpkg-source: info: unpacking libpwizlite_3.0.8-1.debian.tar.xz Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.arm64 DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LOGNAME=crossqa OLDPWD=/home/crossqa PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SBUILD_CONFIG=/tmp/tmp.dPJX5jW81Z/sbuild.conf SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=sid-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1000 SCHROOT_GROUP=crossqa SCHROOT_SESSION_ID=sid-amd64-sbuild-69bf0794-84ae-4a73-aaa5-82f3bf4a7261 SCHROOT_UID=1000 SCHROOT_USER=crossqa SHELL=/bin/sh USER=crossqa XDG_SESSION_CLASS=user dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -aarm64 -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package libpwizlite dpkg-buildpackage: info: source version 3.0.8-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Filippo Rusconi dpkg-architecture: warning: specified GNU system type aarch64-linux-gnu does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 fakeroot debian/rules clean dh clean --build-system=cmake debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' rm -f debian/libpwizlite.3 rm -rf debian/includes rm -rf obj-x86_64-linux-gnu dh_clean make[1]: Leaving directory '/<>' dh_autoreconf_clean -O--build-system=cmake dh_clean -O--build-system=cmake debian/rules build-arch dh build-arch --build-system=cmake dh_update_autotools_config -a -O--build-system=cmake dh_autoreconf -a -O--build-system=cmake debian/rules override_dh_auto_configure make[1]: Entering directory '/<>' dh_auto_configure -- \ -DCMAKE_INSTALL_PREFIX="/usr" \ -DCMAKE_BUILD_TYPE=release cd obj-aarch64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_SYSTEM_NAME=Linux -DCMAKE_SYSTEM_PROCESSOR=aarch64 -DCMAKE_C_COMPILER=aarch64-linux-gnu-gcc -DCMAKE_CXX_COMPILER=aarch64-linux-gnu-g\+\+ -DPKG_CONFIG_EXECUTABLE=/usr/bin/aarch64-linux-gnu-pkg-config -DPKGCONFIG_EXECUTABLE=/usr/bin/aarch64-linux-gnu-pkg-config -DQMAKE_EXECUTABLE=/usr/bin/aarch64-linux-gnu-qmake -DCMAKE_INSTALL_LIBDIR=lib/aarch64-linux-gnu -DBUILD_TESTING:BOOL=OFF -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=release .. -- The CXX compiler identification is GNU 13.2.0 -- The C compiler identification is GNU 13.2.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/aarch64-linux-gnu-g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/aarch64-linux-gnu-gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- CMAKE_LIBRARY_ARCHITECTURE: aarch64-linux-gnu -- Set CMAKE_INSTALL_PREFIX to /usr -- Install directory prefix: /usr -- CMAKE_INSTALL_FULL_LIBDIR: /usr/lib/aarch64-linux-gnu -- CMAKE_INSTALL_FULL_INCLUDEDIR: /usr/include Configuring build for project libpwizlite -- Set CMAKE_CXX_STANDARD to 17 (required) -- CMAKE_CXX_COMPILER: /usr/bin/aarch64-linux-gnu-g++ -- Setting definition -Wno-unknown-pragmas. -- Setting definition -Wall. -- Setting definition -Wextra. -- CMAKE_SOURCE_DIR: /<> UNIX non APPLE environment Please run the configuration like this: cmake -G "Unix Makefiles" -DCMAKE_BUILD_TYPE=Debug ../development -- Found ZLIB: /usr/lib/aarch64-linux-gnu/libz.so (found version "1.3.1") -- Found Boost: /usr/lib/aarch64-linux-gnu/cmake/Boost-1.83.0/BoostConfig.cmake (found version "1.83.0") found components: iostreams thread filesystem chrono -- HDF5 C compiler wrapper is unable to compile a minimal HDF5 program. -- Found HDF5: /usr/lib/aarch64-linux-gnu/hdf5/serial/libhdf5.so (found version "1.10.10") -- HDF5 CXX compiler wrapper is unable to compile a minimal HDF5 program. -- Found HDF5: /usr/lib/aarch64-linux-gnu/hdf5/serial/libhdf5_cpp.so;/usr/lib/aarch64-linux-gnu/hdf5/serial/libhdf5.so (found version "1.10.10") found components: CXX -- HDF5_CXX_LIBRARIES: /usr/lib/aarch64-linux-gnu/hdf5/serial/libhdf5_cpp.so;/usr/lib/aarch64-linux-gnu/hdf5/serial/libhdf5.so -- HDF5_CXX_INCLUDE_DIRS: /usr/include/hdf5/serial -- Starting configuration of libpwizlite -- The build toolchain is: Linux  -- CMAKE_CURRENT_BINARY_DIR: /<>/obj-aarch64-linux-gnu -- CMAKE_BUILD_TYPE: release. -- Adding subdirectory src for PROJECT: libpwizlite -- Setting -Wall. -- Boost_LIBRARIES found 1_83 -- Boost_INCLUDES: /usr/include -- Boost_LIB_DIRS: /usr/lib/aarch64-linux-gnu STATUS: Now managing the CPack process -- Configuring done (0.9s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: BUILD_TESTING CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY FETCHCONTENT_FULLY_DISCONNECTED PKGCONFIG_EXECUTABLE PKG_CONFIG_EXECUTABLE QMAKE_EXECUTABLE -- Build files have been written to: /<>/obj-aarch64-linux-gnu rst2man debian/libpwizlite.3.rst > debian/libpwizlite.3 sh debian/make-included-headers-hierarchy.sh baseName: virtual_map.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/virtual_map.hpp' -> '/<>/debian/includes/pwizlite/pwiz/utility/misc/virtual_map.hpp' baseName: unit.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/unit.hpp' -> '/<>/debian/includes/pwizlite/pwiz/utility/misc/unit.hpp' baseName: shared_map.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/shared_map.hpp' -> '/<>/debian/includes/pwizlite/pwiz/utility/misc/shared_map.hpp' baseName: random_access_compressed_ifstream.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/random_access_compressed_ifstream.hpp' -> '/<>/debian/includes/pwizlite/pwiz/utility/misc/random_access_compressed_ifstream.hpp' baseName: optimized_lexical_cast.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/optimized_lexical_cast.hpp' -> '/<>/debian/includes/pwizlite/pwiz/utility/misc/optimized_lexical_cast.hpp' baseName: mru_list.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/mru_list.hpp' -> '/<>/debian/includes/pwizlite/pwiz/utility/misc/mru_list.hpp' baseName: endian.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/endian.hpp' -> '/<>/debian/includes/pwizlite/pwiz/utility/misc/endian.hpp' baseName: cpp_cli_utilities.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/cpp_cli_utilities.hpp' -> '/<>/debian/includes/pwizlite/pwiz/utility/misc/cpp_cli_utilities.hpp' baseName: automation_vector.h dirName: pwiz/utility/misc 'pwiz/utility/misc/automation_vector.h' -> '/<>/debian/includes/pwizlite/pwiz/utility/misc/automation_vector.h' baseName: almost_equal.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/almost_equal.hpp' -> '/<>/debian/includes/pwizlite/pwiz/utility/misc/almost_equal.hpp' baseName: VendorReaderTestHarness.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/VendorReaderTestHarness.hpp' -> '/<>/debian/includes/pwizlite/pwiz/utility/misc/VendorReaderTestHarness.hpp' baseName: Timer.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/Timer.hpp' -> '/<>/debian/includes/pwizlite/pwiz/utility/misc/Timer.hpp' baseName: TabReader.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/TabReader.hpp' -> '/<>/debian/includes/pwizlite/pwiz/utility/misc/TabReader.hpp' baseName: String.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/String.hpp' -> '/<>/debian/includes/pwizlite/pwiz/utility/misc/String.hpp' baseName: Stream.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/Stream.hpp' -> '/<>/debian/includes/pwizlite/pwiz/utility/misc/Stream.hpp' baseName: Std.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/Std.hpp' -> '/<>/debian/includes/pwizlite/pwiz/utility/misc/Std.hpp' baseName: Singleton.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/Singleton.hpp' -> '/<>/debian/includes/pwizlite/pwiz/utility/misc/Singleton.hpp' baseName: SHA1_ostream.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/SHA1_ostream.hpp' -> '/<>/debian/includes/pwizlite/pwiz/utility/misc/SHA1_ostream.hpp' baseName: SHA1Calculator.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/SHA1Calculator.hpp' -> '/<>/debian/includes/pwizlite/pwiz/utility/misc/SHA1Calculator.hpp' baseName: SHA1.h dirName: pwiz/utility/misc 'pwiz/utility/misc/SHA1.h' -> '/<>/debian/includes/pwizlite/pwiz/utility/misc/SHA1.h' baseName: Once.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/Once.hpp' -> '/<>/debian/includes/pwizlite/pwiz/utility/misc/Once.hpp' baseName: MSIHandler.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/MSIHandler.hpp' -> '/<>/debian/includes/pwizlite/pwiz/utility/misc/MSIHandler.hpp' baseName: IterationListener.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/IterationListener.hpp' -> '/<>/debian/includes/pwizlite/pwiz/utility/misc/IterationListener.hpp' baseName: IntegerSet.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/IntegerSet.hpp' -> '/<>/debian/includes/pwizlite/pwiz/utility/misc/IntegerSet.hpp' baseName: Image.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/Image.hpp' -> '/<>/debian/includes/pwizlite/pwiz/utility/misc/Image.hpp' baseName: Filesystem.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/Filesystem.hpp' -> '/<>/debian/includes/pwizlite/pwiz/utility/misc/Filesystem.hpp' baseName: Export.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/Export.hpp' -> '/<>/debian/includes/pwizlite/pwiz/utility/misc/Export.hpp' baseName: Exception.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/Exception.hpp' -> '/<>/debian/includes/pwizlite/pwiz/utility/misc/Exception.hpp' baseName: Environment.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/Environment.hpp' -> '/<>/debian/includes/pwizlite/pwiz/utility/misc/Environment.hpp' baseName: DateTime.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/DateTime.hpp' -> '/<>/debian/includes/pwizlite/pwiz/utility/misc/DateTime.hpp' baseName: Container.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/Container.hpp' -> '/<>/debian/includes/pwizlite/pwiz/utility/misc/Container.hpp' baseName: ClickwrapPrompter.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/ClickwrapPrompter.hpp' -> '/<>/debian/includes/pwizlite/pwiz/utility/misc/ClickwrapPrompter.hpp' baseName: CharIndexedVector.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/CharIndexedVector.hpp' -> '/<>/debian/includes/pwizlite/pwiz/utility/misc/CharIndexedVector.hpp' baseName: COMInitializer.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/COMInitializer.hpp' -> '/<>/debian/includes/pwizlite/pwiz/utility/misc/COMInitializer.hpp' baseName: BinaryData.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/BinaryData.hpp' -> '/<>/debian/includes/pwizlite/pwiz/utility/misc/BinaryData.hpp' baseName: Base64.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/Base64.hpp' -> '/<>/debian/includes/pwizlite/pwiz/utility/misc/Base64.hpp' baseName: XMLWriter.hpp dirName: pwiz/utility/minimxml 'pwiz/utility/minimxml/XMLWriter.hpp' -> '/<>/debian/includes/pwizlite/pwiz/utility/minimxml/XMLWriter.hpp' baseName: SAXParser.hpp dirName: pwiz/utility/minimxml 'pwiz/utility/minimxml/SAXParser.hpp' -> '/<>/debian/includes/pwizlite/pwiz/utility/minimxml/SAXParser.hpp' baseName: round.hpp dirName: pwiz/utility/math 'pwiz/utility/math/round.hpp' -> '/<>/debian/includes/pwizlite/pwiz/utility/math/round.hpp' baseName: qr.hpp dirName: pwiz/utility/math 'pwiz/utility/math/qr.hpp' -> '/<>/debian/includes/pwizlite/pwiz/utility/math/qr.hpp' baseName: erf.hpp dirName: pwiz/utility/math 'pwiz/utility/math/erf.hpp' -> '/<>/debian/includes/pwizlite/pwiz/utility/math/erf.hpp' baseName: Types.hpp dirName: pwiz/utility/math 'pwiz/utility/math/Types.hpp' -> '/<>/debian/includes/pwizlite/pwiz/utility/math/Types.hpp' baseName: Stats.hpp dirName: pwiz/utility/math 'pwiz/utility/math/Stats.hpp' -> '/<>/debian/includes/pwizlite/pwiz/utility/math/Stats.hpp' baseName: Parabola.hpp dirName: pwiz/utility/math 'pwiz/utility/math/Parabola.hpp' -> '/<>/debian/includes/pwizlite/pwiz/utility/math/Parabola.hpp' baseName: OrderedPair.hpp dirName: pwiz/utility/math 'pwiz/utility/math/OrderedPair.hpp' -> '/<>/debian/includes/pwizlite/pwiz/utility/math/OrderedPair.hpp' baseName: MatrixInverse.hpp dirName: pwiz/utility/math 'pwiz/utility/math/MatrixInverse.hpp' -> '/<>/debian/includes/pwizlite/pwiz/utility/math/MatrixInverse.hpp' baseName: MatchedFilter.hpp dirName: pwiz/utility/math 'pwiz/utility/math/MatchedFilter.hpp' -> '/<>/debian/includes/pwizlite/pwiz/utility/math/MatchedFilter.hpp' baseName: LinearSolver.hpp dirName: pwiz/utility/math 'pwiz/utility/math/LinearSolver.hpp' -> '/<>/debian/includes/pwizlite/pwiz/utility/math/LinearSolver.hpp' baseName: LinearLeastSquares.hpp dirName: pwiz/utility/math 'pwiz/utility/math/LinearLeastSquares.hpp' -> '/<>/debian/includes/pwizlite/pwiz/utility/math/LinearLeastSquares.hpp' baseName: HouseholderQR.hpp dirName: pwiz/utility/math 'pwiz/utility/math/HouseholderQR.hpp' -> '/<>/debian/includes/pwizlite/pwiz/utility/math/HouseholderQR.hpp' baseName: determinebinwidth.hpp dirName: pwiz/utility/findmf/base/resample/utilities 'pwiz/utility/findmf/base/resample/utilities/determinebinwidth.hpp' -> '/<>/debian/includes/pwizlite/pwiz/utility/findmf/base/resample/utilities/determinebinwidth.hpp' baseName: masscomparefunctors.hpp dirName: pwiz/utility/findmf/base/resample 'pwiz/utility/findmf/base/resample/masscomparefunctors.hpp' -> '/<>/debian/includes/pwizlite/pwiz/utility/findmf/base/resample/masscomparefunctors.hpp' baseName: determinebinwidth.hpp dirName: pwiz/utility/findmf/base/resample 'pwiz/utility/findmf/base/resample/determinebinwidth.hpp' -> '/<>/debian/includes/pwizlite/pwiz/utility/findmf/base/resample/determinebinwidth.hpp' baseName: breakspec.hpp dirName: pwiz/utility/findmf/base/resample 'pwiz/utility/findmf/base/resample/breakspec.hpp' -> '/<>/debian/includes/pwizlite/pwiz/utility/findmf/base/resample/breakspec.hpp' baseName: bin1d.hpp dirName: pwiz/utility/findmf/base/resample 'pwiz/utility/findmf/base/resample/bin1d.hpp' -> '/<>/debian/includes/pwizlite/pwiz/utility/findmf/base/resample/bin1d.hpp' baseName: preparedata.hpp dirName: pwiz/utility/findmf/base/filter/utilities 'pwiz/utility/findmf/base/filter/utilities/preparedata.hpp' -> '/<>/debian/includes/pwizlite/pwiz/utility/findmf/base/filter/utilities/preparedata.hpp' baseName: gauss.hpp dirName: pwiz/utility/findmf/base/filter/utilities 'pwiz/utility/findmf/base/filter/utilities/gauss.hpp' -> '/<>/debian/includes/pwizlite/pwiz/utility/findmf/base/filter/utilities/gauss.hpp' baseName: gaussfilter.hpp dirName: pwiz/utility/findmf/base/filter 'pwiz/utility/findmf/base/filter/gaussfilter.hpp' -> '/<>/debian/includes/pwizlite/pwiz/utility/findmf/base/filter/gaussfilter.hpp' baseName: filter.hpp dirName: pwiz/utility/findmf/base/filter 'pwiz/utility/findmf/base/filter/filter.hpp' -> '/<>/debian/includes/pwizlite/pwiz/utility/findmf/base/filter/filter.hpp' baseName: interpolation.hpp dirName: pwiz/utility/findmf/base/base/utilities 'pwiz/utility/findmf/base/base/utilities/interpolation.hpp' -> '/<>/debian/includes/pwizlite/pwiz/utility/findmf/base/base/utilities/interpolation.hpp' baseName: base.hpp dirName: pwiz/utility/findmf/base/base/utilities 'pwiz/utility/findmf/base/base/utilities/base.hpp' -> '/<>/debian/includes/pwizlite/pwiz/utility/findmf/base/base/utilities/base.hpp' baseName: scale.hpp dirName: pwiz/utility/findmf/base/base 'pwiz/utility/findmf/base/base/scale.hpp' -> '/<>/debian/includes/pwizlite/pwiz/utility/findmf/base/base/scale.hpp' baseName: interpolate.hpp dirName: pwiz/utility/findmf/base/base 'pwiz/utility/findmf/base/base/interpolate.hpp' -> '/<>/debian/includes/pwizlite/pwiz/utility/findmf/base/base/interpolate.hpp' baseName: diff.hpp dirName: pwiz/utility/findmf/base/base 'pwiz/utility/findmf/base/base/diff.hpp' -> '/<>/debian/includes/pwizlite/pwiz/utility/findmf/base/base/diff.hpp' baseName: copyif.hpp dirName: pwiz/utility/findmf/base/base 'pwiz/utility/findmf/base/base/copyif.hpp' -> '/<>/debian/includes/pwizlite/pwiz/utility/findmf/base/base/copyif.hpp' baseName: constants.hpp dirName: pwiz/utility/findmf/base/base 'pwiz/utility/findmf/base/base/constants.hpp' -> '/<>/debian/includes/pwizlite/pwiz/utility/findmf/base/base/constants.hpp' baseName: base.hpp dirName: pwiz/utility/findmf/base/base 'pwiz/utility/findmf/base/base/base.hpp' -> '/<>/debian/includes/pwizlite/pwiz/utility/findmf/base/base/base.hpp' baseName: MzMobilityWindow.hpp dirName: pwiz/utility/chemistry 'pwiz/utility/chemistry/MzMobilityWindow.hpp' -> '/<>/debian/includes/pwizlite/pwiz/utility/chemistry/MzMobilityWindow.hpp' baseName: MZTolerance.hpp dirName: pwiz/utility/chemistry 'pwiz/utility/chemistry/MZTolerance.hpp' -> '/<>/debian/includes/pwizlite/pwiz/utility/chemistry/MZTolerance.hpp' baseName: IsotopeTable.hpp dirName: pwiz/utility/chemistry 'pwiz/utility/chemistry/IsotopeTable.hpp' -> '/<>/debian/includes/pwizlite/pwiz/utility/chemistry/IsotopeTable.hpp' baseName: IsotopeEnvelopeEstimator.hpp dirName: pwiz/utility/chemistry 'pwiz/utility/chemistry/IsotopeEnvelopeEstimator.hpp' -> '/<>/debian/includes/pwizlite/pwiz/utility/chemistry/IsotopeEnvelopeEstimator.hpp' baseName: IsotopeCalculator.hpp dirName: pwiz/utility/chemistry 'pwiz/utility/chemistry/IsotopeCalculator.hpp' -> '/<>/debian/includes/pwizlite/pwiz/utility/chemistry/IsotopeCalculator.hpp' baseName: Ion.hpp dirName: pwiz/utility/chemistry 'pwiz/utility/chemistry/Ion.hpp' -> '/<>/debian/includes/pwizlite/pwiz/utility/chemistry/Ion.hpp' baseName: ChemistryData.hpp dirName: pwiz/utility/chemistry 'pwiz/utility/chemistry/ChemistryData.hpp' -> '/<>/debian/includes/pwizlite/pwiz/utility/chemistry/ChemistryData.hpp' baseName: Chemistry.hpp dirName: pwiz/utility/chemistry 'pwiz/utility/chemistry/Chemistry.hpp' -> '/<>/debian/includes/pwizlite/pwiz/utility/chemistry/Chemistry.hpp' baseName: Connection_mzMLb.hpp dirName: pwiz/data/msdata/mzmlb 'pwiz/data/msdata/mzmlb/Connection_mzMLb.hpp' -> '/<>/debian/includes/pwizlite/pwiz/data/msdata/mzmlb/Connection_mzMLb.hpp' baseName: examples.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/examples.hpp' -> '/<>/debian/includes/pwizlite/pwiz/data/msdata/examples.hpp' baseName: Version.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/Version.hpp' -> '/<>/debian/includes/pwizlite/pwiz/data/msdata/Version.hpp' baseName: TextWriter.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/TextWriter.hpp' -> '/<>/debian/includes/pwizlite/pwiz/data/msdata/TextWriter.hpp' baseName: SpectrumWorkerThreads.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/SpectrumWorkerThreads.hpp' -> '/<>/debian/includes/pwizlite/pwiz/data/msdata/SpectrumWorkerThreads.hpp' baseName: SpectrumList_mzXML.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/SpectrumList_mzXML.hpp' -> '/<>/debian/includes/pwizlite/pwiz/data/msdata/SpectrumList_mzXML.hpp' baseName: SpectrumList_mzML.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/SpectrumList_mzML.hpp' -> '/<>/debian/includes/pwizlite/pwiz/data/msdata/SpectrumList_mzML.hpp' baseName: SpectrumList_mz5.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/SpectrumList_mz5.hpp' -> '/<>/debian/includes/pwizlite/pwiz/data/msdata/SpectrumList_mz5.hpp' baseName: SpectrumList_MSn.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/SpectrumList_MSn.hpp' -> '/<>/debian/includes/pwizlite/pwiz/data/msdata/SpectrumList_MSn.hpp' baseName: SpectrumList_MGF.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/SpectrumList_MGF.hpp' -> '/<>/debian/includes/pwizlite/pwiz/data/msdata/SpectrumList_MGF.hpp' baseName: SpectrumList_BTDX.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/SpectrumList_BTDX.hpp' -> '/<>/debian/includes/pwizlite/pwiz/data/msdata/SpectrumList_BTDX.hpp' baseName: SpectrumListWrapper.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/SpectrumListWrapper.hpp' -> '/<>/debian/includes/pwizlite/pwiz/data/msdata/SpectrumListWrapper.hpp' baseName: SpectrumListCache.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/SpectrumListCache.hpp' -> '/<>/debian/includes/pwizlite/pwiz/data/msdata/SpectrumListCache.hpp' baseName: SpectrumListBase.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/SpectrumListBase.hpp' -> '/<>/debian/includes/pwizlite/pwiz/data/msdata/SpectrumListBase.hpp' baseName: SpectrumIterator.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/SpectrumIterator.hpp' -> '/<>/debian/includes/pwizlite/pwiz/data/msdata/SpectrumIterator.hpp' baseName: SpectrumInfo.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/SpectrumInfo.hpp' -> '/<>/debian/includes/pwizlite/pwiz/data/msdata/SpectrumInfo.hpp' baseName: Serializer_mzXML.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/Serializer_mzXML.hpp' -> '/<>/debian/includes/pwizlite/pwiz/data/msdata/Serializer_mzXML.hpp' baseName: Serializer_mzML.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/Serializer_mzML.hpp' -> '/<>/debian/includes/pwizlite/pwiz/data/msdata/Serializer_mzML.hpp' baseName: Serializer_mz5.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/Serializer_mz5.hpp' -> '/<>/debian/includes/pwizlite/pwiz/data/msdata/Serializer_mz5.hpp' baseName: Serializer_MSn.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/Serializer_MSn.hpp' -> '/<>/debian/includes/pwizlite/pwiz/data/msdata/Serializer_MSn.hpp' baseName: Serializer_MGF.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/Serializer_MGF.hpp' -> '/<>/debian/includes/pwizlite/pwiz/data/msdata/Serializer_MGF.hpp' baseName: SHA1OutputObserver.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/SHA1OutputObserver.hpp' -> '/<>/debian/includes/pwizlite/pwiz/data/msdata/SHA1OutputObserver.hpp' baseName: References.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/References.hpp' -> '/<>/debian/includes/pwizlite/pwiz/data/msdata/References.hpp' baseName: Reader.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/Reader.hpp' -> '/<>/debian/includes/pwizlite/pwiz/data/msdata/Reader.hpp' baseName: RAMPAdapter.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/RAMPAdapter.hpp' -> '/<>/debian/includes/pwizlite/pwiz/data/msdata/RAMPAdapter.hpp' baseName: MemoryMRUCache.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/MemoryMRUCache.hpp' -> '/<>/debian/includes/pwizlite/pwiz/data/msdata/MemoryMRUCache.hpp' baseName: MSNumpress.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/MSNumpress.hpp' -> '/<>/debian/includes/pwizlite/pwiz/data/msdata/MSNumpress.hpp' baseName: MSDataMerger.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/MSDataMerger.hpp' -> '/<>/debian/includes/pwizlite/pwiz/data/msdata/MSDataMerger.hpp' baseName: MSDataFile.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/MSDataFile.hpp' -> '/<>/debian/includes/pwizlite/pwiz/data/msdata/MSDataFile.hpp' baseName: MSData.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/MSData.hpp' -> '/<>/debian/includes/pwizlite/pwiz/data/msdata/MSData.hpp' baseName: LegacyAdapter.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/LegacyAdapter.hpp' -> '/<>/debian/includes/pwizlite/pwiz/data/msdata/LegacyAdapter.hpp' baseName: Index_mzML.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/Index_mzML.hpp' -> '/<>/debian/includes/pwizlite/pwiz/data/msdata/Index_mzML.hpp' baseName: IO.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/IO.hpp' -> '/<>/debian/includes/pwizlite/pwiz/data/msdata/IO.hpp' baseName: Diff.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/Diff.hpp' -> '/<>/debian/includes/pwizlite/pwiz/data/msdata/Diff.hpp' baseName: DefaultReaderList.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/DefaultReaderList.hpp' -> '/<>/debian/includes/pwizlite/pwiz/data/msdata/DefaultReaderList.hpp' baseName: ChromatogramList_mzML.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/ChromatogramList_mzML.hpp' -> '/<>/debian/includes/pwizlite/pwiz/data/msdata/ChromatogramList_mzML.hpp' baseName: ChromatogramList_mz5.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/ChromatogramList_mz5.hpp' -> '/<>/debian/includes/pwizlite/pwiz/data/msdata/ChromatogramList_mz5.hpp' baseName: ChromatogramListBase.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/ChromatogramListBase.hpp' -> '/<>/debian/includes/pwizlite/pwiz/data/msdata/ChromatogramListBase.hpp' baseName: BinaryDataEncoder.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/BinaryDataEncoder.hpp' -> '/<>/debian/includes/pwizlite/pwiz/data/msdata/BinaryDataEncoder.hpp' baseName: SampleDatum.hpp dirName: pwiz/data/misc 'pwiz/data/misc/SampleDatum.hpp' -> '/<>/debian/includes/pwizlite/pwiz/data/misc/SampleDatum.hpp' baseName: PeakData.hpp dirName: pwiz/data/misc 'pwiz/data/misc/PeakData.hpp' -> '/<>/debian/includes/pwizlite/pwiz/data/misc/PeakData.hpp' baseName: MinimumPepXML.hpp dirName: pwiz/data/misc 'pwiz/data/misc/MinimumPepXML.hpp' -> '/<>/debian/includes/pwizlite/pwiz/data/misc/MinimumPepXML.hpp' baseName: FrequencyDataTestData.hpp dirName: pwiz/data/misc 'pwiz/data/misc/FrequencyDataTestData.hpp' -> '/<>/debian/includes/pwizlite/pwiz/data/misc/FrequencyDataTestData.hpp' baseName: FrequencyData.hpp dirName: pwiz/data/misc 'pwiz/data/misc/FrequencyData.hpp' -> '/<>/debian/includes/pwizlite/pwiz/data/misc/FrequencyData.hpp' baseName: CalibrationParameters.hpp dirName: pwiz/data/misc 'pwiz/data/misc/CalibrationParameters.hpp' -> '/<>/debian/includes/pwizlite/pwiz/data/misc/CalibrationParameters.hpp' baseName: obo.hpp dirName: pwiz/data/common 'pwiz/data/common/obo.hpp' -> '/<>/debian/includes/pwizlite/pwiz/data/common/obo.hpp' baseName: diff_std.hpp dirName: pwiz/data/common 'pwiz/data/common/diff_std.hpp' -> '/<>/debian/includes/pwizlite/pwiz/data/common/diff_std.hpp' baseName: cv.hpp dirName: pwiz/data/common 'pwiz/data/common/cv.hpp' -> '/<>/debian/includes/pwizlite/pwiz/data/common/cv.hpp' baseName: Unimod.hpp dirName: pwiz/data/common 'pwiz/data/common/Unimod.hpp' -> '/<>/debian/includes/pwizlite/pwiz/data/common/Unimod.hpp' baseName: ParamTypes.hpp dirName: pwiz/data/common 'pwiz/data/common/ParamTypes.hpp' -> '/<>/debian/includes/pwizlite/pwiz/data/common/ParamTypes.hpp' baseName: MemoryIndex.hpp dirName: pwiz/data/common 'pwiz/data/common/MemoryIndex.hpp' -> '/<>/debian/includes/pwizlite/pwiz/data/common/MemoryIndex.hpp' baseName: Index.hpp dirName: pwiz/data/common 'pwiz/data/common/Index.hpp' -> '/<>/debian/includes/pwizlite/pwiz/data/common/Index.hpp' baseName: CVTranslator.hpp dirName: pwiz/data/common 'pwiz/data/common/CVTranslator.hpp' -> '/<>/debian/includes/pwizlite/pwiz/data/common/CVTranslator.hpp' baseName: BinaryIndexStream.hpp dirName: pwiz/data/common 'pwiz/data/common/BinaryIndexStream.hpp' -> '/<>/debian/includes/pwizlite/pwiz/data/common/BinaryIndexStream.hpp' baseName: SpectrumList_Demux.hpp dirName: pwiz/analysis/spectrum_processing 'pwiz/analysis/spectrum_processing/SpectrumList_Demux.hpp' -> '/<>/debian/includes/pwizlite/pwiz/analysis/spectrum_processing/SpectrumList_Demux.hpp' baseName: DemuxDataProcessingStrings.hpp dirName: pwiz/analysis/demux 'pwiz/analysis/demux/DemuxDataProcessingStrings.hpp' -> '/<>/debian/includes/pwizlite/pwiz/analysis/demux/DemuxDataProcessingStrings.hpp' baseName: Version.hpp dirName: pwiz 'pwiz/Version.hpp' -> '/<>/debian/includes/pwizlite/pwiz/Version.hpp' baseName: thread_specific_singleton.hpp dirName: boost/utility 'boost/utility/thread_specific_singleton.hpp' -> '/<>/debian/includes/pwizlite/boost/utility/thread_specific_singleton.hpp' baseName: singleton.hpp dirName: boost/utility 'boost/utility/singleton.hpp' -> '/<>/debian/includes/pwizlite/boost/utility/singleton.hpp' baseName: mutexed_singleton.hpp dirName: boost/utility 'boost/utility/mutexed_singleton.hpp' -> '/<>/debian/includes/pwizlite/boost/utility/mutexed_singleton.hpp' baseName: singleton_manager.hpp dirName: boost/utility/detail 'boost/utility/detail/singleton_manager.hpp' -> '/<>/debian/includes/pwizlite/boost/utility/detail/singleton_manager.hpp' baseName: restricted.hpp dirName: boost/utility/detail 'boost/utility/detail/restricted.hpp' -> '/<>/debian/includes/pwizlite/boost/utility/detail/restricted.hpp' baseName: member_dereference.hpp dirName: boost/utility/detail 'boost/utility/detail/member_dereference.hpp' -> '/<>/debian/includes/pwizlite/boost/utility/detail/member_dereference.hpp' baseName: windows.hpp dirName: boost/nowide 'boost/nowide/windows.hpp' -> '/<>/debian/includes/pwizlite/boost/nowide/windows.hpp' baseName: system.hpp dirName: boost/nowide 'boost/nowide/system.hpp' -> '/<>/debian/includes/pwizlite/boost/nowide/system.hpp' baseName: stackstring.hpp dirName: boost/nowide 'boost/nowide/stackstring.hpp' -> '/<>/debian/includes/pwizlite/boost/nowide/stackstring.hpp' baseName: iostream.hpp dirName: boost/nowide 'boost/nowide/iostream.hpp' -> '/<>/debian/includes/pwizlite/boost/nowide/iostream.hpp' baseName: fstream.hpp dirName: boost/nowide 'boost/nowide/fstream.hpp' -> '/<>/debian/includes/pwizlite/boost/nowide/fstream.hpp' baseName: filebuf.hpp dirName: boost/nowide 'boost/nowide/filebuf.hpp' -> '/<>/debian/includes/pwizlite/boost/nowide/filebuf.hpp' baseName: cstdlib.hpp dirName: boost/nowide 'boost/nowide/cstdlib.hpp' -> '/<>/debian/includes/pwizlite/boost/nowide/cstdlib.hpp' baseName: cstdio.hpp dirName: boost/nowide 'boost/nowide/cstdio.hpp' -> '/<>/debian/includes/pwizlite/boost/nowide/cstdio.hpp' baseName: convert.hpp dirName: boost/nowide 'boost/nowide/convert.hpp' -> '/<>/debian/includes/pwizlite/boost/nowide/convert.hpp' baseName: config.hpp dirName: boost/nowide 'boost/nowide/config.hpp' -> '/<>/debian/includes/pwizlite/boost/nowide/config.hpp' baseName: cenv.hpp dirName: boost/nowide 'boost/nowide/cenv.hpp' -> '/<>/debian/includes/pwizlite/boost/nowide/cenv.hpp' baseName: args.hpp dirName: boost/nowide 'boost/nowide/args.hpp' -> '/<>/debian/includes/pwizlite/boost/nowide/args.hpp' baseName: base64.hpp dirName: boost/iostreams/filter 'boost/iostreams/filter/base64.hpp' -> '/<>/debian/includes/pwizlite/boost/iostreams/filter/base64.hpp' baseName: arbitrary_positional_facade.hpp dirName: boost/iostreams 'boost/iostreams/arbitrary_positional_facade.hpp' -> '/<>/debian/includes/pwizlite/boost/iostreams/arbitrary_positional_facade.hpp' baseName: foreach_field.hpp dirName: boost 'boost/foreach_field.hpp' -> '/<>/debian/includes/pwizlite/boost/foreach_field.hpp' baseName: macros.hpp dirName: boost/enum 'boost/enum/macros.hpp' -> '/<>/debian/includes/pwizlite/boost/enum/macros.hpp' baseName: iterator.hpp dirName: boost/enum 'boost/enum/iterator.hpp' -> '/<>/debian/includes/pwizlite/boost/enum/iterator.hpp' baseName: bitfield.hpp dirName: boost/enum 'boost/enum/bitfield.hpp' -> '/<>/debian/includes/pwizlite/boost/enum/bitfield.hpp' baseName: base.hpp dirName: boost/enum 'boost/enum/base.hpp' -> '/<>/debian/includes/pwizlite/boost/enum/base.hpp' baseName: enum.hpp dirName: boost 'boost/enum.hpp' -> '/<>/debian/includes/pwizlite/boost/enum.hpp' make[1]: Leaving directory '/<>' dh_auto_build -a -O--build-system=cmake cd obj-aarch64-linux-gnu && make -j1 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/<>/obj-aarch64-linux-gnu' /usr/bin/cmake -S/<> -B/<>/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/obj-aarch64-linux-gnu/CMakeFiles /<>/obj-aarch64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/<>/obj-aarch64-linux-gnu' make -f src/CMakeFiles/pwizlite-static.dir/build.make src/CMakeFiles/pwizlite-static.dir/depend make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/src /<>/obj-aarch64-linux-gnu/src/CMakeFiles/pwizlite-static.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f src/CMakeFiles/pwizlite-static.dir/build.make src/CMakeFiles/pwizlite-static.dir/build make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 1%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/common/ParamTypes.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -I/<>/obj-aarch64-linux-gnu/src -I/<>/src -I/<>/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/common/ParamTypes.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/common/ParamTypes.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/common/ParamTypes.cpp.o -c /<>/src/pwiz/data/common/ParamTypes.cpp In file included from /usr/include/boost/lexical_cast.hpp:26, from /<>/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /<>/src/pwiz/data/common/ParamTypes.hpp:29, from /<>/src/pwiz/data/common/ParamTypes.cpp:26: /usr/include/boost/iterator.hpp:10:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/src/pwiz/utility/misc/Std.hpp:31, from /<>/src/pwiz/data/common/ParamTypes.cpp:28: /<>/src/pwiz/utility/misc/String.hpp: In lambda function: /<>/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] 87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); | ~~~~~~~~~~~~~~~~~~~~~^~~ [ 2%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/common/CVTranslator.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -I/<>/obj-aarch64-linux-gnu/src -I/<>/src -I/<>/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/common/CVTranslator.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/common/CVTranslator.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/common/CVTranslator.cpp.o -c /<>/src/pwiz/data/common/CVTranslator.cpp In file included from /usr/include/boost/smart_ptr/detail/requires_cxx11.hpp:9, from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, from /usr/include/boost/shared_ptr.hpp:17, from /<>/src/pwiz/data/common/CVTranslator.hpp:31, from /<>/src/pwiz/data/common/CVTranslator.cpp:27: /usr/include/boost/iterator.hpp:10:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/src/pwiz/utility/misc/Std.hpp:31, from /<>/src/pwiz/data/common/CVTranslator.cpp:29: /<>/src/pwiz/utility/misc/String.hpp: In lambda function: /<>/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] 87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); | ~~~~~~~~~~~~~~~~~~~~~^~~ /<>/src/pwiz/data/common/CVTranslator.cpp: In function ‘bool pwiz::data::shouldIgnore(const std::string&, pwiz::cv::CVID, pwiz::cv::CVID)’: /<>/src/pwiz/data/common/CVTranslator.cpp:145:53: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] 145 | return (key=="unit_" && value==MS_unit_OBSOLETE && cvid==UO_unit || | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /<>/src/pwiz/data/common/CVTranslator.cpp:147:40: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] 147 | key=="pi_" && value==MS_PI && cvid==MS_pI || // MS_pI==isoelectric point | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /<>/src/pwiz/data/common/CVTranslator.cpp:148:40: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] 148 | key=="de_" && value==MS_DE && cvid==1001274 || // conflict between 1000246 and 1001274 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /<>/src/pwiz/data/common/CVTranslator.cpp: In function ‘bool pwiz::data::shouldReplace(const std::string&, pwiz::cv::CVID, pwiz::cv::CVID)’: /<>/src/pwiz/data/common/CVTranslator.cpp:153:34: warning: unused parameter ‘key’ [-Wunused-parameter] 153 | bool shouldReplace(const string& key, CVID value, CVID cvid) | ~~~~~~~~~~~~~~^~~ /<>/src/pwiz/data/common/CVTranslator.cpp:153:44: warning: unused parameter ‘value’ [-Wunused-parameter] 153 | bool shouldReplace(const string& key, CVID value, CVID cvid) | ~~~~~^~~~~ /<>/src/pwiz/data/common/CVTranslator.cpp:153:56: warning: unused parameter ‘cvid’ [-Wunused-parameter] 153 | bool shouldReplace(const string& key, CVID value, CVID cvid) | ~~~~~^~~~ [ 3%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/common/cv.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -I/<>/obj-aarch64-linux-gnu/src -I/<>/src -I/<>/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/common/cv.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/common/cv.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/common/cv.cpp.o -c /<>/src/pwiz/data/common/cv.cpp In file included from /usr/include/boost/lexical_cast.hpp:26, from /<>/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /<>/src/pwiz/utility/misc/Environment.hpp:24, from /<>/src/pwiz/utility/misc/Std.hpp:29, from /<>/src/pwiz/data/common/cv.cpp:34: /usr/include/boost/iterator.hpp:10:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/src/pwiz/utility/misc/Std.hpp:31: /<>/src/pwiz/utility/misc/String.hpp: In lambda function: /<>/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] 87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); | ~~~~~~~~~~~~~~~~~~~~~^~~ In file included from /<>/src/pwiz/data/common/cv.cpp:26735: /<>/src/pwiz/data/common/cv.inl: In function ‘const pwiz::cv::CVTermInfo& pwiz::cv::cvTermInfo(const char*)’: /<>/src/pwiz/data/common/cv.inl:103:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const size_t’ {aka ‘const long unsigned int’} [-Wsign-compare] 103 | for (int o=0;o>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -I/<>/obj-aarch64-linux-gnu/src -I/<>/src -I/<>/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/common/diff_std.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/common/diff_std.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/common/diff_std.cpp.o -c /<>/src/pwiz/data/common/diff_std.cpp In file included from /<>/src/pwiz/data/common/diff_std.cpp:27: /<>/src/pwiz/utility/misc/String.hpp: In lambda function: /<>/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] 87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); | ~~~~~~~~~~~~~~~~~~~~~^~~ /<>/src/pwiz/data/common/diff_std.cpp: In function ‘void pwiz::data::diff_impl::diff(const std::string&, const std::string&, std::string&, std::string&, const pwiz::data::BaseDiffConfig&)’: /<>/src/pwiz/data/common/diff_std.cpp:40:33: warning: unused parameter ‘config’ [-Wunused-parameter] 40 | const BaseDiffConfig& config) | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /<>/src/pwiz/data/common/diff_std.cpp: In function ‘void pwiz::data::diff_impl::diff(const boost::logic::tribool&, const boost::logic::tribool&, boost::logic::tribool&, boost::logic::tribool&, const pwiz::data::BaseDiffConfig&)’: /<>/src/pwiz/data/common/diff_std.cpp:88:33: warning: unused parameter ‘config’ [-Wunused-parameter] 88 | const BaseDiffConfig& config) | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /<>/src/pwiz/data/common/diff_std.cpp: In function ‘void pwiz::data::diff_impl::diff(pwiz::cv::CVID, pwiz::cv::CVID, pwiz::cv::CVID&, pwiz::cv::CVID&, const pwiz::data::BaseDiffConfig&)’: /<>/src/pwiz/data/common/diff_std.cpp:124:33: warning: unused parameter ‘config’ [-Wunused-parameter] 124 | const BaseDiffConfig& config) | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~ [ 6%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/ChromatogramList_mzML.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -I/<>/obj-aarch64-linux-gnu/src -I/<>/src -I/<>/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/ChromatogramList_mzML.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/ChromatogramList_mzML.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/ChromatogramList_mzML.cpp.o -c /<>/src/pwiz/data/msdata/ChromatogramList_mzML.cpp In file included from /<>/src/pwiz/data/msdata/MSData.hpp:29, from /<>/src/pwiz/data/msdata/ChromatogramListBase.hpp:28, from /<>/src/pwiz/data/msdata/ChromatogramList_mzML.hpp:29, from /<>/src/pwiz/data/msdata/ChromatogramList_mzML.cpp:26: /<>/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/13/bits/stl_algobase.h:65, from /usr/aarch64-linux-gnu/include/c++/13/algorithm:60, from /<>/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/aarch64-linux-gnu/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/aarch64-linux-gnu/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /<>/src/pwiz/data/msdata/MSData.hpp: In member function ‘virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const’: /<>/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter ‘msg’ [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /<>/src/pwiz/data/msdata/MSData.hpp: In member function ‘virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const’: /<>/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter ‘msg’ [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ In file included from /<>/src/pwiz/data/msdata/IO.hpp:32, from /<>/src/pwiz/data/msdata/ChromatogramList_mzML.cpp:27: /<>/src/pwiz/utility/misc/IterationListener.hpp: In member function ‘virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)’: /<>/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter ‘updateMessage’ [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ In file included from /<>/src/pwiz/data/msdata/ChromatogramList_mzML.cpp:29: /<>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)’: /<>/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter ‘name’ [-Wunused-parameter] 585 | virtual Status processingInstruction(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter ‘data’ [-Wunused-parameter] 586 | const std::string& data, | ~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter ‘position’ [-Wunused-parameter] 587 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)’: /<>/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter ‘name’ [-Wunused-parameter] 589 | virtual Status startElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter ‘attributes’ [-Wunused-parameter] 590 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter ‘position’ [-Wunused-parameter] 591 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)’: /<>/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter ‘name’ [-Wunused-parameter] 593 | virtual Status endElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter ‘position’ [-Wunused-parameter] 594 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)’: /<>/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter ‘text’ [-Wunused-parameter] 596 | virtual Status characters(const SAXParser::saxstring& text, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter ‘position’ [-Wunused-parameter] 597 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /<>/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /<>/src/pwiz/data/common/ParamTypes.hpp:29, from /<>/src/pwiz/data/msdata/MSData.hpp:30: /usr/include/boost/iterator.hpp: At global scope: /usr/include/boost/iterator.hpp:10:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/src/pwiz/utility/misc/Std.hpp:31, from /<>/src/pwiz/data/msdata/ChromatogramList_mzML.cpp:31: /<>/src/pwiz/utility/misc/String.hpp: In lambda function: /<>/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] 87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); | ~~~~~~~~~~~~~~~~~~~~~^~~ [ 7%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/LegacyAdapter.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -I/<>/obj-aarch64-linux-gnu/src -I/<>/src -I/<>/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/LegacyAdapter.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/LegacyAdapter.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/LegacyAdapter.cpp.o -c /<>/src/pwiz/data/msdata/LegacyAdapter.cpp In file included from /<>/src/pwiz/data/msdata/MSData.hpp:29, from /<>/src/pwiz/data/msdata/LegacyAdapter.hpp:30, from /<>/src/pwiz/data/msdata/LegacyAdapter.cpp:27: /<>/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/13/bits/stl_algobase.h:65, from /usr/aarch64-linux-gnu/include/c++/13/algorithm:60, from /<>/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/aarch64-linux-gnu/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/aarch64-linux-gnu/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /<>/src/pwiz/data/msdata/MSData.hpp: In member function ‘virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const’: /<>/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter ‘msg’ [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /<>/src/pwiz/data/msdata/MSData.hpp: In member function ‘virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const’: /<>/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter ‘msg’ [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /<>/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /<>/src/pwiz/data/common/ParamTypes.hpp:29, from /<>/src/pwiz/data/msdata/MSData.hpp:30: /usr/include/boost/iterator.hpp: At global scope: /usr/include/boost/iterator.hpp:10:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/src/pwiz/utility/misc/Std.hpp:31, from /<>/src/pwiz/data/msdata/LegacyAdapter.cpp:31: /<>/src/pwiz/utility/misc/String.hpp: In lambda function: /<>/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] 87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); | ~~~~~~~~~~~~~~~~~~~~~^~~ [ 8%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/MSNumpress.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -I/<>/obj-aarch64-linux-gnu/src -I/<>/src -I/<>/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/MSNumpress.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/MSNumpress.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/MSNumpress.cpp.o -c /<>/src/pwiz/data/msdata/MSNumpress.cpp /<>/src/pwiz/data/msdata/MSNumpress.cpp: In function ‘void pwiz::msdata::MSNumpress::encodeInt(int, unsigned char*, size_t*)’: /<>/src/pwiz/data/msdata/MSNumpress.cpp:114:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 114 | } else if (init == mask) { | ~~~~~^~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/13/iostream:41, from /<>/src/pwiz/data/msdata/MSNumpress.cpp:27: In member function ‘std::basic_ostream<_CharT, _Traits>::__ostream_type& std::basic_ostream<_CharT, _Traits>::operator<<(long long int) [with _CharT = char; _Traits = std::char_traits]’, inlined from ‘size_t pwiz::msdata::MSNumpress::decodeLinear(const unsigned char*, size_t, double*)’ at /<>/src/pwiz/data/msdata/MSNumpress.cpp:403:33: /usr/aarch64-linux-gnu/include/c++/13/ostream:204:25: warning: ‘extrapol’ may be used uninitialized [-Wmaybe-uninitialized] 204 | { return _M_insert(__n); } | ~~~~~~~~~^~~~~ /<>/src/pwiz/data/msdata/MSNumpress.cpp: In function ‘size_t pwiz::msdata::MSNumpress::decodeLinear(const unsigned char*, size_t, double*)’: /<>/src/pwiz/data/msdata/MSNumpress.cpp:346:15: note: ‘extrapol’ was declared here 346 | long long extrapol; | ^~~~~~~~ In member function ‘std::basic_ostream<_CharT, _Traits>::__ostream_type& std::basic_ostream<_CharT, _Traits>::operator<<(long long int) [with _CharT = char; _Traits = std::char_traits]’, inlined from ‘size_t pwiz::msdata::MSNumpress::decodeLinear(const unsigned char*, size_t, double*)’ at /<>/src/pwiz/data/msdata/MSNumpress.cpp:404:26: /usr/aarch64-linux-gnu/include/c++/13/ostream:204:25: warning: ‘y’ may be used uninitialized [-Wmaybe-uninitialized] 204 | { return _M_insert(__n); } | ~~~~~~~~~^~~~~ /<>/src/pwiz/data/msdata/MSNumpress.cpp: In function ‘size_t pwiz::msdata::MSNumpress::decodeLinear(const unsigned char*, size_t, double*)’: /<>/src/pwiz/data/msdata/MSNumpress.cpp:347:15: note: ‘y’ was declared here 347 | long long y; | ^ [ 9%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/References.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -I/<>/obj-aarch64-linux-gnu/src -I/<>/src -I/<>/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/References.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/References.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/References.cpp.o -c /<>/src/pwiz/data/msdata/References.cpp In file included from /<>/src/pwiz/data/msdata/MSData.hpp:29, from /<>/src/pwiz/data/msdata/References.hpp:29, from /<>/src/pwiz/data/msdata/References.cpp:25: /<>/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/13/bits/stl_algobase.h:65, from /usr/aarch64-linux-gnu/include/c++/13/algorithm:60, from /<>/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/aarch64-linux-gnu/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/aarch64-linux-gnu/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /<>/src/pwiz/data/msdata/MSData.hpp: In member function ‘virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const’: /<>/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter ‘msg’ [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /<>/src/pwiz/data/msdata/MSData.hpp: In member function ‘virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const’: /<>/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter ‘msg’ [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /<>/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /<>/src/pwiz/data/common/ParamTypes.hpp:29, from /<>/src/pwiz/data/msdata/MSData.hpp:30: /usr/include/boost/iterator.hpp: At global scope: /usr/include/boost/iterator.hpp:10:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/src/pwiz/utility/misc/Std.hpp:31, from /<>/src/pwiz/data/msdata/References.cpp:26: /<>/src/pwiz/utility/misc/String.hpp: In lambda function: /<>/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] 87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); | ~~~~~~~~~~~~~~~~~~~~~^~~ [ 10%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumInfo.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -I/<>/obj-aarch64-linux-gnu/src -I/<>/src -I/<>/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumInfo.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumInfo.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumInfo.cpp.o -c /<>/src/pwiz/data/msdata/SpectrumInfo.cpp In file included from /<>/src/pwiz/data/msdata/MSData.hpp:29, from /<>/src/pwiz/data/msdata/SpectrumInfo.hpp:29, from /<>/src/pwiz/data/msdata/SpectrumInfo.cpp:27: /<>/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/13/bits/stl_algobase.h:65, from /usr/aarch64-linux-gnu/include/c++/13/algorithm:60, from /<>/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/aarch64-linux-gnu/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/aarch64-linux-gnu/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /<>/src/pwiz/data/msdata/MSData.hpp: In member function ‘virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const’: /<>/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter ‘msg’ [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /<>/src/pwiz/data/msdata/MSData.hpp: In member function ‘virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const’: /<>/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter ‘msg’ [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /<>/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /<>/src/pwiz/data/common/ParamTypes.hpp:29, from /<>/src/pwiz/data/msdata/MSData.hpp:30: /usr/include/boost/iterator.hpp: At global scope: /usr/include/boost/iterator.hpp:10:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/src/pwiz/utility/misc/Std.hpp:31, from /<>/src/pwiz/data/msdata/SpectrumInfo.cpp:29: /<>/src/pwiz/utility/misc/String.hpp: In lambda function: /<>/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] 87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); | ~~~~~~~~~~~~~~~~~~~~~^~~ [ 12%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_BTDX.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -I/<>/obj-aarch64-linux-gnu/src -I/<>/src -I/<>/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_BTDX.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_BTDX.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_BTDX.cpp.o -c /<>/src/pwiz/data/msdata/SpectrumList_BTDX.cpp In file included from /<>/src/pwiz/data/msdata/MSData.hpp:29, from /<>/src/pwiz/data/msdata/SpectrumListBase.hpp:28, from /<>/src/pwiz/data/msdata/SpectrumList_BTDX.hpp:30, from /<>/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:26: /<>/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/13/bits/stl_algobase.h:65, from /usr/aarch64-linux-gnu/include/c++/13/algorithm:60, from /<>/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/aarch64-linux-gnu/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/aarch64-linux-gnu/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /<>/src/pwiz/data/msdata/MSData.hpp: In member function ‘virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const’: /<>/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter ‘msg’ [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /<>/src/pwiz/data/msdata/MSData.hpp: In member function ‘virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const’: /<>/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter ‘msg’ [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ In file included from /<>/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:28: /<>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)’: /<>/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter ‘name’ [-Wunused-parameter] 585 | virtual Status processingInstruction(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter ‘data’ [-Wunused-parameter] 586 | const std::string& data, | ~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter ‘position’ [-Wunused-parameter] 587 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)’: /<>/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter ‘name’ [-Wunused-parameter] 589 | virtual Status startElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter ‘attributes’ [-Wunused-parameter] 590 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter ‘position’ [-Wunused-parameter] 591 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)’: /<>/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter ‘name’ [-Wunused-parameter] 593 | virtual Status endElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter ‘position’ [-Wunused-parameter] 594 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)’: /<>/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter ‘text’ [-Wunused-parameter] 596 | virtual Status characters(const SAXParser::saxstring& text, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter ‘position’ [-Wunused-parameter] 597 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /<>/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /<>/src/pwiz/data/common/ParamTypes.hpp:29, from /<>/src/pwiz/data/msdata/MSData.hpp:30: /usr/include/boost/iterator.hpp: At global scope: /usr/include/boost/iterator.hpp:10:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/src/pwiz/utility/misc/Std.hpp:31, from /<>/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:29: /<>/src/pwiz/utility/misc/String.hpp: In lambda function: /<>/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] 87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); | ~~~~~~~~~~~~~~~~~~~~~^~~ /<>/src/pwiz/data/msdata/SpectrumList_BTDX.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerPeaks::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)’: /<>/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:121:47: warning: unused parameter ‘position’ [-Wunused-parameter] 121 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/data/msdata/SpectrumList_BTDX.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerPeaks::endElement(const std::string&, pwiz::minimxml::SAXParser::Handler::stream_offset)’: /<>/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:162:45: warning: unused parameter ‘position’ [-Wunused-parameter] 162 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/data/msdata/SpectrumList_BTDX.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexCreator::endElement(const std::string&, pwiz::minimxml::SAXParser::Handler::stream_offset)’: /<>/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:356:45: warning: unused parameter ‘position’ [-Wunused-parameter] 356 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ [ 13%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_mzML.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -I/<>/obj-aarch64-linux-gnu/src -I/<>/src -I/<>/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_mzML.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_mzML.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_mzML.cpp.o -c /<>/src/pwiz/data/msdata/SpectrumList_mzML.cpp In file included from /<>/src/pwiz/data/msdata/MSData.hpp:29, from /<>/src/pwiz/data/msdata/SpectrumListBase.hpp:28, from /<>/src/pwiz/data/msdata/SpectrumList_mzML.hpp:29, from /<>/src/pwiz/data/msdata/SpectrumList_mzML.cpp:26: /<>/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/13/bits/stl_algobase.h:65, from /usr/aarch64-linux-gnu/include/c++/13/algorithm:60, from /<>/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/aarch64-linux-gnu/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/aarch64-linux-gnu/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /<>/src/pwiz/data/msdata/MSData.hpp: In member function ‘virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const’: /<>/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter ‘msg’ [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /<>/src/pwiz/data/msdata/MSData.hpp: In member function ‘virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const’: /<>/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter ‘msg’ [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ In file included from /<>/src/pwiz/data/msdata/IO.hpp:32, from /<>/src/pwiz/data/msdata/SpectrumList_mzML.cpp:27: /<>/src/pwiz/utility/misc/IterationListener.hpp: In member function ‘virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)’: /<>/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter ‘updateMessage’ [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ In file included from /<>/src/pwiz/data/msdata/SpectrumList_mzML.cpp:29: /<>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)’: /<>/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter ‘name’ [-Wunused-parameter] 585 | virtual Status processingInstruction(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter ‘data’ [-Wunused-parameter] 586 | const std::string& data, | ~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter ‘position’ [-Wunused-parameter] 587 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)’: /<>/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter ‘name’ [-Wunused-parameter] 589 | virtual Status startElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter ‘attributes’ [-Wunused-parameter] 590 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter ‘position’ [-Wunused-parameter] 591 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)’: /<>/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter ‘name’ [-Wunused-parameter] 593 | virtual Status endElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter ‘position’ [-Wunused-parameter] 594 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)’: /<>/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter ‘text’ [-Wunused-parameter] 596 | virtual Status characters(const SAXParser::saxstring& text, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter ‘position’ [-Wunused-parameter] 597 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /<>/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /<>/src/pwiz/data/common/ParamTypes.hpp:29, from /<>/src/pwiz/data/msdata/MSData.hpp:30: /usr/include/boost/iterator.hpp: At global scope: /usr/include/boost/iterator.hpp:10:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/src/pwiz/utility/misc/Std.hpp:31, from /<>/src/pwiz/data/msdata/SpectrumList_mzML.cpp:30: /<>/src/pwiz/utility/misc/String.hpp: In lambda function: /<>/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] 87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); | ~~~~~~~~~~~~~~~~~~~~~^~~ /usr/include/boost/bind.hpp: At global scope: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ [ 14%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_mzXML.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -I/<>/obj-aarch64-linux-gnu/src -I/<>/src -I/<>/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_mzXML.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_mzXML.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_mzXML.cpp.o -c /<>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp In file included from /<>/src/pwiz/data/msdata/MSData.hpp:29, from /<>/src/pwiz/data/msdata/SpectrumListBase.hpp:28, from /<>/src/pwiz/data/msdata/SpectrumList_mzXML.hpp:29, from /<>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:25: /<>/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/13/bits/stl_algobase.h:65, from /usr/aarch64-linux-gnu/include/c++/13/algorithm:60, from /<>/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/aarch64-linux-gnu/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/aarch64-linux-gnu/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /<>/src/pwiz/data/msdata/MSData.hpp: In member function ‘virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const’: /<>/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter ‘msg’ [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /<>/src/pwiz/data/msdata/MSData.hpp: In member function ‘virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const’: /<>/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter ‘msg’ [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ In file included from /<>/src/pwiz/data/msdata/IO.hpp:32, from /<>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:26: /<>/src/pwiz/utility/misc/IterationListener.hpp: In member function ‘virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)’: /<>/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter ‘updateMessage’ [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ In file included from /<>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:28: /<>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)’: /<>/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter ‘name’ [-Wunused-parameter] 585 | virtual Status processingInstruction(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter ‘data’ [-Wunused-parameter] 586 | const std::string& data, | ~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter ‘position’ [-Wunused-parameter] 587 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)’: /<>/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter ‘name’ [-Wunused-parameter] 589 | virtual Status startElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter ‘attributes’ [-Wunused-parameter] 590 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter ‘position’ [-Wunused-parameter] 591 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)’: /<>/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter ‘name’ [-Wunused-parameter] 593 | virtual Status endElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter ‘position’ [-Wunused-parameter] 594 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)’: /<>/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter ‘text’ [-Wunused-parameter] 596 | virtual Status characters(const SAXParser::saxstring& text, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter ‘position’ [-Wunused-parameter] 597 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /<>/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /<>/src/pwiz/data/common/ParamTypes.hpp:29, from /<>/src/pwiz/data/msdata/MSData.hpp:30: /usr/include/boost/iterator.hpp: At global scope: /usr/include/boost/iterator.hpp:10:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/src/pwiz/utility/misc/Std.hpp:31, from /<>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:29: /<>/src/pwiz/utility/misc/String.hpp: In lambda function: /<>/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] 87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); | ~~~~~~~~~~~~~~~~~~~~~^~~ /<>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In constructor ‘pwiz::msdata::{anonymous}::SpectrumList_mzXMLImpl::SpectrumList_mzXMLImpl(boost::shared_ptr >, const pwiz::msdata::MSData&, bool)’: /<>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:84:30: warning: catching polymorphic type ‘struct pwiz::msdata::SpectrumList_mzXML::index_not_found’ by value [-Wcatch-value=] 84 | } catch (index_not_found e){ | ^ /<>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerPrecursor::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)’: /<>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:128:47: warning: unused parameter ‘position’ [-Wunused-parameter] 128 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerPrecursor::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)’: /<>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:212:45: warning: unused parameter ‘position’ [-Wunused-parameter] 212 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerPeaks::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)’: /<>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:239:47: warning: unused parameter ‘position’ [-Wunused-parameter] 239 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerPeaks::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)’: /<>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:282:45: warning: unused parameter ‘position’ [-Wunused-parameter] 282 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerPeaks::endElement(const std::string&, pwiz::minimxml::SAXParser::Handler::stream_offset)’: /<>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:302:70: warning: unused parameter ‘position’ [-Wunused-parameter] 302 | virtual Status endElement(const std::string& name, stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexOffset::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)’: /<>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:701:51: warning: unused parameter ‘attributes’ [-Wunused-parameter] 701 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /<>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:702:47: warning: unused parameter ‘position’ [-Wunused-parameter] 702 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexOffset::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)’: /<>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:710:45: warning: unused parameter ‘position’ [-Wunused-parameter] 710 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerOffset::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)’: /<>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:736:47: warning: unused parameter ‘position’ [-Wunused-parameter] 736 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerOffset::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)’: /<>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:754:45: warning: unused parameter ‘position’ [-Wunused-parameter] 754 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndex::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)’: /<>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:778:51: warning: unused parameter ‘attributes’ [-Wunused-parameter] 778 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /<>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:779:47: warning: unused parameter ‘position’ [-Wunused-parameter] 779 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndex::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)’: /<>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:796:59: warning: unused parameter ‘text’ [-Wunused-parameter] 796 | virtual Status characters(const SAXParser::saxstring& text, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:797:45: warning: unused parameter ‘position’ [-Wunused-parameter] 797 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexCreator::endElement(const std::string&, pwiz::minimxml::SAXParser::Handler::stream_offset)’: /<>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:885:45: warning: unused parameter ‘position’ [-Wunused-parameter] 885 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ [ 15%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Version.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -I/<>/obj-aarch64-linux-gnu/src -I/<>/src -I/<>/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Version.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Version.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Version.cpp.o -c /<>/src/pwiz/data/msdata/Version.cpp [ 17%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/BinaryDataEncoder.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -I/<>/obj-aarch64-linux-gnu/src -I/<>/src -I/<>/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/BinaryDataEncoder.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/BinaryDataEncoder.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/BinaryDataEncoder.cpp.o -c /<>/src/pwiz/data/msdata/BinaryDataEncoder.cpp In file included from /<>/src/pwiz/data/msdata/BinaryDataEncoder.hpp:29, from /<>/src/pwiz/data/msdata/BinaryDataEncoder.cpp:26: /<>/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/13/bits/stl_algobase.h:65, from /usr/aarch64-linux-gnu/include/c++/13/algorithm:60, from /<>/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/aarch64-linux-gnu/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/aarch64-linux-gnu/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/requires_cxx11.hpp:9, from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, from /usr/include/boost/shared_ptr.hpp:17, from /<>/src/pwiz/data/msdata/BinaryDataEncoder.hpp:30: /usr/include/boost/iterator.hpp:10:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/src/pwiz/utility/misc/Std.hpp:31, from /<>/src/pwiz/data/msdata/BinaryDataEncoder.cpp:38: /<>/src/pwiz/utility/misc/String.hpp: In lambda function: /<>/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] 87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); | ~~~~~~~~~~~~~~~~~~~~~^~~ /<>/src/pwiz/data/msdata/BinaryDataEncoder.cpp: In member function ‘void pwiz::msdata::BinaryDataEncoder::Impl::encode(const double*, size_t, std::string&, size_t*)’: /<>/src/pwiz/data/msdata/BinaryDataEncoder.cpp:305:37: warning: ‘byteCount’ may be used uninitialized [-Wmaybe-uninitialized] 305 | filterArray(byteBuffer, byteCount,compressed); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/pwiz/data/msdata/BinaryDataEncoder.cpp:131:12: note: ‘byteCount’ was declared here 131 | size_t byteCount; | ^~~~~~~~~ /<>/src/pwiz/data/msdata/BinaryDataEncoder.cpp:305:37: warning: ‘byteBuffer’ may be used uninitialized [-Wmaybe-uninitialized] 305 | filterArray(byteBuffer, byteCount,compressed); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/pwiz/data/msdata/BinaryDataEncoder.cpp:132:17: note: ‘byteBuffer’ was declared here 132 | const void* byteBuffer; | ^~~~~~~~~~ [ 18%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/DefaultReaderList.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -I/<>/obj-aarch64-linux-gnu/src -I/<>/src -I/<>/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/DefaultReaderList.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/DefaultReaderList.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/DefaultReaderList.cpp.o -c /<>/src/pwiz/data/msdata/DefaultReaderList.cpp In file included from /usr/include/boost/lexical_cast.hpp:26, from /<>/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /<>/src/pwiz/utility/misc/Environment.hpp:24, from /<>/src/pwiz/utility/misc/Std.hpp:29, from /<>/src/pwiz/data/msdata/DefaultReaderList.cpp:26: /usr/include/boost/iterator.hpp:10:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/src/pwiz/utility/misc/Std.hpp:31: /<>/src/pwiz/utility/misc/String.hpp: In lambda function: /<>/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] 87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); | ~~~~~~~~~~~~~~~~~~~~~^~~ In file included from /<>/src/pwiz/data/msdata/DefaultReaderList.cpp:28: /<>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)’: /<>/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter ‘name’ [-Wunused-parameter] 585 | virtual Status processingInstruction(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter ‘data’ [-Wunused-parameter] 586 | const std::string& data, | ~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter ‘position’ [-Wunused-parameter] 587 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)’: /<>/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter ‘name’ [-Wunused-parameter] 589 | virtual Status startElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter ‘attributes’ [-Wunused-parameter] 590 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter ‘position’ [-Wunused-parameter] 591 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)’: /<>/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter ‘name’ [-Wunused-parameter] 593 | virtual Status endElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter ‘position’ [-Wunused-parameter] 594 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)’: /<>/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter ‘text’ [-Wunused-parameter] 596 | virtual Status characters(const SAXParser::saxstring& text, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter ‘position’ [-Wunused-parameter] 597 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ In file included from /<>/src/pwiz/data/msdata/Reader.hpp:28, from /<>/src/pwiz/data/msdata/DefaultReaderList.hpp:29, from /<>/src/pwiz/data/msdata/DefaultReaderList.cpp:29: /<>/src/pwiz/utility/misc/IterationListener.hpp: In member function ‘virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)’: /<>/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter ‘updateMessage’ [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ In file included from /<>/src/pwiz/data/msdata/Reader.hpp:29: /<>/src/pwiz/utility/chemistry/MzMobilityWindow.hpp: In member function ‘bool pwiz::chemistry::MzMobilityWindow::mobilityValueInBounds(double) const’: /<>/src/pwiz/utility/chemistry/MzMobilityWindow.hpp:40:59: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] 40 | mobilityBounds.get().first < mobilityValue && mobilityValue < mobilityBounds.get().second; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/src/pwiz/data/msdata/MSData.hpp:29, from /<>/src/pwiz/data/msdata/Reader.hpp:30: /<>/src/pwiz/utility/misc/BinaryData.hpp: At global scope: /<>/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/13/bits/stl_iterator_base_funcs.h:66, from /usr/aarch64-linux-gnu/include/c++/13/string:47, from /usr/aarch64-linux-gnu/include/c++/13/stdexcept:39, from /<>/src/pwiz/utility/misc/Exception.hpp:28, from /<>/src/pwiz/utility/misc/Std.hpp:28: /usr/aarch64-linux-gnu/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/aarch64-linux-gnu/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /<>/src/pwiz/data/msdata/MSData.hpp: In member function ‘virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const’: /<>/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter ‘msg’ [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /<>/src/pwiz/data/msdata/MSData.hpp: In member function ‘virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const’: /<>/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter ‘msg’ [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /<>/src/pwiz/data/msdata/DefaultReaderList.hpp: In member function ‘virtual std::string pwiz::msdata::Reader_MS2::identify(const std::string&, const std::string&) const’: /<>/src/pwiz/data/msdata/DefaultReaderList.hpp:98:53: warning: unused parameter ‘filename’ [-Wunused-parameter] 98 | virtual std::string identify(const std::string& filename, const std::string& head) const { return ""; } | ~~~~~~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/data/msdata/DefaultReaderList.hpp:98:82: warning: unused parameter ‘head’ [-Wunused-parameter] 98 | virtual std::string identify(const std::string& filename, const std::string& head) const { return ""; } | ~~~~~~~~~~~~~~~~~~~^~~~ In file included from /<>/src/pwiz/data/msdata/DefaultReaderList.cpp:27: /<>/src/pwiz/data/msdata/DefaultReaderList.cpp: In function ‘void pwiz::msdata::{anonymous}::appendSourceFile(const std::string&, pwiz::msdata::MSData&)’: /<>/src/pwiz/data/msdata/DefaultReaderList.cpp:65:58: warning: ‘boost::filesystem::path boost::filesystem::path::leaf() const’ is deprecated: Use path::filename() instead [-Wdeprecated-declarations] 65 | sourceFile->id = sourceFile->name = BFS_STRING(p.leaf()); | ~~~~~~^~ /<>/src/pwiz/utility/misc/Filesystem.hpp:64:24: note: in definition of macro ‘BFS_STRING’ 64 | #define BFS_STRING(p) (p).string() | ^ In file included from /usr/include/boost/filesystem/operations.hpp:20, from /<>/src/pwiz/utility/misc/Filesystem.hpp:36: /usr/include/boost/filesystem/path.hpp:1127:10: note: declared here 1127 | path leaf() const { return filename(); } | ^~~~ /<>/src/pwiz/data/msdata/DefaultReaderList.cpp:66:67: warning: ‘boost::filesystem::path boost::filesystem::path::branch_path() const’ is deprecated: Use path::parent_path() instead [-Wdeprecated-declarations] 66 | sourceFile->location = "file:///" + BFS_COMPLETE(p.branch_path()).string(); | ~~~~~~~~~~~~~^~ /usr/include/boost/filesystem/path.hpp:1129:10: note: declared here 1129 | path branch_path() const { return parent_path(); } | ^~~~~~~~~~~ /<>/src/pwiz/data/msdata/DefaultReaderList.cpp: In function ‘void pwiz::msdata::{anonymous}::fillInCommonMetadata(const std::string&, pwiz::msdata::MSData&)’: /<>/src/pwiz/data/msdata/DefaultReaderList.cpp:107:44: warning: ‘std::string boost::filesystem::basename(const path&)’ is deprecated: Use path::stem() instead [-Wdeprecated-declarations] 107 | msd.id = msd.run.id = bfs::basename(filename); | ~~~~~~~~~~~~~^~~~~~~~~~ In file included from /<>/src/pwiz/utility/misc/Filesystem.hpp:37: /usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here 35 | inline std::string basename(const path& p) | ^~~~~~~~ /<>/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function ‘virtual std::string pwiz::msdata::Reader_mzML::identify(const std::string&, const std::string&) const’: /<>/src/pwiz/data/msdata/DefaultReaderList.cpp:126:68: warning: unused parameter ‘filename’ [-Wunused-parameter] 126 | PWIZ_API_DECL std::string Reader_mzML::identify(const std::string& filename, const std::string& head) const | ~~~~~~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function ‘virtual void pwiz::msdata::Reader_mzML::read(const std::string&, const std::string&, pwiz::msdata::MSData&, int, const pwiz::msdata::Reader::Config&) const’: /<>/src/pwiz/data/msdata/DefaultReaderList.cpp:133:57: warning: unused parameter ‘head’ [-Wunused-parameter] 133 | const std::string& head, | ~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/data/msdata/DefaultReaderList.cpp:136:52: warning: unused parameter ‘config’ [-Wunused-parameter] 136 | const Config& config) const | ~~~~~~~~~~~~~~^~~~~~ /<>/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function ‘virtual std::string pwiz::msdata::Reader_mzXML::identify(const std::string&, const std::string&) const’: /<>/src/pwiz/data/msdata/DefaultReaderList.cpp:201:69: warning: unused parameter ‘filename’ [-Wunused-parameter] 201 | PWIZ_API_DECL std::string Reader_mzXML::identify(const std::string& filename, const std::string& head) const | ~~~~~~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function ‘virtual void pwiz::msdata::Reader_mzXML::read(const std::string&, const std::string&, pwiz::msdata::MSData&, int, const pwiz::msdata::Reader::Config&) const’: /<>/src/pwiz/data/msdata/DefaultReaderList.cpp:216:58: warning: unused parameter ‘head’ [-Wunused-parameter] 216 | const std::string& head, | ~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/data/msdata/DefaultReaderList.cpp:219:53: warning: unused parameter ‘config’ [-Wunused-parameter] 219 | const Config& config) const | ~~~~~~~~~~~~~~^~~~~~ /<>/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function ‘virtual std::string pwiz::msdata::Reader_MGF::identify(const std::string&, const std::string&) const’: /<>/src/pwiz/data/msdata/DefaultReaderList.cpp:269:59: warning: ‘std::string boost::filesystem::extension(const path&)’ is deprecated: Use path::extension() instead [-Wdeprecated-declarations] 269 | return std::string(((bal::to_lower_copy(bfs::extension(filename)) == ".mgf"))?getType():""); | ~~~~~~~~~~~~~~^~~~~~~~~~ /usr/include/boost/filesystem/convenience.hpp:29:20: note: declared here 29 | inline std::string extension(const path& p) | ^~~~~~~~~ /<>/src/pwiz/data/msdata/DefaultReaderList.cpp:267:86: warning: unused parameter ‘head’ [-Wunused-parameter] 267 | PWIZ_API_DECL std::string Reader_MGF::identify(const string& filename, const string& head) const | ~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function ‘virtual void pwiz::msdata::Reader_MGF::read(const std::string&, const std::string&, pwiz::msdata::MSData&, int, const pwiz::msdata::Reader::Config&) const’: /<>/src/pwiz/data/msdata/DefaultReaderList.cpp:273:51: warning: unused parameter ‘head’ [-Wunused-parameter] 273 | const string& head, | ~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/data/msdata/DefaultReaderList.cpp:276:51: warning: unused parameter ‘config’ [-Wunused-parameter] 276 | const Config& config) const | ~~~~~~~~~~~~~~^~~~~~ /<>/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function ‘virtual void pwiz::msdata::Reader_MGF::read(const std::string&, const std::string&, std::vector >&, const pwiz::msdata::Reader::Config&) const’: /<>/src/pwiz/data/msdata/DefaultReaderList.cpp:296:51: warning: unused parameter ‘config’ [-Wunused-parameter] 296 | const Config& config) const | ~~~~~~~~~~~~~~^~~~~~ /<>/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function ‘virtual std::string pwiz::msdata::Reader_MSn::identify(const std::string&, const std::string&) const’: /<>/src/pwiz/data/msdata/DefaultReaderList.cpp:307:86: warning: unused parameter ‘head’ [-Wunused-parameter] 307 | PWIZ_API_DECL std::string Reader_MSn::identify(const string& filename, const string& head) const | ~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function ‘virtual void pwiz::msdata::Reader_MSn::read(const std::string&, const std::string&, pwiz::msdata::MSData&, int, const pwiz::msdata::Reader::Config&) const’: /<>/src/pwiz/data/msdata/DefaultReaderList.cpp:317:51: warning: unused parameter ‘head’ [-Wunused-parameter] 317 | const string& head, | ~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/data/msdata/DefaultReaderList.cpp:320:51: warning: unused parameter ‘config’ [-Wunused-parameter] 320 | const Config& config) const | ~~~~~~~~~~~~~~^~~~~~ /<>/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function ‘virtual void pwiz::msdata::Reader_MSn::read(const std::string&, const std::string&, std::vector >&, const pwiz::msdata::Reader::Config&) const’: /<>/src/pwiz/data/msdata/DefaultReaderList.cpp:353:51: warning: unused parameter ‘config’ [-Wunused-parameter] 353 | const Config& config) const | ~~~~~~~~~~~~~~^~~~~~ /<>/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function ‘virtual std::string pwiz::msdata::Reader_BTDX::identify(const std::string&, const std::string&) const’: /<>/src/pwiz/data/msdata/DefaultReaderList.cpp:364:63: warning: unused parameter ‘filename’ [-Wunused-parameter] 364 | PWIZ_API_DECL std::string Reader_BTDX::identify(const string& filename, const string& head) const | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function ‘virtual void pwiz::msdata::Reader_BTDX::read(const std::string&, const std::string&, pwiz::msdata::MSData&, int, const pwiz::msdata::Reader::Config&) const’: /<>/src/pwiz/data/msdata/DefaultReaderList.cpp:397:41: warning: ‘boost::filesystem::path boost::filesystem::path::leaf() const’ is deprecated: Use path::filename() instead [-Wdeprecated-declarations] 397 | sourceFile->name = BFS_STRING(p.leaf()); | ~~~~~~^~ /<>/src/pwiz/utility/misc/Filesystem.hpp:64:24: note: in definition of macro ‘BFS_STRING’ 64 | #define BFS_STRING(p) (p).string() | ^ /usr/include/boost/filesystem/path.hpp:1127:10: note: declared here 1127 | path leaf() const { return filename(); } | ^~~~ /<>/src/pwiz/data/msdata/DefaultReaderList.cpp:398:67: warning: ‘boost::filesystem::path boost::filesystem::path::branch_path() const’ is deprecated: Use path::parent_path() instead [-Wdeprecated-declarations] 398 | sourceFile->location = "file:///" + BFS_COMPLETE(p.branch_path()).string(); | ~~~~~~~~~~~~~^~ /usr/include/boost/filesystem/path.hpp:1129:10: note: declared here 1129 | path branch_path() const { return parent_path(); } | ^~~~~~~~~~~ /<>/src/pwiz/data/msdata/DefaultReaderList.cpp:401:46: warning: ‘std::string boost::filesystem::basename(const path&)’ is deprecated: Use path::stem() instead [-Wdeprecated-declarations] 401 | result.id = result.run.id = bfs::basename(filename); | ~~~~~~~~~~~~~^~~~~~~~~~ /usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here 35 | inline std::string basename(const path& p) | ^~~~~~~~ /<>/src/pwiz/data/msdata/DefaultReaderList.cpp:380:52: warning: unused parameter ‘head’ [-Wunused-parameter] 380 | const string& head, | ~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/data/msdata/DefaultReaderList.cpp:383:52: warning: unused parameter ‘config’ [-Wunused-parameter] 383 | const Config& config) const | ~~~~~~~~~~~~~~^~~~~~ /<>/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function ‘virtual void pwiz::msdata::Reader_BTDX::read(const std::string&, const std::string&, std::vector >&, const pwiz::msdata::Reader::Config&) const’: /<>/src/pwiz/data/msdata/DefaultReaderList.cpp:410:52: warning: unused parameter ‘config’ [-Wunused-parameter] 410 | const Config& config) const | ~~~~~~~~~~~~~~^~~~~~ /<>/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function ‘virtual std::string pwiz::msdata::Reader_mz5::identify(const std::string&, const std::string&) const’: /<>/src/pwiz/data/msdata/DefaultReaderList.cpp:429:62: warning: unused parameter ‘filename’ [-Wunused-parameter] 429 | PWIZ_API_DECL std::string Reader_mz5::identify(const string& filename, const string& head) const | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function ‘virtual void pwiz::msdata::Reader_mz5::read(const std::string&, const std::string&, pwiz::msdata::MSData&, int, const pwiz::msdata::Reader::Config&) const’: /<>/src/pwiz/data/msdata/DefaultReaderList.cpp:462:51: warning: unused parameter ‘filename’ [-Wunused-parameter] 462 | PWIZ_API_DECL void Reader_mz5::read(const string& filename, | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/data/msdata/DefaultReaderList.cpp:463:51: warning: unused parameter ‘head’ [-Wunused-parameter] 463 | const string& head, | ~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/data/msdata/DefaultReaderList.cpp:464:45: warning: unused parameter ‘result’ [-Wunused-parameter] 464 | MSData& result, | ~~~~~~~~^~~~~~ /<>/src/pwiz/data/msdata/DefaultReaderList.cpp:465:41: warning: unused parameter ‘runIndex’ [-Wunused-parameter] 465 | int runIndex, | ~~~~^~~~~~~~ /<>/src/pwiz/data/msdata/DefaultReaderList.cpp:466:51: warning: unused parameter ‘config’ [-Wunused-parameter] 466 | const Config& config) const | ~~~~~~~~~~~~~~^~~~~~ /<>/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function ‘virtual void pwiz::msdata::Reader_mz5::read(const std::string&, const std::string&, std::vector >&, const pwiz::msdata::Reader::Config&) const’: /<>/src/pwiz/data/msdata/DefaultReaderList.cpp:488:51: warning: unused parameter ‘config’ [-Wunused-parameter] 488 | const Config& config) const | ~~~~~~~~~~~~~~^~~~~~ /<>/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function ‘virtual void pwiz::msdata::Reader_mzMLb::read(const std::string&, const std::string&, pwiz::msdata::MSData&, int, const pwiz::msdata::Reader::Config&) const’: /<>/src/pwiz/data/msdata/DefaultReaderList.cpp:533:24: warning: unused parameter ‘head’ [-Wunused-parameter] 533 | const std::string& head, | ~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/data/msdata/DefaultReaderList.cpp:536:19: warning: unused parameter ‘config’ [-Wunused-parameter] 536 | const Config& config) const | ~~~~~~~~~~~~~~^~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/13/bits/stl_algobase.h:64, from /usr/aarch64-linux-gnu/include/c++/13/string:51: /usr/aarch64-linux-gnu/include/c++/13/bits/stl_pair.h: In instantiation of ‘constexpr std::pair::type>::__type, typename std::__strip_reference_wrapper::type>::__type> std::make_pair(_T1&&, _T2&&) [with _T1 = double; _T2 = double; typename __strip_reference_wrapper::type>::__type = double; typename decay<_Tp>::type = double; typename __strip_reference_wrapper::type>::__type = double; typename decay<_Tp2>::type = double]’: /<>/src/pwiz/utility/chemistry/MzMobilityWindow.hpp:34:98: required from here /usr/aarch64-linux-gnu/include/c++/13/bits/stl_pair.h:922:5: note: parameter passing for argument of type ‘std::pair’ when C++17 is enabled changed to match C++14 in GCC 10.1 922 | make_pair(_T1&& __x, _T2&& __y) | ^~~~~~~~~ [ 19%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/IO.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -I/<>/obj-aarch64-linux-gnu/src -I/<>/src -I/<>/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/IO.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/IO.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/IO.cpp.o -c /<>/src/pwiz/data/msdata/IO.cpp In file included from /<>/src/pwiz/data/msdata/MSData.hpp:29, from /<>/src/pwiz/data/msdata/IO.hpp:29, from /<>/src/pwiz/data/msdata/IO.cpp:26: /<>/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/13/bits/stl_algobase.h:65, from /usr/aarch64-linux-gnu/include/c++/13/algorithm:60, from /<>/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/aarch64-linux-gnu/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/aarch64-linux-gnu/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /<>/src/pwiz/data/msdata/MSData.hpp: In member function ‘virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const’: /<>/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter ‘msg’ [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /<>/src/pwiz/data/msdata/MSData.hpp: In member function ‘virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const’: /<>/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter ‘msg’ [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ In file included from /<>/src/pwiz/data/msdata/IO.hpp:32: /<>/src/pwiz/utility/misc/IterationListener.hpp: In member function ‘virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)’: /<>/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter ‘updateMessage’ [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ In file included from /<>/src/pwiz/data/msdata/IO.cpp:28: /<>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)’: /<>/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter ‘name’ [-Wunused-parameter] 585 | virtual Status processingInstruction(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter ‘data’ [-Wunused-parameter] 586 | const std::string& data, | ~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter ‘position’ [-Wunused-parameter] 587 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)’: /<>/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter ‘name’ [-Wunused-parameter] 589 | virtual Status startElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter ‘attributes’ [-Wunused-parameter] 590 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter ‘position’ [-Wunused-parameter] 591 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)’: /<>/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter ‘name’ [-Wunused-parameter] 593 | virtual Status endElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter ‘position’ [-Wunused-parameter] 594 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)’: /<>/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter ‘text’ [-Wunused-parameter] 596 | virtual Status characters(const SAXParser::saxstring& text, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter ‘position’ [-Wunused-parameter] 597 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ In file included from /<>/src/pwiz/utility/misc/Filesystem.hpp:34, from /<>/src/pwiz/data/msdata/IO.cpp:29: /<>/src/pwiz/utility/misc/String.hpp: In lambda function: /<>/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] 87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); | ~~~~~~~~~~~~~~~~~~~~~^~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /<>/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /<>/src/pwiz/data/common/ParamTypes.hpp:29, from /<>/src/pwiz/data/msdata/MSData.hpp:30: /usr/include/boost/iterator.hpp: At global scope: /usr/include/boost/iterator.hpp:10:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ /<>/src/pwiz/data/msdata/IO.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerCV::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)’: /<>/src/pwiz/data/msdata/IO.cpp:85:47: warning: unused parameter ‘position’ [-Wunused-parameter] 85 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/data/msdata/IO.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerUserParam::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)’: /<>/src/pwiz/data/msdata/IO.cpp:136:47: warning: unused parameter ‘position’ [-Wunused-parameter] 136 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/data/msdata/IO.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerCVParam::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)’: /<>/src/pwiz/data/msdata/IO.cpp:195:47: warning: unused parameter ‘position’ [-Wunused-parameter] 195 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/data/msdata/IO.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerParamContainer::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)’: /<>/src/pwiz/data/msdata/IO.cpp:267:47: warning: unused parameter ‘position’ [-Wunused-parameter] 267 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/data/msdata/IO.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerFileDescription::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)’: /<>/src/pwiz/data/msdata/IO.cpp:504:51: warning: unused parameter ‘attributes’ [-Wunused-parameter] 504 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /<>/src/pwiz/data/msdata/IO.cpp:505:47: warning: unused parameter ‘position’ [-Wunused-parameter] 505 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/data/msdata/IO.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerComponentList::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)’: /<>/src/pwiz/data/msdata/IO.cpp:697:51: warning: unused parameter ‘attributes’ [-Wunused-parameter] 697 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /<>/src/pwiz/data/msdata/IO.cpp:698:47: warning: unused parameter ‘position’ [-Wunused-parameter] 698 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/data/msdata/IO.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerDataProcessing::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)’: /<>/src/pwiz/data/msdata/IO.cpp:970:47: warning: unused parameter ‘position’ [-Wunused-parameter] 970 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/data/msdata/IO.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerScanSettings::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)’: /<>/src/pwiz/data/msdata/IO.cpp:1083:47: warning: unused parameter ‘position’ [-Wunused-parameter] 1083 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/data/msdata/IO.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerProduct::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)’: /<>/src/pwiz/data/msdata/IO.cpp:1359:51: warning: unused parameter ‘attributes’ [-Wunused-parameter] 1359 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /<>/src/pwiz/data/msdata/IO.cpp:1360:47: warning: unused parameter ‘position’ [-Wunused-parameter] 1360 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/data/msdata/IO.cpp: In function ‘void pwiz::msdata::IO::writeMzMLbExtra(boost::iostreams::stream*, std::string&, size_t&, const std::string&, pwiz::minimxml::XMLWriter&, const BinaryDataArrayType&, const pwiz::msdata::BinaryDataEncoder::Config&) [with BinaryDataArrayType = pwiz::msdata::BinaryDataArray; std::string = std::__cxx11::basic_string; size_t = long unsigned int]’: /<>/src/pwiz/data/msdata/IO.cpp:1693:47: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 1693 | for (int i = 1; i < float_data.size(); i++) | ~~^~~~~~~~~~~~~~~~~~~ /<>/src/pwiz/data/msdata/IO.cpp:1712:51: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 1712 | for (int i = 2; i < float_data.size(); i++) | ~~^~~~~~~~~~~~~~~~~~~ /<>/src/pwiz/data/msdata/IO.cpp:1774:43: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 1774 | for (int i = 1; i < double_data.size(); i++) | ~~^~~~~~~~~~~~~~~~~~~~ /<>/src/pwiz/data/msdata/IO.cpp:1793:47: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 1793 | for (int i = 2; i < double_data.size(); i++) | ~~^~~~~~~~~~~~~~~~~~~~ /<>/src/pwiz/data/msdata/IO.cpp:1627:142: warning: unused parameter ‘writer’ [-Wunused-parameter] 1627 | void writeMzMLbExtra(stream* mzMLb_os, string& dataset, size_t& offset, const string& encoded, XMLWriter& writer, const BinaryDataArray& binaryDataArray, const BinaryDataEncoder::Config& usedConfig) | ~~~~~~~~~~~^~~~~~ /<>/src/pwiz/data/msdata/IO.cpp: In function ‘void pwiz::msdata::IO::writeMzMLbExtra(boost::iostreams::stream*, std::string&, size_t&, const std::string&, pwiz::minimxml::XMLWriter&, const BinaryDataArrayType&, const pwiz::msdata::BinaryDataEncoder::Config&) [with BinaryDataArrayType = pwiz::msdata::IntegerDataArray; std::string = std::__cxx11::basic_string; size_t = long unsigned int]’: /<>/src/pwiz/data/msdata/IO.cpp:1820:143: warning: unused parameter ‘writer’ [-Wunused-parameter] 1820 | void writeMzMLbExtra(stream* mzMLb_os, string& dataset, size_t& offset, const string& encoded, XMLWriter& writer, const IntegerDataArray& binaryDataArray, const BinaryDataEncoder::Config& usedConfig) | ~~~~~~~~~~~^~~~~~ /<>/src/pwiz/data/msdata/IO.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerSpectrum::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)’: /<>/src/pwiz/data/msdata/IO.cpp:2639:35: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] 2639 | else if (version == 1 && name == "acquisitionList" /* mzML 1.0 */ || name == "scanList") | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/pwiz/data/msdata/IO.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerSpectrumListSimple::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)’: /<>/src/pwiz/data/msdata/IO.cpp:2955:47: warning: unused parameter ‘position’ [-Wunused-parameter] 2955 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/data/msdata/IO.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerChromatogramListSimple::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)’: /<>/src/pwiz/data/msdata/IO.cpp:3085:47: warning: unused parameter ‘position’ [-Wunused-parameter] 3085 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/data/msdata/IO.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerMSData::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)’: /<>/src/pwiz/data/msdata/IO.cpp:3415:31: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] 3415 | else if (version == 1 && name == "acquisitionSettings" /* mzML 1.0 */ || | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/pwiz/data/msdata/IO.cpp:3333:47: warning: unused parameter ‘position’ [-Wunused-parameter] 3333 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ [ 20%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Index_mzML.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -I/<>/obj-aarch64-linux-gnu/src -I/<>/src -I/<>/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Index_mzML.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Index_mzML.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Index_mzML.cpp.o -c /<>/src/pwiz/data/msdata/Index_mzML.cpp In file included from /<>/src/pwiz/data/msdata/MSData.hpp:29, from /<>/src/pwiz/data/msdata/Index_mzML.hpp:28, from /<>/src/pwiz/data/msdata/Index_mzML.cpp:24: /<>/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/13/bits/stl_algobase.h:65, from /usr/aarch64-linux-gnu/include/c++/13/algorithm:60, from /<>/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/aarch64-linux-gnu/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/aarch64-linux-gnu/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /<>/src/pwiz/data/msdata/MSData.hpp: In member function ‘virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const’: /<>/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter ‘msg’ [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /<>/src/pwiz/data/msdata/MSData.hpp: In member function ‘virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const’: /<>/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter ‘msg’ [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /<>/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /<>/src/pwiz/data/common/ParamTypes.hpp:29, from /<>/src/pwiz/data/msdata/MSData.hpp:30: /usr/include/boost/iterator.hpp: At global scope: /usr/include/boost/iterator.hpp:10:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/src/pwiz/utility/misc/Std.hpp:31, from /<>/src/pwiz/data/msdata/Index_mzML.cpp:25: /<>/src/pwiz/utility/misc/String.hpp: In lambda function: /<>/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] 87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); | ~~~~~~~~~~~~~~~~~~~~~^~~ In file included from /<>/src/pwiz/data/msdata/Index_mzML.cpp:26: /<>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)’: /<>/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter ‘name’ [-Wunused-parameter] 585 | virtual Status processingInstruction(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter ‘data’ [-Wunused-parameter] 586 | const std::string& data, | ~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter ‘position’ [-Wunused-parameter] 587 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)’: /<>/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter ‘name’ [-Wunused-parameter] 589 | virtual Status startElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter ‘attributes’ [-Wunused-parameter] 590 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter ‘position’ [-Wunused-parameter] 591 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)’: /<>/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter ‘name’ [-Wunused-parameter] 593 | virtual Status endElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter ‘position’ [-Wunused-parameter] 594 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)’: /<>/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter ‘text’ [-Wunused-parameter] 596 | virtual Status characters(const SAXParser::saxstring& text, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter ‘position’ [-Wunused-parameter] 597 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ In file included from /<>/src/pwiz/data/msdata/IO.hpp:32, from /<>/src/pwiz/data/msdata/Index_mzML.cpp:28: /<>/src/pwiz/utility/misc/IterationListener.hpp: In member function ‘virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)’: /<>/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter ‘updateMessage’ [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /<>/src/pwiz/data/msdata/Index_mzML.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexListOffset::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)’: /<>/src/pwiz/data/msdata/Index_mzML.cpp:86:51: warning: unused parameter ‘attributes’ [-Wunused-parameter] 86 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /<>/src/pwiz/data/msdata/Index_mzML.cpp:87:47: warning: unused parameter ‘position’ [-Wunused-parameter] 87 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/data/msdata/Index_mzML.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexListOffset::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)’: /<>/src/pwiz/data/msdata/Index_mzML.cpp:95:45: warning: unused parameter ‘position’ [-Wunused-parameter] 95 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/data/msdata/Index_mzML.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerOffset::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)’: /<>/src/pwiz/data/msdata/Index_mzML.cpp:120:47: warning: unused parameter ‘position’ [-Wunused-parameter] 120 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/data/msdata/Index_mzML.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerOffset::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)’: /<>/src/pwiz/data/msdata/Index_mzML.cpp:165:45: warning: unused parameter ‘position’ [-Wunused-parameter] 165 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/data/msdata/Index_mzML.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexList::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)’: /<>/src/pwiz/data/msdata/Index_mzML.cpp:201:47: warning: unused parameter ‘position’ [-Wunused-parameter] 201 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ [ 21%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/MSData.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -I/<>/obj-aarch64-linux-gnu/src -I/<>/src -I/<>/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/MSData.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/MSData.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/MSData.cpp.o -c /<>/src/pwiz/data/msdata/MSData.cpp In file included from /<>/src/pwiz/data/msdata/MSData.hpp:29, from /<>/src/pwiz/data/msdata/MSData.cpp:25: /<>/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/13/bits/stl_algobase.h:65, from /usr/aarch64-linux-gnu/include/c++/13/algorithm:60, from /<>/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/aarch64-linux-gnu/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/aarch64-linux-gnu/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /<>/src/pwiz/data/msdata/MSData.hpp: In member function ‘virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const’: /<>/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter ‘msg’ [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /<>/src/pwiz/data/msdata/MSData.hpp: In member function ‘virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const’: /<>/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter ‘msg’ [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /<>/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /<>/src/pwiz/data/common/ParamTypes.hpp:29, from /<>/src/pwiz/data/msdata/MSData.hpp:30: /usr/include/boost/iterator.hpp: At global scope: /usr/include/boost/iterator.hpp:10:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/src/pwiz/utility/misc/Std.hpp:31, from /<>/src/pwiz/data/msdata/MSData.cpp:26: /<>/src/pwiz/utility/misc/String.hpp: In lambda function: /<>/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] 87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); | ~~~~~~~~~~~~~~~~~~~~~^~~ /<>/src/pwiz/data/msdata/MSData.cpp: In member function ‘virtual size_t pwiz::msdata::SpectrumList::findAbbreviated(const std::string&, char) const’: /<>/src/pwiz/data/msdata/MSData.cpp:1121:21: warning: comparison of unsigned expression in ‘>= 0’ is always true [-Wtype-limits] 1121 | if ((result >= 0 && result < size()) || s == 0) | ~~~~~~~^~~~ /<>/src/pwiz/data/msdata/MSData.cpp: In member function ‘virtual pwiz::msdata::SpectrumPtr pwiz::msdata::SpectrumListSimple::spectrum(size_t, bool) const’: /<>/src/pwiz/data/msdata/MSData.cpp:1232:75: warning: unused parameter ‘getBinaryData’ [-Wunused-parameter] 1232 | PWIZ_API_DECL SpectrumPtr SpectrumListSimple::spectrum(size_t index, bool getBinaryData) const | ~~~~~^~~~~~~~~~~~~ /<>/src/pwiz/data/msdata/MSData.cpp: In member function ‘virtual pwiz::msdata::ChromatogramPtr pwiz::msdata::ChromatogramListSimple::chromatogram(size_t, bool) const’: /<>/src/pwiz/data/msdata/MSData.cpp:1299:87: warning: unused parameter ‘getBinaryData’ [-Wunused-parameter] 1299 | PWIZ_API_DECL ChromatogramPtr ChromatogramListSimple::chromatogram(size_t index, bool getBinaryData) const | ~~~~~^~~~~~~~~~~~~ /<>/src/pwiz/data/msdata/MSData.cpp: In function ‘std::string pwiz::msdata::id::translateNativeIDToScanNumber(pwiz::cv::CVID, const std::string&)’: /<>/src/pwiz/data/msdata/MSData.cpp:582:13: warning: this statement may fall through [-Wimplicit-fallthrough=] 582 | if (id.find("controllerType=0 controllerNumber=1") != 0) | ^~ /<>/src/pwiz/data/msdata/MSData.cpp:587:9: note: here 587 | case MS_Bruker_Agilent_YEP_nativeID_format: | ^~~~ [ 23%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/MSDataFile.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -I/<>/obj-aarch64-linux-gnu/src -I/<>/src -I/<>/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/MSDataFile.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/MSDataFile.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/MSDataFile.cpp.o -c /<>/src/pwiz/data/msdata/MSDataFile.cpp In file included from /<>/src/pwiz/data/msdata/MSData.hpp:29, from /<>/src/pwiz/data/msdata/MSDataFile.hpp:29, from /<>/src/pwiz/data/msdata/MSDataFile.cpp:26: /<>/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/13/bits/stl_algobase.h:65, from /usr/aarch64-linux-gnu/include/c++/13/algorithm:60, from /<>/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/aarch64-linux-gnu/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/aarch64-linux-gnu/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /<>/src/pwiz/data/msdata/MSData.hpp: In member function ‘virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const’: /<>/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter ‘msg’ [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /<>/src/pwiz/data/msdata/MSData.hpp: In member function ‘virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const’: /<>/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter ‘msg’ [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ In file included from /<>/src/pwiz/data/msdata/Reader.hpp:28, from /<>/src/pwiz/data/msdata/MSDataFile.hpp:30: /<>/src/pwiz/utility/misc/IterationListener.hpp: In member function ‘virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)’: /<>/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter ‘updateMessage’ [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ In file included from /<>/src/pwiz/data/msdata/Reader.hpp:29: /<>/src/pwiz/utility/chemistry/MzMobilityWindow.hpp: In member function ‘bool pwiz::chemistry::MzMobilityWindow::mobilityValueInBounds(double) const’: /<>/src/pwiz/utility/chemistry/MzMobilityWindow.hpp:40:59: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] 40 | mobilityBounds.get().first < mobilityValue && mobilityValue < mobilityBounds.get().second; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/src/pwiz/data/msdata/MSDataFile.cpp:39: /<>/src/pwiz/data/msdata/DefaultReaderList.hpp: In member function ‘virtual std::string pwiz::msdata::Reader_MS2::identify(const std::string&, const std::string&) const’: /<>/src/pwiz/data/msdata/DefaultReaderList.hpp:98:53: warning: unused parameter ‘filename’ [-Wunused-parameter] 98 | virtual std::string identify(const std::string& filename, const std::string& head) const { return ""; } | ~~~~~~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/data/msdata/DefaultReaderList.hpp:98:82: warning: unused parameter ‘head’ [-Wunused-parameter] 98 | virtual std::string identify(const std::string& filename, const std::string& head) const { return ""; } | ~~~~~~~~~~~~~~~~~~~^~~~ In file included from /<>/src/pwiz/utility/misc/Filesystem.hpp:34, from /<>/src/pwiz/data/msdata/MSDataFile.cpp:40: /<>/src/pwiz/utility/misc/String.hpp: In lambda function: /<>/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] 87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); | ~~~~~~~~~~~~~~~~~~~~~^~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /<>/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /<>/src/pwiz/data/common/ParamTypes.hpp:29, from /<>/src/pwiz/data/msdata/MSData.hpp:30: /usr/include/boost/iterator.hpp: At global scope: /usr/include/boost/iterator.hpp:10:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/13/bits/stl_algobase.h:64: /usr/aarch64-linux-gnu/include/c++/13/bits/stl_pair.h: In instantiation of ‘constexpr std::pair::type>::__type, typename std::__strip_reference_wrapper::type>::__type> std::make_pair(_T1&&, _T2&&) [with _T1 = double; _T2 = double; typename __strip_reference_wrapper::type>::__type = double; typename decay<_Tp>::type = double; typename __strip_reference_wrapper::type>::__type = double; typename decay<_Tp2>::type = double]’: /<>/src/pwiz/utility/chemistry/MzMobilityWindow.hpp:34:98: required from here /usr/aarch64-linux-gnu/include/c++/13/bits/stl_pair.h:922:5: note: parameter passing for argument of type ‘std::pair’ when C++17 is enabled changed to match C++14 in GCC 10.1 922 | make_pair(_T1&& __x, _T2&& __y) | ^~~~~~~~~ [ 24%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Reader.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -I/<>/obj-aarch64-linux-gnu/src -I/<>/src -I/<>/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Reader.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Reader.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Reader.cpp.o -c /<>/src/pwiz/data/msdata/Reader.cpp In file included from /<>/src/pwiz/data/msdata/Reader.hpp:28, from /<>/src/pwiz/data/msdata/Reader.cpp:26: /<>/src/pwiz/utility/misc/IterationListener.hpp: In member function ‘virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)’: /<>/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter ‘updateMessage’ [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ In file included from /<>/src/pwiz/data/msdata/Reader.hpp:29: /<>/src/pwiz/utility/chemistry/MzMobilityWindow.hpp: In member function ‘bool pwiz::chemistry::MzMobilityWindow::mobilityValueInBounds(double) const’: /<>/src/pwiz/utility/chemistry/MzMobilityWindow.hpp:40:59: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] 40 | mobilityBounds.get().first < mobilityValue && mobilityValue < mobilityBounds.get().second; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/src/pwiz/data/msdata/MSData.hpp:29, from /<>/src/pwiz/data/msdata/Reader.hpp:30: /<>/src/pwiz/utility/misc/BinaryData.hpp: At global scope: /<>/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/13/bits/stl_construct.h:61, from /usr/aarch64-linux-gnu/include/c++/13/bits/stl_tempbuf.h:61, from /usr/aarch64-linux-gnu/include/c++/13/memory:66, from /usr/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35, from /usr/include/boost/smart_ptr/detail/shared_count.hpp:27, from /usr/include/boost/smart_ptr/shared_ptr.hpp:18, from /usr/include/boost/shared_ptr.hpp:17, from /<>/src/pwiz/utility/misc/IterationListener.hpp:29: /usr/aarch64-linux-gnu/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/aarch64-linux-gnu/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /<>/src/pwiz/data/msdata/MSData.hpp: In member function ‘virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const’: /<>/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter ‘msg’ [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /<>/src/pwiz/data/msdata/MSData.hpp: In member function ‘virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const’: /<>/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter ‘msg’ [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ In file included from /<>/src/pwiz/utility/misc/Filesystem.hpp:34, from /<>/src/pwiz/data/msdata/Reader.cpp:27: /<>/src/pwiz/utility/misc/String.hpp: In lambda function: /<>/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] 87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); | ~~~~~~~~~~~~~~~~~~~~~^~~ In file included from /usr/include/boost/smart_ptr/detail/requires_cxx11.hpp:9, from /usr/include/boost/smart_ptr/shared_ptr.hpp:17: /usr/include/boost/iterator.hpp: At global scope: /usr/include/boost/iterator.hpp:10:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ /<>/src/pwiz/data/msdata/Reader.cpp: In member function ‘virtual void pwiz::msdata::Reader::readIds(const std::string&, const std::string&, std::vector >&, const Config&) const’: /<>/src/pwiz/data/msdata/Reader.cpp:80:119: warning: unused parameter ‘config’ [-Wunused-parameter] 80 | PWIZ_API_DECL void Reader::readIds(const string& filename, const string& head, vector& results, const Config& config) const | ~~~~~~~~~~~~~~^~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/13/bits/stl_tempbuf.h:62: /usr/aarch64-linux-gnu/include/c++/13/bits/stl_pair.h: In instantiation of ‘constexpr std::pair::type>::__type, typename std::__strip_reference_wrapper::type>::__type> std::make_pair(_T1&&, _T2&&) [with _T1 = double; _T2 = double; typename __strip_reference_wrapper::type>::__type = double; typename decay<_Tp>::type = double; typename __strip_reference_wrapper::type>::__type = double; typename decay<_Tp2>::type = double]’: /<>/src/pwiz/utility/chemistry/MzMobilityWindow.hpp:34:98: required from here /usr/aarch64-linux-gnu/include/c++/13/bits/stl_pair.h:922:5: note: parameter passing for argument of type ‘std::pair’ when C++17 is enabled changed to match C++14 in GCC 10.1 922 | make_pair(_T1&& __x, _T2&& __y) | ^~~~~~~~~ [ 25%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_MGF.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -I/<>/obj-aarch64-linux-gnu/src -I/<>/src -I/<>/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_MGF.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_MGF.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_MGF.cpp.o -c /<>/src/pwiz/data/msdata/Serializer_MGF.cpp In file included from /<>/src/pwiz/data/msdata/MSData.hpp:29, from /<>/src/pwiz/data/msdata/Serializer_MGF.hpp:27, from /<>/src/pwiz/data/msdata/Serializer_MGF.cpp:25: /<>/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/13/bits/stl_algobase.h:65, from /usr/aarch64-linux-gnu/include/c++/13/algorithm:60, from /<>/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/aarch64-linux-gnu/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/aarch64-linux-gnu/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /<>/src/pwiz/data/msdata/MSData.hpp: In member function ‘virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const’: /<>/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter ‘msg’ [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /<>/src/pwiz/data/msdata/MSData.hpp: In member function ‘virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const’: /<>/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter ‘msg’ [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ In file included from /<>/src/pwiz/data/msdata/Serializer_MGF.hpp:29: /<>/src/pwiz/utility/misc/IterationListener.hpp: In member function ‘virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)’: /<>/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter ‘updateMessage’ [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ In file included from /<>/src/pwiz/utility/misc/Filesystem.hpp:34, from /<>/src/pwiz/data/msdata/Serializer_MGF.cpp:27: /<>/src/pwiz/utility/misc/String.hpp: In lambda function: /<>/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] 87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); | ~~~~~~~~~~~~~~~~~~~~~^~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /<>/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /<>/src/pwiz/data/common/ParamTypes.hpp:29, from /<>/src/pwiz/data/msdata/MSData.hpp:30: /usr/include/boost/iterator.hpp: At global scope: /usr/include/boost/iterator.hpp:10:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ /<>/src/pwiz/data/msdata/Serializer_MGF.cpp: In member function ‘void pwiz::msdata::Serializer_MGF::Impl::write(std::ostream&, const pwiz::msdata::MSData&, const pwiz::util::IterationListenerRegistry*, bool, bool) const’: /<>/src/pwiz/data/msdata/Serializer_MGF.cpp:73:61: warning: ‘std::string boost::filesystem::basename(const path&)’ is deprecated: Use path::stem() instead [-Wdeprecated-declarations] 73 | string thermoBasename = titleIsThermoDTA ? bfs::basename(thermoFilename) : ""; | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ In file included from /<>/src/pwiz/utility/misc/Filesystem.hpp:37: /usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here 35 | inline std::string basename(const path& p) | ^~~~~~~~ [ 26%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_MSn.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -I/<>/obj-aarch64-linux-gnu/src -I/<>/src -I/<>/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_MSn.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_MSn.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_MSn.cpp.o -c /<>/src/pwiz/data/msdata/Serializer_MSn.cpp In file included from /<>/src/pwiz/data/msdata/MSData.hpp:29, from /<>/src/pwiz/data/msdata/Serializer_MSn.hpp:26, from /<>/src/pwiz/data/msdata/Serializer_MSn.cpp:25: /<>/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/13/bits/stl_algobase.h:65, from /usr/aarch64-linux-gnu/include/c++/13/algorithm:60, from /<>/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/aarch64-linux-gnu/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/aarch64-linux-gnu/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /<>/src/pwiz/data/msdata/MSData.hpp: In member function ‘virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const’: /<>/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter ‘msg’ [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /<>/src/pwiz/data/msdata/MSData.hpp: In member function ‘virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const’: /<>/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter ‘msg’ [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ In file included from /<>/src/pwiz/data/msdata/Serializer_MSn.hpp:28: /<>/src/pwiz/utility/misc/IterationListener.hpp: In member function ‘virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)’: /<>/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter ‘updateMessage’ [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ In file included from /<>/src/pwiz/utility/misc/Filesystem.hpp:34, from /<>/src/pwiz/data/msdata/Serializer_MSn.cpp:28: /<>/src/pwiz/utility/misc/String.hpp: In lambda function: /<>/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] 87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); | ~~~~~~~~~~~~~~~~~~~~~^~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /<>/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /<>/src/pwiz/data/common/ParamTypes.hpp:29, from /<>/src/pwiz/data/msdata/MSData.hpp:30: /usr/include/boost/iterator.hpp: At global scope: /usr/include/boost/iterator.hpp:10:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ /<>/src/pwiz/data/msdata/Serializer_MSn.cpp: In member function ‘void pwiz::msdata::Serializer_MSn::write(std::ostream&, const pwiz::msdata::MSData&, const pwiz::util::IterationListenerRegistry*, bool, bool) const’: /<>/src/pwiz/data/msdata/Serializer_MSn.cpp:552:10: warning: unused parameter ‘useWorkerThreads’ [-Wunused-parameter] 552 | bool useWorkerThreads, bool continueOnError) const | ~~~~~^~~~~~~~~~~~~~~~ /<>/src/pwiz/data/msdata/Serializer_MSn.cpp:552:33: warning: unused parameter ‘continueOnError’ [-Wunused-parameter] 552 | bool useWorkerThreads, bool continueOnError) const | ~~~~~^~~~~~~~~~~~~~~ [ 28%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_mzML.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -I/<>/obj-aarch64-linux-gnu/src -I/<>/src -I/<>/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_mzML.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_mzML.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_mzML.cpp.o -c /<>/src/pwiz/data/msdata/Serializer_mzML.cpp In file included from /<>/src/pwiz/data/msdata/MSData.hpp:29, from /<>/src/pwiz/data/msdata/Serializer_mzML.hpp:29, from /<>/src/pwiz/data/msdata/Serializer_mzML.cpp:26: /<>/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/13/bits/stl_algobase.h:65, from /usr/aarch64-linux-gnu/include/c++/13/algorithm:60, from /<>/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/aarch64-linux-gnu/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/aarch64-linux-gnu/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /<>/src/pwiz/data/msdata/MSData.hpp: In member function ‘virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const’: /<>/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter ‘msg’ [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /<>/src/pwiz/data/msdata/MSData.hpp: In member function ‘virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const’: /<>/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter ‘msg’ [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ In file included from /<>/src/pwiz/data/msdata/Serializer_mzML.hpp:31: /<>/src/pwiz/utility/misc/IterationListener.hpp: In member function ‘virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)’: /<>/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter ‘updateMessage’ [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ In file included from /<>/src/pwiz/data/msdata/Serializer_mzML.cpp:32: /<>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)’: /<>/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter ‘name’ [-Wunused-parameter] 585 | virtual Status processingInstruction(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter ‘data’ [-Wunused-parameter] 586 | const std::string& data, | ~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter ‘position’ [-Wunused-parameter] 587 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)’: /<>/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter ‘name’ [-Wunused-parameter] 589 | virtual Status startElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter ‘attributes’ [-Wunused-parameter] 590 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter ‘position’ [-Wunused-parameter] 591 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)’: /<>/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter ‘name’ [-Wunused-parameter] 593 | virtual Status endElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter ‘position’ [-Wunused-parameter] 594 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)’: /<>/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter ‘text’ [-Wunused-parameter] 596 | virtual Status characters(const SAXParser::saxstring& text, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter ‘position’ [-Wunused-parameter] 597 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /<>/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /<>/src/pwiz/data/common/ParamTypes.hpp:29, from /<>/src/pwiz/data/msdata/MSData.hpp:30: /usr/include/boost/iterator.hpp: At global scope: /usr/include/boost/iterator.hpp:10:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/src/pwiz/utility/misc/Std.hpp:31, from /<>/src/pwiz/data/msdata/Serializer_mzML.cpp:33: /<>/src/pwiz/utility/misc/String.hpp: In lambda function: /<>/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] 87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); | ~~~~~~~~~~~~~~~~~~~~~^~~ /<>/src/pwiz/data/msdata/Serializer_mzML.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::HandlerIndexedMZML::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)’: /<>/src/pwiz/data/msdata/Serializer_mzML.cpp:278:51: warning: unused parameter ‘attributes’ [-Wunused-parameter] 278 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /<>/src/pwiz/data/msdata/Serializer_mzML.cpp:279:47: warning: unused parameter ‘position’ [-Wunused-parameter] 279 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ [ 29%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_mzXML.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -I/<>/obj-aarch64-linux-gnu/src -I/<>/src -I/<>/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_mzXML.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_mzXML.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_mzXML.cpp.o -c /<>/src/pwiz/data/msdata/Serializer_mzXML.cpp In file included from /<>/src/pwiz/data/msdata/MSData.hpp:29, from /<>/src/pwiz/data/msdata/Serializer_mzXML.hpp:29, from /<>/src/pwiz/data/msdata/Serializer_mzXML.cpp:25: /<>/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/13/bits/stl_algobase.h:65, from /usr/aarch64-linux-gnu/include/c++/13/algorithm:60, from /<>/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/aarch64-linux-gnu/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/aarch64-linux-gnu/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /<>/src/pwiz/data/msdata/MSData.hpp: In member function ‘virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const’: /<>/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter ‘msg’ [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /<>/src/pwiz/data/msdata/MSData.hpp: In member function ‘virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const’: /<>/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter ‘msg’ [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ In file included from /<>/src/pwiz/data/msdata/Serializer_mzXML.hpp:31: /<>/src/pwiz/utility/misc/IterationListener.hpp: In member function ‘virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)’: /<>/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter ‘updateMessage’ [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ In file included from /<>/src/pwiz/data/msdata/Serializer_mzXML.cpp:32: /<>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)’: /<>/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter ‘name’ [-Wunused-parameter] 585 | virtual Status processingInstruction(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter ‘data’ [-Wunused-parameter] 586 | const std::string& data, | ~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter ‘position’ [-Wunused-parameter] 587 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)’: /<>/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter ‘name’ [-Wunused-parameter] 589 | virtual Status startElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter ‘attributes’ [-Wunused-parameter] 590 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter ‘position’ [-Wunused-parameter] 591 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)’: /<>/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter ‘name’ [-Wunused-parameter] 593 | virtual Status endElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter ‘position’ [-Wunused-parameter] 594 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)’: /<>/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter ‘text’ [-Wunused-parameter] 596 | virtual Status characters(const SAXParser::saxstring& text, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter ‘position’ [-Wunused-parameter] 597 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ In file included from /<>/src/pwiz/utility/misc/Filesystem.hpp:34, from /<>/src/pwiz/data/msdata/Serializer_mzXML.cpp:33: /<>/src/pwiz/utility/misc/String.hpp: In lambda function: /<>/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] 87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); | ~~~~~~~~~~~~~~~~~~~~~^~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /<>/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /<>/src/pwiz/data/common/ParamTypes.hpp:29, from /<>/src/pwiz/data/msdata/MSData.hpp:30: /usr/include/boost/iterator.hpp: At global scope: /usr/include/boost/iterator.hpp:10:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ /<>/src/pwiz/data/msdata/Serializer_mzXML.cpp: In function ‘std::string pwiz::msdata::{anonymous}::translate_SourceFileTypeToRunID(const pwiz::msdata::SourceFile&, pwiz::cv::CVID)’: /<>/src/pwiz/data/msdata/Serializer_mzXML.cpp:149:61: warning: ‘std::string boost::filesystem::extension(const path&)’ is deprecated: Use path::extension() instead [-Wdeprecated-declarations] 149 | string nameExtension = bal::to_lower_copy(bfs::extension(sf.name)); | ~~~~~~~~~~~~~~^~~~~~~~~ In file included from /<>/src/pwiz/utility/misc/Filesystem.hpp:37: /usr/include/boost/filesystem/convenience.hpp:29:20: note: declared here 29 | inline std::string extension(const path& p) | ^~~~~~~~~ /<>/src/pwiz/data/msdata/Serializer_mzXML.cpp:150:65: warning: ‘std::string boost::filesystem::extension(const path&)’ is deprecated: Use path::extension() instead [-Wdeprecated-declarations] 150 | string locationExtension = bal::to_lower_copy(bfs::extension(sf.location)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /usr/include/boost/filesystem/convenience.hpp:29:20: note: declared here 29 | inline std::string extension(const path& p) | ^~~~~~~~~ /<>/src/pwiz/data/msdata/Serializer_mzXML.cpp:157:37: warning: ‘std::string boost::filesystem::basename(const path&)’ is deprecated: Use path::stem() instead [-Wdeprecated-declarations] 157 | return bfs::basename(sf.name); | ~~~~~~~~~~~~~^~~~~~~~~ /usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here 35 | inline std::string basename(const path& p) | ^~~~~~~~ /<>/src/pwiz/data/msdata/Serializer_mzXML.cpp:164:65: warning: ‘boost::filesystem::path boost::filesystem::path::leaf() const’ is deprecated: Use path::filename() instead [-Wdeprecated-declarations] 164 | return bfs::basename(bfs::path(sf.location).leaf()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/boost/filesystem/operations.hpp:20, from /<>/src/pwiz/utility/misc/Filesystem.hpp:36: /usr/include/boost/filesystem/path.hpp:1127:10: note: declared here 1127 | path leaf() const { return filename(); } | ^~~~ /<>/src/pwiz/data/msdata/Serializer_mzXML.cpp:164:37: warning: ‘std::string boost::filesystem::basename(const path&)’ is deprecated: Use path::stem() instead [-Wdeprecated-declarations] 164 | return bfs::basename(bfs::path(sf.location).leaf()); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here 35 | inline std::string basename(const path& p) | ^~~~~~~~ /<>/src/pwiz/data/msdata/Serializer_mzXML.cpp:166:37: warning: ‘std::string boost::filesystem::basename(const path&)’ is deprecated: Use path::stem() instead [-Wdeprecated-declarations] 166 | return bfs::basename(sf.name); | ~~~~~~~~~~~~~^~~~~~~~~ /usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here 35 | inline std::string basename(const path& p) | ^~~~~~~~ /<>/src/pwiz/data/msdata/Serializer_mzXML.cpp:172:65: warning: ‘boost::filesystem::path boost::filesystem::path::leaf() const’ is deprecated: Use path::filename() instead [-Wdeprecated-declarations] 172 | return bfs::basename(bfs::path(sf.location).leaf()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /usr/include/boost/filesystem/path.hpp:1127:10: note: declared here 1127 | path leaf() const { return filename(); } | ^~~~ /<>/src/pwiz/data/msdata/Serializer_mzXML.cpp:172:37: warning: ‘std::string boost::filesystem::basename(const path&)’ is deprecated: Use path::stem() instead [-Wdeprecated-declarations] 172 | return bfs::basename(bfs::path(sf.location).leaf()); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here 35 | inline std::string basename(const path& p) | ^~~~~~~~ /<>/src/pwiz/data/msdata/Serializer_mzXML.cpp:178:65: warning: ‘boost::filesystem::path boost::filesystem::path::leaf() const’ is deprecated: Use path::filename() instead [-Wdeprecated-declarations] 178 | return bfs::basename(bfs::path(sf.location).leaf()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /usr/include/boost/filesystem/path.hpp:1127:10: note: declared here 1127 | path leaf() const { return filename(); } | ^~~~ /<>/src/pwiz/data/msdata/Serializer_mzXML.cpp:178:37: warning: ‘std::string boost::filesystem::basename(const path&)’ is deprecated: Use path::stem() instead [-Wdeprecated-declarations] 178 | return bfs::basename(bfs::path(sf.location).leaf()); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here 35 | inline std::string basename(const path& p) | ^~~~~~~~ /<>/src/pwiz/data/msdata/Serializer_mzXML.cpp:184:65: warning: ‘boost::filesystem::path boost::filesystem::path::leaf() const’ is deprecated: Use path::filename() instead [-Wdeprecated-declarations] 184 | return bfs::basename(bfs::path(sf.location).leaf()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /usr/include/boost/filesystem/path.hpp:1127:10: note: declared here 1127 | path leaf() const { return filename(); } | ^~~~ /<>/src/pwiz/data/msdata/Serializer_mzXML.cpp:184:37: warning: ‘std::string boost::filesystem::basename(const path&)’ is deprecated: Use path::stem() instead [-Wdeprecated-declarations] 184 | return bfs::basename(bfs::path(sf.location).leaf()); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here 35 | inline std::string basename(const path& p) | ^~~~~~~~ /<>/src/pwiz/data/msdata/Serializer_mzXML.cpp:190:65: warning: ‘boost::filesystem::path boost::filesystem::path::leaf() const’ is deprecated: Use path::filename() instead [-Wdeprecated-declarations] 190 | return bfs::basename(bfs::path(sf.location).leaf()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /usr/include/boost/filesystem/path.hpp:1127:10: note: declared here 1127 | path leaf() const { return filename(); } | ^~~~ /<>/src/pwiz/data/msdata/Serializer_mzXML.cpp:190:37: warning: ‘std::string boost::filesystem::basename(const path&)’ is deprecated: Use path::stem() instead [-Wdeprecated-declarations] 190 | return bfs::basename(bfs::path(sf.location).leaf()); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here 35 | inline std::string basename(const path& p) | ^~~~~~~~ /<>/src/pwiz/data/msdata/Serializer_mzXML.cpp:195:44: warning: ‘boost::filesystem::path boost::filesystem::path::leaf() const’ is deprecated: Use path::filename() instead [-Wdeprecated-declarations] 195 | if (bfs::path(sf.location).leaf() == "AcqData" && | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /usr/include/boost/filesystem/path.hpp:1127:10: note: declared here 1127 | path leaf() const { return filename(); } | ^~~~ /<>/src/pwiz/data/msdata/Serializer_mzXML.cpp:199:79: warning: ‘boost::filesystem::path boost::filesystem::path::leaf() const’ is deprecated: Use path::filename() instead [-Wdeprecated-declarations] 199 | return bfs::basename(bfs::path(sf.location).parent_path().leaf()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /usr/include/boost/filesystem/path.hpp:1127:10: note: declared here 1127 | path leaf() const { return filename(); } | ^~~~ /<>/src/pwiz/data/msdata/Serializer_mzXML.cpp:199:37: warning: ‘std::string boost::filesystem::basename(const path&)’ is deprecated: Use path::stem() instead [-Wdeprecated-declarations] 199 | return bfs::basename(bfs::path(sf.location).parent_path().leaf()); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here 35 | inline std::string basename(const path& p) | ^~~~~~~~ /<>/src/pwiz/data/msdata/Serializer_mzXML.cpp:207:37: warning: ‘std::string boost::filesystem::basename(const path&)’ is deprecated: Use path::stem() instead [-Wdeprecated-declarations] 207 | return bfs::basename(sf.name); | ~~~~~~~~~~~~~^~~~~~~~~ /usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here 35 | inline std::string basename(const path& p) | ^~~~~~~~ /<>/src/pwiz/data/msdata/Serializer_mzXML.cpp:216:37: warning: ‘std::string boost::filesystem::basename(const path&)’ is deprecated: Use path::stem() instead [-Wdeprecated-declarations] 216 | return bfs::basename(sf.name); | ~~~~~~~~~~~~~^~~~~~~~~ /usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here 35 | inline std::string basename(const path& p) | ^~~~~~~~ /<>/src/pwiz/data/msdata/Serializer_mzXML.cpp:222:37: warning: ‘std::string boost::filesystem::basename(const path&)’ is deprecated: Use path::stem() instead [-Wdeprecated-declarations] 222 | return bfs::basename(sf.name); | ~~~~~~~~~~~~~^~~~~~~~~ /usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here 35 | inline std::string basename(const path& p) | ^~~~~~~~ /<>/src/pwiz/data/msdata/Serializer_mzXML.cpp:228:37: warning: ‘std::string boost::filesystem::basename(const path&)’ is deprecated: Use path::stem() instead [-Wdeprecated-declarations] 228 | return bfs::basename(sf.name); | ~~~~~~~~~~~~~^~~~~~~~~ /usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here 35 | inline std::string basename(const path& p) | ^~~~~~~~ /<>/src/pwiz/data/msdata/Serializer_mzXML.cpp: In function ‘std::vector pwiz::msdata::{anonymous}::getPrecursorInfo(const pwiz::msdata::Spectrum&, pwiz::msdata::SpectrumListPtr, pwiz::cv::CVID)’: /<>/src/pwiz/data/msdata/Serializer_mzXML.cpp:454:62: warning: unused parameter ‘spectrumListPtr’ [-Wunused-parameter] 454 | const SpectrumListPtr spectrumListPtr, | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/src/pwiz/data/msdata/Serializer_mzXML.cpp: In function ‘pwiz::cv::CVID pwiz::msdata::{anonymous}::translate_parentFilenameToSourceFileType(const std::string&)’: /<>/src/pwiz/data/msdata/Serializer_mzXML.cpp:878:61: warning: ‘std::string boost::filesystem::extension(const path&)’ is deprecated: Use path::extension() instead [-Wdeprecated-declarations] 878 | string fileExtension = bal::to_lower_copy(bfs::extension(name)); | ~~~~~~~~~~~~~~^~~~~~ /usr/include/boost/filesystem/convenience.hpp:29:20: note: declared here 29 | inline std::string extension(const path& p) | ^~~~~~~~~ /<>/src/pwiz/data/msdata/Serializer_mzXML.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerScanFileContent::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)’: /<>/src/pwiz/data/msdata/Serializer_mzXML.cpp:1027:47: warning: unused parameter ‘position’ [-Wunused-parameter] 1027 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/data/msdata/Serializer_mzXML.cpp: In function ‘void pwiz::msdata::{anonymous}::fillInMetadata(pwiz::msdata::MSData&)’: /<>/src/pwiz/data/msdata/Serializer_mzXML.cpp:1139:65: warning: ‘boost::filesystem::path boost::filesystem::path::leaf() const’ is deprecated: Use path::filename() instead [-Wdeprecated-declarations] 1139 | msd.id = msd.run.id = BFS_STRING(bfs::path(lcp).leaf()); | ~~~~~~~~~~~~~~~~~~~^~ /<>/src/pwiz/utility/misc/Filesystem.hpp:64:24: note: in definition of macro ‘BFS_STRING’ 64 | #define BFS_STRING(p) (p).string() | ^ /usr/include/boost/filesystem/path.hpp:1127:10: note: declared here 1127 | path leaf() const { return filename(); } | ^~~~ /<>/src/pwiz/data/msdata/Serializer_mzXML.cpp:1141:79: warning: ‘boost::filesystem::path boost::filesystem::path::leaf() const’ is deprecated: Use path::filename() instead [-Wdeprecated-declarations] 1141 | msd.id = msd.run.id = BFS_STRING(bfs::path(lcp).parent_path().leaf()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /<>/src/pwiz/utility/misc/Filesystem.hpp:64:24: note: in definition of macro ‘BFS_STRING’ 64 | #define BFS_STRING(p) (p).string() | ^ /usr/include/boost/filesystem/path.hpp:1127:10: note: declared here 1127 | path leaf() const { return filename(); } | ^~~~ /<>/src/pwiz/data/msdata/Serializer_mzXML.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::Handler_msInstrument::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)’: /<>/src/pwiz/data/msdata/Serializer_mzXML.cpp:1156:47: warning: unused parameter ‘position’ [-Wunused-parameter] 1156 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/data/msdata/Serializer_mzXML.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::Handler_msInstrument::endElement(const std::string&, pwiz::minimxml::SAXParser::Handler::stream_offset)’: /<>/src/pwiz/data/msdata/Serializer_mzXML.cpp:1237:45: warning: unused parameter ‘position’ [-Wunused-parameter] 1237 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/data/msdata/Serializer_mzXML.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::Handler_dataProcessing::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)’: /<>/src/pwiz/data/msdata/Serializer_mzXML.cpp:1285:47: warning: unused parameter ‘position’ [-Wunused-parameter] 1285 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/data/msdata/Serializer_mzXML.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::Handler_mzXML::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)’: /<>/src/pwiz/data/msdata/Serializer_mzXML.cpp:1353:47: warning: unused parameter ‘position’ [-Wunused-parameter] 1353 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ [ 30%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumListBase.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -I/<>/obj-aarch64-linux-gnu/src -I/<>/src -I/<>/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumListBase.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumListBase.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumListBase.cpp.o -c /<>/src/pwiz/data/msdata/SpectrumListBase.cpp In file included from /<>/src/pwiz/data/msdata/MSData.hpp:29, from /<>/src/pwiz/data/msdata/SpectrumListBase.hpp:28, from /<>/src/pwiz/data/msdata/SpectrumListBase.cpp:25: /<>/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/13/bits/stl_algobase.h:65, from /usr/aarch64-linux-gnu/include/c++/13/algorithm:60, from /<>/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/aarch64-linux-gnu/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/aarch64-linux-gnu/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /<>/src/pwiz/data/msdata/MSData.hpp: In member function ‘virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const’: /<>/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter ‘msg’ [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /<>/src/pwiz/data/msdata/MSData.hpp: In member function ‘virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const’: /<>/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter ‘msg’ [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ In file included from /<>/src/pwiz/data/msdata/SpectrumListBase.cpp:26: /<>/src/pwiz/utility/misc/String.hpp: In lambda function: /<>/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] 87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); | ~~~~~~~~~~~~~~~~~~~~~^~~ [ 31%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_MGF.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -I/<>/obj-aarch64-linux-gnu/src -I/<>/src -I/<>/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_MGF.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_MGF.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_MGF.cpp.o -c /<>/src/pwiz/data/msdata/SpectrumList_MGF.cpp In file included from /<>/src/pwiz/data/msdata/MSData.hpp:29, from /<>/src/pwiz/data/msdata/SpectrumListBase.hpp:28, from /<>/src/pwiz/data/msdata/SpectrumList_MGF.hpp:30, from /<>/src/pwiz/data/msdata/SpectrumList_MGF.cpp:26: /<>/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/13/bits/stl_algobase.h:65, from /usr/aarch64-linux-gnu/include/c++/13/algorithm:60, from /<>/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/aarch64-linux-gnu/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/aarch64-linux-gnu/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /<>/src/pwiz/data/msdata/MSData.hpp: In member function ‘virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const’: /<>/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter ‘msg’ [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /<>/src/pwiz/data/msdata/MSData.hpp: In member function ‘virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const’: /<>/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter ‘msg’ [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /<>/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /<>/src/pwiz/data/common/ParamTypes.hpp:29, from /<>/src/pwiz/data/msdata/MSData.hpp:30: /usr/include/boost/iterator.hpp: At global scope: /usr/include/boost/iterator.hpp:10:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/src/pwiz/utility/misc/Std.hpp:31, from /<>/src/pwiz/data/msdata/SpectrumList_MGF.cpp:28: /<>/src/pwiz/utility/misc/String.hpp: In lambda function: /<>/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] 87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); | ~~~~~~~~~~~~~~~~~~~~~^~~ [ 32%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_MSn.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -I/<>/obj-aarch64-linux-gnu/src -I/<>/src -I/<>/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_MSn.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_MSn.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_MSn.cpp.o -c /<>/src/pwiz/data/msdata/SpectrumList_MSn.cpp In file included from /<>/src/pwiz/data/msdata/MSData.hpp:29, from /<>/src/pwiz/data/msdata/SpectrumListBase.hpp:28, from /<>/src/pwiz/data/msdata/SpectrumList_MSn.hpp:29, from /<>/src/pwiz/data/msdata/SpectrumList_MSn.cpp:26: /<>/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/13/bits/stl_algobase.h:65, from /usr/aarch64-linux-gnu/include/c++/13/algorithm:60, from /<>/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/aarch64-linux-gnu/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/aarch64-linux-gnu/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /<>/src/pwiz/data/msdata/MSData.hpp: In member function ‘virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const’: /<>/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter ‘msg’ [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /<>/src/pwiz/data/msdata/MSData.hpp: In member function ‘virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const’: /<>/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter ‘msg’ [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /<>/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /<>/src/pwiz/data/common/ParamTypes.hpp:29, from /<>/src/pwiz/data/msdata/MSData.hpp:30: /usr/include/boost/iterator.hpp: At global scope: /usr/include/boost/iterator.hpp:10:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/src/pwiz/utility/misc/Std.hpp:31, from /<>/src/pwiz/data/msdata/SpectrumList_MSn.cpp:28: /<>/src/pwiz/utility/misc/String.hpp: In lambda function: /<>/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] 87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); | ~~~~~~~~~~~~~~~~~~~~~^~~ [ 34%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumWorkerThreads.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -I/<>/obj-aarch64-linux-gnu/src -I/<>/src -I/<>/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumWorkerThreads.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumWorkerThreads.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumWorkerThreads.cpp.o -c /<>/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp In file included from /usr/include/boost/lexical_cast.hpp:26, from /<>/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /<>/src/pwiz/utility/misc/Environment.hpp:24, from /<>/src/pwiz/utility/misc/Std.hpp:29, from /<>/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp:24: /usr/include/boost/iterator.hpp:10:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/src/pwiz/utility/misc/Std.hpp:31: /<>/src/pwiz/utility/misc/String.hpp: In lambda function: /<>/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] 87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); | ~~~~~~~~~~~~~~~~~~~~~^~~ In file included from /<>/src/pwiz/data/msdata/MSData.hpp:29, from /<>/src/pwiz/data/msdata/SpectrumWorkerThreads.hpp:26, from /<>/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp:26: /<>/src/pwiz/utility/misc/BinaryData.hpp: At global scope: /<>/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/13/bits/stl_iterator_base_funcs.h:66, from /usr/aarch64-linux-gnu/include/c++/13/string:47, from /usr/aarch64-linux-gnu/include/c++/13/stdexcept:39, from /<>/src/pwiz/utility/misc/Exception.hpp:28, from /<>/src/pwiz/utility/misc/Std.hpp:28: /usr/aarch64-linux-gnu/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/aarch64-linux-gnu/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /<>/src/pwiz/data/msdata/MSData.hpp: In member function ‘virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const’: /<>/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter ‘msg’ [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /<>/src/pwiz/data/msdata/MSData.hpp: In member function ‘virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const’: /<>/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter ‘msg’ [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /<>/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp: In constructor ‘pwiz::msdata::SpectrumWorkerThreads::Impl::Impl(const pwiz::msdata::SpectrumList&, bool, bool)’: /<>/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp:337:22: warning: ‘pwiz::msdata::SpectrumWorkerThreads::Impl::taskMRU_’ will be initialized after [-Wreorder] 337 | mru_list taskMRU_; | ^~~~~~~~ /<>/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp:334:10: warning: ‘bool pwiz::msdata::SpectrumWorkerThreads::Impl::continueOnError_’ [-Wreorder] 334 | bool continueOnError_; | ^~~~~~~~~~~~~~~~ /<>/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp:60:5: warning: when initialized here [-Wreorder] 60 | Impl(const SpectrumList& sl, bool useWorkerThreads, bool continueOnError) | ^~~~ [ 35%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/mzmlb/Connection_mzMLb.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -I/<>/obj-aarch64-linux-gnu/src -I/<>/src -I/<>/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/mzmlb/Connection_mzMLb.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/mzmlb/Connection_mzMLb.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/mzmlb/Connection_mzMLb.cpp.o -c /<>/src/pwiz/data/msdata/mzmlb/Connection_mzMLb.cpp /<>/src/pwiz/data/msdata/mzmlb/Connection_mzMLb.cpp: In constructor ‘pwiz::msdata::mzmlb::Connection_mzMLb::Connection_mzMLb(const std::string&, int, int)’: /<>/src/pwiz/data/msdata/mzmlb/Connection_mzMLb.cpp:142:26: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 142 | nbytes = (nbytes > chunk_size) ? nbytes : chunk_size; // Set per dataset cache to twice the chunk size please | ~~~~~~~^~~~~~~~~~~~ [ 36%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/minimxml/SAXParser.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -I/<>/obj-aarch64-linux-gnu/src -I/<>/src -I/<>/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/utility/minimxml/SAXParser.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/utility/minimxml/SAXParser.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/utility/minimxml/SAXParser.cpp.o -c /<>/src/pwiz/utility/minimxml/SAXParser.cpp In file included from /<>/src/pwiz/utility/minimxml/SAXParser.cpp:28: /<>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)’: /<>/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter ‘name’ [-Wunused-parameter] 585 | virtual Status processingInstruction(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter ‘data’ [-Wunused-parameter] 586 | const std::string& data, | ~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter ‘position’ [-Wunused-parameter] 587 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)’: /<>/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter ‘name’ [-Wunused-parameter] 589 | virtual Status startElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter ‘attributes’ [-Wunused-parameter] 590 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter ‘position’ [-Wunused-parameter] 591 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)’: /<>/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter ‘name’ [-Wunused-parameter] 593 | virtual Status endElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter ‘position’ [-Wunused-parameter] 594 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)’: /<>/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter ‘text’ [-Wunused-parameter] 596 | virtual Status characters(const SAXParser::saxstring& text, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter ‘position’ [-Wunused-parameter] 597 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /<>/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /<>/src/pwiz/utility/minimxml/SAXParser.hpp:31: /usr/include/boost/iterator.hpp: At global scope: /usr/include/boost/iterator.hpp:10:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/src/pwiz/utility/misc/Std.hpp:31, from /<>/src/pwiz/utility/minimxml/SAXParser.cpp:29: /<>/src/pwiz/utility/misc/String.hpp: In lambda function: /<>/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] 87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); | ~~~~~~~~~~~~~~~~~~~~~^~~ /<>/src/pwiz/utility/minimxml/SAXParser.cpp: In function ‘void pwiz::minimxml::SAXParser::parse(std::istream&, Handler&)’: /<>/src/pwiz/utility/minimxml/SAXParser.cpp:543:61: warning: offset ‘1’ outside bounds of constant string [-Warray-bounds=] 543 | Handler::Status status = wrangler.endElement(buffer.c_str()+1, position); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/pwiz/utility/minimxml/SAXParser.cpp:549:17: warning: ‘inCDATA’ may be used uninitialized [-Wmaybe-uninitialized] 549 | if (inCDATA) | ^~ /<>/src/pwiz/utility/minimxml/SAXParser.cpp:501:14: note: ‘inCDATA’ was declared here 501 | bool inCDATA; | ^~~~~~~ [ 37%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/minimxml/XMLWriter.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -I/<>/obj-aarch64-linux-gnu/src -I/<>/src -I/<>/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/utility/minimxml/XMLWriter.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/utility/minimxml/XMLWriter.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/utility/minimxml/XMLWriter.cpp.o -c /<>/src/pwiz/utility/minimxml/XMLWriter.cpp In file included from /usr/include/boost/lexical_cast.hpp:26, from /<>/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /<>/src/pwiz/utility/minimxml/XMLWriter.hpp:29, from /<>/src/pwiz/utility/minimxml/XMLWriter.cpp:25: /usr/include/boost/iterator.hpp:10:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/src/pwiz/utility/misc/Std.hpp:31, from /<>/src/pwiz/utility/minimxml/XMLWriter.cpp:26: /<>/src/pwiz/utility/misc/String.hpp: In lambda function: /<>/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] 87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); | ~~~~~~~~~~~~~~~~~~~~~^~~ [ 39%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/Base64.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -I/<>/obj-aarch64-linux-gnu/src -I/<>/src -I/<>/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/Base64.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/Base64.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/Base64.cpp.o -c /<>/src/pwiz/utility/misc/Base64.cpp In file included from /usr/include/boost/lexical_cast.hpp:26, from /<>/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /<>/src/pwiz/utility/misc/Environment.hpp:24, from /<>/src/pwiz/utility/misc/Std.hpp:29, from /<>/src/pwiz/utility/misc/Base64.cpp:26: /usr/include/boost/iterator.hpp:10:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/src/pwiz/utility/misc/Std.hpp:31: /<>/src/pwiz/utility/misc/String.hpp: In lambda function: /<>/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] 87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); | ~~~~~~~~~~~~~~~~~~~~~^~~ [ 40%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/IterationListener.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -I/<>/obj-aarch64-linux-gnu/src -I/<>/src -I/<>/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/IterationListener.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/IterationListener.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/IterationListener.cpp.o -c /<>/src/pwiz/utility/misc/IterationListener.cpp In file included from /usr/include/boost/lexical_cast.hpp:26, from /<>/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /<>/src/pwiz/utility/misc/Environment.hpp:24, from /<>/src/pwiz/utility/misc/Std.hpp:29, from /<>/src/pwiz/utility/misc/IterationListener.cpp:26: /usr/include/boost/iterator.hpp:10:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/src/pwiz/utility/misc/Std.hpp:31: /<>/src/pwiz/utility/misc/String.hpp: In lambda function: /<>/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] 87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); | ~~~~~~~~~~~~~~~~~~~~~^~~ In file included from /<>/src/pwiz/utility/misc/IterationListener.cpp:27: /<>/src/pwiz/utility/misc/IterationListener.hpp: In member function ‘virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)’: /<>/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter ‘updateMessage’ [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ [ 41%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/SHA1.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -I/<>/obj-aarch64-linux-gnu/src -I/<>/src -I/<>/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/SHA1.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/SHA1.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/SHA1.cpp.o -c /<>/src/pwiz/utility/misc/SHA1.cpp [ 42%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/SHA1Calculator.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -I/<>/obj-aarch64-linux-gnu/src -I/<>/src -I/<>/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/SHA1Calculator.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/SHA1Calculator.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/SHA1Calculator.cpp.o -c /<>/src/pwiz/utility/misc/SHA1Calculator.cpp In file included from /usr/include/boost/smart_ptr/detail/requires_cxx11.hpp:9, from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, from /usr/include/boost/shared_ptr.hpp:17, from /<>/src/pwiz/utility/misc/SHA1Calculator.hpp:28, from /<>/src/pwiz/utility/misc/SHA1Calculator.cpp:32: /usr/include/boost/iterator.hpp:10:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/src/pwiz/utility/misc/Std.hpp:31, from /<>/src/pwiz/utility/misc/SHA1Calculator.cpp:33: /<>/src/pwiz/utility/misc/String.hpp: In lambda function: /<>/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] 87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); | ~~~~~~~~~~~~~~~~~~~~~^~~ [ 43%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/random_access_compressed_ifstream.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -I/<>/obj-aarch64-linux-gnu/src -I/<>/src -I/<>/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/random_access_compressed_ifstream.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/random_access_compressed_ifstream.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/random_access_compressed_ifstream.cpp.o -c /<>/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp In file included from /usr/include/boost/smart_ptr/detail/requires_cxx11.hpp:9, from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/iostreams/device/file_descriptor.hpp:28, from /<>/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp:69: /usr/include/boost/iterator.hpp:10:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/src/pwiz/utility/misc/Std.hpp:31, from /<>/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp:76: /<>/src/pwiz/utility/misc/String.hpp: In lambda function: /<>/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] 87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); | ~~~~~~~~~~~~~~~~~~~~~^~~ /<>/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp: In member function ‘std::streampos pwiz::util::random_access_compressed_streambuf::my_seekg(std::streampos, std::ios_base::seekdir, std::ios_base::openmode)’: /<>/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp:824:138: warning: unused parameter ‘Mode’ [-Wunused-parameter] 824 | std::streampos random_access_compressed_streambuf::my_seekg(std::streampos offset, std::ios_base::seekdir whence,std::ios_base::openmode Mode) { | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp: In member function ‘std::streampos pwiz::util::chunky_streambuf::my_seekg(boost::iostreams::stream_offset, std::ios_base::seekdir, std::ios_base::openmode)’: /<>/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp:1199:137: warning: unused parameter ‘Mode’ [-Wunused-parameter] 1199 | std::streampos chunky_streambuf::my_seekg(boost::iostreams::stream_offset offset, std::ios_base::seekdir whence,std::ios_base::openmode Mode) { | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~ [ 45%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/BinaryData.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -I/<>/obj-aarch64-linux-gnu/src -I/<>/src -I/<>/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/BinaryData.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/BinaryData.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/BinaryData.cpp.o -c /<>/src/pwiz/utility/misc/BinaryData.cpp In file included from /<>/src/pwiz/utility/misc/BinaryData.cpp:24: /<>/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/13/bits/stl_algobase.h:65, from /usr/aarch64-linux-gnu/include/c++/13/algorithm:60, from /<>/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/aarch64-linux-gnu/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/aarch64-linux-gnu/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.hpp: In instantiation of ‘const T& pwiz::util::BinaryData::at(size_type) const [with T = double; const_reference = const double&; size_type = long unsigned int]’: /<>/src/pwiz/utility/misc/BinaryData.cpp:498:30: required from here /<>/src/pwiz/utility/misc/BinaryData.hpp:256:19: warning: comparison of unsigned expression in ‘< 0’ is always false [-Wtype-limits] 256 | if (index < 0 || index >= size()) | ~~~~~~^~~ /<>/src/pwiz/utility/misc/BinaryData.hpp: In instantiation of ‘T& pwiz::util::BinaryData::at(size_type) [with T = double; reference = double&; size_type = long unsigned int]’: /<>/src/pwiz/utility/misc/BinaryData.cpp:498:30: required from here /<>/src/pwiz/utility/misc/BinaryData.hpp:263:19: warning: comparison of unsigned expression in ‘< 0’ is always false [-Wtype-limits] 263 | if (index < 0 || index >= size()) | ~~~~~~^~~ /<>/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of ‘pwiz::util::BinaryData::Impl::Impl(void*) [with T = double]’: /<>/src/pwiz/utility/misc/BinaryData.cpp:498:30: required from here /<>/src/pwiz/utility/misc/BinaryData.cpp:58:16: warning: unused parameter ‘cliNumericArray’ [-Wunused-parameter] 58 | Impl(void* cliNumericArray) | ~~~~~~^~~~~~~~~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of ‘pwiz::util::BinaryData::Impl& pwiz::util::BinaryData::Impl::operator=(void*) [with T = double]’: /<>/src/pwiz/utility/misc/BinaryData.cpp:498:30: required from here /<>/src/pwiz/utility/misc/BinaryData.cpp:72:27: warning: unused parameter ‘cliNumericArray’ [-Wunused-parameter] 72 | Impl& operator=(void* cliNumericArray) | ~~~~~~^~~~~~~~~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of ‘void pwiz::util::BinaryData::Impl::cacheIterators(pwiz::util::BinaryData&) [with T = double]’: /<>/src/pwiz/utility/misc/BinaryData.cpp:498:30: required from here /<>/src/pwiz/utility/misc/BinaryData.cpp:313:16: warning: implicitly-declared ‘constexpr pwiz::util::BinaryData::iterator& pwiz::util::BinaryData::iterator::operator=(const pwiz::util::BinaryData::iterator&)’ is deprecated [-Wdeprecated-copy] 313 | begin_ = iterator(binaryData, true); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.hpp:113:9: note: because ‘pwiz::util::BinaryData::iterator’ has user-provided ‘pwiz::util::BinaryData::iterator::iterator(const pwiz::util::BinaryData::iterator&) [with T = double]’ 113 | iterator(const iterator& rhs) : current_(rhs.current_) {} | ^~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.cpp:314:14: warning: implicitly-declared ‘constexpr pwiz::util::BinaryData::iterator& pwiz::util::BinaryData::iterator::operator=(const pwiz::util::BinaryData::iterator&)’ is deprecated [-Wdeprecated-copy] 314 | end_ = iterator(binaryData, false); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.hpp:113:9: note: because ‘pwiz::util::BinaryData::iterator’ has user-provided ‘pwiz::util::BinaryData::iterator::iterator(const pwiz::util::BinaryData::iterator&) [with T = double]’ 113 | iterator(const iterator& rhs) : current_(rhs.current_) {} | ^~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.cpp:315:17: warning: implicitly-declared ‘constexpr pwiz::util::BinaryData::const_iterator& pwiz::util::BinaryData::const_iterator::operator=(const pwiz::util::BinaryData::const_iterator&)’ is deprecated [-Wdeprecated-copy] 315 | cbegin_ = const_iterator(binaryData, true); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.hpp:79:9: note: because ‘pwiz::util::BinaryData::const_iterator’ has user-provided ‘pwiz::util::BinaryData::const_iterator::const_iterator(const pwiz::util::BinaryData::const_iterator&) [with T = double]’ 79 | const_iterator(const const_iterator& rhs) : current_(rhs.current_) {} | ^~~~~~~~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.cpp:316:15: warning: implicitly-declared ‘constexpr pwiz::util::BinaryData::const_iterator& pwiz::util::BinaryData::const_iterator::operator=(const pwiz::util::BinaryData::const_iterator&)’ is deprecated [-Wdeprecated-copy] 316 | cend_ = const_iterator(binaryData, false); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.hpp:79:9: note: because ‘pwiz::util::BinaryData::const_iterator’ has user-provided ‘pwiz::util::BinaryData::const_iterator::const_iterator(const pwiz::util::BinaryData::const_iterator&) [with T = double]’ 79 | const_iterator(const const_iterator& rhs) : current_(rhs.current_) {} | ^~~~~~~~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.hpp: In instantiation of ‘const T& pwiz::util::BinaryData::at(size_type) const [with T = float; const_reference = const float&; size_type = long unsigned int]’: /<>/src/pwiz/utility/misc/BinaryData.cpp:499:30: required from here /<>/src/pwiz/utility/misc/BinaryData.hpp:256:19: warning: comparison of unsigned expression in ‘< 0’ is always false [-Wtype-limits] 256 | if (index < 0 || index >= size()) | ~~~~~~^~~ /<>/src/pwiz/utility/misc/BinaryData.hpp: In instantiation of ‘T& pwiz::util::BinaryData::at(size_type) [with T = float; reference = float&; size_type = long unsigned int]’: /<>/src/pwiz/utility/misc/BinaryData.cpp:499:30: required from here /<>/src/pwiz/utility/misc/BinaryData.hpp:263:19: warning: comparison of unsigned expression in ‘< 0’ is always false [-Wtype-limits] 263 | if (index < 0 || index >= size()) | ~~~~~~^~~ /<>/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of ‘pwiz::util::BinaryData::Impl::Impl(void*) [with T = float]’: /<>/src/pwiz/utility/misc/BinaryData.cpp:499:30: required from here /<>/src/pwiz/utility/misc/BinaryData.cpp:58:16: warning: unused parameter ‘cliNumericArray’ [-Wunused-parameter] 58 | Impl(void* cliNumericArray) | ~~~~~~^~~~~~~~~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of ‘pwiz::util::BinaryData::Impl& pwiz::util::BinaryData::Impl::operator=(void*) [with T = float]’: /<>/src/pwiz/utility/misc/BinaryData.cpp:499:30: required from here /<>/src/pwiz/utility/misc/BinaryData.cpp:72:27: warning: unused parameter ‘cliNumericArray’ [-Wunused-parameter] 72 | Impl& operator=(void* cliNumericArray) | ~~~~~~^~~~~~~~~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of ‘void pwiz::util::BinaryData::Impl::cacheIterators(pwiz::util::BinaryData&) [with T = float]’: /<>/src/pwiz/utility/misc/BinaryData.cpp:499:30: required from here /<>/src/pwiz/utility/misc/BinaryData.cpp:313:16: warning: implicitly-declared ‘constexpr pwiz::util::BinaryData::iterator& pwiz::util::BinaryData::iterator::operator=(const pwiz::util::BinaryData::iterator&)’ is deprecated [-Wdeprecated-copy] 313 | begin_ = iterator(binaryData, true); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.hpp:113:9: note: because ‘pwiz::util::BinaryData::iterator’ has user-provided ‘pwiz::util::BinaryData::iterator::iterator(const pwiz::util::BinaryData::iterator&) [with T = float]’ 113 | iterator(const iterator& rhs) : current_(rhs.current_) {} | ^~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.cpp:314:14: warning: implicitly-declared ‘constexpr pwiz::util::BinaryData::iterator& pwiz::util::BinaryData::iterator::operator=(const pwiz::util::BinaryData::iterator&)’ is deprecated [-Wdeprecated-copy] 314 | end_ = iterator(binaryData, false); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.hpp:113:9: note: because ‘pwiz::util::BinaryData::iterator’ has user-provided ‘pwiz::util::BinaryData::iterator::iterator(const pwiz::util::BinaryData::iterator&) [with T = float]’ 113 | iterator(const iterator& rhs) : current_(rhs.current_) {} | ^~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.cpp:315:17: warning: implicitly-declared ‘constexpr pwiz::util::BinaryData::const_iterator& pwiz::util::BinaryData::const_iterator::operator=(const pwiz::util::BinaryData::const_iterator&)’ is deprecated [-Wdeprecated-copy] 315 | cbegin_ = const_iterator(binaryData, true); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.hpp:79:9: note: because ‘pwiz::util::BinaryData::const_iterator’ has user-provided ‘pwiz::util::BinaryData::const_iterator::const_iterator(const pwiz::util::BinaryData::const_iterator&) [with T = float]’ 79 | const_iterator(const const_iterator& rhs) : current_(rhs.current_) {} | ^~~~~~~~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.cpp:316:15: warning: implicitly-declared ‘constexpr pwiz::util::BinaryData::const_iterator& pwiz::util::BinaryData::const_iterator::operator=(const pwiz::util::BinaryData::const_iterator&)’ is deprecated [-Wdeprecated-copy] 316 | cend_ = const_iterator(binaryData, false); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.hpp:79:9: note: because ‘pwiz::util::BinaryData::const_iterator’ has user-provided ‘pwiz::util::BinaryData::const_iterator::const_iterator(const pwiz::util::BinaryData::const_iterator&) [with T = float]’ 79 | const_iterator(const const_iterator& rhs) : current_(rhs.current_) {} | ^~~~~~~~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.hpp: In instantiation of ‘const T& pwiz::util::BinaryData::at(size_type) const [with T = long int; const_reference = const long int&; size_type = long unsigned int]’: /<>/src/pwiz/utility/misc/BinaryData.cpp:500:30: required from here /<>/src/pwiz/utility/misc/BinaryData.hpp:256:19: warning: comparison of unsigned expression in ‘< 0’ is always false [-Wtype-limits] 256 | if (index < 0 || index >= size()) | ~~~~~~^~~ /<>/src/pwiz/utility/misc/BinaryData.hpp: In instantiation of ‘T& pwiz::util::BinaryData::at(size_type) [with T = long int; reference = long int&; size_type = long unsigned int]’: /<>/src/pwiz/utility/misc/BinaryData.cpp:500:30: required from here /<>/src/pwiz/utility/misc/BinaryData.hpp:263:19: warning: comparison of unsigned expression in ‘< 0’ is always false [-Wtype-limits] 263 | if (index < 0 || index >= size()) | ~~~~~~^~~ /<>/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of ‘pwiz::util::BinaryData::Impl::Impl(void*) [with T = long int]’: /<>/src/pwiz/utility/misc/BinaryData.cpp:500:30: required from here /<>/src/pwiz/utility/misc/BinaryData.cpp:58:16: warning: unused parameter ‘cliNumericArray’ [-Wunused-parameter] 58 | Impl(void* cliNumericArray) | ~~~~~~^~~~~~~~~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of ‘pwiz::util::BinaryData::Impl& pwiz::util::BinaryData::Impl::operator=(void*) [with T = long int]’: /<>/src/pwiz/utility/misc/BinaryData.cpp:500:30: required from here /<>/src/pwiz/utility/misc/BinaryData.cpp:72:27: warning: unused parameter ‘cliNumericArray’ [-Wunused-parameter] 72 | Impl& operator=(void* cliNumericArray) | ~~~~~~^~~~~~~~~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of ‘void pwiz::util::BinaryData::Impl::cacheIterators(pwiz::util::BinaryData&) [with T = long int]’: /<>/src/pwiz/utility/misc/BinaryData.cpp:500:30: required from here /<>/src/pwiz/utility/misc/BinaryData.cpp:313:16: warning: implicitly-declared ‘constexpr pwiz::util::BinaryData::iterator& pwiz::util::BinaryData::iterator::operator=(const pwiz::util::BinaryData::iterator&)’ is deprecated [-Wdeprecated-copy] 313 | begin_ = iterator(binaryData, true); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.hpp:113:9: note: because ‘pwiz::util::BinaryData::iterator’ has user-provided ‘pwiz::util::BinaryData::iterator::iterator(const pwiz::util::BinaryData::iterator&) [with T = long int]’ 113 | iterator(const iterator& rhs) : current_(rhs.current_) {} | ^~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.cpp:314:14: warning: implicitly-declared ‘constexpr pwiz::util::BinaryData::iterator& pwiz::util::BinaryData::iterator::operator=(const pwiz::util::BinaryData::iterator&)’ is deprecated [-Wdeprecated-copy] 314 | end_ = iterator(binaryData, false); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.hpp:113:9: note: because ‘pwiz::util::BinaryData::iterator’ has user-provided ‘pwiz::util::BinaryData::iterator::iterator(const pwiz::util::BinaryData::iterator&) [with T = long int]’ 113 | iterator(const iterator& rhs) : current_(rhs.current_) {} | ^~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.cpp:315:17: warning: implicitly-declared ‘constexpr pwiz::util::BinaryData::const_iterator& pwiz::util::BinaryData::const_iterator::operator=(const pwiz::util::BinaryData::const_iterator&)’ is deprecated [-Wdeprecated-copy] 315 | cbegin_ = const_iterator(binaryData, true); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.hpp:79:9: note: because ‘pwiz::util::BinaryData::const_iterator’ has user-provided ‘pwiz::util::BinaryData::const_iterator::const_iterator(const pwiz::util::BinaryData::const_iterator&) [with T = long int]’ 79 | const_iterator(const const_iterator& rhs) : current_(rhs.current_) {} | ^~~~~~~~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.cpp:316:15: warning: implicitly-declared ‘constexpr pwiz::util::BinaryData::const_iterator& pwiz::util::BinaryData::const_iterator::operator=(const pwiz::util::BinaryData::const_iterator&)’ is deprecated [-Wdeprecated-copy] 316 | cend_ = const_iterator(binaryData, false); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.hpp:79:9: note: because ‘pwiz::util::BinaryData::const_iterator’ has user-provided ‘pwiz::util::BinaryData::const_iterator::const_iterator(const pwiz::util::BinaryData::const_iterator&) [with T = long int]’ 79 | const_iterator(const const_iterator& rhs) : current_(rhs.current_) {} | ^~~~~~~~~~~~~~ [ 46%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/IntegerSet.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -I/<>/obj-aarch64-linux-gnu/src -I/<>/src -I/<>/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/IntegerSet.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/IntegerSet.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/IntegerSet.cpp.o -c /<>/src/pwiz/utility/misc/IntegerSet.cpp In file included from /usr/include/boost/lexical_cast.hpp:26, from /<>/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /<>/src/pwiz/utility/misc/Environment.hpp:24, from /<>/src/pwiz/utility/misc/Std.hpp:29, from /<>/src/pwiz/utility/misc/IntegerSet.cpp:26: /usr/include/boost/iterator.hpp:10:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/src/pwiz/utility/misc/Std.hpp:31: /<>/src/pwiz/utility/misc/String.hpp: In lambda function: /<>/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] 87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); | ~~~~~~~~~~~~~~~~~~~~~^~~ /<>/src/pwiz/utility/misc/IntegerSet.cpp: In member function ‘void pwiz::util::IntegerSet::insert(Interval)’: /<>/src/pwiz/utility/misc/IntegerSet.cpp:138:79: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] 138 | if (eraseBegin != intervals_.end() && eraseBegin->begin <= interval.begin && eraseBegin->end >= interval.end || | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/pwiz/utility/misc/IntegerSet.cpp: In member function ‘bool pwiz::util::IntegerSet::Iterator::operator==(const pwiz::util::IntegerSet::Iterator&) const’: /<>/src/pwiz/utility/misc/IntegerSet.cpp:325:63: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] 325 | return (it_!=end_ && that.it_!=that.end_ && it_==that.it_ && value_==that.value_ || | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ [ 47%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/String.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -I/<>/obj-aarch64-linux-gnu/src -I/<>/src -I/<>/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/String.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/String.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/String.cpp.o -c /<>/src/pwiz/utility/misc/String.cpp In file included from /<>/src/pwiz/utility/misc/String.cpp:21: /<>/src/pwiz/utility/misc/String.hpp: In lambda function: /<>/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] 87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); | ~~~~~~~~~~~~~~~~~~~~~^~~ [ 48%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/Filesystem.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -I/<>/obj-aarch64-linux-gnu/src -I/<>/src -I/<>/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/Filesystem.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/Filesystem.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/Filesystem.cpp.o -c /<>/src/pwiz/utility/misc/Filesystem.cpp /<>/src/pwiz/utility/misc/Filesystem.cpp:54:21: warning: WIN32 is NOT defined 54 | #pragma GCC warning "WIN32 is NOT defined" | ^~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/src/pwiz/utility/misc/Filesystem.hpp:34, from /<>/src/pwiz/utility/misc/Filesystem.cpp:26: /<>/src/pwiz/utility/misc/String.hpp: In lambda function: /<>/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] 87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); | ~~~~~~~~~~~~~~~~~~~~~^~~ In file included from /usr/include/boost/function/detail/requires_cxx11.hpp:9, from /usr/include/boost/function/detail/prologue.hpp:12, from /usr/include/boost/function.hpp:30, from /usr/include/boost/algorithm/string/detail/find_iterator.hpp:18, from /usr/include/boost/algorithm/string/find_iterator.hpp:24, from /usr/include/boost/algorithm/string/iter_find.hpp:27, from /usr/include/boost/algorithm/string/split.hpp:16, from /usr/include/boost/algorithm/string.hpp:23, from /<>/src/pwiz/utility/misc/String.hpp:31: /usr/include/boost/iterator.hpp: At global scope: /usr/include/boost/iterator.hpp:10:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ /<>/src/pwiz/utility/misc/Filesystem.cpp: In function ‘void pwiz::util::force_close_handles_to_filepath(const std::string&, bool)’: /<>/src/pwiz/utility/misc/Filesystem.cpp:350:52: warning: unused parameter ‘filepath’ [-Wunused-parameter] 350 | force_close_handles_to_filepath(const std::string &filepath, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/utility/misc/Filesystem.cpp:351:38: warning: unused parameter ‘closeMemoryMappedSections’ [-Wunused-parameter] 351 | bool closeMemoryMappedSections) noexcept(true) | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/pwiz/utility/misc/Filesystem.cpp: In function ‘void pwiz::util::{anonymous}::copy_recursive(const boost::filesystem::path&, const boost::filesystem::path&)’: /<>/src/pwiz/utility/misc/Filesystem.cpp:686:22: warning: ‘void boost::filesystem::copy_directory(const path&, const path&)’ is deprecated: Use create_directory() instead [-Wdeprecated-declarations] 686 | bfs::copy_directory(from, to); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /<>/src/pwiz/utility/misc/Filesystem.hpp:36: /usr/include/boost/filesystem/operations.hpp:437:13: note: declared here 437 | inline void copy_directory(path const& from, path const& to) | ^~~~~~~~~~~~~~ /<>/src/pwiz/utility/misc/Filesystem.cpp: In function ‘void pwiz::util::{anonymous}::copy_recursive(const boost::filesystem::path&, const boost::filesystem::path&, boost::system::error_code&)’: /<>/src/pwiz/utility/misc/Filesystem.cpp:710:22: warning: ‘void boost::filesystem::copy_directory(const path&, const path&, boost::system::error_code&)’ is deprecated: Use create_directory() instead [-Wdeprecated-declarations] 710 | bfs::copy_directory(from, to, ec); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /usr/include/boost/filesystem/operations.hpp:443:13: note: declared here 443 | inline void copy_directory(path const& from, path const& to, system::error_code& ec) BOOST_NOEXCEPT | ^~~~~~~~~~~~~~ /<>/src/pwiz/utility/misc/Filesystem.cpp: In function ‘void pwiz::util::copy_directory(const boost::filesystem::path&, const boost::filesystem::path&, bool, boost::system::error_code*)’: /<>/src/pwiz/utility/misc/Filesystem.cpp:764:28: warning: ‘void boost::filesystem::copy_directory(const path&, const path&, boost::system::error_code&)’ is deprecated: Use create_directory() instead [-Wdeprecated-declarations] 764 | bfs::copy_directory(from, to, *ec); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /usr/include/boost/filesystem/operations.hpp:443:13: note: declared here 443 | inline void copy_directory(path const& from, path const& to, system::error_code& ec) BOOST_NOEXCEPT | ^~~~~~~~~~~~~~ /<>/src/pwiz/utility/misc/Filesystem.cpp:766:28: warning: ‘void boost::filesystem::copy_directory(const path&, const path&)’ is deprecated: Use create_directory() instead [-Wdeprecated-declarations] 766 | bfs::copy_directory(from, to); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /usr/include/boost/filesystem/operations.hpp:437:13: note: declared here 437 | inline void copy_directory(path const& from, path const& to) | ^~~~~~~~~~~~~~ /<>/src/pwiz/utility/misc/Filesystem.cpp: In function ‘void pwiz::util::check_path_length(const std::string&)’: /<>/src/pwiz/utility/misc/Filesystem.cpp:967:33: warning: unused parameter ‘path’ [-Wunused-parameter] 967 | check_path_length(const string &path) | ~~~~~~~~~~~~~~^~~~ [ 50%] Linking CXX static library libpwizlite.a cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/cmake -P CMakeFiles/pwizlite-static.dir/cmake_clean_target.cmake cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/pwizlite-static.dir/link.txt --verbose=1 /usr/bin/aarch64-linux-gnu-ar qc libpwizlite.a "CMakeFiles/pwizlite-static.dir/pwiz/data/common/ParamTypes.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/common/CVTranslator.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/common/cv.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/common/diff_std.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/ChromatogramList_mzML.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/LegacyAdapter.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/MSNumpress.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/References.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumInfo.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_BTDX.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_mzML.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_mzXML.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Version.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/BinaryDataEncoder.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/DefaultReaderList.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/IO.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Index_mzML.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/MSData.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/MSDataFile.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Reader.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_MGF.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_MSn.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_mzML.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_mzXML.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumListBase.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_MGF.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_MSn.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumWorkerThreads.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/mzmlb/Connection_mzMLb.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/utility/minimxml/SAXParser.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/utility/minimxml/XMLWriter.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/Base64.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/IterationListener.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/SHA1.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/SHA1Calculator.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/random_access_compressed_ifstream.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/BinaryData.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/IntegerSet.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/String.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/Filesystem.cpp.o" /usr/bin/aarch64-linux-gnu-ranlib libpwizlite.a make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 50%] Built target pwizlite-static make -f src/CMakeFiles/pwizlite-shared.dir/build.make src/CMakeFiles/pwizlite-shared.dir/depend make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/src /<>/obj-aarch64-linux-gnu/src/CMakeFiles/pwizlite-shared.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f src/CMakeFiles/pwizlite-shared.dir/build.make src/CMakeFiles/pwizlite-shared.dir/build make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 51%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/common/ParamTypes.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/<>/obj-aarch64-linux-gnu/src -I/<>/src -I/<>/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/common/ParamTypes.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/common/ParamTypes.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/common/ParamTypes.cpp.o -c /<>/src/pwiz/data/common/ParamTypes.cpp In file included from /usr/include/boost/lexical_cast.hpp:26, from /<>/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /<>/src/pwiz/data/common/ParamTypes.hpp:29, from /<>/src/pwiz/data/common/ParamTypes.cpp:26: /usr/include/boost/iterator.hpp:10:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/src/pwiz/utility/misc/Std.hpp:31, from /<>/src/pwiz/data/common/ParamTypes.cpp:28: /<>/src/pwiz/utility/misc/String.hpp: In lambda function: /<>/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] 87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); | ~~~~~~~~~~~~~~~~~~~~~^~~ [ 52%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/common/CVTranslator.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/<>/obj-aarch64-linux-gnu/src -I/<>/src -I/<>/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/common/CVTranslator.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/common/CVTranslator.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/common/CVTranslator.cpp.o -c /<>/src/pwiz/data/common/CVTranslator.cpp In file included from /usr/include/boost/smart_ptr/detail/requires_cxx11.hpp:9, from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, from /usr/include/boost/shared_ptr.hpp:17, from /<>/src/pwiz/data/common/CVTranslator.hpp:31, from /<>/src/pwiz/data/common/CVTranslator.cpp:27: /usr/include/boost/iterator.hpp:10:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/src/pwiz/utility/misc/Std.hpp:31, from /<>/src/pwiz/data/common/CVTranslator.cpp:29: /<>/src/pwiz/utility/misc/String.hpp: In lambda function: /<>/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] 87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); | ~~~~~~~~~~~~~~~~~~~~~^~~ /<>/src/pwiz/data/common/CVTranslator.cpp: In function ‘bool pwiz::data::shouldIgnore(const std::string&, pwiz::cv::CVID, pwiz::cv::CVID)’: /<>/src/pwiz/data/common/CVTranslator.cpp:145:53: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] 145 | return (key=="unit_" && value==MS_unit_OBSOLETE && cvid==UO_unit || | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /<>/src/pwiz/data/common/CVTranslator.cpp:147:40: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] 147 | key=="pi_" && value==MS_PI && cvid==MS_pI || // MS_pI==isoelectric point | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /<>/src/pwiz/data/common/CVTranslator.cpp:148:40: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] 148 | key=="de_" && value==MS_DE && cvid==1001274 || // conflict between 1000246 and 1001274 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /<>/src/pwiz/data/common/CVTranslator.cpp: In function ‘bool pwiz::data::shouldReplace(const std::string&, pwiz::cv::CVID, pwiz::cv::CVID)’: /<>/src/pwiz/data/common/CVTranslator.cpp:153:34: warning: unused parameter ‘key’ [-Wunused-parameter] 153 | bool shouldReplace(const string& key, CVID value, CVID cvid) | ~~~~~~~~~~~~~~^~~ /<>/src/pwiz/data/common/CVTranslator.cpp:153:44: warning: unused parameter ‘value’ [-Wunused-parameter] 153 | bool shouldReplace(const string& key, CVID value, CVID cvid) | ~~~~~^~~~~ /<>/src/pwiz/data/common/CVTranslator.cpp:153:56: warning: unused parameter ‘cvid’ [-Wunused-parameter] 153 | bool shouldReplace(const string& key, CVID value, CVID cvid) | ~~~~~^~~~ [ 53%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/common/cv.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/<>/obj-aarch64-linux-gnu/src -I/<>/src -I/<>/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/common/cv.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/common/cv.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/common/cv.cpp.o -c /<>/src/pwiz/data/common/cv.cpp In file included from /usr/include/boost/lexical_cast.hpp:26, from /<>/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /<>/src/pwiz/utility/misc/Environment.hpp:24, from /<>/src/pwiz/utility/misc/Std.hpp:29, from /<>/src/pwiz/data/common/cv.cpp:34: /usr/include/boost/iterator.hpp:10:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/src/pwiz/utility/misc/Std.hpp:31: /<>/src/pwiz/utility/misc/String.hpp: In lambda function: /<>/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] 87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); | ~~~~~~~~~~~~~~~~~~~~~^~~ In file included from /<>/src/pwiz/data/common/cv.cpp:26735: /<>/src/pwiz/data/common/cv.inl: In function ‘const pwiz::cv::CVTermInfo& pwiz::cv::cvTermInfo(const char*)’: /<>/src/pwiz/data/common/cv.inl:103:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const size_t’ {aka ‘const long unsigned int’} [-Wsign-compare] 103 | for (int o=0;o>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/<>/obj-aarch64-linux-gnu/src -I/<>/src -I/<>/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/common/diff_std.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/common/diff_std.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/common/diff_std.cpp.o -c /<>/src/pwiz/data/common/diff_std.cpp In file included from /<>/src/pwiz/data/common/diff_std.cpp:27: /<>/src/pwiz/utility/misc/String.hpp: In lambda function: /<>/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] 87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); | ~~~~~~~~~~~~~~~~~~~~~^~~ /<>/src/pwiz/data/common/diff_std.cpp: In function ‘void pwiz::data::diff_impl::diff(const std::string&, const std::string&, std::string&, std::string&, const pwiz::data::BaseDiffConfig&)’: /<>/src/pwiz/data/common/diff_std.cpp:40:33: warning: unused parameter ‘config’ [-Wunused-parameter] 40 | const BaseDiffConfig& config) | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /<>/src/pwiz/data/common/diff_std.cpp: In function ‘void pwiz::data::diff_impl::diff(const boost::logic::tribool&, const boost::logic::tribool&, boost::logic::tribool&, boost::logic::tribool&, const pwiz::data::BaseDiffConfig&)’: /<>/src/pwiz/data/common/diff_std.cpp:88:33: warning: unused parameter ‘config’ [-Wunused-parameter] 88 | const BaseDiffConfig& config) | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /<>/src/pwiz/data/common/diff_std.cpp: In function ‘void pwiz::data::diff_impl::diff(pwiz::cv::CVID, pwiz::cv::CVID, pwiz::cv::CVID&, pwiz::cv::CVID&, const pwiz::data::BaseDiffConfig&)’: /<>/src/pwiz/data/common/diff_std.cpp:124:33: warning: unused parameter ‘config’ [-Wunused-parameter] 124 | const BaseDiffConfig& config) | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~ [ 56%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/ChromatogramList_mzML.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/<>/obj-aarch64-linux-gnu/src -I/<>/src -I/<>/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/ChromatogramList_mzML.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/ChromatogramList_mzML.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/ChromatogramList_mzML.cpp.o -c /<>/src/pwiz/data/msdata/ChromatogramList_mzML.cpp In file included from /<>/src/pwiz/data/msdata/MSData.hpp:29, from /<>/src/pwiz/data/msdata/ChromatogramListBase.hpp:28, from /<>/src/pwiz/data/msdata/ChromatogramList_mzML.hpp:29, from /<>/src/pwiz/data/msdata/ChromatogramList_mzML.cpp:26: /<>/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/13/bits/stl_algobase.h:65, from /usr/aarch64-linux-gnu/include/c++/13/algorithm:60, from /<>/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/aarch64-linux-gnu/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/aarch64-linux-gnu/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /<>/src/pwiz/data/msdata/MSData.hpp: In member function ‘virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const’: /<>/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter ‘msg’ [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /<>/src/pwiz/data/msdata/MSData.hpp: In member function ‘virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const’: /<>/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter ‘msg’ [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ In file included from /<>/src/pwiz/data/msdata/IO.hpp:32, from /<>/src/pwiz/data/msdata/ChromatogramList_mzML.cpp:27: /<>/src/pwiz/utility/misc/IterationListener.hpp: In member function ‘virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)’: /<>/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter ‘updateMessage’ [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ In file included from /<>/src/pwiz/data/msdata/ChromatogramList_mzML.cpp:29: /<>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)’: /<>/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter ‘name’ [-Wunused-parameter] 585 | virtual Status processingInstruction(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter ‘data’ [-Wunused-parameter] 586 | const std::string& data, | ~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter ‘position’ [-Wunused-parameter] 587 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)’: /<>/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter ‘name’ [-Wunused-parameter] 589 | virtual Status startElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter ‘attributes’ [-Wunused-parameter] 590 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter ‘position’ [-Wunused-parameter] 591 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)’: /<>/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter ‘name’ [-Wunused-parameter] 593 | virtual Status endElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter ‘position’ [-Wunused-parameter] 594 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)’: /<>/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter ‘text’ [-Wunused-parameter] 596 | virtual Status characters(const SAXParser::saxstring& text, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter ‘position’ [-Wunused-parameter] 597 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /<>/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /<>/src/pwiz/data/common/ParamTypes.hpp:29, from /<>/src/pwiz/data/msdata/MSData.hpp:30: /usr/include/boost/iterator.hpp: At global scope: /usr/include/boost/iterator.hpp:10:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/src/pwiz/utility/misc/Std.hpp:31, from /<>/src/pwiz/data/msdata/ChromatogramList_mzML.cpp:31: /<>/src/pwiz/utility/misc/String.hpp: In lambda function: /<>/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] 87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); | ~~~~~~~~~~~~~~~~~~~~~^~~ [ 57%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/LegacyAdapter.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/<>/obj-aarch64-linux-gnu/src -I/<>/src -I/<>/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/LegacyAdapter.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/LegacyAdapter.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/LegacyAdapter.cpp.o -c /<>/src/pwiz/data/msdata/LegacyAdapter.cpp In file included from /<>/src/pwiz/data/msdata/MSData.hpp:29, from /<>/src/pwiz/data/msdata/LegacyAdapter.hpp:30, from /<>/src/pwiz/data/msdata/LegacyAdapter.cpp:27: /<>/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/13/bits/stl_algobase.h:65, from /usr/aarch64-linux-gnu/include/c++/13/algorithm:60, from /<>/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/aarch64-linux-gnu/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/aarch64-linux-gnu/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /<>/src/pwiz/data/msdata/MSData.hpp: In member function ‘virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const’: /<>/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter ‘msg’ [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /<>/src/pwiz/data/msdata/MSData.hpp: In member function ‘virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const’: /<>/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter ‘msg’ [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /<>/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /<>/src/pwiz/data/common/ParamTypes.hpp:29, from /<>/src/pwiz/data/msdata/MSData.hpp:30: /usr/include/boost/iterator.hpp: At global scope: /usr/include/boost/iterator.hpp:10:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/src/pwiz/utility/misc/Std.hpp:31, from /<>/src/pwiz/data/msdata/LegacyAdapter.cpp:31: /<>/src/pwiz/utility/misc/String.hpp: In lambda function: /<>/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] 87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); | ~~~~~~~~~~~~~~~~~~~~~^~~ [ 58%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSNumpress.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/<>/obj-aarch64-linux-gnu/src -I/<>/src -I/<>/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSNumpress.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSNumpress.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSNumpress.cpp.o -c /<>/src/pwiz/data/msdata/MSNumpress.cpp /<>/src/pwiz/data/msdata/MSNumpress.cpp: In function ‘void pwiz::msdata::MSNumpress::encodeInt(int, unsigned char*, size_t*)’: /<>/src/pwiz/data/msdata/MSNumpress.cpp:114:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 114 | } else if (init == mask) { | ~~~~~^~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/13/iostream:41, from /<>/src/pwiz/data/msdata/MSNumpress.cpp:27: In member function ‘std::basic_ostream<_CharT, _Traits>::__ostream_type& std::basic_ostream<_CharT, _Traits>::operator<<(long long int) [with _CharT = char; _Traits = std::char_traits]’, inlined from ‘size_t pwiz::msdata::MSNumpress::decodeLinear(const unsigned char*, size_t, double*)’ at /<>/src/pwiz/data/msdata/MSNumpress.cpp:403:33: /usr/aarch64-linux-gnu/include/c++/13/ostream:204:25: warning: ‘extrapol’ may be used uninitialized [-Wmaybe-uninitialized] 204 | { return _M_insert(__n); } | ~~~~~~~~~^~~~~ /<>/src/pwiz/data/msdata/MSNumpress.cpp: In function ‘size_t pwiz::msdata::MSNumpress::decodeLinear(const unsigned char*, size_t, double*)’: /<>/src/pwiz/data/msdata/MSNumpress.cpp:346:15: note: ‘extrapol’ was declared here 346 | long long extrapol; | ^~~~~~~~ In member function ‘std::basic_ostream<_CharT, _Traits>::__ostream_type& std::basic_ostream<_CharT, _Traits>::operator<<(long long int) [with _CharT = char; _Traits = std::char_traits]’, inlined from ‘size_t pwiz::msdata::MSNumpress::decodeLinear(const unsigned char*, size_t, double*)’ at /<>/src/pwiz/data/msdata/MSNumpress.cpp:404:26: /usr/aarch64-linux-gnu/include/c++/13/ostream:204:25: warning: ‘y’ may be used uninitialized [-Wmaybe-uninitialized] 204 | { return _M_insert(__n); } | ~~~~~~~~~^~~~~ /<>/src/pwiz/data/msdata/MSNumpress.cpp: In function ‘size_t pwiz::msdata::MSNumpress::decodeLinear(const unsigned char*, size_t, double*)’: /<>/src/pwiz/data/msdata/MSNumpress.cpp:347:15: note: ‘y’ was declared here 347 | long long y; | ^ [ 59%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/References.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/<>/obj-aarch64-linux-gnu/src -I/<>/src -I/<>/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/References.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/References.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/References.cpp.o -c /<>/src/pwiz/data/msdata/References.cpp In file included from /<>/src/pwiz/data/msdata/MSData.hpp:29, from /<>/src/pwiz/data/msdata/References.hpp:29, from /<>/src/pwiz/data/msdata/References.cpp:25: /<>/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/13/bits/stl_algobase.h:65, from /usr/aarch64-linux-gnu/include/c++/13/algorithm:60, from /<>/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/aarch64-linux-gnu/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/aarch64-linux-gnu/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /<>/src/pwiz/data/msdata/MSData.hpp: In member function ‘virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const’: /<>/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter ‘msg’ [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /<>/src/pwiz/data/msdata/MSData.hpp: In member function ‘virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const’: /<>/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter ‘msg’ [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /<>/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /<>/src/pwiz/data/common/ParamTypes.hpp:29, from /<>/src/pwiz/data/msdata/MSData.hpp:30: /usr/include/boost/iterator.hpp: At global scope: /usr/include/boost/iterator.hpp:10:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/src/pwiz/utility/misc/Std.hpp:31, from /<>/src/pwiz/data/msdata/References.cpp:26: /<>/src/pwiz/utility/misc/String.hpp: In lambda function: /<>/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] 87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); | ~~~~~~~~~~~~~~~~~~~~~^~~ [ 60%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumInfo.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/<>/obj-aarch64-linux-gnu/src -I/<>/src -I/<>/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumInfo.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumInfo.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumInfo.cpp.o -c /<>/src/pwiz/data/msdata/SpectrumInfo.cpp In file included from /<>/src/pwiz/data/msdata/MSData.hpp:29, from /<>/src/pwiz/data/msdata/SpectrumInfo.hpp:29, from /<>/src/pwiz/data/msdata/SpectrumInfo.cpp:27: /<>/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/13/bits/stl_algobase.h:65, from /usr/aarch64-linux-gnu/include/c++/13/algorithm:60, from /<>/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/aarch64-linux-gnu/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/aarch64-linux-gnu/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /<>/src/pwiz/data/msdata/MSData.hpp: In member function ‘virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const’: /<>/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter ‘msg’ [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /<>/src/pwiz/data/msdata/MSData.hpp: In member function ‘virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const’: /<>/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter ‘msg’ [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /<>/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /<>/src/pwiz/data/common/ParamTypes.hpp:29, from /<>/src/pwiz/data/msdata/MSData.hpp:30: /usr/include/boost/iterator.hpp: At global scope: /usr/include/boost/iterator.hpp:10:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/src/pwiz/utility/misc/Std.hpp:31, from /<>/src/pwiz/data/msdata/SpectrumInfo.cpp:29: /<>/src/pwiz/utility/misc/String.hpp: In lambda function: /<>/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] 87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); | ~~~~~~~~~~~~~~~~~~~~~^~~ [ 62%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_BTDX.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/<>/obj-aarch64-linux-gnu/src -I/<>/src -I/<>/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_BTDX.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_BTDX.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_BTDX.cpp.o -c /<>/src/pwiz/data/msdata/SpectrumList_BTDX.cpp In file included from /<>/src/pwiz/data/msdata/MSData.hpp:29, from /<>/src/pwiz/data/msdata/SpectrumListBase.hpp:28, from /<>/src/pwiz/data/msdata/SpectrumList_BTDX.hpp:30, from /<>/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:26: /<>/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/13/bits/stl_algobase.h:65, from /usr/aarch64-linux-gnu/include/c++/13/algorithm:60, from /<>/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/aarch64-linux-gnu/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/aarch64-linux-gnu/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /<>/src/pwiz/data/msdata/MSData.hpp: In member function ‘virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const’: /<>/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter ‘msg’ [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /<>/src/pwiz/data/msdata/MSData.hpp: In member function ‘virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const’: /<>/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter ‘msg’ [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ In file included from /<>/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:28: /<>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)’: /<>/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter ‘name’ [-Wunused-parameter] 585 | virtual Status processingInstruction(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter ‘data’ [-Wunused-parameter] 586 | const std::string& data, | ~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter ‘position’ [-Wunused-parameter] 587 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)’: /<>/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter ‘name’ [-Wunused-parameter] 589 | virtual Status startElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter ‘attributes’ [-Wunused-parameter] 590 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter ‘position’ [-Wunused-parameter] 591 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)’: /<>/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter ‘name’ [-Wunused-parameter] 593 | virtual Status endElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter ‘position’ [-Wunused-parameter] 594 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)’: /<>/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter ‘text’ [-Wunused-parameter] 596 | virtual Status characters(const SAXParser::saxstring& text, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter ‘position’ [-Wunused-parameter] 597 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /<>/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /<>/src/pwiz/data/common/ParamTypes.hpp:29, from /<>/src/pwiz/data/msdata/MSData.hpp:30: /usr/include/boost/iterator.hpp: At global scope: /usr/include/boost/iterator.hpp:10:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/src/pwiz/utility/misc/Std.hpp:31, from /<>/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:29: /<>/src/pwiz/utility/misc/String.hpp: In lambda function: /<>/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] 87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); | ~~~~~~~~~~~~~~~~~~~~~^~~ /<>/src/pwiz/data/msdata/SpectrumList_BTDX.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerPeaks::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)’: /<>/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:121:47: warning: unused parameter ‘position’ [-Wunused-parameter] 121 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/data/msdata/SpectrumList_BTDX.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerPeaks::endElement(const std::string&, pwiz::minimxml::SAXParser::Handler::stream_offset)’: /<>/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:162:45: warning: unused parameter ‘position’ [-Wunused-parameter] 162 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/data/msdata/SpectrumList_BTDX.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexCreator::endElement(const std::string&, pwiz::minimxml::SAXParser::Handler::stream_offset)’: /<>/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:356:45: warning: unused parameter ‘position’ [-Wunused-parameter] 356 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ [ 63%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_mzML.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/<>/obj-aarch64-linux-gnu/src -I/<>/src -I/<>/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_mzML.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_mzML.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_mzML.cpp.o -c /<>/src/pwiz/data/msdata/SpectrumList_mzML.cpp In file included from /<>/src/pwiz/data/msdata/MSData.hpp:29, from /<>/src/pwiz/data/msdata/SpectrumListBase.hpp:28, from /<>/src/pwiz/data/msdata/SpectrumList_mzML.hpp:29, from /<>/src/pwiz/data/msdata/SpectrumList_mzML.cpp:26: /<>/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/13/bits/stl_algobase.h:65, from /usr/aarch64-linux-gnu/include/c++/13/algorithm:60, from /<>/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/aarch64-linux-gnu/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/aarch64-linux-gnu/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /<>/src/pwiz/data/msdata/MSData.hpp: In member function ‘virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const’: /<>/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter ‘msg’ [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /<>/src/pwiz/data/msdata/MSData.hpp: In member function ‘virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const’: /<>/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter ‘msg’ [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ In file included from /<>/src/pwiz/data/msdata/IO.hpp:32, from /<>/src/pwiz/data/msdata/SpectrumList_mzML.cpp:27: /<>/src/pwiz/utility/misc/IterationListener.hpp: In member function ‘virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)’: /<>/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter ‘updateMessage’ [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ In file included from /<>/src/pwiz/data/msdata/SpectrumList_mzML.cpp:29: /<>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)’: /<>/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter ‘name’ [-Wunused-parameter] 585 | virtual Status processingInstruction(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter ‘data’ [-Wunused-parameter] 586 | const std::string& data, | ~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter ‘position’ [-Wunused-parameter] 587 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)’: /<>/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter ‘name’ [-Wunused-parameter] 589 | virtual Status startElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter ‘attributes’ [-Wunused-parameter] 590 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter ‘position’ [-Wunused-parameter] 591 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)’: /<>/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter ‘name’ [-Wunused-parameter] 593 | virtual Status endElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter ‘position’ [-Wunused-parameter] 594 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)’: /<>/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter ‘text’ [-Wunused-parameter] 596 | virtual Status characters(const SAXParser::saxstring& text, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter ‘position’ [-Wunused-parameter] 597 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /<>/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /<>/src/pwiz/data/common/ParamTypes.hpp:29, from /<>/src/pwiz/data/msdata/MSData.hpp:30: /usr/include/boost/iterator.hpp: At global scope: /usr/include/boost/iterator.hpp:10:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/src/pwiz/utility/misc/Std.hpp:31, from /<>/src/pwiz/data/msdata/SpectrumList_mzML.cpp:30: /<>/src/pwiz/utility/misc/String.hpp: In lambda function: /<>/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] 87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); | ~~~~~~~~~~~~~~~~~~~~~^~~ /usr/include/boost/bind.hpp: At global scope: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ [ 64%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_mzXML.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/<>/obj-aarch64-linux-gnu/src -I/<>/src -I/<>/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_mzXML.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_mzXML.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_mzXML.cpp.o -c /<>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp In file included from /<>/src/pwiz/data/msdata/MSData.hpp:29, from /<>/src/pwiz/data/msdata/SpectrumListBase.hpp:28, from /<>/src/pwiz/data/msdata/SpectrumList_mzXML.hpp:29, from /<>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:25: /<>/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/13/bits/stl_algobase.h:65, from /usr/aarch64-linux-gnu/include/c++/13/algorithm:60, from /<>/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/aarch64-linux-gnu/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/aarch64-linux-gnu/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /<>/src/pwiz/data/msdata/MSData.hpp: In member function ‘virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const’: /<>/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter ‘msg’ [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /<>/src/pwiz/data/msdata/MSData.hpp: In member function ‘virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const’: /<>/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter ‘msg’ [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ In file included from /<>/src/pwiz/data/msdata/IO.hpp:32, from /<>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:26: /<>/src/pwiz/utility/misc/IterationListener.hpp: In member function ‘virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)’: /<>/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter ‘updateMessage’ [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ In file included from /<>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:28: /<>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)’: /<>/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter ‘name’ [-Wunused-parameter] 585 | virtual Status processingInstruction(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter ‘data’ [-Wunused-parameter] 586 | const std::string& data, | ~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter ‘position’ [-Wunused-parameter] 587 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)’: /<>/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter ‘name’ [-Wunused-parameter] 589 | virtual Status startElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter ‘attributes’ [-Wunused-parameter] 590 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter ‘position’ [-Wunused-parameter] 591 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)’: /<>/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter ‘name’ [-Wunused-parameter] 593 | virtual Status endElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter ‘position’ [-Wunused-parameter] 594 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)’: /<>/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter ‘text’ [-Wunused-parameter] 596 | virtual Status characters(const SAXParser::saxstring& text, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter ‘position’ [-Wunused-parameter] 597 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /<>/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /<>/src/pwiz/data/common/ParamTypes.hpp:29, from /<>/src/pwiz/data/msdata/MSData.hpp:30: /usr/include/boost/iterator.hpp: At global scope: /usr/include/boost/iterator.hpp:10:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/src/pwiz/utility/misc/Std.hpp:31, from /<>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:29: /<>/src/pwiz/utility/misc/String.hpp: In lambda function: /<>/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] 87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); | ~~~~~~~~~~~~~~~~~~~~~^~~ /<>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In constructor ‘pwiz::msdata::{anonymous}::SpectrumList_mzXMLImpl::SpectrumList_mzXMLImpl(boost::shared_ptr >, const pwiz::msdata::MSData&, bool)’: /<>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:84:30: warning: catching polymorphic type ‘struct pwiz::msdata::SpectrumList_mzXML::index_not_found’ by value [-Wcatch-value=] 84 | } catch (index_not_found e){ | ^ /<>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerPrecursor::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)’: /<>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:128:47: warning: unused parameter ‘position’ [-Wunused-parameter] 128 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerPrecursor::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)’: /<>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:212:45: warning: unused parameter ‘position’ [-Wunused-parameter] 212 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerPeaks::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)’: /<>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:239:47: warning: unused parameter ‘position’ [-Wunused-parameter] 239 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerPeaks::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)’: /<>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:282:45: warning: unused parameter ‘position’ [-Wunused-parameter] 282 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerPeaks::endElement(const std::string&, pwiz::minimxml::SAXParser::Handler::stream_offset)’: /<>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:302:70: warning: unused parameter ‘position’ [-Wunused-parameter] 302 | virtual Status endElement(const std::string& name, stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexOffset::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)’: /<>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:701:51: warning: unused parameter ‘attributes’ [-Wunused-parameter] 701 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /<>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:702:47: warning: unused parameter ‘position’ [-Wunused-parameter] 702 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexOffset::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)’: /<>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:710:45: warning: unused parameter ‘position’ [-Wunused-parameter] 710 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerOffset::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)’: /<>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:736:47: warning: unused parameter ‘position’ [-Wunused-parameter] 736 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerOffset::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)’: /<>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:754:45: warning: unused parameter ‘position’ [-Wunused-parameter] 754 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndex::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)’: /<>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:778:51: warning: unused parameter ‘attributes’ [-Wunused-parameter] 778 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /<>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:779:47: warning: unused parameter ‘position’ [-Wunused-parameter] 779 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndex::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)’: /<>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:796:59: warning: unused parameter ‘text’ [-Wunused-parameter] 796 | virtual Status characters(const SAXParser::saxstring& text, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:797:45: warning: unused parameter ‘position’ [-Wunused-parameter] 797 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexCreator::endElement(const std::string&, pwiz::minimxml::SAXParser::Handler::stream_offset)’: /<>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:885:45: warning: unused parameter ‘position’ [-Wunused-parameter] 885 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ [ 65%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Version.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/<>/obj-aarch64-linux-gnu/src -I/<>/src -I/<>/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Version.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Version.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Version.cpp.o -c /<>/src/pwiz/data/msdata/Version.cpp [ 67%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/BinaryDataEncoder.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/<>/obj-aarch64-linux-gnu/src -I/<>/src -I/<>/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/BinaryDataEncoder.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/BinaryDataEncoder.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/BinaryDataEncoder.cpp.o -c /<>/src/pwiz/data/msdata/BinaryDataEncoder.cpp In file included from /<>/src/pwiz/data/msdata/BinaryDataEncoder.hpp:29, from /<>/src/pwiz/data/msdata/BinaryDataEncoder.cpp:26: /<>/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/13/bits/stl_algobase.h:65, from /usr/aarch64-linux-gnu/include/c++/13/algorithm:60, from /<>/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/aarch64-linux-gnu/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/aarch64-linux-gnu/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/requires_cxx11.hpp:9, from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, from /usr/include/boost/shared_ptr.hpp:17, from /<>/src/pwiz/data/msdata/BinaryDataEncoder.hpp:30: /usr/include/boost/iterator.hpp:10:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/src/pwiz/utility/misc/Std.hpp:31, from /<>/src/pwiz/data/msdata/BinaryDataEncoder.cpp:38: /<>/src/pwiz/utility/misc/String.hpp: In lambda function: /<>/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] 87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); | ~~~~~~~~~~~~~~~~~~~~~^~~ /<>/src/pwiz/data/msdata/BinaryDataEncoder.cpp: In member function ‘void pwiz::msdata::BinaryDataEncoder::Impl::encode(const double*, size_t, std::string&, size_t*)’: /<>/src/pwiz/data/msdata/BinaryDataEncoder.cpp:305:37: warning: ‘byteCount’ may be used uninitialized [-Wmaybe-uninitialized] 305 | filterArray(byteBuffer, byteCount,compressed); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/pwiz/data/msdata/BinaryDataEncoder.cpp:131:12: note: ‘byteCount’ was declared here 131 | size_t byteCount; | ^~~~~~~~~ /<>/src/pwiz/data/msdata/BinaryDataEncoder.cpp:305:37: warning: ‘byteBuffer’ may be used uninitialized [-Wmaybe-uninitialized] 305 | filterArray(byteBuffer, byteCount,compressed); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/pwiz/data/msdata/BinaryDataEncoder.cpp:132:17: note: ‘byteBuffer’ was declared here 132 | const void* byteBuffer; | ^~~~~~~~~~ [ 68%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/DefaultReaderList.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/<>/obj-aarch64-linux-gnu/src -I/<>/src -I/<>/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/DefaultReaderList.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/DefaultReaderList.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/DefaultReaderList.cpp.o -c /<>/src/pwiz/data/msdata/DefaultReaderList.cpp In file included from /usr/include/boost/lexical_cast.hpp:26, from /<>/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /<>/src/pwiz/utility/misc/Environment.hpp:24, from /<>/src/pwiz/utility/misc/Std.hpp:29, from /<>/src/pwiz/data/msdata/DefaultReaderList.cpp:26: /usr/include/boost/iterator.hpp:10:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/src/pwiz/utility/misc/Std.hpp:31: /<>/src/pwiz/utility/misc/String.hpp: In lambda function: /<>/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] 87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); | ~~~~~~~~~~~~~~~~~~~~~^~~ In file included from /<>/src/pwiz/data/msdata/DefaultReaderList.cpp:28: /<>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)’: /<>/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter ‘name’ [-Wunused-parameter] 585 | virtual Status processingInstruction(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter ‘data’ [-Wunused-parameter] 586 | const std::string& data, | ~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter ‘position’ [-Wunused-parameter] 587 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)’: /<>/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter ‘name’ [-Wunused-parameter] 589 | virtual Status startElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter ‘attributes’ [-Wunused-parameter] 590 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter ‘position’ [-Wunused-parameter] 591 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)’: /<>/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter ‘name’ [-Wunused-parameter] 593 | virtual Status endElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter ‘position’ [-Wunused-parameter] 594 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)’: /<>/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter ‘text’ [-Wunused-parameter] 596 | virtual Status characters(const SAXParser::saxstring& text, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter ‘position’ [-Wunused-parameter] 597 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ In file included from /<>/src/pwiz/data/msdata/Reader.hpp:28, from /<>/src/pwiz/data/msdata/DefaultReaderList.hpp:29, from /<>/src/pwiz/data/msdata/DefaultReaderList.cpp:29: /<>/src/pwiz/utility/misc/IterationListener.hpp: In member function ‘virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)’: /<>/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter ‘updateMessage’ [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ In file included from /<>/src/pwiz/data/msdata/Reader.hpp:29: /<>/src/pwiz/utility/chemistry/MzMobilityWindow.hpp: In member function ‘bool pwiz::chemistry::MzMobilityWindow::mobilityValueInBounds(double) const’: /<>/src/pwiz/utility/chemistry/MzMobilityWindow.hpp:40:59: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] 40 | mobilityBounds.get().first < mobilityValue && mobilityValue < mobilityBounds.get().second; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/src/pwiz/data/msdata/MSData.hpp:29, from /<>/src/pwiz/data/msdata/Reader.hpp:30: /<>/src/pwiz/utility/misc/BinaryData.hpp: At global scope: /<>/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/13/bits/stl_iterator_base_funcs.h:66, from /usr/aarch64-linux-gnu/include/c++/13/string:47, from /usr/aarch64-linux-gnu/include/c++/13/stdexcept:39, from /<>/src/pwiz/utility/misc/Exception.hpp:28, from /<>/src/pwiz/utility/misc/Std.hpp:28: /usr/aarch64-linux-gnu/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/aarch64-linux-gnu/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /<>/src/pwiz/data/msdata/MSData.hpp: In member function ‘virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const’: /<>/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter ‘msg’ [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /<>/src/pwiz/data/msdata/MSData.hpp: In member function ‘virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const’: /<>/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter ‘msg’ [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /<>/src/pwiz/data/msdata/DefaultReaderList.hpp: In member function ‘virtual std::string pwiz::msdata::Reader_MS2::identify(const std::string&, const std::string&) const’: /<>/src/pwiz/data/msdata/DefaultReaderList.hpp:98:53: warning: unused parameter ‘filename’ [-Wunused-parameter] 98 | virtual std::string identify(const std::string& filename, const std::string& head) const { return ""; } | ~~~~~~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/data/msdata/DefaultReaderList.hpp:98:82: warning: unused parameter ‘head’ [-Wunused-parameter] 98 | virtual std::string identify(const std::string& filename, const std::string& head) const { return ""; } | ~~~~~~~~~~~~~~~~~~~^~~~ In file included from /<>/src/pwiz/data/msdata/DefaultReaderList.cpp:27: /<>/src/pwiz/data/msdata/DefaultReaderList.cpp: In function ‘void pwiz::msdata::{anonymous}::appendSourceFile(const std::string&, pwiz::msdata::MSData&)’: /<>/src/pwiz/data/msdata/DefaultReaderList.cpp:65:58: warning: ‘boost::filesystem::path boost::filesystem::path::leaf() const’ is deprecated: Use path::filename() instead [-Wdeprecated-declarations] 65 | sourceFile->id = sourceFile->name = BFS_STRING(p.leaf()); | ~~~~~~^~ /<>/src/pwiz/utility/misc/Filesystem.hpp:64:24: note: in definition of macro ‘BFS_STRING’ 64 | #define BFS_STRING(p) (p).string() | ^ In file included from /usr/include/boost/filesystem/operations.hpp:20, from /<>/src/pwiz/utility/misc/Filesystem.hpp:36: /usr/include/boost/filesystem/path.hpp:1127:10: note: declared here 1127 | path leaf() const { return filename(); } | ^~~~ /<>/src/pwiz/data/msdata/DefaultReaderList.cpp:66:67: warning: ‘boost::filesystem::path boost::filesystem::path::branch_path() const’ is deprecated: Use path::parent_path() instead [-Wdeprecated-declarations] 66 | sourceFile->location = "file:///" + BFS_COMPLETE(p.branch_path()).string(); | ~~~~~~~~~~~~~^~ /usr/include/boost/filesystem/path.hpp:1129:10: note: declared here 1129 | path branch_path() const { return parent_path(); } | ^~~~~~~~~~~ /<>/src/pwiz/data/msdata/DefaultReaderList.cpp: In function ‘void pwiz::msdata::{anonymous}::fillInCommonMetadata(const std::string&, pwiz::msdata::MSData&)’: /<>/src/pwiz/data/msdata/DefaultReaderList.cpp:107:44: warning: ‘std::string boost::filesystem::basename(const path&)’ is deprecated: Use path::stem() instead [-Wdeprecated-declarations] 107 | msd.id = msd.run.id = bfs::basename(filename); | ~~~~~~~~~~~~~^~~~~~~~~~ In file included from /<>/src/pwiz/utility/misc/Filesystem.hpp:37: /usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here 35 | inline std::string basename(const path& p) | ^~~~~~~~ /<>/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function ‘virtual std::string pwiz::msdata::Reader_mzML::identify(const std::string&, const std::string&) const’: /<>/src/pwiz/data/msdata/DefaultReaderList.cpp:126:68: warning: unused parameter ‘filename’ [-Wunused-parameter] 126 | PWIZ_API_DECL std::string Reader_mzML::identify(const std::string& filename, const std::string& head) const | ~~~~~~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function ‘virtual void pwiz::msdata::Reader_mzML::read(const std::string&, const std::string&, pwiz::msdata::MSData&, int, const pwiz::msdata::Reader::Config&) const’: /<>/src/pwiz/data/msdata/DefaultReaderList.cpp:133:57: warning: unused parameter ‘head’ [-Wunused-parameter] 133 | const std::string& head, | ~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/data/msdata/DefaultReaderList.cpp:136:52: warning: unused parameter ‘config’ [-Wunused-parameter] 136 | const Config& config) const | ~~~~~~~~~~~~~~^~~~~~ /<>/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function ‘virtual std::string pwiz::msdata::Reader_mzXML::identify(const std::string&, const std::string&) const’: /<>/src/pwiz/data/msdata/DefaultReaderList.cpp:201:69: warning: unused parameter ‘filename’ [-Wunused-parameter] 201 | PWIZ_API_DECL std::string Reader_mzXML::identify(const std::string& filename, const std::string& head) const | ~~~~~~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function ‘virtual void pwiz::msdata::Reader_mzXML::read(const std::string&, const std::string&, pwiz::msdata::MSData&, int, const pwiz::msdata::Reader::Config&) const’: /<>/src/pwiz/data/msdata/DefaultReaderList.cpp:216:58: warning: unused parameter ‘head’ [-Wunused-parameter] 216 | const std::string& head, | ~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/data/msdata/DefaultReaderList.cpp:219:53: warning: unused parameter ‘config’ [-Wunused-parameter] 219 | const Config& config) const | ~~~~~~~~~~~~~~^~~~~~ /<>/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function ‘virtual std::string pwiz::msdata::Reader_MGF::identify(const std::string&, const std::string&) const’: /<>/src/pwiz/data/msdata/DefaultReaderList.cpp:269:59: warning: ‘std::string boost::filesystem::extension(const path&)’ is deprecated: Use path::extension() instead [-Wdeprecated-declarations] 269 | return std::string(((bal::to_lower_copy(bfs::extension(filename)) == ".mgf"))?getType():""); | ~~~~~~~~~~~~~~^~~~~~~~~~ /usr/include/boost/filesystem/convenience.hpp:29:20: note: declared here 29 | inline std::string extension(const path& p) | ^~~~~~~~~ /<>/src/pwiz/data/msdata/DefaultReaderList.cpp:267:86: warning: unused parameter ‘head’ [-Wunused-parameter] 267 | PWIZ_API_DECL std::string Reader_MGF::identify(const string& filename, const string& head) const | ~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function ‘virtual void pwiz::msdata::Reader_MGF::read(const std::string&, const std::string&, pwiz::msdata::MSData&, int, const pwiz::msdata::Reader::Config&) const’: /<>/src/pwiz/data/msdata/DefaultReaderList.cpp:273:51: warning: unused parameter ‘head’ [-Wunused-parameter] 273 | const string& head, | ~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/data/msdata/DefaultReaderList.cpp:276:51: warning: unused parameter ‘config’ [-Wunused-parameter] 276 | const Config& config) const | ~~~~~~~~~~~~~~^~~~~~ /<>/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function ‘virtual void pwiz::msdata::Reader_MGF::read(const std::string&, const std::string&, std::vector >&, const pwiz::msdata::Reader::Config&) const’: /<>/src/pwiz/data/msdata/DefaultReaderList.cpp:296:51: warning: unused parameter ‘config’ [-Wunused-parameter] 296 | const Config& config) const | ~~~~~~~~~~~~~~^~~~~~ /<>/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function ‘virtual std::string pwiz::msdata::Reader_MSn::identify(const std::string&, const std::string&) const’: /<>/src/pwiz/data/msdata/DefaultReaderList.cpp:307:86: warning: unused parameter ‘head’ [-Wunused-parameter] 307 | PWIZ_API_DECL std::string Reader_MSn::identify(const string& filename, const string& head) const | ~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function ‘virtual void pwiz::msdata::Reader_MSn::read(const std::string&, const std::string&, pwiz::msdata::MSData&, int, const pwiz::msdata::Reader::Config&) const’: /<>/src/pwiz/data/msdata/DefaultReaderList.cpp:317:51: warning: unused parameter ‘head’ [-Wunused-parameter] 317 | const string& head, | ~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/data/msdata/DefaultReaderList.cpp:320:51: warning: unused parameter ‘config’ [-Wunused-parameter] 320 | const Config& config) const | ~~~~~~~~~~~~~~^~~~~~ /<>/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function ‘virtual void pwiz::msdata::Reader_MSn::read(const std::string&, const std::string&, std::vector >&, const pwiz::msdata::Reader::Config&) const’: /<>/src/pwiz/data/msdata/DefaultReaderList.cpp:353:51: warning: unused parameter ‘config’ [-Wunused-parameter] 353 | const Config& config) const | ~~~~~~~~~~~~~~^~~~~~ /<>/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function ‘virtual std::string pwiz::msdata::Reader_BTDX::identify(const std::string&, const std::string&) const’: /<>/src/pwiz/data/msdata/DefaultReaderList.cpp:364:63: warning: unused parameter ‘filename’ [-Wunused-parameter] 364 | PWIZ_API_DECL std::string Reader_BTDX::identify(const string& filename, const string& head) const | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function ‘virtual void pwiz::msdata::Reader_BTDX::read(const std::string&, const std::string&, pwiz::msdata::MSData&, int, const pwiz::msdata::Reader::Config&) const’: /<>/src/pwiz/data/msdata/DefaultReaderList.cpp:397:41: warning: ‘boost::filesystem::path boost::filesystem::path::leaf() const’ is deprecated: Use path::filename() instead [-Wdeprecated-declarations] 397 | sourceFile->name = BFS_STRING(p.leaf()); | ~~~~~~^~ /<>/src/pwiz/utility/misc/Filesystem.hpp:64:24: note: in definition of macro ‘BFS_STRING’ 64 | #define BFS_STRING(p) (p).string() | ^ /usr/include/boost/filesystem/path.hpp:1127:10: note: declared here 1127 | path leaf() const { return filename(); } | ^~~~ /<>/src/pwiz/data/msdata/DefaultReaderList.cpp:398:67: warning: ‘boost::filesystem::path boost::filesystem::path::branch_path() const’ is deprecated: Use path::parent_path() instead [-Wdeprecated-declarations] 398 | sourceFile->location = "file:///" + BFS_COMPLETE(p.branch_path()).string(); | ~~~~~~~~~~~~~^~ /usr/include/boost/filesystem/path.hpp:1129:10: note: declared here 1129 | path branch_path() const { return parent_path(); } | ^~~~~~~~~~~ /<>/src/pwiz/data/msdata/DefaultReaderList.cpp:401:46: warning: ‘std::string boost::filesystem::basename(const path&)’ is deprecated: Use path::stem() instead [-Wdeprecated-declarations] 401 | result.id = result.run.id = bfs::basename(filename); | ~~~~~~~~~~~~~^~~~~~~~~~ /usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here 35 | inline std::string basename(const path& p) | ^~~~~~~~ /<>/src/pwiz/data/msdata/DefaultReaderList.cpp:380:52: warning: unused parameter ‘head’ [-Wunused-parameter] 380 | const string& head, | ~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/data/msdata/DefaultReaderList.cpp:383:52: warning: unused parameter ‘config’ [-Wunused-parameter] 383 | const Config& config) const | ~~~~~~~~~~~~~~^~~~~~ /<>/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function ‘virtual void pwiz::msdata::Reader_BTDX::read(const std::string&, const std::string&, std::vector >&, const pwiz::msdata::Reader::Config&) const’: /<>/src/pwiz/data/msdata/DefaultReaderList.cpp:410:52: warning: unused parameter ‘config’ [-Wunused-parameter] 410 | const Config& config) const | ~~~~~~~~~~~~~~^~~~~~ /<>/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function ‘virtual std::string pwiz::msdata::Reader_mz5::identify(const std::string&, const std::string&) const’: /<>/src/pwiz/data/msdata/DefaultReaderList.cpp:429:62: warning: unused parameter ‘filename’ [-Wunused-parameter] 429 | PWIZ_API_DECL std::string Reader_mz5::identify(const string& filename, const string& head) const | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function ‘virtual void pwiz::msdata::Reader_mz5::read(const std::string&, const std::string&, pwiz::msdata::MSData&, int, const pwiz::msdata::Reader::Config&) const’: /<>/src/pwiz/data/msdata/DefaultReaderList.cpp:462:51: warning: unused parameter ‘filename’ [-Wunused-parameter] 462 | PWIZ_API_DECL void Reader_mz5::read(const string& filename, | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/data/msdata/DefaultReaderList.cpp:463:51: warning: unused parameter ‘head’ [-Wunused-parameter] 463 | const string& head, | ~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/data/msdata/DefaultReaderList.cpp:464:45: warning: unused parameter ‘result’ [-Wunused-parameter] 464 | MSData& result, | ~~~~~~~~^~~~~~ /<>/src/pwiz/data/msdata/DefaultReaderList.cpp:465:41: warning: unused parameter ‘runIndex’ [-Wunused-parameter] 465 | int runIndex, | ~~~~^~~~~~~~ /<>/src/pwiz/data/msdata/DefaultReaderList.cpp:466:51: warning: unused parameter ‘config’ [-Wunused-parameter] 466 | const Config& config) const | ~~~~~~~~~~~~~~^~~~~~ /<>/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function ‘virtual void pwiz::msdata::Reader_mz5::read(const std::string&, const std::string&, std::vector >&, const pwiz::msdata::Reader::Config&) const’: /<>/src/pwiz/data/msdata/DefaultReaderList.cpp:488:51: warning: unused parameter ‘config’ [-Wunused-parameter] 488 | const Config& config) const | ~~~~~~~~~~~~~~^~~~~~ /<>/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function ‘virtual void pwiz::msdata::Reader_mzMLb::read(const std::string&, const std::string&, pwiz::msdata::MSData&, int, const pwiz::msdata::Reader::Config&) const’: /<>/src/pwiz/data/msdata/DefaultReaderList.cpp:533:24: warning: unused parameter ‘head’ [-Wunused-parameter] 533 | const std::string& head, | ~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/data/msdata/DefaultReaderList.cpp:536:19: warning: unused parameter ‘config’ [-Wunused-parameter] 536 | const Config& config) const | ~~~~~~~~~~~~~~^~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/13/bits/stl_algobase.h:64, from /usr/aarch64-linux-gnu/include/c++/13/string:51: /usr/aarch64-linux-gnu/include/c++/13/bits/stl_pair.h: In instantiation of ‘constexpr std::pair::type>::__type, typename std::__strip_reference_wrapper::type>::__type> std::make_pair(_T1&&, _T2&&) [with _T1 = double; _T2 = double; typename __strip_reference_wrapper::type>::__type = double; typename decay<_Tp>::type = double; typename __strip_reference_wrapper::type>::__type = double; typename decay<_Tp2>::type = double]’: /<>/src/pwiz/utility/chemistry/MzMobilityWindow.hpp:34:98: required from here /usr/aarch64-linux-gnu/include/c++/13/bits/stl_pair.h:922:5: note: parameter passing for argument of type ‘std::pair’ when C++17 is enabled changed to match C++14 in GCC 10.1 922 | make_pair(_T1&& __x, _T2&& __y) | ^~~~~~~~~ [ 69%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/IO.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/<>/obj-aarch64-linux-gnu/src -I/<>/src -I/<>/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/IO.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/IO.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/IO.cpp.o -c /<>/src/pwiz/data/msdata/IO.cpp In file included from /<>/src/pwiz/data/msdata/MSData.hpp:29, from /<>/src/pwiz/data/msdata/IO.hpp:29, from /<>/src/pwiz/data/msdata/IO.cpp:26: /<>/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/13/bits/stl_algobase.h:65, from /usr/aarch64-linux-gnu/include/c++/13/algorithm:60, from /<>/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/aarch64-linux-gnu/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/aarch64-linux-gnu/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /<>/src/pwiz/data/msdata/MSData.hpp: In member function ‘virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const’: /<>/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter ‘msg’ [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /<>/src/pwiz/data/msdata/MSData.hpp: In member function ‘virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const’: /<>/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter ‘msg’ [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ In file included from /<>/src/pwiz/data/msdata/IO.hpp:32: /<>/src/pwiz/utility/misc/IterationListener.hpp: In member function ‘virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)’: /<>/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter ‘updateMessage’ [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ In file included from /<>/src/pwiz/data/msdata/IO.cpp:28: /<>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)’: /<>/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter ‘name’ [-Wunused-parameter] 585 | virtual Status processingInstruction(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter ‘data’ [-Wunused-parameter] 586 | const std::string& data, | ~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter ‘position’ [-Wunused-parameter] 587 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)’: /<>/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter ‘name’ [-Wunused-parameter] 589 | virtual Status startElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter ‘attributes’ [-Wunused-parameter] 590 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter ‘position’ [-Wunused-parameter] 591 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)’: /<>/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter ‘name’ [-Wunused-parameter] 593 | virtual Status endElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter ‘position’ [-Wunused-parameter] 594 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)’: /<>/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter ‘text’ [-Wunused-parameter] 596 | virtual Status characters(const SAXParser::saxstring& text, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter ‘position’ [-Wunused-parameter] 597 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ In file included from /<>/src/pwiz/utility/misc/Filesystem.hpp:34, from /<>/src/pwiz/data/msdata/IO.cpp:29: /<>/src/pwiz/utility/misc/String.hpp: In lambda function: /<>/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] 87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); | ~~~~~~~~~~~~~~~~~~~~~^~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /<>/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /<>/src/pwiz/data/common/ParamTypes.hpp:29, from /<>/src/pwiz/data/msdata/MSData.hpp:30: /usr/include/boost/iterator.hpp: At global scope: /usr/include/boost/iterator.hpp:10:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ /<>/src/pwiz/data/msdata/IO.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerCV::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)’: /<>/src/pwiz/data/msdata/IO.cpp:85:47: warning: unused parameter ‘position’ [-Wunused-parameter] 85 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/data/msdata/IO.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerUserParam::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)’: /<>/src/pwiz/data/msdata/IO.cpp:136:47: warning: unused parameter ‘position’ [-Wunused-parameter] 136 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/data/msdata/IO.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerCVParam::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)’: /<>/src/pwiz/data/msdata/IO.cpp:195:47: warning: unused parameter ‘position’ [-Wunused-parameter] 195 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/data/msdata/IO.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerParamContainer::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)’: /<>/src/pwiz/data/msdata/IO.cpp:267:47: warning: unused parameter ‘position’ [-Wunused-parameter] 267 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/data/msdata/IO.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerFileDescription::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)’: /<>/src/pwiz/data/msdata/IO.cpp:504:51: warning: unused parameter ‘attributes’ [-Wunused-parameter] 504 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /<>/src/pwiz/data/msdata/IO.cpp:505:47: warning: unused parameter ‘position’ [-Wunused-parameter] 505 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/data/msdata/IO.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerComponentList::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)’: /<>/src/pwiz/data/msdata/IO.cpp:697:51: warning: unused parameter ‘attributes’ [-Wunused-parameter] 697 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /<>/src/pwiz/data/msdata/IO.cpp:698:47: warning: unused parameter ‘position’ [-Wunused-parameter] 698 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/data/msdata/IO.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerDataProcessing::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)’: /<>/src/pwiz/data/msdata/IO.cpp:970:47: warning: unused parameter ‘position’ [-Wunused-parameter] 970 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/data/msdata/IO.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerScanSettings::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)’: /<>/src/pwiz/data/msdata/IO.cpp:1083:47: warning: unused parameter ‘position’ [-Wunused-parameter] 1083 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/data/msdata/IO.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerProduct::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)’: /<>/src/pwiz/data/msdata/IO.cpp:1359:51: warning: unused parameter ‘attributes’ [-Wunused-parameter] 1359 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /<>/src/pwiz/data/msdata/IO.cpp:1360:47: warning: unused parameter ‘position’ [-Wunused-parameter] 1360 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/data/msdata/IO.cpp: In function ‘void pwiz::msdata::IO::writeMzMLbExtra(boost::iostreams::stream*, std::string&, size_t&, const std::string&, pwiz::minimxml::XMLWriter&, const BinaryDataArrayType&, const pwiz::msdata::BinaryDataEncoder::Config&) [with BinaryDataArrayType = pwiz::msdata::BinaryDataArray; std::string = std::__cxx11::basic_string; size_t = long unsigned int]’: /<>/src/pwiz/data/msdata/IO.cpp:1693:47: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 1693 | for (int i = 1; i < float_data.size(); i++) | ~~^~~~~~~~~~~~~~~~~~~ /<>/src/pwiz/data/msdata/IO.cpp:1712:51: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 1712 | for (int i = 2; i < float_data.size(); i++) | ~~^~~~~~~~~~~~~~~~~~~ /<>/src/pwiz/data/msdata/IO.cpp:1774:43: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 1774 | for (int i = 1; i < double_data.size(); i++) | ~~^~~~~~~~~~~~~~~~~~~~ /<>/src/pwiz/data/msdata/IO.cpp:1793:47: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 1793 | for (int i = 2; i < double_data.size(); i++) | ~~^~~~~~~~~~~~~~~~~~~~ /<>/src/pwiz/data/msdata/IO.cpp:1627:142: warning: unused parameter ‘writer’ [-Wunused-parameter] 1627 | void writeMzMLbExtra(stream* mzMLb_os, string& dataset, size_t& offset, const string& encoded, XMLWriter& writer, const BinaryDataArray& binaryDataArray, const BinaryDataEncoder::Config& usedConfig) | ~~~~~~~~~~~^~~~~~ /<>/src/pwiz/data/msdata/IO.cpp: In function ‘void pwiz::msdata::IO::writeMzMLbExtra(boost::iostreams::stream*, std::string&, size_t&, const std::string&, pwiz::minimxml::XMLWriter&, const BinaryDataArrayType&, const pwiz::msdata::BinaryDataEncoder::Config&) [with BinaryDataArrayType = pwiz::msdata::IntegerDataArray; std::string = std::__cxx11::basic_string; size_t = long unsigned int]’: /<>/src/pwiz/data/msdata/IO.cpp:1820:143: warning: unused parameter ‘writer’ [-Wunused-parameter] 1820 | void writeMzMLbExtra(stream* mzMLb_os, string& dataset, size_t& offset, const string& encoded, XMLWriter& writer, const IntegerDataArray& binaryDataArray, const BinaryDataEncoder::Config& usedConfig) | ~~~~~~~~~~~^~~~~~ /<>/src/pwiz/data/msdata/IO.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerSpectrum::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)’: /<>/src/pwiz/data/msdata/IO.cpp:2639:35: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] 2639 | else if (version == 1 && name == "acquisitionList" /* mzML 1.0 */ || name == "scanList") | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/pwiz/data/msdata/IO.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerSpectrumListSimple::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)’: /<>/src/pwiz/data/msdata/IO.cpp:2955:47: warning: unused parameter ‘position’ [-Wunused-parameter] 2955 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/data/msdata/IO.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerChromatogramListSimple::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)’: /<>/src/pwiz/data/msdata/IO.cpp:3085:47: warning: unused parameter ‘position’ [-Wunused-parameter] 3085 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/data/msdata/IO.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerMSData::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)’: /<>/src/pwiz/data/msdata/IO.cpp:3415:31: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] 3415 | else if (version == 1 && name == "acquisitionSettings" /* mzML 1.0 */ || | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/pwiz/data/msdata/IO.cpp:3333:47: warning: unused parameter ‘position’ [-Wunused-parameter] 3333 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ [ 70%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Index_mzML.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/<>/obj-aarch64-linux-gnu/src -I/<>/src -I/<>/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Index_mzML.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Index_mzML.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Index_mzML.cpp.o -c /<>/src/pwiz/data/msdata/Index_mzML.cpp In file included from /<>/src/pwiz/data/msdata/MSData.hpp:29, from /<>/src/pwiz/data/msdata/Index_mzML.hpp:28, from /<>/src/pwiz/data/msdata/Index_mzML.cpp:24: /<>/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/13/bits/stl_algobase.h:65, from /usr/aarch64-linux-gnu/include/c++/13/algorithm:60, from /<>/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/aarch64-linux-gnu/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/aarch64-linux-gnu/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /<>/src/pwiz/data/msdata/MSData.hpp: In member function ‘virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const’: /<>/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter ‘msg’ [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /<>/src/pwiz/data/msdata/MSData.hpp: In member function ‘virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const’: /<>/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter ‘msg’ [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /<>/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /<>/src/pwiz/data/common/ParamTypes.hpp:29, from /<>/src/pwiz/data/msdata/MSData.hpp:30: /usr/include/boost/iterator.hpp: At global scope: /usr/include/boost/iterator.hpp:10:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/src/pwiz/utility/misc/Std.hpp:31, from /<>/src/pwiz/data/msdata/Index_mzML.cpp:25: /<>/src/pwiz/utility/misc/String.hpp: In lambda function: /<>/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] 87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); | ~~~~~~~~~~~~~~~~~~~~~^~~ In file included from /<>/src/pwiz/data/msdata/Index_mzML.cpp:26: /<>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)’: /<>/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter ‘name’ [-Wunused-parameter] 585 | virtual Status processingInstruction(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter ‘data’ [-Wunused-parameter] 586 | const std::string& data, | ~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter ‘position’ [-Wunused-parameter] 587 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)’: /<>/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter ‘name’ [-Wunused-parameter] 589 | virtual Status startElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter ‘attributes’ [-Wunused-parameter] 590 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter ‘position’ [-Wunused-parameter] 591 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)’: /<>/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter ‘name’ [-Wunused-parameter] 593 | virtual Status endElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter ‘position’ [-Wunused-parameter] 594 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)’: /<>/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter ‘text’ [-Wunused-parameter] 596 | virtual Status characters(const SAXParser::saxstring& text, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter ‘position’ [-Wunused-parameter] 597 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ In file included from /<>/src/pwiz/data/msdata/IO.hpp:32, from /<>/src/pwiz/data/msdata/Index_mzML.cpp:28: /<>/src/pwiz/utility/misc/IterationListener.hpp: In member function ‘virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)’: /<>/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter ‘updateMessage’ [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /<>/src/pwiz/data/msdata/Index_mzML.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexListOffset::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)’: /<>/src/pwiz/data/msdata/Index_mzML.cpp:86:51: warning: unused parameter ‘attributes’ [-Wunused-parameter] 86 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /<>/src/pwiz/data/msdata/Index_mzML.cpp:87:47: warning: unused parameter ‘position’ [-Wunused-parameter] 87 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/data/msdata/Index_mzML.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexListOffset::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)’: /<>/src/pwiz/data/msdata/Index_mzML.cpp:95:45: warning: unused parameter ‘position’ [-Wunused-parameter] 95 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/data/msdata/Index_mzML.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerOffset::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)’: /<>/src/pwiz/data/msdata/Index_mzML.cpp:120:47: warning: unused parameter ‘position’ [-Wunused-parameter] 120 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/data/msdata/Index_mzML.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerOffset::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)’: /<>/src/pwiz/data/msdata/Index_mzML.cpp:165:45: warning: unused parameter ‘position’ [-Wunused-parameter] 165 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/data/msdata/Index_mzML.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexList::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)’: /<>/src/pwiz/data/msdata/Index_mzML.cpp:201:47: warning: unused parameter ‘position’ [-Wunused-parameter] 201 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ [ 71%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSData.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/<>/obj-aarch64-linux-gnu/src -I/<>/src -I/<>/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSData.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSData.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSData.cpp.o -c /<>/src/pwiz/data/msdata/MSData.cpp In file included from /<>/src/pwiz/data/msdata/MSData.hpp:29, from /<>/src/pwiz/data/msdata/MSData.cpp:25: /<>/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/13/bits/stl_algobase.h:65, from /usr/aarch64-linux-gnu/include/c++/13/algorithm:60, from /<>/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/aarch64-linux-gnu/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/aarch64-linux-gnu/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /<>/src/pwiz/data/msdata/MSData.hpp: In member function ‘virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const’: /<>/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter ‘msg’ [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /<>/src/pwiz/data/msdata/MSData.hpp: In member function ‘virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const’: /<>/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter ‘msg’ [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /<>/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /<>/src/pwiz/data/common/ParamTypes.hpp:29, from /<>/src/pwiz/data/msdata/MSData.hpp:30: /usr/include/boost/iterator.hpp: At global scope: /usr/include/boost/iterator.hpp:10:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/src/pwiz/utility/misc/Std.hpp:31, from /<>/src/pwiz/data/msdata/MSData.cpp:26: /<>/src/pwiz/utility/misc/String.hpp: In lambda function: /<>/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] 87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); | ~~~~~~~~~~~~~~~~~~~~~^~~ /<>/src/pwiz/data/msdata/MSData.cpp: In member function ‘virtual size_t pwiz::msdata::SpectrumList::findAbbreviated(const std::string&, char) const’: /<>/src/pwiz/data/msdata/MSData.cpp:1121:21: warning: comparison of unsigned expression in ‘>= 0’ is always true [-Wtype-limits] 1121 | if ((result >= 0 && result < size()) || s == 0) | ~~~~~~~^~~~ /<>/src/pwiz/data/msdata/MSData.cpp: In member function ‘virtual pwiz::msdata::SpectrumPtr pwiz::msdata::SpectrumListSimple::spectrum(size_t, bool) const’: /<>/src/pwiz/data/msdata/MSData.cpp:1232:75: warning: unused parameter ‘getBinaryData’ [-Wunused-parameter] 1232 | PWIZ_API_DECL SpectrumPtr SpectrumListSimple::spectrum(size_t index, bool getBinaryData) const | ~~~~~^~~~~~~~~~~~~ /<>/src/pwiz/data/msdata/MSData.cpp: In member function ‘virtual pwiz::msdata::ChromatogramPtr pwiz::msdata::ChromatogramListSimple::chromatogram(size_t, bool) const’: /<>/src/pwiz/data/msdata/MSData.cpp:1299:87: warning: unused parameter ‘getBinaryData’ [-Wunused-parameter] 1299 | PWIZ_API_DECL ChromatogramPtr ChromatogramListSimple::chromatogram(size_t index, bool getBinaryData) const | ~~~~~^~~~~~~~~~~~~ /<>/src/pwiz/data/msdata/MSData.cpp: In function ‘std::string pwiz::msdata::id::translateNativeIDToScanNumber(pwiz::cv::CVID, const std::string&)’: /<>/src/pwiz/data/msdata/MSData.cpp:582:13: warning: this statement may fall through [-Wimplicit-fallthrough=] 582 | if (id.find("controllerType=0 controllerNumber=1") != 0) | ^~ /<>/src/pwiz/data/msdata/MSData.cpp:587:9: note: here 587 | case MS_Bruker_Agilent_YEP_nativeID_format: | ^~~~ [ 73%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSDataFile.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/<>/obj-aarch64-linux-gnu/src -I/<>/src -I/<>/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSDataFile.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSDataFile.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSDataFile.cpp.o -c /<>/src/pwiz/data/msdata/MSDataFile.cpp In file included from /<>/src/pwiz/data/msdata/MSData.hpp:29, from /<>/src/pwiz/data/msdata/MSDataFile.hpp:29, from /<>/src/pwiz/data/msdata/MSDataFile.cpp:26: /<>/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/13/bits/stl_algobase.h:65, from /usr/aarch64-linux-gnu/include/c++/13/algorithm:60, from /<>/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/aarch64-linux-gnu/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/aarch64-linux-gnu/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /<>/src/pwiz/data/msdata/MSData.hpp: In member function ‘virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const’: /<>/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter ‘msg’ [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /<>/src/pwiz/data/msdata/MSData.hpp: In member function ‘virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const’: /<>/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter ‘msg’ [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ In file included from /<>/src/pwiz/data/msdata/Reader.hpp:28, from /<>/src/pwiz/data/msdata/MSDataFile.hpp:30: /<>/src/pwiz/utility/misc/IterationListener.hpp: In member function ‘virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)’: /<>/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter ‘updateMessage’ [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ In file included from /<>/src/pwiz/data/msdata/Reader.hpp:29: /<>/src/pwiz/utility/chemistry/MzMobilityWindow.hpp: In member function ‘bool pwiz::chemistry::MzMobilityWindow::mobilityValueInBounds(double) const’: /<>/src/pwiz/utility/chemistry/MzMobilityWindow.hpp:40:59: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] 40 | mobilityBounds.get().first < mobilityValue && mobilityValue < mobilityBounds.get().second; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/src/pwiz/data/msdata/MSDataFile.cpp:39: /<>/src/pwiz/data/msdata/DefaultReaderList.hpp: In member function ‘virtual std::string pwiz::msdata::Reader_MS2::identify(const std::string&, const std::string&) const’: /<>/src/pwiz/data/msdata/DefaultReaderList.hpp:98:53: warning: unused parameter ‘filename’ [-Wunused-parameter] 98 | virtual std::string identify(const std::string& filename, const std::string& head) const { return ""; } | ~~~~~~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/data/msdata/DefaultReaderList.hpp:98:82: warning: unused parameter ‘head’ [-Wunused-parameter] 98 | virtual std::string identify(const std::string& filename, const std::string& head) const { return ""; } | ~~~~~~~~~~~~~~~~~~~^~~~ In file included from /<>/src/pwiz/utility/misc/Filesystem.hpp:34, from /<>/src/pwiz/data/msdata/MSDataFile.cpp:40: /<>/src/pwiz/utility/misc/String.hpp: In lambda function: /<>/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] 87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); | ~~~~~~~~~~~~~~~~~~~~~^~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /<>/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /<>/src/pwiz/data/common/ParamTypes.hpp:29, from /<>/src/pwiz/data/msdata/MSData.hpp:30: /usr/include/boost/iterator.hpp: At global scope: /usr/include/boost/iterator.hpp:10:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/13/bits/stl_algobase.h:64: /usr/aarch64-linux-gnu/include/c++/13/bits/stl_pair.h: In instantiation of ‘constexpr std::pair::type>::__type, typename std::__strip_reference_wrapper::type>::__type> std::make_pair(_T1&&, _T2&&) [with _T1 = double; _T2 = double; typename __strip_reference_wrapper::type>::__type = double; typename decay<_Tp>::type = double; typename __strip_reference_wrapper::type>::__type = double; typename decay<_Tp2>::type = double]’: /<>/src/pwiz/utility/chemistry/MzMobilityWindow.hpp:34:98: required from here /usr/aarch64-linux-gnu/include/c++/13/bits/stl_pair.h:922:5: note: parameter passing for argument of type ‘std::pair’ when C++17 is enabled changed to match C++14 in GCC 10.1 922 | make_pair(_T1&& __x, _T2&& __y) | ^~~~~~~~~ [ 74%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Reader.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/<>/obj-aarch64-linux-gnu/src -I/<>/src -I/<>/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Reader.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Reader.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Reader.cpp.o -c /<>/src/pwiz/data/msdata/Reader.cpp In file included from /<>/src/pwiz/data/msdata/Reader.hpp:28, from /<>/src/pwiz/data/msdata/Reader.cpp:26: /<>/src/pwiz/utility/misc/IterationListener.hpp: In member function ‘virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)’: /<>/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter ‘updateMessage’ [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ In file included from /<>/src/pwiz/data/msdata/Reader.hpp:29: /<>/src/pwiz/utility/chemistry/MzMobilityWindow.hpp: In member function ‘bool pwiz::chemistry::MzMobilityWindow::mobilityValueInBounds(double) const’: /<>/src/pwiz/utility/chemistry/MzMobilityWindow.hpp:40:59: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] 40 | mobilityBounds.get().first < mobilityValue && mobilityValue < mobilityBounds.get().second; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/src/pwiz/data/msdata/MSData.hpp:29, from /<>/src/pwiz/data/msdata/Reader.hpp:30: /<>/src/pwiz/utility/misc/BinaryData.hpp: At global scope: /<>/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/13/bits/stl_construct.h:61, from /usr/aarch64-linux-gnu/include/c++/13/bits/stl_tempbuf.h:61, from /usr/aarch64-linux-gnu/include/c++/13/memory:66, from /usr/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35, from /usr/include/boost/smart_ptr/detail/shared_count.hpp:27, from /usr/include/boost/smart_ptr/shared_ptr.hpp:18, from /usr/include/boost/shared_ptr.hpp:17, from /<>/src/pwiz/utility/misc/IterationListener.hpp:29: /usr/aarch64-linux-gnu/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/aarch64-linux-gnu/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /<>/src/pwiz/data/msdata/MSData.hpp: In member function ‘virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const’: /<>/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter ‘msg’ [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /<>/src/pwiz/data/msdata/MSData.hpp: In member function ‘virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const’: /<>/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter ‘msg’ [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ In file included from /<>/src/pwiz/utility/misc/Filesystem.hpp:34, from /<>/src/pwiz/data/msdata/Reader.cpp:27: /<>/src/pwiz/utility/misc/String.hpp: In lambda function: /<>/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] 87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); | ~~~~~~~~~~~~~~~~~~~~~^~~ In file included from /usr/include/boost/smart_ptr/detail/requires_cxx11.hpp:9, from /usr/include/boost/smart_ptr/shared_ptr.hpp:17: /usr/include/boost/iterator.hpp: At global scope: /usr/include/boost/iterator.hpp:10:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ /<>/src/pwiz/data/msdata/Reader.cpp: In member function ‘virtual void pwiz::msdata::Reader::readIds(const std::string&, const std::string&, std::vector >&, const Config&) const’: /<>/src/pwiz/data/msdata/Reader.cpp:80:119: warning: unused parameter ‘config’ [-Wunused-parameter] 80 | PWIZ_API_DECL void Reader::readIds(const string& filename, const string& head, vector& results, const Config& config) const | ~~~~~~~~~~~~~~^~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/13/bits/stl_tempbuf.h:62: /usr/aarch64-linux-gnu/include/c++/13/bits/stl_pair.h: In instantiation of ‘constexpr std::pair::type>::__type, typename std::__strip_reference_wrapper::type>::__type> std::make_pair(_T1&&, _T2&&) [with _T1 = double; _T2 = double; typename __strip_reference_wrapper::type>::__type = double; typename decay<_Tp>::type = double; typename __strip_reference_wrapper::type>::__type = double; typename decay<_Tp2>::type = double]’: /<>/src/pwiz/utility/chemistry/MzMobilityWindow.hpp:34:98: required from here /usr/aarch64-linux-gnu/include/c++/13/bits/stl_pair.h:922:5: note: parameter passing for argument of type ‘std::pair’ when C++17 is enabled changed to match C++14 in GCC 10.1 922 | make_pair(_T1&& __x, _T2&& __y) | ^~~~~~~~~ [ 75%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_MGF.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/<>/obj-aarch64-linux-gnu/src -I/<>/src -I/<>/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_MGF.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_MGF.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_MGF.cpp.o -c /<>/src/pwiz/data/msdata/Serializer_MGF.cpp In file included from /<>/src/pwiz/data/msdata/MSData.hpp:29, from /<>/src/pwiz/data/msdata/Serializer_MGF.hpp:27, from /<>/src/pwiz/data/msdata/Serializer_MGF.cpp:25: /<>/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/13/bits/stl_algobase.h:65, from /usr/aarch64-linux-gnu/include/c++/13/algorithm:60, from /<>/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/aarch64-linux-gnu/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/aarch64-linux-gnu/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /<>/src/pwiz/data/msdata/MSData.hpp: In member function ‘virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const’: /<>/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter ‘msg’ [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /<>/src/pwiz/data/msdata/MSData.hpp: In member function ‘virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const’: /<>/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter ‘msg’ [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ In file included from /<>/src/pwiz/data/msdata/Serializer_MGF.hpp:29: /<>/src/pwiz/utility/misc/IterationListener.hpp: In member function ‘virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)’: /<>/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter ‘updateMessage’ [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ In file included from /<>/src/pwiz/utility/misc/Filesystem.hpp:34, from /<>/src/pwiz/data/msdata/Serializer_MGF.cpp:27: /<>/src/pwiz/utility/misc/String.hpp: In lambda function: /<>/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] 87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); | ~~~~~~~~~~~~~~~~~~~~~^~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /<>/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /<>/src/pwiz/data/common/ParamTypes.hpp:29, from /<>/src/pwiz/data/msdata/MSData.hpp:30: /usr/include/boost/iterator.hpp: At global scope: /usr/include/boost/iterator.hpp:10:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ /<>/src/pwiz/data/msdata/Serializer_MGF.cpp: In member function ‘void pwiz::msdata::Serializer_MGF::Impl::write(std::ostream&, const pwiz::msdata::MSData&, const pwiz::util::IterationListenerRegistry*, bool, bool) const’: /<>/src/pwiz/data/msdata/Serializer_MGF.cpp:73:61: warning: ‘std::string boost::filesystem::basename(const path&)’ is deprecated: Use path::stem() instead [-Wdeprecated-declarations] 73 | string thermoBasename = titleIsThermoDTA ? bfs::basename(thermoFilename) : ""; | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ In file included from /<>/src/pwiz/utility/misc/Filesystem.hpp:37: /usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here 35 | inline std::string basename(const path& p) | ^~~~~~~~ [ 76%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_MSn.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/<>/obj-aarch64-linux-gnu/src -I/<>/src -I/<>/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_MSn.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_MSn.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_MSn.cpp.o -c /<>/src/pwiz/data/msdata/Serializer_MSn.cpp In file included from /<>/src/pwiz/data/msdata/MSData.hpp:29, from /<>/src/pwiz/data/msdata/Serializer_MSn.hpp:26, from /<>/src/pwiz/data/msdata/Serializer_MSn.cpp:25: /<>/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/13/bits/stl_algobase.h:65, from /usr/aarch64-linux-gnu/include/c++/13/algorithm:60, from /<>/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/aarch64-linux-gnu/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/aarch64-linux-gnu/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /<>/src/pwiz/data/msdata/MSData.hpp: In member function ‘virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const’: /<>/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter ‘msg’ [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /<>/src/pwiz/data/msdata/MSData.hpp: In member function ‘virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const’: /<>/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter ‘msg’ [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ In file included from /<>/src/pwiz/data/msdata/Serializer_MSn.hpp:28: /<>/src/pwiz/utility/misc/IterationListener.hpp: In member function ‘virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)’: /<>/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter ‘updateMessage’ [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ In file included from /<>/src/pwiz/utility/misc/Filesystem.hpp:34, from /<>/src/pwiz/data/msdata/Serializer_MSn.cpp:28: /<>/src/pwiz/utility/misc/String.hpp: In lambda function: /<>/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] 87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); | ~~~~~~~~~~~~~~~~~~~~~^~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /<>/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /<>/src/pwiz/data/common/ParamTypes.hpp:29, from /<>/src/pwiz/data/msdata/MSData.hpp:30: /usr/include/boost/iterator.hpp: At global scope: /usr/include/boost/iterator.hpp:10:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ /<>/src/pwiz/data/msdata/Serializer_MSn.cpp: In member function ‘void pwiz::msdata::Serializer_MSn::write(std::ostream&, const pwiz::msdata::MSData&, const pwiz::util::IterationListenerRegistry*, bool, bool) const’: /<>/src/pwiz/data/msdata/Serializer_MSn.cpp:552:10: warning: unused parameter ‘useWorkerThreads’ [-Wunused-parameter] 552 | bool useWorkerThreads, bool continueOnError) const | ~~~~~^~~~~~~~~~~~~~~~ /<>/src/pwiz/data/msdata/Serializer_MSn.cpp:552:33: warning: unused parameter ‘continueOnError’ [-Wunused-parameter] 552 | bool useWorkerThreads, bool continueOnError) const | ~~~~~^~~~~~~~~~~~~~~ [ 78%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_mzML.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/<>/obj-aarch64-linux-gnu/src -I/<>/src -I/<>/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_mzML.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_mzML.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_mzML.cpp.o -c /<>/src/pwiz/data/msdata/Serializer_mzML.cpp In file included from /<>/src/pwiz/data/msdata/MSData.hpp:29, from /<>/src/pwiz/data/msdata/Serializer_mzML.hpp:29, from /<>/src/pwiz/data/msdata/Serializer_mzML.cpp:26: /<>/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/13/bits/stl_algobase.h:65, from /usr/aarch64-linux-gnu/include/c++/13/algorithm:60, from /<>/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/aarch64-linux-gnu/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/aarch64-linux-gnu/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /<>/src/pwiz/data/msdata/MSData.hpp: In member function ‘virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const’: /<>/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter ‘msg’ [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /<>/src/pwiz/data/msdata/MSData.hpp: In member function ‘virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const’: /<>/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter ‘msg’ [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ In file included from /<>/src/pwiz/data/msdata/Serializer_mzML.hpp:31: /<>/src/pwiz/utility/misc/IterationListener.hpp: In member function ‘virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)’: /<>/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter ‘updateMessage’ [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ In file included from /<>/src/pwiz/data/msdata/Serializer_mzML.cpp:32: /<>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)’: /<>/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter ‘name’ [-Wunused-parameter] 585 | virtual Status processingInstruction(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter ‘data’ [-Wunused-parameter] 586 | const std::string& data, | ~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter ‘position’ [-Wunused-parameter] 587 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)’: /<>/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter ‘name’ [-Wunused-parameter] 589 | virtual Status startElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter ‘attributes’ [-Wunused-parameter] 590 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter ‘position’ [-Wunused-parameter] 591 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)’: /<>/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter ‘name’ [-Wunused-parameter] 593 | virtual Status endElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter ‘position’ [-Wunused-parameter] 594 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)’: /<>/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter ‘text’ [-Wunused-parameter] 596 | virtual Status characters(const SAXParser::saxstring& text, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter ‘position’ [-Wunused-parameter] 597 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /<>/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /<>/src/pwiz/data/common/ParamTypes.hpp:29, from /<>/src/pwiz/data/msdata/MSData.hpp:30: /usr/include/boost/iterator.hpp: At global scope: /usr/include/boost/iterator.hpp:10:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/src/pwiz/utility/misc/Std.hpp:31, from /<>/src/pwiz/data/msdata/Serializer_mzML.cpp:33: /<>/src/pwiz/utility/misc/String.hpp: In lambda function: /<>/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] 87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); | ~~~~~~~~~~~~~~~~~~~~~^~~ /<>/src/pwiz/data/msdata/Serializer_mzML.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::HandlerIndexedMZML::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)’: /<>/src/pwiz/data/msdata/Serializer_mzML.cpp:278:51: warning: unused parameter ‘attributes’ [-Wunused-parameter] 278 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /<>/src/pwiz/data/msdata/Serializer_mzML.cpp:279:47: warning: unused parameter ‘position’ [-Wunused-parameter] 279 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ [ 79%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_mzXML.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/<>/obj-aarch64-linux-gnu/src -I/<>/src -I/<>/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_mzXML.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_mzXML.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_mzXML.cpp.o -c /<>/src/pwiz/data/msdata/Serializer_mzXML.cpp In file included from /<>/src/pwiz/data/msdata/MSData.hpp:29, from /<>/src/pwiz/data/msdata/Serializer_mzXML.hpp:29, from /<>/src/pwiz/data/msdata/Serializer_mzXML.cpp:25: /<>/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/13/bits/stl_algobase.h:65, from /usr/aarch64-linux-gnu/include/c++/13/algorithm:60, from /<>/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/aarch64-linux-gnu/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/aarch64-linux-gnu/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /<>/src/pwiz/data/msdata/MSData.hpp: In member function ‘virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const’: /<>/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter ‘msg’ [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /<>/src/pwiz/data/msdata/MSData.hpp: In member function ‘virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const’: /<>/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter ‘msg’ [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ In file included from /<>/src/pwiz/data/msdata/Serializer_mzXML.hpp:31: /<>/src/pwiz/utility/misc/IterationListener.hpp: In member function ‘virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)’: /<>/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter ‘updateMessage’ [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ In file included from /<>/src/pwiz/data/msdata/Serializer_mzXML.cpp:32: /<>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)’: /<>/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter ‘name’ [-Wunused-parameter] 585 | virtual Status processingInstruction(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter ‘data’ [-Wunused-parameter] 586 | const std::string& data, | ~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter ‘position’ [-Wunused-parameter] 587 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)’: /<>/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter ‘name’ [-Wunused-parameter] 589 | virtual Status startElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter ‘attributes’ [-Wunused-parameter] 590 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter ‘position’ [-Wunused-parameter] 591 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)’: /<>/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter ‘name’ [-Wunused-parameter] 593 | virtual Status endElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter ‘position’ [-Wunused-parameter] 594 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)’: /<>/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter ‘text’ [-Wunused-parameter] 596 | virtual Status characters(const SAXParser::saxstring& text, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter ‘position’ [-Wunused-parameter] 597 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ In file included from /<>/src/pwiz/utility/misc/Filesystem.hpp:34, from /<>/src/pwiz/data/msdata/Serializer_mzXML.cpp:33: /<>/src/pwiz/utility/misc/String.hpp: In lambda function: /<>/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] 87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); | ~~~~~~~~~~~~~~~~~~~~~^~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /<>/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /<>/src/pwiz/data/common/ParamTypes.hpp:29, from /<>/src/pwiz/data/msdata/MSData.hpp:30: /usr/include/boost/iterator.hpp: At global scope: /usr/include/boost/iterator.hpp:10:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ /<>/src/pwiz/data/msdata/Serializer_mzXML.cpp: In function ‘std::string pwiz::msdata::{anonymous}::translate_SourceFileTypeToRunID(const pwiz::msdata::SourceFile&, pwiz::cv::CVID)’: /<>/src/pwiz/data/msdata/Serializer_mzXML.cpp:149:61: warning: ‘std::string boost::filesystem::extension(const path&)’ is deprecated: Use path::extension() instead [-Wdeprecated-declarations] 149 | string nameExtension = bal::to_lower_copy(bfs::extension(sf.name)); | ~~~~~~~~~~~~~~^~~~~~~~~ In file included from /<>/src/pwiz/utility/misc/Filesystem.hpp:37: /usr/include/boost/filesystem/convenience.hpp:29:20: note: declared here 29 | inline std::string extension(const path& p) | ^~~~~~~~~ /<>/src/pwiz/data/msdata/Serializer_mzXML.cpp:150:65: warning: ‘std::string boost::filesystem::extension(const path&)’ is deprecated: Use path::extension() instead [-Wdeprecated-declarations] 150 | string locationExtension = bal::to_lower_copy(bfs::extension(sf.location)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /usr/include/boost/filesystem/convenience.hpp:29:20: note: declared here 29 | inline std::string extension(const path& p) | ^~~~~~~~~ /<>/src/pwiz/data/msdata/Serializer_mzXML.cpp:157:37: warning: ‘std::string boost::filesystem::basename(const path&)’ is deprecated: Use path::stem() instead [-Wdeprecated-declarations] 157 | return bfs::basename(sf.name); | ~~~~~~~~~~~~~^~~~~~~~~ /usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here 35 | inline std::string basename(const path& p) | ^~~~~~~~ /<>/src/pwiz/data/msdata/Serializer_mzXML.cpp:164:65: warning: ‘boost::filesystem::path boost::filesystem::path::leaf() const’ is deprecated: Use path::filename() instead [-Wdeprecated-declarations] 164 | return bfs::basename(bfs::path(sf.location).leaf()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/boost/filesystem/operations.hpp:20, from /<>/src/pwiz/utility/misc/Filesystem.hpp:36: /usr/include/boost/filesystem/path.hpp:1127:10: note: declared here 1127 | path leaf() const { return filename(); } | ^~~~ /<>/src/pwiz/data/msdata/Serializer_mzXML.cpp:164:37: warning: ‘std::string boost::filesystem::basename(const path&)’ is deprecated: Use path::stem() instead [-Wdeprecated-declarations] 164 | return bfs::basename(bfs::path(sf.location).leaf()); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here 35 | inline std::string basename(const path& p) | ^~~~~~~~ /<>/src/pwiz/data/msdata/Serializer_mzXML.cpp:166:37: warning: ‘std::string boost::filesystem::basename(const path&)’ is deprecated: Use path::stem() instead [-Wdeprecated-declarations] 166 | return bfs::basename(sf.name); | ~~~~~~~~~~~~~^~~~~~~~~ /usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here 35 | inline std::string basename(const path& p) | ^~~~~~~~ /<>/src/pwiz/data/msdata/Serializer_mzXML.cpp:172:65: warning: ‘boost::filesystem::path boost::filesystem::path::leaf() const’ is deprecated: Use path::filename() instead [-Wdeprecated-declarations] 172 | return bfs::basename(bfs::path(sf.location).leaf()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /usr/include/boost/filesystem/path.hpp:1127:10: note: declared here 1127 | path leaf() const { return filename(); } | ^~~~ /<>/src/pwiz/data/msdata/Serializer_mzXML.cpp:172:37: warning: ‘std::string boost::filesystem::basename(const path&)’ is deprecated: Use path::stem() instead [-Wdeprecated-declarations] 172 | return bfs::basename(bfs::path(sf.location).leaf()); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here 35 | inline std::string basename(const path& p) | ^~~~~~~~ /<>/src/pwiz/data/msdata/Serializer_mzXML.cpp:178:65: warning: ‘boost::filesystem::path boost::filesystem::path::leaf() const’ is deprecated: Use path::filename() instead [-Wdeprecated-declarations] 178 | return bfs::basename(bfs::path(sf.location).leaf()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /usr/include/boost/filesystem/path.hpp:1127:10: note: declared here 1127 | path leaf() const { return filename(); } | ^~~~ /<>/src/pwiz/data/msdata/Serializer_mzXML.cpp:178:37: warning: ‘std::string boost::filesystem::basename(const path&)’ is deprecated: Use path::stem() instead [-Wdeprecated-declarations] 178 | return bfs::basename(bfs::path(sf.location).leaf()); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here 35 | inline std::string basename(const path& p) | ^~~~~~~~ /<>/src/pwiz/data/msdata/Serializer_mzXML.cpp:184:65: warning: ‘boost::filesystem::path boost::filesystem::path::leaf() const’ is deprecated: Use path::filename() instead [-Wdeprecated-declarations] 184 | return bfs::basename(bfs::path(sf.location).leaf()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /usr/include/boost/filesystem/path.hpp:1127:10: note: declared here 1127 | path leaf() const { return filename(); } | ^~~~ /<>/src/pwiz/data/msdata/Serializer_mzXML.cpp:184:37: warning: ‘std::string boost::filesystem::basename(const path&)’ is deprecated: Use path::stem() instead [-Wdeprecated-declarations] 184 | return bfs::basename(bfs::path(sf.location).leaf()); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here 35 | inline std::string basename(const path& p) | ^~~~~~~~ /<>/src/pwiz/data/msdata/Serializer_mzXML.cpp:190:65: warning: ‘boost::filesystem::path boost::filesystem::path::leaf() const’ is deprecated: Use path::filename() instead [-Wdeprecated-declarations] 190 | return bfs::basename(bfs::path(sf.location).leaf()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /usr/include/boost/filesystem/path.hpp:1127:10: note: declared here 1127 | path leaf() const { return filename(); } | ^~~~ /<>/src/pwiz/data/msdata/Serializer_mzXML.cpp:190:37: warning: ‘std::string boost::filesystem::basename(const path&)’ is deprecated: Use path::stem() instead [-Wdeprecated-declarations] 190 | return bfs::basename(bfs::path(sf.location).leaf()); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here 35 | inline std::string basename(const path& p) | ^~~~~~~~ /<>/src/pwiz/data/msdata/Serializer_mzXML.cpp:195:44: warning: ‘boost::filesystem::path boost::filesystem::path::leaf() const’ is deprecated: Use path::filename() instead [-Wdeprecated-declarations] 195 | if (bfs::path(sf.location).leaf() == "AcqData" && | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /usr/include/boost/filesystem/path.hpp:1127:10: note: declared here 1127 | path leaf() const { return filename(); } | ^~~~ /<>/src/pwiz/data/msdata/Serializer_mzXML.cpp:199:79: warning: ‘boost::filesystem::path boost::filesystem::path::leaf() const’ is deprecated: Use path::filename() instead [-Wdeprecated-declarations] 199 | return bfs::basename(bfs::path(sf.location).parent_path().leaf()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /usr/include/boost/filesystem/path.hpp:1127:10: note: declared here 1127 | path leaf() const { return filename(); } | ^~~~ /<>/src/pwiz/data/msdata/Serializer_mzXML.cpp:199:37: warning: ‘std::string boost::filesystem::basename(const path&)’ is deprecated: Use path::stem() instead [-Wdeprecated-declarations] 199 | return bfs::basename(bfs::path(sf.location).parent_path().leaf()); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here 35 | inline std::string basename(const path& p) | ^~~~~~~~ /<>/src/pwiz/data/msdata/Serializer_mzXML.cpp:207:37: warning: ‘std::string boost::filesystem::basename(const path&)’ is deprecated: Use path::stem() instead [-Wdeprecated-declarations] 207 | return bfs::basename(sf.name); | ~~~~~~~~~~~~~^~~~~~~~~ /usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here 35 | inline std::string basename(const path& p) | ^~~~~~~~ /<>/src/pwiz/data/msdata/Serializer_mzXML.cpp:216:37: warning: ‘std::string boost::filesystem::basename(const path&)’ is deprecated: Use path::stem() instead [-Wdeprecated-declarations] 216 | return bfs::basename(sf.name); | ~~~~~~~~~~~~~^~~~~~~~~ /usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here 35 | inline std::string basename(const path& p) | ^~~~~~~~ /<>/src/pwiz/data/msdata/Serializer_mzXML.cpp:222:37: warning: ‘std::string boost::filesystem::basename(const path&)’ is deprecated: Use path::stem() instead [-Wdeprecated-declarations] 222 | return bfs::basename(sf.name); | ~~~~~~~~~~~~~^~~~~~~~~ /usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here 35 | inline std::string basename(const path& p) | ^~~~~~~~ /<>/src/pwiz/data/msdata/Serializer_mzXML.cpp:228:37: warning: ‘std::string boost::filesystem::basename(const path&)’ is deprecated: Use path::stem() instead [-Wdeprecated-declarations] 228 | return bfs::basename(sf.name); | ~~~~~~~~~~~~~^~~~~~~~~ /usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here 35 | inline std::string basename(const path& p) | ^~~~~~~~ /<>/src/pwiz/data/msdata/Serializer_mzXML.cpp: In function ‘std::vector pwiz::msdata::{anonymous}::getPrecursorInfo(const pwiz::msdata::Spectrum&, pwiz::msdata::SpectrumListPtr, pwiz::cv::CVID)’: /<>/src/pwiz/data/msdata/Serializer_mzXML.cpp:454:62: warning: unused parameter ‘spectrumListPtr’ [-Wunused-parameter] 454 | const SpectrumListPtr spectrumListPtr, | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/src/pwiz/data/msdata/Serializer_mzXML.cpp: In function ‘pwiz::cv::CVID pwiz::msdata::{anonymous}::translate_parentFilenameToSourceFileType(const std::string&)’: /<>/src/pwiz/data/msdata/Serializer_mzXML.cpp:878:61: warning: ‘std::string boost::filesystem::extension(const path&)’ is deprecated: Use path::extension() instead [-Wdeprecated-declarations] 878 | string fileExtension = bal::to_lower_copy(bfs::extension(name)); | ~~~~~~~~~~~~~~^~~~~~ /usr/include/boost/filesystem/convenience.hpp:29:20: note: declared here 29 | inline std::string extension(const path& p) | ^~~~~~~~~ /<>/src/pwiz/data/msdata/Serializer_mzXML.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerScanFileContent::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)’: /<>/src/pwiz/data/msdata/Serializer_mzXML.cpp:1027:47: warning: unused parameter ‘position’ [-Wunused-parameter] 1027 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/data/msdata/Serializer_mzXML.cpp: In function ‘void pwiz::msdata::{anonymous}::fillInMetadata(pwiz::msdata::MSData&)’: /<>/src/pwiz/data/msdata/Serializer_mzXML.cpp:1139:65: warning: ‘boost::filesystem::path boost::filesystem::path::leaf() const’ is deprecated: Use path::filename() instead [-Wdeprecated-declarations] 1139 | msd.id = msd.run.id = BFS_STRING(bfs::path(lcp).leaf()); | ~~~~~~~~~~~~~~~~~~~^~ /<>/src/pwiz/utility/misc/Filesystem.hpp:64:24: note: in definition of macro ‘BFS_STRING’ 64 | #define BFS_STRING(p) (p).string() | ^ /usr/include/boost/filesystem/path.hpp:1127:10: note: declared here 1127 | path leaf() const { return filename(); } | ^~~~ /<>/src/pwiz/data/msdata/Serializer_mzXML.cpp:1141:79: warning: ‘boost::filesystem::path boost::filesystem::path::leaf() const’ is deprecated: Use path::filename() instead [-Wdeprecated-declarations] 1141 | msd.id = msd.run.id = BFS_STRING(bfs::path(lcp).parent_path().leaf()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /<>/src/pwiz/utility/misc/Filesystem.hpp:64:24: note: in definition of macro ‘BFS_STRING’ 64 | #define BFS_STRING(p) (p).string() | ^ /usr/include/boost/filesystem/path.hpp:1127:10: note: declared here 1127 | path leaf() const { return filename(); } | ^~~~ /<>/src/pwiz/data/msdata/Serializer_mzXML.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::Handler_msInstrument::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)’: /<>/src/pwiz/data/msdata/Serializer_mzXML.cpp:1156:47: warning: unused parameter ‘position’ [-Wunused-parameter] 1156 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/data/msdata/Serializer_mzXML.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::Handler_msInstrument::endElement(const std::string&, pwiz::minimxml::SAXParser::Handler::stream_offset)’: /<>/src/pwiz/data/msdata/Serializer_mzXML.cpp:1237:45: warning: unused parameter ‘position’ [-Wunused-parameter] 1237 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/data/msdata/Serializer_mzXML.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::Handler_dataProcessing::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)’: /<>/src/pwiz/data/msdata/Serializer_mzXML.cpp:1285:47: warning: unused parameter ‘position’ [-Wunused-parameter] 1285 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/data/msdata/Serializer_mzXML.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::Handler_mzXML::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)’: /<>/src/pwiz/data/msdata/Serializer_mzXML.cpp:1353:47: warning: unused parameter ‘position’ [-Wunused-parameter] 1353 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ [ 80%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumListBase.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/<>/obj-aarch64-linux-gnu/src -I/<>/src -I/<>/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumListBase.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumListBase.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumListBase.cpp.o -c /<>/src/pwiz/data/msdata/SpectrumListBase.cpp In file included from /<>/src/pwiz/data/msdata/MSData.hpp:29, from /<>/src/pwiz/data/msdata/SpectrumListBase.hpp:28, from /<>/src/pwiz/data/msdata/SpectrumListBase.cpp:25: /<>/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/13/bits/stl_algobase.h:65, from /usr/aarch64-linux-gnu/include/c++/13/algorithm:60, from /<>/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/aarch64-linux-gnu/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/aarch64-linux-gnu/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /<>/src/pwiz/data/msdata/MSData.hpp: In member function ‘virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const’: /<>/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter ‘msg’ [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /<>/src/pwiz/data/msdata/MSData.hpp: In member function ‘virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const’: /<>/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter ‘msg’ [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ In file included from /<>/src/pwiz/data/msdata/SpectrumListBase.cpp:26: /<>/src/pwiz/utility/misc/String.hpp: In lambda function: /<>/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] 87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); | ~~~~~~~~~~~~~~~~~~~~~^~~ [ 81%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_MGF.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/<>/obj-aarch64-linux-gnu/src -I/<>/src -I/<>/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_MGF.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_MGF.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_MGF.cpp.o -c /<>/src/pwiz/data/msdata/SpectrumList_MGF.cpp In file included from /<>/src/pwiz/data/msdata/MSData.hpp:29, from /<>/src/pwiz/data/msdata/SpectrumListBase.hpp:28, from /<>/src/pwiz/data/msdata/SpectrumList_MGF.hpp:30, from /<>/src/pwiz/data/msdata/SpectrumList_MGF.cpp:26: /<>/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/13/bits/stl_algobase.h:65, from /usr/aarch64-linux-gnu/include/c++/13/algorithm:60, from /<>/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/aarch64-linux-gnu/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/aarch64-linux-gnu/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /<>/src/pwiz/data/msdata/MSData.hpp: In member function ‘virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const’: /<>/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter ‘msg’ [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /<>/src/pwiz/data/msdata/MSData.hpp: In member function ‘virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const’: /<>/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter ‘msg’ [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /<>/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /<>/src/pwiz/data/common/ParamTypes.hpp:29, from /<>/src/pwiz/data/msdata/MSData.hpp:30: /usr/include/boost/iterator.hpp: At global scope: /usr/include/boost/iterator.hpp:10:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/src/pwiz/utility/misc/Std.hpp:31, from /<>/src/pwiz/data/msdata/SpectrumList_MGF.cpp:28: /<>/src/pwiz/utility/misc/String.hpp: In lambda function: /<>/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] 87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); | ~~~~~~~~~~~~~~~~~~~~~^~~ [ 82%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_MSn.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/<>/obj-aarch64-linux-gnu/src -I/<>/src -I/<>/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_MSn.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_MSn.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_MSn.cpp.o -c /<>/src/pwiz/data/msdata/SpectrumList_MSn.cpp In file included from /<>/src/pwiz/data/msdata/MSData.hpp:29, from /<>/src/pwiz/data/msdata/SpectrumListBase.hpp:28, from /<>/src/pwiz/data/msdata/SpectrumList_MSn.hpp:29, from /<>/src/pwiz/data/msdata/SpectrumList_MSn.cpp:26: /<>/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/13/bits/stl_algobase.h:65, from /usr/aarch64-linux-gnu/include/c++/13/algorithm:60, from /<>/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/aarch64-linux-gnu/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/aarch64-linux-gnu/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /<>/src/pwiz/data/msdata/MSData.hpp: In member function ‘virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const’: /<>/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter ‘msg’ [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /<>/src/pwiz/data/msdata/MSData.hpp: In member function ‘virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const’: /<>/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter ‘msg’ [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /<>/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /<>/src/pwiz/data/common/ParamTypes.hpp:29, from /<>/src/pwiz/data/msdata/MSData.hpp:30: /usr/include/boost/iterator.hpp: At global scope: /usr/include/boost/iterator.hpp:10:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/src/pwiz/utility/misc/Std.hpp:31, from /<>/src/pwiz/data/msdata/SpectrumList_MSn.cpp:28: /<>/src/pwiz/utility/misc/String.hpp: In lambda function: /<>/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] 87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); | ~~~~~~~~~~~~~~~~~~~~~^~~ [ 84%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumWorkerThreads.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/<>/obj-aarch64-linux-gnu/src -I/<>/src -I/<>/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumWorkerThreads.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumWorkerThreads.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumWorkerThreads.cpp.o -c /<>/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp In file included from /usr/include/boost/lexical_cast.hpp:26, from /<>/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /<>/src/pwiz/utility/misc/Environment.hpp:24, from /<>/src/pwiz/utility/misc/Std.hpp:29, from /<>/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp:24: /usr/include/boost/iterator.hpp:10:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/src/pwiz/utility/misc/Std.hpp:31: /<>/src/pwiz/utility/misc/String.hpp: In lambda function: /<>/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] 87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); | ~~~~~~~~~~~~~~~~~~~~~^~~ In file included from /<>/src/pwiz/data/msdata/MSData.hpp:29, from /<>/src/pwiz/data/msdata/SpectrumWorkerThreads.hpp:26, from /<>/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp:26: /<>/src/pwiz/utility/misc/BinaryData.hpp: At global scope: /<>/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/13/bits/stl_iterator_base_funcs.h:66, from /usr/aarch64-linux-gnu/include/c++/13/string:47, from /usr/aarch64-linux-gnu/include/c++/13/stdexcept:39, from /<>/src/pwiz/utility/misc/Exception.hpp:28, from /<>/src/pwiz/utility/misc/Std.hpp:28: /usr/aarch64-linux-gnu/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/aarch64-linux-gnu/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /<>/src/pwiz/data/msdata/MSData.hpp: In member function ‘virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const’: /<>/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter ‘msg’ [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /<>/src/pwiz/data/msdata/MSData.hpp: In member function ‘virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const’: /<>/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter ‘msg’ [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /<>/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp: In constructor ‘pwiz::msdata::SpectrumWorkerThreads::Impl::Impl(const pwiz::msdata::SpectrumList&, bool, bool)’: /<>/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp:337:22: warning: ‘pwiz::msdata::SpectrumWorkerThreads::Impl::taskMRU_’ will be initialized after [-Wreorder] 337 | mru_list taskMRU_; | ^~~~~~~~ /<>/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp:334:10: warning: ‘bool pwiz::msdata::SpectrumWorkerThreads::Impl::continueOnError_’ [-Wreorder] 334 | bool continueOnError_; | ^~~~~~~~~~~~~~~~ /<>/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp:60:5: warning: when initialized here [-Wreorder] 60 | Impl(const SpectrumList& sl, bool useWorkerThreads, bool continueOnError) | ^~~~ [ 85%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/mzmlb/Connection_mzMLb.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/<>/obj-aarch64-linux-gnu/src -I/<>/src -I/<>/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/mzmlb/Connection_mzMLb.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/mzmlb/Connection_mzMLb.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/mzmlb/Connection_mzMLb.cpp.o -c /<>/src/pwiz/data/msdata/mzmlb/Connection_mzMLb.cpp /<>/src/pwiz/data/msdata/mzmlb/Connection_mzMLb.cpp: In constructor ‘pwiz::msdata::mzmlb::Connection_mzMLb::Connection_mzMLb(const std::string&, int, int)’: /<>/src/pwiz/data/msdata/mzmlb/Connection_mzMLb.cpp:142:26: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 142 | nbytes = (nbytes > chunk_size) ? nbytes : chunk_size; // Set per dataset cache to twice the chunk size please | ~~~~~~~^~~~~~~~~~~~ [ 86%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/minimxml/SAXParser.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/<>/obj-aarch64-linux-gnu/src -I/<>/src -I/<>/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/minimxml/SAXParser.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/utility/minimxml/SAXParser.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/utility/minimxml/SAXParser.cpp.o -c /<>/src/pwiz/utility/minimxml/SAXParser.cpp In file included from /<>/src/pwiz/utility/minimxml/SAXParser.cpp:28: /<>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)’: /<>/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter ‘name’ [-Wunused-parameter] 585 | virtual Status processingInstruction(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter ‘data’ [-Wunused-parameter] 586 | const std::string& data, | ~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter ‘position’ [-Wunused-parameter] 587 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)’: /<>/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter ‘name’ [-Wunused-parameter] 589 | virtual Status startElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter ‘attributes’ [-Wunused-parameter] 590 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter ‘position’ [-Wunused-parameter] 591 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)’: /<>/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter ‘name’ [-Wunused-parameter] 593 | virtual Status endElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter ‘position’ [-Wunused-parameter] 594 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)’: /<>/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter ‘text’ [-Wunused-parameter] 596 | virtual Status characters(const SAXParser::saxstring& text, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter ‘position’ [-Wunused-parameter] 597 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /<>/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /<>/src/pwiz/utility/minimxml/SAXParser.hpp:31: /usr/include/boost/iterator.hpp: At global scope: /usr/include/boost/iterator.hpp:10:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/src/pwiz/utility/misc/Std.hpp:31, from /<>/src/pwiz/utility/minimxml/SAXParser.cpp:29: /<>/src/pwiz/utility/misc/String.hpp: In lambda function: /<>/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] 87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); | ~~~~~~~~~~~~~~~~~~~~~^~~ /<>/src/pwiz/utility/minimxml/SAXParser.cpp: In function ‘void pwiz::minimxml::SAXParser::parse(std::istream&, Handler&)’: /<>/src/pwiz/utility/minimxml/SAXParser.cpp:543:61: warning: offset ‘1’ outside bounds of constant string [-Warray-bounds=] 543 | Handler::Status status = wrangler.endElement(buffer.c_str()+1, position); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/pwiz/utility/minimxml/SAXParser.cpp:549:17: warning: ‘inCDATA’ may be used uninitialized [-Wmaybe-uninitialized] 549 | if (inCDATA) | ^~ /<>/src/pwiz/utility/minimxml/SAXParser.cpp:501:14: note: ‘inCDATA’ was declared here 501 | bool inCDATA; | ^~~~~~~ [ 87%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/minimxml/XMLWriter.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/<>/obj-aarch64-linux-gnu/src -I/<>/src -I/<>/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/minimxml/XMLWriter.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/utility/minimxml/XMLWriter.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/utility/minimxml/XMLWriter.cpp.o -c /<>/src/pwiz/utility/minimxml/XMLWriter.cpp In file included from /usr/include/boost/lexical_cast.hpp:26, from /<>/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /<>/src/pwiz/utility/minimxml/XMLWriter.hpp:29, from /<>/src/pwiz/utility/minimxml/XMLWriter.cpp:25: /usr/include/boost/iterator.hpp:10:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/src/pwiz/utility/misc/Std.hpp:31, from /<>/src/pwiz/utility/minimxml/XMLWriter.cpp:26: /<>/src/pwiz/utility/misc/String.hpp: In lambda function: /<>/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] 87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); | ~~~~~~~~~~~~~~~~~~~~~^~~ [ 89%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/Base64.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/<>/obj-aarch64-linux-gnu/src -I/<>/src -I/<>/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/Base64.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/Base64.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/Base64.cpp.o -c /<>/src/pwiz/utility/misc/Base64.cpp In file included from /usr/include/boost/lexical_cast.hpp:26, from /<>/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /<>/src/pwiz/utility/misc/Environment.hpp:24, from /<>/src/pwiz/utility/misc/Std.hpp:29, from /<>/src/pwiz/utility/misc/Base64.cpp:26: /usr/include/boost/iterator.hpp:10:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/src/pwiz/utility/misc/Std.hpp:31: /<>/src/pwiz/utility/misc/String.hpp: In lambda function: /<>/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] 87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); | ~~~~~~~~~~~~~~~~~~~~~^~~ [ 90%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/IterationListener.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/<>/obj-aarch64-linux-gnu/src -I/<>/src -I/<>/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/IterationListener.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/IterationListener.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/IterationListener.cpp.o -c /<>/src/pwiz/utility/misc/IterationListener.cpp In file included from /usr/include/boost/lexical_cast.hpp:26, from /<>/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /<>/src/pwiz/utility/misc/Environment.hpp:24, from /<>/src/pwiz/utility/misc/Std.hpp:29, from /<>/src/pwiz/utility/misc/IterationListener.cpp:26: /usr/include/boost/iterator.hpp:10:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/src/pwiz/utility/misc/Std.hpp:31: /<>/src/pwiz/utility/misc/String.hpp: In lambda function: /<>/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] 87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); | ~~~~~~~~~~~~~~~~~~~~~^~~ In file included from /<>/src/pwiz/utility/misc/IterationListener.cpp:27: /<>/src/pwiz/utility/misc/IterationListener.hpp: In member function ‘virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)’: /<>/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter ‘updateMessage’ [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ [ 91%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/SHA1.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/<>/obj-aarch64-linux-gnu/src -I/<>/src -I/<>/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/SHA1.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/SHA1.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/SHA1.cpp.o -c /<>/src/pwiz/utility/misc/SHA1.cpp [ 92%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/SHA1Calculator.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/<>/obj-aarch64-linux-gnu/src -I/<>/src -I/<>/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/SHA1Calculator.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/SHA1Calculator.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/SHA1Calculator.cpp.o -c /<>/src/pwiz/utility/misc/SHA1Calculator.cpp In file included from /usr/include/boost/smart_ptr/detail/requires_cxx11.hpp:9, from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, from /usr/include/boost/shared_ptr.hpp:17, from /<>/src/pwiz/utility/misc/SHA1Calculator.hpp:28, from /<>/src/pwiz/utility/misc/SHA1Calculator.cpp:32: /usr/include/boost/iterator.hpp:10:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/src/pwiz/utility/misc/Std.hpp:31, from /<>/src/pwiz/utility/misc/SHA1Calculator.cpp:33: /<>/src/pwiz/utility/misc/String.hpp: In lambda function: /<>/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] 87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); | ~~~~~~~~~~~~~~~~~~~~~^~~ [ 93%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/random_access_compressed_ifstream.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/<>/obj-aarch64-linux-gnu/src -I/<>/src -I/<>/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/random_access_compressed_ifstream.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/random_access_compressed_ifstream.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/random_access_compressed_ifstream.cpp.o -c /<>/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp In file included from /usr/include/boost/smart_ptr/detail/requires_cxx11.hpp:9, from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/iostreams/device/file_descriptor.hpp:28, from /<>/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp:69: /usr/include/boost/iterator.hpp:10:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/src/pwiz/utility/misc/Std.hpp:31, from /<>/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp:76: /<>/src/pwiz/utility/misc/String.hpp: In lambda function: /<>/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] 87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); | ~~~~~~~~~~~~~~~~~~~~~^~~ /<>/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp: In member function ‘std::streampos pwiz::util::random_access_compressed_streambuf::my_seekg(std::streampos, std::ios_base::seekdir, std::ios_base::openmode)’: /<>/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp:824:138: warning: unused parameter ‘Mode’ [-Wunused-parameter] 824 | std::streampos random_access_compressed_streambuf::my_seekg(std::streampos offset, std::ios_base::seekdir whence,std::ios_base::openmode Mode) { | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /<>/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp: In member function ‘std::streampos pwiz::util::chunky_streambuf::my_seekg(boost::iostreams::stream_offset, std::ios_base::seekdir, std::ios_base::openmode)’: /<>/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp:1199:137: warning: unused parameter ‘Mode’ [-Wunused-parameter] 1199 | std::streampos chunky_streambuf::my_seekg(boost::iostreams::stream_offset offset, std::ios_base::seekdir whence,std::ios_base::openmode Mode) { | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~ [ 95%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/BinaryData.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/<>/obj-aarch64-linux-gnu/src -I/<>/src -I/<>/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/BinaryData.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/BinaryData.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/BinaryData.cpp.o -c /<>/src/pwiz/utility/misc/BinaryData.cpp In file included from /<>/src/pwiz/utility/misc/BinaryData.cpp:24: /<>/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/13/bits/stl_algobase.h:65, from /usr/aarch64-linux-gnu/include/c++/13/algorithm:60, from /<>/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/aarch64-linux-gnu/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/aarch64-linux-gnu/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.hpp: In instantiation of ‘const T& pwiz::util::BinaryData::at(size_type) const [with T = double; const_reference = const double&; size_type = long unsigned int]’: /<>/src/pwiz/utility/misc/BinaryData.cpp:498:30: required from here /<>/src/pwiz/utility/misc/BinaryData.hpp:256:19: warning: comparison of unsigned expression in ‘< 0’ is always false [-Wtype-limits] 256 | if (index < 0 || index >= size()) | ~~~~~~^~~ /<>/src/pwiz/utility/misc/BinaryData.hpp: In instantiation of ‘T& pwiz::util::BinaryData::at(size_type) [with T = double; reference = double&; size_type = long unsigned int]’: /<>/src/pwiz/utility/misc/BinaryData.cpp:498:30: required from here /<>/src/pwiz/utility/misc/BinaryData.hpp:263:19: warning: comparison of unsigned expression in ‘< 0’ is always false [-Wtype-limits] 263 | if (index < 0 || index >= size()) | ~~~~~~^~~ /<>/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of ‘pwiz::util::BinaryData::Impl::Impl(void*) [with T = double]’: /<>/src/pwiz/utility/misc/BinaryData.cpp:498:30: required from here /<>/src/pwiz/utility/misc/BinaryData.cpp:58:16: warning: unused parameter ‘cliNumericArray’ [-Wunused-parameter] 58 | Impl(void* cliNumericArray) | ~~~~~~^~~~~~~~~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of ‘pwiz::util::BinaryData::Impl& pwiz::util::BinaryData::Impl::operator=(void*) [with T = double]’: /<>/src/pwiz/utility/misc/BinaryData.cpp:498:30: required from here /<>/src/pwiz/utility/misc/BinaryData.cpp:72:27: warning: unused parameter ‘cliNumericArray’ [-Wunused-parameter] 72 | Impl& operator=(void* cliNumericArray) | ~~~~~~^~~~~~~~~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of ‘void pwiz::util::BinaryData::Impl::cacheIterators(pwiz::util::BinaryData&) [with T = double]’: /<>/src/pwiz/utility/misc/BinaryData.cpp:498:30: required from here /<>/src/pwiz/utility/misc/BinaryData.cpp:313:16: warning: implicitly-declared ‘constexpr pwiz::util::BinaryData::iterator& pwiz::util::BinaryData::iterator::operator=(const pwiz::util::BinaryData::iterator&)’ is deprecated [-Wdeprecated-copy] 313 | begin_ = iterator(binaryData, true); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.hpp:113:9: note: because ‘pwiz::util::BinaryData::iterator’ has user-provided ‘pwiz::util::BinaryData::iterator::iterator(const pwiz::util::BinaryData::iterator&) [with T = double]’ 113 | iterator(const iterator& rhs) : current_(rhs.current_) {} | ^~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.cpp:314:14: warning: implicitly-declared ‘constexpr pwiz::util::BinaryData::iterator& pwiz::util::BinaryData::iterator::operator=(const pwiz::util::BinaryData::iterator&)’ is deprecated [-Wdeprecated-copy] 314 | end_ = iterator(binaryData, false); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.hpp:113:9: note: because ‘pwiz::util::BinaryData::iterator’ has user-provided ‘pwiz::util::BinaryData::iterator::iterator(const pwiz::util::BinaryData::iterator&) [with T = double]’ 113 | iterator(const iterator& rhs) : current_(rhs.current_) {} | ^~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.cpp:315:17: warning: implicitly-declared ‘constexpr pwiz::util::BinaryData::const_iterator& pwiz::util::BinaryData::const_iterator::operator=(const pwiz::util::BinaryData::const_iterator&)’ is deprecated [-Wdeprecated-copy] 315 | cbegin_ = const_iterator(binaryData, true); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.hpp:79:9: note: because ‘pwiz::util::BinaryData::const_iterator’ has user-provided ‘pwiz::util::BinaryData::const_iterator::const_iterator(const pwiz::util::BinaryData::const_iterator&) [with T = double]’ 79 | const_iterator(const const_iterator& rhs) : current_(rhs.current_) {} | ^~~~~~~~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.cpp:316:15: warning: implicitly-declared ‘constexpr pwiz::util::BinaryData::const_iterator& pwiz::util::BinaryData::const_iterator::operator=(const pwiz::util::BinaryData::const_iterator&)’ is deprecated [-Wdeprecated-copy] 316 | cend_ = const_iterator(binaryData, false); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.hpp:79:9: note: because ‘pwiz::util::BinaryData::const_iterator’ has user-provided ‘pwiz::util::BinaryData::const_iterator::const_iterator(const pwiz::util::BinaryData::const_iterator&) [with T = double]’ 79 | const_iterator(const const_iterator& rhs) : current_(rhs.current_) {} | ^~~~~~~~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.hpp: In instantiation of ‘const T& pwiz::util::BinaryData::at(size_type) const [with T = float; const_reference = const float&; size_type = long unsigned int]’: /<>/src/pwiz/utility/misc/BinaryData.cpp:499:30: required from here /<>/src/pwiz/utility/misc/BinaryData.hpp:256:19: warning: comparison of unsigned expression in ‘< 0’ is always false [-Wtype-limits] 256 | if (index < 0 || index >= size()) | ~~~~~~^~~ /<>/src/pwiz/utility/misc/BinaryData.hpp: In instantiation of ‘T& pwiz::util::BinaryData::at(size_type) [with T = float; reference = float&; size_type = long unsigned int]’: /<>/src/pwiz/utility/misc/BinaryData.cpp:499:30: required from here /<>/src/pwiz/utility/misc/BinaryData.hpp:263:19: warning: comparison of unsigned expression in ‘< 0’ is always false [-Wtype-limits] 263 | if (index < 0 || index >= size()) | ~~~~~~^~~ /<>/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of ‘pwiz::util::BinaryData::Impl::Impl(void*) [with T = float]’: /<>/src/pwiz/utility/misc/BinaryData.cpp:499:30: required from here /<>/src/pwiz/utility/misc/BinaryData.cpp:58:16: warning: unused parameter ‘cliNumericArray’ [-Wunused-parameter] 58 | Impl(void* cliNumericArray) | ~~~~~~^~~~~~~~~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of ‘pwiz::util::BinaryData::Impl& pwiz::util::BinaryData::Impl::operator=(void*) [with T = float]’: /<>/src/pwiz/utility/misc/BinaryData.cpp:499:30: required from here /<>/src/pwiz/utility/misc/BinaryData.cpp:72:27: warning: unused parameter ‘cliNumericArray’ [-Wunused-parameter] 72 | Impl& operator=(void* cliNumericArray) | ~~~~~~^~~~~~~~~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of ‘void pwiz::util::BinaryData::Impl::cacheIterators(pwiz::util::BinaryData&) [with T = float]’: /<>/src/pwiz/utility/misc/BinaryData.cpp:499:30: required from here /<>/src/pwiz/utility/misc/BinaryData.cpp:313:16: warning: implicitly-declared ‘constexpr pwiz::util::BinaryData::iterator& pwiz::util::BinaryData::iterator::operator=(const pwiz::util::BinaryData::iterator&)’ is deprecated [-Wdeprecated-copy] 313 | begin_ = iterator(binaryData, true); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.hpp:113:9: note: because ‘pwiz::util::BinaryData::iterator’ has user-provided ‘pwiz::util::BinaryData::iterator::iterator(const pwiz::util::BinaryData::iterator&) [with T = float]’ 113 | iterator(const iterator& rhs) : current_(rhs.current_) {} | ^~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.cpp:314:14: warning: implicitly-declared ‘constexpr pwiz::util::BinaryData::iterator& pwiz::util::BinaryData::iterator::operator=(const pwiz::util::BinaryData::iterator&)’ is deprecated [-Wdeprecated-copy] 314 | end_ = iterator(binaryData, false); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.hpp:113:9: note: because ‘pwiz::util::BinaryData::iterator’ has user-provided ‘pwiz::util::BinaryData::iterator::iterator(const pwiz::util::BinaryData::iterator&) [with T = float]’ 113 | iterator(const iterator& rhs) : current_(rhs.current_) {} | ^~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.cpp:315:17: warning: implicitly-declared ‘constexpr pwiz::util::BinaryData::const_iterator& pwiz::util::BinaryData::const_iterator::operator=(const pwiz::util::BinaryData::const_iterator&)’ is deprecated [-Wdeprecated-copy] 315 | cbegin_ = const_iterator(binaryData, true); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.hpp:79:9: note: because ‘pwiz::util::BinaryData::const_iterator’ has user-provided ‘pwiz::util::BinaryData::const_iterator::const_iterator(const pwiz::util::BinaryData::const_iterator&) [with T = float]’ 79 | const_iterator(const const_iterator& rhs) : current_(rhs.current_) {} | ^~~~~~~~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.cpp:316:15: warning: implicitly-declared ‘constexpr pwiz::util::BinaryData::const_iterator& pwiz::util::BinaryData::const_iterator::operator=(const pwiz::util::BinaryData::const_iterator&)’ is deprecated [-Wdeprecated-copy] 316 | cend_ = const_iterator(binaryData, false); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.hpp:79:9: note: because ‘pwiz::util::BinaryData::const_iterator’ has user-provided ‘pwiz::util::BinaryData::const_iterator::const_iterator(const pwiz::util::BinaryData::const_iterator&) [with T = float]’ 79 | const_iterator(const const_iterator& rhs) : current_(rhs.current_) {} | ^~~~~~~~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.hpp: In instantiation of ‘const T& pwiz::util::BinaryData::at(size_type) const [with T = long int; const_reference = const long int&; size_type = long unsigned int]’: /<>/src/pwiz/utility/misc/BinaryData.cpp:500:30: required from here /<>/src/pwiz/utility/misc/BinaryData.hpp:256:19: warning: comparison of unsigned expression in ‘< 0’ is always false [-Wtype-limits] 256 | if (index < 0 || index >= size()) | ~~~~~~^~~ /<>/src/pwiz/utility/misc/BinaryData.hpp: In instantiation of ‘T& pwiz::util::BinaryData::at(size_type) [with T = long int; reference = long int&; size_type = long unsigned int]’: /<>/src/pwiz/utility/misc/BinaryData.cpp:500:30: required from here /<>/src/pwiz/utility/misc/BinaryData.hpp:263:19: warning: comparison of unsigned expression in ‘< 0’ is always false [-Wtype-limits] 263 | if (index < 0 || index >= size()) | ~~~~~~^~~ /<>/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of ‘pwiz::util::BinaryData::Impl::Impl(void*) [with T = long int]’: /<>/src/pwiz/utility/misc/BinaryData.cpp:500:30: required from here /<>/src/pwiz/utility/misc/BinaryData.cpp:58:16: warning: unused parameter ‘cliNumericArray’ [-Wunused-parameter] 58 | Impl(void* cliNumericArray) | ~~~~~~^~~~~~~~~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of ‘pwiz::util::BinaryData::Impl& pwiz::util::BinaryData::Impl::operator=(void*) [with T = long int]’: /<>/src/pwiz/utility/misc/BinaryData.cpp:500:30: required from here /<>/src/pwiz/utility/misc/BinaryData.cpp:72:27: warning: unused parameter ‘cliNumericArray’ [-Wunused-parameter] 72 | Impl& operator=(void* cliNumericArray) | ~~~~~~^~~~~~~~~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of ‘void pwiz::util::BinaryData::Impl::cacheIterators(pwiz::util::BinaryData&) [with T = long int]’: /<>/src/pwiz/utility/misc/BinaryData.cpp:500:30: required from here /<>/src/pwiz/utility/misc/BinaryData.cpp:313:16: warning: implicitly-declared ‘constexpr pwiz::util::BinaryData::iterator& pwiz::util::BinaryData::iterator::operator=(const pwiz::util::BinaryData::iterator&)’ is deprecated [-Wdeprecated-copy] 313 | begin_ = iterator(binaryData, true); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.hpp:113:9: note: because ‘pwiz::util::BinaryData::iterator’ has user-provided ‘pwiz::util::BinaryData::iterator::iterator(const pwiz::util::BinaryData::iterator&) [with T = long int]’ 113 | iterator(const iterator& rhs) : current_(rhs.current_) {} | ^~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.cpp:314:14: warning: implicitly-declared ‘constexpr pwiz::util::BinaryData::iterator& pwiz::util::BinaryData::iterator::operator=(const pwiz::util::BinaryData::iterator&)’ is deprecated [-Wdeprecated-copy] 314 | end_ = iterator(binaryData, false); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.hpp:113:9: note: because ‘pwiz::util::BinaryData::iterator’ has user-provided ‘pwiz::util::BinaryData::iterator::iterator(const pwiz::util::BinaryData::iterator&) [with T = long int]’ 113 | iterator(const iterator& rhs) : current_(rhs.current_) {} | ^~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.cpp:315:17: warning: implicitly-declared ‘constexpr pwiz::util::BinaryData::const_iterator& pwiz::util::BinaryData::const_iterator::operator=(const pwiz::util::BinaryData::const_iterator&)’ is deprecated [-Wdeprecated-copy] 315 | cbegin_ = const_iterator(binaryData, true); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.hpp:79:9: note: because ‘pwiz::util::BinaryData::const_iterator’ has user-provided ‘pwiz::util::BinaryData::const_iterator::const_iterator(const pwiz::util::BinaryData::const_iterator&) [with T = long int]’ 79 | const_iterator(const const_iterator& rhs) : current_(rhs.current_) {} | ^~~~~~~~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.cpp:316:15: warning: implicitly-declared ‘constexpr pwiz::util::BinaryData::const_iterator& pwiz::util::BinaryData::const_iterator::operator=(const pwiz::util::BinaryData::const_iterator&)’ is deprecated [-Wdeprecated-copy] 316 | cend_ = const_iterator(binaryData, false); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/pwiz/utility/misc/BinaryData.hpp:79:9: note: because ‘pwiz::util::BinaryData::const_iterator’ has user-provided ‘pwiz::util::BinaryData::const_iterator::const_iterator(const pwiz::util::BinaryData::const_iterator&) [with T = long int]’ 79 | const_iterator(const const_iterator& rhs) : current_(rhs.current_) {} | ^~~~~~~~~~~~~~ [ 96%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/IntegerSet.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/<>/obj-aarch64-linux-gnu/src -I/<>/src -I/<>/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/IntegerSet.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/IntegerSet.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/IntegerSet.cpp.o -c /<>/src/pwiz/utility/misc/IntegerSet.cpp In file included from /usr/include/boost/lexical_cast.hpp:26, from /<>/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /<>/src/pwiz/utility/misc/Environment.hpp:24, from /<>/src/pwiz/utility/misc/Std.hpp:29, from /<>/src/pwiz/utility/misc/IntegerSet.cpp:26: /usr/include/boost/iterator.hpp:10:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/src/pwiz/utility/misc/Std.hpp:31: /<>/src/pwiz/utility/misc/String.hpp: In lambda function: /<>/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] 87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); | ~~~~~~~~~~~~~~~~~~~~~^~~ /<>/src/pwiz/utility/misc/IntegerSet.cpp: In member function ‘void pwiz::util::IntegerSet::insert(Interval)’: /<>/src/pwiz/utility/misc/IntegerSet.cpp:138:79: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] 138 | if (eraseBegin != intervals_.end() && eraseBegin->begin <= interval.begin && eraseBegin->end >= interval.end || | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/pwiz/utility/misc/IntegerSet.cpp: In member function ‘bool pwiz::util::IntegerSet::Iterator::operator==(const pwiz::util::IntegerSet::Iterator&) const’: /<>/src/pwiz/utility/misc/IntegerSet.cpp:325:63: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] 325 | return (it_!=end_ && that.it_!=that.end_ && it_==that.it_ && value_==that.value_ || | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ [ 97%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/String.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/<>/obj-aarch64-linux-gnu/src -I/<>/src -I/<>/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/String.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/String.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/String.cpp.o -c /<>/src/pwiz/utility/misc/String.cpp In file included from /<>/src/pwiz/utility/misc/String.cpp:21: /<>/src/pwiz/utility/misc/String.hpp: In lambda function: /<>/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] 87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); | ~~~~~~~~~~~~~~~~~~~~~^~~ [ 98%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/Filesystem.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/<>/obj-aarch64-linux-gnu/src -I/<>/src -I/<>/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/Filesystem.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/Filesystem.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/Filesystem.cpp.o -c /<>/src/pwiz/utility/misc/Filesystem.cpp /<>/src/pwiz/utility/misc/Filesystem.cpp:54:21: warning: WIN32 is NOT defined 54 | #pragma GCC warning "WIN32 is NOT defined" | ^~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/src/pwiz/utility/misc/Filesystem.hpp:34, from /<>/src/pwiz/utility/misc/Filesystem.cpp:26: /<>/src/pwiz/utility/misc/String.hpp: In lambda function: /<>/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] 87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); | ~~~~~~~~~~~~~~~~~~~~~^~~ In file included from /usr/include/boost/function/detail/requires_cxx11.hpp:9, from /usr/include/boost/function/detail/prologue.hpp:12, from /usr/include/boost/function.hpp:30, from /usr/include/boost/algorithm/string/detail/find_iterator.hpp:18, from /usr/include/boost/algorithm/string/find_iterator.hpp:24, from /usr/include/boost/algorithm/string/iter_find.hpp:27, from /usr/include/boost/algorithm/string/split.hpp:16, from /usr/include/boost/algorithm/string.hpp:23, from /<>/src/pwiz/utility/misc/String.hpp:31: /usr/include/boost/iterator.hpp: At global scope: /usr/include/boost/iterator.hpp:10:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ /<>/src/pwiz/utility/misc/Filesystem.cpp: In function ‘void pwiz::util::force_close_handles_to_filepath(const std::string&, bool)’: /<>/src/pwiz/utility/misc/Filesystem.cpp:350:52: warning: unused parameter ‘filepath’ [-Wunused-parameter] 350 | force_close_handles_to_filepath(const std::string &filepath, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~ /<>/src/pwiz/utility/misc/Filesystem.cpp:351:38: warning: unused parameter ‘closeMemoryMappedSections’ [-Wunused-parameter] 351 | bool closeMemoryMappedSections) noexcept(true) | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/pwiz/utility/misc/Filesystem.cpp: In function ‘void pwiz::util::{anonymous}::copy_recursive(const boost::filesystem::path&, const boost::filesystem::path&)’: /<>/src/pwiz/utility/misc/Filesystem.cpp:686:22: warning: ‘void boost::filesystem::copy_directory(const path&, const path&)’ is deprecated: Use create_directory() instead [-Wdeprecated-declarations] 686 | bfs::copy_directory(from, to); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /<>/src/pwiz/utility/misc/Filesystem.hpp:36: /usr/include/boost/filesystem/operations.hpp:437:13: note: declared here 437 | inline void copy_directory(path const& from, path const& to) | ^~~~~~~~~~~~~~ /<>/src/pwiz/utility/misc/Filesystem.cpp: In function ‘void pwiz::util::{anonymous}::copy_recursive(const boost::filesystem::path&, const boost::filesystem::path&, boost::system::error_code&)’: /<>/src/pwiz/utility/misc/Filesystem.cpp:710:22: warning: ‘void boost::filesystem::copy_directory(const path&, const path&, boost::system::error_code&)’ is deprecated: Use create_directory() instead [-Wdeprecated-declarations] 710 | bfs::copy_directory(from, to, ec); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /usr/include/boost/filesystem/operations.hpp:443:13: note: declared here 443 | inline void copy_directory(path const& from, path const& to, system::error_code& ec) BOOST_NOEXCEPT | ^~~~~~~~~~~~~~ /<>/src/pwiz/utility/misc/Filesystem.cpp: In function ‘void pwiz::util::copy_directory(const boost::filesystem::path&, const boost::filesystem::path&, bool, boost::system::error_code*)’: /<>/src/pwiz/utility/misc/Filesystem.cpp:764:28: warning: ‘void boost::filesystem::copy_directory(const path&, const path&, boost::system::error_code&)’ is deprecated: Use create_directory() instead [-Wdeprecated-declarations] 764 | bfs::copy_directory(from, to, *ec); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /usr/include/boost/filesystem/operations.hpp:443:13: note: declared here 443 | inline void copy_directory(path const& from, path const& to, system::error_code& ec) BOOST_NOEXCEPT | ^~~~~~~~~~~~~~ /<>/src/pwiz/utility/misc/Filesystem.cpp:766:28: warning: ‘void boost::filesystem::copy_directory(const path&, const path&)’ is deprecated: Use create_directory() instead [-Wdeprecated-declarations] 766 | bfs::copy_directory(from, to); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /usr/include/boost/filesystem/operations.hpp:437:13: note: declared here 437 | inline void copy_directory(path const& from, path const& to) | ^~~~~~~~~~~~~~ /<>/src/pwiz/utility/misc/Filesystem.cpp: In function ‘void pwiz::util::check_path_length(const std::string&)’: /<>/src/pwiz/utility/misc/Filesystem.cpp:967:33: warning: unused parameter ‘path’ [-Wunused-parameter] 967 | check_path_length(const string &path) | ~~~~~~~~~~~~~~^~~~ [100%] Linking CXX shared library libpwizlite.so cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/pwizlite-shared.dir/link.txt --verbose=1 /usr/bin/aarch64-linux-gnu-g++ -fPIC -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libpwizlite.so.3 -o libpwizlite.so.3.0.8 "CMakeFiles/pwizlite-shared.dir/pwiz/data/common/ParamTypes.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/common/CVTranslator.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/common/cv.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/common/diff_std.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/ChromatogramList_mzML.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/LegacyAdapter.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSNumpress.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/References.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumInfo.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_BTDX.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_mzML.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_mzXML.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Version.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/BinaryDataEncoder.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/DefaultReaderList.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/IO.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Index_mzML.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSData.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSDataFile.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Reader.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_MGF.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_MSn.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_mzML.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_mzXML.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumListBase.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_MGF.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_MSn.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumWorkerThreads.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/mzmlb/Connection_mzMLb.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/utility/minimxml/SAXParser.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/utility/minimxml/XMLWriter.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/Base64.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/IterationListener.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/SHA1.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/SHA1Calculator.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/random_access_compressed_ifstream.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/BinaryData.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/IntegerSet.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/String.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/Filesystem.cpp.o" -Wl,-rpath,/usr/lib/aarch64-linux-gnu/hdf5/serial: /usr/lib/aarch64-linux-gnu/libboost_iostreams.so.1.83.0 /usr/lib/aarch64-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/aarch64-linux-gnu/libboost_thread.so.1.83.0 /usr/lib/aarch64-linux-gnu/libboost_chrono.so.1.83.0 /usr/lib/aarch64-linux-gnu/libz.so -Wl,--no-as-needed /usr/lib/aarch64-linux-gnu/hdf5/serial/libhdf5_cpp.so -Wl,--as-needed /usr/lib/aarch64-linux-gnu/libboost_atomic.so.1.83.0 cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/cmake -E cmake_symlink_library libpwizlite.so.3.0.8 libpwizlite.so.3 libpwizlite.so make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' [100%] Built target pwizlite-shared make[2]: Leaving directory '/<>/obj-aarch64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /<>/obj-aarch64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/<>/obj-aarch64-linux-gnu' dh: command-omitted: The call to "dh_auto_test -a -O--build-system=cmake" was omitted due to "DEB_BUILD_OPTIONS=nocheck" create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh binary-arch --build-system=cmake dh_testroot -a -O--build-system=cmake dh_prep -a -O--build-system=cmake dh_auto_install -a -O--build-system=cmake cd obj-aarch64-linux-gnu && make -j1 install DESTDIR=/<>/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/<>/obj-aarch64-linux-gnu' /usr/bin/cmake -S/<> -B/<>/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/<>/obj-aarch64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/<>/obj-aarch64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "release" -- Installing: /<>/debian/tmp/usr/lib/aarch64-linux-gnu/cmake/pwizlite/FindPwizLite.cmake -- Installing: /<>/debian/tmp/usr/lib/aarch64-linux-gnu/cmake/pwizlite/PwizLiteConfig.cmake -- Installing: /<>/debian/tmp/usr/lib/aarch64-linux-gnu/pkgconfig/libpwizlite.pc -- Installing: /<>/debian/tmp/usr/lib/aarch64-linux-gnu/libpwizlite.so.3.0.8 -- Installing: /<>/debian/tmp/usr/lib/aarch64-linux-gnu/libpwizlite.so.3 -- Set non-toolchain portion of runtime path of "/<>/debian/tmp/usr/lib/aarch64-linux-gnu/libpwizlite.so.3.0.8" to "" -- Installing: /<>/debian/tmp/usr/lib/aarch64-linux-gnu/libpwizlite.a make[1]: Leaving directory '/<>/obj-aarch64-linux-gnu' dh_install -a -O--build-system=cmake dh_installdocs -a -O--build-system=cmake dh_installchangelogs -a -O--build-system=cmake dh_installman -a -O--build-system=cmake dh_installsystemduser -a -O--build-system=cmake dh_lintian -a -O--build-system=cmake dh_perl -a -O--build-system=cmake dh_link -a -O--build-system=cmake dh_strip_nondeterminism -a -O--build-system=cmake dh_compress -a -O--build-system=cmake dh_fixperms -a -O--build-system=cmake dh_missing -a -O--build-system=cmake dh_dwz -a -O--build-system=cmake dh_strip -a -O--build-system=cmake dh_makeshlibs -a -O--build-system=cmake dh_shlibdeps -a -O--build-system=cmake dpkg-shlibdeps: warning: symbol H5Dread used by debian/libpwizlite3t64/usr/lib/aarch64-linux-gnu/libpwizlite.so.3.0.8 found in none of the libraries dpkg-shlibdeps: warning: symbol H5T_NATIVE_LLONG_g used by debian/libpwizlite3t64/usr/lib/aarch64-linux-gnu/libpwizlite.so.3.0.8 found in none of the libraries dpkg-shlibdeps: warning: symbol H5T_NATIVE_LONG_g used by debian/libpwizlite3t64/usr/lib/aarch64-linux-gnu/libpwizlite.so.3.0.8 found in none of the libraries dpkg-shlibdeps: warning: symbol H5Tclose used by debian/libpwizlite3t64/usr/lib/aarch64-linux-gnu/libpwizlite.so.3.0.8 found in none of the libraries dpkg-shlibdeps: warning: symbol H5Pset_chunk used by debian/libpwizlite3t64/usr/lib/aarch64-linux-gnu/libpwizlite.so.3.0.8 found in none of the libraries dpkg-shlibdeps: warning: symbol H5Dclose used by debian/libpwizlite3t64/usr/lib/aarch64-linux-gnu/libpwizlite.so.3.0.8 found in none of the libraries dpkg-shlibdeps: warning: symbol H5Pcreate used by debian/libpwizlite3t64/usr/lib/aarch64-linux-gnu/libpwizlite.so.3.0.8 found in none of the libraries dpkg-shlibdeps: warning: symbol H5Screate_simple used by debian/libpwizlite3t64/usr/lib/aarch64-linux-gnu/libpwizlite.so.3.0.8 found in none of the libraries dpkg-shlibdeps: warning: symbol H5Pset_fletcher32 used by debian/libpwizlite3t64/usr/lib/aarch64-linux-gnu/libpwizlite.so.3.0.8 found in none of the libraries dpkg-shlibdeps: warning: symbol H5T_NATIVE_DOUBLE_g used by debian/libpwizlite3t64/usr/lib/aarch64-linux-gnu/libpwizlite.so.3.0.8 found in none of the libraries dpkg-shlibdeps: warning: 43 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/libpwizlite3t64/usr/lib/aarch64-linux-gnu/libpwizlite.so.3.0.8 was not linked against libhdf5_serial_cpp.so.103 (it uses none of the library's symbols) dh_installdeb -a -O--build-system=cmake dh_gencontrol -a -O--build-system=cmake dh_md5sums -a -O--build-system=cmake dh_builddeb -a -O--build-system=cmake dpkg-deb: building package 'libpwizlite-dev' in '../libpwizlite-dev_3.0.8-1_arm64.deb'. dpkg-deb: building package 'libpwizlite3t64' in '../libpwizlite3t64_3.0.8-1_arm64.deb'. dpkg-deb: building package 'libpwizlite3t64-dbgsym' in '../libpwizlite3t64-dbgsym_3.0.8-1_arm64.deb'. dpkg-genbuildinfo --build=any -O../libpwizlite_3.0.8-1_arm64.buildinfo dpkg-genchanges --build=any -O../libpwizlite_3.0.8-1_arm64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2024-05-31T10:36:00Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ libpwizlite_3.0.8-1_arm64.changes: ---------------------------------- Format: 1.8 Date: Thu, 16 May 2024 14:24:07 +0200 Source: libpwizlite Binary: libpwizlite-dev libpwizlite3t64 libpwizlite3t64-dbgsym Built-For-Profiles: cross nocheck Architecture: arm64 Version: 3.0.8-1 Distribution: unstable Urgency: low Maintainer: The Debichem Group Changed-By: Filippo Rusconi Description: libpwizlite-dev - Library to load mzML/mzXML files (dev files) libpwizlite3t64 - Library to load mzML/mzXML files (runtime files) Changes: libpwizlite (3.0.8-1) unstable; urgency=low . * New upstream version with small glitch. * Upload to unstable. Checksums-Sha1: b99d6241c6b3a5a8ff758c72281dd296114e5466 1201896 libpwizlite-dev_3.0.8-1_arm64.deb cbbbae12b9f92aa837e9aa2b95c7743bb90893cd 12127148 libpwizlite3t64-dbgsym_3.0.8-1_arm64.deb c86a4c2709094319e6f7cf126d47b494da0f82a8 788492 libpwizlite3t64_3.0.8-1_arm64.deb ee64394c336a017e60c95d91746cd0e68a0d67db 8381 libpwizlite_3.0.8-1_arm64.buildinfo Checksums-Sha256: e1a13050af5f46dc8395c650e3fa051aa8ad6658463299b6f8dab1e80a1a89e4 1201896 libpwizlite-dev_3.0.8-1_arm64.deb d5d4a255f8ddf0ae83027844cc41a4b514832edeaba0c84dfbabb47a96c565e4 12127148 libpwizlite3t64-dbgsym_3.0.8-1_arm64.deb ee3200e8ee6d1f665781de18bbfe70dfac4c0766f5df94d04af8356d2c2be0ea 788492 libpwizlite3t64_3.0.8-1_arm64.deb d791a103d4adeb8c562cc9d57cfb390fa8ce84ee2129840248fa5aa85405f754 8381 libpwizlite_3.0.8-1_arm64.buildinfo Files: 7bc7f84dbed9480dd9ac2f404e49cea7 1201896 libdevel optional libpwizlite-dev_3.0.8-1_arm64.deb f7fcfeb105999827ae6004d31a38a12f 12127148 debug optional libpwizlite3t64-dbgsym_3.0.8-1_arm64.deb 456a154002dd2496f1c0b39ed281e0f7 788492 libs optional libpwizlite3t64_3.0.8-1_arm64.deb 37d2404926b19d844dbc95e85d49489f 8381 libs optional libpwizlite_3.0.8-1_arm64.buildinfo +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: libpwizlite Binary: libpwizlite-dev libpwizlite3t64 libpwizlite3t64-dbgsym Architecture: arm64 Version: 3.0.8-1 Checksums-Md5: 7bc7f84dbed9480dd9ac2f404e49cea7 1201896 libpwizlite-dev_3.0.8-1_arm64.deb f7fcfeb105999827ae6004d31a38a12f 12127148 libpwizlite3t64-dbgsym_3.0.8-1_arm64.deb 456a154002dd2496f1c0b39ed281e0f7 788492 libpwizlite3t64_3.0.8-1_arm64.deb Checksums-Sha1: b99d6241c6b3a5a8ff758c72281dd296114e5466 1201896 libpwizlite-dev_3.0.8-1_arm64.deb cbbbae12b9f92aa837e9aa2b95c7743bb90893cd 12127148 libpwizlite3t64-dbgsym_3.0.8-1_arm64.deb c86a4c2709094319e6f7cf126d47b494da0f82a8 788492 libpwizlite3t64_3.0.8-1_arm64.deb Checksums-Sha256: e1a13050af5f46dc8395c650e3fa051aa8ad6658463299b6f8dab1e80a1a89e4 1201896 libpwizlite-dev_3.0.8-1_arm64.deb d5d4a255f8ddf0ae83027844cc41a4b514832edeaba0c84dfbabb47a96c565e4 12127148 libpwizlite3t64-dbgsym_3.0.8-1_arm64.deb ee3200e8ee6d1f665781de18bbfe70dfac4c0766f5df94d04af8356d2c2be0ea 788492 libpwizlite3t64_3.0.8-1_arm64.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Fri, 31 May 2024 10:35:59 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs Installed-Build-Depends: autoconf (= 2.71-3), automake (= 1:1.16.5-1.3), autopoint (= 0.21-14), autotools-dev (= 20220109.1), base-files (= 13.2), base-passwd (= 3.6.3), bash (= 5.2.21-2+b1), binutils (= 2.42-4), binutils-common (= 2.42-4), binutils-x86-64-linux-gnu (= 2.42-4), bsdextrautils (= 2.40.1-4), bsdutils (= 1:2.40.1-4), build-essential (= 12.10), bzip2 (= 1.0.8-5.1), cmake (= 3.29.3-1+b1), cmake-data (= 3.29.3-1), coreutils (= 9.4-3.1), cpp (= 4:13.2.0-7), cpp-13 (= 13.2.0-25), cpp-13-x86-64-linux-gnu (= 13.2.0-25), cpp-x86-64-linux-gnu (= 4:13.2.0-7), dash (= 0.5.12-8), debconf (= 1.5.86), debhelper (= 13.15.3), debianutils (= 5.17), dh-autoreconf (= 20), dh-exec (= 0.30), dh-strip-nondeterminism (= 1.14.0-1), diffutils (= 1:3.10-1), docutils-common (= 0.20.1+dfsg-3), dpkg (= 1.22.6), dpkg-dev (= 1.22.6), dwz (= 0.15-1+b1), file (= 1:5.45-3), findutils (= 4.9.0-6), g++ (= 4:13.2.0-7), g++-13 (= 13.2.0-25), g++-13-x86-64-linux-gnu (= 13.2.0-25), g++-x86-64-linux-gnu (= 4:13.2.0-7), gcc (= 4:13.2.0-7), gcc-13 (= 13.2.0-25), gcc-13-base (= 13.2.0-25), gcc-13-x86-64-linux-gnu (= 13.2.0-25), gcc-14-base (= 14.1.0-1), gcc-x86-64-linux-gnu (= 4:13.2.0-7), gettext (= 0.21-14+b1), gettext-base (= 0.21-14+b1), grep (= 3.11-4), groff-base (= 1.23.0-4), gzip (= 1.12-1.1), hdf5-helpers (= 1.10.10+repack-3.3), hostname (= 3.23+nmu2), icu-devtools (= 72.1-4+b1), init-system-helpers (= 1.66), intltool-debian (= 0.35.0+20060710.6), libacl1 (= 2.3.2-2), libaec-dev (= 1.1.3-1), libaec0 (= 1.1.3-1), libarchive-zip-perl (= 1.68-1), libarchive13t64 (= 3.7.2-2), libasan8 (= 14.1.0-1), libatomic1 (= 14.1.0-1), libattr1 (= 1:2.5.2-1), libaudit-common (= 1:3.1.2-2.1), libaudit1 (= 1:3.1.2-2.1), libbinutils (= 2.42-4), libblkid1 (= 2.40.1-4), libboost-atomic1.83-dev (= 1.83.0-3), libboost-atomic1.83.0 (= 1.83.0-3), libboost-chrono-dev (= 1.83.0.2+b2), libboost-chrono1.83-dev (= 1.83.0-3), libboost-chrono1.83.0t64 (= 1.83.0-3), libboost-date-time1.83-dev (= 1.83.0-3), libboost-date-time1.83.0 (= 1.83.0-3), libboost-dev (= 1.83.0.2+b2), libboost-filesystem-dev (= 1.83.0.2+b2), libboost-filesystem1.83-dev (= 1.83.0-3), libboost-filesystem1.83.0 (= 1.83.0-3), libboost-iostreams-dev (= 1.83.0.2+b2), libboost-iostreams1.83-dev (= 1.83.0-3), libboost-iostreams1.83.0 (= 1.83.0-3), libboost-regex1.83-dev (= 1.83.0-3), libboost-regex1.83.0 (= 1.83.0-3), libboost-serialization1.83-dev (= 1.83.0-3), libboost-serialization1.83.0 (= 1.83.0-3), libboost-system1.83-dev (= 1.83.0-3), libboost-system1.83.0 (= 1.83.0-3), libboost-thread-dev (= 1.83.0.2+b2), libboost-thread1.83-dev (= 1.83.0-3), libboost-thread1.83.0 (= 1.83.0-3), libboost1.83-dev (= 1.83.0-3), libbrotli1 (= 1.1.0-2+b3), libbz2-1.0 (= 1.0.8-5.1), libc-bin (= 2.38-11), libc-dev-bin (= 2.38-11), libc6 (= 2.38-11), libc6-dev (= 2.38-11), libcap-ng0 (= 0.8.5-1), libcap2 (= 1:2.66-5), libcc1-0 (= 14.1.0-1), libcom-err2 (= 1.47.1-1), libcrypt-dev (= 1:4.4.36-4), libcrypt1 (= 1:4.4.36-4), libctf-nobfd0 (= 2.42-4), libctf0 (= 2.42-4), libcurl4-openssl-dev (= 8.8.0-1), libcurl4t64 (= 8.8.0-1), libdb5.3t64 (= 5.3.28+dfsg2-7), libdebconfclient0 (= 0.272), libdebhelper-perl (= 13.15.3), libdpkg-perl (= 1.22.6), libelf1t64 (= 0.191-1+b1), libexpat1 (= 2.6.2-1), libffi8 (= 3.4.6-1), libfile-stripnondeterminism-perl (= 1.14.0-1), libgcc-13-dev (= 13.2.0-25), libgcc-s1 (= 14.1.0-1), libgdbm-compat4t64 (= 1.23-5.1+b1), libgdbm6t64 (= 1.23-5.1+b1), libgfortran5 (= 14.1.0-1), libgmp10 (= 2:6.3.0+dfsg-2+b1), libgnutls30t64 (= 3.8.5-2), libgomp1 (= 14.1.0-1), libgprofng0 (= 2.42-4), libgssapi-krb5-2 (= 1.20.1-6+b1), libhdf5-103-1t64 (= 1.10.10+repack-3.3), libhdf5-cpp-103-1t64 (= 1.10.10+repack-3.3), libhdf5-dev (= 1.10.10+repack-3.3), libhdf5-fortran-102t64 (= 1.10.10+repack-3.3), libhdf5-hl-100t64 (= 1.10.10+repack-3.3), libhdf5-hl-cpp-100t64 (= 1.10.10+repack-3.3), libhdf5-hl-fortran-100t64 (= 1.10.10+repack-3.3), libhogweed6t64 (= 3.9.1-2.2), libhwasan0 (= 14.1.0-1), libicu-dev (= 72.1-4+b1), libicu72 (= 72.1-4+b1), libidn2-0 (= 2.3.7-2), libisl23 (= 0.26-3+b2), libitm1 (= 14.1.0-1), libjansson4 (= 2.14-2+b2), libjpeg-dev (= 1:2.1.5-3), libjpeg62-turbo (= 1:2.1.5-3), libjpeg62-turbo-dev (= 1:2.1.5-3), libjsoncpp25 (= 1.9.5-6+b2), libk5crypto3 (= 1.20.1-6+b1), libkeyutils1 (= 1.6.3-3), libkrb5-3 (= 1.20.1-6+b1), libkrb5support0 (= 1.20.1-6+b1), libldap-2.5-0 (= 2.5.17+dfsg-1), liblsan0 (= 14.1.0-1), liblz4-1 (= 1.9.4-2), liblzma5 (= 5.6.1+really5.4.5-1), libmagic-mgc (= 1:5.45-3), libmagic1t64 (= 1:5.45-3), libmd0 (= 1.1.0-2), libmount1 (= 2.40.1-4), libmpc3 (= 1.3.1-1+b2), libmpfr6 (= 4.2.1-1+b1), libncursesw6 (= 6.5-2), libnettle8t64 (= 3.9.1-2.2), libnghttp2-14 (= 1.61.0-1+b1), libp11-kit0 (= 0.25.3-5), libpam-modules (= 1.5.3-7), libpam-modules-bin (= 1.5.3-7), libpam-runtime (= 1.5.3-7), libpam0g (= 1.5.3-7), libpcre2-8-0 (= 10.42-4+b1), libperl5.38t64 (= 5.38.2-5), libpipeline1 (= 1.5.7-2), libproc2-0 (= 2:4.0.4-4), libpsl5t64 (= 0.21.2-1.1), libpython3-stdlib (= 3.11.8-1), libpython3.11-minimal (= 3.11.9-1), libpython3.11-stdlib (= 3.11.9-1), libquadmath0 (= 14.1.0-1), libreadline8t64 (= 8.2-4), librhash0 (= 1.4.3-3+b1), librtmp1 (= 2.4+20151223.gitfa8646d.1-2+b4), libsasl2-2 (= 2.1.28+dfsg1-6), libsasl2-modules-db (= 2.1.28+dfsg1-6), libseccomp2 (= 2.5.5-1), libselinux1 (= 3.5-2+b2), libsframe1 (= 2.42-4), libsmartcols1 (= 2.40.1-4), libsqlite3-0 (= 3.45.3-1), libssh2-1t64 (= 1.11.0-5), libssl-dev (= 3.2.1-3), libssl3t64 (= 3.2.1-3), libstdc++-13-dev (= 13.2.0-25), libstdc++6 (= 14.1.0-1), libsystemd0 (= 256~rc3-6), libsz2 (= 1.1.3-1), libtasn1-6 (= 4.19.0-3+b2), libtinfo6 (= 6.5-2), libtool (= 2.4.7-7), libtsan2 (= 14.1.0-1), libubsan1 (= 14.1.0-1), libuchardet0 (= 0.0.8-1+b1), libudev1 (= 256~rc3-6), libunistring5 (= 1.2-1), libuuid1 (= 2.40.1-4), libuv1t64 (= 1.48.0-4), libxml2 (= 2.12.7+dfsg-2), libzstd1 (= 1.5.5+dfsg2-2), linux-libc-dev (= 6.8.11-1), login (= 1:4.13+dfsg1-4), m4 (= 1.4.19-4), make (= 4.3-4.1), man-db (= 2.12.1-1), mawk (= 1.3.4.20240123-1), media-types (= 10.1.0), ncurses-base (= 6.5-2), ncurses-bin (= 6.5-2), netbase (= 6.4), patch (= 2.7.6-7), perl (= 5.38.2-5), perl-base (= 5.38.2-5), perl-modules-5.38 (= 5.38.2-5), po-debconf (= 1.0.21+nmu1), procps (= 2:4.0.4-4), python3 (= 3.11.8-1), python3-docutils (= 0.20.1+dfsg-3), python3-minimal (= 3.11.8-1), python3-roman (= 3.3-3), python3.11 (= 3.11.9-1), python3.11-minimal (= 3.11.9-1), readline-common (= 8.2-4), rpcsvc-proto (= 1.4.3-1), sed (= 4.9-2), sensible-utils (= 0.0.22), sgml-base (= 1.31), sysvinit-utils (= 3.09-1), tar (= 1.35+dfsg-3), tzdata (= 2024a-4), usr-is-merged (= 39), util-linux (= 2.40.1-4), xml-core (= 0.19), xz-utils (= 5.6.1+really5.4.5-1), zlib1g (= 1:1.3.dfsg+really1.3.1-1), zlib1g-dev (= 1:1.3.dfsg+really1.3.1-1) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="en_US.UTF-8" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1715862247" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ libpwizlite-dev_3.0.8-1_arm64.deb --------------------------------- new Debian package, version 2.0. size 1201896 bytes: control archive=5360 bytes. 719 bytes, 20 lines control 14850 bytes, 165 lines md5sums Package: libpwizlite-dev Source: libpwizlite Version: 3.0.8-1 Architecture: arm64 Maintainer: The Debichem Group Installed-Size: 11842 Depends: libpwizlite3t64 (= 3.0.8-1) Replaces: libpwizlite-dev (<< 3.0.8-1) Section: libdevel Priority: optional Multi-Arch: same Homepage: https://salsa.debian.org/debichem-team/libpwizlite Description: Library to load mzML/mzXML files (dev files) This library is a dumbed-down version of the Proteowizard library. This library only contains the required features to load standard mzML/mzXML mass spectrometry data files. . See http://proteowizard.sourceforge.net/ for the original project. . This package ships the development files. drwxr-xr-x root/root 0 2024-05-16 12:24 ./ drwxr-xr-x root/root 0 2024-05-16 12:24 ./usr/ drwxr-xr-x root/root 0 2024-05-16 12:24 ./usr/include/ drwxr-xr-x root/root 0 2024-05-16 12:24 ./usr/include/pwizlite/ drwxr-xr-x root/root 0 2024-05-16 12:24 ./usr/include/pwizlite/boost/ -rw-r--r-- root/root 643 2024-05-16 12:24 ./usr/include/pwizlite/boost/enum.hpp drwxr-xr-x root/root 0 2024-05-16 12:24 ./usr/include/pwizlite/boost/enum/ -rw-r--r-- root/root 3056 2024-05-16 12:24 ./usr/include/pwizlite/boost/enum/base.hpp -rw-r--r-- root/root 7534 2024-05-16 12:24 ./usr/include/pwizlite/boost/enum/bitfield.hpp -rw-r--r-- root/root 1987 2024-05-16 12:24 ./usr/include/pwizlite/boost/enum/iterator.hpp -rw-r--r-- root/root 7533 2024-05-16 12:24 ./usr/include/pwizlite/boost/enum/macros.hpp -rw-r--r-- root/root 1923 2024-05-16 12:24 ./usr/include/pwizlite/boost/foreach_field.hpp drwxr-xr-x root/root 0 2024-05-16 12:24 ./usr/include/pwizlite/boost/iostreams/ -rw-r--r-- root/root 11196 2024-05-16 12:24 ./usr/include/pwizlite/boost/iostreams/arbitrary_positional_facade.hpp drwxr-xr-x root/root 0 2024-05-16 12:24 ./usr/include/pwizlite/boost/iostreams/filter/ -rw-r--r-- root/root 8739 2024-05-16 12:24 ./usr/include/pwizlite/boost/iostreams/filter/base64.hpp drwxr-xr-x root/root 0 2024-05-16 12:24 ./usr/include/pwizlite/boost/nowide/ -rw-r--r-- root/root 4719 2024-05-16 12:24 ./usr/include/pwizlite/boost/nowide/args.hpp -rw-r--r-- root/root 3605 2024-05-16 12:24 ./usr/include/pwizlite/boost/nowide/cenv.hpp -rw-r--r-- root/root 1509 2024-05-16 12:24 ./usr/include/pwizlite/boost/nowide/config.hpp -rw-r--r-- root/root 5233 2024-05-16 12:24 ./usr/include/pwizlite/boost/nowide/convert.hpp -rw-r--r-- root/root 2482 2024-05-16 12:24 ./usr/include/pwizlite/boost/nowide/cstdio.hpp -rw-r--r-- root/root 435 2024-05-16 12:24 ./usr/include/pwizlite/boost/nowide/cstdlib.hpp -rw-r--r-- root/root 11864 2024-05-16 12:24 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-rw-r--r-- root/root 11627 2024-05-16 12:24 ./usr/include/pwizlite/pwiz/utility/misc/virtual_map.hpp drwxr-xr-x root/root 0 2024-05-16 12:24 ./usr/lib/ drwxr-xr-x root/root 0 2024-05-16 12:24 ./usr/lib/aarch64-linux-gnu/ drwxr-xr-x root/root 0 2024-05-16 12:24 ./usr/lib/aarch64-linux-gnu/cmake/ drwxr-xr-x root/root 0 2024-05-16 12:24 ./usr/lib/aarch64-linux-gnu/cmake/pwizlite/ -rw-r--r-- root/root 770 2024-05-15 21:33 ./usr/lib/aarch64-linux-gnu/cmake/pwizlite/FindPwizLite.cmake -rw-r--r-- root/root 501 2024-05-16 12:24 ./usr/lib/aarch64-linux-gnu/cmake/pwizlite/PwizLiteConfig.cmake -rw-r--r-- root/root 10382468 2024-05-16 12:24 ./usr/lib/aarch64-linux-gnu/libpwizlite.a lrwxrwxrwx root/root 0 2024-05-16 12:24 ./usr/lib/aarch64-linux-gnu/libpwizlite.so -> libpwizlite.so.3.0.8 drwxr-xr-x root/root 0 2024-05-16 12:24 ./usr/lib/aarch64-linux-gnu/pkgconfig/ -rw-r--r-- root/root 227 2024-05-16 12:24 ./usr/lib/aarch64-linux-gnu/pkgconfig/libpwizlite.pc drwxr-xr-x root/root 0 2024-05-16 12:24 ./usr/share/ drwxr-xr-x root/root 0 2024-05-16 12:24 ./usr/share/doc/ drwxr-xr-x root/root 0 2024-05-16 12:24 ./usr/share/doc/libpwizlite-dev/ -rw-r--r-- root/root 1475 2024-05-16 12:24 ./usr/share/doc/libpwizlite-dev/changelog.Debian.gz -rw-r--r-- root/root 15134 2024-05-16 12:24 ./usr/share/doc/libpwizlite-dev/copyright libpwizlite3t64-dbgsym_3.0.8-1_arm64.deb ---------------------------------------- new Debian package, version 2.0. size 12127148 bytes: control archive=556 bytes. 404 bytes, 13 lines control 106 bytes, 1 lines md5sums Package: libpwizlite3t64-dbgsym Source: libpwizlite Version: 3.0.8-1 Auto-Built-Package: debug-symbols Architecture: arm64 Maintainer: The Debichem Group Installed-Size: 12530 Depends: libpwizlite3t64 (= 3.0.8-1) Section: debug Priority: optional Multi-Arch: same Description: debug symbols for libpwizlite3t64 Build-Ids: baf47ccb7cf78b78428b07db5955d609d7159ccd drwxr-xr-x root/root 0 2024-05-16 12:24 ./ drwxr-xr-x root/root 0 2024-05-16 12:24 ./usr/ drwxr-xr-x root/root 0 2024-05-16 12:24 ./usr/lib/ drwxr-xr-x root/root 0 2024-05-16 12:24 ./usr/lib/debug/ drwxr-xr-x root/root 0 2024-05-16 12:24 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2024-05-16 12:24 ./usr/lib/debug/.build-id/ba/ -rw-r--r-- root/root 12819680 2024-05-16 12:24 ./usr/lib/debug/.build-id/ba/f47ccb7cf78b78428b07db5955d609d7159ccd.debug drwxr-xr-x root/root 0 2024-05-16 12:24 ./usr/share/ drwxr-xr-x root/root 0 2024-05-16 12:24 ./usr/share/doc/ lrwxrwxrwx root/root 0 2024-05-16 12:24 ./usr/share/doc/libpwizlite3t64-dbgsym -> libpwizlite3t64 libpwizlite3t64_3.0.8-1_arm64.deb --------------------------------- new Debian package, version 2.0. size 788492 bytes: control archive=1108 bytes. 1040 bytes, 22 lines control 387 bytes, 5 lines md5sums 41 bytes, 1 lines shlibs 68 bytes, 2 lines triggers Package: libpwizlite3t64 Source: libpwizlite Version: 3.0.8-1 Architecture: arm64 Maintainer: The Debichem Group Installed-Size: 4727 Depends: libboost-chrono1.83.0t64 (>= 1.83.0), libboost-filesystem1.83.0 (>= 1.83.0), libboost-iostreams1.83.0 (>= 1.83.0), libboost-thread1.83.0 (>= 1.83.0), libc6 (>= 2.38), libgcc-s1 (>= 3.0), libhdf5-cpp-103-1t64 (>= 1.10.5), libstdc++6 (>= 13.1), zlib1g (>= 1:1.2.0) Breaks: libpwizlite3 (<< 3.0.8-1) Replaces: libpwizlite3, libpwizlite3t64 (<< 3.0.8-1) Provides: libpwizlite3 (= 3.0.8-1) Section: libs Priority: optional Multi-Arch: same Homepage: https://salsa.debian.org/debichem-team/libpwizlite Description: Library to load mzML/mzXML files (runtime files) This library is a dumbed-down version of the Proteowizard library. This library only contains the required features to load standard mzML/mzXML mass spectrometry data files. . See http://proteowizard.sourceforge.net/ for the original project. . This package ships the runtime library files. drwxr-xr-x root/root 0 2024-05-16 12:24 ./ drwxr-xr-x root/root 0 2024-05-16 12:24 ./usr/ drwxr-xr-x root/root 0 2024-05-16 12:24 ./usr/lib/ drwxr-xr-x root/root 0 2024-05-16 12:24 ./usr/lib/aarch64-linux-gnu/ lrwxrwxrwx root/root 0 2024-05-16 12:24 ./usr/lib/aarch64-linux-gnu/libpwizlite.so.3 -> libpwizlite.so.3.0.8 -rw-r--r-- root/root 4804144 2024-05-16 12:24 ./usr/lib/aarch64-linux-gnu/libpwizlite.so.3.0.8 drwxr-xr-x root/root 0 2024-05-16 12:24 ./usr/share/ drwxr-xr-x root/root 0 2024-05-16 12:24 ./usr/share/doc/ drwxr-xr-x root/root 0 2024-05-16 12:24 ./usr/share/doc/libpwizlite3t64/ -rw-r--r-- root/root 1475 2024-05-16 12:24 ./usr/share/doc/libpwizlite3t64/changelog.Debian.gz -rw-r--r-- root/root 15134 2024-05-16 12:24 ./usr/share/doc/libpwizlite3t64/copyright drwxr-xr-x root/root 0 2024-05-16 12:24 ./usr/share/lintian/ drwxr-xr-x root/root 0 2024-05-16 12:24 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 64 2024-05-16 12:24 ./usr/share/lintian/overrides/libpwizlite3t64 drwxr-xr-x root/root 0 2024-05-16 12:24 ./usr/share/man/ drwxr-xr-x root/root 0 2024-05-16 12:24 ./usr/share/man/man3/ -rw-r--r-- root/root 1150 2024-05-16 12:24 ./usr/share/man/man3/libpwizlite.3.gz lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:amd64 Filtered Build-Depends: lintian:amd64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/apt_archive/sbuild-build-depends-lintian-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [615 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [1483 B] Get:5 copy:/<>/apt_archive ./ Packages [1563 B] Fetched 3661 B in 0s (0 B/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Execute external solver... The following package was automatically installed and is no longer required: mount Use 'apt autoremove' to remove it. The following additional packages will be installed: ca-certificates diffstat gpg gpgconf iso-codes libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libberkeleydb-perl libcapture-tiny-perl libcgi-pm-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdata-validate-ip-perl libdata-validate-uri-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libencode-locale-perl libexception-class-perl libfile-basedir-perl libfile-find-rule-perl libfile-listing-perl libfont-ttf-perl libhtml-form-perl libhtml-html5-entities-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tokeparser-simple-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libimport-into-perl libio-html-perl libio-interactive-perl libio-socket-ssl-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-someutils-perl liblist-utilsby-perl liblwp-mediatypes-perl liblwp-protocol-https-perl liblz1 liblzo2-2 libmarkdown2 libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnet-http-perl libnet-ipv6addr-perl libnet-netmask-perl libnet-ssleay-perl libnetaddr-ip-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl libregexp-wildcards-perl librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libsyntax-keyword-try-perl libterm-readkey-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libwww-mechanize-perl libwww-perl libwww-robotrules-perl libxs-parse-keyword-perl libyaml-0-2 libyaml-libyaml-perl lintian lzop openssl patchutils perl-openssl-defaults plzip t1utils unzip Suggested packages: isoquery libxml-parser-perl libdata-dump-perl libcrypt-ssleay-perl libscalar-number-perl libbareword-filehandles-perl libindirect-perl libmultidimensional-perl libbusiness-isbn-perl libregexp-ipv6-perl libauthen-ntlm-perl binutils-multiarch libtext-template-perl zip Recommended packages: gnupg libcgi-fast-perl libhtml-format-perl libio-compress-brotli-perl liblist-someutils-xs-perl libfreezethaw-perl libmath-base85-perl libsocket6-perl libpackage-stash-xs-perl libxstring-perl libdata-dump-perl libhttp-daemon-perl libmailtools-perl The following NEW packages will be installed: ca-certificates diffstat gpg gpgconf iso-codes libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libberkeleydb-perl libcapture-tiny-perl libcgi-pm-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdata-validate-ip-perl libdata-validate-uri-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libencode-locale-perl libexception-class-perl libfile-basedir-perl libfile-find-rule-perl libfile-listing-perl libfont-ttf-perl libhtml-form-perl libhtml-html5-entities-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tokeparser-simple-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libimport-into-perl libio-html-perl libio-interactive-perl libio-socket-ssl-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-someutils-perl liblist-utilsby-perl liblwp-mediatypes-perl liblwp-protocol-https-perl liblz1 liblzo2-2 libmarkdown2 libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnet-http-perl libnet-ipv6addr-perl libnet-netmask-perl libnet-ssleay-perl libnetaddr-ip-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl libregexp-wildcards-perl librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libsyntax-keyword-try-perl libterm-readkey-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libwww-mechanize-perl libwww-perl libwww-robotrules-perl libxs-parse-keyword-perl libyaml-0-2 libyaml-libyaml-perl lintian lzop openssl patchutils perl-openssl-defaults plzip sbuild-build-depends-lintian-dummy:arm64 t1utils unzip 0 upgraded, 125 newly installed, 0 to remove and 0 not upgraded. Need to get 11.7 MB of archives. After this operation, 48.4 MB of additional disk space will be used. 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all 1.05-3 [12.9 kB] Get:54 http://localhost:3142/debian sid/main amd64 libipc-system-simple-perl all 1.30-2 [26.8 kB] Get:55 http://localhost:3142/debian sid/main amd64 libfile-basedir-perl all 0.09-2 [15.1 kB] Get:56 http://localhost:3142/debian sid/main amd64 libnumber-compare-perl all 0.03-3 [6332 B] Get:57 http://localhost:3142/debian sid/main amd64 libtext-glob-perl all 0.11-3 [7676 B] Get:58 http://localhost:3142/debian sid/main amd64 libfile-find-rule-perl all 0.34-3 [26.6 kB] Get:59 http://localhost:3142/debian sid/main amd64 libtimedate-perl all 2.3300-2 [39.3 kB] Get:60 http://localhost:3142/debian sid/main amd64 libhttp-date-perl all 6.06-1 [10.7 kB] Get:61 http://localhost:3142/debian sid/main amd64 libfile-listing-perl all 6.16-1 [12.4 kB] Get:62 http://localhost:3142/debian sid/main amd64 libfont-ttf-perl all 1.06-2 [318 kB] Get:63 http://localhost:3142/debian sid/main amd64 libio-html-perl all 1.004-3 [16.2 kB] Get:64 http://localhost:3142/debian sid/main amd64 liblwp-mediatypes-perl all 6.04-2 [20.2 kB] Get:65 http://localhost:3142/debian sid/main amd64 libhttp-message-perl all 6.46-1 [79.7 kB] Get:66 http://localhost:3142/debian sid/main amd64 libhtml-form-perl all 6.11-1 [33.1 kB] Get:67 http://localhost:3142/debian sid/main amd64 libhtml-html5-entities-perl all 0.004-3 [21.0 kB] Get:68 http://localhost:3142/debian sid/main amd64 libhtml-tree-perl all 5.07-3 [211 kB] Get:69 http://localhost:3142/debian sid/main amd64 libhttp-cookies-perl all 6.11-1 [19.1 kB] Get:70 http://localhost:3142/debian sid/main amd64 libhttp-negotiate-perl all 6.01-2 [13.1 kB] Get:71 http://localhost:3142/debian sid/main amd64 perl-openssl-defaults amd64 7+b2 [6724 B] Get:72 http://localhost:3142/debian sid/main amd64 libnet-ssleay-perl amd64 1.94-1+b1 [339 kB] Get:73 http://localhost:3142/debian sid/main amd64 libio-socket-ssl-perl all 2.085-1 [218 kB] Get:74 http://localhost:3142/debian sid/main amd64 libnet-http-perl all 6.23-1 [23.9 kB] Get:75 http://localhost:3142/debian sid/main amd64 liblwp-protocol-https-perl all 6.14-1 [10.8 kB] Get:76 http://localhost:3142/debian sid/main amd64 libwww-robotrules-perl all 6.02-1 [12.9 kB] Get:77 http://localhost:3142/debian sid/main amd64 libwww-perl all 6.77-1 [183 kB] Get:78 http://localhost:3142/debian sid/main amd64 libhtml-tokeparser-simple-perl all 3.16-4 [39.1 kB] Get:79 http://localhost:3142/debian sid/main amd64 libimport-into-perl all 1.002005-2 [11.3 kB] Get:80 http://localhost:3142/debian sid/main amd64 libio-interactive-perl all 1.025-1 [11.4 kB] Get:81 http://localhost:3142/debian sid/main amd64 libipc-run3-perl all 0.049-1 [31.5 kB] Get:82 http://localhost:3142/debian sid/main amd64 libjson-maybexs-perl all 1.004005-1 [12.9 kB] Get:83 http://localhost:3142/debian sid/main amd64 liblist-compare-perl all 0.55-2 [65.7 kB] Get:84 http://localhost:3142/debian sid/main amd64 liblist-someutils-perl all 0.59-1 [37.1 kB] Get:85 http://localhost:3142/debian sid/main amd64 liblist-utilsby-perl all 0.12-2 [15.5 kB] Get:86 http://localhost:3142/debian sid/main amd64 liblz1 amd64 1.15~pre1-1 [38.5 kB] Get:87 http://localhost:3142/debian sid/main amd64 liblzo2-2 amd64 2.10-3 [54.4 kB] Get:88 http://localhost:3142/debian sid/main amd64 libmarkdown2 amd64 2.2.7-2+b1 [35.6 kB] Get:89 http://localhost:3142/debian sid/main amd64 libmldbm-perl all 2.05-4 [16.8 kB] Get:90 http://localhost:3142/debian sid/main amd64 librole-tiny-perl all 2.002004-1 [21.4 kB] Get:91 http://localhost:3142/debian sid/main amd64 libsub-quote-perl all 2.006008-1 [21.8 kB] Get:92 http://localhost:3142/debian sid/main amd64 libmoo-perl all 2.005005-1 [58.0 kB] Get:93 http://localhost:3142/debian sid/main amd64 libstrictures-perl all 2.000006-1 [18.6 kB] Get:94 http://localhost:3142/debian sid/main amd64 libmoox-aliases-perl all 0.001006-2 [7156 B] Get:95 http://localhost:3142/debian sid/main amd64 libmouse-perl amd64 2.5.10-1+b5 [143 kB] Get:96 http://localhost:3142/debian sid/main amd64 libpackage-stash-perl all 0.40-1 [22.0 kB] Get:97 http://localhost:3142/debian sid/main amd64 libsub-identify-perl amd64 0.14-3+b2 [11.2 kB] Get:98 http://localhost:3142/debian sid/main amd64 libsub-name-perl amd64 0.27-1+b2 [12.5 kB] Get:99 http://localhost:3142/debian sid/main amd64 libnamespace-clean-perl all 0.27-2 [17.8 kB] Get:100 http://localhost:3142/debian sid/main amd64 libpath-tiny-perl all 0.144-1 [56.4 kB] Get:101 http://localhost:3142/debian sid/main amd64 libperlio-gzip-perl amd64 0.20-1+b3 [17.5 kB] Get:102 http://localhost:3142/debian sid/main amd64 libperlio-utf8-strict-perl amd64 0.010-1+b2 [11.4 kB] Get:103 http://localhost:3142/debian sid/main amd64 libproc-processtable-perl amd64 0.636-1+b2 [42.2 kB] Get:104 http://localhost:3142/debian sid/main amd64 libregexp-wildcards-perl all 1.05-3 [14.1 kB] Get:105 http://localhost:3142/debian sid/main amd64 libsereal-decoder-perl amd64 5.004+ds-1+b2 [99.3 kB] Get:106 http://localhost:3142/debian sid/main amd64 libsereal-encoder-perl amd64 5.004+ds-1+b2 [102 kB] Get:107 http://localhost:3142/debian sid/main amd64 libsort-versions-perl all 1.62-3 [8928 B] Get:108 http://localhost:3142/debian sid/main amd64 libxs-parse-keyword-perl amd64 0.42-1 [59.8 kB] Get:109 http://localhost:3142/debian sid/main amd64 libsyntax-keyword-try-perl amd64 0.29-2 [26.9 kB] Get:110 http://localhost:3142/debian sid/main amd64 libterm-readkey-perl amd64 2.38-2+b3 [24.7 kB] Get:111 http://localhost:3142/debian sid/main amd64 libtext-levenshteinxs-perl amd64 0.03-5+b3 [8700 B] Get:112 http://localhost:3142/debian sid/main amd64 libtext-markdown-discount-perl amd64 0.16-1+b2 [13.0 kB] Get:113 http://localhost:3142/debian sid/main amd64 libtext-xslate-perl amd64 3.5.9-2 [173 kB] Get:114 http://localhost:3142/debian sid/main amd64 libtime-duration-perl all 1.21-2 [13.1 kB] Get:115 http://localhost:3142/debian sid/main amd64 libtime-moment-perl amd64 0.44-2+b3 [72.8 kB] Get:116 http://localhost:3142/debian sid/main amd64 libunicode-utf8-perl amd64 0.62-2+b2 [20.2 kB] Get:117 http://localhost:3142/debian sid/main amd64 libwww-mechanize-perl all 2.18-1 [114 kB] Get:118 http://localhost:3142/debian sid/main amd64 libyaml-0-2 amd64 0.2.5-1+b1 [52.6 kB] Get:119 http://localhost:3142/debian sid/main amd64 libyaml-libyaml-perl amd64 0.89+ds-1+b1 [35.0 kB] Get:120 http://localhost:3142/debian sid/main amd64 plzip amd64 1.11-1 [63.9 kB] Get:121 http://localhost:3142/debian sid/main amd64 lzop amd64 1.04-2 [84.2 kB] Get:122 http://localhost:3142/debian sid/main amd64 patchutils amd64 0.4.2-1 [77.5 kB] Get:123 http://localhost:3142/debian sid/main amd64 t1utils amd64 1.41-4 [62.1 kB] Get:124 http://localhost:3142/debian sid/main amd64 unzip amd64 6.0-28 [166 kB] Get:125 http://localhost:3142/debian sid/main amd64 lintian all 2.117.0 [1052 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 11.7 MB in 0s (95.6 MB/s) Selecting previously unselected package openssl. (Reading database ... 40969 files and directories currently installed.) Preparing to unpack .../000-openssl_3.2.1-3_amd64.deb ... Unpacking openssl (3.2.1-3) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../001-ca-certificates_20240203_all.deb ... Unpacking ca-certificates (20240203) ... Selecting previously unselected package diffstat. Preparing to unpack .../002-diffstat_1.66-1_amd64.deb ... Unpacking diffstat (1.66-1) ... Selecting previously unselected package libassuan0:amd64. Preparing to unpack .../003-libassuan0_2.5.6-1+b1_amd64.deb ... Unpacking libassuan0:amd64 (2.5.6-1+b1) ... Selecting previously unselected package gpgconf. Preparing to unpack .../004-gpgconf_2.2.43-6_amd64.deb ... Unpacking gpgconf (2.2.43-6) ... Selecting previously unselected package gpg. Preparing to unpack .../005-gpg_2.2.43-6_amd64.deb ... Unpacking gpg (2.2.43-6) ... Selecting previously unselected package iso-codes. 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Setting up plzip (1.11-1) ... update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip (lzip) in auto mode update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip-compressor (lzip-compressor) in auto mode update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip-decompressor (lzip-decompressor) in auto mode Setting up libunicode-utf8-perl (0.62-2+b2) ... Setting up libmouse-perl (2.5.10-1+b5) ... Setting up libdata-messagepack-perl (1.02-1+b3) ... Setting up libdynaloader-functions-perl (0.003-3) ... Setting up libtext-glob-perl (0.11-3) ... Setting up libclass-method-modifiers-perl (2.15-1) ... Setting up liblist-compare-perl (0.55-2) ... Setting up libclone-perl:amd64 (0.46-1+b2) ... Setting up libyaml-0-2:amd64 (0.2.5-1+b1) ... Setting up libsub-identify-perl (0.14-3+b2) ... Setting up libcpanel-json-xs-perl:amd64 (4.38-1) ... Setting up libhtml-tagset-perl (3.24-1) ... Setting up libdevel-size-perl (0.84-1) ... 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Setting up libnet-ipv6addr-perl (1.02-1) ... Setting up gpg (2.2.43-6) ... Setting up libdata-validate-ip-perl (0.31-1) ... Setting up libemail-address-xs-perl (1.05-1+b3) ... Setting up libnet-ssleay-perl:amd64 (1.94-1+b1) ... Setting up libhttp-date-perl (6.06-1) ... Setting up libfile-basedir-perl (0.09-2) ... Setting up libfile-listing-perl (6.16-1) ... Setting up libnet-http-perl (6.23-1) ... Setting up libtext-markdown-discount-perl (0.16-1+b2) ... Setting up libexception-class-perl (1.45-1) ... Setting up libdevel-callchecker-perl:amd64 (0.009-1) ... Setting up ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 146 added, 0 removed; done. Setting up libdata-validate-uri-perl (0.07-3) ... Setting up libdata-optlist-perl (0.114-1) ... Setting up libwww-robotrules-perl (6.02-1) ... Setting up libhtml-parser-perl:amd64 (3.82-1) ... Setting up libio-socket-ssl-perl (2.085-1) ... Setting up libsub-exporter-perl (0.990-1) ... Setting up libhttp-message-perl (6.46-1) ... Setting up libhtml-form-perl (6.11-1) ... Setting up libiterator-perl (0.03+ds1-2) ... Setting up libhttp-negotiate-perl (6.01-2) ... Setting up libiterator-util-perl (0.02+ds1-2) ... Setting up libhttp-cookies-perl (6.11-1) ... Setting up libhtml-tree-perl (5.07-3) ... Setting up libparams-classify-perl:amd64 (0.015-2+b3) ... Setting up libcgi-pm-perl (4.64-1) ... Setting up libmodule-runtime-perl (0.016-2) ... Setting up libconst-fast-perl (0.014-2) ... Setting up libdata-dpath-perl (0.59-1) ... Setting up libmodule-implementation-perl (0.09-2) ... Setting up libpackage-stash-perl (0.40-1) ... Setting up libimport-into-perl (1.002005-2) ... Setting up libmoo-perl (2.005005-1) ... Setting up liblist-someutils-perl (0.59-1) ... Setting up libmoox-aliases-perl (0.001006-2) ... Setting up libb-hooks-endofscope-perl (0.28-1) ... Setting up libnamespace-clean-perl (0.27-2) ... Setting up libwww-perl (6.77-1) ... Setting up libhtml-tokeparser-simple-perl (3.16-4) ... Setting up libwww-mechanize-perl (2.18-1) ... Setting up liblwp-protocol-https-perl (6.14-1) ... Processing triggers for libc-bin (2.38-11) ... Processing triggers for man-db (2.12.1-1) ... Not building database; man-db/auto-update is not 'true'. Processing triggers for sgml-base (1.31) ... Setting up lintian (2.117.0) ... Setting up sbuild-build-depends-lintian-dummy:arm64 (0.invalid.0) ... Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Running lintian... I: Lintian run was successful. +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 600788 Build-Time: 436 Distribution: unstable Foreign Architectures: arm64 Host Architecture: arm64 Install-Time: 22 Job: libpwizlite_3.0.8-1 Lintian: pass Machine Architecture: amd64 Package: libpwizlite Package-Time: 469 Source-Version: 3.0.8-1 Space: 600788 Status: successful Version: 3.0.8-1 -------------------------------------------------------------------------------- Finished at 2024-05-31T10:36:00Z Build needed 00:07:49, 600788k disk space